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miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/csgraph/tests/test_spanning_tree.py

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+"""Test the minimum spanning tree function"""
+import numpy as np
+from numpy.testing import assert_
+import numpy.testing as npt
+from scipy.sparse import csr_array
+from scipy.sparse.csgraph import minimum_spanning_tree
+
+
+def test_minimum_spanning_tree():
+
+    # Create a graph with two connected components.
+    graph = [[0,1,0,0,0],
+             [1,0,0,0,0],
+             [0,0,0,8,5],
+             [0,0,8,0,1],
+             [0,0,5,1,0]]
+    graph = np.asarray(graph)
+
+    # Create the expected spanning tree.
+    expected = [[0,1,0,0,0],
+                [0,0,0,0,0],
+                [0,0,0,0,5],
+                [0,0,0,0,1],
+                [0,0,0,0,0]]
+    expected = np.asarray(expected)
+
+    # Ensure minimum spanning tree code gives this expected output.
+    csgraph = csr_array(graph)
+    mintree = minimum_spanning_tree(csgraph)
+    mintree_array = mintree.toarray()
+    npt.assert_array_equal(mintree_array, expected,
+                           'Incorrect spanning tree found.')
+
+    # Ensure that the original graph was not modified.
+    npt.assert_array_equal(csgraph.toarray(), graph,
+        'Original graph was modified.')
+
+    # Now let the algorithm modify the csgraph in place.
+    mintree = minimum_spanning_tree(csgraph, overwrite=True)
+    npt.assert_array_equal(mintree.toarray(), expected,
+        'Graph was not properly modified to contain MST.')
+
+    np.random.seed(1234)
+    for N in (5, 10, 15, 20):
+
+        # Create a random graph.
+        graph = 3 + np.random.random((N, N))
+        csgraph = csr_array(graph)
+
+        # The spanning tree has at most N - 1 edges.
+        mintree = minimum_spanning_tree(csgraph)
+        assert_(mintree.nnz < N)
+
+        # Set the sub diagonal to 1 to create a known spanning tree.
+        idx = np.arange(N-1)
+        graph[idx,idx+1] = 1
+        csgraph = csr_array(graph)
+        mintree = minimum_spanning_tree(csgraph)
+
+        # We expect to see this pattern in the spanning tree and otherwise
+        # have this zero.
+        expected = np.zeros((N, N))
+        expected[idx, idx+1] = 1
+
+        npt.assert_array_equal(mintree.toarray(), expected,
+            'Incorrect spanning tree found.')

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/csgraph/tests/test_traversal.py

@@ -0,0 +1,148 @@
+import numpy as np
+import pytest
+from numpy.testing import assert_array_almost_equal
+from scipy.sparse import csr_array, csr_matrix, coo_array, coo_matrix
+from scipy.sparse.csgraph import (breadth_first_tree, depth_first_tree,
+    csgraph_to_dense, csgraph_from_dense, csgraph_masked_from_dense)
+
+
+def test_graph_breadth_first():
+    csgraph = np.array([[0, 1, 2, 0, 0],
+                        [1, 0, 0, 0, 3],
+                        [2, 0, 0, 7, 0],
+                        [0, 0, 7, 0, 1],
+                        [0, 3, 0, 1, 0]])
+    csgraph = csgraph_from_dense(csgraph, null_value=0)
+
+    bfirst = np.array([[0, 1, 2, 0, 0],
+                       [0, 0, 0, 0, 3],
+                       [0, 0, 0, 7, 0],
+                       [0, 0, 0, 0, 0],
+                       [0, 0, 0, 0, 0]])
+
+    for directed in [True, False]:
+        bfirst_test = breadth_first_tree(csgraph, 0, directed)
+        assert_array_almost_equal(csgraph_to_dense(bfirst_test),
+                                  bfirst)
+
+
+def test_graph_depth_first():
+    csgraph = np.array([[0, 1, 2, 0, 0],
+                        [1, 0, 0, 0, 3],
+                        [2, 0, 0, 7, 0],
+                        [0, 0, 7, 0, 1],
+                        [0, 3, 0, 1, 0]])
+    csgraph = csgraph_from_dense(csgraph, null_value=0)
+
+    dfirst = np.array([[0, 1, 0, 0, 0],
+                       [0, 0, 0, 0, 3],
+                       [0, 0, 0, 0, 0],
+                       [0, 0, 7, 0, 0],
+                       [0, 0, 0, 1, 0]])
+
+    for directed in [True, False]:
+        dfirst_test = depth_first_tree(csgraph, 0, directed)
+        assert_array_almost_equal(csgraph_to_dense(dfirst_test), dfirst)
+
+
+def test_return_type():
+    from .._laplacian import laplacian
+    from .._min_spanning_tree import minimum_spanning_tree
+
+    np_csgraph = np.array([[0, 1, 2, 0, 0],
+                           [1, 0, 0, 0, 3],
+                           [2, 0, 0, 7, 0],
+                           [0, 0, 7, 0, 1],
+                           [0, 3, 0, 1, 0]])
+    csgraph = csr_array(np_csgraph)
+    assert isinstance(laplacian(csgraph), coo_array)
+    assert isinstance(minimum_spanning_tree(csgraph), csr_array)
+    for directed in [True, False]:
+        assert isinstance(depth_first_tree(csgraph, 0, directed), csr_array)
+        assert isinstance(breadth_first_tree(csgraph, 0, directed), csr_array)
+
+    csgraph = csgraph_from_dense(np_csgraph, null_value=0)
+    assert isinstance(csgraph, csr_array)
+    assert isinstance(laplacian(csgraph), coo_array)
+    assert isinstance(minimum_spanning_tree(csgraph), csr_array)
+    for directed in [True, False]:
+        assert isinstance(depth_first_tree(csgraph, 0, directed), csr_array)
+        assert isinstance(breadth_first_tree(csgraph, 0, directed), csr_array)
+
+    csgraph = csgraph_masked_from_dense(np_csgraph, null_value=0)
+    assert isinstance(csgraph, np.ma.MaskedArray)
+    assert csgraph._baseclass is np.ndarray
+    # laplacian doesnt work with masked arrays so not here
+    assert isinstance(minimum_spanning_tree(csgraph), csr_array)
+    for directed in [True, False]:
+        assert isinstance(depth_first_tree(csgraph, 0, directed), csr_array)
+        assert isinstance(breadth_first_tree(csgraph, 0, directed), csr_array)
+
+    # start of testing with matrix/spmatrix types
+    with np.testing.suppress_warnings() as sup:
+        sup.filter(DeprecationWarning, "the matrix subclass.*")
+        sup.filter(PendingDeprecationWarning, "the matrix subclass.*")
+
+        nm_csgraph = np.matrix([[0, 1, 2, 0, 0],
+                                [1, 0, 0, 0, 3],
+                                [2, 0, 0, 7, 0],
+                                [0, 0, 7, 0, 1],
+                                [0, 3, 0, 1, 0]])
+
+    csgraph = csr_matrix(nm_csgraph)
+    assert isinstance(laplacian(csgraph), coo_matrix)
+    assert isinstance(minimum_spanning_tree(csgraph), csr_matrix)
+    for directed in [True, False]:
+        assert isinstance(depth_first_tree(csgraph, 0, directed), csr_matrix)
+        assert isinstance(breadth_first_tree(csgraph, 0, directed), csr_matrix)
+
+    csgraph = csgraph_from_dense(nm_csgraph, null_value=0)
+    assert isinstance(csgraph, csr_matrix)
+    assert isinstance(laplacian(csgraph), coo_matrix)
+    assert isinstance(minimum_spanning_tree(csgraph), csr_matrix)
+    for directed in [True, False]:
+        assert isinstance(depth_first_tree(csgraph, 0, directed), csr_matrix)
+        assert isinstance(breadth_first_tree(csgraph, 0, directed), csr_matrix)
+
+    mm_csgraph = csgraph_masked_from_dense(nm_csgraph, null_value=0)
+    assert isinstance(mm_csgraph, np.ma.MaskedArray)
+    # laplacian doesnt work with masked arrays so not here
+    assert isinstance(minimum_spanning_tree(csgraph), csr_matrix)
+    for directed in [True, False]:
+        assert isinstance(depth_first_tree(csgraph, 0, directed), csr_matrix)
+        assert isinstance(breadth_first_tree(csgraph, 0, directed), csr_matrix)
+    # end of testing with matrix/spmatrix types
+
+
+def test_graph_breadth_first_trivial_graph():
+    csgraph = np.array([[0]])
+    csgraph = csgraph_from_dense(csgraph, null_value=0)
+
+    bfirst = np.array([[0]])
+
+    for directed in [True, False]:
+        bfirst_test = breadth_first_tree(csgraph, 0, directed)
+        assert_array_almost_equal(csgraph_to_dense(bfirst_test), bfirst)
+
+
+def test_graph_depth_first_trivial_graph():
+    csgraph = np.array([[0]])
+    csgraph = csgraph_from_dense(csgraph, null_value=0)
+
+    bfirst = np.array([[0]])
+
+    for directed in [True, False]:
+        bfirst_test = depth_first_tree(csgraph, 0, directed)
+        assert_array_almost_equal(csgraph_to_dense(bfirst_test),
+                                  bfirst)
+
+
+@pytest.mark.parametrize('directed', [True, False])
+@pytest.mark.parametrize('tree_func', [breadth_first_tree, depth_first_tree])
+def test_int64_indices(tree_func, directed):
+    # See https://github.com/scipy/scipy/issues/18716
+    g = csr_array(([1], np.array([[0], [1]], dtype=np.int64)), shape=(2, 2))
+    assert g.indices.dtype == np.int64
+    tree = tree_func(g, 0, directed=directed)
+    assert_array_almost_equal(csgraph_to_dense(tree), [[0, 1], [0, 0]])
+

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/__init__.py

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+"""
+Sparse linear algebra (:mod:`scipy.sparse.linalg`)
+==================================================
+
+.. currentmodule:: scipy.sparse.linalg
+
+Abstract linear operators
+-------------------------
+
+.. autosummary::
+   :toctree: generated/
+
+   LinearOperator -- abstract representation of a linear operator
+   aslinearoperator -- convert an object to an abstract linear operator
+
+Matrix Operations
+-----------------
+
+.. autosummary::
+   :toctree: generated/
+
+   inv -- compute the sparse matrix inverse
+   expm -- compute the sparse matrix exponential
+   expm_multiply -- compute the product of a matrix exponential and a matrix
+   matrix_power -- compute the matrix power by raising a matrix to an exponent
+
+Matrix norms
+------------
+
+.. autosummary::
+   :toctree: generated/
+
+   norm -- Norm of a sparse matrix
+   onenormest -- Estimate the 1-norm of a sparse matrix
+
+Solving linear problems
+-----------------------
+
+Direct methods for linear equation systems:
+
+.. autosummary::
+   :toctree: generated/
+
+   spsolve -- Solve the sparse linear system Ax=b
+   spsolve_triangular -- Solve sparse linear system Ax=b for a triangular A.
+   is_sptriangular -- Check if sparse A is triangular.
+   spbandwidth -- Find the bandwidth of a sparse matrix.
+   factorized -- Pre-factorize matrix to a function solving a linear system
+   MatrixRankWarning -- Warning on exactly singular matrices
+   use_solver -- Select direct solver to use
+
+Iterative methods for linear equation systems:
+
+.. autosummary::
+   :toctree: generated/
+
+   bicg -- Use BIConjugate Gradient iteration to solve Ax = b
+   bicgstab -- Use BIConjugate Gradient STABilized iteration to solve Ax = b
+   cg -- Use Conjugate Gradient iteration to solve Ax = b
+   cgs -- Use Conjugate Gradient Squared iteration to solve Ax = b
+   gmres -- Use Generalized Minimal RESidual iteration to solve Ax = b
+   lgmres -- Solve a matrix equation using the LGMRES algorithm
+   minres -- Use MINimum RESidual iteration to solve Ax = b
+   qmr -- Use Quasi-Minimal Residual iteration to solve Ax = b
+   gcrotmk -- Solve a matrix equation using the GCROT(m,k) algorithm
+   tfqmr -- Use Transpose-Free Quasi-Minimal Residual iteration to solve Ax = b
+
+Iterative methods for least-squares problems:
+
+.. autosummary::
+   :toctree: generated/
+
+   lsqr -- Find the least-squares solution to a sparse linear equation system
+   lsmr -- Find the least-squares solution to a sparse linear equation system
+
+Matrix factorizations
+---------------------
+
+Eigenvalue problems:
+
+.. autosummary::
+   :toctree: generated/
+
+   eigs -- Find k eigenvalues and eigenvectors of the square matrix A
+   eigsh -- Find k eigenvalues and eigenvectors of a symmetric matrix
+   lobpcg -- Solve symmetric partial eigenproblems with optional preconditioning
+
+Singular values problems:
+
+.. autosummary::
+   :toctree: generated/
+
+   svds -- Compute k singular values/vectors for a sparse matrix
+
+The `svds` function supports the following solvers:
+
+.. toctree::
+
+    sparse.linalg.svds-arpack
+    sparse.linalg.svds-lobpcg
+    sparse.linalg.svds-propack
+
+Complete or incomplete LU factorizations
+
+.. autosummary::
+   :toctree: generated/
+
+   splu -- Compute a LU decomposition for a sparse matrix
+   spilu -- Compute an incomplete LU decomposition for a sparse matrix
+   SuperLU -- Object representing an LU factorization
+
+Sparse arrays with structure
+----------------------------
+
+.. autosummary::
+   :toctree: generated/
+
+   LaplacianNd -- Laplacian on a uniform rectangular grid in ``N`` dimensions
+
+Exceptions
+----------
+
+.. autosummary::
+   :toctree: generated/
+
+   ArpackNoConvergence
+   ArpackError
+
+"""
+
+from ._isolve import *
+from ._dsolve import *
+from ._interface import *
+from ._eigen import *
+from ._matfuncs import *
+from ._onenormest import *
+from ._norm import *
+from ._expm_multiply import *
+from ._special_sparse_arrays import *
+
+# Deprecated namespaces, to be removed in v2.0.0
+from . import isolve, dsolve, interface, eigen, matfuncs
+
+__all__ = [s for s in dir() if not s.startswith('_')]
+
+from scipy._lib._testutils import PytestTester
+test = PytestTester(__name__)
+del PytestTester

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_dsolve/__init__.py

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+"""
+Linear Solvers
+==============
+
+The default solver is SuperLU (included in the scipy distribution),
+which can solve real or complex linear systems in both single and
+double precisions.  It is automatically replaced by UMFPACK, if
+available.  Note that UMFPACK works in double precision only, so
+switch it off by::
+
+    >>> from scipy.sparse.linalg import spsolve, use_solver
+    >>> use_solver(useUmfpack=False)
+
+to solve in the single precision. See also use_solver documentation.
+
+Example session::
+
+    >>> from scipy.sparse import csc_array, dia_array
+    >>> from numpy import array
+    >>>
+    >>> print("Inverting a sparse linear system:")
+    >>> print("The sparse matrix (constructed from diagonals):")
+    >>> a = dia_array(([[1, 2, 3, 4, 5], [6, 5, 8, 9, 10]], [0, 1]), shape=(5, 5))
+    >>> b = array([1, 2, 3, 4, 5])
+    >>> print("Solve: single precision complex:")
+    >>> use_solver( useUmfpack = False )
+    >>> a = a.astype('F')
+    >>> x = spsolve(a, b)
+    >>> print(x)
+    >>> print("Error: ", a@x-b)
+    >>>
+    >>> print("Solve: double precision complex:")
+    >>> use_solver( useUmfpack = True )
+    >>> a = a.astype('D')
+    >>> x = spsolve(a, b)
+    >>> print(x)
+    >>> print("Error: ", a@x-b)
+    >>>
+    >>> print("Solve: double precision:")
+    >>> a = a.astype('d')
+    >>> x = spsolve(a, b)
+    >>> print(x)
+    >>> print("Error: ", a@x-b)
+    >>>
+    >>> print("Solve: single precision:")
+    >>> use_solver( useUmfpack = False )
+    >>> a = a.astype('f')
+    >>> x = spsolve(a, b.astype('f'))
+    >>> print(x)
+    >>> print("Error: ", a@x-b)
+
+"""
+
+#import umfpack
+#__doc__ = '\n\n'.join( (__doc__,  umfpack.__doc__) )
+#del umfpack
+
+from .linsolve import *
+from ._superlu import SuperLU
+from . import _add_newdocs
+from . import linsolve
+
+__all__ = [
+    'MatrixRankWarning', 'SuperLU', 'factorized',
+    'spilu', 'splu', 'spsolve', 'is_sptriangular',
+    'spsolve_triangular', 'use_solver', 'spbandwidth',
+]
+
+from scipy._lib._testutils import PytestTester
+test = PytestTester(__name__)
+del PytestTester

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_dsolve/_add_newdocs.py

@@ -0,0 +1,147 @@
+from numpy.lib import add_newdoc
+
+add_newdoc('scipy.sparse.linalg._dsolve._superlu', 'SuperLU',
+    """
+    LU factorization of a sparse matrix.
+
+    Factorization is represented as::
+
+        Pr @ A @ Pc = L @ U
+
+    To construct these `SuperLU` objects, call the `splu` and `spilu`
+    functions.
+
+    Attributes
+    ----------
+    shape
+    nnz
+    perm_c
+    perm_r
+    L
+    U
+
+    Methods
+    -------
+    solve
+
+    Notes
+    -----
+
+    .. versionadded:: 0.14.0
+
+    Examples
+    --------
+    The LU decomposition can be used to solve matrix equations. Consider:
+
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import splu
+    >>> A = csc_array([[1,2,0,4], [1,0,0,1], [1,0,2,1], [2,2,1,0.]])
+
+    This can be solved for a given right-hand side:
+
+    >>> lu = splu(A)
+    >>> b = np.array([1, 2, 3, 4])
+    >>> x = lu.solve(b)
+    >>> A.dot(x)
+    array([ 1.,  2.,  3.,  4.])
+
+    The ``lu`` object also contains an explicit representation of the
+    decomposition. The permutations are represented as mappings of
+    indices:
+
+    >>> lu.perm_r
+    array([2, 1, 3, 0], dtype=int32)  # may vary
+    >>> lu.perm_c
+    array([0, 1, 3, 2], dtype=int32)  # may vary
+
+    The L and U factors are sparse matrices in CSC format:
+
+    >>> lu.L.toarray()
+    array([[ 1. ,  0. ,  0. ,  0. ],  # may vary
+           [ 0.5,  1. ,  0. ,  0. ],
+           [ 0.5, -1. ,  1. ,  0. ],
+           [ 0.5,  1. ,  0. ,  1. ]])
+    >>> lu.U.toarray()
+    array([[ 2. ,  2. ,  0. ,  1. ],  # may vary
+           [ 0. , -1. ,  1. , -0.5],
+           [ 0. ,  0. ,  5. , -1. ],
+           [ 0. ,  0. ,  0. ,  2. ]])
+
+    The permutation matrices can be constructed:
+
+    >>> Pr = csc_array((np.ones(4), (lu.perm_r, np.arange(4))))
+    >>> Pc = csc_array((np.ones(4), (np.arange(4), lu.perm_c)))
+
+    We can reassemble the original matrix:
+
+    >>> (Pr.T @ (lu.L @ lu.U) @ Pc.T).toarray()
+    array([[ 1.,  2.,  0.,  4.],
+           [ 1.,  0.,  0.,  1.],
+           [ 1.,  0.,  2.,  1.],
+           [ 2.,  2.,  1.,  0.]])
+    """)
+
+add_newdoc('scipy.sparse.linalg._dsolve._superlu', 'SuperLU', ('solve',
+    """
+    solve(rhs[, trans])
+
+    Solves linear system of equations with one or several right-hand sides.
+
+    Parameters
+    ----------
+    rhs : ndarray, shape (n,) or (n, k)
+        Right hand side(s) of equation
+    trans : {'N', 'T', 'H'}, optional
+        Type of system to solve::
+
+            'N':   A   @ x == rhs  (default)
+            'T':   A^T @ x == rhs
+            'H':   A^H @ x == rhs
+
+        i.e., normal, transposed, and hermitian conjugate.
+
+    Returns
+    -------
+    x : ndarray, shape ``rhs.shape``
+        Solution vector(s)
+    """))
+
+add_newdoc('scipy.sparse.linalg._dsolve._superlu', 'SuperLU', ('L',
+    """
+    Lower triangular factor with unit diagonal as a
+    `scipy.sparse.csc_array`.
+
+    .. versionadded:: 0.14.0
+    """))
+
+add_newdoc('scipy.sparse.linalg._dsolve._superlu', 'SuperLU', ('U',
+    """
+    Upper triangular factor as a `scipy.sparse.csc_array`.
+
+    .. versionadded:: 0.14.0
+    """))
+
+add_newdoc('scipy.sparse.linalg._dsolve._superlu', 'SuperLU', ('shape',
+    """
+    Shape of the original matrix as a tuple of ints.
+    """))
+
+add_newdoc('scipy.sparse.linalg._dsolve._superlu', 'SuperLU', ('nnz',
+    """
+    Number of nonzero elements in the matrix.
+    """))
+
+add_newdoc('scipy.sparse.linalg._dsolve._superlu', 'SuperLU', ('perm_c',
+    """
+    Permutation Pc represented as an array of indices.
+
+    See the `SuperLU` docstring for details.
+    """))
+
+add_newdoc('scipy.sparse.linalg._dsolve._superlu', 'SuperLU', ('perm_r',
+    """
+    Permutation Pr represented as an array of indices.
+
+    See the `SuperLU` docstring for details.
+    """))

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py

@@ -0,0 +1,873 @@
+from warnings import warn, catch_warnings, simplefilter
+
+import numpy as np
+from numpy import asarray
+from scipy.sparse import (issparse, SparseEfficiencyWarning,
+                          csr_array, csc_array, eye_array, diags_array)
+from scipy.sparse._sputils import (is_pydata_spmatrix, convert_pydata_sparse_to_scipy,
+                                   get_index_dtype, safely_cast_index_arrays)
+from scipy.linalg import LinAlgError
+import copy
+import threading
+
+from . import _superlu
+
+noScikit = False
+try:
+    import scikits.umfpack as umfpack
+except ImportError:
+    noScikit = True
+
+useUmfpack = threading.local()
+
+
+__all__ = ['use_solver', 'spsolve', 'splu', 'spilu', 'factorized',
+           'MatrixRankWarning', 'spsolve_triangular', 'is_sptriangular', 'spbandwidth']
+
+
+class MatrixRankWarning(UserWarning):
+    pass
+
+
+def use_solver(**kwargs):
+    """
+    Select default sparse direct solver to be used.
+
+    Parameters
+    ----------
+    useUmfpack : bool, optional
+        Use UMFPACK [1]_, [2]_, [3]_, [4]_. over SuperLU. Has effect only
+        if ``scikits.umfpack`` is installed. Default: True
+    assumeSortedIndices : bool, optional
+        Allow UMFPACK to skip the step of sorting indices for a CSR/CSC matrix.
+        Has effect only if useUmfpack is True and ``scikits.umfpack`` is
+        installed. Default: False
+
+    Notes
+    -----
+    The default sparse solver is UMFPACK when available
+    (``scikits.umfpack`` is installed). This can be changed by passing
+    useUmfpack = False, which then causes the always present SuperLU
+    based solver to be used.
+
+    UMFPACK requires a CSR/CSC matrix to have sorted column/row indices. If
+    sure that the matrix fulfills this, pass ``assumeSortedIndices=True``
+    to gain some speed.
+
+    References
+    ----------
+    .. [1] T. A. Davis, Algorithm 832:  UMFPACK - an unsymmetric-pattern
+           multifrontal method with a column pre-ordering strategy, ACM
+           Trans. on Mathematical Software, 30(2), 2004, pp. 196--199.
+           https://dl.acm.org/doi/abs/10.1145/992200.992206
+
+    .. [2] T. A. Davis, A column pre-ordering strategy for the
+           unsymmetric-pattern multifrontal method, ACM Trans.
+           on Mathematical Software, 30(2), 2004, pp. 165--195.
+           https://dl.acm.org/doi/abs/10.1145/992200.992205
+
+    .. [3] T. A. Davis and I. S. Duff, A combined unifrontal/multifrontal
+           method for unsymmetric sparse matrices, ACM Trans. on
+           Mathematical Software, 25(1), 1999, pp. 1--19.
+           https://doi.org/10.1145/305658.287640
+
+    .. [4] T. A. Davis and I. S. Duff, An unsymmetric-pattern multifrontal
+           method for sparse LU factorization, SIAM J. Matrix Analysis and
+           Computations, 18(1), 1997, pp. 140--158.
+           https://doi.org/10.1137/S0895479894246905T.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg import use_solver, spsolve
+    >>> from scipy.sparse import csc_array
+    >>> R = np.random.randn(5, 5)
+    >>> A = csc_array(R)
+    >>> b = np.random.randn(5)
+    >>> use_solver(useUmfpack=False) # enforce superLU over UMFPACK
+    >>> x = spsolve(A, b)
+    >>> np.allclose(A.dot(x), b)
+    True
+    >>> use_solver(useUmfpack=True) # reset umfPack usage to default
+    """
+    global useUmfpack
+    if 'useUmfpack' in kwargs:
+        useUmfpack.u = kwargs['useUmfpack']
+    if useUmfpack.u and 'assumeSortedIndices' in kwargs:
+        umfpack.configure(assumeSortedIndices=kwargs['assumeSortedIndices'])
+
+def _get_umf_family(A):
+    """Get umfpack family string given the sparse matrix dtype."""
+    _families = {
+        (np.float64, np.int32): 'di',
+        (np.complex128, np.int32): 'zi',
+        (np.float64, np.int64): 'dl',
+        (np.complex128, np.int64): 'zl'
+    }
+
+    # A.dtype.name can only be "float64" or
+    # "complex128" in control flow
+    f_type = getattr(np, A.dtype.name)
+    # control flow may allow for more index
+    # types to get through here
+    i_type = getattr(np, A.indices.dtype.name)
+
+    try:
+        family = _families[(f_type, i_type)]
+
+    except KeyError as e:
+        msg = ('only float64 or complex128 matrices with int32 or int64 '
+               f'indices are supported! (got: matrix: {f_type}, indices: {i_type})')
+        raise ValueError(msg) from e
+
+    # See gh-8278. Considered converting only if
+    # A.shape[0]*A.shape[1] > np.iinfo(np.int32).max,
+    # but that didn't always fix the issue.
+    family = family[0] + "l"
+    A_new = copy.copy(A)
+    A_new.indptr = np.asarray(A.indptr, dtype=np.int64)
+    A_new.indices = np.asarray(A.indices, dtype=np.int64)
+
+    return family, A_new
+
+def spsolve(A, b, permc_spec=None, use_umfpack=True):
+    """Solve the sparse linear system Ax=b, where b may be a vector or a matrix.
+
+    Parameters
+    ----------
+    A : ndarray or sparse array or matrix
+        The square matrix A will be converted into CSC or CSR form
+    b : ndarray or sparse array or matrix
+        The matrix or vector representing the right hand side of the equation.
+        If a vector, b.shape must be (n,) or (n, 1).
+    permc_spec : str, optional
+        How to permute the columns of the matrix for sparsity preservation.
+        (default: 'COLAMD')
+
+        - ``NATURAL``: natural ordering.
+        - ``MMD_ATA``: minimum degree ordering on the structure of A^T A.
+        - ``MMD_AT_PLUS_A``: minimum degree ordering on the structure of A^T+A.
+        - ``COLAMD``: approximate minimum degree column ordering [1]_, [2]_.
+
+    use_umfpack : bool, optional
+        if True (default) then use UMFPACK for the solution [3]_, [4]_, [5]_,
+        [6]_ . This is only referenced if b is a vector and
+        ``scikits.umfpack`` is installed.
+
+    Returns
+    -------
+    x : ndarray or sparse array or matrix
+        the solution of the sparse linear equation.
+        If b is a vector, then x is a vector of size A.shape[1]
+        If b is a matrix, then x is a matrix of size (A.shape[1], b.shape[1])
+
+    Notes
+    -----
+    For solving the matrix expression AX = B, this solver assumes the resulting
+    matrix X is sparse, as is often the case for very sparse inputs.  If the
+    resulting X is dense, the construction of this sparse result will be
+    relatively expensive.  In that case, consider converting A to a dense
+    matrix and using scipy.linalg.solve or its variants.
+
+    References
+    ----------
+    .. [1] T. A. Davis, J. R. Gilbert, S. Larimore, E. Ng, Algorithm 836:
+           COLAMD, an approximate column minimum degree ordering algorithm,
+           ACM Trans. on Mathematical Software, 30(3), 2004, pp. 377--380.
+           :doi:`10.1145/1024074.1024080`
+
+    .. [2] T. A. Davis, J. R. Gilbert, S. Larimore, E. Ng, A column approximate
+           minimum degree ordering algorithm, ACM Trans. on Mathematical
+           Software, 30(3), 2004, pp. 353--376. :doi:`10.1145/1024074.1024079`
+
+    .. [3] T. A. Davis, Algorithm 832:  UMFPACK - an unsymmetric-pattern
+           multifrontal method with a column pre-ordering strategy, ACM
+           Trans. on Mathematical Software, 30(2), 2004, pp. 196--199.
+           https://dl.acm.org/doi/abs/10.1145/992200.992206
+
+    .. [4] T. A. Davis, A column pre-ordering strategy for the
+           unsymmetric-pattern multifrontal method, ACM Trans.
+           on Mathematical Software, 30(2), 2004, pp. 165--195.
+           https://dl.acm.org/doi/abs/10.1145/992200.992205
+
+    .. [5] T. A. Davis and I. S. Duff, A combined unifrontal/multifrontal
+           method for unsymmetric sparse matrices, ACM Trans. on
+           Mathematical Software, 25(1), 1999, pp. 1--19.
+           https://doi.org/10.1145/305658.287640
+
+    .. [6] T. A. Davis and I. S. Duff, An unsymmetric-pattern multifrontal
+           method for sparse LU factorization, SIAM J. Matrix Analysis and
+           Computations, 18(1), 1997, pp. 140--158.
+           https://doi.org/10.1137/S0895479894246905T.
+
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import spsolve
+    >>> A = csc_array([[3, 2, 0], [1, -1, 0], [0, 5, 1]], dtype=float)
+    >>> B = csc_array([[2, 0], [-1, 0], [2, 0]], dtype=float)
+    >>> x = spsolve(A, B)
+    >>> np.allclose(A.dot(x).toarray(), B.toarray())
+    True
+    """
+    is_pydata_sparse = is_pydata_spmatrix(b)
+    pydata_sparse_cls = b.__class__ if is_pydata_sparse else None
+    A = convert_pydata_sparse_to_scipy(A)
+    b = convert_pydata_sparse_to_scipy(b)
+
+    if not (issparse(A) and A.format in ("csc", "csr")):
+        A = csc_array(A)
+        warn('spsolve requires A be CSC or CSR matrix format',
+             SparseEfficiencyWarning, stacklevel=2)
+
+    # b is a vector only if b have shape (n,) or (n, 1)
+    b_is_sparse = issparse(b)
+    if not b_is_sparse:
+        b = asarray(b)
+    b_is_vector = ((b.ndim == 1) or (b.ndim == 2 and b.shape[1] == 1))
+
+    # sum duplicates for non-canonical format
+    A.sum_duplicates()
+    A = A._asfptype()  # upcast to a floating point format
+    result_dtype = np.promote_types(A.dtype, b.dtype)
+    if A.dtype != result_dtype:
+        A = A.astype(result_dtype)
+    if b.dtype != result_dtype:
+        b = b.astype(result_dtype)
+
+    # validate input shapes
+    M, N = A.shape
+    if (M != N):
+        raise ValueError(f"matrix must be square (has shape {(M, N)})")
+
+    if M != b.shape[0]:
+        raise ValueError(f"matrix - rhs dimension mismatch ({A.shape} - {b.shape[0]})")
+
+    if not hasattr(useUmfpack, 'u'):
+        useUmfpack.u = not noScikit
+
+    use_umfpack = use_umfpack and useUmfpack.u
+
+    if b_is_vector and use_umfpack:
+        if b_is_sparse:
+            b_vec = b.toarray()
+        else:
+            b_vec = b
+        b_vec = asarray(b_vec, dtype=A.dtype).ravel()
+
+        if noScikit:
+            raise RuntimeError('Scikits.umfpack not installed.')
+
+        if A.dtype.char not in 'dD':
+            raise ValueError("convert matrix data to double, please, using"
+                  " .astype(), or set linsolve.useUmfpack.u = False")
+
+        umf_family, A = _get_umf_family(A)
+        umf = umfpack.UmfpackContext(umf_family)
+        x = umf.linsolve(umfpack.UMFPACK_A, A, b_vec,
+                         autoTranspose=True)
+    else:
+        if b_is_vector and b_is_sparse:
+            b = b.toarray()
+            b_is_sparse = False
+
+        if not b_is_sparse:
+            if A.format == "csc":
+                flag = 1  # CSC format
+            else:
+                flag = 0  # CSR format
+
+            indices = A.indices.astype(np.intc, copy=False)
+            indptr = A.indptr.astype(np.intc, copy=False)
+            options = dict(ColPerm=permc_spec)
+            x, info = _superlu.gssv(N, A.nnz, A.data, indices, indptr,
+                                    b, flag, options=options)
+            if info != 0:
+                warn("Matrix is exactly singular", MatrixRankWarning, stacklevel=2)
+                x.fill(np.nan)
+            if b_is_vector:
+                x = x.ravel()
+        else:
+            # b is sparse
+            Afactsolve = factorized(A)
+
+            if not (b.format == "csc" or is_pydata_spmatrix(b)):
+                warn('spsolve is more efficient when sparse b '
+                     'is in the CSC matrix format',
+                     SparseEfficiencyWarning, stacklevel=2)
+                b = csc_array(b)
+
+            # Create a sparse output matrix by repeatedly applying
+            # the sparse factorization to solve columns of b.
+            data_segs = []
+            row_segs = []
+            col_segs = []
+            for j in range(b.shape[1]):
+                bj = b[:, j].toarray().ravel()
+                xj = Afactsolve(bj)
+                w = np.flatnonzero(xj)
+                segment_length = w.shape[0]
+                row_segs.append(w)
+                col_segs.append(np.full(segment_length, j, dtype=int))
+                data_segs.append(np.asarray(xj[w], dtype=A.dtype))
+            sparse_data = np.concatenate(data_segs)
+            idx_dtype = get_index_dtype(maxval=max(b.shape))
+            sparse_row = np.concatenate(row_segs, dtype=idx_dtype)
+            sparse_col = np.concatenate(col_segs, dtype=idx_dtype)
+            x = A.__class__((sparse_data, (sparse_row, sparse_col)),
+                           shape=b.shape, dtype=A.dtype)
+
+            if is_pydata_sparse:
+                x = pydata_sparse_cls.from_scipy_sparse(x)
+
+    return x
+
+
+def splu(A, permc_spec=None, diag_pivot_thresh=None,
+         relax=None, panel_size=None, options=None):
+    """
+    Compute the LU decomposition of a sparse, square matrix.
+
+    Parameters
+    ----------
+    A : sparse array or matrix
+        Sparse array to factorize. Most efficient when provided in CSC
+        format. Other formats will be converted to CSC before factorization.
+    permc_spec : str, optional
+        How to permute the columns of the matrix for sparsity preservation.
+        (default: 'COLAMD')
+
+        - ``NATURAL``: natural ordering.
+        - ``MMD_ATA``: minimum degree ordering on the structure of A^T A.
+        - ``MMD_AT_PLUS_A``: minimum degree ordering on the structure of A^T+A.
+        - ``COLAMD``: approximate minimum degree column ordering
+
+    diag_pivot_thresh : float, optional
+        Threshold used for a diagonal entry to be an acceptable pivot.
+        See SuperLU user's guide for details [1]_
+    relax : int, optional
+        Expert option for customizing the degree of relaxing supernodes.
+        See SuperLU user's guide for details [1]_
+    panel_size : int, optional
+        Expert option for customizing the panel size.
+        See SuperLU user's guide for details [1]_
+    options : dict, optional
+        Dictionary containing additional expert options to SuperLU.
+        See SuperLU user guide [1]_ (section 2.4 on the 'Options' argument)
+        for more details. For example, you can specify
+        ``options=dict(Equil=False, IterRefine='SINGLE'))``
+        to turn equilibration off and perform a single iterative refinement.
+
+    Returns
+    -------
+    invA : scipy.sparse.linalg.SuperLU
+        Object, which has a ``solve`` method.
+
+    See also
+    --------
+    spilu : incomplete LU decomposition
+
+    Notes
+    -----
+    This function uses the SuperLU library.
+
+    References
+    ----------
+    .. [1] SuperLU https://portal.nersc.gov/project/sparse/superlu/
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import splu
+    >>> A = csc_array([[1., 0., 0.], [5., 0., 2.], [0., -1., 0.]], dtype=float)
+    >>> B = splu(A)
+    >>> x = np.array([1., 2., 3.], dtype=float)
+    >>> B.solve(x)
+    array([ 1. , -3. , -1.5])
+    >>> A.dot(B.solve(x))
+    array([ 1.,  2.,  3.])
+    >>> B.solve(A.dot(x))
+    array([ 1.,  2.,  3.])
+    """
+
+    if is_pydata_spmatrix(A):
+        A_cls = type(A)
+        def csc_construct_func(*a, cls=A_cls):
+            return cls.from_scipy_sparse(csc_array(*a))
+        A = A.to_scipy_sparse().tocsc()
+    else:
+        csc_construct_func = csc_array
+
+    if not (issparse(A) and A.format == "csc"):
+        A = csc_array(A)
+        warn('splu converted its input to CSC format',
+             SparseEfficiencyWarning, stacklevel=2)
+
+    # sum duplicates for non-canonical format
+    A.sum_duplicates()
+    A = A._asfptype()  # upcast to a floating point format
+
+    M, N = A.shape
+    if (M != N):
+        raise ValueError("can only factor square matrices")  # is this true?
+
+    indices, indptr = safely_cast_index_arrays(A, np.intc, "SuperLU")
+
+    _options = dict(DiagPivotThresh=diag_pivot_thresh, ColPerm=permc_spec,
+                    PanelSize=panel_size, Relax=relax)
+    if options is not None:
+        _options.update(options)
+
+    # Ensure that no column permutations are applied
+    if (_options["ColPerm"] == "NATURAL"):
+        _options["SymmetricMode"] = True
+
+    return _superlu.gstrf(N, A.nnz, A.data, indices, indptr,
+                          csc_construct_func=csc_construct_func,
+                          ilu=False, options=_options)
+
+
+def spilu(A, drop_tol=None, fill_factor=None, drop_rule=None, permc_spec=None,
+          diag_pivot_thresh=None, relax=None, panel_size=None, options=None):
+    """
+    Compute an incomplete LU decomposition for a sparse, square matrix.
+
+    The resulting object is an approximation to the inverse of `A`.
+
+    Parameters
+    ----------
+    A : (N, N) array_like
+        Sparse array to factorize. Most efficient when provided in CSC format.
+        Other formats will be converted to CSC before factorization.
+    drop_tol : float, optional
+        Drop tolerance (0 <= tol <= 1) for an incomplete LU decomposition.
+        (default: 1e-4)
+    fill_factor : float, optional
+        Specifies the fill ratio upper bound (>= 1.0) for ILU. (default: 10)
+    drop_rule : str, optional
+        Comma-separated string of drop rules to use.
+        Available rules: ``basic``, ``prows``, ``column``, ``area``,
+        ``secondary``, ``dynamic``, ``interp``. (Default: ``basic,area``)
+
+        See SuperLU documentation for details.
+
+    Remaining other options
+        Same as for `splu`
+
+    Returns
+    -------
+    invA_approx : scipy.sparse.linalg.SuperLU
+        Object, which has a ``solve`` method.
+
+    See also
+    --------
+    splu : complete LU decomposition
+
+    Notes
+    -----
+    To improve the better approximation to the inverse, you may need to
+    increase `fill_factor` AND decrease `drop_tol`.
+
+    This function uses the SuperLU library.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import spilu
+    >>> A = csc_array([[1., 0., 0.], [5., 0., 2.], [0., -1., 0.]], dtype=float)
+    >>> B = spilu(A)
+    >>> x = np.array([1., 2., 3.], dtype=float)
+    >>> B.solve(x)
+    array([ 1. , -3. , -1.5])
+    >>> A.dot(B.solve(x))
+    array([ 1.,  2.,  3.])
+    >>> B.solve(A.dot(x))
+    array([ 1.,  2.,  3.])
+    """
+
+    if is_pydata_spmatrix(A):
+        A_cls = type(A)
+        def csc_construct_func(*a, cls=A_cls):
+            return cls.from_scipy_sparse(csc_array(*a))
+        A = A.to_scipy_sparse().tocsc()
+    else:
+        csc_construct_func = csc_array
+
+    if not (issparse(A) and A.format == "csc"):
+        A = csc_array(A)
+        warn('spilu converted its input to CSC format',
+             SparseEfficiencyWarning, stacklevel=2)
+
+    # sum duplicates for non-canonical format
+    A.sum_duplicates()
+    A = A._asfptype()  # upcast to a floating point format
+
+    M, N = A.shape
+    if (M != N):
+        raise ValueError("can only factor square matrices")  # is this true?
+
+    indices, indptr = safely_cast_index_arrays(A, np.intc, "SuperLU")
+
+    _options = dict(ILU_DropRule=drop_rule, ILU_DropTol=drop_tol,
+                    ILU_FillFactor=fill_factor,
+                    DiagPivotThresh=diag_pivot_thresh, ColPerm=permc_spec,
+                    PanelSize=panel_size, Relax=relax)
+    if options is not None:
+        _options.update(options)
+
+    # Ensure that no column permutations are applied
+    if (_options["ColPerm"] == "NATURAL"):
+        _options["SymmetricMode"] = True
+
+    return _superlu.gstrf(N, A.nnz, A.data, indices, indptr,
+                          csc_construct_func=csc_construct_func,
+                          ilu=True, options=_options)
+
+
+def factorized(A):
+    """
+    Return a function for solving a sparse linear system, with A pre-factorized.
+
+    Parameters
+    ----------
+    A : (N, N) array_like
+        Input. A in CSC format is most efficient. A CSR format matrix will
+        be converted to CSC before factorization.
+
+    Returns
+    -------
+    solve : callable
+        To solve the linear system of equations given in `A`, the `solve`
+        callable should be passed an ndarray of shape (N,).
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg import factorized
+    >>> from scipy.sparse import csc_array
+    >>> A = np.array([[ 3. ,  2. , -1. ],
+    ...               [ 2. , -2. ,  4. ],
+    ...               [-1. ,  0.5, -1. ]])
+    >>> solve = factorized(csc_array(A)) # Makes LU decomposition.
+    >>> rhs1 = np.array([1, -2, 0])
+    >>> solve(rhs1) # Uses the LU factors.
+    array([ 1., -2., -2.])
+
+    """
+    if is_pydata_spmatrix(A):
+        A = A.to_scipy_sparse().tocsc()
+
+    if not hasattr(useUmfpack, 'u'):
+        useUmfpack.u = not noScikit
+
+    if useUmfpack.u:
+        if noScikit:
+            raise RuntimeError('Scikits.umfpack not installed.')
+
+        if not (issparse(A) and A.format == "csc"):
+            A = csc_array(A)
+            warn('splu converted its input to CSC format',
+                 SparseEfficiencyWarning, stacklevel=2)
+
+        A = A._asfptype()  # upcast to a floating point format
+
+        if A.dtype.char not in 'dD':
+            raise ValueError("convert matrix data to double, please, using"
+                  " .astype(), or set linsolve.useUmfpack.u = False")
+
+        umf_family, A = _get_umf_family(A)
+        umf = umfpack.UmfpackContext(umf_family)
+
+        # Make LU decomposition.
+        umf.numeric(A)
+
+        def solve(b):
+            with np.errstate(divide="ignore", invalid="ignore"):
+                # Ignoring warnings with numpy >= 1.23.0, see gh-16523
+                result = umf.solve(umfpack.UMFPACK_A, A, b, autoTranspose=True)
+
+            return result
+
+        return solve
+    else:
+        return splu(A).solve
+
+
+def spsolve_triangular(A, b, lower=True, overwrite_A=False, overwrite_b=False,
+                       unit_diagonal=False):
+    """
+    Solve the equation ``A x = b`` for `x`, assuming A is a triangular matrix.
+
+    Parameters
+    ----------
+    A : (M, M) sparse array or matrix
+        A sparse square triangular matrix. Should be in CSR or CSC format.
+    b : (M,) or (M, N) array_like
+        Right-hand side matrix in ``A x = b``
+    lower : bool, optional
+        Whether `A` is a lower or upper triangular matrix.
+        Default is lower triangular matrix.
+    overwrite_A : bool, optional
+        Allow changing `A`.
+        Enabling gives a performance gain. Default is False.
+    overwrite_b : bool, optional
+        Allow overwriting data in `b`.
+        Enabling gives a performance gain. Default is False.
+        If `overwrite_b` is True, it should be ensured that
+        `b` has an appropriate dtype to be able to store the result.
+    unit_diagonal : bool, optional
+        If True, diagonal elements of `a` are assumed to be 1.
+
+        .. versionadded:: 1.4.0
+
+    Returns
+    -------
+    x : (M,) or (M, N) ndarray
+        Solution to the system ``A x = b``. Shape of return matches shape
+        of `b`.
+
+    Raises
+    ------
+    LinAlgError
+        If `A` is singular or not triangular.
+    ValueError
+        If shape of `A` or shape of `b` do not match the requirements.
+
+    Notes
+    -----
+    .. versionadded:: 0.19.0
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import spsolve_triangular
+    >>> A = csc_array([[3, 0, 0], [1, -1, 0], [2, 0, 1]], dtype=float)
+    >>> B = np.array([[2, 0], [-1, 0], [2, 0]], dtype=float)
+    >>> x = spsolve_triangular(A, B)
+    >>> np.allclose(A.dot(x), B)
+    True
+    """
+
+    if is_pydata_spmatrix(A):
+        A = A.to_scipy_sparse().tocsc()
+
+    trans = "N"
+    if issparse(A) and A.format == "csr":
+        A = A.T
+        trans = "T"
+        lower = not lower
+
+    if not (issparse(A) and A.format == "csc"):
+        warn('CSC or CSR matrix format is required. Converting to CSC matrix.',
+             SparseEfficiencyWarning, stacklevel=2)
+        A = csc_array(A)
+    elif not overwrite_A:
+        A = A.copy()
+
+
+    M, N = A.shape
+    if M != N:
+        raise ValueError(
+            f'A must be a square matrix but its shape is {A.shape}.')
+
+    if unit_diagonal:
+        with catch_warnings():
+            simplefilter('ignore', SparseEfficiencyWarning)
+            A.setdiag(1)
+    else:
+        diag = A.diagonal()
+        if np.any(diag == 0):
+            raise LinAlgError(
+                'A is singular: zero entry on diagonal.')
+        invdiag = 1/diag
+        if trans == "N":
+            A = A @ diags_array(invdiag)
+        else:
+            A = (A.T @ diags_array(invdiag)).T
+
+    # sum duplicates for non-canonical format
+    A.sum_duplicates()
+
+    b = np.asanyarray(b)
+
+    if b.ndim not in [1, 2]:
+        raise ValueError(
+            f'b must have 1 or 2 dims but its shape is {b.shape}.')
+    if M != b.shape[0]:
+        raise ValueError(
+            'The size of the dimensions of A must be equal to '
+            'the size of the first dimension of b but the shape of A is '
+            f'{A.shape} and the shape of b is {b.shape}.'
+        )
+
+    result_dtype = np.promote_types(np.promote_types(A.dtype, np.float32), b.dtype)
+    if A.dtype != result_dtype:
+        A = A.astype(result_dtype)
+    if b.dtype != result_dtype:
+        b = b.astype(result_dtype)
+    elif not overwrite_b:
+        b = b.copy()
+
+    if lower:
+        L = A
+        U = csc_array((N, N), dtype=result_dtype)
+    else:
+        L = eye_array(N, dtype=result_dtype, format='csc')
+        U = A
+        U.setdiag(0)
+
+    x, info = _superlu.gstrs(trans,
+                             N, L.nnz, L.data, L.indices, L.indptr,
+                             N, U.nnz, U.data, U.indices, U.indptr,
+                             b)
+    if info:
+        raise LinAlgError('A is singular.')
+
+    if not unit_diagonal:
+        invdiag = invdiag.reshape(-1, *([1] * (len(x.shape) - 1)))
+        x = x * invdiag
+
+    return x
+
+
+def is_sptriangular(A):
+    """Returns 2-tuple indicating lower/upper triangular structure for sparse ``A``
+
+    Checks for triangular structure in ``A``. The result is summarized in
+    two boolean values ``lower`` and ``upper`` to designate whether ``A`` is
+    lower triangular or upper triangular respectively. Diagonal ``A`` will
+    result in both being True. Non-triangular structure results in False for both.
+
+    Only the sparse structure is used here. Values are not checked for zeros.
+
+    This function will convert a copy of ``A`` to CSC format if it is not already
+    CSR or CSC format. So it may be more efficient to convert it yourself if you
+    have other uses for the CSR/CSC version.
+
+    If ``A`` is not square, the portions outside the upper left square of the
+    matrix do not affect its triangular structure. You probably want to work
+    with the square portion of the matrix, though it is not requred here.
+
+    Parameters
+    ----------
+    A : SciPy sparse array or matrix
+        A sparse matrix preferrably in CSR or CSC format.
+
+    Returns
+    -------
+    lower, upper : 2-tuple of bool
+
+        .. versionadded:: 1.15.0
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array, eye_array
+    >>> from scipy.sparse.linalg import is_sptriangular
+    >>> A = csc_array([[3, 0, 0], [1, -1, 0], [2, 0, 1]], dtype=float)
+    >>> is_sptriangular(A)
+    (True, False)
+    >>> D = eye_array(3, format='csr')
+    >>> is_sptriangular(D)
+    (True, True)
+    """
+    if not (issparse(A) and A.format in ("csc", "csr", "coo", "dia", "dok", "lil")):
+        warn('is_sptriangular needs sparse and not BSR format. Converting to CSR.',
+             SparseEfficiencyWarning, stacklevel=2)
+        A = csr_array(A)
+
+    # bsr is better off converting to csr
+    if A.format == "dia":
+        return A.offsets.max() <= 0, A.offsets.min() >= 0
+    elif A.format == "coo":
+        rows, cols = A.coords
+        return (cols <= rows).all(), (cols >= rows).all()
+    elif A.format == "dok":
+        return all(c <= r for r, c in A.keys()), all(c >= r for r, c in A.keys())
+    elif A.format == "lil":
+        lower = all(col <= row for row, cols in enumerate(A.rows) for col in cols)
+        upper = all(col >= row for row, cols in enumerate(A.rows) for col in cols)
+        return lower, upper
+    # format in ("csc", "csr")
+    indptr, indices = A.indptr, A.indices
+    N = len(indptr) - 1
+
+    lower, upper = True, True
+    # check middle, 1st, last col (treat as CSC and switch at end if CSR)
+    for col in [N // 2, 0, -1]:
+        rows = indices[indptr[col]:indptr[col + 1]]
+        upper = upper and (col >= rows).all()
+        lower = lower and (col <= rows).all()
+        if not upper and not lower:
+            return False, False
+    # check all cols
+    cols = np.repeat(np.arange(N), np.diff(indptr))
+    rows = indices
+    upper = upper and (cols >= rows).all()
+    lower = lower and (cols <= rows).all()
+    if A.format == 'csr':
+        return upper, lower
+    return lower, upper
+
+
+def spbandwidth(A):
+    """Return the lower and upper bandwidth of a 2D numeric array.
+
+    Computes the lower and upper limits on the bandwidth of the
+    sparse 2D array ``A``. The result is summarized as a 2-tuple
+    of positive integers ``(lo, hi)``. A zero denotes no sub/super
+    diagonal entries on that side (tringular). The maximum value
+    for ``lo``(``hi``) is one less than the number of rows(cols).
+
+    Only the sparse structure is used here. Values are not checked for zeros.
+
+    Parameters
+    ----------
+    A : SciPy sparse array or matrix
+        A sparse matrix preferrably in CSR or CSC format.
+
+    Returns
+    -------
+    below, above : 2-tuple of int
+        The distance to the farthest non-zero diagonal below/above the
+        main diagonal.
+
+        .. versionadded:: 1.15.0
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg import spbandwidth
+    >>> from scipy.sparse import csc_array, eye_array
+    >>> A = csc_array([[3, 0, 0], [1, -1, 0], [2, 0, 1]], dtype=float)
+    >>> spbandwidth(A)
+    (2, 0)
+    >>> D = eye_array(3, format='csr')
+    >>> spbandwidth(D)
+    (0, 0)
+    """
+    if not (issparse(A) and A.format in ("csc", "csr", "coo", "dia", "dok")):
+        warn('spbandwidth needs sparse format not LIL and BSR. Converting to CSR.',
+             SparseEfficiencyWarning, stacklevel=2)
+        A = csr_array(A)
+
+    # bsr and lil are better off converting to csr
+    if A.format == "dia":
+        return max(0, -A.offsets.min().item()), max(0, A.offsets.max().item())
+    if A.format in ("csc", "csr"):
+        indptr, indices = A.indptr, A.indices
+        N = len(indptr) - 1
+        gap = np.repeat(np.arange(N), np.diff(indptr)) - indices
+        if A.format == 'csr':
+            gap = -gap
+    elif A.format == "coo":
+        gap = A.coords[1] - A.coords[0]
+    elif A.format == "dok":
+        gap = [(c - r) for r, c in A.keys()] + [0]
+        return -min(gap), max(gap)
+    return max(-np.min(gap).item(), 0), max(np.max(gap).item(), 0)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_dsolve/tests/test_linsolve.py

