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Add files using upload-large-folder tool
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# Copyright (C) 2012 Anaconda, Inc
# SPDX-License-Identifier: BSD-3-Clause
"""Miscellaneous utility functions."""
from __future__ import annotations
import os
import re
import shutil
from logging import getLogger
from os.path import abspath, dirname, exists, isdir, isfile, join, relpath
from typing import TYPE_CHECKING
from .base.constants import EXPLICIT_MARKER
from .base.context import context
from .common.compat import on_mac, on_win, open_utf8
from .common.io import dashlist
from .common.path import expand
from .common.url import is_url, join_url, path_to_url
from .core.index import Index
from .core.link import PrefixSetup, UnlinkLinkTransaction
from .core.package_cache_data import PackageCacheData, ProgressiveFetchExtract
from .core.prefix_data import PrefixData
from .deprecations import deprecated
from .exceptions import (
DisallowedPackageError,
DryRunExit,
PackagesNotFoundError,
ParseError,
SpecNotFoundInPackageCache,
)
from .gateways.disk.delete import rm_rf
from .gateways.disk.link import islink, readlink, symlink
from .models.match_spec import ChannelMatch, MatchSpec
from .models.prefix_graph import PrefixGraph
if TYPE_CHECKING:
from collections.abc import Iterable, Sequence
from typing import Any
from .models.records import PackageCacheRecord, PackageRecord
log = getLogger(__name__)
def conda_installed_files(prefix, exclude_self_build=False):
"""
Return the set of files which have been installed (using conda) into
a given prefix.
"""
res = set()
for meta in PrefixData(prefix).iter_records():
if exclude_self_build and "file_hash" in meta:
continue
res.update(set(meta.get("files", ())))
return res
deprecated.constant(
"26.9",
"27.3",
"url_pat",
re.compile(
r"(?:(?P<url_p>.+)(?:[/\\]))?"
r"(?P<fn>[^/\\#]+(?:\.conda|\.tar\.bz2))"
r"(?:#("
r"(?P<md5>[0-9a-f]{32})"
r"|((sha256:)?(?P<sha256>[0-9a-f]{64}))"
r"))?$"
),
addendum="Use `conda.misc._get_url_pattern()` instead.",
)
def _get_url_pattern() -> re.Pattern:
"""Build URL pattern dynamically based on registered package extensions."""
extensions = context.plugin_manager.get_package_extractors().keys()
ext_pattern = "|".join(map(re.escape, extensions))
return re.compile(
r"(?:(?P<url_p>.+)(?:[/\\]))?"
rf"(?P<fn>[^/\\#]+(?:{ext_pattern}))"
r"(?:#("
r"(?P<md5>[0-9a-f]{32})"
r"|((sha256:)?(?P<sha256>[0-9a-f]{64}))"
r"))?$"
)
def _match_specs_from_explicit(specs: Iterable[str]) -> Iterable[MatchSpec]:
url_pat = _get_url_pattern()
for spec in specs:
if spec == EXPLICIT_MARKER:
continue
if not is_url(spec):
"""
