#!/bin/bash #SBATCH --partition=scavenger-gpu #SBATCH --exclude=dcc-youlab-gpu-28,dcc-gehmlab-gpu-56 #SBATCH --array=0,1,2,3,4,5 # 6 configurations to test #SBATCH --ntasks=1 #SBATCH --nodes=1 #SBATCH --cpus-per-task=4 #SBATCH --mem-per-cpu=64G #SBATCH --gres=gpu:1 #SBATCH --time=72:00:00 #SBATCH --output=/work/jf381/code/code/ICL_LOG/3_30_18/%A_%a_%j.out #SBATCH --error=/work/jf381/code/code/ICL_LOG/3_30_18/%A_%a_%j.err #SBATCH --nodelist=dcc-allenlab-gpu-[01-04],dcc-allenlab-gpu-[05-12],dcc-majoroslab-gpu-[01-08],dcc-yaolab-gpu-[01-08],dcc-wengerlab-gpu-01,dcc-engelhardlab-gpu-[01-04],dcc-motesa-gpu-[01-04],dcc-pbenfeylab-gpu-[01-04],dcc-vossenlab-gpu-[01-04],dcc-youlab-gpu-[01-56],dcc-mastatlab-gpu-01,dcc-viplab-gpu-01,dcc-youlab-gpu-57 #SBATCH --requeue set -e # nvidia-smi | grep 'python' | awk '{ print $5 }' | xargs -n1 kill -9 # SLURM_ARRAY_TASK_ID=3 # conda activate /work/jf381/cache/conda_envs/paul31 # source activate /work/jf381/cache/conda_envs/paul31 # use SLURM_ARRAY_TASK_ID to control # cd /work/jf381/code/code/ICL_Jay # distribute 1000 tasks on # python /work/jf381/code/code/ICL_Jay/train_end2end_new.py --test_mode $SLURM_ARRAY_TASK_ID --n_epochs 3001 --data_type sphere --data_generation --slurm_id --slurm_tasks # n_epochs_stride # SLURM_ARRAY_TASK_ID=0 python /work/jf381/code/code/ICL_Jay/train_end2end_new.py --test_mode $SLURM_ARRAY_TASK_ID --n_epochs 30001 --data_type swiss_roll # python /work/jf381/code/code/ICL_Jay/train_end2end_new_test.py --test_mode 3 --n_epochs 31 --load_model # Test Mode 0: Full Training # This is the "full package" mode where everything is turned on. We're training all components simultaneously - Laplacian prediction (lap_weight=1), positional encoding (pe_weight=1), and in-context learning (icl_weight=1). We just give the model raw data and let it handle everything end-to-end. This tests how well all components work together. # Test Mode 1: Pretrain Laplacian Only # This focuses just on pretraining the Laplacian prediction component (lap_weight=1) while turning off the other parts (pe_weight=0, icl_weight=0). It's like teaching the model to understand the graph structure first before worrying about embeddings or classification. We're laying the foundation. # Test Mode 2: Pretrain Positional Encoding # Here, we're assuming we already have the correct Laplacian (we feed in real_lap), and we're training just the positional encoding component (pe_weight=1). We're skipping the Laplacian prediction (lap_weight=0) and not worrying about classification yet (icl_weight=0). This lets us focus on learning good embeddings from a known graph structure. # Test Mode 3: Pretrain In-Context Learning # In this mode, we're assuming we already have the perfect embeddings (we feed in real_ev), and we're only training the classification component (icl_weight=1). Both Laplacian and positional encoding parts are disabled (lap_weight=0, pe_weight=0). This tests how well the model can do classification when given ideal embeddings. # Test Mode 4: Pretrain Laplacian + Positional Encoding # This mode trains both the Laplacian prediction and positional encoding components together (lap_weight=1, pe_weight=1), but doesn't train the classification part (icl_weight=0). It's about getting the underlying representation right before trying to do any classification.