#!/bin/bash #SBATCH --partition=scavenger-gpu #SBATCH --exclude=dcc-youlab-gpu-28,dcc-gehmlab-gpu-56 #SBATCH --array=0-35 # 6 configurations to test #SBATCH --ntasks=1 #SBATCH --nodes=1 #SBATCH --cpus-per-task=1 #SBATCH --mem-per-cpu=32G #SBATCH --gres=gpu:1 #SBATCH --time=72:00:00 #SBATCH --output=/work/jf381/code/code/ICL_LOG/ICL_MODEL_TEST_TYPE2_Finetune_Pretrain_swiss_roll_045/%A_%a_%j.out #SBATCH --error=/work/jf381/code/code/ICL_LOG/ICL_MODEL_TEST_TYPE2_Finetune_Pretrain_swiss_roll_045/%A_%a_%j.err #SBATCH --nodelist=dcc-allenlab-gpu-[01-04],dcc-allenlab-gpu-[05-12],dcc-majoroslab-gpu-[01-08],dcc-yaolab-gpu-[01-08],dcc-wengerlab-gpu-01,dcc-engelhardlab-gpu-[01-04],dcc-motesa-gpu-[01-04],dcc-pbenfeylab-gpu-[01-04],dcc-vossenlab-gpu-[01-04],dcc-youlab-gpu-[01-56],dcc-mastatlab-gpu-01,dcc-viplab-gpu-01,dcc-youlab-gpu-57 #SBATCH --requeue set -e # 30,31,32 softmax use_cf # 18,19,20 softmax use_ff # exp 9 10 11 # 678 softmax # nvidia-smi | grep 'python' | awk '{ print $5 }' | xargs -n1 kill -9 # SLURM_ARRAY_TASK_ID=3 # conda activate /work/jf381/cache/conda_envs/paul31 # source activate /work/jf381/cache/conda_envs/paul31 # use SLURM_ARRAY_TASK_ID to control # cd /work/jf381/code/code/ICL_Jay ## pretrain useful for pe+lap ## add noise add performance ## test context size ## test model # distribute 1000 tasks on # python /work/jf381/code/code/ICL_Jay/train_end2end_new.py --test_mode $SLURM_ARRAY_TASK_ID --n_epochs 3001 --data_type sphere --data_generation --slurm_id --slurm_tasks # n_epochs_stride # SLURM_ARRAY_TASK_ID=0 #!/bin/bash # 定义噪声水平列表 #!/bin/bash # 获取SLURM任务ID # SLURM_ARRAY_TASK_ID=34 # SLURM_ARRAY_TASK_ID=0 SLURM_ID=${SLURM_ARRAY_TASK_ID:-0} # 设置数据类型 # 设置基础噪声水平(或从列表中选择) add_noises=0 # 也可以从一个列表中基于SLURM_ID选择 # 使用SLURM_ID来确定模型配置 # 假设我们有以下变量组合: # 1. n_layer_icl: 1, 2, 3, 4 # 2. kernel: 'linear', 'rbf', 'softmax', 'exp' # 3. 使用选项: 无特殊选项, use_ff, use_ct # /work/jf381/code/code/ICL_LOG/ICL_MODEL_TEST_TYPE2_Finetune_Pretrain_ENDEND # NOW data_type="swiss_roll" test_data_type="swiss_roll" # 计算层数 (1, 2, 4) layer_options=(1 2 4) layer_idx=$(( SLURM_ID % 3 )) n_layer_icl=${layer_options[$layer_idx]} # 计算kernel类型 (0-3) kernel_idx=$(( (SLURM_ID / 3) % 4 )) kernels=("linear" "rbf" "softmax" "exp") kernel=${kernels[$kernel_idx]} # 计算使用选项 (0-2) option_idx=$(( (SLURM_ID / 12) % 3 )) options=("" "--use_ff" "--use_cf") option=${options[$option_idx]} icl_type=2 echo "Running with configuration:" echo "SLURM_ID = $SLURM_ID" echo "n_layer_icl = $n_layer_icl" echo "kernel = $kernel" echo "option = $option" echo "icl_type = $icl_type" # 运行Python脚本 python /work/jf381/code/code/ICL_Jay/train_end2end_new.py \ --test_mode 3 \ --n_epochs 3001 \ --data_type $data_type \ --n_layer_icl $n_layer_icl \ --test_data_type $test_data_type \ --add_noises $add_noises \ --kernel $kernel \ --load_pretrain_model 5 \ --fine_tune_n_epochs 3001 \ --icl_type $icl_type \ --faster_test \ $option # python /work/jf381/code/code/ICL_Jay/train_end2end_new.py --test_mode $SLURM_ARRAY_TASK_ID --n_epochs 3001 --data_type $data_type --n_layer_icl 2 --test_data_type $test_data_type # python /work/jf381/code/code/ICL_Jay/train_end2end_new_test.py --test_mode 3 --n_epochs 31 --load_model # Test Mode 0: Full Training # This is the "full package" mode where everything is turned on. We're training all components simultaneously - Laplacian prediction (lap_weight=1), positional encoding (pe_weight=1), and in-context learning (icl_weight=1). We just give the model raw data and let it handle everything end-to-end. This tests how well all components work together. # Test Mode 1: Pretrain Laplacian Only # This focuses just on pretraining the Laplacian prediction component (lap_weight=1) while turning off the other parts (pe_weight=0, icl_weight=0). It's like teaching the model to understand the graph structure first before worrying about embeddings or classification. We're laying the foundation. # Test Mode 2: Pretrain Positional Encoding # Here, we're assuming we already have the correct Laplacian (we feed in real_lap), and we're training just the positional encoding component (pe_weight=1). We're skipping the Laplacian prediction (lap_weight=0) and not worrying about classification yet (icl_weight=0). This lets us focus on learning good embeddings from a known graph structure. # Test Mode 3: Pretrain In-Context Learning # In this mode, we're assuming we already have the perfect embeddings (we feed in real_ev), and we're only training the classification component (icl_weight=1). Both Laplacian and positional encoding parts are disabled (lap_weight=0, pe_weight=0). This tests how well the model can do classification when given ideal embeddings. # Test Mode 4: Pretrain Laplacian + Positional Encoding # This mode trains both the Laplacian prediction and positional encoding components together (lap_weight=1, pe_weight=1), but doesn't train the classification part (icl_weight=0). It's about getting the underlying representation right before trying to do any classification.