@@ -0,0 +1,921 @@
+import sys
+import threading
+
+import numpy as np
+from numpy import array, finfo, arange, eye, all, unique, ones, dot
+import numpy.random as random
+from numpy.testing import (
+        assert_array_almost_equal, assert_almost_equal,
+        assert_equal, assert_array_equal, assert_, assert_allclose,
+        assert_warns, suppress_warnings)
+import pytest
+from pytest import raises as assert_raises
+
+import scipy.linalg
+from scipy.linalg import norm, inv
+from scipy.sparse import (dia_array, SparseEfficiencyWarning, csc_array,
+        csr_array, eye_array, issparse, dok_array, lil_array, bsr_array, kron)
+from scipy.sparse.linalg import SuperLU
+from scipy.sparse.linalg._dsolve import (spsolve, use_solver, splu, spilu,
+        MatrixRankWarning, _superlu, spsolve_triangular, factorized,
+        is_sptriangular, spbandwidth)
+import scipy.sparse
+
+from scipy._lib._testutils import check_free_memory
+from scipy._lib._util import ComplexWarning
+
+
+sup_sparse_efficiency = suppress_warnings()
+sup_sparse_efficiency.filter(SparseEfficiencyWarning)
+
+# scikits.umfpack is not a SciPy dependency but it is optionally used in
+# dsolve, so check whether it's available
+try:
+    import scikits.umfpack as umfpack
+    has_umfpack = True
+except ImportError:
+    has_umfpack = False
+
+def toarray(a):
+    if issparse(a):
+        return a.toarray()
+    else:
+        return a
+
+
+def setup_bug_8278():
+    N = 2 ** 6
+    h = 1/N
+    Ah1D = dia_array(([-1, 2, -1], [-1, 0, 1]), shape=(N-1, N-1))/(h**2)
+    eyeN = eye_array(N - 1)
+    A = (kron(eyeN, kron(eyeN, Ah1D))
+         + kron(eyeN, kron(Ah1D, eyeN))
+         + kron(Ah1D, kron(eyeN, eyeN)))
+    b = np.random.rand((N-1)**3)
+    return A, b
+
+
+class TestFactorized:
+    def setup_method(self):
+        n = 5
+        d = arange(n) + 1
+        self.n = n
+        self.A = dia_array(((d, 2*d, d[::-1]), (-3, 0, 5)), shape=(n,n)).tocsc()
+        random.seed(1234)
+
+    def _check_singular(self):
+        A = csc_array((5,5), dtype='d')
+        b = ones(5)
+        assert_array_almost_equal(0. * b, factorized(A)(b))
+
+    def _check_non_singular(self):
+        # Make a diagonal dominant, to make sure it is not singular
+        n = 5
+        a = csc_array(random.rand(n, n))
+        b = ones(n)
+
+        expected = splu(a).solve(b)
+        assert_array_almost_equal(factorized(a)(b), expected)
+
+    def test_singular_without_umfpack(self):
+        use_solver(useUmfpack=False)
+        with assert_raises(RuntimeError, match="Factor is exactly singular"):
+            self._check_singular()
+
+    @pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
+    def test_singular_with_umfpack(self):
+        use_solver(useUmfpack=True)
+        with suppress_warnings() as sup:
+            sup.filter(RuntimeWarning, "divide by zero encountered in double_scalars")
+            assert_warns(umfpack.UmfpackWarning, self._check_singular)
+
+    def test_non_singular_without_umfpack(self):
+        use_solver(useUmfpack=False)
+        self._check_non_singular()
+
+    @pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
+    def test_non_singular_with_umfpack(self):
+        use_solver(useUmfpack=True)
+        self._check_non_singular()
+
+    def test_cannot_factorize_nonsquare_matrix_without_umfpack(self):
+        use_solver(useUmfpack=False)
+        msg = "can only factor square matrices"
+        with assert_raises(ValueError, match=msg):
+            factorized(self.A[:, :4])
+
+    @pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
+    def test_factorizes_nonsquare_matrix_with_umfpack(self):
+        use_solver(useUmfpack=True)
+        # does not raise
+        factorized(self.A[:,:4])
+
+    def test_call_with_incorrectly_sized_matrix_without_umfpack(self):
+        use_solver(useUmfpack=False)
+        solve = factorized(self.A)
+        b = random.rand(4)
+        B = random.rand(4, 3)
+        BB = random.rand(self.n, 3, 9)
+
+        with assert_raises(ValueError, match="is of incompatible size"):
+            solve(b)
+        with assert_raises(ValueError, match="is of incompatible size"):
+            solve(B)
+        with assert_raises(ValueError,
+                           match="object too deep for desired array"):
+            solve(BB)
+
+    @pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
+    def test_call_with_incorrectly_sized_matrix_with_umfpack(self):
+        use_solver(useUmfpack=True)
+        solve = factorized(self.A)
+        b = random.rand(4)
+        B = random.rand(4, 3)
+        BB = random.rand(self.n, 3, 9)
+
+        # does not raise
+        solve(b)
+        msg = "object too deep for desired array"
+        with assert_raises(ValueError, match=msg):
+            solve(B)
+        with assert_raises(ValueError, match=msg):
+            solve(BB)
+
+    def test_call_with_cast_to_complex_without_umfpack(self):
+        use_solver(useUmfpack=False)
+        solve = factorized(self.A)
+        b = random.rand(4)
+        for t in [np.complex64, np.complex128]:
+            with assert_raises(TypeError, match="Cannot cast array data"):
+                solve(b.astype(t))
+
+    @pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
+    def test_call_with_cast_to_complex_with_umfpack(self):
+        use_solver(useUmfpack=True)
+        solve = factorized(self.A)
+        b = random.rand(4)
+        for t in [np.complex64, np.complex128]:
+            assert_warns(ComplexWarning, solve, b.astype(t))
+
+    @pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
+    def test_assume_sorted_indices_flag(self):
+        # a sparse matrix with unsorted indices
+        unsorted_inds = np.array([2, 0, 1, 0])
+        data = np.array([10, 16, 5, 0.4])
+        indptr = np.array([0, 1, 2, 4])
+        A = csc_array((data, unsorted_inds, indptr), (3, 3))
+        b = ones(3)
+
+        # should raise when incorrectly assuming indices are sorted
+        use_solver(useUmfpack=True, assumeSortedIndices=True)
+        with assert_raises(RuntimeError,
+                           match="UMFPACK_ERROR_invalid_matrix"):
+            factorized(A)
+
+        # should sort indices and succeed when not assuming indices are sorted
+        use_solver(useUmfpack=True, assumeSortedIndices=False)
+        expected = splu(A.copy()).solve(b)
+
+        assert_equal(A.has_sorted_indices, 0)
+        assert_array_almost_equal(factorized(A)(b), expected)
+
+    @pytest.mark.slow
+    @pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
+    def test_bug_8278(self):
+        check_free_memory(8000)
+        use_solver(useUmfpack=True)
+        A, b = setup_bug_8278()
+        A = A.tocsc()
+        f = factorized(A)
+        x = f(b)
+        assert_array_almost_equal(A @ x, b)
+
+
+class TestLinsolve:
+    def setup_method(self):
+        use_solver(useUmfpack=False)
+
+    def test_singular(self):
+        A = csc_array((5,5), dtype='d')
+        b = array([1, 2, 3, 4, 5],dtype='d')
+        with suppress_warnings() as sup:
+            sup.filter(MatrixRankWarning, "Matrix is exactly singular")
+            x = spsolve(A, b)
+        assert_(not np.isfinite(x).any())
+
+    def test_singular_gh_3312(self):
+        # "Bad" test case that leads SuperLU to call LAPACK with invalid
+        # arguments. Check that it fails moderately gracefully.
+        ij = np.array([(17, 0), (17, 6), (17, 12), (10, 13)], dtype=np.int32)
+        v = np.array([0.284213, 0.94933781, 0.15767017, 0.38797296])
+        A = csc_array((v, ij.T), shape=(20, 20))
+        b = np.arange(20)
+
+        try:
+            # should either raise a runtime error or return value
+            # appropriate for singular input (which yields the warning)
+            with suppress_warnings() as sup:
+                sup.filter(MatrixRankWarning, "Matrix is exactly singular")
+                x = spsolve(A, b)
+            assert not np.isfinite(x).any()
+        except RuntimeError:
+            pass
+
+    @pytest.mark.parametrize('format', ['csc', 'csr'])
+    @pytest.mark.parametrize('idx_dtype', [np.int32, np.int64])
+    def test_twodiags(self, format: str, idx_dtype: np.dtype):
+        A = dia_array(([[1, 2, 3, 4, 5], [6, 5, 8, 9, 10]], [0, 1]),
+                        shape=(5, 5)).asformat(format)
+        b = array([1, 2, 3, 4, 5])
+
+        # condition number of A
+        cond_A = norm(A.toarray(), 2) * norm(inv(A.toarray()), 2)
+
+        for t in ['f','d','F','D']:
+            eps = finfo(t).eps  # floating point epsilon
+            b = b.astype(t)
+            Asp = A.astype(t)
+            Asp.indices = Asp.indices.astype(idx_dtype, copy=False)
+            Asp.indptr = Asp.indptr.astype(idx_dtype, copy=False)
+
+            x = spsolve(Asp, b)
+            assert_(norm(b - Asp@x) < 10 * cond_A * eps)
+
+    def test_bvector_smoketest(self):
+        Adense = array([[0., 1., 1.],
+                        [1., 0., 1.],
+                        [0., 0., 1.]])
+        As = csc_array(Adense)
+        random.seed(1234)
+        x = random.randn(3)
+        b = As@x
+        x2 = spsolve(As, b)
+
+        assert_array_almost_equal(x, x2)
+
+    def test_bmatrix_smoketest(self):
+        Adense = array([[0., 1., 1.],
+                        [1., 0., 1.],
+                        [0., 0., 1.]])
+        As = csc_array(Adense)
+        random.seed(1234)
+        x = random.randn(3, 4)
+        Bdense = As.dot(x)
+        Bs = csc_array(Bdense)
+        x2 = spsolve(As, Bs)
+        assert_array_almost_equal(x, x2.toarray())
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_non_square(self):
+        # A is not square.
+        A = ones((3, 4))
+        b = ones((4, 1))
+        assert_raises(ValueError, spsolve, A, b)
+        # A2 and b2 have incompatible shapes.
+        A2 = csc_array(eye(3))
+        b2 = array([1.0, 2.0])
+        assert_raises(ValueError, spsolve, A2, b2)
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_example_comparison(self):
+        row = array([0,0,1,2,2,2])
+        col = array([0,2,2,0,1,2])
+        data = array([1,2,3,-4,5,6])
+        sM = csr_array((data,(row,col)), shape=(3,3), dtype=float)
+        M = sM.toarray()
+
+        row = array([0,0,1,1,0,0])
+        col = array([0,2,1,1,0,0])
+        data = array([1,1,1,1,1,1])
+        sN = csr_array((data, (row,col)), shape=(3,3), dtype=float)
+        N = sN.toarray()
+
+        sX = spsolve(sM, sN)
+        X = scipy.linalg.solve(M, N)
+
+        assert_array_almost_equal(X, sX.toarray())
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    @pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
+    def test_shape_compatibility(self):
+        use_solver(useUmfpack=True)
+        A = csc_array([[1., 0], [0, 2]])
+        bs = [
+            [1, 6],
+            array([1, 6]),
+            [[1], [6]],
+            array([[1], [6]]),
+            csc_array([[1], [6]]),
+            csr_array([[1], [6]]),
+            dok_array([[1], [6]]),
+            bsr_array([[1], [6]]),
+            array([[1., 2., 3.], [6., 8., 10.]]),
+            csc_array([[1., 2., 3.], [6., 8., 10.]]),
+            csr_array([[1., 2., 3.], [6., 8., 10.]]),
+            dok_array([[1., 2., 3.], [6., 8., 10.]]),
+            bsr_array([[1., 2., 3.], [6., 8., 10.]]),
+            ]
+
+        for b in bs:
+            x = np.linalg.solve(A.toarray(), toarray(b))
+            for spmattype in [csc_array, csr_array, dok_array, lil_array]:
+                x1 = spsolve(spmattype(A), b, use_umfpack=True)
+                x2 = spsolve(spmattype(A), b, use_umfpack=False)
+
+                # check solution
+                if x.ndim == 2 and x.shape[1] == 1:
+                    # interprets also these as "vectors"
+                    x = x.ravel()
+
+                assert_array_almost_equal(toarray(x1), x,
+                                          err_msg=repr((b, spmattype, 1)))
+                assert_array_almost_equal(toarray(x2), x,
+                                          err_msg=repr((b, spmattype, 2)))
+
+                # dense vs. sparse output  ("vectors" are always dense)
+                if issparse(b) and x.ndim > 1:
+                    assert_(issparse(x1), repr((b, spmattype, 1)))
+                    assert_(issparse(x2), repr((b, spmattype, 2)))
+                else:
+                    assert_(isinstance(x1, np.ndarray), repr((b, spmattype, 1)))
+                    assert_(isinstance(x2, np.ndarray), repr((b, spmattype, 2)))
+
+                # check output shape
+                if x.ndim == 1:
+                    # "vector"
+                    assert_equal(x1.shape, (A.shape[1],))
+                    assert_equal(x2.shape, (A.shape[1],))
+                else:
+                    # "matrix"
+                    assert_equal(x1.shape, x.shape)
+                    assert_equal(x2.shape, x.shape)
+
+        A = csc_array((3, 3))
+        b = csc_array((1, 3))
+        assert_raises(ValueError, spsolve, A, b)
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_ndarray_support(self):
+        A = array([[1., 2.], [2., 0.]])
+        x = array([[1., 1.], [0.5, -0.5]])
+        b = array([[2., 0.], [2., 2.]])
+
+        assert_array_almost_equal(x, spsolve(A, b))
+
+    def test_gssv_badinput(self):
+        N = 10
+        d = arange(N) + 1.0
+        A = dia_array(((d, 2*d, d[::-1]), (-3, 0, 5)), shape=(N, N))
+
+        for container in (csc_array, csr_array):
+            A = container(A)
+            b = np.arange(N)
+
+            def not_c_contig(x):
+                return x.repeat(2)[::2]
+
+            def not_1dim(x):
+                return x[:,None]
+
+            def bad_type(x):
+                return x.astype(bool)
+
+            def too_short(x):
+                return x[:-1]
+
+            badops = [not_c_contig, not_1dim, bad_type, too_short]
+
+            for badop in badops:
+                msg = f"{container!r} {badop!r}"
+                # Not C-contiguous
+                assert_raises((ValueError, TypeError), _superlu.gssv,
+                              N, A.nnz, badop(A.data), A.indices, A.indptr,
+                              b, int(A.format == 'csc'), err_msg=msg)
+                assert_raises((ValueError, TypeError), _superlu.gssv,
+                              N, A.nnz, A.data, badop(A.indices), A.indptr,
+                              b, int(A.format == 'csc'), err_msg=msg)
+                assert_raises((ValueError, TypeError), _superlu.gssv,
+                              N, A.nnz, A.data, A.indices, badop(A.indptr),
+                              b, int(A.format == 'csc'), err_msg=msg)
+
+    def test_sparsity_preservation(self):
+        ident = csc_array([
+            [1, 0, 0],
+            [0, 1, 0],
+            [0, 0, 1]])
+        b = csc_array([
+            [0, 1],
+            [1, 0],
+            [0, 0]])
+        x = spsolve(ident, b)
+        assert_equal(ident.nnz, 3)
+        assert_equal(b.nnz, 2)
+        assert_equal(x.nnz, 2)
+        assert_allclose(x.toarray(), b.toarray(), atol=1e-12, rtol=1e-12)
+
+    def test_dtype_cast(self):
+        A_real = scipy.sparse.csr_array([[1, 2, 0],
+                                          [0, 0, 3],
+                                          [4, 0, 5]])
+        A_complex = scipy.sparse.csr_array([[1, 2, 0],
+                                             [0, 0, 3],
+                                             [4, 0, 5 + 1j]])
+        b_real = np.array([1,1,1])
+        b_complex = np.array([1,1,1]) + 1j*np.array([1,1,1])
+        x = spsolve(A_real, b_real)
+        assert_(np.issubdtype(x.dtype, np.floating))
+        x = spsolve(A_real, b_complex)
+        assert_(np.issubdtype(x.dtype, np.complexfloating))
+        x = spsolve(A_complex, b_real)
+        assert_(np.issubdtype(x.dtype, np.complexfloating))
+        x = spsolve(A_complex, b_complex)
+        assert_(np.issubdtype(x.dtype, np.complexfloating))
+
+    @pytest.mark.slow
+    @pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
+    def test_bug_8278(self):
+        check_free_memory(8000)
+        use_solver(useUmfpack=True)
+        A, b = setup_bug_8278()
+        x = spsolve(A, b)
+        assert_array_almost_equal(A @ x, b)
+
+
+class TestSplu:
+    def setup_method(self):
+        use_solver(useUmfpack=False)
+        n = 40
+        d = arange(n) + 1
+        self.n = n
+        self.A = dia_array(((d, 2*d, d[::-1]), (-3, 0, 5)), shape=(n, n)).tocsc()
+        random.seed(1234)
+
+    def _smoketest(self, spxlu, check, dtype, idx_dtype):
+        if np.issubdtype(dtype, np.complexfloating):
+            A = self.A + 1j*self.A.T
+        else:
+            A = self.A
+
+        A = A.astype(dtype)
+        A.indices = A.indices.astype(idx_dtype, copy=False)
+        A.indptr = A.indptr.astype(idx_dtype, copy=False)
+        lu = spxlu(A)
+
+        rng = random.RandomState(1234)
+
+        # Input shapes
+        for k in [None, 1, 2, self.n, self.n+2]:
+            msg = f"k={k!r}"
+
+            if k is None:
+                b = rng.rand(self.n)
+            else:
+                b = rng.rand(self.n, k)
+
+            if np.issubdtype(dtype, np.complexfloating):
+                b = b + 1j*rng.rand(*b.shape)
+            b = b.astype(dtype)
+
+            x = lu.solve(b)
+            check(A, b, x, msg)
+
+            x = lu.solve(b, 'T')
+            check(A.T, b, x, msg)
+
+            x = lu.solve(b, 'H')
+            check(A.T.conj(), b, x, msg)
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_splu_smoketest(self):
+        self._internal_test_splu_smoketest()
+
+    def _internal_test_splu_smoketest(self):
+        # Check that splu works at all
+        def check(A, b, x, msg=""):
+            eps = np.finfo(A.dtype).eps
+            r = A @ x
+            assert_(abs(r - b).max() < 1e3*eps, msg)
+
+        for dtype in [np.float32, np.float64, np.complex64, np.complex128]:
+            for idx_dtype in [np.int32, np.int64]:
+                self._smoketest(splu, check, dtype, idx_dtype)
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_spilu_smoketest(self):
+        self._internal_test_spilu_smoketest()
+
+    def _internal_test_spilu_smoketest(self):
+        errors = []
+
+        def check(A, b, x, msg=""):
+            r = A @ x
+            err = abs(r - b).max()
+            assert_(err < 1e-2, msg)
+            if b.dtype in (np.float64, np.complex128):
+                errors.append(err)
+
+        for dtype in [np.float32, np.float64, np.complex64, np.complex128]:
+            for idx_dtype in [np.int32, np.int64]:
+                self._smoketest(spilu, check, dtype, idx_dtype)
+
+        assert_(max(errors) > 1e-5)
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_spilu_drop_rule(self):
+        # Test passing in the drop_rule argument to spilu.
+        A = eye_array(2)
+
+        rules = [
+            b'basic,area'.decode('ascii'),  # unicode
+            b'basic,area',  # ascii
+            [b'basic', b'area'.decode('ascii')]
+        ]
+        for rule in rules:
+            # Argument should be accepted
+            assert_(isinstance(spilu(A, drop_rule=rule), SuperLU))
+
+    def test_splu_nnz0(self):
+        A = csc_array((5,5), dtype='d')
+        assert_raises(RuntimeError, splu, A)
+
+    def test_spilu_nnz0(self):
+        A = csc_array((5,5), dtype='d')
+        assert_raises(RuntimeError, spilu, A)
+
+    def test_splu_basic(self):
+        # Test basic splu functionality.
+        n = 30
+        rng = random.RandomState(12)
+        a = rng.rand(n, n)
+        a[a < 0.95] = 0
+        # First test with a singular matrix
+        a[:, 0] = 0
+        a_ = csc_array(a)
+        # Matrix is exactly singular
+        assert_raises(RuntimeError, splu, a_)
+
+        # Make a diagonal dominant, to make sure it is not singular
+        a += 4*eye(n)
+        a_ = csc_array(a)
+        lu = splu(a_)
+        b = ones(n)
+        x = lu.solve(b)
+        assert_almost_equal(dot(a, x), b)
+
+    def test_splu_perm(self):
+        # Test the permutation vectors exposed by splu.
+        n = 30
+        a = random.random((n, n))
+        a[a < 0.95] = 0
+        # Make a diagonal dominant, to make sure it is not singular
+        a += 4*eye(n)
+        a_ = csc_array(a)
+        lu = splu(a_)
+        # Check that the permutation indices do belong to [0, n-1].
+        for perm in (lu.perm_r, lu.perm_c):
+            assert_(all(perm > -1))
+            assert_(all(perm < n))
+            assert_equal(len(unique(perm)), len(perm))
+
+        # Now make a symmetric, and test that the two permutation vectors are
+        # the same
+        # Note: a += a.T relies on undefined behavior.
+        a = a + a.T
+        a_ = csc_array(a)
+        lu = splu(a_)
+        assert_array_equal(lu.perm_r, lu.perm_c)
+
+    @pytest.mark.parametrize("splu_fun, rtol", [(splu, 1e-7), (spilu, 1e-1)])
+    def test_natural_permc(self, splu_fun, rtol):
+        # Test that the "NATURAL" permc_spec does not permute the matrix
+        rng = np.random.RandomState(42)
+        n = 500
+        p = 0.01
+        A = scipy.sparse.random(n, n, p, random_state=rng)
+        x = rng.rand(n)
+        # Make A diagonal dominant to make sure it is not singular
+        A += (n+1)*scipy.sparse.eye_array(n)
+        A_ = csc_array(A)
+        b = A_ @ x
+
+        # without permc_spec, permutation is not identity
+        lu = splu_fun(A_)
+        assert_(np.any(lu.perm_c != np.arange(n)))
+
+        # with permc_spec="NATURAL", permutation is identity
+        lu = splu_fun(A_, permc_spec="NATURAL")
+        assert_array_equal(lu.perm_c, np.arange(n))
+
+        # Also, lu decomposition is valid
+        x2 = lu.solve(b)
+        assert_allclose(x, x2, rtol=rtol)
+
+    @pytest.mark.skipif(not hasattr(sys, 'getrefcount'), reason="no sys.getrefcount")
+    def test_lu_refcount(self):
+        # Test that we are keeping track of the reference count with splu.
+        n = 30
+        a = random.random((n, n))
+        a[a < 0.95] = 0
+        # Make a diagonal dominant, to make sure it is not singular
+        a += 4*eye(n)
+        a_ = csc_array(a)
+        lu = splu(a_)
+
+        # And now test that we don't have a refcount bug
+        rc = sys.getrefcount(lu)
+        for attr in ('perm_r', 'perm_c'):
+            perm = getattr(lu, attr)
+            assert_equal(sys.getrefcount(lu), rc + 1)
+            del perm
+            assert_equal(sys.getrefcount(lu), rc)
+
+    def test_bad_inputs(self):
+        A = self.A.tocsc()
+
+        assert_raises(ValueError, splu, A[:,:4])
+        assert_raises(ValueError, spilu, A[:,:4])
+
+        for lu in [splu(A), spilu(A)]:
+            b = random.rand(42)
+            B = random.rand(42, 3)
+            BB = random.rand(self.n, 3, 9)
+            assert_raises(ValueError, lu.solve, b)
+            assert_raises(ValueError, lu.solve, B)
+            assert_raises(ValueError, lu.solve, BB)
+            assert_raises(TypeError, lu.solve,
+                          b.astype(np.complex64))
+            assert_raises(TypeError, lu.solve,
+                          b.astype(np.complex128))
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_superlu_dlamch_i386_nan(self):
+        # SuperLU 4.3 calls some functions returning floats without
+        # declaring them. On i386@linux call convention, this fails to
+        # clear floating point registers after call. As a result, NaN
+        # can appear in the next floating point operation made.
+        #
+        # Here's a test case that triggered the issue.
+        n = 8
+        d = np.arange(n) + 1
+        A = dia_array(((d, 2*d, d[::-1]), (-3, 0, 5)), shape=(n, n))
+        A = A.astype(np.float32)
+        spilu(A)
+        A = A + 1j*A
+        B = A.toarray()
+        assert_(not np.isnan(B).any())
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_lu_attr(self):
+
+        def check(dtype, complex_2=False):
+            A = self.A.astype(dtype)
+
+            if complex_2:
+                A = A + 1j*A.T
+
+            n = A.shape[0]
+            lu = splu(A)
+
+            # Check that the decomposition is as advertised
+
+            Pc = np.zeros((n, n))
+            Pc[np.arange(n), lu.perm_c] = 1
+
+            Pr = np.zeros((n, n))
+            Pr[lu.perm_r, np.arange(n)] = 1
+
+            Ad = A.toarray()
+            lhs = Pr.dot(Ad).dot(Pc)
+            rhs = (lu.L @ lu.U).toarray()
+
+            eps = np.finfo(dtype).eps
+
+            assert_allclose(lhs, rhs, atol=100*eps)
+
+        check(np.float32)
+        check(np.float64)
+        check(np.complex64)
+        check(np.complex128)
+        check(np.complex64, True)
+        check(np.complex128, True)
+
+    @pytest.mark.thread_unsafe
+    @pytest.mark.slow
+    @sup_sparse_efficiency
+    def test_threads_parallel(self):
+        oks = []
+
+        def worker():
+            try:
+                self.test_splu_basic()
+                self._internal_test_splu_smoketest()
+                self._internal_test_spilu_smoketest()
+                oks.append(True)
+            except Exception:
+                pass
+
+        threads = [threading.Thread(target=worker)
+                   for k in range(20)]
+        for t in threads:
+            t.start()
+        for t in threads:
+            t.join()
+
+        assert_equal(len(oks), 20)
+
+    @pytest.mark.thread_unsafe
+    def test_singular_matrix(self):
+        # Test that SuperLU does not print to stdout when a singular matrix is
+        # passed. See gh-20993.
+        A = eye_array(10, format='csr')
+        A[-1, -1] = 0
+        b = np.zeros(10)
+        with pytest.warns(MatrixRankWarning):
+            res = spsolve(A, b)
+            assert np.isnan(res).all()
+
+
+class TestGstrsErrors:
+    def setup_method(self):
+      self.A = array([[1.0,2.0,3.0],[4.0,5.0,6.0],[7.0,8.0,9.0]], dtype=np.float64)
+      self.b = np.array([[1.0],[2.0],[3.0]], dtype=np.float64)
+
+    def test_trans(self):
+        L = scipy.sparse.tril(self.A, format='csc')
+        U = scipy.sparse.triu(self.A, k=1, format='csc')
+        with assert_raises(ValueError, match="trans must be N, T, or H"):
+            _superlu.gstrs('X', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
+                                U.shape[0], U.nnz, U.data, U.indices, U.indptr, self.b)
+
+    def test_shape_LU(self):
+        L = scipy.sparse.tril(self.A[0:2,0:2], format='csc')
+        U = scipy.sparse.triu(self.A, k=1, format='csc')
+        with assert_raises(ValueError, match="L and U must have the same dimension"):
+            _superlu.gstrs('N', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
+                                U.shape[0], U.nnz, U.data, U.indices, U.indptr, self.b)
+
+    def test_shape_b(self):
+        L = scipy.sparse.tril(self.A, format='csc')
+        U = scipy.sparse.triu(self.A, k=1, format='csc')
+        with assert_raises(ValueError, match="right hand side array has invalid shape"):
+            _superlu.gstrs('N', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
+                                U.shape[0], U.nnz, U.data, U.indices, U.indptr,
+                                self.b[0:2])
+
+    def test_types_differ(self):
+        L = scipy.sparse.tril(self.A.astype(np.float32), format='csc')
+        U = scipy.sparse.triu(self.A, k=1, format='csc')
+        with assert_raises(TypeError, match="nzvals types of L and U differ"):
+            _superlu.gstrs('N', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
+                                U.shape[0], U.nnz, U.data, U.indices, U.indptr, self.b)
+
+    def test_types_unsupported(self):
+        L = scipy.sparse.tril(self.A.astype(np.uint8), format='csc')
+        U = scipy.sparse.triu(self.A.astype(np.uint8), k=1, format='csc')
+        with assert_raises(TypeError, match="nzvals is not of a type supported"):
+            _superlu.gstrs('N', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
+                                U.shape[0], U.nnz, U.data, U.indices, U.indptr,
+                                self.b.astype(np.uint8))
+
+class TestSpsolveTriangular:
+    def setup_method(self):
+        use_solver(useUmfpack=False)
+
+    @pytest.mark.parametrize("fmt",["csr","csc"])
+    def test_zero_diagonal(self,fmt):
+        n = 5
+        rng = np.random.default_rng(43876432987)
+        A = rng.standard_normal((n, n))
+        b = np.arange(n)
+        A = scipy.sparse.tril(A, k=0, format=fmt)
+
+        x = spsolve_triangular(A, b, unit_diagonal=True, lower=True)
+
+        A.setdiag(1)
+        assert_allclose(A.dot(x), b)
+
+        # Regression test from gh-15199
+        A = np.array([[0, 0, 0], [1, 0, 0], [1, 1, 0]], dtype=np.float64)
+        b = np.array([1., 2., 3.])
+        with suppress_warnings() as sup:
+            sup.filter(SparseEfficiencyWarning, "CSC or CSR matrix format is")
+            spsolve_triangular(A, b, unit_diagonal=True)
+
+    @pytest.mark.parametrize("fmt",["csr","csc"])
+    def test_singular(self,fmt):
+        n = 5
+        if fmt == "csr":
+            A = csr_array((n, n))
+        else:
+            A = csc_array((n, n))
+        b = np.arange(n)
+        for lower in (True, False):
+            assert_raises(scipy.linalg.LinAlgError,
+                          spsolve_triangular, A, b, lower=lower)
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_bad_shape(self):
+        # A is not square.
+        A = np.zeros((3, 4))
+        b = ones((4, 1))
+        assert_raises(ValueError, spsolve_triangular, A, b)
+        # A2 and b2 have incompatible shapes.
+        A2 = csr_array(eye(3))
+        b2 = array([1.0, 2.0])
+        assert_raises(ValueError, spsolve_triangular, A2, b2)
+
+    @pytest.mark.thread_unsafe
+    @sup_sparse_efficiency
+    def test_input_types(self):
+        A = array([[1., 0.], [1., 2.]])
+        b = array([[2., 0.], [2., 2.]])
+        for matrix_type in (array, csc_array, csr_array):
+            x = spsolve_triangular(matrix_type(A), b, lower=True)
+            assert_array_almost_equal(A.dot(x), b)
+
+    @pytest.mark.thread_unsafe
+    @pytest.mark.slow
+    @sup_sparse_efficiency
+    @pytest.mark.parametrize("n", [10, 10**2, 10**3])
+    @pytest.mark.parametrize("m", [1, 10])
+    @pytest.mark.parametrize("lower", [True, False])
+    @pytest.mark.parametrize("format", ["csr", "csc"])
+    @pytest.mark.parametrize("unit_diagonal", [False, True])
+    @pytest.mark.parametrize("choice_of_A", ["real", "complex"])
+    @pytest.mark.parametrize("choice_of_b", ["floats", "ints", "complexints"])
+    def test_random(self, n, m, lower, format, unit_diagonal, choice_of_A, choice_of_b):
+        def random_triangle_matrix(n, lower=True, format="csr", choice_of_A="real"):
+            if choice_of_A == "real":
+                dtype = np.float64
+            elif choice_of_A == "complex":
+                dtype = np.complex128
+            else:
+                raise ValueError("choice_of_A must be 'real' or 'complex'.")
+            rng = np.random.default_rng(789002319)
+            rvs = rng.random
+            A = scipy.sparse.random(n, n, density=0.1, format='lil', dtype=dtype,
+                    random_state=rng, data_rvs=rvs)
+            if lower:
+                A = scipy.sparse.tril(A, format="lil")
+            else:
+                A = scipy.sparse.triu(A, format="lil")
+            for i in range(n):
+                A[i, i] = np.random.rand() + 1
+            if format == "csc":
+                A = A.tocsc(copy=False)
+            else:
+                A = A.tocsr(copy=False)
+            return A
+
+        np.random.seed(1234)
+        A = random_triangle_matrix(n, lower=lower)
+        if choice_of_b == "floats":
+            b = np.random.rand(n, m)
+        elif choice_of_b == "ints":
+            b = np.random.randint(-9, 9, (n, m))
+        elif choice_of_b == "complexints":
+            b = np.random.randint(-9, 9, (n, m)) + np.random.randint(-9, 9, (n, m)) * 1j
+        else:
+            raise ValueError(
+                "choice_of_b must be 'floats', 'ints', or 'complexints'.")
+        x = spsolve_triangular(A, b, lower=lower, unit_diagonal=unit_diagonal)
+        if unit_diagonal:
+            A.setdiag(1)
+        assert_allclose(A.dot(x), b, atol=1.5e-6)
+
+
+@pytest.mark.thread_unsafe
+@sup_sparse_efficiency
+@pytest.mark.parametrize("nnz", [10, 10**2, 10**3])
+@pytest.mark.parametrize("fmt", ["csr", "csc", "coo", "dia", "dok", "lil"])
+def test_is_sptriangular_and_spbandwidth(nnz, fmt):
+    rng = np.random.default_rng(42)
+
+    N = nnz // 2
+    dens = 0.1
+    A = scipy.sparse.random_array((N, N), density=dens, format="csr", rng=rng)
+    A[1, 3] = A[3, 1] = 22  # ensure not upper or lower
+    A = A.asformat(fmt)
+    AU = scipy.sparse.triu(A, format=fmt)
+    AL = scipy.sparse.tril(A, format=fmt)
+    D = 0.1 * scipy.sparse.eye_array(N, format=fmt)
+
+    assert is_sptriangular(A) == (False, False)
+    assert is_sptriangular(AL) == (True, False)
+    assert is_sptriangular(AU) == (False, True)
+    assert is_sptriangular(D) == (True, True)
+
+    assert spbandwidth(A) == scipy.linalg.bandwidth(A.toarray())
+    assert spbandwidth(AU) == scipy.linalg.bandwidth(AU.toarray())
+    assert spbandwidth(AL) == scipy.linalg.bandwidth(AL.toarray())
+    assert spbandwidth(D) == scipy.linalg.bandwidth(D.toarray())

