#!/usr/bin/env python """Load hu.MAP 3.0 negative pairs into PPI database (Silver tier).""" import argparse from pathlib import Path _PROJECT_ROOT = Path(__file__).resolve().parent.parent def main(): parser = argparse.ArgumentParser( description="Load hu.MAP 3.0 negatives into PPI DB" ) parser.add_argument( "--db-path", type=str, default=None, help="PPI database path" ) parser.add_argument( "--data-dir", type=str, default=None, help="hu.MAP data directory" ) parser.add_argument( "--neg-files", type=str, nargs="+", default=None, help="Negative pair filenames (default: from config)", ) args = parser.parse_args() from negbiodb.download import load_config from negbiodb_ppi.etl_humap import run_humap_etl neg_files = args.neg_files if neg_files is None: cfg = load_config() humap_cfg = cfg["ppi_domain"]["downloads"]["humap"] neg_files = [humap_cfg["neg_train"], humap_cfg["neg_test"]] stats = run_humap_etl( db_path=args.db_path, data_dir=args.data_dir, neg_files=neg_files, ) print("\nhu.MAP ETL complete:") for k, v in stats.items(): print(f" {k}: {v:,}") if __name__ == "__main__": main()