"""Load AACT data into NegBioDB-CT. Usage: python scripts_ct/load_aact.py [--db-path PATH] [--data-dir PATH] Prerequisites: - Database created: migrations applied automatically - AACT data downloaded: python scripts_ct/download_aact.py """ import argparse import logging from pathlib import Path from negbiodb_ct.ct_db import DEFAULT_CT_DB_PATH from negbiodb_ct.etl_aact import run_aact_etl def main(): parser = argparse.ArgumentParser(description="Load AACT into NegBioDB-CT") parser.add_argument("--db-path", type=Path, default=DEFAULT_CT_DB_PATH, help="Path to CT SQLite database") parser.add_argument("--data-dir", type=Path, default=None, help="Directory containing AACT .txt files") args = parser.parse_args() logging.basicConfig( level=logging.INFO, format="%(asctime)s %(levelname)s %(message)s", ) print("=== AACT ETL ===") stats = run_aact_etl(args.db_path, data_dir=args.data_dir) print(f"\n=== AACT ETL Summary ===") print(f"Studies read: {stats['studies_read']}") print(f"Interventions: {stats['interventions_inserted']}") print(f"Conditions: {stats['conditions_inserted']}") print(f"Trials: {stats['trials_inserted']}") print(f"Trial-Intervention links: {stats['trial_interventions_linked']}") print(f"Trial-Condition links: {stats['trial_conditions_linked']}") print(f"Publications linked: {stats['publications_linked']}") print("\nAACT ETL complete.") if __name__ == "__main__": main()