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/__init__.py

@@ -0,0 +1,22 @@
+"""
+Sparse Eigenvalue Solvers
+-------------------------
+
+The submodules of sparse.linalg._eigen:
+    1. lobpcg: Locally Optimal Block Preconditioned Conjugate Gradient Method
+
+"""
+from .arpack import *
+from .lobpcg import *
+from ._svds import svds
+
+from . import arpack
+
+__all__ = [
+    'ArpackError', 'ArpackNoConvergence',
+    'eigs', 'eigsh', 'lobpcg', 'svds'
+]
+
+from scipy._lib._testutils import PytestTester
+test = PytestTester(__name__)
+del PytestTester

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/_svds.py

@@ -0,0 +1,540 @@
+import math
+import numpy as np
+
+from .arpack import _arpack  # type: ignore[attr-defined]
+from . import eigsh
+
+from scipy._lib._util import check_random_state, _transition_to_rng
+from scipy.sparse.linalg._interface import LinearOperator, aslinearoperator
+from scipy.sparse.linalg._eigen.lobpcg import lobpcg  # type: ignore[no-redef]
+from scipy.sparse.linalg._svdp import _svdp
+from scipy.linalg import svd
+
+arpack_int = _arpack.timing.nbx.dtype
+__all__ = ['svds']
+
+
+def _herm(x):
+    return x.T.conj()
+
+
+def _iv(A, k, ncv, tol, which, v0, maxiter,
+        return_singular, solver, rng):
+
+    # input validation/standardization for `solver`
+    # out of order because it's needed for other parameters
+    solver = str(solver).lower()
+    solvers = {"arpack", "lobpcg", "propack"}
+    if solver not in solvers:
+        raise ValueError(f"solver must be one of {solvers}.")
+
+    # input validation/standardization for `A`
+    A = aslinearoperator(A)  # this takes care of some input validation
+    if not np.issubdtype(A.dtype, np.number):
+        message = "`A` must be of numeric data type."
+        raise ValueError(message)
+    if math.prod(A.shape) == 0:
+        message = "`A` must not be empty."
+        raise ValueError(message)
+
+    # input validation/standardization for `k`
+    kmax = min(A.shape) if solver == 'propack' else min(A.shape) - 1
+    if int(k) != k or not (0 < k <= kmax):
+        message = "`k` must be an integer satisfying `0 < k < min(A.shape)`."
+        raise ValueError(message)
+    k = int(k)
+
+    # input validation/standardization for `ncv`
+    if solver == "arpack" and ncv is not None:
+        if int(ncv) != ncv or not (k < ncv < min(A.shape)):
+            message = ("`ncv` must be an integer satisfying "
+                       "`k < ncv < min(A.shape)`.")
+            raise ValueError(message)
+        ncv = int(ncv)
+
+    # input validation/standardization for `tol`
+    if tol < 0 or not np.isfinite(tol):
+        message = "`tol` must be a non-negative floating point value."
+        raise ValueError(message)
+    tol = float(tol)
+
+    # input validation/standardization for `which`
+    which = str(which).upper()
+    whichs = {'LM', 'SM'}
+    if which not in whichs:
+        raise ValueError(f"`which` must be in {whichs}.")
+
+    # input validation/standardization for `v0`
+    if v0 is not None:
+        v0 = np.atleast_1d(v0)
+        if not (np.issubdtype(v0.dtype, np.complexfloating)
+                or np.issubdtype(v0.dtype, np.floating)):
+            message = ("`v0` must be of floating or complex floating "
+                       "data type.")
+            raise ValueError(message)
+
+        shape = (A.shape[0],) if solver == 'propack' else (min(A.shape),)
+        if v0.shape != shape:
+            message = f"`v0` must have shape {shape}."
+            raise ValueError(message)
+
+    # input validation/standardization for `maxiter`
+    if maxiter is not None and (int(maxiter) != maxiter or maxiter <= 0):
+        message = "`maxiter` must be a positive integer."
+        raise ValueError(message)
+    maxiter = int(maxiter) if maxiter is not None else maxiter
+
+    # input validation/standardization for `return_singular_vectors`
+    # not going to be flexible with this; too complicated for little gain
+    rs_options = {True, False, "vh", "u"}
+    if return_singular not in rs_options:
+        raise ValueError(f"`return_singular_vectors` must be in {rs_options}.")
+
+    rng = check_random_state(rng)
+
+    return (A, k, ncv, tol, which, v0, maxiter,
+            return_singular, solver, rng)
+
+
+@_transition_to_rng("random_state", position_num=9)
+def svds(A, k=6, ncv=None, tol=0, which='LM', v0=None,
+         maxiter=None, return_singular_vectors=True,
+         solver='arpack', rng=None, options=None):
+    """
+    Partial singular value decomposition of a sparse matrix.
+
+    Compute the largest or smallest `k` singular values and corresponding
+    singular vectors of a sparse matrix `A`. The order in which the singular
+    values are returned is not guaranteed.
+
+    In the descriptions below, let ``M, N = A.shape``.
+
+    Parameters
+    ----------
+    A : ndarray, sparse matrix, or LinearOperator
+        Matrix to decompose of a floating point numeric dtype.
+    k : int, default: 6
+        Number of singular values and singular vectors to compute.
+        Must satisfy ``1 <= k <= kmax``, where ``kmax=min(M, N)`` for
+        ``solver='propack'`` and ``kmax=min(M, N) - 1`` otherwise.
+    ncv : int, optional
+        When ``solver='arpack'``, this is the number of Lanczos vectors
+        generated. See :ref:`'arpack' <sparse.linalg.svds-arpack>` for details.
+        When ``solver='lobpcg'`` or ``solver='propack'``, this parameter is
+        ignored.
+    tol : float, optional
+        Tolerance for singular values. Zero (default) means machine precision.
+    which : {'LM', 'SM'}
+        Which `k` singular values to find: either the largest magnitude ('LM')
+        or smallest magnitude ('SM') singular values.
+    v0 : ndarray, optional
+        The starting vector for iteration; see method-specific
+        documentation (:ref:`'arpack' <sparse.linalg.svds-arpack>`,
+        :ref:`'lobpcg' <sparse.linalg.svds-lobpcg>`), or
+        :ref:`'propack' <sparse.linalg.svds-propack>` for details.
+    maxiter : int, optional
+        Maximum number of iterations; see method-specific
+        documentation (:ref:`'arpack' <sparse.linalg.svds-arpack>`,
+        :ref:`'lobpcg' <sparse.linalg.svds-lobpcg>`), or
+        :ref:`'propack' <sparse.linalg.svds-propack>` for details.
+    return_singular_vectors : {True, False, "u", "vh"}
+        Singular values are always computed and returned; this parameter
+        controls the computation and return of singular vectors.
+
+        - ``True``: return singular vectors.
+        - ``False``: do not return singular vectors.
+        - ``"u"``: if ``M <= N``, compute only the left singular vectors and
+          return ``None`` for the right singular vectors. Otherwise, compute
+          all singular vectors.
+        - ``"vh"``: if ``M > N``, compute only the right singular vectors and
+          return ``None`` for the left singular vectors. Otherwise, compute
+          all singular vectors.
+
+        If ``solver='propack'``, the option is respected regardless of the
+        matrix shape.
+
+    solver :  {'arpack', 'propack', 'lobpcg'}, optional
+            The solver used.
+            :ref:`'arpack' <sparse.linalg.svds-arpack>`,
+            :ref:`'lobpcg' <sparse.linalg.svds-lobpcg>`, and
+            :ref:`'propack' <sparse.linalg.svds-propack>` are supported.
+            Default: `'arpack'`.
+    rng : `numpy.random.Generator`, optional
+        Pseudorandom number generator state. When `rng` is None, a new
+        `numpy.random.Generator` is created using entropy from the
+        operating system. Types other than `numpy.random.Generator` are
+        passed to `numpy.random.default_rng` to instantiate a ``Generator``.
+    options : dict, optional
+        A dictionary of solver-specific options. No solver-specific options
+        are currently supported; this parameter is reserved for future use.
+
+    Returns
+    -------
+    u : ndarray, shape=(M, k)
+        Unitary matrix having left singular vectors as columns.
+    s : ndarray, shape=(k,)
+        The singular values.
+    vh : ndarray, shape=(k, N)
+        Unitary matrix having right singular vectors as rows.
+
+    Notes
+    -----
+    This is a naive implementation using ARPACK or LOBPCG as an eigensolver
+    on the matrix ``A.conj().T @ A`` or ``A @ A.conj().T``, depending on
+    which one is smaller size, followed by the Rayleigh-Ritz method
+    as postprocessing; see
+    Using the normal matrix, in Rayleigh-Ritz method, (2022, Nov. 19),
+    Wikipedia, https://w.wiki/4zms.
+
+    Alternatively, the PROPACK solver can be called.
+
+    Choices of the input matrix `A` numeric dtype may be limited.
+    Only ``solver="lobpcg"`` supports all floating point dtypes
+    real: 'np.float32', 'np.float64', 'np.longdouble' and
+    complex: 'np.complex64', 'np.complex128', 'np.clongdouble'.
+    The ``solver="arpack"`` supports only
+    'np.float32', 'np.float64', and 'np.complex128'.
+
+    Examples
+    --------
+    Construct a matrix `A` from singular values and vectors.
+
+    >>> import numpy as np
+    >>> from scipy import sparse, linalg, stats
+    >>> from scipy.sparse.linalg import svds, aslinearoperator, LinearOperator
+
+    Construct a dense matrix `A` from singular values and vectors.
+
+    >>> rng = np.random.default_rng(258265244568965474821194062361901728911)
+    >>> orthogonal = stats.ortho_group.rvs(10, random_state=rng)
+    >>> s = [1e-3, 1, 2, 3, 4]  # non-zero singular values
+    >>> u = orthogonal[:, :5]         # left singular vectors
+    >>> vT = orthogonal[:, 5:].T      # right singular vectors
+    >>> A = u @ np.diag(s) @ vT
+
+    With only four singular values/vectors, the SVD approximates the original
+    matrix.
+
+    >>> u4, s4, vT4 = svds(A, k=4)
+    >>> A4 = u4 @ np.diag(s4) @ vT4
+    >>> np.allclose(A4, A, atol=1e-3)
+    True
+
+    With all five non-zero singular values/vectors, we can reproduce
+    the original matrix more accurately.
+
+    >>> u5, s5, vT5 = svds(A, k=5)
+    >>> A5 = u5 @ np.diag(s5) @ vT5
+    >>> np.allclose(A5, A)
+    True
+
+    The singular values match the expected singular values.
+
+    >>> np.allclose(s5, s)
+    True
+
+    Since the singular values are not close to each other in this example,
+    every singular vector matches as expected up to a difference in sign.
+
+    >>> (np.allclose(np.abs(u5), np.abs(u)) and
+    ...  np.allclose(np.abs(vT5), np.abs(vT)))
+    True
+
+    The singular vectors are also orthogonal.
+
+    >>> (np.allclose(u5.T @ u5, np.eye(5)) and
+    ...  np.allclose(vT5 @ vT5.T, np.eye(5)))
+    True
+
+    If there are (nearly) multiple singular values, the corresponding
+    individual singular vectors may be unstable, but the whole invariant
+    subspace containing all such singular vectors is computed accurately
+    as can be measured by angles between subspaces via 'subspace_angles'.
+
+    >>> rng = np.random.default_rng(178686584221410808734965903901790843963)
+    >>> s = [1, 1 + 1e-6]  # non-zero singular values
+    >>> u, _ = np.linalg.qr(rng.standard_normal((99, 2)))
+    >>> v, _ = np.linalg.qr(rng.standard_normal((99, 2)))
+    >>> vT = v.T
+    >>> A = u @ np.diag(s) @ vT
+    >>> A = A.astype(np.float32)
+    >>> u2, s2, vT2 = svds(A, k=2, rng=rng)
+    >>> np.allclose(s2, s)
+    True
+
+    The angles between the individual exact and computed singular vectors
+    may not be so small. To check use:
+
+    >>> (linalg.subspace_angles(u2[:, :1], u[:, :1]) +
+    ...  linalg.subspace_angles(u2[:, 1:], u[:, 1:]))
+    array([0.06562513])  # may vary
+    >>> (linalg.subspace_angles(vT2[:1, :].T, vT[:1, :].T) +
+    ...  linalg.subspace_angles(vT2[1:, :].T, vT[1:, :].T))
+    array([0.06562507])  # may vary
+
+    As opposed to the angles between the 2-dimensional invariant subspaces
+    that these vectors span, which are small for rights singular vectors
+
+    >>> linalg.subspace_angles(u2, u).sum() < 1e-6
+    True
+
+    as well as for left singular vectors.
+
+    >>> linalg.subspace_angles(vT2.T, vT.T).sum() < 1e-6
+    True
+
+    The next example follows that of 'sklearn.decomposition.TruncatedSVD'.
+
+    >>> rng = np.random.default_rng(0)
+    >>> X_dense = rng.random(size=(100, 100))
+    >>> X_dense[:, 2 * np.arange(50)] = 0
+    >>> X = sparse.csr_array(X_dense)
+    >>> _, singular_values, _ = svds(X, k=5, rng=rng)
+    >>> print(singular_values)
+    [ 4.3221...  4.4043...  4.4907...  4.5858... 35.4549...]
+
+    The function can be called without the transpose of the input matrix
+    ever explicitly constructed.
+
+    >>> rng = np.random.default_rng(102524723947864966825913730119128190974)
+    >>> G = sparse.random_array((8, 9), density=0.5, rng=rng)
+    >>> Glo = aslinearoperator(G)
+    >>> _, singular_values_svds, _ = svds(Glo, k=5, rng=rng)
+    >>> _, singular_values_svd, _ = linalg.svd(G.toarray())
+    >>> np.allclose(singular_values_svds, singular_values_svd[-4::-1])
+    True
+
+    The most memory efficient scenario is where neither
+    the original matrix, nor its transpose, is explicitly constructed.
+    Our example computes the smallest singular values and vectors
+    of 'LinearOperator' constructed from the numpy function 'np.diff' used
+    column-wise to be consistent with 'LinearOperator' operating on columns.
+
+    >>> diff0 = lambda a: np.diff(a, axis=0)
+
+    Let us create the matrix from 'diff0' to be used for validation only.
+
+    >>> n = 5  # The dimension of the space.
+    >>> M_from_diff0 = diff0(np.eye(n))
+    >>> print(M_from_diff0.astype(int))
+    [[-1  1  0  0  0]
+     [ 0 -1  1  0  0]
+     [ 0  0 -1  1  0]
+     [ 0  0  0 -1  1]]
+
+    The matrix 'M_from_diff0' is bi-diagonal and could be alternatively
+    created directly by
+
+    >>> M = - np.eye(n - 1, n, dtype=int)
+    >>> np.fill_diagonal(M[:,1:], 1)
+    >>> np.allclose(M, M_from_diff0)
+    True
+
+    Its transpose
+
+    >>> print(M.T)
+    [[-1  0  0  0]
+     [ 1 -1  0  0]
+     [ 0  1 -1  0]
+     [ 0  0  1 -1]
+     [ 0  0  0  1]]
+
+    can be viewed as the incidence matrix; see
+    Incidence matrix, (2022, Nov. 19), Wikipedia, https://w.wiki/5YXU,
+    of a linear graph with 5 vertices and 4 edges. The 5x5 normal matrix
+    ``M.T @ M`` thus is
+
+    >>> print(M.T @ M)
+    [[ 1 -1  0  0  0]
+     [-1  2 -1  0  0]
+     [ 0 -1  2 -1  0]
+     [ 0  0 -1  2 -1]
+     [ 0  0  0 -1  1]]
+
+    the graph Laplacian, while the actually used in 'svds' smaller size
+    4x4 normal matrix ``M @ M.T``
+
+    >>> print(M @ M.T)
+    [[ 2 -1  0  0]
+     [-1  2 -1  0]
+     [ 0 -1  2 -1]
+     [ 0  0 -1  2]]
+
+    is the so-called edge-based Laplacian; see
+    Symmetric Laplacian via the incidence matrix, in Laplacian matrix,
+    (2022, Nov. 19), Wikipedia, https://w.wiki/5YXW.
+
+    The 'LinearOperator' setup needs the options 'rmatvec' and 'rmatmat'
+    of multiplication by the matrix transpose ``M.T``, but we want to be
+    matrix-free to save memory, so knowing how ``M.T`` looks like, we
+    manually construct the following function to be
+    used in ``rmatmat=diff0t``.
+
+    >>> def diff0t(a):
+    ...     if a.ndim == 1:
+    ...         a = a[:,np.newaxis]  # Turn 1D into 2D array
+    ...     d = np.zeros((a.shape[0] + 1, a.shape[1]), dtype=a.dtype)
+    ...     d[0, :] = - a[0, :]
+    ...     d[1:-1, :] = a[0:-1, :] - a[1:, :]
+    ...     d[-1, :] = a[-1, :]
+    ...     return d
+
+    We check that our function 'diff0t' for the matrix transpose is valid.
+
+    >>> np.allclose(M.T, diff0t(np.eye(n-1)))
+    True
+
+    Now we setup our matrix-free 'LinearOperator' called 'diff0_func_aslo'
+    and for validation the matrix-based 'diff0_matrix_aslo'.
+
+    >>> def diff0_func_aslo_def(n):
+    ...     return LinearOperator(matvec=diff0,
+    ...                           matmat=diff0,
+    ...                           rmatvec=diff0t,
+    ...                           rmatmat=diff0t,
+    ...                           shape=(n - 1, n))
+    >>> diff0_func_aslo = diff0_func_aslo_def(n)
+    >>> diff0_matrix_aslo = aslinearoperator(M_from_diff0)
+
+    And validate both the matrix and its transpose in 'LinearOperator'.
+
+    >>> np.allclose(diff0_func_aslo(np.eye(n)),
+    ...             diff0_matrix_aslo(np.eye(n)))
+    True
+    >>> np.allclose(diff0_func_aslo.T(np.eye(n-1)),
+    ...             diff0_matrix_aslo.T(np.eye(n-1)))
+    True
+
+    Having the 'LinearOperator' setup validated, we run the solver.
+
+    >>> n = 100
+    >>> diff0_func_aslo = diff0_func_aslo_def(n)
+    >>> u, s, vT = svds(diff0_func_aslo, k=3, which='SM')
+
+    The singular values squared and the singular vectors are known
+    explicitly; see
+    Pure Dirichlet boundary conditions, in
+    Eigenvalues and eigenvectors of the second derivative,
+    (2022, Nov. 19), Wikipedia, https://w.wiki/5YX6,
+    since 'diff' corresponds to first
+    derivative, and its smaller size n-1 x n-1 normal matrix
+    ``M @ M.T`` represent the discrete second derivative with the Dirichlet
+    boundary conditions. We use these analytic expressions for validation.
+
+    >>> se = 2. * np.sin(np.pi * np.arange(1, 4) / (2. * n))
+    >>> ue = np.sqrt(2 / n) * np.sin(np.pi * np.outer(np.arange(1, n),
+    ...                              np.arange(1, 4)) / n)
+    >>> np.allclose(s, se, atol=1e-3)
+    True
+    >>> np.allclose(np.abs(u), np.abs(ue), atol=1e-6)
+    True
+
+    """
+    args = _iv(A, k, ncv, tol, which, v0, maxiter, return_singular_vectors,
+               solver, rng)
+    (A, k, ncv, tol, which, v0, maxiter,
+     return_singular_vectors, solver, rng) = args
+
+    largest = (which == 'LM')
+    n, m = A.shape
+
+    if n >= m:
+        X_dot = A.matvec
+        X_matmat = A.matmat
+        XH_dot = A.rmatvec
+        XH_mat = A.rmatmat
+        transpose = False
+    else:
+        X_dot = A.rmatvec
+        X_matmat = A.rmatmat
+        XH_dot = A.matvec
+        XH_mat = A.matmat
+        transpose = True
+
+        dtype = getattr(A, 'dtype', None)
+        if dtype is None:
+            dtype = A.dot(np.zeros([m, 1])).dtype
+
+    def matvec_XH_X(x):
+        return XH_dot(X_dot(x))
+
+    def matmat_XH_X(x):
+        return XH_mat(X_matmat(x))
+
+    XH_X = LinearOperator(matvec=matvec_XH_X, dtype=A.dtype,
+                          matmat=matmat_XH_X,
+                          shape=(min(A.shape), min(A.shape)))
+
+    # Get a low rank approximation of the implicitly defined gramian matrix.
+    # This is not a stable way to approach the problem.
+    if solver == 'lobpcg':
+
+        if k == 1 and v0 is not None:
+            X = np.reshape(v0, (-1, 1))
+        else:
+            X = rng.standard_normal(size=(min(A.shape), k))
+
+        _, eigvec = lobpcg(XH_X, X, tol=tol ** 2, maxiter=maxiter,
+                           largest=largest)
+
+    elif solver == 'propack':
+        jobu = return_singular_vectors in {True, 'u'}
+        jobv = return_singular_vectors in {True, 'vh'}
+        irl_mode = (which == 'SM')
+        res = _svdp(A, k=k, tol=tol**2, which=which, maxiter=None,
+                    compute_u=jobu, compute_v=jobv, irl_mode=irl_mode,
+                    kmax=maxiter, v0=v0, rng=rng)
+
+        u, s, vh, _ = res  # but we'll ignore bnd, the last output
+
+        # PROPACK order appears to be largest first. `svds` output order is not
+        # guaranteed, according to documentation, but for ARPACK and LOBPCG
+        # they actually are ordered smallest to largest, so reverse for
+        # consistency.
+        s = s[::-1]
+        u = u[:, ::-1]
+        vh = vh[::-1]
+
+        u = u if jobu else None
+        vh = vh if jobv else None
+
+        if return_singular_vectors:
+            return u, s, vh
+        else:
+            return s
+
+    elif solver == 'arpack' or solver is None:
+        if v0 is None:
+            v0 = rng.standard_normal(size=(min(A.shape),))
+        _, eigvec = eigsh(XH_X, k=k, tol=tol ** 2, maxiter=maxiter,
+                          ncv=ncv, which=which, v0=v0)
+        # arpack do not guarantee exactly orthonormal eigenvectors
+        # for clustered eigenvalues, especially in complex arithmetic
+        eigvec, _ = np.linalg.qr(eigvec)
+
+    # the eigenvectors eigvec must be orthonomal here; see gh-16712
+    Av = X_matmat(eigvec)
+    if not return_singular_vectors:
+        s = svd(Av, compute_uv=False, overwrite_a=True)
+        return s[::-1]
+
+    # compute the left singular vectors of X and update the right ones
+    # accordingly
+    u, s, vh = svd(Av, full_matrices=False, overwrite_a=True)
+    u = u[:, ::-1]
+    s = s[::-1]
+    vh = vh[::-1]
+
+    jobu = return_singular_vectors in {True, 'u'}
+    jobv = return_singular_vectors in {True, 'vh'}
+
+    if transpose:
+        u_tmp = eigvec @ _herm(vh) if jobu else None
+        vh = _herm(u) if jobv else None
+        u = u_tmp
+    else:
+        if not jobu:
+            u = None
+        vh = vh @ _herm(eigvec) if jobv else None
+
+    return u, s, vh

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/_svds_doc.py

@@ -0,0 +1,382 @@
+def _svds_arpack_doc(A, k=6, ncv=None, tol=0, which='LM', v0=None,
+                     maxiter=None, return_singular_vectors=True,
+                     solver='arpack', rng=None):
+    """
+    Partial singular value decomposition of a sparse matrix using ARPACK.
+
+    Compute the largest or smallest `k` singular values and corresponding
+    singular vectors of a sparse matrix `A`. The order in which the singular
+    values are returned is not guaranteed.
+
+    In the descriptions below, let ``M, N = A.shape``.
+
+    Parameters
+    ----------
+    A : sparse matrix or LinearOperator
+        Matrix to decompose.
+    k : int, optional
+        Number of singular values and singular vectors to compute.
+        Must satisfy ``1 <= k <= min(M, N) - 1``.
+        Default is 6.
+    ncv : int, optional
+        The number of Lanczos vectors generated.
+        The default is ``min(n, max(2*k + 1, 20))``.
+        If specified, must satisfy ``k + 1 < ncv < min(M, N)``; ``ncv > 2*k``
+        is recommended.
+    tol : float, optional
+        Tolerance for singular values. Zero (default) means machine precision.
+    which : {'LM', 'SM'}
+        Which `k` singular values to find: either the largest magnitude ('LM')
+        or smallest magnitude ('SM') singular values.
+    v0 : ndarray, optional
+        The starting vector for iteration:
+        an (approximate) left singular vector if ``N > M`` and a right singular
+        vector otherwise. Must be of length ``min(M, N)``.
+        Default: random
+    maxiter : int, optional
+        Maximum number of Arnoldi update iterations allowed;
+        default is ``min(M, N) * 10``.
+    return_singular_vectors : {True, False, "u", "vh"}
+        Singular values are always computed and returned; this parameter
+        controls the computation and return of singular vectors.
+
+        - ``True``: return singular vectors.
+        - ``False``: do not return singular vectors.
+        - ``"u"``: if ``M <= N``, compute only the left singular vectors and
+          return ``None`` for the right singular vectors. Otherwise, compute
+          all singular vectors.
+        - ``"vh"``: if ``M > N``, compute only the right singular vectors and
+          return ``None`` for the left singular vectors. Otherwise, compute
+          all singular vectors.
+
+    solver :  {'arpack', 'propack', 'lobpcg'}, optional
+            This is the solver-specific documentation for ``solver='arpack'``.
+            :ref:`'lobpcg' <sparse.linalg.svds-lobpcg>` and
+            :ref:`'propack' <sparse.linalg.svds-propack>`
+            are also supported.
+    rng : `numpy.random.Generator`, optional
+        Pseudorandom number generator state. When `rng` is None, a new
+        `numpy.random.Generator` is created using entropy from the
+        operating system. Types other than `numpy.random.Generator` are
+        passed to `numpy.random.default_rng` to instantiate a ``Generator``.
+    options : dict, optional
+        A dictionary of solver-specific options. No solver-specific options
+        are currently supported; this parameter is reserved for future use.
+
+    Returns
+    -------
+    u : ndarray, shape=(M, k)
+        Unitary matrix having left singular vectors as columns.
+    s : ndarray, shape=(k,)
+        The singular values.
+    vh : ndarray, shape=(k, N)
+        Unitary matrix having right singular vectors as rows.
+
+    Notes
+    -----
+    This is a naive implementation using ARPACK as an eigensolver
+    on ``A.conj().T @ A`` or ``A @ A.conj().T``, depending on which one is more
+    efficient.
+
+    Examples
+    --------
+    Construct a matrix ``A`` from singular values and vectors.
+
+    >>> import numpy as np
+    >>> from scipy.stats import ortho_group
+    >>> from scipy.sparse import csc_array, diags_array
+    >>> from scipy.sparse.linalg import svds
+    >>> rng = np.random.default_rng()
+    >>> orthogonal = csc_array(ortho_group.rvs(10, random_state=rng))
+    >>> s = [0.0001, 0.001, 3, 4, 5]  # singular values
+    >>> u = orthogonal[:, :5]         # left singular vectors
+    >>> vT = orthogonal[:, 5:].T      # right singular vectors
+    >>> A = u @ diags_array(s) @ vT
+
+    With only three singular values/vectors, the SVD approximates the original
+    matrix.
+
+    >>> u2, s2, vT2 = svds(A, k=3, solver='arpack')
+    >>> A2 = u2 @ np.diag(s2) @ vT2
+    >>> np.allclose(A2, A.toarray(), atol=1e-3)
+    True
+
+    With all five singular values/vectors, we can reproduce the original
+    matrix.
+
+    >>> u3, s3, vT3 = svds(A, k=5, solver='arpack')
+    >>> A3 = u3 @ np.diag(s3) @ vT3
+    >>> np.allclose(A3, A.toarray())
+    True
+
+    The singular values match the expected singular values, and the singular
+    vectors are as expected up to a difference in sign.
+
+    >>> (np.allclose(s3, s) and
+    ...  np.allclose(np.abs(u3), np.abs(u.toarray())) and
+    ...  np.allclose(np.abs(vT3), np.abs(vT.toarray())))
+    True
+
+    The singular vectors are also orthogonal.
+
+    >>> (np.allclose(u3.T @ u3, np.eye(5)) and
+    ...  np.allclose(vT3 @ vT3.T, np.eye(5)))
+    True
+    """
+    pass
+
+
+def _svds_lobpcg_doc(A, k=6, ncv=None, tol=0, which='LM', v0=None,
+                     maxiter=None, return_singular_vectors=True,
+                     solver='lobpcg', rng=None):
+    """
+    Partial singular value decomposition of a sparse matrix using LOBPCG.
+
+    Compute the largest or smallest `k` singular values and corresponding
+    singular vectors of a sparse matrix `A`. The order in which the singular
+    values are returned is not guaranteed.
+
+    In the descriptions below, let ``M, N = A.shape``.
+
+    Parameters
+    ----------
+    A : sparse matrix or LinearOperator
+        Matrix to decompose.
+    k : int, default: 6
+        Number of singular values and singular vectors to compute.
+        Must satisfy ``1 <= k <= min(M, N) - 1``.
+    ncv : int, optional
+        Ignored.
+    tol : float, optional
+        Tolerance for singular values. Zero (default) means machine precision.
+    which : {'LM', 'SM'}
+        Which `k` singular values to find: either the largest magnitude ('LM')
+        or smallest magnitude ('SM') singular values.
+    v0 : ndarray, optional
+        If `k` is 1, the starting vector for iteration:
+        an (approximate) left singular vector if ``N > M`` and a right singular
+        vector otherwise. Must be of length ``min(M, N)``.
+        Ignored otherwise.
+        Default: random
+    maxiter : int, default: 20
+        Maximum number of iterations.
+    return_singular_vectors : {True, False, "u", "vh"}
+        Singular values are always computed and returned; this parameter
+        controls the computation and return of singular vectors.
+
+        - ``True``: return singular vectors.
+        - ``False``: do not return singular vectors.
+        - ``"u"``: if ``M <= N``, compute only the left singular vectors and
+          return ``None`` for the right singular vectors. Otherwise, compute
+          all singular vectors.
+        - ``"vh"``: if ``M > N``, compute only the right singular vectors and
+          return ``None`` for the left singular vectors. Otherwise, compute
+          all singular vectors.
+
+    solver :  {'arpack', 'propack', 'lobpcg'}, optional
+            This is the solver-specific documentation for ``solver='lobpcg'``.
+            :ref:`'arpack' <sparse.linalg.svds-arpack>` and
+            :ref:`'propack' <sparse.linalg.svds-propack>`
+            are also supported.
+    rng : `numpy.random.Generator`, optional
+        Pseudorandom number generator state. When `rng` is None, a new
+        `numpy.random.Generator` is created using entropy from the
+        operating system. Types other than `numpy.random.Generator` are
+        passed to `numpy.random.default_rng` to instantiate a ``Generator``.
+    options : dict, optional
+        A dictionary of solver-specific options. No solver-specific options
+        are currently supported; this parameter is reserved for future use.
+
+    Returns
+    -------
+    u : ndarray, shape=(M, k)
+        Unitary matrix having left singular vectors as columns.
+    s : ndarray, shape=(k,)
+        The singular values.
+    vh : ndarray, shape=(k, N)
+        Unitary matrix having right singular vectors as rows.
+
+    Notes
+    -----
+    This is a naive implementation using LOBPCG as an eigensolver
+    on ``A.conj().T @ A`` or ``A @ A.conj().T``, depending on which one is more
+    efficient.
+
+    Examples
+    --------
+    Construct a matrix ``A`` from singular values and vectors.
+
+    >>> import numpy as np
+    >>> from scipy.stats import ortho_group
+    >>> from scipy.sparse import csc_array, diags_array
+    >>> from scipy.sparse.linalg import svds
+    >>> rng = np.random.default_rng()
+    >>> orthogonal = csc_array(ortho_group.rvs(10, random_state=rng))
+    >>> s = [0.0001, 0.001, 3, 4, 5]  # singular values
+    >>> u = orthogonal[:, :5]         # left singular vectors
+    >>> vT = orthogonal[:, 5:].T      # right singular vectors
+    >>> A = u @ diags_array(s) @ vT
+
+    With only three singular values/vectors, the SVD approximates the original
+    matrix.
+
+    >>> u2, s2, vT2 = svds(A, k=3, solver='lobpcg')
+    >>> A2 = u2 @ np.diag(s2) @ vT2
+    >>> np.allclose(A2, A.toarray(), atol=1e-3)
+    True
+
+    With all five singular values/vectors, we can reproduce the original
+    matrix.
+
+    >>> u3, s3, vT3 = svds(A, k=5, solver='lobpcg')
+    >>> A3 = u3 @ np.diag(s3) @ vT3
+    >>> np.allclose(A3, A.toarray())
+    True
+
+    The singular values match the expected singular values, and the singular
+    vectors are as expected up to a difference in sign.
+
+    >>> (np.allclose(s3, s) and
+    ...  np.allclose(np.abs(u3), np.abs(u.todense())) and
+    ...  np.allclose(np.abs(vT3), np.abs(vT.todense())))
+    True
+
+    The singular vectors are also orthogonal.
+
+    >>> (np.allclose(u3.T @ u3, np.eye(5)) and
+    ...  np.allclose(vT3 @ vT3.T, np.eye(5)))
+    True
+
+    """
+    pass
+
+
+def _svds_propack_doc(A, k=6, ncv=None, tol=0, which='LM', v0=None,
+                      maxiter=None, return_singular_vectors=True,
+                      solver='propack', rng=None):
+    """
+    Partial singular value decomposition of a sparse matrix using PROPACK.
+
+    Compute the largest or smallest `k` singular values and corresponding
+    singular vectors of a sparse matrix `A`. The order in which the singular
+    values are returned is not guaranteed.
+
+    In the descriptions below, let ``M, N = A.shape``.
+
+    Parameters
+    ----------
+    A : sparse matrix or LinearOperator
+        Matrix to decompose. If `A` is a ``LinearOperator``
+        object, it must define both ``matvec`` and ``rmatvec`` methods.
+    k : int, default: 6
+        Number of singular values and singular vectors to compute.
+        Must satisfy ``1 <= k <= min(M, N)``.
+    ncv : int, optional
+        Ignored.
+    tol : float, optional
+        The desired relative accuracy for computed singular values.
+        Zero (default) means machine precision.
+    which : {'LM', 'SM'}
+        Which `k` singular values to find: either the largest magnitude ('LM')
+        or smallest magnitude ('SM') singular values. Note that choosing
+        ``which='SM'`` will force the ``irl`` option to be set ``True``.
+    v0 : ndarray, optional
+        Starting vector for iterations: must be of length ``A.shape[0]``.
+        If not specified, PROPACK will generate a starting vector.
+    maxiter : int, optional
+        Maximum number of iterations / maximal dimension of the Krylov
+        subspace. Default is ``10 * k``.
+    return_singular_vectors : {True, False, "u", "vh"}
+        Singular values are always computed and returned; this parameter
+        controls the computation and return of singular vectors.
+
+        - ``True``: return singular vectors.
+        - ``False``: do not return singular vectors.
+        - ``"u"``: compute only the left singular vectors; return ``None`` for
+          the right singular vectors.
+        - ``"vh"``: compute only the right singular vectors; return ``None``
+          for the left singular vectors.
+
+    solver :  {'arpack', 'propack', 'lobpcg'}, optional
+            This is the solver-specific documentation for ``solver='propack'``.
+            :ref:`'arpack' <sparse.linalg.svds-arpack>` and
+            :ref:`'lobpcg' <sparse.linalg.svds-lobpcg>`
+            are also supported.
+    rng : `numpy.random.Generator`, optional
+        Pseudorandom number generator state. When `rng` is None, a new
+        `numpy.random.Generator` is created using entropy from the
+        operating system. Types other than `numpy.random.Generator` are
+        passed to `numpy.random.default_rng` to instantiate a ``Generator``.
+    options : dict, optional
+        A dictionary of solver-specific options. No solver-specific options
+        are currently supported; this parameter is reserved for future use.
+
+    Returns
+    -------
+    u : ndarray, shape=(M, k)
+        Unitary matrix having left singular vectors as columns.
+    s : ndarray, shape=(k,)
+        The singular values.
+    vh : ndarray, shape=(k, N)
+        Unitary matrix having right singular vectors as rows.
+
+    Notes
+    -----
+    This is an interface to the Fortran library PROPACK [1]_.
+    The current default is to run with IRL mode disabled unless seeking the
+    smallest singular values/vectors (``which='SM'``).
+
+    References
+    ----------
+
+    .. [1] Larsen, Rasmus Munk. "PROPACK-Software for large and sparse SVD
+       calculations." Available online. URL
+       http://sun.stanford.edu/~rmunk/PROPACK (2004): 2008-2009.
+
+    Examples
+    --------
+    Construct a matrix ``A`` from singular values and vectors.
+
+    >>> import numpy as np
+    >>> from scipy.stats import ortho_group
+    >>> from scipy.sparse import csc_array, diags_array
+    >>> from scipy.sparse.linalg import svds
+    >>> rng = np.random.default_rng()
+    >>> orthogonal = csc_array(ortho_group.rvs(10, random_state=rng))
+    >>> s = [0.0001, 0.001, 3, 4, 5]  # singular values
+    >>> u = orthogonal[:, :5]         # left singular vectors
+    >>> vT = orthogonal[:, 5:].T      # right singular vectors
+    >>> A = u @ diags_array(s) @ vT
+
+    With only three singular values/vectors, the SVD approximates the original
+    matrix.
+
+    >>> u2, s2, vT2 = svds(A, k=3, solver='propack')
+    >>> A2 = u2 @ np.diag(s2) @ vT2
+    >>> np.allclose(A2, A.todense(), atol=1e-3)
+    True
+
+    With all five singular values/vectors, we can reproduce the original
+    matrix.
+
+    >>> u3, s3, vT3 = svds(A, k=5, solver='propack')
+    >>> A3 = u3 @ np.diag(s3) @ vT3
+    >>> np.allclose(A3, A.todense())
+    True
+
+    The singular values match the expected singular values, and the singular
+    vectors are as expected up to a difference in sign.
+
+    >>> (np.allclose(s3, s) and
+    ...  np.allclose(np.abs(u3), np.abs(u.toarray())) and
+    ...  np.allclose(np.abs(vT3), np.abs(vT.toarray())))
+    True
+
+    The singular vectors are also orthogonal.
+
+    >>> (np.allclose(u3.T @ u3, np.eye(5)) and
+    ...  np.allclose(vT3 @ vT3.T, np.eye(5)))
+    True
+
+    """
+    pass

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/arpack/COPYING

@@ -0,0 +1,45 @@
+
+BSD Software License
+
+Pertains to ARPACK and P_ARPACK
+
+Copyright (c) 1996-2008 Rice University.
+Developed by D.C. Sorensen, R.B. Lehoucq, C. Yang, and K. Maschhoff.
+All rights reserved.
+
+Arpack has been renamed to arpack-ng.
+
+Copyright (c) 2001-2011 - Scilab Enterprises
+Updated by Allan Cornet, Sylvestre Ledru.
+
+Copyright (c) 2010 - Jordi Gutiérrez Hermoso (Octave patch)
+
+Copyright (c) 2007 - Sébastien Fabbro (gentoo patch)
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+- Redistributions of source code must retain the above copyright
+  notice, this list of conditions and the following disclaimer.
+
+- Redistributions in binary form must reproduce the above copyright
+  notice, this list of conditions and the following disclaimer listed
+  in this license in the documentation and/or other materials
+  provided with the distribution.
+
+- Neither the name of the copyright holders nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/arpack/__init__.py

@@ -0,0 +1,20 @@
+"""
+Eigenvalue solver using iterative methods.
+
+Find k eigenvectors and eigenvalues of a matrix A using the
+Arnoldi/Lanczos iterative methods from ARPACK [1]_,[2]_.
+
+These methods are most useful for large sparse matrices.
+
+  - eigs(A,k)
+  - eigsh(A,k)
+
+References
+----------
+.. [1] ARPACK Software, http://www.caam.rice.edu/software/ARPACK/
+.. [2] R. B. Lehoucq, D. C. Sorensen, and C. Yang,  ARPACK USERS GUIDE:
+   Solution of Large Scale Eigenvalue Problems by Implicitly Restarted
+   Arnoldi Methods. SIAM, Philadelphia, PA, 1998.
+
+"""
+from .arpack import *

