"""Load BindingDB inactive DTI data into NegBioDB. Usage: uv run python scripts/load_bindingdb.py """ import argparse import logging from pathlib import Path from negbiodb.db import DEFAULT_DB_PATH from negbiodb.etl_bindingdb import run_bindingdb_etl def main(): parser = argparse.ArgumentParser(description="Load BindingDB inactives into NegBioDB") parser.add_argument( "--db-path", type=Path, default=DEFAULT_DB_PATH, help="Path to NegBioDB SQLite database", ) parser.add_argument( "--chunksize", type=int, default=None, help="Chunk size for BindingDB TSV", ) args = parser.parse_args() logging.basicConfig(level=logging.INFO, format="%(asctime)s %(levelname)s %(message)s") print("=== BindingDB ETL ===") stats = run_bindingdb_etl(args.db_path, chunksize=args.chunksize) print("\n=== BindingDB ETL Summary ===") print(f"Rows read: {stats['rows_read']}") print(f"Filtered: {stats['rows_filtered_inactive']}") print(f"Skipped: {stats['rows_skipped']}") print(f"Attempted ins: {stats['rows_attempted_insert']}") print(f"Inserted: {stats['results_inserted']}") print(f"Pairs total: {stats['pairs_total']}") print("\nBindingDB ETL complete.") if __name__ == "__main__": main()