# This does not work because url_to_path does not enforce Windows
# backslashes. Should it? Seems like a dangerous change to make but
# it would be cleaner.
expanded = expand(spec)
urled = path_to_url(expanded)
pathed = url_to_path(urled)
assert pathed == expanded
"""
spec = path_to_url(expand(spec))
# parse URL
m = url_pat.match(spec)
if m is None:
raise ParseError(f"Could not parse explicit URL: {spec}")
url_p, fn = m.group("url_p"), m.group("fn")
url = join_url(url_p, fn)
# url_p is everything but the tarball_basename and the checksum
checksums = {}
if md5 := m.group("md5"):
checksums["md5"] = md5
if sha256 := m.group("sha256"):
checksums["sha256"] = sha256
yield MatchSpec(url, **checksums)
def explicit(
specs: Iterable[str],
prefix: str,
verbose: bool = False,
force_extract: bool = True,
index: Any = None,
requested_specs: Sequence[str] | None = None,
) -> None:
package_cache_records = get_package_records_from_explicit(specs)
install_explicit_packages(
package_cache_records=package_cache_records,
prefix=prefix,
requested_specs=requested_specs,
)
def install_explicit_packages(
package_cache_records: list[PackageRecord],
prefix: str,
requested_specs: Sequence[str] | None = None,
):
"""Install a list of PackageRecords into a prefix"""
specs_pcrecs = tuple([rec.to_match_spec(), rec] for rec in package_cache_records)
precs_to_remove = []
prefix_data = PrefixData(prefix)
for q, (spec, pcrec) in enumerate(specs_pcrecs):
new_spec = MatchSpec(spec, name=pcrec.name)
specs_pcrecs[q][0] = new_spec
prec = prefix_data.get(pcrec.name, None)
if prec:
# If we've already got matching specifications, then don't bother re-linking it
if next(prefix_data.query(new_spec), None):
specs_pcrecs[q][0] = None
else:
precs_to_remove.append(prec)
# Record user-requested specs in history when provided, otherwise fall back to
# all processed specs for backwards compatibility
if requested_specs:
update_specs_for_history = tuple(MatchSpec(spec) for spec in requested_specs)
else:
update_specs_for_history = tuple(sp[0] for sp in specs_pcrecs if sp[0])
stp = PrefixSetup(
prefix,
precs_to_remove,
tuple(sp[1] for sp in specs_pcrecs if sp[0]),
(),
update_specs_for_history,
(),
)
txn = UnlinkLinkTransaction(stp)
if not context.json and not context.quiet:
txn.print_transaction_summary()
txn.execute()
def _get_package_record_from_specs(specs: list[str]) -> Iterable[PackageCacheRecord]:
"""Given a list of specs, find the corresponding PackageCacheRecord. If
some PackageCacheRecords are missing, raise an error.
"""
specs_pcrecs = tuple(
[spec, next(PackageCacheData.query_all(spec), None)] for spec in specs
)
# Assert that every spec has a PackageCacheRecord
specs_with_missing_pcrecs = [
str(spec) for spec, pcrec in specs_pcrecs if pcrec is None
]
if specs_with_missing_pcrecs:
if len(specs_with_missing_pcrecs) == len(specs_pcrecs):
raise SpecNotFoundInPackageCache("No package cache records found")
else:
missing_precs_list = ", ".join(specs_with_missing_pcrecs)
raise SpecNotFoundInPackageCache(
f"Missing package cache records for: {missing_precs_list}"
)
return [rec[1] for rec in specs_pcrecs]
def get_package_records_from_explicit(lines: list[str]) -> Iterable[PackageCacheRecord]:
"""Given the lines from an explicit.txt, create the PackageRecords for each of the
specified packages. This may require downloading the package, if it does not already
exist in the package cache.
"""
# Extract the list of specs
fetch_specs = list(_match_specs_from_explicit(lines))
if context.dry_run:
raise DryRunExit()
# Fetch the packages - if they are already cached nothing new will be downloaded
pfe = ProgressiveFetchExtract(fetch_specs)
pfe.execute()
# Get the package records from the cache
return _get_package_record_from_specs(fetch_specs)
def walk_prefix(prefix, ignore_predefined_files=True, windows_forward_slashes=True):
"""Return the set of all files in a given prefix directory."""
