jang1563 commited on
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5e1bf74
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1 Parent(s): a5041f2

Remove internal script: slurm/submit_eval_checkpoints.sh

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  1. slurm/submit_eval_checkpoints.sh +0 -50
slurm/submit_eval_checkpoints.sh DELETED
@@ -1,50 +0,0 @@
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- #!/bin/bash
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- # Evaluate timed-out checkpoints:
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- # drugban_balanced_random_uniform_random_seed{seed}
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- # drugban_balanced_random_degree_matched_seed{seed}
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- # Optional:
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- # SEEDS="42 43" bash slurm/submit_eval_checkpoints.sh
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-
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- set -euo pipefail
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-
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- SBATCH=/opt/ohpc/pub/software/slurm/24.05.2/bin/sbatch
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- NEGBIODB=${SCRATCH_DIR:-/path/to/scratch}/negbiodb
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- LOGDIR=$NEGBIODB/logs
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- SCRIPT=$NEGBIODB/slurm/eval_checkpoint.slurm
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- DATASET=${DATASET:-balanced}
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- SEEDS_STR=${SEEDS:-42}
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-
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- submit() {
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- local model=$1 split=$2 neg=$3 dataset=${4:-balanced} seed=${5:-42}
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- local name="negbio_eval_${model}_${dataset}_${split}_${neg}_seed${seed}"
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- local sbatch_out job_id
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- sbatch_out=$(
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- "$SBATCH" \
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- --job-name="$name" \
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- --output="$LOGDIR/${name}_%j.out" \
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- --error="$LOGDIR/${name}_%j.err" \
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- --export=MODEL="$model",SPLIT="$split",NEG="$neg",DATASET="$dataset",SEED="$seed" \
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- "$SCRIPT" 2>&1
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- )
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- job_id=$(echo "$sbatch_out" | grep -oP 'batch job \K\d+')
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- if [[ -z "$job_id" ]]; then
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- echo "ERROR: Failed to submit $name"
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- echo "$sbatch_out"
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- exit 1
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- fi
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- echo "Submitted $name → job $job_id"
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- }
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-
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- echo "=== Submitting eval-only jobs for timed-out checkpoints ==="
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- echo "Timestamp: $(date)"
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- echo "Dataset: $DATASET"
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- echo "Seeds: $SEEDS_STR"
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- echo ""
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-
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- for seed in $SEEDS_STR; do
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- submit "drugban" "random" "uniform_random" "$DATASET" "$seed"
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- submit "drugban" "random" "degree_matched" "$DATASET" "$seed"
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- done
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-
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- echo ""
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- echo "=== Done ==="