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/arpack/arpack.py

@@ -0,0 +1,1700 @@
+"""
+Find a few eigenvectors and eigenvalues of a matrix.
+
+
+Uses ARPACK: https://github.com/opencollab/arpack-ng
+
+"""
+# Wrapper implementation notes
+#
+# ARPACK Entry Points
+# -------------------
+# The entry points to ARPACK are
+# - (s,d)seupd : single and double precision symmetric matrix
+# - (s,d,c,z)neupd: single,double,complex,double complex general matrix
+# This wrapper puts the *neupd (general matrix) interfaces in eigs()
+# and the *seupd (symmetric matrix) in eigsh().
+# There is no specialized interface for complex Hermitian matrices.
+# To find eigenvalues of a complex Hermitian matrix you
+# may use eigsh(), but eigsh() will simply call eigs()
+# and return the real part of the eigenvalues thus obtained.
+
+# Number of eigenvalues returned and complex eigenvalues
+# ------------------------------------------------------
+# The ARPACK nonsymmetric real and double interface (s,d)naupd return
+# eigenvalues and eigenvectors in real (float,double) arrays.
+# Since the eigenvalues and eigenvectors are, in general, complex
+# ARPACK puts the real and imaginary parts in consecutive entries
+# in real-valued arrays.   This wrapper puts the real entries
+# into complex data types and attempts to return the requested eigenvalues
+# and eigenvectors.
+
+
+# Solver modes
+# ------------
+# ARPACK and handle shifted and shift-inverse computations
+# for eigenvalues by providing a shift (sigma) and a solver.
+
+import numpy as np
+import warnings
+from scipy.sparse.linalg._interface import aslinearoperator, LinearOperator
+from scipy.sparse import eye, issparse
+from scipy.linalg import eig, eigh, lu_factor, lu_solve
+from scipy.sparse._sputils import (
+    convert_pydata_sparse_to_scipy, isdense, is_pydata_spmatrix,
+)
+from scipy.sparse.linalg import gmres, splu
+from scipy._lib._util import _aligned_zeros
+from scipy._lib._threadsafety import ReentrancyLock
+from . import _arpack
+arpack_int = _arpack.timing.nbx.dtype
+
+__docformat__ = "restructuredtext en"
+
+__all__ = ['eigs', 'eigsh', 'ArpackError', 'ArpackNoConvergence']
+
+
+_type_conv = {'f': 's', 'd': 'd', 'F': 'c', 'D': 'z'}
+_ndigits = {'f': 5, 'd': 12, 'F': 5, 'D': 12}
+
+DNAUPD_ERRORS = {
+    0: "Normal exit.",
+    1: "Maximum number of iterations taken. "
+       "All possible eigenvalues of OP has been found. IPARAM(5) "
+       "returns the number of wanted converged Ritz values.",
+    2: "No longer an informational error. Deprecated starting "
+       "with release 2 of ARPACK.",
+    3: "No shifts could be applied during a cycle of the "
+       "Implicitly restarted Arnoldi iteration. One possibility "
+       "is to increase the size of NCV relative to NEV. ",
+    -1: "N must be positive.",
+    -2: "NEV must be positive.",
+    -3: "NCV-NEV >= 2 and less than or equal to N.",
+    -4: "The maximum number of Arnoldi update iterations allowed "
+        "must be greater than zero.",
+    -5: " WHICH must be one of 'LM', 'SM', 'LR', 'SR', 'LI', 'SI'",
+    -6: "BMAT must be one of 'I' or 'G'.",
+    -7: "Length of private work array WORKL is not sufficient.",
+    -8: "Error return from LAPACK eigenvalue calculation;",
+    -9: "Starting vector is zero.",
+    -10: "IPARAM(7) must be 1,2,3,4.",
+    -11: "IPARAM(7) = 1 and BMAT = 'G' are incompatible.",
+    -12: "IPARAM(1) must be equal to 0 or 1.",
+    -13: "NEV and WHICH = 'BE' are incompatible.",
+    -9999: "Could not build an Arnoldi factorization. "
+           "IPARAM(5) returns the size of the current Arnoldi "
+           "factorization. The user is advised to check that "
+           "enough workspace and array storage has been allocated."
+}
+
+SNAUPD_ERRORS = DNAUPD_ERRORS
+
+ZNAUPD_ERRORS = DNAUPD_ERRORS.copy()
+ZNAUPD_ERRORS[-10] = "IPARAM(7) must be 1,2,3."
+
+CNAUPD_ERRORS = ZNAUPD_ERRORS
+
+DSAUPD_ERRORS = {
+    0: "Normal exit.",
+    1: "Maximum number of iterations taken. "
+       "All possible eigenvalues of OP has been found.",
+    2: "No longer an informational error. Deprecated starting with "
+       "release 2 of ARPACK.",
+    3: "No shifts could be applied during a cycle of the Implicitly "
+       "restarted Arnoldi iteration. One possibility is to increase "
+       "the size of NCV relative to NEV. ",
+    -1: "N must be positive.",
+    -2: "NEV must be positive.",
+    -3: "NCV must be greater than NEV and less than or equal to N.",
+    -4: "The maximum number of Arnoldi update iterations allowed "
+        "must be greater than zero.",
+    -5: "WHICH must be one of 'LM', 'SM', 'LA', 'SA' or 'BE'.",
+    -6: "BMAT must be one of 'I' or 'G'.",
+    -7: "Length of private work array WORKL is not sufficient.",
+    -8: "Error return from trid. eigenvalue calculation; "
+        "Informational error from LAPACK routine dsteqr .",
+    -9: "Starting vector is zero.",
+    -10: "IPARAM(7) must be 1,2,3,4,5.",
+    -11: "IPARAM(7) = 1 and BMAT = 'G' are incompatible.",
+    -12: "IPARAM(1) must be equal to 0 or 1.",
+    -13: "NEV and WHICH = 'BE' are incompatible. ",
+    -9999: "Could not build an Arnoldi factorization. "
+           "IPARAM(5) returns the size of the current Arnoldi "
+           "factorization. The user is advised to check that "
+           "enough workspace and array storage has been allocated.",
+}
+
+SSAUPD_ERRORS = DSAUPD_ERRORS
+
+DNEUPD_ERRORS = {
+    0: "Normal exit.",
+    1: "The Schur form computed by LAPACK routine dlahqr "
+       "could not be reordered by LAPACK routine dtrsen. "
+       "Re-enter subroutine dneupd  with IPARAM(5)NCV and "
+       "increase the size of the arrays DR and DI to have "
+       "dimension at least dimension NCV and allocate at least NCV "
+       "columns for Z. NOTE: Not necessary if Z and V share "
+       "the same space. Please notify the authors if this error"
+       "occurs.",
+    -1: "N must be positive.",
+    -2: "NEV must be positive.",
+    -3: "NCV-NEV >= 2 and less than or equal to N.",
+    -5: "WHICH must be one of 'LM', 'SM', 'LR', 'SR', 'LI', 'SI'",
+    -6: "BMAT must be one of 'I' or 'G'.",
+    -7: "Length of private work WORKL array is not sufficient.",
+    -8: "Error return from calculation of a real Schur form. "
+        "Informational error from LAPACK routine dlahqr .",
+    -9: "Error return from calculation of eigenvectors. "
+        "Informational error from LAPACK routine dtrevc.",
+    -10: "IPARAM(7) must be 1,2,3,4.",
+    -11: "IPARAM(7) = 1 and BMAT = 'G' are incompatible.",
+    -12: "HOWMNY = 'S' not yet implemented",
+    -13: "HOWMNY must be one of 'A' or 'P' if RVEC = .true.",
+    -14: "DNAUPD  did not find any eigenvalues to sufficient "
+         "accuracy.",
+    -15: "DNEUPD got a different count of the number of converged "
+         "Ritz values than DNAUPD got.  This indicates the user "
+         "probably made an error in passing data from DNAUPD to "
+         "DNEUPD or that the data was modified before entering "
+         "DNEUPD",
+}
+
+SNEUPD_ERRORS = DNEUPD_ERRORS.copy()
+SNEUPD_ERRORS[1] = ("The Schur form computed by LAPACK routine slahqr "
+                    "could not be reordered by LAPACK routine strsen . "
+                    "Re-enter subroutine dneupd  with IPARAM(5)=NCV and "
+                    "increase the size of the arrays DR and DI to have "
+                    "dimension at least dimension NCV and allocate at least "
+                    "NCV columns for Z. NOTE: Not necessary if Z and V share "
+                    "the same space. Please notify the authors if this error "
+                    "occurs.")
+SNEUPD_ERRORS[-14] = ("SNAUPD did not find any eigenvalues to sufficient "
+                      "accuracy.")
+SNEUPD_ERRORS[-15] = ("SNEUPD got a different count of the number of "
+                      "converged Ritz values than SNAUPD got.  This indicates "
+                      "the user probably made an error in passing data from "
+                      "SNAUPD to SNEUPD or that the data was modified before "
+                      "entering SNEUPD")
+
+ZNEUPD_ERRORS = {0: "Normal exit.",
+                 1: "The Schur form computed by LAPACK routine csheqr "
+                    "could not be reordered by LAPACK routine ztrsen. "
+                    "Re-enter subroutine zneupd with IPARAM(5)=NCV and "
+                    "increase the size of the array D to have "
+                    "dimension at least dimension NCV and allocate at least "
+                    "NCV columns for Z. NOTE: Not necessary if Z and V share "
+                    "the same space. Please notify the authors if this error "
+                    "occurs.",
+                 -1: "N must be positive.",
+                 -2: "NEV must be positive.",
+                 -3: "NCV-NEV >= 1 and less than or equal to N.",
+                 -5: "WHICH must be one of 'LM', 'SM', 'LR', 'SR', 'LI', 'SI'",
+                 -6: "BMAT must be one of 'I' or 'G'.",
+                 -7: "Length of private work WORKL array is not sufficient.",
+                 -8: "Error return from LAPACK eigenvalue calculation. "
+                     "This should never happened.",
+                 -9: "Error return from calculation of eigenvectors. "
+                     "Informational error from LAPACK routine ztrevc.",
+                 -10: "IPARAM(7) must be 1,2,3",
+                 -11: "IPARAM(7) = 1 and BMAT = 'G' are incompatible.",
+                 -12: "HOWMNY = 'S' not yet implemented",
+                 -13: "HOWMNY must be one of 'A' or 'P' if RVEC = .true.",
+                 -14: "ZNAUPD did not find any eigenvalues to sufficient "
+                      "accuracy.",
+                 -15: "ZNEUPD got a different count of the number of "
+                      "converged Ritz values than ZNAUPD got.  This "
+                      "indicates the user probably made an error in passing "
+                      "data from ZNAUPD to ZNEUPD or that the data was "
+                      "modified before entering ZNEUPD"
+                 }
+
+CNEUPD_ERRORS = ZNEUPD_ERRORS.copy()
+CNEUPD_ERRORS[-14] = ("CNAUPD did not find any eigenvalues to sufficient "
+                      "accuracy.")
+CNEUPD_ERRORS[-15] = ("CNEUPD got a different count of the number of "
+                      "converged Ritz values than CNAUPD got.  This indicates "
+                      "the user probably made an error in passing data from "
+                      "CNAUPD to CNEUPD or that the data was modified before "
+                      "entering CNEUPD")
+
+DSEUPD_ERRORS = {
+    0: "Normal exit.",
+    -1: "N must be positive.",
+    -2: "NEV must be positive.",
+    -3: "NCV must be greater than NEV and less than or equal to N.",
+    -5: "WHICH must be one of 'LM', 'SM', 'LA', 'SA' or 'BE'.",
+    -6: "BMAT must be one of 'I' or 'G'.",
+    -7: "Length of private work WORKL array is not sufficient.",
+    -8: ("Error return from trid. eigenvalue calculation; "
+         "Information error from LAPACK routine dsteqr."),
+    -9: "Starting vector is zero.",
+    -10: "IPARAM(7) must be 1,2,3,4,5.",
+    -11: "IPARAM(7) = 1 and BMAT = 'G' are incompatible.",
+    -12: "NEV and WHICH = 'BE' are incompatible.",
+    -14: "DSAUPD  did not find any eigenvalues to sufficient accuracy.",
+    -15: "HOWMNY must be one of 'A' or 'S' if RVEC = .true.",
+    -16: "HOWMNY = 'S' not yet implemented",
+    -17: ("DSEUPD  got a different count of the number of converged "
+          "Ritz values than DSAUPD  got.  This indicates the user "
+          "probably made an error in passing data from DSAUPD  to "
+          "DSEUPD  or that the data was modified before entering  "
+          "DSEUPD.")
+}
+
+SSEUPD_ERRORS = DSEUPD_ERRORS.copy()
+SSEUPD_ERRORS[-14] = ("SSAUPD  did not find any eigenvalues "
+                      "to sufficient accuracy.")
+SSEUPD_ERRORS[-17] = ("SSEUPD  got a different count of the number of "
+                      "converged "
+                      "Ritz values than SSAUPD  got.  This indicates the user "
+                      "probably made an error in passing data from SSAUPD  to "
+                      "SSEUPD  or that the data was modified before entering  "
+                      "SSEUPD.")
+
+_SAUPD_ERRORS = {'d': DSAUPD_ERRORS,
+                 's': SSAUPD_ERRORS}
+_NAUPD_ERRORS = {'d': DNAUPD_ERRORS,
+                 's': SNAUPD_ERRORS,
+                 'z': ZNAUPD_ERRORS,
+                 'c': CNAUPD_ERRORS}
+_SEUPD_ERRORS = {'d': DSEUPD_ERRORS,
+                 's': SSEUPD_ERRORS}
+_NEUPD_ERRORS = {'d': DNEUPD_ERRORS,
+                 's': SNEUPD_ERRORS,
+                 'z': ZNEUPD_ERRORS,
+                 'c': CNEUPD_ERRORS}
+
+# accepted values of parameter WHICH in _SEUPD
+_SEUPD_WHICH = ['LM', 'SM', 'LA', 'SA', 'BE']
+
+# accepted values of parameter WHICH in _NAUPD
+_NEUPD_WHICH = ['LM', 'SM', 'LR', 'SR', 'LI', 'SI']
+
+
+class ArpackError(RuntimeError):
+    """
+    ARPACK error
+    """
+
+    def __init__(self, info, infodict=None):
+        if infodict is None:
+            infodict = _NAUPD_ERRORS
+
+        msg = infodict.get(info, "Unknown error")
+        super().__init__(f"ARPACK error {info}: {msg}")
+
+
+class ArpackNoConvergence(ArpackError):
+    """
+    ARPACK iteration did not converge
+
+    Attributes
+    ----------
+    eigenvalues : ndarray
+        Partial result. Converged eigenvalues.
+    eigenvectors : ndarray
+        Partial result. Converged eigenvectors.
+
+    """
+
+    def __init__(self, msg, eigenvalues, eigenvectors):
+        ArpackError.__init__(self, -1, {-1: msg})
+        self.eigenvalues = eigenvalues
+        self.eigenvectors = eigenvectors
+
+
+def choose_ncv(k):
+    """
+    Choose number of lanczos vectors based on target number
+    of singular/eigen values and vectors to compute, k.
+    """
+    return max(2 * k + 1, 20)
+
+
+class _ArpackParams:
+    def __init__(self, n, k, tp, mode=1, sigma=None,
+                 ncv=None, v0=None, maxiter=None, which="LM", tol=0):
+        if k <= 0:
+            raise ValueError("k must be positive, k=%d" % k)
+
+        if maxiter is None:
+            maxiter = n * 10
+        if maxiter <= 0:
+            raise ValueError("maxiter must be positive, maxiter=%d" % maxiter)
+
+        if tp not in 'fdFD':
+            # Use `float64` libraries from integer dtypes.
+            if np.can_cast(tp, 'd'):
+                tp = 'd'
+            else:
+                raise ValueError("matrix type must be 'f', 'd', 'F', or 'D'")
+
+        if v0 is not None:
+            # ARPACK overwrites its initial resid,  make a copy
+            self.resid = np.array(v0, copy=True)
+            info = 1
+        else:
+            # ARPACK will use a random initial vector.
+            self.resid = np.zeros(n, tp)
+            info = 0
+
+        if sigma is None:
+            #sigma not used
+            self.sigma = 0
+        else:
+            self.sigma = sigma
+
+        if ncv is None:
+            ncv = choose_ncv(k)
+        ncv = min(ncv, n)
+
+        self.v = np.zeros((n, ncv), tp)  # holds Ritz vectors
+        self.iparam = np.zeros(11, arpack_int)
+
+        # set solver mode and parameters
+        ishfts = 1
+        self.mode = mode
+        self.iparam[0] = ishfts
+        self.iparam[2] = maxiter
+        self.iparam[3] = 1
+        self.iparam[6] = mode
+
+        self.n = n
+        self.tol = tol
+        self.k = k
+        self.maxiter = maxiter
+        self.ncv = ncv
+        self.which = which
+        self.tp = tp
+        self.info = info
+
+        self.converged = False
+        self.ido = 0
+
+    def _raise_no_convergence(self):
+        msg = "No convergence (%d iterations, %d/%d eigenvectors converged)"
+        k_ok = self.iparam[4]
+        num_iter = self.iparam[2]
+        try:
+            ev, vec = self.extract(True)
+        except ArpackError as err:
+            msg = f"{msg} [{err}]"
+            ev = np.zeros((0,))
+            vec = np.zeros((self.n, 0))
+            k_ok = 0
+        raise ArpackNoConvergence(msg % (num_iter, k_ok, self.k), ev, vec)
+
+
+class _SymmetricArpackParams(_ArpackParams):
+    def __init__(self, n, k, tp, matvec, mode=1, M_matvec=None,
+                 Minv_matvec=None, sigma=None,
+                 ncv=None, v0=None, maxiter=None, which="LM", tol=0):
+        # The following modes are supported:
+        #  mode = 1:
+        #    Solve the standard eigenvalue problem:
+        #      A*x = lambda*x :
+        #       A - symmetric
+        #    Arguments should be
+        #       matvec      = left multiplication by A
+        #       M_matvec    = None [not used]
+        #       Minv_matvec = None [not used]
+        #
+        #  mode = 2:
+        #    Solve the general eigenvalue problem:
+        #      A*x = lambda*M*x
+        #       A - symmetric
+        #       M - symmetric positive definite
+        #    Arguments should be
+        #       matvec      = left multiplication by A
+        #       M_matvec    = left multiplication by M
+        #       Minv_matvec = left multiplication by M^-1
+        #
+        #  mode = 3:
+        #    Solve the general eigenvalue problem in shift-invert mode:
+        #      A*x = lambda*M*x
+        #       A - symmetric
+        #       M - symmetric positive semi-definite
+        #    Arguments should be
+        #       matvec      = None [not used]
+        #       M_matvec    = left multiplication by M
+        #                     or None, if M is the identity
+        #       Minv_matvec = left multiplication by [A-sigma*M]^-1
+        #
+        #  mode = 4:
+        #    Solve the general eigenvalue problem in Buckling mode:
+        #      A*x = lambda*AG*x
+        #       A  - symmetric positive semi-definite
+        #       AG - symmetric indefinite
+        #    Arguments should be
+        #       matvec      = left multiplication by A
+        #       M_matvec    = None [not used]
+        #       Minv_matvec = left multiplication by [A-sigma*AG]^-1
+        #
+        #  mode = 5:
+        #    Solve the general eigenvalue problem in Cayley-transformed mode:
+        #      A*x = lambda*M*x
+        #       A - symmetric
+        #       M - symmetric positive semi-definite
+        #    Arguments should be
+        #       matvec      = left multiplication by A
+        #       M_matvec    = left multiplication by M
+        #                     or None, if M is the identity
+        #       Minv_matvec = left multiplication by [A-sigma*M]^-1
+        if mode == 1:
+            if matvec is None:
+                raise ValueError("matvec must be specified for mode=1")
+            if M_matvec is not None:
+                raise ValueError("M_matvec cannot be specified for mode=1")
+            if Minv_matvec is not None:
+                raise ValueError("Minv_matvec cannot be specified for mode=1")
+
+            self.OP = matvec
+            self.B = lambda x: x
+            self.bmat = 'I'
+        elif mode == 2:
+            if matvec is None:
+                raise ValueError("matvec must be specified for mode=2")
+            if M_matvec is None:
+                raise ValueError("M_matvec must be specified for mode=2")
+            if Minv_matvec is None:
+                raise ValueError("Minv_matvec must be specified for mode=2")
+
+            self.OP = lambda x: Minv_matvec(matvec(x))
+            self.OPa = Minv_matvec
+            self.OPb = matvec
+            self.B = M_matvec
+            self.bmat = 'G'
+        elif mode == 3:
+            if matvec is not None:
+                raise ValueError("matvec must not be specified for mode=3")
+            if Minv_matvec is None:
+                raise ValueError("Minv_matvec must be specified for mode=3")
+
+            if M_matvec is None:
+                self.OP = Minv_matvec
+                self.OPa = Minv_matvec
+                self.B = lambda x: x
+                self.bmat = 'I'
+            else:
+                self.OP = lambda x: Minv_matvec(M_matvec(x))
+                self.OPa = Minv_matvec
+                self.B = M_matvec
+                self.bmat = 'G'
+        elif mode == 4:
+            if matvec is None:
+                raise ValueError("matvec must be specified for mode=4")
+            if M_matvec is not None:
+                raise ValueError("M_matvec must not be specified for mode=4")
+            if Minv_matvec is None:
+                raise ValueError("Minv_matvec must be specified for mode=4")
+            self.OPa = Minv_matvec
+            self.OP = lambda x: self.OPa(matvec(x))
+            self.B = matvec
+            self.bmat = 'G'
+        elif mode == 5:
+            if matvec is None:
+                raise ValueError("matvec must be specified for mode=5")
+            if Minv_matvec is None:
+                raise ValueError("Minv_matvec must be specified for mode=5")
+
+            self.OPa = Minv_matvec
+            self.A_matvec = matvec
+
+            if M_matvec is None:
+                self.OP = lambda x: Minv_matvec(matvec(x) + sigma * x)
+                self.B = lambda x: x
+                self.bmat = 'I'
+            else:
+                self.OP = lambda x: Minv_matvec(matvec(x)
+                                                + sigma * M_matvec(x))
+                self.B = M_matvec
+                self.bmat = 'G'
+        else:
+            raise ValueError("mode=%i not implemented" % mode)
+
+        if which not in _SEUPD_WHICH:
+            raise ValueError(f"which must be one of {' '.join(_SEUPD_WHICH)}")
+        if k >= n:
+            raise ValueError("k must be less than ndim(A), k=%d" % k)
+
+        _ArpackParams.__init__(self, n, k, tp, mode, sigma,
+                               ncv, v0, maxiter, which, tol)
+
+        if self.ncv > n or self.ncv <= k:
+            raise ValueError(f"ncv must be k<ncv<=n, ncv={self.ncv}")
+
+        # Use _aligned_zeros to work around a f2py bug in Numpy 1.9.1
+        self.workd = _aligned_zeros(3 * n, self.tp)
+        self.workl = _aligned_zeros(self.ncv * (self.ncv + 8), self.tp)
+
+        ltr = _type_conv[self.tp]
+        if ltr not in ["s", "d"]:
+            raise ValueError("Input matrix is not real-valued.")
+
+        self._arpack_solver = _arpack.__dict__[ltr + 'saupd']
+        self._arpack_extract = _arpack.__dict__[ltr + 'seupd']
+
+        self.iterate_infodict = _SAUPD_ERRORS[ltr]
+        self.extract_infodict = _SEUPD_ERRORS[ltr]
+
+        self.ipntr = np.zeros(11, arpack_int)
+
+    def iterate(self):
+        self.ido, self.tol, self.resid, self.v, self.iparam, self.ipntr, self.info = \
+            self._arpack_solver(self.ido, self.bmat, self.which, self.k,
+                                self.tol, self.resid, self.v, self.iparam,
+                                self.ipntr, self.workd, self.workl, self.info)
+
+        xslice = slice(self.ipntr[0] - 1, self.ipntr[0] - 1 + self.n)
+        yslice = slice(self.ipntr[1] - 1, self.ipntr[1] - 1 + self.n)
+        if self.ido == -1:
+            # initialization
+            self.workd[yslice] = self.OP(self.workd[xslice])
+        elif self.ido == 1:
+            # compute y = Op*x
+            if self.mode == 1:
+                self.workd[yslice] = self.OP(self.workd[xslice])
+            elif self.mode == 2:
+                self.workd[xslice] = self.OPb(self.workd[xslice])
+                self.workd[yslice] = self.OPa(self.workd[xslice])
+            elif self.mode == 5:
+                Bxslice = slice(self.ipntr[2] - 1, self.ipntr[2] - 1 + self.n)
+                Ax = self.A_matvec(self.workd[xslice])
+                self.workd[yslice] = self.OPa(Ax + (self.sigma *
+                                                    self.workd[Bxslice]))
+            else:
+                Bxslice = slice(self.ipntr[2] - 1, self.ipntr[2] - 1 + self.n)
+                self.workd[yslice] = self.OPa(self.workd[Bxslice])
+        elif self.ido == 2:
+            self.workd[yslice] = self.B(self.workd[xslice])
+        elif self.ido == 3:
+            raise ValueError("ARPACK requested user shifts.  Assure ISHIFT==0")
+        else:
+            self.converged = True
+
+            if self.info == 0:
+                pass
+            elif self.info == 1:
+                self._raise_no_convergence()
+            else:
+                raise ArpackError(self.info, infodict=self.iterate_infodict)
+
+    def extract(self, return_eigenvectors):
+        rvec = return_eigenvectors
+        ierr = 0
+        howmny = 'A'  # return all eigenvectors
+        sselect = np.zeros(self.ncv, 'int')  # unused
+        d, z, ierr = self._arpack_extract(rvec, howmny, sselect, self.sigma,
+                                          self.bmat, self.which, self.k,
+                                          self.tol, self.resid, self.v,
+                                          self.iparam[0:7], self.ipntr,
+                                          self.workd[0:2 * self.n],
+                                          self.workl, ierr)
+        if ierr != 0:
+            raise ArpackError(ierr, infodict=self.extract_infodict)
+        k_ok = self.iparam[4]
+        d = d[:k_ok]
+        z = z[:, :k_ok]
+
+        if return_eigenvectors:
+            return d, z
+        else:
+            return d
+
+
+class _UnsymmetricArpackParams(_ArpackParams):
+    def __init__(self, n, k, tp, matvec, mode=1, M_matvec=None,
+                 Minv_matvec=None, sigma=None,
+                 ncv=None, v0=None, maxiter=None, which="LM", tol=0):
+        # The following modes are supported:
+        #  mode = 1:
+        #    Solve the standard eigenvalue problem:
+        #      A*x = lambda*x
+        #       A - square matrix
+        #    Arguments should be
+        #       matvec      = left multiplication by A
+        #       M_matvec    = None [not used]
+        #       Minv_matvec = None [not used]
+        #
+        #  mode = 2:
+        #    Solve the generalized eigenvalue problem:
+        #      A*x = lambda*M*x
+        #       A - square matrix
+        #       M - symmetric, positive semi-definite
+        #    Arguments should be
+        #       matvec      = left multiplication by A
+        #       M_matvec    = left multiplication by M
+        #       Minv_matvec = left multiplication by M^-1
+        #
+        #  mode = 3,4:
+        #    Solve the general eigenvalue problem in shift-invert mode:
+        #      A*x = lambda*M*x
+        #       A - square matrix
+        #       M - symmetric, positive semi-definite
+        #    Arguments should be
+        #       matvec      = None [not used]
+        #       M_matvec    = left multiplication by M
+        #                     or None, if M is the identity
+        #       Minv_matvec = left multiplication by [A-sigma*M]^-1
+        #    if A is real and mode==3, use the real part of Minv_matvec
+        #    if A is real and mode==4, use the imag part of Minv_matvec
+        #    if A is complex and mode==3,
+        #       use real and imag parts of Minv_matvec
+        if mode == 1:
+            if matvec is None:
+                raise ValueError("matvec must be specified for mode=1")
+            if M_matvec is not None:
+                raise ValueError("M_matvec cannot be specified for mode=1")
+            if Minv_matvec is not None:
+                raise ValueError("Minv_matvec cannot be specified for mode=1")
+
+            self.OP = matvec
+            self.B = lambda x: x
+            self.bmat = 'I'
+        elif mode == 2:
+            if matvec is None:
+                raise ValueError("matvec must be specified for mode=2")
+            if M_matvec is None:
+                raise ValueError("M_matvec must be specified for mode=2")
+            if Minv_matvec is None:
+                raise ValueError("Minv_matvec must be specified for mode=2")
+
+            self.OP = lambda x: Minv_matvec(matvec(x))
+            self.OPa = Minv_matvec
+            self.OPb = matvec
+            self.B = M_matvec
+            self.bmat = 'G'
+        elif mode in (3, 4):
+            if matvec is None:
+                raise ValueError("matvec must be specified "
+                                 "for mode in (3,4)")
+            if Minv_matvec is None:
+                raise ValueError("Minv_matvec must be specified "
+                                 "for mode in (3,4)")
+
+            self.matvec = matvec
+            if tp in 'DF':  # complex type
+                if mode == 3:
+                    self.OPa = Minv_matvec
+                else:
+                    raise ValueError("mode=4 invalid for complex A")
+            else:  # real type
+                if mode == 3:
+                    self.OPa = lambda x: np.real(Minv_matvec(x))
+                else:
+                    self.OPa = lambda x: np.imag(Minv_matvec(x))
+            if M_matvec is None:
+                self.B = lambda x: x
+                self.bmat = 'I'
+                self.OP = self.OPa
+            else:
+                self.B = M_matvec
+                self.bmat = 'G'
+                self.OP = lambda x: self.OPa(M_matvec(x))
+        else:
+            raise ValueError("mode=%i not implemented" % mode)
+
+        if which not in _NEUPD_WHICH:
+            raise ValueError(f"Parameter which must be one of {' '.join(_NEUPD_WHICH)}")
+        if k >= n - 1:
+            raise ValueError("k must be less than ndim(A)-1, k=%d" % k)
+
+        _ArpackParams.__init__(self, n, k, tp, mode, sigma,
+                               ncv, v0, maxiter, which, tol)
+
+        if self.ncv > n or self.ncv <= k + 1:
+            raise ValueError(f"ncv must be k+1<ncv<=n, ncv={self.ncv}")
+
+        # Use _aligned_zeros to work around a f2py bug in Numpy 1.9.1
+        self.workd = _aligned_zeros(3 * n, self.tp)
+        self.workl = _aligned_zeros(3 * self.ncv * (self.ncv + 2), self.tp)
+
+        ltr = _type_conv[self.tp]
+        self._arpack_solver = _arpack.__dict__[ltr + 'naupd']
+        self._arpack_extract = _arpack.__dict__[ltr + 'neupd']
+
+        self.iterate_infodict = _NAUPD_ERRORS[ltr]
+        self.extract_infodict = _NEUPD_ERRORS[ltr]
+
+        self.ipntr = np.zeros(14, arpack_int)
+
+        if self.tp in 'FD':
+            # Use _aligned_zeros to work around a f2py bug in Numpy 1.9.1
+            self.rwork = _aligned_zeros(self.ncv, self.tp.lower())
+        else:
+            self.rwork = None
+
+    def iterate(self):
+        if self.tp in 'fd':
+            results = self._arpack_solver(self.ido, self.bmat, self.which, self.k,
+                                          self.tol, self.resid, self.v, self.iparam,
+                                          self.ipntr, self.workd, self.workl, self.info)
+            self.ido, self.tol, self.resid, self.v, \
+                self.iparam, self.ipntr, self.info = results
+
+        else:
+            results = self._arpack_solver(self.ido, self.bmat, self.which, self.k,
+                                          self.tol, self.resid, self.v, self.iparam,
+                                          self.ipntr, self.workd, self.workl,
+                                          self.rwork, self.info)
+            self.ido, self.tol, self.resid, self.v, \
+                self.iparam, self.ipntr, self.info = results
+
+
+        xslice = slice(self.ipntr[0] - 1, self.ipntr[0] - 1 + self.n)
+        yslice = slice(self.ipntr[1] - 1, self.ipntr[1] - 1 + self.n)
+        if self.ido == -1:
+            # initialization
+            self.workd[yslice] = self.OP(self.workd[xslice])
+        elif self.ido == 1:
+            # compute y = Op*x
+            if self.mode in (1, 2):
+                self.workd[yslice] = self.OP(self.workd[xslice])
+            else:
+                Bxslice = slice(self.ipntr[2] - 1, self.ipntr[2] - 1 + self.n)
+                self.workd[yslice] = self.OPa(self.workd[Bxslice])
+        elif self.ido == 2:
+            self.workd[yslice] = self.B(self.workd[xslice])
+        elif self.ido == 3:
+            raise ValueError("ARPACK requested user shifts.  Assure ISHIFT==0")
+        else:
+            self.converged = True
+
+            if self.info == 0:
+                pass
+            elif self.info == 1:
+                self._raise_no_convergence()
+            else:
+                raise ArpackError(self.info, infodict=self.iterate_infodict)
+
+    def extract(self, return_eigenvectors):
+        k, n = self.k, self.n
+
+        ierr = 0
+        howmny = 'A'  # return all eigenvectors
+        sselect = np.zeros(self.ncv, 'int')  # unused
+        sigmar = np.real(self.sigma)
+        sigmai = np.imag(self.sigma)
+        workev = np.zeros(3 * self.ncv, self.tp)
+
+        if self.tp in 'fd':
+            dr = np.zeros(k + 1, self.tp)
+            di = np.zeros(k + 1, self.tp)
+            zr = np.zeros((n, k + 1), self.tp)
+            dr, di, zr, ierr = \
+                self._arpack_extract(return_eigenvectors,
+                       howmny, sselect, sigmar, sigmai, workev,
+                       self.bmat, self.which, k, self.tol, self.resid,
+                       self.v, self.iparam, self.ipntr,
+                       self.workd, self.workl, self.info)
+            if ierr != 0:
+                raise ArpackError(ierr, infodict=self.extract_infodict)
+            nreturned = self.iparam[4]  # number of good eigenvalues returned
+
+            # Build complex eigenvalues from real and imaginary parts
+            d = dr + 1.0j * di
+
+            # Arrange the eigenvectors: complex eigenvectors are stored as
+            # real,imaginary in consecutive columns
+            z = zr.astype(self.tp.upper())
+
+            # The ARPACK nonsymmetric real and double interface (s,d)naupd
+            # return eigenvalues and eigenvectors in real (float,double)
+            # arrays.
+
+            # Efficiency: this should check that return_eigenvectors == True
+            #  before going through this construction.
+            if sigmai == 0:
+                i = 0
+                while i <= k:
+                    # check if complex
+                    if abs(d[i].imag) != 0:
+                        # this is a complex conjugate pair with eigenvalues
+                        # in consecutive columns
+                        if i < k:
+                            z[:, i] = zr[:, i] + 1.0j * zr[:, i + 1]
+                            z[:, i + 1] = z[:, i].conjugate()
+                            i += 1
+                        else:
+                            #last eigenvalue is complex: the imaginary part of
+                            # the eigenvector has not been returned
+                            #this can only happen if nreturned > k, so we'll
+                            # throw out this case.
+                            nreturned -= 1
+                    i += 1
+
+            else:
+                # real matrix, mode 3 or 4, imag(sigma) is nonzero:
+                # see remark 3 in <s,d>neupd.f
+                # Build complex eigenvalues from real and imaginary parts
+                i = 0
+                while i <= k:
+                    if abs(d[i].imag) == 0:
+                        d[i] = np.dot(zr[:, i], self.matvec(zr[:, i]))
+                    else:
+                        if i < k:
+                            z[:, i] = zr[:, i] + 1.0j * zr[:, i + 1]
+                            z[:, i + 1] = z[:, i].conjugate()
+                            d[i] = ((np.dot(zr[:, i],
+                                            self.matvec(zr[:, i]))
+                                     + np.dot(zr[:, i + 1],
+                                              self.matvec(zr[:, i + 1])))
+                                    + 1j * (np.dot(zr[:, i],
+                                                   self.matvec(zr[:, i + 1]))
+                                            - np.dot(zr[:, i + 1],
+                                                     self.matvec(zr[:, i]))))
+                            d[i + 1] = d[i].conj()
+                            i += 1
+                        else:
+                            #last eigenvalue is complex: the imaginary part of
+                            # the eigenvector has not been returned
+                            #this can only happen if nreturned > k, so we'll
+                            # throw out this case.
+                            nreturned -= 1
+                    i += 1
+
+            # Now we have k+1 possible eigenvalues and eigenvectors
+            # Return the ones specified by the keyword "which"
+
+            if nreturned <= k:
+                # we got less or equal as many eigenvalues we wanted
+                d = d[:nreturned]
+                z = z[:, :nreturned]
+            else:
+                # we got one extra eigenvalue (likely a cc pair, but which?)
+                if self.mode in (1, 2):
+                    rd = d
+                elif self.mode in (3, 4):
+                    rd = 1 / (d - self.sigma)
+
+                if self.which in ['LR', 'SR']:
+                    ind = np.argsort(rd.real)
+                elif self.which in ['LI', 'SI']:
+                    # for LI,SI ARPACK returns largest,smallest
+                    # abs(imaginary) (complex pairs come together)
+                    ind = np.argsort(abs(rd.imag))
+                else:
+                    ind = np.argsort(abs(rd))
+
+                if self.which in ['LR', 'LM', 'LI']:
+                    ind = ind[-k:][::-1]
+                elif self.which in ['SR', 'SM', 'SI']:
+                    ind = ind[:k]
+
+                d = d[ind]
+                z = z[:, ind]
+        else:
+            # complex is so much simpler...
+            d, z, ierr =\
+                    self._arpack_extract(return_eigenvectors,
+                           howmny, sselect, self.sigma, workev,
+                           self.bmat, self.which, k, self.tol, self.resid,
+                           self.v, self.iparam, self.ipntr,
+                           self.workd, self.workl, self.rwork, ierr)
+
+            if ierr != 0:
+                raise ArpackError(ierr, infodict=self.extract_infodict)
+
+            k_ok = self.iparam[4]
+            d = d[:k_ok]
+            z = z[:, :k_ok]
+
+        if return_eigenvectors:
+            return d, z
+        else:
+            return d
+
+class SpLuInv(LinearOperator):
+    """
+    SpLuInv:
+       helper class to repeatedly solve M*x=b
+       using a sparse LU-decomposition of M
+    """
+
+    def __init__(self, M):
+        self.M_lu = splu(M)
+        self.shape = M.shape
+        self.dtype = M.dtype
+        self.isreal = not np.issubdtype(self.dtype, np.complexfloating)
+
+    def _matvec(self, x):
+        # careful here: splu.solve will throw away imaginary
+        # part of x if M is real
+        x = np.asarray(x)
+        if self.isreal and np.issubdtype(x.dtype, np.complexfloating):
+            return (self.M_lu.solve(np.real(x).astype(self.dtype))
+                    + 1j * self.M_lu.solve(np.imag(x).astype(self.dtype)))
+        else:
+            return self.M_lu.solve(x.astype(self.dtype))
+
+
+class LuInv(LinearOperator):
+    """
+    LuInv:
+       helper class to repeatedly solve M*x=b
+       using an LU-decomposition of M
+    """
+
+    def __init__(self, M):
+        self.M_lu = lu_factor(M)
+        self.shape = M.shape
+        self.dtype = M.dtype
+
+    def _matvec(self, x):
+        return lu_solve(self.M_lu, x)
+
+
+def gmres_loose(A, b, tol):
+    """
+    gmres with looser termination condition.
+    """
+    b = np.asarray(b)
+    min_tol = 1000 * np.sqrt(b.size) * np.finfo(b.dtype).eps
+    return gmres(A, b, rtol=max(tol, min_tol), atol=0)
+
+
+class IterInv(LinearOperator):
+    """
+    IterInv:
+       helper class to repeatedly solve M*x=b
+       using an iterative method.
+    """
+
+    def __init__(self, M, ifunc=gmres_loose, tol=0):
+        self.M = M
+        if hasattr(M, 'dtype'):
+            self.dtype = M.dtype
+        else:
+            x = np.zeros(M.shape[1])
+            self.dtype = (M * x).dtype
+        self.shape = M.shape
+
+        if tol <= 0:
+            # when tol=0, ARPACK uses machine tolerance as calculated
+            # by LAPACK's _LAMCH function.  We should match this
+            tol = 2 * np.finfo(self.dtype).eps
+        self.ifunc = ifunc
+        self.tol = tol
+
+    def _matvec(self, x):
+        b, info = self.ifunc(self.M, x, tol=self.tol)
+        if info != 0:
+            raise ValueError("Error in inverting M: function "
+                             "%s did not converge (info = %i)."
+                             % (self.ifunc.__name__, info))
+        return b
+
+
+class IterOpInv(LinearOperator):
+    """
+    IterOpInv:
+       helper class to repeatedly solve [A-sigma*M]*x = b
+       using an iterative method
+    """
+
+    def __init__(self, A, M, sigma, ifunc=gmres_loose, tol=0):
+        self.A = A
+        self.M = M
+        self.sigma = sigma
+
+        def mult_func(x):
+            return A.matvec(x) - sigma * M.matvec(x)
+
+        def mult_func_M_None(x):
+            return A.matvec(x) - sigma * x
+
+        x = np.zeros(A.shape[1])
+        if M is None:
+            dtype = mult_func_M_None(x).dtype
+            self.OP = LinearOperator(self.A.shape,
+                                     mult_func_M_None,
+                                     dtype=dtype)
+        else:
+            dtype = mult_func(x).dtype
+            self.OP = LinearOperator(self.A.shape,
+                                     mult_func,
+                                     dtype=dtype)
+        self.shape = A.shape
+
+        if tol <= 0:
+            # when tol=0, ARPACK uses machine tolerance as calculated
+            # by LAPACK's _LAMCH function.  We should match this
+            tol = 2 * np.finfo(self.OP.dtype).eps
+        self.ifunc = ifunc
+        self.tol = tol
+
+    def _matvec(self, x):
+        b, info = self.ifunc(self.OP, x, tol=self.tol)
+        if info != 0:
+            raise ValueError("Error in inverting [A-sigma*M]: function "
+                             "%s did not converge (info = %i)."
+                             % (self.ifunc.__name__, info))
+        return b
+
+    @property
+    def dtype(self):
+        return self.OP.dtype
+
+
+def _fast_spmatrix_to_csc(A, hermitian=False):
+    """Convert sparse matrix to CSC (by transposing, if possible)"""
+    if (A.format == "csr" and hermitian
+            and not np.issubdtype(A.dtype, np.complexfloating)):
+        return A.T
+    elif is_pydata_spmatrix(A):
+        # No need to convert
+        return A
+    else:
+        return A.tocsc()
+
+
+def get_inv_matvec(M, hermitian=False, tol=0):
+    if isdense(M):
+        return LuInv(M).matvec
+    elif issparse(M) or is_pydata_spmatrix(M):
+        M = _fast_spmatrix_to_csc(M, hermitian=hermitian)
+        return SpLuInv(M).matvec
+    else:
+        return IterInv(M, tol=tol).matvec
+
+
+def get_OPinv_matvec(A, M, sigma, hermitian=False, tol=0):
+    if sigma == 0:
+        return get_inv_matvec(A, hermitian=hermitian, tol=tol)
+
+    if M is None:
+        #M is the identity matrix
+        if isdense(A):
+            if (np.issubdtype(A.dtype, np.complexfloating)
+                    or np.imag(sigma) == 0):
+                A = np.copy(A)
+            else:
+                A = A + 0j
+            A.flat[::A.shape[1] + 1] -= sigma
+            return LuInv(A).matvec
+        elif issparse(A) or is_pydata_spmatrix(A):
+            A = A - sigma * eye(A.shape[0])
+            A = _fast_spmatrix_to_csc(A, hermitian=hermitian)
+            return SpLuInv(A).matvec
+        else:
+            return IterOpInv(aslinearoperator(A),
+                             M, sigma, tol=tol).matvec
+    else:
+        if ((not isdense(A) and not issparse(A) and not is_pydata_spmatrix(A)) or
+                (not isdense(M) and not issparse(M) and not is_pydata_spmatrix(A))):
+            return IterOpInv(aslinearoperator(A),
+                             aslinearoperator(M),
+                             sigma, tol=tol).matvec
+        elif isdense(A) or isdense(M):
+            return LuInv(A - sigma * M).matvec
+        else:
+            OP = A - sigma * M
+            OP = _fast_spmatrix_to_csc(OP, hermitian=hermitian)
+            return SpLuInv(OP).matvec
+
+
+# ARPACK is not threadsafe or reentrant (SAVE variables), so we need a
+# lock and a re-entering check.
+_ARPACK_LOCK = ReentrancyLock("Nested calls to eigs/eighs not allowed: "
+                              "ARPACK is not re-entrant")
+
+
+def eigs(A, k=6, M=None, sigma=None, which='LM', v0=None,
+         ncv=None, maxiter=None, tol=0, return_eigenvectors=True,
+         Minv=None, OPinv=None, OPpart=None):
+    """
+    Find k eigenvalues and eigenvectors of the square matrix A.
+
+    Solves ``A @ x[i] = w[i] * x[i]``, the standard eigenvalue problem
+    for w[i] eigenvalues with corresponding eigenvectors x[i].
+
+    If M is specified, solves ``A @ x[i] = w[i] * M @ x[i]``, the
+    generalized eigenvalue problem for w[i] eigenvalues
+    with corresponding eigenvectors x[i]
+
+    Parameters
+    ----------
+    A : ndarray, sparse matrix or LinearOperator
+        An array, sparse matrix, or LinearOperator representing
+        the operation ``A @ x``, where A is a real or complex square matrix.
+    k : int, optional
+        The number of eigenvalues and eigenvectors desired.
+        `k` must be smaller than N-1. It is not possible to compute all
+        eigenvectors of a matrix.
+    M : ndarray, sparse matrix or LinearOperator, optional
+        An array, sparse matrix, or LinearOperator representing
+        the operation M@x for the generalized eigenvalue problem
+
+            A @ x = w * M @ x.
+
+        M must represent a real symmetric matrix if A is real, and must
+        represent a complex Hermitian matrix if A is complex. For best
+        results, the data type of M should be the same as that of A.
+        Additionally:
+
+            If `sigma` is None, M is positive definite
+
+            If sigma is specified, M is positive semi-definite
+
+        If sigma is None, eigs requires an operator to compute the solution
+        of the linear equation ``M @ x = b``.  This is done internally via a
+        (sparse) LU decomposition for an explicit matrix M, or via an
+        iterative solver for a general linear operator.  Alternatively,
+        the user can supply the matrix or operator Minv, which gives
+        ``x = Minv @ b = M^-1 @ b``.
+    sigma : real or complex, optional
+        Find eigenvalues near sigma using shift-invert mode.  This requires
+        an operator to compute the solution of the linear system
+        ``[A - sigma * M] @ x = b``, where M is the identity matrix if
+        unspecified. This is computed internally via a (sparse) LU
+        decomposition for explicit matrices A & M, or via an iterative
+        solver if either A or M is a general linear operator.
+        Alternatively, the user can supply the matrix or operator OPinv,
+        which gives ``x = OPinv @ b = [A - sigma * M]^-1 @ b``.
+        For a real matrix A, shift-invert can either be done in imaginary
+        mode or real mode, specified by the parameter OPpart ('r' or 'i').
+        Note that when sigma is specified, the keyword 'which' (below)
+        refers to the shifted eigenvalues ``w'[i]`` where:
+
+            If A is real and OPpart == 'r' (default),
+              ``w'[i] = 1/2 * [1/(w[i]-sigma) + 1/(w[i]-conj(sigma))]``.
+
+            If A is real and OPpart == 'i',
+              ``w'[i] = 1/2i * [1/(w[i]-sigma) - 1/(w[i]-conj(sigma))]``.
+
+            If A is complex, ``w'[i] = 1/(w[i]-sigma)``.
+
+    v0 : ndarray, optional
+        Starting vector for iteration.
+        Default: random
+    ncv : int, optional
+        The number of Lanczos vectors generated
+        `ncv` must be greater than `k`; it is recommended that ``ncv > 2*k``.
+        Default: ``min(n, max(2*k + 1, 20))``
+    which : str, ['LM' | 'SM' | 'LR' | 'SR' | 'LI' | 'SI'], optional
+        Which `k` eigenvectors and eigenvalues to find:
+
+            'LM' : largest magnitude
+
+            'SM' : smallest magnitude
+
+            'LR' : largest real part
+
+            'SR' : smallest real part
+
+            'LI' : largest imaginary part
+
+            'SI' : smallest imaginary part
+
+        When sigma != None, 'which' refers to the shifted eigenvalues w'[i]
+        (see discussion in 'sigma', above).  ARPACK is generally better
+        at finding large values than small values.  If small eigenvalues are
+        desired, consider using shift-invert mode for better performance.
+    maxiter : int, optional
+        Maximum number of Arnoldi update iterations allowed
+        Default: ``n*10``
+    tol : float, optional
+        Relative accuracy for eigenvalues (stopping criterion)
+        The default value of 0 implies machine precision.
+    return_eigenvectors : bool, optional
+        Return eigenvectors (True) in addition to eigenvalues
+    Minv : ndarray, sparse matrix or LinearOperator, optional
+        See notes in M, above.
+    OPinv : ndarray, sparse matrix or LinearOperator, optional
+        See notes in sigma, above.
+    OPpart : {'r' or 'i'}, optional
+        See notes in sigma, above
+
+    Returns
+    -------
+    w : ndarray
+        Array of k eigenvalues.
+    v : ndarray
+        An array of `k` eigenvectors.
+        ``v[:, i]`` is the eigenvector corresponding to the eigenvalue w[i].
+
+    Raises
+    ------
+    ArpackNoConvergence
+        When the requested convergence is not obtained.
+        The currently converged eigenvalues and eigenvectors can be found
+        as ``eigenvalues`` and ``eigenvectors`` attributes of the exception
+        object.
+
+    See Also
+    --------
+    eigsh : eigenvalues and eigenvectors for symmetric matrix A
+    svds : singular value decomposition for a matrix A
+
+    Notes
+    -----
+    This function is a wrapper to the ARPACK [1]_ SNEUPD, DNEUPD, CNEUPD,
+    ZNEUPD, functions which use the Implicitly Restarted Arnoldi Method to
+    find the eigenvalues and eigenvectors [2]_.
+
+    References
+    ----------
+    .. [1] ARPACK Software, https://github.com/opencollab/arpack-ng
+    .. [2] R. B. Lehoucq, D. C. Sorensen, and C. Yang,  ARPACK USERS GUIDE:
+       Solution of Large Scale Eigenvalue Problems by Implicitly Restarted
+       Arnoldi Methods. SIAM, Philadelphia, PA, 1998.
+
+    Examples
+    --------
+    Find 6 eigenvectors of the identity matrix:
+
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg import eigs
+    >>> id = np.eye(13)
+    >>> vals, vecs = eigs(id, k=6)
+    >>> vals
+    array([ 1.+0.j,  1.+0.j,  1.+0.j,  1.+0.j,  1.+0.j,  1.+0.j])
+    >>> vecs.shape
+    (13, 6)
+
+    """
+    A = convert_pydata_sparse_to_scipy(A)
+    M = convert_pydata_sparse_to_scipy(M)
+    if A.shape[0] != A.shape[1]:
+        raise ValueError(f'expected square matrix (shape={A.shape})')
+    if M is not None:
+        if M.shape != A.shape:
+            raise ValueError(f'wrong M dimensions {M.shape}, should be {A.shape}')
+        if np.dtype(M.dtype).char.lower() != np.dtype(A.dtype).char.lower():
+            warnings.warn('M does not have the same type precision as A. '
+                          'This may adversely affect ARPACK convergence',
+                          stacklevel=2)
+
+    n = A.shape[0]
+
+    if k <= 0:
+        raise ValueError("k=%d must be greater than 0." % k)
+
+    if k >= n - 1:
+        warnings.warn("k >= N - 1 for N * N square matrix. "
+                      "Attempting to use scipy.linalg.eig instead.",
+                      RuntimeWarning, stacklevel=2)
+
+        if issparse(A):
+            raise TypeError("Cannot use scipy.linalg.eig for sparse A with "
+                            "k >= N - 1. Use scipy.linalg.eig(A.toarray()) or"
+                            " reduce k.")
+        if isinstance(A, LinearOperator):
+            raise TypeError("Cannot use scipy.linalg.eig for LinearOperator "
+                            "A with k >= N - 1.")
+        if isinstance(M, LinearOperator):
+            raise TypeError("Cannot use scipy.linalg.eig for LinearOperator "
+                            "M with k >= N - 1.")
+
+        return eig(A, b=M, right=return_eigenvectors)
+
+    if sigma is None:
+        matvec = aslinearoperator(A).matvec
+
+        if OPinv is not None:
+            raise ValueError("OPinv should not be specified "
+                             "with sigma = None.")
+        if OPpart is not None:
+            raise ValueError("OPpart should not be specified with "
+                             "sigma = None or complex A")
+
+        if M is None:
+            #standard eigenvalue problem
+            mode = 1
+            M_matvec = None
+            Minv_matvec = None
+            if Minv is not None:
+                raise ValueError("Minv should not be "
+                                 "specified with M = None.")
+        else:
+            #general eigenvalue problem
+            mode = 2
+            if Minv is None:
+                Minv_matvec = get_inv_matvec(M, hermitian=True, tol=tol)
+            else:
+                Minv = aslinearoperator(Minv)
+                Minv_matvec = Minv.matvec
+            M_matvec = aslinearoperator(M).matvec
+    else:
+        #sigma is not None: shift-invert mode
+        if np.issubdtype(A.dtype, np.complexfloating):
+            if OPpart is not None:
+                raise ValueError("OPpart should not be specified "
+                                 "with sigma=None or complex A")
+            mode = 3
+        elif OPpart is None or OPpart.lower() == 'r':
+            mode = 3
+        elif OPpart.lower() == 'i':
+            if np.imag(sigma) == 0:
+                raise ValueError("OPpart cannot be 'i' if sigma is real")
+            mode = 4
+        else:
+            raise ValueError("OPpart must be one of ('r','i')")
+
+        matvec = aslinearoperator(A).matvec
+        if Minv is not None:
+            raise ValueError("Minv should not be specified when sigma is")
+        if OPinv is None:
+            Minv_matvec = get_OPinv_matvec(A, M, sigma,
+                                           hermitian=False, tol=tol)
+        else:
+            OPinv = aslinearoperator(OPinv)
+            Minv_matvec = OPinv.matvec
+        if M is None:
+            M_matvec = None
+        else:
+            M_matvec = aslinearoperator(M).matvec
+
+    params = _UnsymmetricArpackParams(n, k, A.dtype.char, matvec, mode,
+                                      M_matvec, Minv_matvec, sigma,
+                                      ncv, v0, maxiter, which, tol)
+
+    with _ARPACK_LOCK:
+        while not params.converged:
+            params.iterate()
+
+        return params.extract(return_eigenvectors)
+
+
+def eigsh(A, k=6, M=None, sigma=None, which='LM', v0=None,
+          ncv=None, maxiter=None, tol=0, return_eigenvectors=True,
+          Minv=None, OPinv=None, mode='normal'):
+    """
+    Find k eigenvalues and eigenvectors of the real symmetric square matrix
+    or complex Hermitian matrix A.
+
+    Solves ``A @ x[i] = w[i] * x[i]``, the standard eigenvalue problem for
+    w[i] eigenvalues with corresponding eigenvectors x[i].
+
+    If M is specified, solves ``A @ x[i] = w[i] * M @ x[i]``, the
+    generalized eigenvalue problem for w[i] eigenvalues
+    with corresponding eigenvectors x[i].
+
+    Note that there is no specialized routine for the case when A is a complex
+    Hermitian matrix. In this case, ``eigsh()`` will call ``eigs()`` and return the
+    real parts of the eigenvalues thus obtained.
+
+    Parameters
+    ----------
+    A : ndarray, sparse matrix or LinearOperator
+        A square operator representing the operation ``A @ x``, where ``A`` is
+        real symmetric or complex Hermitian. For buckling mode (see below)
+        ``A`` must additionally be positive-definite.
+    k : int, optional
+        The number of eigenvalues and eigenvectors desired.
+        `k` must be smaller than N. It is not possible to compute all
+        eigenvectors of a matrix.
+
+    Returns
+    -------
+    w : array
+        Array of k eigenvalues.
+    v : array
+        An array representing the `k` eigenvectors.  The column ``v[:, i]`` is
+        the eigenvector corresponding to the eigenvalue ``w[i]``.
+
+    Other Parameters
+    ----------------
+    M : An N x N matrix, array, sparse matrix, or linear operator representing
+        the operation ``M @ x`` for the generalized eigenvalue problem
+
+            A @ x = w * M @ x.
+
+        M must represent a real symmetric matrix if A is real, and must
+        represent a complex Hermitian matrix if A is complex. For best
+        results, the data type of M should be the same as that of A.
+        Additionally:
+
+            If sigma is None, M is symmetric positive definite.
+
+            If sigma is specified, M is symmetric positive semi-definite.
+
+            In buckling mode, M is symmetric indefinite.
+
+        If sigma is None, eigsh requires an operator to compute the solution
+        of the linear equation ``M @ x = b``. This is done internally via a
+        (sparse) LU decomposition for an explicit matrix M, or via an
+        iterative solver for a general linear operator.  Alternatively,
+        the user can supply the matrix or operator Minv, which gives
+        ``x = Minv @ b = M^-1 @ b``.
+    sigma : real
+        Find eigenvalues near sigma using shift-invert mode.  This requires
+        an operator to compute the solution of the linear system
+        ``[A - sigma * M] x = b``, where M is the identity matrix if
+        unspecified.  This is computed internally via a (sparse) LU
+        decomposition for explicit matrices A & M, or via an iterative
+        solver if either A or M is a general linear operator.
+        Alternatively, the user can supply the matrix or operator OPinv,
+        which gives ``x = OPinv @ b = [A - sigma * M]^-1 @ b``.
+        Note that when sigma is specified, the keyword 'which' refers to
+        the shifted eigenvalues ``w'[i]`` where:
+
+            if mode == 'normal', ``w'[i] = 1 / (w[i] - sigma)``.
+
+            if mode == 'cayley', ``w'[i] = (w[i] + sigma) / (w[i] - sigma)``.
+
+            if mode == 'buckling', ``w'[i] = w[i] / (w[i] - sigma)``.
+
+        (see further discussion in 'mode' below)
+    v0 : ndarray, optional
+        Starting vector for iteration.
+        Default: random
+    ncv : int, optional
+        The number of Lanczos vectors generated ncv must be greater than k and
+        smaller than n; it is recommended that ``ncv > 2*k``.
+        Default: ``min(n, max(2*k + 1, 20))``
+    which : str ['LM' | 'SM' | 'LA' | 'SA' | 'BE']
+        If A is a complex Hermitian matrix, 'BE' is invalid.
+        Which `k` eigenvectors and eigenvalues to find:
+
+            'LM' : Largest (in magnitude) eigenvalues.
+
+            'SM' : Smallest (in magnitude) eigenvalues.
+
+            'LA' : Largest (algebraic) eigenvalues.
+
+            'SA' : Smallest (algebraic) eigenvalues.
+
+            'BE' : Half (k/2) from each end of the spectrum.
+
+        When k is odd, return one more (k/2+1) from the high end.
+        When sigma != None, 'which' refers to the shifted eigenvalues ``w'[i]``
+        (see discussion in 'sigma', above).  ARPACK is generally better
+        at finding large values than small values.  If small eigenvalues are
+        desired, consider using shift-invert mode for better performance.
+    maxiter : int, optional
+        Maximum number of Arnoldi update iterations allowed.
+        Default: ``n*10``
+    tol : float
+        Relative accuracy for eigenvalues (stopping criterion).
+        The default value of 0 implies machine precision.
+    Minv : N x N matrix, array, sparse matrix, or LinearOperator
+        See notes in M, above.
+    OPinv : N x N matrix, array, sparse matrix, or LinearOperator
+        See notes in sigma, above.
+    return_eigenvectors : bool
+        Return eigenvectors (True) in addition to eigenvalues.
+        This value determines the order in which eigenvalues are sorted.
+        The sort order is also dependent on the `which` variable.
+
+            For which = 'LM' or 'SA':
+                If `return_eigenvectors` is True, eigenvalues are sorted by
+                algebraic value.
+
+                If `return_eigenvectors` is False, eigenvalues are sorted by
+                absolute value.
+
+            For which = 'BE' or 'LA':
+                eigenvalues are always sorted by algebraic value.
+
+            For which = 'SM':
+                If `return_eigenvectors` is True, eigenvalues are sorted by
+                algebraic value.
+
+                If `return_eigenvectors` is False, eigenvalues are sorted by
+                decreasing absolute value.
+
+    mode : string ['normal' | 'buckling' | 'cayley']
+        Specify strategy to use for shift-invert mode.  This argument applies
+        only for real-valued A and sigma != None.  For shift-invert mode,
+        ARPACK internally solves the eigenvalue problem
+        ``OP @ x'[i] = w'[i] * B @ x'[i]``
+        and transforms the resulting Ritz vectors x'[i] and Ritz values w'[i]
+        into the desired eigenvectors and eigenvalues of the problem
+        ``A @ x[i] = w[i] * M @ x[i]``.
+        The modes are as follows:
+
+            'normal' :
+                OP = [A - sigma * M]^-1 @ M,
+                B = M,
+                w'[i] = 1 / (w[i] - sigma)
+
+            'buckling' :
+                OP = [A - sigma * M]^-1 @ A,
+                B = A,
+                w'[i] = w[i] / (w[i] - sigma)
+
+            'cayley' :
+                OP = [A - sigma * M]^-1 @ [A + sigma * M],
+                B = M,
+                w'[i] = (w[i] + sigma) / (w[i] - sigma)
+
+        The choice of mode will affect which eigenvalues are selected by
+        the keyword 'which', and can also impact the stability of
+        convergence (see [2] for a discussion).
+
+    Raises
+    ------
+    ArpackNoConvergence
+        When the requested convergence is not obtained.
+
+        The currently converged eigenvalues and eigenvectors can be found
+        as ``eigenvalues`` and ``eigenvectors`` attributes of the exception
+        object.
+
+    See Also
+    --------
+    eigs : eigenvalues and eigenvectors for a general (nonsymmetric) matrix A
+    svds : singular value decomposition for a matrix A
+
+    Notes
+    -----
+    This function is a wrapper to the ARPACK [1]_ SSEUPD and DSEUPD
+    functions which use the Implicitly Restarted Lanczos Method to
+    find the eigenvalues and eigenvectors [2]_.
+
+    References
+    ----------
+    .. [1] ARPACK Software, https://github.com/opencollab/arpack-ng
+    .. [2] R. B. Lehoucq, D. C. Sorensen, and C. Yang,  ARPACK USERS GUIDE:
+       Solution of Large Scale Eigenvalue Problems by Implicitly Restarted
+       Arnoldi Methods. SIAM, Philadelphia, PA, 1998.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg import eigsh
+    >>> identity = np.eye(13)
+    >>> eigenvalues, eigenvectors = eigsh(identity, k=6)
+    >>> eigenvalues
+    array([1., 1., 1., 1., 1., 1.])
+    >>> eigenvectors.shape
+    (13, 6)
+
+    """
+    # complex Hermitian matrices should be solved with eigs
+    if np.issubdtype(A.dtype, np.complexfloating):
+        if mode != 'normal':
+            raise ValueError(f"mode={mode} cannot be used with complex matrix A")
+        if which == 'BE':
+            raise ValueError("which='BE' cannot be used with complex matrix A")
+        elif which == 'LA':
+            which = 'LR'
+        elif which == 'SA':
+            which = 'SR'
+        ret = eigs(A, k, M=M, sigma=sigma, which=which, v0=v0,
+                   ncv=ncv, maxiter=maxiter, tol=tol,
+                   return_eigenvectors=return_eigenvectors, Minv=Minv,
+                   OPinv=OPinv)
+
+        if return_eigenvectors:
+            return ret[0].real, ret[1]
+        else:
+            return ret.real
+
+    if A.shape[0] != A.shape[1]:
+        raise ValueError(f'expected square matrix (shape={A.shape})')
+    if M is not None:
+        if M.shape != A.shape:
+            raise ValueError(f'wrong M dimensions {M.shape}, should be {A.shape}')
+        if np.dtype(M.dtype).char.lower() != np.dtype(A.dtype).char.lower():
+            warnings.warn('M does not have the same type precision as A. '
+                          'This may adversely affect ARPACK convergence',
+                          stacklevel=2)
+
+    n = A.shape[0]
+
+    if k <= 0:
+        raise ValueError("k must be greater than 0.")
+
+    if k >= n:
+        warnings.warn("k >= N for N * N square matrix. "
+                      "Attempting to use scipy.linalg.eigh instead.",
+                      RuntimeWarning, stacklevel=2)
+
+        if issparse(A):
+            raise TypeError("Cannot use scipy.linalg.eigh for sparse A with "
+                            "k >= N. Use scipy.linalg.eigh(A.toarray()) or"
+                            " reduce k.")
+        if isinstance(A, LinearOperator):
+            raise TypeError("Cannot use scipy.linalg.eigh for LinearOperator "
+                            "A with k >= N.")
+        if isinstance(M, LinearOperator):
+            raise TypeError("Cannot use scipy.linalg.eigh for LinearOperator "
+                            "M with k >= N.")
+
+        return eigh(A, b=M, eigvals_only=not return_eigenvectors)
+
+    if sigma is None:
+        A = aslinearoperator(A)
+        matvec = A.matvec
+
+        if OPinv is not None:
+            raise ValueError("OPinv should not be specified "
+                             "with sigma = None.")
+        if M is None:
+            #standard eigenvalue problem
+            mode = 1
+            M_matvec = None
+            Minv_matvec = None
+            if Minv is not None:
+                raise ValueError("Minv should not be "
+                                 "specified with M = None.")
+        else:
+            #general eigenvalue problem
+            mode = 2
+            if Minv is None:
+                Minv_matvec = get_inv_matvec(M, hermitian=True, tol=tol)
+            else:
+                Minv = aslinearoperator(Minv)
+                Minv_matvec = Minv.matvec
+            M_matvec = aslinearoperator(M).matvec
+    else:
+        # sigma is not None: shift-invert mode
+        if Minv is not None:
+            raise ValueError("Minv should not be specified when sigma is")
+
+        # normal mode
+        if mode == 'normal':
+            mode = 3
+            matvec = None
+            if OPinv is None:
+                Minv_matvec = get_OPinv_matvec(A, M, sigma,
+                                               hermitian=True, tol=tol)
+            else:
+                OPinv = aslinearoperator(OPinv)
+                Minv_matvec = OPinv.matvec
+            if M is None:
+                M_matvec = None
+            else:
+                M = aslinearoperator(M)
+                M_matvec = M.matvec
+
+        # buckling mode
+        elif mode == 'buckling':
+            mode = 4
+            if OPinv is None:
+                Minv_matvec = get_OPinv_matvec(A, M, sigma,
+                                               hermitian=True, tol=tol)
+            else:
+                Minv_matvec = aslinearoperator(OPinv).matvec
+            matvec = aslinearoperator(A).matvec
+            M_matvec = None
+
+        # cayley-transform mode
+        elif mode == 'cayley':
+            mode = 5
+            matvec = aslinearoperator(A).matvec
+            if OPinv is None:
+                Minv_matvec = get_OPinv_matvec(A, M, sigma,
+                                               hermitian=True, tol=tol)
+            else:
+                Minv_matvec = aslinearoperator(OPinv).matvec
+            if M is None:
+                M_matvec = None
+            else:
+                M_matvec = aslinearoperator(M).matvec
+
+        # unrecognized mode
+        else:
+            raise ValueError(f"unrecognized mode '{mode}'")
+
+    params = _SymmetricArpackParams(n, k, A.dtype.char, matvec, mode,
+                                    M_matvec, Minv_matvec, sigma,
+                                    ncv, v0, maxiter, which, tol)
+
+    with _ARPACK_LOCK:
+        while not params.converged:
+            params.iterate()
+
+        return params.extract(return_eigenvectors)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/arpack/tests/test_arpack.py

