#!/bin/bash #SBATCH --partition=scavenger-gpu #SBATCH --exclude=dcc-youlab-gpu-28,dcc-gehmlab-gpu-56 #SBATCH --array=2-3 #SBATCH --ntasks=1 #SBATCH --nodes=1 #SBATCH --cpus-per-task=16 #SBATCH --mem-per-cpu=64G #SBATCH --gres=gpu:1 #SBATCH --time=72:00:00 #SBATCH --output=/work/jf381/code/code/ICL_LOG/dataset_generation/%A_%a_%j.out #SBATCH --error=/work/jf381/code/code/ICL_LOG/dataset_generation/%A_%a_%j.err #SBATCH --requeue SLURM_ARRAY_TASK_ID=3 # Enhanced Dataset Generation Script for SLURM Array Jobs # This script uses SLURM_ARRAY_TASK_ID to control which dataset to generate set -e # Exit on any error # Configuration BASE_OUTPUT_DIR="/work/jf381/data/icl_jay" RAW_DATA_DIR="/work/jf381/data/raw_datasets" NUM_PROMPTS=1000 SAMPLES_PER_CLASS=50 IMAGE_SIZE="256 256" NUM_WORKERS=8 # Use all available CPUs # Create necessary directories mkdir -p "$BASE_OUTPUT_DIR" mkdir -p "$RAW_DATA_DIR" mkdir -p "/work/jf381/code/code/ICL_LOG/dataset_generation" # Function to log with timestamp log_message() { echo "[$(date '+%Y-%m-%d %H:%M:%S')] $1" } # Function to prepare a specific dataset prepare_dataset() { local dataset_type=$1 local output_dir="$BASE_OUTPUT_DIR/$dataset_type" log_message "Starting preparation of $dataset_type dataset..." log_message "SLURM Job ID: $SLURM_JOB_ID" log_message "Array Task ID: $SLURM_ARRAY_TASK_ID" log_message "Output directory: $output_dir" log_message "Using $NUM_WORKERS worker threads" # Record start time start_time=$(date +%s) # Run dataset preparation python /work/jf381/code/code/ICL_Jay/data/prepare_datasets.py \ --dataset "$dataset_type" \ --data_dir "$RAW_DATA_DIR" \ --output_dir "$output_dir" \ --num_prompts $NUM_PROMPTS \ --samples_per_class $SAMPLES_PER_CLASS \ --image_size $IMAGE_SIZE \ --num_workers $NUM_WORKERS \ --force # Check if preparation was successful if [ $? -eq 0 ]; then # Record end time and calculate duration end_time=$(date +%s) duration=$((end_time - start_time)) log_message "✅ $dataset_type preparation completed successfully!" log_message "⏱️ Processing time: ${duration} seconds ($(($duration / 60)) minutes)" # Run verification log_message "🔍 Running verification for $dataset_type..." python /work/jf381/code/code/ICL_Jay/data/prepare_datasets.py \ --dataset "$dataset_type" \ --output_dir "$output_dir" \ --verify if [ $? -eq 0 ]; then log_message "✅ $dataset_type verification passed!" else log_message "❌ $dataset_type verification failed!" return 1 fi # Show dataset statistics log_message "📊 Dataset statistics for $dataset_type:" if [ -f "$output_dir/dataset_metadata.json" ]; then python3 -c " import json import os try: with open('$output_dir/dataset_metadata.json', 'r') as f: meta = json.load(f) print(f' Total prompts: {meta.get(\"num_prompts\", \"N/A\")}') print(f' Training prompts: {len(meta.get(\"train_prompts\", []))}') print(f' Test prompts: {len(meta.get(\"test_prompts\", []))}') print(f' Classes used: {len(meta.get(\"train_classes_used\", []))}') if 'data_split_info' in meta: split_info = meta['data_split_info'] print(f' Train split: {split_info.get(\"train_split_used\", \"N/A\")}') print(f' Test split: {split_info.get(\"test_split_used\", \"N/A\")}') print(f' No data leakage: {split_info.get(\"no_data_leakage\", False)}') if 'processing_stats' in meta: stats = meta['processing_stats'] print(f' Completed tasks: {stats.get(\"completed_tasks\", \"N/A\")}') print(f' Failed tasks: {stats.get(\"failed_tasks\", \"N/A\")}') except Exception as e: print(f' Error reading metadata: {e}') " fi # Calculate dataset size dataset_size=$(du -sh "$output_dir" 2>/dev/null | cut -f1 || echo 'N/A') log_message " Dataset size: $dataset_size" return 0 else log_message "❌ $dataset_type preparation failed!" return 1 fi } # Main execution based on SLURM_ARRAY_TASK_ID log_message "===================================================" log_message "SLURM Array Dataset Generation Job" log_message "===================================================" log_message "SLURM_JOB_ID: $SLURM_JOB_ID" log_message "SLURM_ARRAY_JOB_ID: $SLURM_ARRAY_JOB_ID" log_message "SLURM_ARRAY_TASK_ID: $SLURM_ARRAY_TASK_ID" log_message "HOSTNAME: $(hostname)" log_message "GPU INFO: $(nvidia-smi --query-gpu=name --format=csv,noheader | head -1)" log_message "===================================================" # Check for required Python packages log_message "Checking Python dependencies..." python3 -c " import sys required_packages = ['datasets', 'torch', 'torchvision', 'PIL', 'numpy', 'tqdm'] missing_packages = [] for package in required_packages: try: if package == 'PIL': import PIL else: __import__(package) print(f'✅ {package}') except ImportError: missing_packages.append(package) print(f'❌ {package}') if missing_packages: print(f'Missing packages: {missing_packages}') sys.exit(1) else: print('All dependencies satisfied!') " if [ $? -ne 0 ]; then log_message "❌ Dependency check failed!" exit 1 fi # Map SLURM_ARRAY_TASK_ID to dataset type case $SLURM_ARRAY_TASK_ID in 0) DATASET_TYPE="cifar10" log_message "📋 Task 0: Preparing CIFAR-10 dataset" log_message " - 10 classes with automatic train/test split" log_message " - Fast processing, good for initial testing" ;; 1) DATASET_TYPE="cifar100" log_message "📋 Task 1: Preparing CIFAR-100 dataset" log_message " - 100 classes with automatic train/test split" log_message " - Moderate complexity, comprehensive testing" ;; 2) DATASET_TYPE="imagenet10" log_message "📋 Task 2: Preparing ImageNet10 dataset" log_message " - 10 carefully selected classes from ImageNet100" log_message " - Optimized for in-context learning performance" log_message " - Uses HuggingFace ilee0022/ImageNet100 dataset" ;; 3) DATASET_TYPE="imagenet100" log_message "📋 Task 3: Preparing ImageNet100 dataset" log_message " - 100 classes from HuggingFace dataset" log_message " - Comprehensive evaluation dataset" log_message " - Proper train/validation split from HuggingFace" ;; *) log_message "❌ Invalid SLURM_ARRAY_TASK_ID: $SLURM_ARRAY_TASK_ID" log_message "Valid IDs are 0-3 (cifar10, cifar100, imagenet10, imagenet100)" exit 1 ;; esac # Execute dataset preparation log_message "Starting dataset preparation for $DATASET_TYPE..." prepare_dataset "$DATASET_TYPE" if [ $? -eq 0 ]; then log_message "===================================================" log_message "✅ SUCCESS: $DATASET_TYPE dataset preparation completed!" log_message "===================================================" log_message "Dataset location: $BASE_OUTPUT_DIR/$DATASET_TYPE" log_message "" log_message "To use this dataset in your training script:" log_message "python your_training_script.py \\" log_message " --data_type image_data \\" log_message " --dataset_type $DATASET_TYPE \\" log_message " --image_dir $BASE_OUTPUT_DIR/$DATASET_TYPE \\" log_message " --use_vgg_features \\" log_message " --image_noise_level 0.1" log_message "" log_message "For combined manifolds:" log_message "python your_training_script.py \\" log_message " --data_type combine_manifold \\" log_message " --manifold_list swiss_roll,sphere,image_data \\" log_message " --dataset_type $DATASET_TYPE \\" log_message " --image_dir $BASE_OUTPUT_DIR/$DATASET_TYPE \\" log_message " --use_vgg_features" log_message "===================================================" else log_message "===================================================" log_message "❌ FAILURE: $DATASET_TYPE dataset preparation failed!" log_message "===================================================" log_message "Check the error logs above for details." log_message "Common issues:" log_message " - Network connectivity for HuggingFace datasets" log_message " - Insufficient disk space" log_message " - Missing Python dependencies" log_message " - GPU memory issues" log_message "===================================================" exit 1 fi log_message "Job completed at $(date)" log_message "SLURM_ARRAY_TASK_ID $SLURM_ARRAY_TASK_ID finished successfully"