res = set()
prefix = abspath(prefix)
ignore = {
"pkgs",
"envs",
"conda-bld",
"conda-meta",
".conda_lock",
"users",
"LICENSE.txt",
"info",
"conda-recipes",
".index",
".unionfs",
".nonadmin",
}
binignore = {"conda", "activate", "deactivate"}
if on_mac:
ignore.update({"python.app", "Launcher.app"})
for fn in (entry.name for entry in os.scandir(prefix)):
if ignore_predefined_files and fn in ignore:
continue
if isfile(join(prefix, fn)):
res.add(fn)
continue
for root, dirs, files in os.walk(join(prefix, fn)):
should_ignore = ignore_predefined_files and root == join(prefix, "bin")
for fn2 in files:
if should_ignore and fn2 in binignore:
continue
res.add(relpath(join(root, fn2), prefix))
for dn in dirs:
path = join(root, dn)
if islink(path):
res.add(relpath(path, prefix))
if on_win and windows_forward_slashes:
return {path.replace("\\", "/") for path in res}
else:
return res
def untracked(prefix, exclude_self_build=False):
"""Return (the set) of all untracked files for a given prefix."""
conda_files = conda_installed_files(prefix, exclude_self_build)
return {
path
for path in walk_prefix(prefix) - conda_files
if not (
path.endswith("~")
or on_mac
and path.endswith(".DS_Store")
or path.endswith(".pyc")
and path[:-1] in conda_files
)
}
@deprecated("25.9", "26.3", addendum="Use PrefixData.set_nonadmin()")
def touch_nonadmin(prefix):
"""Creates $PREFIX/.nonadmin if sys.prefix/.nonadmin exists (on Windows)."""
if on_win and exists(join(context.root_prefix, ".nonadmin")):
if not isdir(prefix):
os.makedirs(prefix)
with open_utf8(join(prefix, ".nonadmin"), "w") as fo:
fo.write("")
def clone_env(prefix1, prefix2, verbose=True, quiet=False, index_args=None):
"""Clone existing prefix1 into new prefix2."""
untracked_files = untracked(prefix1)
drecs = {prec for prec in PrefixData(prefix1).iter_records()}
# Resolve URLs for packages that do not have URLs
index = {}
unknowns = [prec for prec in drecs if not prec.get("url")]
notfound = []
if unknowns:
index_args = index_args or {}
index_args["channels"] = index_args.pop("channel_urls")
index = Index(**index_args)
for prec in unknowns:
spec = MatchSpec(name=prec.name, version=prec.version, build=prec.build)
precs = tuple(prec for prec in index.values() if spec.match(prec))
if not precs:
notfound.append(spec)
elif len(precs) > 1:
drecs.remove(prec)
drecs.add(_get_best_prec_match(precs))
else:
drecs.remove(prec)
drecs.add(precs[0])
if notfound:
raise PackagesNotFoundError(notfound)
# Assemble the URL and channel list
urls = {}
for prec in drecs:
urls[prec] = prec["url"]
precs = tuple(PrefixGraph(urls).graph)
urls = [urls[prec] for prec in precs]
disallowed = tuple(MatchSpec(s) for s in context.disallowed_packages)
for prec in precs:
if any(d.match(prec) for d in disallowed):
raise DisallowedPackageError(prec)
if verbose:
print("Packages: %d" % len(precs))
print("Files: %d" % len(untracked_files))
if context.dry_run:
raise DryRunExit()
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
rm_rf(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
symlink(readlink(src), dst)
continue
try:
with open_utf8(src, "rb") as fi:
data = fi.read()
except OSError:
continue
try:
s = data.decode("utf-8")
s = s.replace(prefix1, prefix2)
data = s.encode("utf-8")
except UnicodeDecodeError: # data is binary
pass
with open_utf8(dst, "wb") as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = explicit(
urls,
prefix2,
verbose=not quiet,
index=index,
force_extract=False,
)
return actions, untracked_files
def _get_best_prec_match(precs):
if not precs:
raise ValueError("'precs' cannot be empty.")
for channel in context.channels:
channel_matcher = ChannelMatch(channel)
prec_matches = tuple(
prec for prec in precs if channel_matcher.match(prec.channel.name)
)
if prec_matches:
break
else:
prec_matches = precs
log.warning("Multiple packages found: %s", dashlist(prec_matches))
return prec_matches[0]