@@ -0,0 +1,717 @@
+__usage__ = """
+To run tests locally:
+  python tests/test_arpack.py [-l<int>] [-v<int>]
+
+"""
+
+import threading
+import itertools
+
+import numpy as np
+
+from numpy.testing import assert_allclose, assert_equal, suppress_warnings
+from pytest import raises as assert_raises
+import pytest
+
+from numpy import dot, conj, random
+from scipy.linalg import eig, eigh
+from scipy.sparse import csc_array, csr_array, diags_array, random_array
+from scipy.sparse.linalg import LinearOperator, aslinearoperator
+from scipy.sparse.linalg._eigen.arpack import (eigs, eigsh, arpack,
+                                              ArpackNoConvergence)
+
+
+from scipy._lib._gcutils import assert_deallocated, IS_PYPY
+
+
+# precision for tests
+_ndigits = {'f': 3, 'd': 11, 'F': 3, 'D': 11}
+
+
+def _get_test_tolerance(type_char, mattype=None, D_type=None, which=None):
+    """
+    Return tolerance values suitable for a given test:
+
+    Parameters
+    ----------
+    type_char : {'f', 'd', 'F', 'D'}
+        Data type in ARPACK eigenvalue problem
+    mattype : {csr_array, aslinearoperator, asarray}, optional
+        Linear operator type
+
+    Returns
+    -------
+    tol
+        Tolerance to pass to the ARPACK routine
+    rtol
+        Relative tolerance for outputs
+    atol
+        Absolute tolerance for outputs
+
+    """
+
+    rtol = {'f': 3000 * np.finfo(np.float32).eps,
+            'F': 3000 * np.finfo(np.float32).eps,
+            'd': 2000 * np.finfo(np.float64).eps,
+            'D': 2000 * np.finfo(np.float64).eps}[type_char]
+    atol = rtol
+    tol = 0
+
+    if mattype is aslinearoperator and type_char in ('f', 'F'):
+        # iterative methods in single precision: worse errors
+        # also: bump ARPACK tolerance so that the iterative method converges
+        tol = 30 * np.finfo(np.float32).eps
+        rtol *= 5
+
+    if (
+        isinstance(mattype, type) and issubclass(mattype, csr_array)
+        and type_char in ('f', 'F')
+    ):
+        # sparse in single precision: worse errors
+        rtol *= 5
+
+    if (
+        which in ('LM', 'SM', 'LA')
+        and D_type.name == "gen-hermitian-Mc"
+    ):
+        if type_char == 'F':
+            # missing case 1, 2, and more, from PR 14798
+            rtol *= 5
+
+        if type_char == 'D':
+            # missing more cases, from PR 14798
+            rtol *= 10
+            atol *= 10
+
+    return tol, rtol, atol
+
+
+def generate_matrix(N, complex_=False, hermitian=False,
+                    pos_definite=False, sparse=False, rng=None):
+    M = rng.random((N, N))
+    if complex_:
+        M = M + 1j * rng.random((N, N))
+
+    if hermitian:
+        if pos_definite:
+            if sparse:
+                i = np.arange(N)
+                j = rng.randint(N, size=N-2)
+                i, j = np.meshgrid(i, j)
+                M[i, j] = 0
+            M = np.dot(M.conj(), M.T)
+        else:
+            M = np.dot(M.conj(), M.T)
+            if sparse:
+                i = rng.randint(N, size=N * N // 4)
+                j = rng.randint(N, size=N * N // 4)
+                ind = np.nonzero(i == j)
+                j[ind] = (j[ind] + 1) % N
+                M[i, j] = 0
+                M[j, i] = 0
+    else:
+        if sparse:
+            i = rng.randint(N, size=N * N // 2)
+            j = rng.randint(N, size=N * N // 2)
+            M[i, j] = 0
+    return M
+
+
+def generate_matrix_symmetric(N, pos_definite=False, sparse=False, rng=None):
+    M = rng.random((N, N))
+
+    M = 0.5 * (M + M.T)  # Make M symmetric
+
+    if pos_definite:
+        Id = N * np.eye(N)
+        if sparse:
+            M = csr_array(M)
+        M += Id
+    else:
+        if sparse:
+            M = csr_array(M)
+
+    return M
+
+
+def assert_allclose_cc(actual, desired, **kw):
+    """Almost equal or complex conjugates almost equal"""
+    try:
+        assert_allclose(actual, desired, **kw)
+    except AssertionError:
+        assert_allclose(actual, conj(desired), **kw)
+
+
+def argsort_which(eigenvalues, typ, k, which,
+                  sigma=None, OPpart=None, mode=None):
+    """Return sorted indices of eigenvalues using the "which" keyword
+    from eigs and eigsh"""
+    if sigma is None:
+        reval = np.round(eigenvalues, decimals=_ndigits[typ])
+    else:
+        if mode is None or mode == 'normal':
+            if OPpart is None:
+                reval = 1. / (eigenvalues - sigma)
+            elif OPpart == 'r':
+                reval = 0.5 * (1. / (eigenvalues - sigma)
+                               + 1. / (eigenvalues - np.conj(sigma)))
+            elif OPpart == 'i':
+                reval = -0.5j * (1. / (eigenvalues - sigma)
+                                 - 1. / (eigenvalues - np.conj(sigma)))
+        elif mode == 'cayley':
+            reval = (eigenvalues + sigma) / (eigenvalues - sigma)
+        elif mode == 'buckling':
+            reval = eigenvalues / (eigenvalues - sigma)
+        else:
+            raise ValueError(f"mode='{mode}' not recognized")
+
+        reval = np.round(reval, decimals=_ndigits[typ])
+
+    if which in ['LM', 'SM']:
+        ind = np.argsort(abs(reval))
+    elif which in ['LR', 'SR', 'LA', 'SA', 'BE']:
+        ind = np.argsort(np.real(reval))
+    elif which in ['LI', 'SI']:
+        # for LI,SI ARPACK returns largest,smallest abs(imaginary) why?
+        if typ.islower():
+            ind = np.argsort(abs(np.imag(reval)))
+        else:
+            ind = np.argsort(np.imag(reval))
+    else:
+        raise ValueError(f"which='{which}' is unrecognized")
+
+    if which in ['LM', 'LA', 'LR', 'LI']:
+        return ind[-k:]
+    elif which in ['SM', 'SA', 'SR', 'SI']:
+        return ind[:k]
+    elif which == 'BE':
+        return np.concatenate((ind[:k//2], ind[k//2-k:]))
+
+
+def eval_evec(symmetric, d, typ, k, which, v0=None, sigma=None,
+              mattype=np.asarray, OPpart=None, mode='normal'):
+    general = ('bmat' in d)
+
+    if symmetric:
+        eigs_func = eigsh
+    else:
+        eigs_func = eigs
+
+    if general:
+        err = (f"error for {eigs_func.__name__}:general, typ={typ}, which={which}, "
+               f"sigma={sigma}, mattype={mattype.__name__},"
+               f" OPpart={OPpart}, mode={mode}")
+    else:
+        err = (f"error for {eigs_func.__name__}:standard, typ={typ}, which={which}, "
+               f"sigma={sigma}, mattype={mattype.__name__}, "
+               f"OPpart={OPpart}, mode={mode}")
+
+    a = d['mat'].astype(typ)
+    ac = mattype(a)
+
+    if general:
+        b = d['bmat'].astype(typ)
+        bc = mattype(b)
+
+    # get exact eigenvalues
+    exact_eval = d['eval'].astype(typ.upper())
+    ind = argsort_which(exact_eval, typ, k, which,
+                        sigma, OPpart, mode)
+    exact_eval = exact_eval[ind]
+
+    # compute arpack eigenvalues
+    kwargs = dict(which=which, v0=v0, sigma=sigma)
+    if eigs_func is eigsh:
+        kwargs['mode'] = mode
+    else:
+        kwargs['OPpart'] = OPpart
+
+    # compute suitable tolerances
+    kwargs['tol'], rtol, atol = _get_test_tolerance(typ, mattype, d, which)
+    # on rare occasions, ARPACK routines return results that are proper
+    # eigenvalues and -vectors, but not necessarily the ones requested in
+    # the parameter which. This is inherent to the Krylov methods, and
+    # should not be treated as a failure. If such a rare situation
+    # occurs, the calculation is tried again (but at most a few times).
+    ntries = 0
+    while ntries < 5:
+        # solve
+        if general:
+            try:
+                eigenvalues, evec = eigs_func(ac, k, bc, **kwargs)
+            except ArpackNoConvergence:
+                kwargs['maxiter'] = 20*a.shape[0]
+                eigenvalues, evec = eigs_func(ac, k, bc, **kwargs)
+        else:
+            try:
+                eigenvalues, evec = eigs_func(ac, k, **kwargs)
+            except ArpackNoConvergence:
+                kwargs['maxiter'] = 20*a.shape[0]
+                eigenvalues, evec = eigs_func(ac, k, **kwargs)
+
+        ind = argsort_which(eigenvalues, typ, k, which,
+                            sigma, OPpart, mode)
+        eigenvalues = eigenvalues[ind]
+        evec = evec[:, ind]
+
+        try:
+            # check eigenvalues
+            assert_allclose_cc(eigenvalues, exact_eval, rtol=rtol, atol=atol,
+                               err_msg=err)
+            check_evecs = True
+        except AssertionError:
+            check_evecs = False
+            ntries += 1
+
+        if check_evecs:
+            # check eigenvectors
+            LHS = np.dot(a, evec)
+            if general:
+                RHS = eigenvalues * np.dot(b, evec)
+            else:
+                RHS = eigenvalues * evec
+
+            assert_allclose(LHS, RHS, rtol=rtol, atol=atol, err_msg=err)
+            break
+
+    # check eigenvalues
+    assert_allclose_cc(eigenvalues, exact_eval, rtol=rtol, atol=atol, err_msg=err)
+
+
+class DictWithRepr(dict):
+    def __init__(self, name):
+        self.name = name
+
+    def __repr__(self):
+        return f"<{self.name}>"
+
+
+class SymmetricParams:
+    def __init__(self):
+        self.eigs = eigsh
+        self.which = ['LM', 'SM', 'LA', 'SA', 'BE']
+        self.mattypes = [csr_array, aslinearoperator, np.asarray]
+        self.sigmas_modes = {None: ['normal'],
+                             0.5: ['normal', 'buckling', 'cayley']}
+
+        # generate matrices
+        # these should all be float32 so that the eigenvalues
+        # are the same in float32 and float64
+        N = 6
+        rng = np.random.RandomState(2300)
+        Ar = generate_matrix(N, hermitian=True,
+                             pos_definite=True,
+                             rng=rng).astype('f').astype('d')
+        M = generate_matrix(N, hermitian=True,
+                            pos_definite=True,
+                            rng=rng).astype('f').astype('d')
+        Ac = generate_matrix(N, hermitian=True, pos_definite=True,
+                             complex_=True, rng=rng).astype('F').astype('D')
+        Mc = generate_matrix(N, hermitian=True, pos_definite=True,
+                             complex_=True, rng=rng).astype('F').astype('D')
+        v0 = rng.random(N)
+
+        # standard symmetric problem
+        SS = DictWithRepr("std-symmetric")
+        SS['mat'] = Ar
+        SS['v0'] = v0
+        SS['eval'] = eigh(SS['mat'], eigvals_only=True)
+
+        # general symmetric problem
+        GS = DictWithRepr("gen-symmetric")
+        GS['mat'] = Ar
+        GS['bmat'] = M
+        GS['v0'] = v0
+        GS['eval'] = eigh(GS['mat'], GS['bmat'], eigvals_only=True)
+
+        # standard hermitian problem
+        SH = DictWithRepr("std-hermitian")
+        SH['mat'] = Ac
+        SH['v0'] = v0
+        SH['eval'] = eigh(SH['mat'], eigvals_only=True)
+
+        # general hermitian problem
+        GH = DictWithRepr("gen-hermitian")
+        GH['mat'] = Ac
+        GH['bmat'] = M
+        GH['v0'] = v0
+        GH['eval'] = eigh(GH['mat'], GH['bmat'], eigvals_only=True)
+
+        # general hermitian problem with hermitian M
+        GHc = DictWithRepr("gen-hermitian-Mc")
+        GHc['mat'] = Ac
+        GHc['bmat'] = Mc
+        GHc['v0'] = v0
+        GHc['eval'] = eigh(GHc['mat'], GHc['bmat'], eigvals_only=True)
+
+        self.real_test_cases = [SS, GS]
+        self.complex_test_cases = [SH, GH, GHc]
+
+
+class NonSymmetricParams:
+    def __init__(self):
+        self.eigs = eigs
+        self.which = ['LM', 'LR', 'LI']  # , 'SM', 'LR', 'SR', 'LI', 'SI']
+        self.mattypes = [csr_array, aslinearoperator, np.asarray]
+        self.sigmas_OPparts = {None: [None],
+                               0.1: ['r'],
+                               0.1 + 0.1j: ['r', 'i']}
+
+        # generate matrices
+        # these should all be float32 so that the eigenvalues
+        # are the same in float32 and float64
+        N = 6
+        rng = np.random.RandomState(2300)
+        Ar = generate_matrix(N, rng=rng).astype('f').astype('d')
+        M = generate_matrix(N, hermitian=True,
+                            pos_definite=True, rng=rng).astype('f').astype('d')
+        Ac = generate_matrix(N, complex_=True, rng=rng).astype('F').astype('D')
+        v0 = rng.random(N)
+
+        # standard real nonsymmetric problem
+        SNR = DictWithRepr("std-real-nonsym")
+        SNR['mat'] = Ar
+        SNR['v0'] = v0
+        SNR['eval'] = eig(SNR['mat'], left=False, right=False)
+
+        # general real nonsymmetric problem
+        GNR = DictWithRepr("gen-real-nonsym")
+        GNR['mat'] = Ar
+        GNR['bmat'] = M
+        GNR['v0'] = v0
+        GNR['eval'] = eig(GNR['mat'], GNR['bmat'], left=False, right=False)
+
+        # standard complex nonsymmetric problem
+        SNC = DictWithRepr("std-cmplx-nonsym")
+        SNC['mat'] = Ac
+        SNC['v0'] = v0
+        SNC['eval'] = eig(SNC['mat'], left=False, right=False)
+
+        # general complex nonsymmetric problem
+        GNC = DictWithRepr("gen-cmplx-nonsym")
+        GNC['mat'] = Ac
+        GNC['bmat'] = M
+        GNC['v0'] = v0
+        GNC['eval'] = eig(GNC['mat'], GNC['bmat'], left=False, right=False)
+
+        self.real_test_cases = [SNR, GNR]
+        self.complex_test_cases = [SNC, GNC]
+
+
+@pytest.mark.iterations(1)
+@pytest.mark.thread_unsafe
+def test_symmetric_modes(num_parallel_threads):
+    assert num_parallel_threads == 1
+    params = SymmetricParams()
+    k = 2
+    symmetric = True
+    for D in params.real_test_cases:
+        for typ in 'fd':
+            for which in params.which:
+                for mattype in params.mattypes:
+                    for (sigma, modes) in params.sigmas_modes.items():
+                        for mode in modes:
+                            eval_evec(symmetric, D, typ, k, which,
+                                      None, sigma, mattype, None, mode)
+
+
+def test_hermitian_modes():
+    params = SymmetricParams()
+    k = 2
+    symmetric = True
+    for D in params.complex_test_cases:
+        for typ in 'FD':
+            for which in params.which:
+                if which == 'BE':
+                    continue  # BE invalid for complex
+                for mattype in params.mattypes:
+                    for sigma in params.sigmas_modes:
+                        eval_evec(symmetric, D, typ, k, which,
+                                  None, sigma, mattype)
+
+
+def test_symmetric_starting_vector():
+    params = SymmetricParams()
+    symmetric = True
+    for k in [1, 2, 3, 4, 5]:
+        for D in params.real_test_cases:
+            for typ in 'fd':
+                v0 = random.rand(len(D['v0'])).astype(typ)
+                eval_evec(symmetric, D, typ, k, 'LM', v0)
+
+
+def test_symmetric_no_convergence():
+    rng = np.random.RandomState(1234)
+    m = generate_matrix(30, hermitian=True, pos_definite=True, rng=rng)
+    tol, rtol, atol = _get_test_tolerance('d')
+    try:
+        w, v = eigsh(m, 4, which='LM', v0=m[:, 0], maxiter=5, tol=tol, ncv=9)
+        raise AssertionError("Spurious no-error exit")
+    except ArpackNoConvergence as err:
+        k = len(err.eigenvalues)
+        if k <= 0:
+            raise AssertionError("Spurious no-eigenvalues-found case") from err
+        w, v = err.eigenvalues, err.eigenvectors
+        assert_allclose(dot(m, v), w * v, rtol=rtol, atol=atol)
+
+
+def test_real_nonsymmetric_modes():
+    params = NonSymmetricParams()
+    k = 2
+    symmetric = False
+    for D in params.real_test_cases:
+        for typ in 'fd':
+            for which in params.which:
+                for mattype in params.mattypes:
+                    for sigma, OPparts in params.sigmas_OPparts.items():
+                        for OPpart in OPparts:
+                            eval_evec(symmetric, D, typ, k, which,
+                                      None, sigma, mattype, OPpart)
+
+
+def test_complex_nonsymmetric_modes():
+    params = NonSymmetricParams()
+    k = 2
+    symmetric = False
+    for D in params.complex_test_cases:
+        for typ in 'DF':
+            for which in params.which:
+                for mattype in params.mattypes:
+                    for sigma in params.sigmas_OPparts:
+                        eval_evec(symmetric, D, typ, k, which,
+                                  None, sigma, mattype)
+
+
+def test_standard_nonsymmetric_starting_vector():
+    params = NonSymmetricParams()
+    sigma = None
+    symmetric = False
+    for k in [1, 2, 3, 4]:
+        for d in params.complex_test_cases:
+            for typ in 'FD':
+                A = d['mat']
+                n = A.shape[0]
+                v0 = random.rand(n).astype(typ)
+                eval_evec(symmetric, d, typ, k, "LM", v0, sigma)
+
+
+def test_general_nonsymmetric_starting_vector():
+    params = NonSymmetricParams()
+    sigma = None
+    symmetric = False
+    for k in [1, 2, 3, 4]:
+        for d in params.complex_test_cases:
+            for typ in 'FD':
+                A = d['mat']
+                n = A.shape[0]
+                v0 = random.rand(n).astype(typ)
+                eval_evec(symmetric, d, typ, k, "LM", v0, sigma)
+
+
+def test_standard_nonsymmetric_no_convergence():
+    rng = np.random.RandomState(1234)
+    m = generate_matrix(30, complex_=True, rng=rng)
+    tol, rtol, atol = _get_test_tolerance('d')
+    try:
+        w, v = eigs(m, 4, which='LM', v0=m[:, 0], maxiter=5, tol=tol)
+        raise AssertionError("Spurious no-error exit")
+    except ArpackNoConvergence as err:
+        k = len(err.eigenvalues)
+        if k <= 0:
+            raise AssertionError("Spurious no-eigenvalues-found case") from err
+        w, v = err.eigenvalues, err.eigenvectors
+        for ww, vv in zip(w, v.T):
+            assert_allclose(dot(m, vv), ww * vv, rtol=rtol, atol=atol)
+
+
+def test_eigen_bad_shapes():
+    # A is not square.
+    A = csc_array(np.zeros((2, 3)))
+    assert_raises(ValueError, eigs, A)
+
+
+def test_eigen_bad_kwargs():
+    # Test eigen on wrong keyword argument
+    A = csc_array(np.zeros((8, 8)))
+    assert_raises(ValueError, eigs, A, which='XX')
+
+
+def test_ticket_1459_arpack_crash():
+    for dtype in [np.float32, np.float64]:
+        # This test does not seem to catch the issue for float32,
+        # but we made the same fix there, just to be sure
+
+        N = 6
+        k = 2
+
+        np.random.seed(2301)
+        A = np.random.random((N, N)).astype(dtype)
+        v0 = np.array([-0.71063568258907849895, -0.83185111795729227424,
+                       -0.34365925382227402451, 0.46122533684552280420,
+                       -0.58001341115969040629, -0.78844877570084292984e-01],
+                      dtype=dtype)
+
+        # Should not crash:
+        evals, evecs = eigs(A, k, v0=v0)
+
+
+@pytest.mark.skipif(IS_PYPY, reason="Test not meaningful on PyPy")
+def test_linearoperator_deallocation():
+    # Check that the linear operators used by the Arpack wrappers are
+    # deallocatable by reference counting -- they are big objects, so
+    # Python's cyclic GC may not collect them fast enough before
+    # running out of memory if eigs/eigsh are called in a tight loop.
+
+    M_d = np.eye(10)
+    M_s = csc_array(M_d)
+    M_o = aslinearoperator(M_d)
+
+    with assert_deallocated(lambda: arpack.SpLuInv(M_s)):
+        pass
+    with assert_deallocated(lambda: arpack.LuInv(M_d)):
+        pass
+    with assert_deallocated(lambda: arpack.IterInv(M_s)):
+        pass
+    with assert_deallocated(lambda: arpack.IterOpInv(M_o, None, 0.3)):
+        pass
+    with assert_deallocated(lambda: arpack.IterOpInv(M_o, M_o, 0.3)):
+        pass
+
+
+@pytest.mark.thread_unsafe
+def test_parallel_threads():
+    results = []
+    v0 = np.random.rand(50)
+
+    def worker():
+        x = diags_array([1, -2, 1], offsets=[-1, 0, 1], shape=(50, 50))
+        w, v = eigs(x, k=3, v0=v0)
+        results.append(w)
+
+        w, v = eigsh(x, k=3, v0=v0)
+        results.append(w)
+
+    threads = [threading.Thread(target=worker) for k in range(10)]
+    for t in threads:
+        t.start()
+    for t in threads:
+        t.join()
+
+    worker()
+
+    for r in results:
+        assert_allclose(r, results[-1])
+
+
+def test_reentering():
+    # Just some linear operator that calls eigs recursively
+    def A_matvec(x):
+        x = diags_array([1, -2, 1], offsets=[-1, 0, 1], shape=(50, 50))
+        w, v = eigs(x, k=1)
+        return v / w[0]
+    A = LinearOperator(matvec=A_matvec, dtype=float, shape=(50, 50))
+
+    # The Fortran code is not reentrant, so this fails (gracefully, not crashing)
+    assert_raises(RuntimeError, eigs, A, k=1)
+    assert_raises(RuntimeError, eigsh, A, k=1)
+
+
+def test_regression_arpackng_1315():
+    # Check that issue arpack-ng/#1315 is not present.
+    # Adapted from arpack-ng/TESTS/bug_1315_single.c
+    # If this fails, then the installed ARPACK library is faulty.
+
+    for dtype in [np.float32, np.float64]:
+        np.random.seed(1234)
+
+        w0 = np.arange(1, 1000+1).astype(dtype)
+        A = diags_array([w0], offsets=[0], shape=(1000, 1000))
+
+        v0 = np.random.rand(1000).astype(dtype)
+        w, v = eigs(A, k=9, ncv=2*9+1, which="LM", v0=v0)
+
+        assert_allclose(np.sort(w), np.sort(w0[-9:]),
+                        rtol=1e-4)
+
+
+def test_eigs_for_k_greater():
+    # Test eigs() for k beyond limits.
+    rng = np.random.RandomState(1234)
+    A_sparse = diags_array([1, -2, 1], offsets=[-1, 0, 1], shape=(4, 4))  # sparse
+    A = generate_matrix(4, sparse=False, rng=rng)
+    M_dense = rng.random((4, 4))
+    M_sparse = generate_matrix(4, sparse=True, rng=rng)
+    M_linop = aslinearoperator(M_dense)
+    eig_tuple1 = eig(A, b=M_dense)
+    eig_tuple2 = eig(A, b=M_sparse)
+
+    with suppress_warnings() as sup:
+        sup.filter(RuntimeWarning)
+
+        assert_equal(eigs(A, M=M_dense, k=3), eig_tuple1)
+        assert_equal(eigs(A, M=M_dense, k=4), eig_tuple1)
+        assert_equal(eigs(A, M=M_dense, k=5), eig_tuple1)
+        assert_equal(eigs(A, M=M_sparse, k=5), eig_tuple2)
+
+        # M as LinearOperator
+        assert_raises(TypeError, eigs, A, M=M_linop, k=3)
+
+        # Test 'A' for different types
+        assert_raises(TypeError, eigs, aslinearoperator(A), k=3)
+        assert_raises(TypeError, eigs, A_sparse, k=3)
+
+
+def test_eigsh_for_k_greater():
+    # Test eigsh() for k beyond limits.
+    rng = np.random.RandomState(1234)
+    A_sparse = diags_array([1, -2, 1], offsets=[-1, 0, 1], shape=(4, 4))  # sparse
+    A = generate_matrix(4, sparse=False, rng=rng)
+    M_dense = generate_matrix_symmetric(4, pos_definite=True, rng=rng)
+    M_sparse = generate_matrix_symmetric(
+        4, pos_definite=True, sparse=True, rng=rng)
+    M_linop = aslinearoperator(M_dense)
+    eig_tuple1 = eigh(A, b=M_dense)
+    eig_tuple2 = eigh(A, b=M_sparse)
+
+    with suppress_warnings() as sup:
+        sup.filter(RuntimeWarning)
+
+        assert_equal(eigsh(A, M=M_dense, k=4), eig_tuple1)
+        assert_equal(eigsh(A, M=M_dense, k=5), eig_tuple1)
+        assert_equal(eigsh(A, M=M_sparse, k=5), eig_tuple2)
+
+        # M as LinearOperator
+        assert_raises(TypeError, eigsh, A, M=M_linop, k=4)
+
+        # Test 'A' for different types
+        assert_raises(TypeError, eigsh, aslinearoperator(A), k=4)
+        assert_raises(TypeError, eigsh, A_sparse, M=M_dense, k=4)
+
+
+def test_real_eigs_real_k_subset():
+    rng = np.random.default_rng(2)
+
+    n = 10
+    A = random_array(shape=(n, n), density=0.5, rng=rng)
+    A.data *= 2
+    A.data -= 1
+    A += A.T  # make symmetric to test real eigenvalues
+
+    v0 = np.ones(n)
+
+    whichs = ['LM', 'SM', 'LR', 'SR', 'LI', 'SI']
+    dtypes = [np.float32, np.float64]
+
+    for which, sigma, dtype in itertools.product(whichs, [None, 0, 5], dtypes):
+        prev_w = np.array([], dtype=dtype)
+        eps = np.finfo(dtype).eps
+        for k in range(1, 9):
+            w, z = eigs(A.astype(dtype), k=k, which=which, sigma=sigma,
+                        v0=v0.astype(dtype), tol=0)
+            assert_allclose(np.linalg.norm(A.dot(z) - z * w), 0, atol=np.sqrt(eps))
+
+            # Check that the set of eigenvalues for `k` is a subset of that for `k+1`
+            dist = abs(prev_w[:,None] - w).min(axis=1)
+            assert_allclose(dist, 0, atol=np.sqrt(eps))
+
+            prev_w = w

