compass-clinical-scribe-backup / data /primock57 /scripts /textgrid_to_transcript.py
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import os
from glob import glob
from utils import get_utterances_textgrid, strip_transcript_tags
def get_combined_transcript(transcript_path_doctor, transcript_path_patient):
utterances_doctor = get_utterances_textgrid(transcript_path_doctor)
utterances_patient = get_utterances_textgrid(transcript_path_patient)
for u in utterances_doctor:
u['speaker'] = 'Doctor'
for u in utterances_patient:
u['speaker'] = 'Patient'
combined_utterances = utterances_doctor + utterances_patient
combined_utterances.sort(key=lambda x: x['from'])
return [f"{u['speaker']}: {strip_transcript_tags(u['text'])}"
for u in combined_utterances]
def __parse_args():
import argparse
parser = argparse.ArgumentParser(
description='Compile joined transcripts from TextGrid files')
parser.add_argument('--transcript_path',
help='Folder containing TextGrid transcripts')
parser.add_argument('--output_path', help='Output folder')
return parser.parse_args()
def main():
args = __parse_args()
os.makedirs(args.output_path, exist_ok=True)
transcript_paths_doctor = glob(f'{args.transcript_path}/*doctor.TextGrid')
for path_doctor in transcript_paths_doctor:
print(path_doctor)
path_patient = path_doctor.replace('doctor', 'patient')
output_path_transcript = os.path.join(args.output_path,
os.path.basename(path_doctor)
.replace('_doctor.TextGrid',
'.txt'))
transcript_sentences = get_combined_transcript(path_doctor,
path_patient)
with open(output_path_transcript, 'w') as f:
f.write('\n'.join(transcript_sentences))
if __name__ == '__main__':
main()