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Datasets:
jang1563
/
genelab-benchmark

Tasks:
Tabular Classification
Languages:
English
Tags:
genomics
transcriptomics
spaceflight
benchmarking
nasa-osdr
bulk-rna-seq
License:
Dataset card Files
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jang1563 commited on
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1 Parent(s): 8b7be2c

Add v5/evaluation/immune_deconv_gastrocnemius.json

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  1. v5/evaluation/immune_deconv_gastrocnemius.json +120 -0
v5/evaluation/immune_deconv_gastrocnemius.json ADDED
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+ {
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+ "tissue": "gastrocnemius",
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+ "n_samples": 32,
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+ "n_flt": 16,
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+ "n_gc": 16,
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+ "n_cell_types": 11,
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+ "n_significant_fdr05": 0,
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+ "cell_types": {
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+ "NK cells": {
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+ "mean_flt": 0.6971,
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+ "mean_gc": 1.3407,
12
+ "std_flt": 1.0921,
13
+ "std_gc": 1.6056,
14
+ "wilcoxon_p": 0.243892,
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+ "cliffs_delta": -0.2188,
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+ "direction": "down_in_flight",
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+ "fdr_p": 0.43713
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+ },
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+ "B derived": {
20
+ "mean_flt": 1.8116,
21
+ "mean_gc": 1.3227,
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+ "std_flt": 1.315,
23
+ "std_gc": 1.086,
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+ "wilcoxon_p": 0.294623,
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+ "cliffs_delta": 0.2188,
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+ "direction": "up_in_flight",
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+ "fdr_p": 0.43713
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+ },
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+ "Monocytes / macrophages": {
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+ "mean_flt": 3.2088,
31
+ "mean_gc": 3.1486,
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+ "std_flt": 1.2664,
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+ "std_gc": 1.0962,
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+ "wilcoxon_p": 0.835784,
35
+ "cliffs_delta": 0.0469,
36
+ "direction": "up_in_flight",
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+ "fdr_p": 0.919362
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+ },
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+ "Monocytes": {
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+ "mean_flt": 7.5805,
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+ "mean_gc": 7.2491,
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+ "std_flt": 0.7021,
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+ "std_gc": 0.6581,
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+ "wilcoxon_p": 0.250345,
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+ "cliffs_delta": 0.2422,
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+ "direction": "up_in_flight",
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+ "fdr_p": 0.43713
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+ },
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+ "Mast cells": {
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+ "mean_flt": 2.1538,
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+ "mean_gc": 2.8806,
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+ "std_flt": 1.3888,
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+ "std_gc": 1.4322,
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+ "wilcoxon_p": 0.192692,
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+ "cliffs_delta": -0.2734,
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+ "direction": "down_in_flight",
57
+ "fdr_p": 0.43713
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+ },
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+ "Eosinophils": {
60
+ "mean_flt": 5.7013,
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+ "mean_gc": 6.184,
62
+ "std_flt": 0.8478,
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+ "std_gc": 0.8167,
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+ "wilcoxon_p": 0.109204,
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+ "cliffs_delta": -0.3359,
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+ "direction": "down_in_flight",
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+ "fdr_p": 0.43713
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+ },
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+ "Basophils": {
70
+ "mean_flt": 3.581,
71
+ "mean_gc": 3.7807,
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+ "std_flt": 1.9123,
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+ "std_gc": 1.4363,
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+ "wilcoxon_p": 0.98496,
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+ "cliffs_delta": 0.0078,
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+ "direction": "up_in_flight",
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+ "fdr_p": 0.98496
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+ },
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+ "Vessels": {
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+ "mean_flt": 9.1511,
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+ "mean_gc": 8.9931,
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+ "std_flt": 0.3612,
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+ "std_gc": 0.2545,
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+ "wilcoxon_p": 0.12691,
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+ "cliffs_delta": 0.3203,
86
+ "direction": "up_in_flight",
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+ "fdr_p": 0.43713
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+ },
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+ "Lymphatics": {
90
+ "mean_flt": 4.727,
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+ "mean_gc": 4.8242,
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+ "std_flt": 2.3552,
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+ "std_gc": 1.7518,
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+ "wilcoxon_p": 0.546126,
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+ "cliffs_delta": 0.1289,
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+ "direction": "up_in_flight",
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+ "fdr_p": 0.667487
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+ },
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+ "Endothelial cells": {
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+ "mean_flt": 6.6589,
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+ "mean_gc": 6.8078,
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+ "std_flt": 0.4674,
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+ "std_gc": 0.3881,
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+ "wilcoxon_p": 0.266214,
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+ "cliffs_delta": -0.2344,
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+ "direction": "down_in_flight",
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+ "fdr_p": 0.43713
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+ },
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+ "Fibroblasts": {
110
+ "mean_flt": 5.7733,
111
+ "mean_gc": 5.9052,
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+ "std_flt": 0.5214,
113
+ "std_gc": 0.4238,
114
+ "wilcoxon_p": 0.317913,
115
+ "cliffs_delta": -0.2109,
116
+ "direction": "down_in_flight",
117
+ "fdr_p": 0.43713
118
+ }
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+ }
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+ }