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/lobpcg/__init__.py

@@ -0,0 +1,16 @@
+"""
+Locally Optimal Block Preconditioned Conjugate Gradient Method (LOBPCG)
+
+LOBPCG is a preconditioned eigensolver for large symmetric positive definite
+(SPD) generalized eigenproblems.
+
+Call the function lobpcg - see help for lobpcg.lobpcg.
+
+"""
+from .lobpcg import *
+
+__all__ = [s for s in dir() if not s.startswith('_')]
+
+from scipy._lib._testutils import PytestTester
+test = PytestTester(__name__)
+del PytestTester

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/lobpcg/lobpcg.py

@@ -0,0 +1,1110 @@
+"""
+Locally Optimal Block Preconditioned Conjugate Gradient Method (LOBPCG).
+
+References
+----------
+.. [1] A. V. Knyazev (2001),
+       Toward the Optimal Preconditioned Eigensolver: Locally Optimal
+       Block Preconditioned Conjugate Gradient Method.
+       SIAM Journal on Scientific Computing 23, no. 2,
+       pp. 517-541. :doi:`10.1137/S1064827500366124`
+
+.. [2] A. V. Knyazev, I. Lashuk, M. E. Argentati, and E. Ovchinnikov (2007),
+       Block Locally Optimal Preconditioned Eigenvalue Xolvers (BLOPEX)
+       in hypre and PETSc.  :arxiv:`0705.2626`
+
+.. [3] A. V. Knyazev's C and MATLAB implementations:
+       https://github.com/lobpcg/blopex
+"""
+
+import warnings
+import numpy as np
+from scipy.linalg import (inv, eigh, cho_factor, cho_solve,
+                          cholesky, LinAlgError)
+from scipy.sparse.linalg import LinearOperator
+from scipy.sparse import issparse
+
+__all__ = ["lobpcg"]
+
+
+def _report_nonhermitian(M, name):
+    """
+    Report if `M` is not a Hermitian matrix given its type.
+    """
+    from scipy.linalg import norm
+
+    md = M - M.T.conj()
+    nmd = norm(md, 1)
+    tol = 10 * np.finfo(M.dtype).eps
+    tol = max(tol, tol * norm(M, 1))
+    if nmd > tol:
+        warnings.warn(
+              f"Matrix {name} of the type {M.dtype} is not Hermitian: "
+              f"condition: {nmd} < {tol} fails.",
+              UserWarning, stacklevel=4
+         )
+
+def _as2d(ar):
+    """
+    If the input array is 2D return it, if it is 1D, append a dimension,
+    making it a column vector.
+    """
+    if ar.ndim == 2:
+        return ar
+    else:  # Assume 1!
+        aux = np.asarray(ar)
+        aux.shape = (ar.shape[0], 1)
+        return aux
+
+
+def _makeMatMat(m):
+    if m is None:
+        return None
+    elif callable(m):
+        return lambda v: m(v)
+    else:
+        return lambda v: m @ v
+
+
+def _matmul_inplace(x, y, verbosityLevel=0):
+    """Perform 'np.matmul' in-place if possible.
+
+    If some sufficient conditions for inplace matmul are met, do so.
+    Otherwise try inplace update and fall back to overwrite if that fails.
+    """
+    if x.flags["CARRAY"] and x.shape[1] == y.shape[1] and x.dtype == y.dtype:
+        # conditions where we can guarantee that inplace updates will work;
+        # i.e. x is not a view/slice, x & y have compatible dtypes, and the
+        # shape of the result of x @ y matches the shape of x.
+        np.matmul(x, y, out=x)
+    else:
+        # ideally, we'd have an exhaustive list of conditions above when
+        # inplace updates are possible; since we don't, we opportunistically
+        # try if it works, and fall back to overwriting if necessary
+        try:
+            np.matmul(x, y, out=x)
+        except Exception:
+            if verbosityLevel:
+                warnings.warn(
+                    "Inplace update of x = x @ y failed, "
+                    "x needs to be overwritten.",
+                    UserWarning, stacklevel=3
+                )
+            x = x @ y
+    return x
+
+
+def _applyConstraints(blockVectorV, factYBY, blockVectorBY, blockVectorY):
+    """Changes blockVectorV in-place."""
+    YBV = blockVectorBY.T.conj() @ blockVectorV
+    tmp = cho_solve(factYBY, YBV)
+    blockVectorV -= blockVectorY @ tmp
+
+
+def _b_orthonormalize(B, blockVectorV, blockVectorBV=None,
+                      verbosityLevel=0):
+    """in-place B-orthonormalize the given block vector using Cholesky."""
+    if blockVectorBV is None:
+        if B is None:
+            blockVectorBV = blockVectorV
+        else:
+            try:
+                blockVectorBV = B(blockVectorV)
+            except Exception as e:
+                if verbosityLevel:
+                    warnings.warn(
+                        f"Secondary MatMul call failed with error\n"
+                        f"{e}\n",
+                        UserWarning, stacklevel=3
+                    )
+                    return None, None, None
+            if blockVectorBV.shape != blockVectorV.shape:
+                raise ValueError(
+                    f"The shape {blockVectorV.shape} "
+                    f"of the orthogonalized matrix not preserved\n"
+                    f"and changed to {blockVectorBV.shape} "
+                    f"after multiplying by the secondary matrix.\n"
+                )
+
+    VBV = blockVectorV.T.conj() @ blockVectorBV
+    try:
+        # VBV is a Cholesky factor from now on...
+        VBV = cholesky(VBV, overwrite_a=True)
+        VBV = inv(VBV, overwrite_a=True)
+        blockVectorV = _matmul_inplace(
+            blockVectorV, VBV,
+            verbosityLevel=verbosityLevel
+        )
+        if B is not None:
+            blockVectorBV = _matmul_inplace(
+                blockVectorBV, VBV,
+                verbosityLevel=verbosityLevel
+            )
+        return blockVectorV, blockVectorBV, VBV
+    except LinAlgError:
+        if verbosityLevel:
+            warnings.warn(
+                "Cholesky has failed.",
+                UserWarning, stacklevel=3
+            )
+        return None, None, None
+
+
+def _get_indx(_lambda, num, largest):
+    """Get `num` indices into `_lambda` depending on `largest` option."""
+    ii = np.argsort(_lambda)
+    if largest:
+        ii = ii[:-num - 1:-1]
+    else:
+        ii = ii[:num]
+
+    return ii
+
+
+def _handle_gramA_gramB_verbosity(gramA, gramB, verbosityLevel):
+    if verbosityLevel:
+        _report_nonhermitian(gramA, "gramA")
+        _report_nonhermitian(gramB, "gramB")
+
+
+def lobpcg(
+    A,
+    X,
+    B=None,
+    M=None,
+    Y=None,
+    tol=None,
+    maxiter=None,
+    largest=True,
+    verbosityLevel=0,
+    retLambdaHistory=False,
+    retResidualNormsHistory=False,
+    restartControl=20,
+):
+    """Locally Optimal Block Preconditioned Conjugate Gradient Method (LOBPCG).
+
+    LOBPCG is a preconditioned eigensolver for large real symmetric and complex
+    Hermitian definite generalized eigenproblems.
+
+    Parameters
+    ----------
+    A : {sparse matrix, ndarray, LinearOperator, callable object}
+        The Hermitian linear operator of the problem, usually given by a
+        sparse matrix.  Often called the "stiffness matrix".
+    X : ndarray, float32 or float64
+        Initial approximation to the ``k`` eigenvectors (non-sparse).
+        If `A` has ``shape=(n,n)`` then `X` must have ``shape=(n,k)``.
+    B : {sparse matrix, ndarray, LinearOperator, callable object}
+        Optional. By default ``B = None``, which is equivalent to identity.
+        The right hand side operator in a generalized eigenproblem if present.
+        Often called the "mass matrix". Must be Hermitian positive definite.
+    M : {sparse matrix, ndarray, LinearOperator, callable object}
+        Optional. By default ``M = None``, which is equivalent to identity.
+        Preconditioner aiming to accelerate convergence.
+    Y : ndarray, float32 or float64, default: None
+        An ``n-by-sizeY`` ndarray of constraints with ``sizeY < n``.
+        The iterations will be performed in the ``B``-orthogonal complement
+        of the column-space of `Y`. `Y` must be full rank if present.
+    tol : scalar, optional
+        The default is ``tol=n*sqrt(eps)``.
+        Solver tolerance for the stopping criterion.
+    maxiter : int, default: 20
+        Maximum number of iterations.
+    largest : bool, default: True
+        When True, solve for the largest eigenvalues, otherwise the smallest.
+    verbosityLevel : int, optional
+        By default ``verbosityLevel=0`` no output.
+        Controls the solver standard/screen output.
+    retLambdaHistory : bool, default: False
+        Whether to return iterative eigenvalue history.
+    retResidualNormsHistory : bool, default: False
+        Whether to return iterative history of residual norms.
+    restartControl : int, optional.
+        Iterations restart if the residuals jump ``2**restartControl`` times
+        compared to the smallest recorded in ``retResidualNormsHistory``.
+        The default is ``restartControl=20``, making the restarts rare for
+        backward compatibility.
+
+    Returns
+    -------
+    lambda : ndarray of the shape ``(k, )``.
+        Array of ``k`` approximate eigenvalues.
+    v : ndarray of the same shape as ``X.shape``.
+        An array of ``k`` approximate eigenvectors.
+    lambdaHistory : ndarray, optional.
+        The eigenvalue history, if `retLambdaHistory` is ``True``.
+    ResidualNormsHistory : ndarray, optional.
+        The history of residual norms, if `retResidualNormsHistory`
+        is ``True``.
+
+    Notes
+    -----
+    The iterative loop runs ``maxit=maxiter`` (20 if ``maxit=None``)
+    iterations at most and finishes earlier if the tolerance is met.
+    Breaking backward compatibility with the previous version, LOBPCG
+    now returns the block of iterative vectors with the best accuracy rather
+    than the last one iterated, as a cure for possible divergence.
+
+    If ``X.dtype == np.float32`` and user-provided operations/multiplications
+    by `A`, `B`, and `M` all preserve the ``np.float32`` data type,
+    all the calculations and the output are in ``np.float32``.
+
+    The size of the iteration history output equals to the number of the best
+    (limited by `maxit`) iterations plus 3: initial, final, and postprocessing.
+
+    If both `retLambdaHistory` and `retResidualNormsHistory` are ``True``,
+    the return tuple has the following format
+    ``(lambda, V, lambda history, residual norms history)``.
+
+    In the following ``n`` denotes the matrix size and ``k`` the number
+    of required eigenvalues (smallest or largest).
+
+    The LOBPCG code internally solves eigenproblems of the size ``3k`` on every
+    iteration by calling the dense eigensolver `eigh`, so if ``k`` is not
+    small enough compared to ``n``, it makes no sense to call the LOBPCG code.
+    Moreover, if one calls the LOBPCG algorithm for ``5k > n``, it would likely
+    break internally, so the code calls the standard function `eigh` instead.
+    It is not that ``n`` should be large for the LOBPCG to work, but rather the
+    ratio ``n / k`` should be large. It you call LOBPCG with ``k=1``
+    and ``n=10``, it works though ``n`` is small. The method is intended
+    for extremely large ``n / k``.
+
+    The convergence speed depends basically on three factors:
+
+    1. Quality of the initial approximations `X` to the seeking eigenvectors.
+       Randomly distributed around the origin vectors work well if no better
+       choice is known.
+
+    2. Relative separation of the desired eigenvalues from the rest
+       of the eigenvalues. One can vary ``k`` to improve the separation.
+
+    3. Proper preconditioning to shrink the spectral spread.
+       For example, a rod vibration test problem (under tests
+       directory) is ill-conditioned for large ``n``, so convergence will be
+       slow, unless efficient preconditioning is used. For this specific
+       problem, a good simple preconditioner function would be a linear solve
+       for `A`, which is easy to code since `A` is tridiagonal.
+
+    References
+    ----------
+    .. [1] A. V. Knyazev (2001),
+           Toward the Optimal Preconditioned Eigensolver: Locally Optimal
+           Block Preconditioned Conjugate Gradient Method.
+           SIAM Journal on Scientific Computing 23, no. 2,
+           pp. 517-541. :doi:`10.1137/S1064827500366124`
+
+    .. [2] A. V. Knyazev, I. Lashuk, M. E. Argentati, and E. Ovchinnikov
+           (2007), Block Locally Optimal Preconditioned Eigenvalue Xolvers
+           (BLOPEX) in hypre and PETSc. :arxiv:`0705.2626`
+
+    .. [3] A. V. Knyazev's C and MATLAB implementations:
+           https://github.com/lobpcg/blopex
+
+    Examples
+    --------
+    Our first example is minimalistic - find the largest eigenvalue of
+    a diagonal matrix by solving the non-generalized eigenvalue problem
+    ``A x = lambda x`` without constraints or preconditioning.
+
+    >>> import numpy as np
+    >>> from scipy.sparse import spdiags
+    >>> from scipy.sparse.linalg import LinearOperator, aslinearoperator
+    >>> from scipy.sparse.linalg import lobpcg
+
+    The square matrix size is
+
+    >>> n = 100
+
+    and its diagonal entries are 1, ..., 100 defined by
+
+    >>> vals = np.arange(1, n + 1).astype(np.int16)
+
+    The first mandatory input parameter in this test is
+    the sparse diagonal matrix `A`
+    of the eigenvalue problem ``A x = lambda x`` to solve.
+
+    >>> A = spdiags(vals, 0, n, n)
+    >>> A = A.astype(np.int16)
+    >>> A.toarray()
+    array([[  1,   0,   0, ...,   0,   0,   0],
+           [  0,   2,   0, ...,   0,   0,   0],
+           [  0,   0,   3, ...,   0,   0,   0],
+           ...,
+           [  0,   0,   0, ...,  98,   0,   0],
+           [  0,   0,   0, ...,   0,  99,   0],
+           [  0,   0,   0, ...,   0,   0, 100]], shape=(100, 100), dtype=int16)
+
+    The second mandatory input parameter `X` is a 2D array with the
+    row dimension determining the number of requested eigenvalues.
+    `X` is an initial guess for targeted eigenvectors.
+    `X` must have linearly independent columns.
+    If no initial approximations available, randomly oriented vectors
+    commonly work best, e.g., with components normally distributed
+    around zero or uniformly distributed on the interval [-1 1].
+    Setting the initial approximations to dtype ``np.float32``
+    forces all iterative values to dtype ``np.float32`` speeding up
+    the run while still allowing accurate eigenvalue computations.
+
+    >>> k = 1
+    >>> rng = np.random.default_rng()
+    >>> X = rng.normal(size=(n, k))
+    >>> X = X.astype(np.float32)
+
+    >>> eigenvalues, _ = lobpcg(A, X, maxiter=60)
+    >>> eigenvalues
+    array([100.], dtype=float32)
+
+    `lobpcg` needs only access the matrix product with `A` rather
+    then the matrix itself. Since the matrix `A` is diagonal in
+    this example, one can write a function of the matrix product
+    ``A @ X`` using the diagonal values ``vals`` only, e.g., by
+    element-wise multiplication with broadcasting in the lambda-function
+
+    >>> A_lambda = lambda X: vals[:, np.newaxis] * X
+
+    or the regular function
+
+    >>> def A_matmat(X):
+    ...     return vals[:, np.newaxis] * X
+
+    and use the handle to one of these callables as an input
+
+    >>> eigenvalues, _ = lobpcg(A_lambda, X, maxiter=60)
+    >>> eigenvalues
+    array([100.], dtype=float32)
+    >>> eigenvalues, _ = lobpcg(A_matmat, X, maxiter=60)
+    >>> eigenvalues
+    array([100.], dtype=float32)
+
+    The traditional callable `LinearOperator` is no longer
+    necessary but still supported as the input to `lobpcg`.
+    Specifying ``matmat=A_matmat`` explicitly improves performance. 
+
+    >>> A_lo = LinearOperator((n, n), matvec=A_matmat, matmat=A_matmat, dtype=np.int16)
+    >>> eigenvalues, _ = lobpcg(A_lo, X, maxiter=80)
+    >>> eigenvalues
+    array([100.], dtype=float32)
+
+    The least efficient callable option is `aslinearoperator`:
+
+    >>> eigenvalues, _ = lobpcg(aslinearoperator(A), X, maxiter=80)
+    >>> eigenvalues
+    array([100.], dtype=float32)
+
+    We now switch to computing the three smallest eigenvalues specifying
+
+    >>> k = 3
+    >>> X = np.random.default_rng().normal(size=(n, k))
+
+    and ``largest=False`` parameter
+
+    >>> eigenvalues, _ = lobpcg(A, X, largest=False, maxiter=90)
+    >>> print(eigenvalues)  
+    [1. 2. 3.]
+
+    The next example illustrates computing 3 smallest eigenvalues of
+    the same matrix `A` given by the function handle ``A_matmat`` but
+    with constraints and preconditioning.
+
+    Constraints - an optional input parameter is a 2D array comprising
+    of column vectors that the eigenvectors must be orthogonal to
+
+    >>> Y = np.eye(n, 3)
+
+    The preconditioner acts as the inverse of `A` in this example, but
+    in the reduced precision ``np.float32`` even though the initial `X`
+    and thus all iterates and the output are in full ``np.float64``.
+
+    >>> inv_vals = 1./vals
+    >>> inv_vals = inv_vals.astype(np.float32)
+    >>> M = lambda X: inv_vals[:, np.newaxis] * X
+
+    Let us now solve the eigenvalue problem for the matrix `A` first
+    without preconditioning requesting 80 iterations
+
+    >>> eigenvalues, _ = lobpcg(A_matmat, X, Y=Y, largest=False, maxiter=80)
+    >>> eigenvalues
+    array([4., 5., 6.])
+    >>> eigenvalues.dtype
+    dtype('float64')
+
+    With preconditioning we need only 20 iterations from the same `X`
+
+    >>> eigenvalues, _ = lobpcg(A_matmat, X, Y=Y, M=M, largest=False, maxiter=20)
+    >>> eigenvalues
+    array([4., 5., 6.])
+
+    Note that the vectors passed in `Y` are the eigenvectors of the 3
+    smallest eigenvalues. The results returned above are orthogonal to those.
+
+    The primary matrix `A` may be indefinite, e.g., after shifting
+    ``vals`` by 50 from 1, ..., 100 to -49, ..., 50, we still can compute
+    the 3 smallest or largest eigenvalues.
+
+    >>> vals = vals - 50
+    >>> X = rng.normal(size=(n, k))
+    >>> eigenvalues, _ = lobpcg(A_matmat, X, largest=False, maxiter=99)
+    >>> eigenvalues
+    array([-49., -48., -47.])
+    >>> eigenvalues, _ = lobpcg(A_matmat, X, largest=True, maxiter=99)
+    >>> eigenvalues
+    array([50., 49., 48.])
+
+    """
+    blockVectorX = X
+    bestblockVectorX = blockVectorX
+    blockVectorY = Y
+    residualTolerance = tol
+    if maxiter is None:
+        maxiter = 20
+
+    bestIterationNumber = maxiter
+
+    sizeY = 0
+    if blockVectorY is not None:
+        if len(blockVectorY.shape) != 2:
+            warnings.warn(
+                f"Expected rank-2 array for argument Y, instead got "
+                f"{len(blockVectorY.shape)}, "
+                f"so ignore it and use no constraints.",
+                UserWarning, stacklevel=2
+            )
+            blockVectorY = None
+        else:
+            sizeY = blockVectorY.shape[1]
+
+    # Block size.
+    if blockVectorX is None:
+        raise ValueError("The mandatory initial matrix X cannot be None")
+    if len(blockVectorX.shape) != 2:
+        raise ValueError("expected rank-2 array for argument X")
+
+    n, sizeX = blockVectorX.shape
+
+    # Data type of iterates, determined by X, must be inexact
+    if not np.issubdtype(blockVectorX.dtype, np.inexact):
+        warnings.warn(
+            f"Data type for argument X is {blockVectorX.dtype}, "
+            f"which is not inexact, so casted to np.float32.",
+            UserWarning, stacklevel=2
+        )
+        blockVectorX = np.asarray(blockVectorX, dtype=np.float32)
+
+    if retLambdaHistory:
+        lambdaHistory = np.zeros((maxiter + 3, sizeX),
+                                 dtype=blockVectorX.dtype)
+    if retResidualNormsHistory:
+        residualNormsHistory = np.zeros((maxiter + 3, sizeX),
+                                        dtype=blockVectorX.dtype)
+
+    if verbosityLevel:
+        aux = "Solving "
+        if B is None:
+            aux += "standard"
+        else:
+            aux += "generalized"
+        aux += " eigenvalue problem with"
+        if M is None:
+            aux += "out"
+        aux += " preconditioning\n\n"
+        aux += "matrix size %d\n" % n
+        aux += "block size %d\n\n" % sizeX
+        if blockVectorY is None:
+            aux += "No constraints\n\n"
+        else:
+            if sizeY > 1:
+                aux += "%d constraints\n\n" % sizeY
+            else:
+                aux += "%d constraint\n\n" % sizeY
+        print(aux)
+
+    if (n - sizeY) < (5 * sizeX):
+        warnings.warn(
+            f"The problem size {n} minus the constraints size {sizeY} "
+            f"is too small relative to the block size {sizeX}. "
+            f"Using a dense eigensolver instead of LOBPCG iterations."
+            f"No output of the history of the iterations.",
+            UserWarning, stacklevel=2
+        )
+
+        sizeX = min(sizeX, n)
+
+        if blockVectorY is not None:
+            raise NotImplementedError(
+                "The dense eigensolver does not support constraints."
+            )
+
+        # Define the closed range of indices of eigenvalues to return.
+        if largest:
+            eigvals = (n - sizeX, n - 1)
+        else:
+            eigvals = (0, sizeX - 1)
+
+        try:
+            if isinstance(A, LinearOperator):
+                A = A(np.eye(n, dtype=int))
+            elif callable(A):
+                A = A(np.eye(n, dtype=int))
+                if A.shape != (n, n):
+                    raise ValueError(
+                        f"The shape {A.shape} of the primary matrix\n"
+                        f"defined by a callable object is wrong.\n"
+                    )
+            elif issparse(A):
+                A = A.toarray()
+            else:
+                A = np.asarray(A)
+        except Exception as e:
+            raise Exception(
+                f"Primary MatMul call failed with error\n"
+                f"{e}\n")
+
+        if B is not None:
+            try:
+                if isinstance(B, LinearOperator):
+                    B = B(np.eye(n, dtype=int))
+                elif callable(B):
+                    B = B(np.eye(n, dtype=int))
+                    if B.shape != (n, n):
+                        raise ValueError(
+                            f"The shape {B.shape} of the secondary matrix\n"
+                            f"defined by a callable object is wrong.\n"
+                        )
+                elif issparse(B):
+                    B = B.toarray()
+                else:
+                    B = np.asarray(B)
+            except Exception as e:
+                raise Exception(
+                    f"Secondary MatMul call failed with error\n"
+                    f"{e}\n")
+
+        try:
+            vals, vecs = eigh(A,
+                              B,
+                              subset_by_index=eigvals,
+                              check_finite=False)
+            if largest:
+                # Reverse order to be compatible with eigs() in 'LM' mode.
+                vals = vals[::-1]
+                vecs = vecs[:, ::-1]
+
+            return vals, vecs
+        except Exception as e:
+            raise Exception(
+                f"Dense eigensolver failed with error\n"
+                f"{e}\n"
+            )
+
+    if (residualTolerance is None) or (residualTolerance <= 0.0):
+        residualTolerance = np.sqrt(np.finfo(blockVectorX.dtype).eps) * n
+
+    A = _makeMatMat(A)
+    B = _makeMatMat(B)
+    M = _makeMatMat(M)
+
+    # Apply constraints to X.
+    if blockVectorY is not None:
+
+        if B is not None:
+            blockVectorBY = B(blockVectorY)
+            if blockVectorBY.shape != blockVectorY.shape:
+                raise ValueError(
+                    f"The shape {blockVectorY.shape} "
+                    f"of the constraint not preserved\n"
+                    f"and changed to {blockVectorBY.shape} "
+                    f"after multiplying by the secondary matrix.\n"
+                )
+        else:
+            blockVectorBY = blockVectorY
+
+        # gramYBY is a dense array.
+        gramYBY = blockVectorY.T.conj() @ blockVectorBY
+        try:
+            # gramYBY is a Cholesky factor from now on...
+            gramYBY = cho_factor(gramYBY, overwrite_a=True)
+        except LinAlgError as e:
+            raise ValueError("Linearly dependent constraints") from e
+
+        _applyConstraints(blockVectorX, gramYBY, blockVectorBY, blockVectorY)
+
+    ##
+    # B-orthonormalize X.
+    blockVectorX, blockVectorBX, _ = _b_orthonormalize(
+        B, blockVectorX, verbosityLevel=verbosityLevel)
+    if blockVectorX is None:
+        raise ValueError("Linearly dependent initial approximations")
+
+    ##
+    # Compute the initial Ritz vectors: solve the eigenproblem.
+    blockVectorAX = A(blockVectorX)
+    if blockVectorAX.shape != blockVectorX.shape:
+        raise ValueError(
+            f"The shape {blockVectorX.shape} "
+            f"of the initial approximations not preserved\n"
+            f"and changed to {blockVectorAX.shape} "
+            f"after multiplying by the primary matrix.\n"
+        )
+
+    gramXAX = blockVectorX.T.conj() @ blockVectorAX
+
+    _lambda, eigBlockVector = eigh(gramXAX, check_finite=False)
+    ii = _get_indx(_lambda, sizeX, largest)
+    _lambda = _lambda[ii]
+    if retLambdaHistory:
+        lambdaHistory[0, :] = _lambda
+
+    eigBlockVector = np.asarray(eigBlockVector[:, ii])
+    blockVectorX = _matmul_inplace(
+        blockVectorX, eigBlockVector,
+        verbosityLevel=verbosityLevel
+    )
+    blockVectorAX = _matmul_inplace(
+        blockVectorAX, eigBlockVector,
+        verbosityLevel=verbosityLevel
+    )
+    if B is not None:
+        blockVectorBX = _matmul_inplace(
+            blockVectorBX, eigBlockVector,
+            verbosityLevel=verbosityLevel
+        )
+
+    ##
+    # Active index set.
+    activeMask = np.ones((sizeX,), dtype=bool)
+
+    ##
+    # Main iteration loop.
+
+    blockVectorP = None  # set during iteration
+    blockVectorAP = None
+    blockVectorBP = None
+
+    smallestResidualNorm = np.abs(np.finfo(blockVectorX.dtype).max)
+
+    iterationNumber = -1
+    restart = True
+    forcedRestart = False
+    explicitGramFlag = False
+    while iterationNumber < maxiter:
+        iterationNumber += 1
+
+        if B is not None:
+            aux = blockVectorBX * _lambda[np.newaxis, :]
+        else:
+            aux = blockVectorX * _lambda[np.newaxis, :]
+
+        blockVectorR = blockVectorAX - aux
+
+        aux = np.sum(blockVectorR.conj() * blockVectorR, 0)
+        residualNorms = np.sqrt(np.abs(aux))
+        if retResidualNormsHistory:
+            residualNormsHistory[iterationNumber, :] = residualNorms
+        residualNorm = np.sum(np.abs(residualNorms)) / sizeX
+
+        if residualNorm < smallestResidualNorm:
+            smallestResidualNorm = residualNorm
+            bestIterationNumber = iterationNumber
+            bestblockVectorX = blockVectorX
+        elif residualNorm > 2**restartControl * smallestResidualNorm:
+            forcedRestart = True
+            blockVectorAX = A(blockVectorX)
+            if blockVectorAX.shape != blockVectorX.shape:
+                raise ValueError(
+                    f"The shape {blockVectorX.shape} "
+                    f"of the restarted iterate not preserved\n"
+                    f"and changed to {blockVectorAX.shape} "
+                    f"after multiplying by the primary matrix.\n"
+                )
+            if B is not None:
+                blockVectorBX = B(blockVectorX)
+                if blockVectorBX.shape != blockVectorX.shape:
+                    raise ValueError(
+                        f"The shape {blockVectorX.shape} "
+                        f"of the restarted iterate not preserved\n"
+                        f"and changed to {blockVectorBX.shape} "
+                        f"after multiplying by the secondary matrix.\n"
+                    )
+
+        ii = np.where(residualNorms > residualTolerance, True, False)
+        activeMask = activeMask & ii
+        currentBlockSize = activeMask.sum()
+
+        if verbosityLevel:
+            print(f"iteration {iterationNumber}")
+            print(f"current block size: {currentBlockSize}")
+            print(f"eigenvalue(s):\n{_lambda}")
+            print(f"residual norm(s):\n{residualNorms}")
+
+        if currentBlockSize == 0:
+            break
+
+        activeBlockVectorR = _as2d(blockVectorR[:, activeMask])
+
+        if iterationNumber > 0:
+            activeBlockVectorP = _as2d(blockVectorP[:, activeMask])
+            activeBlockVectorAP = _as2d(blockVectorAP[:, activeMask])
+            if B is not None:
+                activeBlockVectorBP = _as2d(blockVectorBP[:, activeMask])
+
+        if M is not None:
+            # Apply preconditioner T to the active residuals.
+            activeBlockVectorR = M(activeBlockVectorR)
+
+        ##
+        # Apply constraints to the preconditioned residuals.
+        if blockVectorY is not None:
+            _applyConstraints(activeBlockVectorR,
+                              gramYBY,
+                              blockVectorBY,
+                              blockVectorY)
+
+        ##
+        # B-orthogonalize the preconditioned residuals to X.
+        if B is not None:
+            activeBlockVectorR = activeBlockVectorR - (
+                blockVectorX @
+                (blockVectorBX.T.conj() @ activeBlockVectorR)
+            )
+        else:
+            activeBlockVectorR = activeBlockVectorR - (
+                blockVectorX @
+                (blockVectorX.T.conj() @ activeBlockVectorR)
+            )
+
+        ##
+        # B-orthonormalize the preconditioned residuals.
+        aux = _b_orthonormalize(
+            B, activeBlockVectorR, verbosityLevel=verbosityLevel)
+        activeBlockVectorR, activeBlockVectorBR, _ = aux
+
+        if activeBlockVectorR is None:
+            warnings.warn(
+                f"Failed at iteration {iterationNumber} with accuracies "
+                f"{residualNorms}\n not reaching the requested "
+                f"tolerance {residualTolerance}.",
+                UserWarning, stacklevel=2
+            )
+            break
+        activeBlockVectorAR = A(activeBlockVectorR)
+
+        if iterationNumber > 0:
+            if B is not None:
+                aux = _b_orthonormalize(
+                    B, activeBlockVectorP, activeBlockVectorBP,
+                    verbosityLevel=verbosityLevel
+                )
+                activeBlockVectorP, activeBlockVectorBP, invR = aux
+            else:
+                aux = _b_orthonormalize(B, activeBlockVectorP,
+                                        verbosityLevel=verbosityLevel)
+                activeBlockVectorP, _, invR = aux
+            # Function _b_orthonormalize returns None if Cholesky fails
+            if activeBlockVectorP is not None:
+                activeBlockVectorAP = _matmul_inplace(
+                    activeBlockVectorAP, invR,
+                    verbosityLevel=verbosityLevel
+                )
+                restart = forcedRestart
+            else:
+                restart = True
+
+        ##
+        # Perform the Rayleigh Ritz Procedure:
+        # Compute symmetric Gram matrices:
+
+        if activeBlockVectorAR.dtype == "float32":
+            myeps = 1
+        else:
+            myeps = np.sqrt(np.finfo(activeBlockVectorR.dtype).eps)
+
+        if residualNorms.max() > myeps and not explicitGramFlag:
+            explicitGramFlag = False
+        else:
+            # Once explicitGramFlag, forever explicitGramFlag.
+            explicitGramFlag = True
+
+        # Shared memory assignments to simplify the code
+        if B is None:
+            blockVectorBX = blockVectorX
+            activeBlockVectorBR = activeBlockVectorR
+            if not restart:
+                activeBlockVectorBP = activeBlockVectorP
+
+        # Common submatrices:
+        gramXAR = np.dot(blockVectorX.T.conj(), activeBlockVectorAR)
+        gramRAR = np.dot(activeBlockVectorR.T.conj(), activeBlockVectorAR)
+
+        gramDtype = activeBlockVectorAR.dtype
+        if explicitGramFlag:
+            gramRAR = (gramRAR + gramRAR.T.conj()) / 2
+            gramXAX = np.dot(blockVectorX.T.conj(), blockVectorAX)
+            gramXAX = (gramXAX + gramXAX.T.conj()) / 2
+            gramXBX = np.dot(blockVectorX.T.conj(), blockVectorBX)
+            gramRBR = np.dot(activeBlockVectorR.T.conj(), activeBlockVectorBR)
+            gramXBR = np.dot(blockVectorX.T.conj(), activeBlockVectorBR)
+        else:
+            gramXAX = np.diag(_lambda).astype(gramDtype)
+            gramXBX = np.eye(sizeX, dtype=gramDtype)
+            gramRBR = np.eye(currentBlockSize, dtype=gramDtype)
+            gramXBR = np.zeros((sizeX, currentBlockSize), dtype=gramDtype)
+
+        if not restart:
+            gramXAP = np.dot(blockVectorX.T.conj(), activeBlockVectorAP)
+            gramRAP = np.dot(activeBlockVectorR.T.conj(), activeBlockVectorAP)
+            gramPAP = np.dot(activeBlockVectorP.T.conj(), activeBlockVectorAP)
+            gramXBP = np.dot(blockVectorX.T.conj(), activeBlockVectorBP)
+            gramRBP = np.dot(activeBlockVectorR.T.conj(), activeBlockVectorBP)
+            if explicitGramFlag:
+                gramPAP = (gramPAP + gramPAP.T.conj()) / 2
+                gramPBP = np.dot(activeBlockVectorP.T.conj(),
+                                 activeBlockVectorBP)
+            else:
+                gramPBP = np.eye(currentBlockSize, dtype=gramDtype)
+
+            gramA = np.block(
+                [
+                    [gramXAX, gramXAR, gramXAP],
+                    [gramXAR.T.conj(), gramRAR, gramRAP],
+                    [gramXAP.T.conj(), gramRAP.T.conj(), gramPAP],
+                ]
+            )
+            gramB = np.block(
+                [
+                    [gramXBX, gramXBR, gramXBP],
+                    [gramXBR.T.conj(), gramRBR, gramRBP],
+                    [gramXBP.T.conj(), gramRBP.T.conj(), gramPBP],
+                ]
+            )
+
+            _handle_gramA_gramB_verbosity(gramA, gramB, verbosityLevel)
+
+            try:
+                _lambda, eigBlockVector = eigh(gramA,
+                                               gramB,
+                                               check_finite=False)
+            except LinAlgError as e:
+                # raise ValueError("eigh failed in lobpcg iterations") from e
+                if verbosityLevel:
+                    warnings.warn(
+                        f"eigh failed at iteration {iterationNumber} \n"
+                        f"with error {e} causing a restart.\n",
+                        UserWarning, stacklevel=2
+                    )
+                # try again after dropping the direction vectors P from RR
+                restart = True
+
+        if restart:
+            gramA = np.block([[gramXAX, gramXAR], [gramXAR.T.conj(), gramRAR]])
+            gramB = np.block([[gramXBX, gramXBR], [gramXBR.T.conj(), gramRBR]])
+
+            _handle_gramA_gramB_verbosity(gramA, gramB, verbosityLevel)
+
+            try:
+                _lambda, eigBlockVector = eigh(gramA,
+                                               gramB,
+                                               check_finite=False)
+            except LinAlgError as e:
+                # raise ValueError("eigh failed in lobpcg iterations") from e
+                warnings.warn(
+                    f"eigh failed at iteration {iterationNumber} with error\n"
+                    f"{e}\n",
+                    UserWarning, stacklevel=2
+                )
+                break
+
+        ii = _get_indx(_lambda, sizeX, largest)
+        _lambda = _lambda[ii]
+        eigBlockVector = eigBlockVector[:, ii]
+        if retLambdaHistory:
+            lambdaHistory[iterationNumber + 1, :] = _lambda
+
+        # Compute Ritz vectors.
+        if B is not None:
+            if not restart:
+                eigBlockVectorX = eigBlockVector[:sizeX]
+                eigBlockVectorR = eigBlockVector[sizeX:
+                                                 sizeX + currentBlockSize]
+                eigBlockVectorP = eigBlockVector[sizeX + currentBlockSize:]
+
+                pp = np.dot(activeBlockVectorR, eigBlockVectorR)
+                pp += np.dot(activeBlockVectorP, eigBlockVectorP)
+
+                app = np.dot(activeBlockVectorAR, eigBlockVectorR)
+                app += np.dot(activeBlockVectorAP, eigBlockVectorP)
+
+                bpp = np.dot(activeBlockVectorBR, eigBlockVectorR)
+                bpp += np.dot(activeBlockVectorBP, eigBlockVectorP)
+            else:
+                eigBlockVectorX = eigBlockVector[:sizeX]
+                eigBlockVectorR = eigBlockVector[sizeX:]
+
+                pp = np.dot(activeBlockVectorR, eigBlockVectorR)
+                app = np.dot(activeBlockVectorAR, eigBlockVectorR)
+                bpp = np.dot(activeBlockVectorBR, eigBlockVectorR)
+
+            blockVectorX = np.dot(blockVectorX, eigBlockVectorX) + pp
+            blockVectorAX = np.dot(blockVectorAX, eigBlockVectorX) + app
+            blockVectorBX = np.dot(blockVectorBX, eigBlockVectorX) + bpp
+
+            blockVectorP, blockVectorAP, blockVectorBP = pp, app, bpp
+
+        else:
+            if not restart:
+                eigBlockVectorX = eigBlockVector[:sizeX]
+                eigBlockVectorR = eigBlockVector[sizeX:
+                                                 sizeX + currentBlockSize]
+                eigBlockVectorP = eigBlockVector[sizeX + currentBlockSize:]
+
+                pp = np.dot(activeBlockVectorR, eigBlockVectorR)
+                pp += np.dot(activeBlockVectorP, eigBlockVectorP)
+
+                app = np.dot(activeBlockVectorAR, eigBlockVectorR)
+                app += np.dot(activeBlockVectorAP, eigBlockVectorP)
+            else:
+                eigBlockVectorX = eigBlockVector[:sizeX]
+                eigBlockVectorR = eigBlockVector[sizeX:]
+
+                pp = np.dot(activeBlockVectorR, eigBlockVectorR)
+                app = np.dot(activeBlockVectorAR, eigBlockVectorR)
+
+            blockVectorX = np.dot(blockVectorX, eigBlockVectorX) + pp
+            blockVectorAX = np.dot(blockVectorAX, eigBlockVectorX) + app
+
+            blockVectorP, blockVectorAP = pp, app
+
+    if B is not None:
+        aux = blockVectorBX * _lambda[np.newaxis, :]
+    else:
+        aux = blockVectorX * _lambda[np.newaxis, :]
+
+    blockVectorR = blockVectorAX - aux
+
+    aux = np.sum(blockVectorR.conj() * blockVectorR, 0)
+    residualNorms = np.sqrt(np.abs(aux))
+    # Use old lambda in case of early loop exit.
+    if retLambdaHistory:
+        lambdaHistory[iterationNumber + 1, :] = _lambda
+    if retResidualNormsHistory:
+        residualNormsHistory[iterationNumber + 1, :] = residualNorms
+    residualNorm = np.sum(np.abs(residualNorms)) / sizeX
+    if residualNorm < smallestResidualNorm:
+        smallestResidualNorm = residualNorm
+        bestIterationNumber = iterationNumber + 1
+        bestblockVectorX = blockVectorX
+
+    if np.max(np.abs(residualNorms)) > residualTolerance:
+        warnings.warn(
+            f"Exited at iteration {iterationNumber} with accuracies \n"
+            f"{residualNorms}\n"
+            f"not reaching the requested tolerance {residualTolerance}.\n"
+            f"Use iteration {bestIterationNumber} instead with accuracy \n"
+            f"{smallestResidualNorm}.\n",
+            UserWarning, stacklevel=2
+        )
+
+    if verbosityLevel:
+        print(f"Final iterative eigenvalue(s):\n{_lambda}")
+        print(f"Final iterative residual norm(s):\n{residualNorms}")
+
+    blockVectorX = bestblockVectorX
+    # Making eigenvectors "exactly" satisfy the blockVectorY constrains
+    if blockVectorY is not None:
+        _applyConstraints(blockVectorX,
+                          gramYBY,
+                          blockVectorBY,
+                          blockVectorY)
+
+    # Making eigenvectors "exactly" othonormalized by final "exact" RR
+    blockVectorAX = A(blockVectorX)
+    if blockVectorAX.shape != blockVectorX.shape:
+        raise ValueError(
+            f"The shape {blockVectorX.shape} "
+            f"of the postprocessing iterate not preserved\n"
+            f"and changed to {blockVectorAX.shape} "
+            f"after multiplying by the primary matrix.\n"
+        )
+    gramXAX = np.dot(blockVectorX.T.conj(), blockVectorAX)
+
+    blockVectorBX = blockVectorX
+    if B is not None:
+        blockVectorBX = B(blockVectorX)
+        if blockVectorBX.shape != blockVectorX.shape:
+            raise ValueError(
+                f"The shape {blockVectorX.shape} "
+                f"of the postprocessing iterate not preserved\n"
+                f"and changed to {blockVectorBX.shape} "
+                f"after multiplying by the secondary matrix.\n"
+            )
+
+    gramXBX = np.dot(blockVectorX.T.conj(), blockVectorBX)
+    _handle_gramA_gramB_verbosity(gramXAX, gramXBX, verbosityLevel)
+    gramXAX = (gramXAX + gramXAX.T.conj()) / 2
+    gramXBX = (gramXBX + gramXBX.T.conj()) / 2
+    try:
+        _lambda, eigBlockVector = eigh(gramXAX,
+                                       gramXBX,
+                                       check_finite=False)
+    except LinAlgError as e:
+        raise ValueError("eigh has failed in lobpcg postprocessing") from e
+
+    ii = _get_indx(_lambda, sizeX, largest)
+    _lambda = _lambda[ii]
+    eigBlockVector = np.asarray(eigBlockVector[:, ii])
+
+    blockVectorX = np.dot(blockVectorX, eigBlockVector)
+    blockVectorAX = np.dot(blockVectorAX, eigBlockVector)
+
+    if B is not None:
+        blockVectorBX = np.dot(blockVectorBX, eigBlockVector)
+        aux = blockVectorBX * _lambda[np.newaxis, :]
+    else:
+        aux = blockVectorX * _lambda[np.newaxis, :]
+
+    blockVectorR = blockVectorAX - aux
+
+    aux = np.sum(blockVectorR.conj() * blockVectorR, 0)
+    residualNorms = np.sqrt(np.abs(aux))
+
+    if retLambdaHistory:
+        lambdaHistory[bestIterationNumber + 1, :] = _lambda
+    if retResidualNormsHistory:
+        residualNormsHistory[bestIterationNumber + 1, :] = residualNorms
+
+    if retLambdaHistory:
+        lambdaHistory = lambdaHistory[
+            : bestIterationNumber + 2, :]
+    if retResidualNormsHistory:
+        residualNormsHistory = residualNormsHistory[
+            : bestIterationNumber + 2, :]
+
+    if np.max(np.abs(residualNorms)) > residualTolerance:
+        warnings.warn(
+            f"Exited postprocessing with accuracies \n"
+            f"{residualNorms}\n"
+            f"not reaching the requested tolerance {residualTolerance}.",
+            UserWarning, stacklevel=2
+        )
+
+    if verbosityLevel:
+        print(f"Final postprocessing eigenvalue(s):\n{_lambda}")
+        print(f"Final residual norm(s):\n{residualNorms}")
+
+    if retLambdaHistory:
+        lambdaHistory = np.vsplit(lambdaHistory, np.shape(lambdaHistory)[0])
+        lambdaHistory = [np.squeeze(i) for i in lambdaHistory]
+    if retResidualNormsHistory:
+        residualNormsHistory = np.vsplit(residualNormsHistory,
+                                         np.shape(residualNormsHistory)[0])
+        residualNormsHistory = [np.squeeze(i) for i in residualNormsHistory]
+
+    if retLambdaHistory:
+        if retResidualNormsHistory:
+            return _lambda, blockVectorX, lambdaHistory, residualNormsHistory
+        else:
+            return _lambda, blockVectorX, lambdaHistory
+    else:
+        if retResidualNormsHistory:
+            return _lambda, blockVectorX, residualNormsHistory
+        else:
+            return _lambda, blockVectorX

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py

@@ -0,0 +1,725 @@
+""" Test functions for the sparse.linalg._eigen.lobpcg module
+"""
+
+import itertools
+import platform
+import sys
+import pytest
+import numpy as np
+from numpy import ones, r_, diag
+from numpy.testing import (assert_almost_equal, assert_equal,
+                           assert_allclose, assert_array_less)
+
+from scipy import sparse
+from scipy.linalg import (eigh, toeplitz,
+                          cholesky_banded, cho_solve_banded)
+from scipy.sparse import dia_array, eye_array, csr_array
+from scipy.sparse.linalg import eigsh, LinearOperator
+from scipy.sparse.linalg._eigen.lobpcg import lobpcg
+from scipy.sparse.linalg._eigen.lobpcg.lobpcg import _b_orthonormalize
+from scipy._lib._util import np_long, np_ulong
+from scipy.sparse.linalg._special_sparse_arrays import (Sakurai,
+                                                        MikotaPair)
+
+_IS_32BIT = (sys.maxsize < 2**32)
+
+INT_DTYPES = (np.intc, np_long, np.longlong, np.uintc, np_ulong, np.ulonglong)
+# np.half is unsupported on many test systems so excluded
+REAL_DTYPES = (np.float32, np.float64, np.longdouble)
+COMPLEX_DTYPES = (np.complex64, np.complex128, np.clongdouble)
+INEXACTDTYPES = REAL_DTYPES + COMPLEX_DTYPES
+ALLDTYPES = INT_DTYPES + INEXACTDTYPES
+
+
+def sign_align(A, B):
+    """Align signs of columns of A match those of B: column-wise remove
+    sign of A by multiplying with its sign then multiply in sign of B.
+    """
+    return np.array([col_A * np.sign(col_A[0]) * np.sign(col_B[0])
+                     for col_A, col_B in zip(A.T, B.T)]).T
+
+def ElasticRod(n):
+    """Build the matrices for the generalized eigenvalue problem of the
+    fixed-free elastic rod vibration model.
+    """
+    L = 1.0
+    le = L/n
+    rho = 7.85e3
+    S = 1.e-4
+    E = 2.1e11
+    mass = rho*S*le/6.
+    k = E*S/le
+    A = k*(diag(r_[2.*ones(n-1), 1])-diag(ones(n-1), 1)-diag(ones(n-1), -1))
+    B = mass*(diag(r_[4.*ones(n-1), 2])+diag(ones(n-1), 1)+diag(ones(n-1), -1))
+    return A, B
+
+
+@pytest.mark.filterwarnings("ignore:The problem size")
+@pytest.mark.parametrize("n", [10, 20])
+@pytest.mark.filterwarnings("ignore:Exited at iteration")
+@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+def test_ElasticRod(n):
+    """Check eigh vs. lobpcg consistency for elastic rod model.
+    """
+    A, B = ElasticRod(n)
+    m = 2
+    rnd = np.random.RandomState(0)
+    X = rnd.standard_normal((n, m))
+    eigvals, _ = lobpcg(A, X, B=B, tol=1e-2, maxiter=50, largest=False)
+    eigvals.sort()
+    w, _ = eigh(A, b=B)
+    w.sort()
+    assert_almost_equal(w[:int(m/2)], eigvals[:int(m/2)], decimal=2)
+
+
+@pytest.mark.parametrize("n", [50])
+@pytest.mark.parametrize("m", [1, 2, 10])
+@pytest.mark.filterwarnings("ignore:Casting complex values to real")
+@pytest.mark.parametrize("Vdtype", INEXACTDTYPES)
+@pytest.mark.parametrize("Bdtype", ALLDTYPES)
+@pytest.mark.parametrize("BVdtype", INEXACTDTYPES)
+def test_b_orthonormalize(n, m, Vdtype, Bdtype, BVdtype):
+    """Test B-orthonormalization by Cholesky with callable 'B'.
+    The function '_b_orthonormalize' is key in LOBPCG but may
+    lead to numerical instabilities. The input vectors are often
+    badly scaled, so the function needs scale-invariant Cholesky;
+    see https://netlib.org/lapack/lawnspdf/lawn14.pdf.
+    """
+    rnd = np.random.RandomState(0)
+    X = rnd.standard_normal((n, m)).astype(Vdtype)
+    Xcopy = np.copy(X)
+    vals = np.arange(1, n+1, dtype=float)
+    B = dia_array(([vals], [0]), shape=(n, n)).astype(Bdtype)
+    BX = B @ X
+    BX = BX.astype(BVdtype)
+    is_all_complex = (np.issubdtype(Vdtype, np.complexfloating) and
+                     np.issubdtype(BVdtype, np.complexfloating))
+    is_all_notcomplex = (not np.issubdtype(Vdtype, np.complexfloating) and
+                        not np.issubdtype(Bdtype, np.complexfloating) and
+                        not np.issubdtype(BVdtype, np.complexfloating))
+
+    # All complex or all not complex can calculate in-place
+    check_inplace = is_all_complex or is_all_notcomplex
+    # np.longdouble tol cannot be achieved on most systems
+    atol = m * n * max(np.finfo(Vdtype).eps,
+                       np.finfo(BVdtype).eps,
+                       np.finfo(np.float64).eps)
+
+    Xo, BXo, _ = _b_orthonormalize(lambda v: B @ v, X, BX)
+    if check_inplace:
+        # Check in-place
+        assert_equal(X, Xo)
+        assert_equal(id(X), id(Xo))
+        assert_equal(BX, BXo)
+        assert_equal(id(BX), id(BXo))
+    # Check BXo
+    assert_allclose(B @ Xo, BXo, atol=atol, rtol=atol)
+    # Check B-orthonormality
+    assert_allclose(Xo.T.conj() @ B @ Xo, np.identity(m),
+                    atol=atol, rtol=atol)
+    # Repeat without BX in outputs
+    X = np.copy(Xcopy)
+    Xo1, BXo1, _ = _b_orthonormalize(lambda v: B @ v, X)
+    assert_allclose(Xo, Xo1, atol=atol, rtol=atol)
+    assert_allclose(BXo, BXo1, atol=atol, rtol=atol)
+    if check_inplace:
+        # Check in-place.
+        assert_equal(X, Xo1)
+        assert_equal(id(X), id(Xo1))
+    # Check BXo1
+    assert_allclose(B @ Xo1, BXo1, atol=atol, rtol=atol)
+
+    # Introduce column-scaling in X
+    scaling = 1.0 / np.geomspace(10, 1e10, num=m)
+    X = Xcopy * scaling
+    X = X.astype(Vdtype)
+    BX = B @ X
+    BX = BX.astype(BVdtype)
+    # Check scaling-invariance of Cholesky-based orthonormalization
+    Xo1, BXo1, _ = _b_orthonormalize(lambda v: B @ v, X, BX)
+    # The output should be the same, up the signs of the columns
+    Xo1 =  sign_align(Xo1, Xo)
+    assert_allclose(Xo, Xo1, atol=atol, rtol=atol)
+    BXo1 =  sign_align(BXo1, BXo)
+    assert_allclose(BXo, BXo1, atol=atol, rtol=atol)
+
+
+@pytest.mark.thread_unsafe
+@pytest.mark.filterwarnings("ignore:Exited at iteration 0")
+@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+def test_nonhermitian_warning(capsys):
+    """Check the warning of a Ritz matrix being not Hermitian
+    by feeding a non-Hermitian input matrix.
+    Also check stdout since verbosityLevel=1 and lack of stderr.
+    """
+    n = 10
+    X = np.arange(n * 2).reshape(n, 2).astype(np.float32)
+    A = np.arange(n * n).reshape(n, n).astype(np.float32)
+    with pytest.warns(UserWarning, match="Matrix gramA"):
+        _, _ = lobpcg(A, X, verbosityLevel=1, maxiter=0)
+    out, err = capsys.readouterr()  # Capture output
+    assert out.startswith("Solving standard eigenvalue")  # Test stdout
+    assert err == ''  # Test empty stderr
+    # Make the matrix symmetric and the UserWarning disappears.
+    A += A.T
+    _, _ = lobpcg(A, X, verbosityLevel=1, maxiter=0)
+    out, err = capsys.readouterr()  # Capture output
+    assert out.startswith("Solving standard eigenvalue")  # Test stdout
+    assert err == ''  # Test empty stderr
+
+
+def test_regression():
+    """Check the eigenvalue of the identity matrix is one.
+    """
+    # https://mail.python.org/pipermail/scipy-user/2010-October/026944.html
+    n = 10
+    X = np.ones((n, 1))
+    A = np.identity(n)
+    w, _ = lobpcg(A, X)
+    assert_allclose(w, [1])
+
+
+@pytest.mark.filterwarnings("ignore:The problem size")
+@pytest.mark.parametrize('n, m, m_excluded', [(30, 4, 3), (4, 2, 0)])
+def test_diagonal(n, m, m_excluded):
+    """Test ``m - m_excluded`` eigenvalues and eigenvectors of
+    diagonal matrices of the size ``n`` varying matrix formats:
+    dense array, spare matrix, and ``LinearOperator`` for both
+    matrixes in the generalized eigenvalue problem ``Av = cBv``
+    and for the preconditioner.
+    """
+    rnd = np.random.RandomState(0)
+
+    # Define the generalized eigenvalue problem Av = cBv
+    # where (c, v) is a generalized eigenpair,
+    # A is the diagonal matrix whose entries are 1,...n,
+    # B is the identity matrix.
+    vals = np.arange(1, n+1, dtype=float)
+    A_s = dia_array(([vals], [0]), shape=(n, n))
+    A_a = A_s.toarray()
+
+    def A_f(x):
+        return A_s @ x
+
+    A_lo = LinearOperator(matvec=A_f,
+                          matmat=A_f,
+                          shape=(n, n), dtype=float)
+
+    B_a = eye_array(n)
+    B_s = csr_array(B_a)
+
+    def B_f(x):
+        return B_a @ x
+
+    B_lo = LinearOperator(matvec=B_f,
+                          matmat=B_f,
+                          shape=(n, n), dtype=float)
+
+    # Let the preconditioner M be the inverse of A.
+    M_s = dia_array(([1./vals], [0]), shape=(n, n))
+    M_a = M_s.toarray()
+
+    def M_f(x):
+        return M_s @ x
+
+    M_lo = LinearOperator(matvec=M_f,
+                          matmat=M_f,
+                          shape=(n, n), dtype=float)
+
+    # Pick random initial vectors.
+    X = rnd.normal(size=(n, m))
+
+    # Require that the returned eigenvectors be in the orthogonal complement
+    # of the first few standard basis vectors.
+    if m_excluded > 0:
+        Y = np.eye(n, m_excluded)
+    else:
+        Y = None
+
+    for A in [A_a, A_s, A_lo]:
+        for B in [B_a, B_s, B_lo]:
+            for M in [M_a, M_s, M_lo]:
+                eigvals, vecs = lobpcg(A, X, B, M=M, Y=Y,
+                                       maxiter=40, largest=False)
+
+                assert_allclose(eigvals, np.arange(1+m_excluded,
+                                                   1+m_excluded+m))
+                _check_eigen(A, eigvals, vecs, rtol=1e-3, atol=1e-3)
+
+
+def _check_eigen(M, w, V, rtol=1e-8, atol=1e-14):
+    """Check if the eigenvalue residual is small.
+    """
+    mult_wV = np.multiply(w, V)
+    dot_MV = M.dot(V)
+    assert_allclose(mult_wV, dot_MV, rtol=rtol, atol=atol)
+
+
+def _check_fiedler(n, p):
+    """Check the Fiedler vector computation.
+    """
+    # This is not necessarily the recommended way to find the Fiedler vector.
+    col = np.zeros(n)
+    col[1] = 1
+    A = toeplitz(col)
+    D = np.diag(A.sum(axis=1))
+    L = D - A
+    # Compute the full eigendecomposition using tricks, e.g.
+    # http://www.cs.yale.edu/homes/spielman/561/2009/lect02-09.pdf
+    tmp = np.pi * np.arange(n) / n
+    analytic_w = 2 * (1 - np.cos(tmp))
+    analytic_V = np.cos(np.outer(np.arange(n) + 1/2, tmp))
+    _check_eigen(L, analytic_w, analytic_V)
+    # Compute the full eigendecomposition using eigh.
+    eigh_w, eigh_V = eigh(L)
+    _check_eigen(L, eigh_w, eigh_V)
+    # Check that the first eigenvalue is near zero and that the rest agree.
+    assert_array_less(np.abs([eigh_w[0], analytic_w[0]]), 1e-14)
+    assert_allclose(eigh_w[1:], analytic_w[1:])
+
+    # Check small lobpcg eigenvalues.
+    X = analytic_V[:, :p]
+    lobpcg_w, lobpcg_V = lobpcg(L, X, largest=False)
+    assert_equal(lobpcg_w.shape, (p,))
+    assert_equal(lobpcg_V.shape, (n, p))
+    _check_eigen(L, lobpcg_w, lobpcg_V)
+    assert_array_less(np.abs(np.min(lobpcg_w)), 1e-14)
+    assert_allclose(np.sort(lobpcg_w)[1:], analytic_w[1:p])
+
+    # Check large lobpcg eigenvalues.
+    X = analytic_V[:, -p:]
+    lobpcg_w, lobpcg_V = lobpcg(L, X, largest=True)
+    assert_equal(lobpcg_w.shape, (p,))
+    assert_equal(lobpcg_V.shape, (n, p))
+    _check_eigen(L, lobpcg_w, lobpcg_V)
+    assert_allclose(np.sort(lobpcg_w), analytic_w[-p:])
+
+    # Look for the Fiedler vector using good but not exactly correct guesses.
+    fiedler_guess = np.concatenate((np.ones(n//2), -np.ones(n-n//2)))
+    X = np.vstack((np.ones(n), fiedler_guess)).T
+    lobpcg_w, _ = lobpcg(L, X, largest=False)
+    # Mathematically, the smaller eigenvalue should be zero
+    # and the larger should be the algebraic connectivity.
+    lobpcg_w = np.sort(lobpcg_w)
+    assert_allclose(lobpcg_w, analytic_w[:2], atol=1e-14)
+
+
+@pytest.mark.thread_unsafe
+def test_fiedler_small_8():
+    """Check the dense workaround path for small matrices.
+    """
+    # This triggers the dense path because 8 < 2*5.
+    with pytest.warns(UserWarning, match="The problem size"):
+        _check_fiedler(8, 2)
+
+
+def test_fiedler_large_12():
+    """Check the dense workaround path avoided for non-small matrices.
+    """
+    # This does not trigger the dense path, because 2*5 <= 12.
+    _check_fiedler(12, 2)
+
+
+@pytest.mark.filterwarnings("ignore:Failed at iteration")
+@pytest.mark.filterwarnings("ignore:Exited at iteration")
+@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+def test_failure_to_run_iterations():
+    """Check that the code exits gracefully without breaking. Issue #10974.
+    The code may or not issue a warning, filtered out. Issue #15935, #17954.
+    """
+    rnd = np.random.RandomState(0)
+    X = rnd.standard_normal((100, 10))
+    A = X @ X.T
+    Q = rnd.standard_normal((X.shape[0], 4))
+    eigenvalues, _ = lobpcg(A, Q, maxiter=40, tol=1e-12)
+    assert np.max(eigenvalues) > 0
+
+
+@pytest.mark.thread_unsafe
+def test_failure_to_run_iterations_nonsymmetric():
+    """Check that the code exists gracefully without breaking
+    if the matrix in not symmetric.
+    """
+    A = np.zeros((10, 10))
+    A[0, 1] = 1
+    Q = np.ones((10, 1))
+    msg = "Exited at iteration 2|Exited postprocessing with accuracies.*"
+    with pytest.warns(UserWarning, match=msg):
+        eigenvalues, _ = lobpcg(A, Q, maxiter=20)
+    assert np.max(eigenvalues) > 0
+
+
+@pytest.mark.filterwarnings("ignore:The problem size")
+def test_hermitian():
+    """Check complex-value Hermitian cases.
+    """
+    rnd = np.random.RandomState(0)
+
+    sizes = [3, 12]
+    ks = [1, 2]
+    gens = [True, False]
+
+    for s, k, gen, dh, dx, db in (
+        itertools.product(sizes, ks, gens, gens, gens, gens)
+    ):
+        H = rnd.random((s, s)) + 1.j * rnd.random((s, s))
+        H = 10 * np.eye(s) + H + H.T.conj()
+        H = H.astype(np.complex128) if dh else H.astype(np.complex64)
+
+        X = rnd.standard_normal((s, k))
+        X = X + 1.j * rnd.standard_normal((s, k))
+        X = X.astype(np.complex128) if dx else X.astype(np.complex64)
+
+        if not gen:
+            B = np.eye(s)
+            w, v = lobpcg(H, X, maxiter=99, verbosityLevel=0)
+            # Also test mixing complex H with real B.
+            wb, _ = lobpcg(H, X, B, maxiter=99, verbosityLevel=0)
+            assert_allclose(w, wb, rtol=1e-6)
+            w0, _ = eigh(H)
+        else:
+            B = rnd.random((s, s)) + 1.j * rnd.random((s, s))
+            B = 10 * np.eye(s) + B.dot(B.T.conj())
+            B = B.astype(np.complex128) if db else B.astype(np.complex64)
+            w, v = lobpcg(H, X, B, maxiter=99, verbosityLevel=0)
+            w0, _ = eigh(H, B)
+
+        for wx, vx in zip(w, v.T):
+            # Check eigenvector
+            assert_allclose(np.linalg.norm(H.dot(vx) - B.dot(vx) * wx)
+                            / np.linalg.norm(H.dot(vx)),
+                            0, atol=5e-2, rtol=0)
+
+            # Compare eigenvalues
+            j = np.argmin(abs(w0 - wx))
+            assert_allclose(wx, w0[j], rtol=1e-4)
+
+
+# The n=5 case tests the alternative small matrix code path that uses eigh().
+@pytest.mark.filterwarnings("ignore:The problem size")
+@pytest.mark.parametrize('n, atol', [(20, 1e-3), (5, 1e-8)])
+def test_eigsh_consistency(n, atol):
+    """Check eigsh vs. lobpcg consistency.
+    """
+    vals = np.arange(1, n+1, dtype=np.float64)
+    A = dia_array((vals, 0), shape=(n, n))
+    rnd = np.random.RandomState(0)
+    X = rnd.standard_normal((n, 2))
+    lvals, lvecs = lobpcg(A, X, largest=True, maxiter=100)
+    vals, _ = eigsh(A, k=2)
+
+    _check_eigen(A, lvals, lvecs, atol=atol, rtol=0)
+    assert_allclose(np.sort(vals), np.sort(lvals), atol=1e-14)
+
+
+@pytest.mark.thread_unsafe
+def test_verbosity():
+    """Check that nonzero verbosity level code runs.
+    """
+    rnd = np.random.RandomState(0)
+    X = rnd.standard_normal((10, 10))
+    A = X @ X.T
+    Q = rnd.standard_normal((X.shape[0], 1))
+    msg = "Exited at iteration.*|Exited postprocessing with accuracies.*"
+    with pytest.warns(UserWarning, match=msg):
+        _, _ = lobpcg(A, Q, maxiter=3, verbosityLevel=9)
+
+
+@pytest.mark.xfail(_IS_32BIT and sys.platform == 'win32',
+                   reason="tolerance violation on windows")
+@pytest.mark.xfail(platform.machine() == 'ppc64le',
+                   reason="fails on ppc64le")
+@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+def test_tolerance_float32():
+    """Check lobpcg for attainable tolerance in float32.
+    """
+    rnd = np.random.RandomState(0)
+    n = 50
+    m = 3
+    vals = -np.arange(1, n + 1)
+    A = dia_array(([vals], [0]), shape=(n, n))
+    A = A.astype(np.float32)
+    X = rnd.standard_normal((n, m))
+    X = X.astype(np.float32)
+    eigvals, _ = lobpcg(A, X, tol=1.25e-5, maxiter=50, verbosityLevel=0)
+    assert_allclose(eigvals, -np.arange(1, 1 + m), atol=2e-5, rtol=1e-5)
+
+
+@pytest.mark.parametrize("vdtype", INEXACTDTYPES)
+@pytest.mark.parametrize("mdtype", ALLDTYPES)
+@pytest.mark.parametrize("arr_type", [np.array,
+                                      sparse.csr_array,
+                                      sparse.coo_array])
+def test_dtypes(vdtype, mdtype, arr_type):
+    """Test lobpcg in various dtypes.
+    """
+    rnd = np.random.RandomState(0)
+    n = 12
+    m = 2
+    A = arr_type(np.diag(np.arange(1, n + 1)).astype(mdtype))
+    X = rnd.random((n, m))
+    X = X.astype(vdtype)
+    eigvals, eigvecs = lobpcg(A, X, tol=1e-2, largest=False)
+    assert_allclose(eigvals, np.arange(1, 1 + m), atol=1e-1)
+    # eigenvectors must be nearly real in any case
+    assert_allclose(np.sum(np.abs(eigvecs - eigvecs.conj())), 0, atol=1e-2)
+
+
+@pytest.mark.thread_unsafe
+@pytest.mark.filterwarnings("ignore:Exited at iteration")
+@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+def test_inplace_warning():
+    """Check lobpcg gives a warning in '_b_orthonormalize'
+    that in-place orthogonalization is impossible due to dtype mismatch.
+    """
+    rnd = np.random.RandomState(0)
+    n = 6
+    m = 1
+    vals = -np.arange(1, n + 1)
+    A = dia_array(([vals], [0]), shape=(n, n))
+    A = A.astype(np.cdouble)
+    X = rnd.standard_normal((n, m))
+    with pytest.warns(UserWarning, match="Inplace update"):
+        eigvals, _ = lobpcg(A, X, maxiter=2, verbosityLevel=1)
+
+
+@pytest.mark.thread_unsafe
+def test_maxit():
+    """Check lobpcg if maxit=maxiter runs maxiter iterations and
+    if maxit=None runs 20 iterations (the default)
+    by checking the size of the iteration history output, which should
+    be the number of iterations plus 3 (initial, final, and postprocessing)
+    typically when maxiter is small and the choice of the best is passive.
+    """
+    rnd = np.random.RandomState(0)
+    n = 50
+    m = 4
+    vals = -np.arange(1, n + 1)
+    A = dia_array(([vals], [0]), shape=(n, n))
+    A = A.astype(np.float32)
+    X = rnd.standard_normal((n, m))
+    X = X.astype(np.float64)
+    msg = "Exited at iteration.*|Exited postprocessing with accuracies.*"
+    for maxiter in range(1, 4):
+        with pytest.warns(UserWarning, match=msg):
+            _, _, l_h, r_h = lobpcg(A, X, tol=1e-8, maxiter=maxiter,
+                                    retLambdaHistory=True,
+                                    retResidualNormsHistory=True)
+        assert_allclose(np.shape(l_h)[0], maxiter+3)
+        assert_allclose(np.shape(r_h)[0], maxiter+3)
+    with pytest.warns(UserWarning, match=msg):
+        l, _, l_h, r_h = lobpcg(A, X, tol=1e-8,
+                                retLambdaHistory=True,
+                                retResidualNormsHistory=True)
+    assert_allclose(np.shape(l_h)[0], 20+3)
+    assert_allclose(np.shape(r_h)[0], 20+3)
+    # Check that eigenvalue output is the last one in history
+    assert_allclose(l, l_h[-1])
+    # Make sure that both history outputs are lists
+    assert isinstance(l_h, list)
+    assert isinstance(r_h, list)
+    # Make sure that both history lists are arrays-like
+    assert_allclose(np.shape(l_h), np.shape(np.asarray(l_h)))
+    assert_allclose(np.shape(r_h), np.shape(np.asarray(r_h)))
+
+
+@pytest.mark.xslow
+@pytest.mark.filterwarnings("ignore:Exited at iteration")
+@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+def test_sakurai():
+    """Check lobpcg and eighs accuracy for the Sakurai example
+    already used in `benchmarks/benchmarks/sparse_linalg_lobpcg.py`.
+    """
+    n = 50
+    tol = 100 * n * n * n* np.finfo(float).eps
+    sakurai_obj = Sakurai(n, dtype='int')
+    A = sakurai_obj
+    m = 3
+    ee = sakurai_obj.eigenvalues(3)
+    rng = np.random.default_rng(0)
+    X = rng.normal(size=(n, m))
+    el, _ = lobpcg(A, X, tol=1e-9, maxiter=5000, largest=False)
+    accuracy = max(abs(ee - el) / ee)
+    assert_allclose(accuracy, 0., atol=tol)
+    a_l = LinearOperator((n, n), matvec=A, matmat=A, dtype='float64')
+    ea, _ = eigsh(a_l, k=m, which='SA', tol=1e-9, maxiter=15000,
+                  v0 = rng.normal(size=(n, 1)))
+    accuracy = max(abs(ee - ea) / ee)
+    assert_allclose(accuracy, 0., atol=tol)
+
+
+@pytest.mark.parametrize("n", [500, 1000])
+@pytest.mark.filterwarnings("ignore:Exited at iteration")
+@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+def test_sakurai_inverse(n):
+    """Check lobpcg and eighs accuracy for the sakurai_inverse example
+    already used in `benchmarks/benchmarks/sparse_linalg_lobpcg.py`.
+    """
+    def a(x):
+        return cho_solve_banded((c, False), x)
+    tol = 100 * n * n * n* np.finfo(float).eps
+    sakurai_obj = Sakurai(n)
+    A = sakurai_obj.tobanded().astype(np.float64)
+    m = 3
+    ee = sakurai_obj.eigenvalues(3)
+    rng = np.random.default_rng(0)
+    X = rng.normal(size=(n, m))
+    c = cholesky_banded(A)
+    el, _ = lobpcg(a, X, tol=1e-9, maxiter=8)
+    accuracy = max(abs(ee - 1. / el) / ee)
+    assert_allclose(accuracy, 0., atol=tol)
+    a_l = LinearOperator((n, n), matvec=a, matmat=a, dtype='float64')
+    ea, _ = eigsh(a_l, k=m, which='LA', tol=1e-9, maxiter=8,
+                  v0 = rng.normal(size=(n, 1)))
+    accuracy = max(abs(ee - np.sort(1. / ea)) / ee)
+    assert_allclose(accuracy, 0., atol=tol)
+
+
+@pytest.mark.filterwarnings("ignore:The problem size")
+@pytest.mark.parametrize("n", [10, 20, 128, 256, 512, 1024, 2048])
+@pytest.mark.filterwarnings("ignore:Exited at iteration")
+@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+def test_MikotaPair(n):
+    """Check lobpcg and eighs accuracy for the Mikota example
+    already used in `benchmarks/benchmarks/sparse_linalg_lobpcg.py`.
+    """
+    def a(x):
+        return cho_solve_banded((c, False), x)
+    mik = MikotaPair(n)
+    mik_k = mik.k
+    mik_m = mik.m
+    Ac = mik_k
+    Bc = mik_m
+    Ab = mik_k.tobanded()
+    eigenvalues = mik.eigenvalues
+    if n == 10:
+        m = 3 # lobpcg calls eigh
+    elif n == 20:
+        m = 2
+    else:
+        m = 10
+    ee = eigenvalues(m)
+    tol = 100 * m * n * n * np.finfo(float).eps
+    rng = np.random.default_rng(0)
+    X = rng.normal(size=(n, m))
+    c = cholesky_banded(Ab.astype(np.float32))
+    el, _ = lobpcg(Ac, X, Bc, M=a, tol=1e-4,
+                   maxiter=40, largest=False)
+    accuracy = max(abs(ee - el) / ee)
+    assert_allclose(accuracy, 0., atol=tol)
+    B = LinearOperator((n, n), matvec=Bc, matmat=Bc, dtype='float64')
+    A = LinearOperator((n, n), matvec=Ac, matmat=Ac, dtype='float64')
+    c = cholesky_banded(Ab)
+    a_l = LinearOperator((n, n), matvec=a, matmat=a, dtype='float64')
+    ea, _ = eigsh(B, k=m, M=A, Minv=a_l, which='LA', tol=1e-4, maxiter=50,
+                  v0 = rng.normal(size=(n, 1)))
+    accuracy = max(abs(ee - np.sort(1./ea)) / ee)
+    assert_allclose(accuracy, 0., atol=tol)
+
+
+@pytest.mark.slow
+@pytest.mark.parametrize("n", [15])
+@pytest.mark.parametrize("m", [1, 2])
+@pytest.mark.filterwarnings("ignore:Exited at iteration")
+@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+def test_diagonal_data_types(n, m):
+    """Check lobpcg for diagonal matrices for all matrix types.
+    Constraints are imposed, so a dense eigensolver eig cannot run.
+    """
+    rnd = np.random.RandomState(0)
+    # Define the generalized eigenvalue problem Av = cBv
+    # where (c, v) is a generalized eigenpair,
+    # and where we choose A  and B to be diagonal.
+    vals = np.arange(1, n + 1)
+
+    list_sparse_format = ['bsr', 'coo', 'csc', 'csr', 'dia', 'dok', 'lil']
+    for s_f_i, s_f in enumerate(list_sparse_format):
+
+        As64 = dia_array(([vals * vals], [0]), shape=(n, n)).asformat(s_f)
+        As32 = As64.astype(np.float32)
+        Af64 = As64.toarray()
+        Af32 = Af64.astype(np.float32)
+
+        def As32f(x):
+            return As32 @ x
+        As32LO = LinearOperator(matvec=As32f,
+                                matmat=As32f,
+                                shape=(n, n),
+                                dtype=As32.dtype)
+
+        listA = [Af64, As64, Af32, As32, As32f, As32LO, lambda v: As32 @ v]
+
+        Bs64 = dia_array(([vals], [0]), shape=(n, n)).asformat(s_f)
+        Bf64 = Bs64.toarray()
+        Bs32 = Bs64.astype(np.float32)
+
+        def Bs32f(x):
+            return Bs32 @ x
+        Bs32LO = LinearOperator(matvec=Bs32f,
+                                matmat=Bs32f,
+                                shape=(n, n),
+                                dtype=Bs32.dtype)
+        listB = [Bf64, Bs64, Bs32, Bs32f, Bs32LO, lambda v: Bs32 @ v]
+
+        # Define the preconditioner function as LinearOperator.
+        Ms64 = dia_array(([1./vals], [0]), shape=(n, n)).asformat(s_f)
+
+        def Ms64precond(x):
+            return Ms64 @ x
+        Ms64precondLO = LinearOperator(matvec=Ms64precond,
+                                       matmat=Ms64precond,
+                                       shape=(n, n),
+                                       dtype=Ms64.dtype)
+        Mf64 = Ms64.toarray()
+
+        def Mf64precond(x):
+            return Mf64 @ x
+        Mf64precondLO = LinearOperator(matvec=Mf64precond,
+                                       matmat=Mf64precond,
+                                       shape=(n, n),
+                                       dtype=Mf64.dtype)
+        Ms32 = Ms64.astype(np.float32)
+
+        def Ms32precond(x):
+            return Ms32 @ x
+        Ms32precondLO = LinearOperator(matvec=Ms32precond,
+                                       matmat=Ms32precond,
+                                       shape=(n, n),
+                                       dtype=Ms32.dtype)
+        Mf32 = Ms32.toarray()
+
+        def Mf32precond(x):
+            return Mf32 @ x
+        Mf32precondLO = LinearOperator(matvec=Mf32precond,
+                                       matmat=Mf32precond,
+                                       shape=(n, n),
+                                       dtype=Mf32.dtype)
+        listM = [None, Ms64, Ms64precondLO, Mf64precondLO, Ms64precond,
+                 Ms32, Ms32precondLO, Mf32precondLO, Ms32precond]
+
+        # Setup matrix of the initial approximation to the eigenvectors
+        # (cannot be sparse array).
+        Xf64 = rnd.random((n, m))
+        Xf32 = Xf64.astype(np.float32)
+        listX = [Xf64, Xf32]
+
+        # Require that the returned eigenvectors be in the orthogonal complement
+        # of the first few standard basis vectors (cannot be sparse array).
+        m_excluded = 3
+        Yf64 = np.eye(n, m_excluded, dtype=float)
+        Yf32 = np.eye(n, m_excluded, dtype=np.float32)
+        listY = [Yf64, Yf32]
+
+        tests = list(itertools.product(listA, listB, listM, listX, listY))
+
+        for A, B, M, X, Y in tests:
+            # This is one of the slower tests because there are >1,000 configs
+            # to test here. Flip a biased coin to decide whether to run  each
+            # test to get decent coverage in less time.
+            if rnd.random() < 0.98:
+                continue  # too many tests
+            eigvals, _ = lobpcg(A, X, B=B, M=M, Y=Y, tol=1e-4,
+                                maxiter=100, largest=False)
+            assert_allclose(eigvals,
+                            np.arange(1 + m_excluded, 1 + m_excluded + m),
+                            atol=1e-5)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_eigen/tests/test_svds.py

@@ -0,0 +1,886 @@
+import re
+import copy
+import numpy as np
+
+from numpy.testing import assert_allclose, assert_equal, assert_array_equal
+import pytest
+
+from scipy.linalg import svd, null_space
+from scipy.sparse import csc_array, issparse, dia_array, random_array
+from scipy.sparse.linalg import LinearOperator, aslinearoperator
+from scipy.sparse.linalg import svds
+from scipy.sparse.linalg._eigen.arpack import ArpackNoConvergence
+
+
+# --- Helper Functions / Classes ---
+
+
+def sorted_svd(m, k, which='LM'):
+    # Compute svd of a dense matrix m, and return singular vectors/values
+    # sorted.
+    if issparse(m):
+        m = m.toarray()
+    u, s, vh = svd(m)
+    if which == 'LM':
+        ii = np.argsort(s)[-k:]
+    elif which == 'SM':
+        ii = np.argsort(s)[:k]
+    else:
+        raise ValueError(f"unknown which={which!r}")
+
+    return u[:, ii], s[ii], vh[ii]
+
+
+def _check_svds(A, k, u, s, vh, which="LM", check_usvh_A=False,
+                check_svd=True, atol=1e-10, rtol=1e-7):
+    n, m = A.shape
+
+    # Check shapes.
+    assert_equal(u.shape, (n, k))
+    assert_equal(s.shape, (k,))
+    assert_equal(vh.shape, (k, m))
+
+    # Check that the original matrix can be reconstituted.
+    A_rebuilt = (u*s).dot(vh)
+    assert_equal(A_rebuilt.shape, A.shape)
+    if check_usvh_A:
+        assert_allclose(A_rebuilt, A, atol=atol, rtol=rtol)
+
+    # Check that u is a semi-orthogonal matrix.
+    uh_u = np.dot(u.T.conj(), u)
+    assert_equal(uh_u.shape, (k, k))
+    assert_allclose(uh_u, np.identity(k), atol=atol, rtol=rtol)
+
+    # Check that vh is a semi-orthogonal matrix.
+    vh_v = np.dot(vh, vh.T.conj())
+    assert_equal(vh_v.shape, (k, k))
+    assert_allclose(vh_v, np.identity(k), atol=atol, rtol=rtol)
+
+    # Check that scipy.sparse.linalg.svds ~ scipy.linalg.svd
+    if check_svd:
+        u2, s2, vh2 = sorted_svd(A, k, which)
+        assert_allclose(np.abs(u), np.abs(u2), atol=atol, rtol=rtol)
+        assert_allclose(s, s2, atol=atol, rtol=rtol)
+        assert_allclose(np.abs(vh), np.abs(vh2), atol=atol, rtol=rtol)
+
+
+def _check_svds_n(A, k, u, s, vh, which="LM", check_res=True,
+                  check_svd=True, atol=1e-10, rtol=1e-7):
+    n, m = A.shape
+
+    # Check shapes.
+    assert_equal(u.shape, (n, k))
+    assert_equal(s.shape, (k,))
+    assert_equal(vh.shape, (k, m))
+
+    # Check that u is a semi-orthogonal matrix.
+    uh_u = np.dot(u.T.conj(), u)
+    assert_equal(uh_u.shape, (k, k))
+    error = np.sum(np.abs(uh_u - np.identity(k))) / (k * k)
+    assert_allclose(error, 0.0, atol=atol, rtol=rtol)
+
+    # Check that vh is a semi-orthogonal matrix.
+    vh_v = np.dot(vh, vh.T.conj())
+    assert_equal(vh_v.shape, (k, k))
+    error = np.sum(np.abs(vh_v - np.identity(k))) / (k * k)
+    assert_allclose(error, 0.0, atol=atol, rtol=rtol)
+
+    # Check residuals
+    if check_res:
+        ru = A.T.conj() @ u - vh.T.conj() * s
+        rus = np.sum(np.abs(ru)) / (n * k)
+        rvh = A @ vh.T.conj() - u * s
+        rvhs = np.sum(np.abs(rvh)) / (m * k)
+        assert_allclose(rus, 0.0, atol=atol, rtol=rtol)
+        assert_allclose(rvhs, 0.0, atol=atol, rtol=rtol)
+
+    # Check that scipy.sparse.linalg.svds ~ scipy.linalg.svd
+    if check_svd:
+        u2, s2, vh2 = sorted_svd(A, k, which)
+        assert_allclose(s, s2, atol=atol, rtol=rtol)
+        A_rebuilt_svd = (u2*s2).dot(vh2)
+        A_rebuilt = (u*s).dot(vh)
+        assert_equal(A_rebuilt.shape, A.shape)
+        error = np.sum(np.abs(A_rebuilt_svd - A_rebuilt)) / (k * k)
+        assert_allclose(error, 0.0, atol=atol, rtol=rtol)
+
+
+class CheckingLinearOperator(LinearOperator):
+    def __init__(self, A):
+        self.A = A
+        self.dtype = A.dtype
+        self.shape = A.shape
+
+    def _matvec(self, x):
+        assert_equal(max(x.shape), np.size(x))
+        return self.A.dot(x)
+
+    def _rmatvec(self, x):
+        assert_equal(max(x.shape), np.size(x))
+        return self.A.T.conjugate().dot(x)
+
+
+# --- Test Input Validation ---
+# Tests input validation on parameters `k` and `which`.
+# Needs better input validation checks for all other parameters.
+
+class SVDSCommonTests:
+
+    solver = None
+
+    # some of these IV tests could run only once, say with solver=None
+
+    _A_empty_msg = "`A` must not be empty."
+    _A_dtype_msg = "`A` must be of numeric data type"
+    _A_type_msg = "type not understood"
+    _A_ndim_msg = "array must have ndim <= 2"
+    _A_validation_inputs = [
+        (np.asarray([[]]), ValueError, _A_empty_msg),
+        (np.array([['a', 'b'], ['c', 'd']], dtype='object'), ValueError, _A_dtype_msg),
+        ("hi", TypeError, _A_type_msg),
+        (np.asarray([[[1., 2.], [3., 4.]]]), ValueError, _A_ndim_msg)]
+
+    @pytest.mark.parametrize("args", _A_validation_inputs)
+    def test_svds_input_validation_A(self, args):
+        A, error_type, message = args
+        with pytest.raises(error_type, match=message):
+            svds(A, k=1, solver=self.solver, rng=0)
+
+    @pytest.mark.parametrize("which", ["LM", "SM"])
+    def test_svds_int_A(self, which):
+        A = np.asarray([[1, 2], [3, 4]])
+        if self.solver == 'lobpcg':
+            with pytest.warns(UserWarning, match="The problem size"):
+                res = svds(A, k=1, which=which, solver=self.solver, rng=0)
+        else:
+            res = svds(A, k=1, which=which, solver=self.solver, rng=0)
+        _check_svds(A, 1, *res, which=which, atol=8e-10)
+
+    def test_svds_diff0_docstring_example(self):
+        def diff0(a):
+            return np.diff(a, axis=0)
+        def diff0t(a):
+            if a.ndim == 1:
+                a = a[:,np.newaxis]  # Turn 1D into 2D array
+            d = np.zeros((a.shape[0] + 1, a.shape[1]), dtype=a.dtype)
+            d[0, :] = - a[0, :]
+            d[1:-1, :] = a[0:-1, :] - a[1:, :]
+            d[-1, :] = a[-1, :]
+            return d
+        def diff0_func_aslo_def(n):
+            return LinearOperator(matvec=diff0,
+                                  matmat=diff0,
+                                  rmatvec=diff0t,
+                                  rmatmat=diff0t,
+                                  shape=(n - 1, n))
+        n = 100
+        diff0_func_aslo = diff0_func_aslo_def(n)
+        # preserve a use of legacy keyword `random_state` during SPEC 7 transition
+        u, s, _ = svds(diff0_func_aslo, k=3, which='SM', random_state=0)
+        se = 2. * np.sin(np.pi * np.arange(1, 4) / (2. * n))
+        ue = np.sqrt(2 / n) * np.sin(np.pi * np.outer(np.arange(1, n),
+                                     np.arange(1, 4)) / n)
+        assert_allclose(s, se, atol=1e-3)
+        assert_allclose(np.abs(u), np.abs(ue), atol=1e-6)
+
+    @pytest.mark.parametrize("k", [-1, 0, 3, 4, 5, 1.5, "1"])
+    def test_svds_input_validation_k_1(self, k):
+        rng = np.random.default_rng(0)
+        A = rng.random((4, 3))
+
+        # propack can do complete SVD
+        if self.solver == 'propack' and k == 3:
+            res = svds(A, k=k, solver=self.solver, rng=0)
+            _check_svds(A, k, *res, check_usvh_A=True, check_svd=True)
+            return
+
+        message = ("`k` must be an integer satisfying")
+        with pytest.raises(ValueError, match=message):
+            svds(A, k=k, solver=self.solver, rng=0)
+
+    def test_svds_input_validation_k_2(self):
+        # I think the stack trace is reasonable when `k` can't be converted
+        # to an int.
+        message = "int() argument must be a"
+        with pytest.raises(TypeError, match=re.escape(message)):
+            svds(np.eye(10), k=[], solver=self.solver, rng=0)
+
+        message = "invalid literal for int()"
+        with pytest.raises(ValueError, match=message):
+            svds(np.eye(10), k="hi", solver=self.solver, rng=0)
+
+    @pytest.mark.parametrize("tol", (-1, np.inf, np.nan))
+    def test_svds_input_validation_tol_1(self, tol):
+        message = "`tol` must be a non-negative floating point value."
+        with pytest.raises(ValueError, match=message):
+            svds(np.eye(10), tol=tol, solver=self.solver, rng=0)
+
+    @pytest.mark.parametrize("tol", ([], 'hi'))
+    def test_svds_input_validation_tol_2(self, tol):
+        # I think the stack trace is reasonable here
+        message = "'<' not supported between instances"
+        with pytest.raises(TypeError, match=message):
+            svds(np.eye(10), tol=tol, solver=self.solver, rng=0)
+
+    @pytest.mark.parametrize("which", ('LA', 'SA', 'ekki', 0))
+    def test_svds_input_validation_which(self, which):
+        # Regression test for a github issue.
+        # https://github.com/scipy/scipy/issues/4590
+        # Function was not checking for eigenvalue type and unintended
+        # values could be returned.
+        with pytest.raises(ValueError, match="`which` must be in"):
+            svds(np.eye(10), which=which, solver=self.solver, rng=0)
+
+    @pytest.mark.parametrize("transpose", (True, False))
+    @pytest.mark.parametrize("n", range(4, 9))
+    def test_svds_input_validation_v0_1(self, transpose, n):
+        rng = np.random.default_rng(0)
+        A = rng.random((5, 7))
+        v0 = rng.random(n)
+        if transpose:
+            A = A.T
+        k = 2
+        message = "`v0` must have shape"
+
+        required_length = (A.shape[0] if self.solver == 'propack'
+                           else min(A.shape))
+        if n != required_length:
+            with pytest.raises(ValueError, match=message):
+                svds(A, k=k, v0=v0, solver=self.solver, rng=0)
+
+    def test_svds_input_validation_v0_2(self):
+        A = np.ones((10, 10))
+        v0 = np.ones((1, 10))
+        message = "`v0` must have shape"
+        with pytest.raises(ValueError, match=message):
+            svds(A, k=1, v0=v0, solver=self.solver, rng=0)
+
+    @pytest.mark.parametrize("v0", ("hi", 1, np.ones(10, dtype=int)))
+    def test_svds_input_validation_v0_3(self, v0):
+        A = np.ones((10, 10))
+        message = "`v0` must be of floating or complex floating data type."
+        with pytest.raises(ValueError, match=message):
+            svds(A, k=1, v0=v0, solver=self.solver, rng=0)
+
+    @pytest.mark.parametrize("maxiter", (-1, 0, 5.5))
+    def test_svds_input_validation_maxiter_1(self, maxiter):
+        message = ("`maxiter` must be a positive integer.")
+        with pytest.raises(ValueError, match=message):
+            svds(np.eye(10), maxiter=maxiter, solver=self.solver, rng=0)
+
+    def test_svds_input_validation_maxiter_2(self):
+        # I think the stack trace is reasonable when `k` can't be converted
+        # to an int.
+        message = "int() argument must be a"
+        with pytest.raises(TypeError, match=re.escape(message)):
+            svds(np.eye(10), maxiter=[], solver=self.solver, rng=0)
+
+        message = "invalid literal for int()"
+        with pytest.raises(ValueError, match=message):
+            svds(np.eye(10), maxiter="hi", solver=self.solver, rng=0)
+
+    @pytest.mark.parametrize("rsv", ('ekki', 10))
+    def test_svds_input_validation_return_singular_vectors(self, rsv):
+        message = "`return_singular_vectors` must be in"
+        with pytest.raises(ValueError, match=message):
+            svds(np.eye(10), return_singular_vectors=rsv, solver=self.solver, rng=0)
+
+    # --- Test Parameters ---
+    @pytest.mark.thread_unsafe
+    @pytest.mark.parametrize("k", [3, 5])
+    @pytest.mark.parametrize("which", ["LM", "SM"])
+    def test_svds_parameter_k_which(self, k, which):
+        # check that the `k` parameter sets the number of eigenvalues/
+        # eigenvectors returned.
+        # Also check that the `which` parameter sets whether the largest or
+        # smallest eigenvalues are returned
+        rng = np.random.default_rng(0)
+        A = rng.random((10, 10))
+        if self.solver == 'lobpcg':
+            with pytest.warns(UserWarning, match="The problem size"):
+                res = svds(A, k=k, which=which, solver=self.solver, rng=0)
+        else:
+            res = svds(A, k=k, which=which, solver=self.solver, rng=0)
+        _check_svds(A, k, *res, which=which, atol=1e-9, rtol=2e-13)
+
+    @pytest.mark.filterwarnings("ignore:Exited",
+                                reason="Ignore LOBPCG early exit.")
+    # loop instead of parametrize for simplicity
+    def test_svds_parameter_tol(self):
+        # check the effect of the `tol` parameter on solver accuracy by solving
+        # the same problem with varying `tol` and comparing the eigenvalues
+        # against ground truth computed
+        n = 100  # matrix size
+        k = 3    # number of eigenvalues to check
+
+        # generate a random, sparse-ish matrix
+        # effect isn't apparent for matrices that are too small
+        rng = np.random.default_rng(0)
+        A = rng.random((n, n))
+        A[A > .1] = 0
+        A = A @ A.T
+
+        _, s, _ = svd(A)  # calculate ground truth
+
+        # calculate the error as a function of `tol`
+        A = csc_array(A)
+
+        def err(tol):
+            _, s2, _ = svds(A, k=k, v0=np.ones(n), maxiter=1000,
+                            solver=self.solver, tol=tol, rng=0)
+            return np.linalg.norm((s2 - s[k-1::-1])/s[k-1::-1])
+
+        tols = [1e-4, 1e-2, 1e0]  # tolerance levels to check
+        # for 'arpack' and 'propack', accuracies make discrete steps
+        accuracies = {'propack': [1e-12, 1e-6, 1e-4],
+                      'arpack': [2.5e-15, 1e-10, 1e-10],
+                      'lobpcg': [2e-12, 4e-2, 2]}
+
+        for tol, accuracy in zip(tols, accuracies[self.solver]):
+            error = err(tol)
+            assert error < accuracy
+
+    def test_svd_v0(self):
+        # check that the `v0` parameter affects the solution
+        n = 100
+        k = 1
+        # If k != 1, LOBPCG needs more initial vectors, which are generated
+        # with rng, so it does not pass w/ k >= 2.
+        # For some other values of `n`, the AssertionErrors are not raised
+        # with different v0s, which is reasonable.
+
+        rng = np.random.default_rng(0)
+        A = rng.random((n, n))
+
+        # with the same v0, solutions are the same, and they are accurate
+        # v0 takes precedence over rng
+        v0a = rng.random(n)
+        res1a = svds(A, k, v0=v0a, solver=self.solver, rng=0)
+        res2a = svds(A, k, v0=v0a, solver=self.solver, rng=1)
+        for idx in range(3):
+            assert_allclose(res1a[idx], res2a[idx], rtol=1e-15, atol=2e-16)
+        _check_svds(A, k, *res1a)
+
+        # with the same v0, solutions are the same, and they are accurate
+        v0b = rng.random(n)
+        res1b = svds(A, k, v0=v0b, solver=self.solver, rng=2)
+        res2b = svds(A, k, v0=v0b, solver=self.solver, rng=3)
+        for idx in range(3):
+            assert_allclose(res1b[idx], res2b[idx], rtol=1e-15, atol=2e-16)
+        _check_svds(A, k, *res1b)
+
+        # with different v0, solutions can be numerically different
+        message = "Arrays are not equal"
+        with pytest.raises(AssertionError, match=message):
+            assert_equal(res1a, res1b)
+
+    def test_svd_rng(self):
+        # check that the `rng` parameter affects the solution
+        # Admittedly, `n` and `k` are chosen so that all solver pass all
+        # these checks. That's a tall order, since LOBPCG doesn't want to
+        # achieve the desired accuracy and ARPACK often returns the same
+        # singular values/vectors for different v0.
+        n = 100
+        k = 1
+
+        rng = np.random.default_rng(0)
+        A = rng.random((n, n))
+
+        # with the same rng, solutions are the same and accurate
+        res1a = svds(A, k, solver=self.solver, rng=0)
+        res2a = svds(A, k, solver=self.solver, rng=0)
+        for idx in range(3):
+            assert_allclose(res1a[idx], res2a[idx], rtol=1e-15, atol=2e-16)
+        _check_svds(A, k, *res1a)
+
+        # with the same rng, solutions are the same and accurate
+        res1b = svds(A, k, solver=self.solver, rng=1)
+        res2b = svds(A, k, solver=self.solver, rng=1)
+        for idx in range(3):
+            assert_allclose(res1b[idx], res2b[idx], rtol=1e-15, atol=2e-16)
+        _check_svds(A, k, *res1b)
+
+        # with different rng, solutions can be numerically different
+        message = "Arrays are not equal"
+        with pytest.raises(AssertionError, match=message):
+            assert_equal(res1a, res1b)
+
+    def test_svd_rng_2(self):
+        n = 100
+        k = 1
+
+        rng = np.random.default_rng(234981)
+        A = rng.random((n, n))
+        rng_2 = copy.deepcopy(rng)
+
+        # with the same rng, solutions are the same and accurate
+        res1a = svds(A, k, solver=self.solver, rng=rng)
+        res2a = svds(A, k, solver=self.solver, rng=rng_2)
+        for idx in range(3):
+            assert_allclose(res1a[idx], res2a[idx], rtol=1e-15, atol=2e-16)
+        _check_svds(A, k, *res1a)
+
+    @pytest.mark.filterwarnings("ignore:Exited",
+                                reason="Ignore LOBPCG early exit.")
+    def test_svd_rng_3(self):
+        n = 100
+        k = 5
+
+        rng1 = np.random.default_rng(0)
+        rng2 = np.random.default_rng(234832)
+        A = rng1.random((n, n))
+
+        # rng in different state produces accurate - but not
+        # not necessarily identical - results
+        res1a = svds(A, k, solver=self.solver, rng=rng1, maxiter=1000)
+        res2a = svds(A, k, solver=self.solver, rng=rng2, maxiter=1000)
+        _check_svds(A, k, *res1a, atol=2e-7)
+        _check_svds(A, k, *res2a, atol=2e-7)
+
+        message = "Arrays are not equal"
+        with pytest.raises(AssertionError, match=message):
+            assert_equal(res1a, res2a)
+
+    @pytest.mark.thread_unsafe
+    @pytest.mark.filterwarnings("ignore:Exited postprocessing")
+    def test_svd_maxiter(self):
+        # check that maxiter works as expected: should not return accurate
+        # solution after 1 iteration, but should with default `maxiter`
+        A = np.diag(np.arange(9)).astype(np.float64)
+        k = 1
+        u, s, vh = sorted_svd(A, k)
+        # Use default maxiter by default
+        maxiter = None
+
+        if self.solver == 'arpack':
+            message = "ARPACK error -1: No convergence"
+            with pytest.raises(ArpackNoConvergence, match=message):
+                svds(A, k, ncv=3, maxiter=1, solver=self.solver, rng=0)
+        elif self.solver == 'lobpcg':
+            # Set maxiter higher so test passes without changing
+            # default and breaking backward compatibility (gh-20221)
+            maxiter = 30
+            with pytest.warns(UserWarning, match="Exited at iteration"):
+                svds(A, k, maxiter=1, solver=self.solver, rng=0)
+        elif self.solver == 'propack':
+            message = "k=1 singular triplets did not converge within"
+            with pytest.raises(np.linalg.LinAlgError, match=message):
+                svds(A, k, maxiter=1, solver=self.solver, rng=0)
+
+        ud, sd, vhd = svds(A, k, solver=self.solver, maxiter=maxiter, rng=0)
+        _check_svds(A, k, ud, sd, vhd, atol=1e-8)
+        assert_allclose(np.abs(ud), np.abs(u), atol=1e-8)
+        assert_allclose(np.abs(vhd), np.abs(vh), atol=1e-8)
+        assert_allclose(np.abs(sd), np.abs(s), atol=1e-9)
+
+    @pytest.mark.thread_unsafe
+    @pytest.mark.parametrize("rsv", (True, False, 'u', 'vh'))
+    @pytest.mark.parametrize("shape", ((5, 7), (6, 6), (7, 5)))
+    def test_svd_return_singular_vectors(self, rsv, shape):
+        # check that the return_singular_vectors parameter works as expected
+        rng = np.random.default_rng(0)
+        A = rng.random(shape)
+        k = 2
+        M, N = shape
+        u, s, vh = sorted_svd(A, k)
+
+        respect_u = True if self.solver == 'propack' else M <= N
+        respect_vh = True if self.solver == 'propack' else M > N
+
+        if self.solver == 'lobpcg':
+            with pytest.warns(UserWarning, match="The problem size"):
+                if rsv is False:
+                    s2 = svds(A, k, return_singular_vectors=rsv,
+                              solver=self.solver, rng=rng)
+                    assert_allclose(s2, s)
+                elif rsv == 'u' and respect_u:
+                    u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
+                                       solver=self.solver, rng=rng)
+                    assert_allclose(np.abs(u2), np.abs(u))
+                    assert_allclose(s2, s)
+                    assert vh2 is None
+                elif rsv == 'vh' and respect_vh:
+                    u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
+                                       solver=self.solver, rng=rng)
+                    assert u2 is None
+                    assert_allclose(s2, s)
+                    assert_allclose(np.abs(vh2), np.abs(vh))
+                else:
+                    u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
+                                       solver=self.solver, rng=rng)
+                    if u2 is not None:
+                        assert_allclose(np.abs(u2), np.abs(u))
+                    assert_allclose(s2, s)
+                    if vh2 is not None:
+                        assert_allclose(np.abs(vh2), np.abs(vh))
+        else:
+            if rsv is False:
+                s2 = svds(A, k, return_singular_vectors=rsv,
+                          solver=self.solver, rng=rng)
+                assert_allclose(s2, s)
+            elif rsv == 'u' and respect_u:
+                u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
+                                   solver=self.solver, rng=rng)
+                assert_allclose(np.abs(u2), np.abs(u))
+                assert_allclose(s2, s)
+                assert vh2 is None
+            elif rsv == 'vh' and respect_vh:
+                u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
+                                   solver=self.solver, rng=rng)
+                assert u2 is None
+                assert_allclose(s2, s)
+                assert_allclose(np.abs(vh2), np.abs(vh))
+            else:
+                u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
+                                   solver=self.solver, rng=rng)
+                if u2 is not None:
+                    assert_allclose(np.abs(u2), np.abs(u))
+                assert_allclose(s2, s)
+                if vh2 is not None:
+                    assert_allclose(np.abs(vh2), np.abs(vh))
+
+    # --- Test Basic Functionality ---
+    # Tests the accuracy of each solver for real and complex matrices provided
+    # as list, dense array, sparse matrix, and LinearOperator.
+
+    A1 = [[1, 2, 3], [3, 4, 3], [1 + 1j, 0, 2], [0, 0, 1]]
+    A2 = [[1, 2, 3, 8 + 5j], [3 - 2j, 4, 3, 5], [1, 0, 2, 3], [0, 0, 1, 0]]
+
+    @pytest.mark.thread_unsafe
+    @pytest.mark.filterwarnings("ignore:k >= N - 1",
+                                reason="needed to demonstrate #16725")
+    @pytest.mark.parametrize('A', (A1, A2))
+    @pytest.mark.parametrize('k', range(1, 5))
+    # PROPACK fails a lot if @pytest.mark.parametrize('which', ("SM", "LM"))
+    @pytest.mark.parametrize('real', (True, False))
+    @pytest.mark.parametrize('transpose', (False, True))
+    # In gh-14299, it was suggested the `svds` should _not_ work with lists
+    @pytest.mark.parametrize('lo_type', (np.asarray, csc_array,
+                                         aslinearoperator))
+    def test_svd_simple(self, A, k, real, transpose, lo_type):
+
+        A = np.asarray(A)
+        A = np.real(A) if real else A
+        A = A.T if transpose else A
+        A2 = lo_type(A)
+
+        # could check for the appropriate errors, but that is tested above
+        if k > min(A.shape):
+            pytest.skip("`k` cannot be greater than `min(A.shape)`")
+        if self.solver != 'propack' and k >= min(A.shape):
+            pytest.skip("Only PROPACK supports complete SVD")
+        if self.solver == 'arpack' and not real and k == min(A.shape) - 1:
+            pytest.skip("#16725")
+
+        atol = 3e-10
+        if self.solver == 'propack':
+            atol = 3e-9  # otherwise test fails on Linux aarch64 (see gh-19855)
+
+        if self.solver == 'lobpcg':
+            with pytest.warns(UserWarning, match="The problem size"):
+                u, s, vh = svds(A2, k, solver=self.solver, rng=0)
+        else:
+            u, s, vh = svds(A2, k, solver=self.solver, rng=0)
+        _check_svds(A, k, u, s, vh, atol=atol)
+
+    @pytest.mark.thread_unsafe
+    def test_svd_linop(self):
+        solver = self.solver
+
+        nmks = [(6, 7, 3),
+                (9, 5, 4),
+                (10, 8, 5)]
+
+        def reorder(args):
+            U, s, VH = args
+            j = np.argsort(s)
+            return U[:, j], s[j], VH[j, :]
+
+        for n, m, k in nmks:
+            # Test svds on a LinearOperator.
+            A = np.random.RandomState(52).randn(n, m)
+            L = CheckingLinearOperator(A)
+
+            if solver == 'propack':
+                v0 = np.ones(n)
+            else:
+                v0 = np.ones(min(A.shape))
+            if solver == 'lobpcg':
+                with pytest.warns(UserWarning, match="The problem size"):
+                    U1, s1, VH1 = reorder(svds(A, k, v0=v0, solver=solver, rng=0))
+                    U2, s2, VH2 = reorder(svds(L, k, v0=v0, solver=solver, rng=0))
+            else:
+                U1, s1, VH1 = reorder(svds(A, k, v0=v0, solver=solver, rng=0))
+                U2, s2, VH2 = reorder(svds(L, k, v0=v0, solver=solver, rng=0))
+
+            assert_allclose(np.abs(U1), np.abs(U2))
+            assert_allclose(s1, s2)
+            assert_allclose(np.abs(VH1), np.abs(VH2))
+            assert_allclose(np.dot(U1, np.dot(np.diag(s1), VH1)),
+                            np.dot(U2, np.dot(np.diag(s2), VH2)))
+
+            # Try again with which="SM".
+            A = np.random.RandomState(1909).randn(n, m)
+            L = CheckingLinearOperator(A)
+
+            # TODO: arpack crashes when v0=v0, which="SM"
+            kwargs = {'v0': v0} if solver not in {None, 'arpack'} else {}
+            if self.solver == 'lobpcg':
+                with pytest.warns(UserWarning, match="The problem size"):
+                    U1, s1, VH1 = reorder(svds(A, k, which="SM", solver=solver,
+                                               rng=0, **kwargs))
+                    U2, s2, VH2 = reorder(svds(L, k, which="SM", solver=solver,
+                                               rng=0, **kwargs))
+            else:
+                U1, s1, VH1 = reorder(svds(A, k, which="SM", solver=solver,
+                                           rng=0, **kwargs))
+                U2, s2, VH2 = reorder(svds(L, k, which="SM", solver=solver,
+                                           rng=0, **kwargs))
+
+            assert_allclose(np.abs(U1), np.abs(U2))
+            assert_allclose(s1 + 1, s2 + 1)
+            assert_allclose(np.abs(VH1), np.abs(VH2))
+            assert_allclose(np.dot(U1, np.dot(np.diag(s1), VH1)),
+                            np.dot(U2, np.dot(np.diag(s2), VH2)))
+
+            if k < min(n, m) - 1:
+                # Complex input and explicit which="LM".
+                for (dt, eps) in [(complex, 1e-7), (np.complex64, 3e-3)]:
+                    rng = np.random.RandomState(1648)
+                    A = (rng.randn(n, m) + 1j * rng.randn(n, m)).astype(dt)
+                    L = CheckingLinearOperator(A)
+
+                    if self.solver == 'lobpcg':
+                        with pytest.warns(UserWarning,
+                                          match="The problem size"):
+                            U1, s1, VH1 = reorder(svds(A, k, which="LM",
+                                                       solver=solver, rng=0))
+                            U2, s2, VH2 = reorder(svds(L, k, which="LM",
+                                                       solver=solver, rng=0))
+                    else:
+                        U1, s1, VH1 = reorder(svds(A, k, which="LM",
+                                                   solver=solver, rng=0))
+                        U2, s2, VH2 = reorder(svds(L, k, which="LM",
+                                                   solver=solver, rng=0))
+
+                    assert_allclose(np.abs(U1), np.abs(U2), rtol=eps)
+                    assert_allclose(s1, s2, rtol=eps)
+                    assert_allclose(np.abs(VH1), np.abs(VH2), rtol=eps)
+                    assert_allclose(np.dot(U1, np.dot(np.diag(s1), VH1)),
+                                    np.dot(U2, np.dot(np.diag(s2), VH2)),
+                                    rtol=eps)
+
+    SHAPES = ((100, 100), (100, 101), (101, 100))
+
+    @pytest.mark.filterwarnings("ignore:Exited at iteration")
+    @pytest.mark.filterwarnings("ignore:Exited postprocessing")
+    @pytest.mark.parametrize("shape", SHAPES)
+    # ARPACK supports only dtype float, complex, or np.float32
+    @pytest.mark.parametrize("dtype", (float, complex, np.float32))
+    def test_small_sigma_sparse(self, shape, dtype):
+        # https://github.com/scipy/scipy/pull/11829
+        solver = self.solver
+        # 2do: PROPACK fails orthogonality of singular vectors
+        # if dtype == complex and self.solver == 'propack':
+        #    pytest.skip("PROPACK unsupported for complex dtype")
+        rng = np.random.default_rng(0)
+        k = 5
+        (m, n) = shape
+        S = random_array(shape=(m, n), density=0.1, rng=rng)
+        if dtype is complex:
+            S = + 1j * random_array(shape=(m, n), density=0.1, rng=rng)
+        e = np.ones(m)
+        e[0:5] *= 1e1 ** np.arange(-5, 0, 1)
+        S = dia_array((e, 0), shape=(m, m)) @ S
+        S = S.astype(dtype)
+        u, s, vh = svds(S, k, which='SM', solver=solver, maxiter=1000, rng=0)
+        c_svd = False  # partial SVD can be different from full SVD
+        _check_svds_n(S, k, u, s, vh, which="SM", check_svd=c_svd, atol=2e-1)
+
+    # --- Test Edge Cases ---
+    # Checks a few edge cases.
+    @pytest.mark.thread_unsafe
+    @pytest.mark.parametrize("shape", ((6, 5), (5, 5), (5, 6)))
+    @pytest.mark.parametrize("dtype", (float, complex))
+    def test_svd_LM_ones_matrix(self, shape, dtype):
+        # Check that svds can deal with matrix_rank less than k in LM mode.
+        k = 3
+        n, m = shape
+        A = np.ones((n, m), dtype=dtype)
+
+        if self.solver == 'lobpcg':
+            with pytest.warns(UserWarning, match="The problem size"):
+                U, s, VH = svds(A, k, solver=self.solver, rng=0)
+        else:
+            U, s, VH = svds(A, k, solver=self.solver, rng=0)
+
+        _check_svds(A, k, U, s, VH, check_usvh_A=True, check_svd=False)
+
+        # Check that the largest singular value is near sqrt(n*m)
+        # and the other singular values have been forced to zero.
+        assert_allclose(np.max(s), np.sqrt(n*m))
+        s = np.array(sorted(s)[:-1]) + 1
+        z = np.ones_like(s)
+        assert_allclose(s, z)
+
+    @pytest.mark.thread_unsafe
+    @pytest.mark.filterwarnings("ignore:k >= N - 1",
+                                reason="needed to demonstrate #16725")
+    @pytest.mark.parametrize("shape", ((3, 4), (4, 4), (4, 3), (4, 2)))
+    @pytest.mark.parametrize("dtype", (float, complex))
+    def test_zero_matrix(self, shape, dtype):
+        # Check that svds can deal with matrices containing only zeros;
+        # see https://github.com/scipy/scipy/issues/3452/
+        # shape = (4, 2) is included because it is the particular case
+        # reported in the issue
+        k = 1
+        n, m = shape
+        A = np.zeros((n, m), dtype=dtype)
+
+        if (self.solver == 'arpack'):
+            pytest.skip('See gh-21110.')
+
+        if (self.solver == 'arpack' and dtype is complex
+                and k == min(A.shape) - 1):
+            pytest.skip("#16725")
+
+        if self.solver == 'propack':
+            pytest.skip("PROPACK failures unrelated to PR #16712")
+
+        if self.solver == 'lobpcg':
+            with pytest.warns(UserWarning, match="The problem size"):
+                U, s, VH = svds(A, k, solver=self.solver, rng=0)
+        else:
+            U, s, VH = svds(A, k, solver=self.solver, rng=0)
+
+        # Check some generic properties of svd.
+        _check_svds(A, k, U, s, VH, check_usvh_A=True, check_svd=False)
+
+        # Check that the singular values are zero.
+        assert_array_equal(s, 0)
+
+    @pytest.mark.parametrize("shape", ((20, 20), (20, 21), (21, 20)))
+    # ARPACK supports only dtype float, complex, or np.float32
+    @pytest.mark.parametrize("dtype", (float, complex, np.float32))
+    @pytest.mark.filterwarnings("ignore:Exited",
+                                reason="Ignore LOBPCG early exit.")
+    def test_small_sigma(self, shape, dtype):
+        rng = np.random.default_rng(179847540)
+        A = rng.random(shape).astype(dtype)
+        u, _, vh = svd(A, full_matrices=False)
+        if dtype == np.float32:
+            e = 10.0
+        else:
+            e = 100.0
+        t = e**(-np.arange(len(vh))).astype(dtype)
+        A = (u*t).dot(vh)
+        k = 4
+        u, s, vh = svds(A, k, solver=self.solver, maxiter=100, rng=0)
+        t = np.sum(s > 0)
+        assert_equal(t, k)
+        # LOBPCG needs larger atol and rtol to pass
+        _check_svds_n(A, k, u, s, vh, atol=1e-3, rtol=1e0, check_svd=False)
+
+    # ARPACK supports only dtype float, complex, or np.float32
+    @pytest.mark.filterwarnings("ignore:The problem size")
+    @pytest.mark.parametrize("dtype", (float, complex, np.float32))
+    def test_small_sigma2(self, dtype):
+        rng = np.random.default_rng(179847540)
+        # create a 10x10 singular matrix with a 4-dim null space
+        dim = 4
+        size = 10
+        x = rng.random((size, size-dim))
+        y = x[:, :dim] * rng.random(dim)
+        mat = np.hstack((x, y))
+        mat = mat.astype(dtype)
+
+        nz = null_space(mat)
+        assert_equal(nz.shape[1], dim)
+
+        # Tolerances atol and rtol adjusted to pass np.float32
+        # Use non-sparse svd
+        u, s, vh = svd(mat)
+        # Singular values are 0:
+        assert_allclose(s[-dim:], 0, atol=1e-6, rtol=1e0)
+        # Smallest right singular vectors in null space:
+        assert_allclose(mat @ vh[-dim:, :].T, 0, atol=1e-6, rtol=1e0)
+
+        # Smallest singular values should be 0
+        sp_mat = csc_array(mat)
+        su, ss, svh = svds(sp_mat, k=dim, which='SM', solver=self.solver, rng=0)
+        # Smallest dim singular values are 0:
+        assert_allclose(ss, 0, atol=1e-5, rtol=1e0)
+        # Smallest singular vectors via svds in null space:
+        n, m = mat.shape
+        if n < m:  # else the assert fails with some libraries unclear why
+            assert_allclose(sp_mat.transpose() @ su, 0, atol=1e-5, rtol=1e0)
+        assert_allclose(sp_mat @ svh.T, 0, atol=1e-5, rtol=1e0)
+
+# --- Perform tests with each solver ---
+
+
+class Test_SVDS_once:
+    @pytest.mark.parametrize("solver", ['ekki', object])
+    def test_svds_input_validation_solver(self, solver):
+        message = "solver must be one of"
+        with pytest.raises(ValueError, match=message):
+            svds(np.ones((3, 4)), k=2, solver=solver, rng=0)
+
+
+class Test_SVDS_ARPACK(SVDSCommonTests):
+
+    def setup_method(self):
+        self.solver = 'arpack'
+
+    @pytest.mark.parametrize("ncv", list(range(-1, 8)) + [4.5, "5"])
+    def test_svds_input_validation_ncv_1(self, ncv):
+        rng = np.random.default_rng(0)
+        A = rng.random((6, 7))
+        k = 3
+        if ncv in {4, 5}:
+            u, s, vh = svds(A, k=k, ncv=ncv, solver=self.solver, rng=0)
+        # partial decomposition, so don't check that u@diag(s)@vh=A;
+        # do check that scipy.sparse.linalg.svds ~ scipy.linalg.svd
+            _check_svds(A, k, u, s, vh)
+        else:
+            message = ("`ncv` must be an integer satisfying")
+            with pytest.raises(ValueError, match=message):
+                svds(A, k=k, ncv=ncv, solver=self.solver, rng=0)
+
+    def test_svds_input_validation_ncv_2(self):
+        # I think the stack trace is reasonable when `ncv` can't be converted
+        # to an int.
+        message = "int() argument must be a"
+        with pytest.raises(TypeError, match=re.escape(message)):
+            svds(np.eye(10), ncv=[], solver=self.solver, rng=0)
+
+        message = "invalid literal for int()"
+        with pytest.raises(ValueError, match=message):
+            svds(np.eye(10), ncv="hi", solver=self.solver, rng=0)
+
+    # I can't see a robust relationship between `ncv` and relevant outputs
+    # (e.g. accuracy, time), so no test of the parameter.
+
+
+class Test_SVDS_LOBPCG(SVDSCommonTests):
+
+    def setup_method(self):
+        self.solver = 'lobpcg'
+
+
+class Test_SVDS_PROPACK(SVDSCommonTests):
+
+    def setup_method(self):
+        self.solver = 'propack'
+
+    def test_svd_LM_ones_matrix(self):
+        message = ("PROPACK does not return orthonormal singular vectors "
+                   "associated with zero singular values.")
+        # There are some other issues with this matrix of all ones, e.g.
+        # `which='sm'` and `k=1` returns the largest singular value
+        pytest.xfail(message)
+
+    def test_svd_LM_zeros_matrix(self):
+        message = ("PROPACK does not return orthonormal singular vectors "
+                   "associated with zero singular values.")
+        pytest.xfail(message)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_expm_multiply.py

@@ -0,0 +1,816 @@
+"""Compute the action of the matrix exponential."""
+from warnings import warn
+
+import numpy as np
+
+import scipy.linalg
+import scipy.sparse.linalg
+from scipy.linalg._decomp_qr import qr
+from scipy.sparse._sputils import is_pydata_spmatrix
+from scipy.sparse.linalg import aslinearoperator
+from scipy.sparse.linalg._interface import IdentityOperator
+from scipy.sparse.linalg._onenormest import onenormest
+
+__all__ = ['expm_multiply']
+
+
+def _exact_inf_norm(A):
+    # A compatibility function which should eventually disappear.
+    if scipy.sparse.issparse(A):
+        return max(abs(A).sum(axis=1).flat)
+    elif is_pydata_spmatrix(A):
+        return max(abs(A).sum(axis=1))
+    else:
+        return np.linalg.norm(A, np.inf)
+
+
+def _exact_1_norm(A):
+    # A compatibility function which should eventually disappear.
+    if scipy.sparse.issparse(A):
+        return max(abs(A).sum(axis=0).flat)
+    elif is_pydata_spmatrix(A):
+        return max(abs(A).sum(axis=0))
+    else:
+        return np.linalg.norm(A, 1)
+
+
+def _trace(A):
+    # A compatibility function which should eventually disappear.
+    if is_pydata_spmatrix(A):
+        return A.to_scipy_sparse().trace()
+    else:
+        return A.trace()
+
+
+def traceest(A, m3, seed=None):
+    """Estimate `np.trace(A)` using `3*m3` matrix-vector products.
+
+    The result is not deterministic.
+
+    Parameters
+    ----------
+    A : LinearOperator
+        Linear operator whose trace will be estimated. Has to be square.
+    m3 : int
+        Number of matrix-vector products divided by 3 used to estimate the
+        trace.
+    seed : optional
+        Seed for `numpy.random.default_rng`.
+        Can be provided to obtain deterministic results.
+
+    Returns
+    -------
+    trace : LinearOperator.dtype
+        Estimate of the trace
+
+    Notes
+    -----
+    This is the Hutch++ algorithm given in [1]_.
+
+    References
+    ----------
+    .. [1] Meyer, Raphael A., Cameron Musco, Christopher Musco, and David P.
+       Woodruff. "Hutch++: Optimal Stochastic Trace Estimation." In Symposium
+       on Simplicity in Algorithms (SOSA), pp. 142-155. Society for Industrial
+       and Applied Mathematics, 2021
+       https://doi.org/10.1137/1.9781611976496.16
+
+    """
+    rng = np.random.default_rng(seed)
+    if len(A.shape) != 2 or A.shape[-1] != A.shape[-2]:
+        raise ValueError("Expected A to be like a square matrix.")
+    n = A.shape[-1]
+    S = rng.choice([-1.0, +1.0], [n, m3])
+    Q, _ = qr(A.matmat(S), overwrite_a=True, mode='economic')
+    trQAQ = np.trace(Q.conj().T @ A.matmat(Q))
+    G = rng.choice([-1, +1], [n, m3])
+    right = G - Q@(Q.conj().T @ G)
+    trGAG = np.trace(right.conj().T @ A.matmat(right))
+    return trQAQ + trGAG/m3
+
+
+def _ident_like(A):
+    # A compatibility function which should eventually disappear.
+    if scipy.sparse.issparse(A):
+        # Creates a sparse matrix in dia format
+        out = scipy.sparse.eye(A.shape[0], A.shape[1], dtype=A.dtype)
+        if scipy.sparse.issparse(A):
+            return out.asformat(A.format)
+        return scipy.sparse.dia_array(out).asformat(A.format)
+    elif is_pydata_spmatrix(A):
+        import sparse
+        return sparse.eye(A.shape[0], A.shape[1], dtype=A.dtype)
+    elif isinstance(A, scipy.sparse.linalg.LinearOperator):
+        return IdentityOperator(A.shape, dtype=A.dtype)
+    else:
+        return np.eye(A.shape[0], A.shape[1], dtype=A.dtype)
+
+
+def expm_multiply(A, B, start=None, stop=None, num=None,
+                  endpoint=None, traceA=None):
+    """
+    Compute the action of the matrix exponential of A on B.
+
+    Parameters
+    ----------
+    A : transposable linear operator
+        The operator whose exponential is of interest.
+    B : ndarray, sparse array
+        The matrix or vector to be multiplied by the matrix exponential of A.
+    start : scalar, optional
+        The starting time point of the sequence.
+    stop : scalar, optional
+        The end time point of the sequence, unless `endpoint` is set to False.
+        In that case, the sequence consists of all but the last of ``num + 1``
+        evenly spaced time points, so that `stop` is excluded.
+        Note that the step size changes when `endpoint` is False.
+    num : int, optional
+        Number of time points to use.
+    endpoint : bool, optional
+        If True, `stop` is the last time point.  Otherwise, it is not included.
+    traceA : scalar, optional
+        Trace of `A`. If not given the trace is estimated for linear operators,
+        or calculated exactly for sparse matrices. It is used to precondition
+        `A`, thus an approximate trace is acceptable.
+        For linear operators, `traceA` should be provided to ensure performance
+        as the estimation is not guaranteed to be reliable for all cases.
+
+        .. versionadded:: 1.9.0
+
+    Returns
+    -------
+    expm_A_B : ndarray
+         The result of the action :math:`e^{t_k A} B`.
+
+    Warns
+    -----
+    UserWarning
+        If `A` is a linear operator and ``traceA=None`` (default).
+
+    Notes
+    -----
+    The optional arguments defining the sequence of evenly spaced time points
+    are compatible with the arguments of `numpy.linspace`.
+
+    The output ndarray shape is somewhat complicated so I explain it here.
+    The ndim of the output could be either 1, 2, or 3.
+    It would be 1 if you are computing the expm action on a single vector
+    at a single time point.
+    It would be 2 if you are computing the expm action on a vector
+    at multiple time points, or if you are computing the expm action
+    on a matrix at a single time point.
+    It would be 3 if you want the action on a matrix with multiple
+    columns at multiple time points.
+    If multiple time points are requested, expm_A_B[0] will always
+    be the action of the expm at the first time point,
+    regardless of whether the action is on a vector or a matrix.
+
+    References
+    ----------
+    .. [1] Awad H. Al-Mohy and Nicholas J. Higham (2011)
+           "Computing the Action of the Matrix Exponential,
+           with an Application to Exponential Integrators."
+           SIAM Journal on Scientific Computing,
+           33 (2). pp. 488-511. ISSN 1064-8275
+           http://eprints.ma.man.ac.uk/1591/
+
+    .. [2] Nicholas J. Higham and Awad H. Al-Mohy (2010)
+           "Computing Matrix Functions."
+           Acta Numerica,
+           19. 159-208. ISSN 0962-4929
+           http://eprints.ma.man.ac.uk/1451/
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import expm, expm_multiply
+    >>> A = csc_array([[1, 0], [0, 1]])
+    >>> A.toarray()
+    array([[1, 0],
+           [0, 1]], dtype=int64)
+    >>> B = np.array([np.exp(-1.), np.exp(-2.)])
+    >>> B
+    array([ 0.36787944,  0.13533528])
+    >>> expm_multiply(A, B, start=1, stop=2, num=3, endpoint=True)
+    array([[ 1.        ,  0.36787944],
+           [ 1.64872127,  0.60653066],
+           [ 2.71828183,  1.        ]])
+    >>> expm(A).dot(B)                  # Verify 1st timestep
+    array([ 1.        ,  0.36787944])
+    >>> expm(1.5*A).dot(B)              # Verify 2nd timestep
+    array([ 1.64872127,  0.60653066])
+    >>> expm(2*A).dot(B)                # Verify 3rd timestep
+    array([ 2.71828183,  1.        ])
+    """
+    if all(arg is None for arg in (start, stop, num, endpoint)):
+        X = _expm_multiply_simple(A, B, traceA=traceA)
+    else:
+        X, status = _expm_multiply_interval(A, B, start, stop, num,
+                                            endpoint, traceA=traceA)
+    return X
+
+
+def _expm_multiply_simple(A, B, t=1.0, traceA=None, balance=False):
+    """
+    Compute the action of the matrix exponential at a single time point.
+
+    Parameters
+    ----------
+    A : transposable linear operator
+        The operator whose exponential is of interest.
+    B : ndarray
+        The matrix to be multiplied by the matrix exponential of A.
+    t : float
+        A time point.
+    traceA : scalar, optional
+        Trace of `A`. If not given the trace is estimated for linear operators,
+        or calculated exactly for sparse matrices. It is used to precondition
+        `A`, thus an approximate trace is acceptable
+    balance : bool
+        Indicates whether or not to apply balancing.
+
+    Returns
+    -------
+    F : ndarray
+        :math:`e^{t A} B`
+
+    Notes
+    -----
+    This is algorithm (3.2) in Al-Mohy and Higham (2011).
+
+    """
+    if balance:
+        raise NotImplementedError
+    if len(A.shape) != 2 or A.shape[0] != A.shape[1]:
+        raise ValueError('expected A to be like a square matrix')
+    if A.shape[1] != B.shape[0]:
+        raise ValueError(f'shapes of matrices A {A.shape} and B {B.shape}'
+                         ' are incompatible')
+    ident = _ident_like(A)
+    is_linear_operator = isinstance(A, scipy.sparse.linalg.LinearOperator)
+    n = A.shape[0]
+    if len(B.shape) == 1:
+        n0 = 1
+    elif len(B.shape) == 2:
+        n0 = B.shape[1]
+    else:
+        raise ValueError('expected B to be like a matrix or a vector')
+    u_d = 2**-53
+    tol = u_d
+    if traceA is None:
+        if is_linear_operator:
+            warn("Trace of LinearOperator not available, it will be estimated."
+                 " Provide `traceA` to ensure performance.", stacklevel=3)
+        # m3=1 is bit arbitrary choice, a more accurate trace (larger m3) might
+        # speed up exponential calculation, but trace estimation is more costly
+        traceA = traceest(A, m3=1) if is_linear_operator else _trace(A)
+    mu = traceA / float(n)
+    A = A - mu * ident
+    A_1_norm = onenormest(A) if is_linear_operator else _exact_1_norm(A)
+    if t*A_1_norm == 0:
+        m_star, s = 0, 1
+    else:
+        ell = 2
+        norm_info = LazyOperatorNormInfo(t*A, A_1_norm=t*A_1_norm, ell=ell)
+        m_star, s = _fragment_3_1(norm_info, n0, tol, ell=ell)
+    return _expm_multiply_simple_core(A, B, t, mu, m_star, s, tol, balance)
+
+
+def _expm_multiply_simple_core(A, B, t, mu, m_star, s, tol=None, balance=False):
+    """
+    A helper function.
+    """
+    if balance:
+        raise NotImplementedError
+    if tol is None:
+        u_d = 2 ** -53
+        tol = u_d
+    F = B
+    eta = np.exp(t*mu / float(s))
+    for i in range(s):
+        c1 = _exact_inf_norm(B)
+        for j in range(m_star):
+            coeff = t / float(s*(j+1))
+            B = coeff * A.dot(B)
+            c2 = _exact_inf_norm(B)
+            F = F + B
+            if c1 + c2 <= tol * _exact_inf_norm(F):
+                break
+            c1 = c2
+        F = eta * F
+        B = F
+    return F
+
+
+# This table helps to compute bounds.
+# They seem to have been difficult to calculate, involving symbolic
+# manipulation of equations, followed by numerical root finding.
+_theta = {
+        # The first 30 values are from table A.3 of Computing Matrix Functions.
+        1: 2.29e-16,
+        2: 2.58e-8,
+        3: 1.39e-5,
+        4: 3.40e-4,
+        5: 2.40e-3,
+        6: 9.07e-3,
+        7: 2.38e-2,
+        8: 5.00e-2,
+        9: 8.96e-2,
+        10: 1.44e-1,
+        # 11
+        11: 2.14e-1,
+        12: 3.00e-1,
+        13: 4.00e-1,
+        14: 5.14e-1,
+        15: 6.41e-1,
+        16: 7.81e-1,
+        17: 9.31e-1,
+        18: 1.09,
+        19: 1.26,
+        20: 1.44,
+        # 21
+        21: 1.62,
+        22: 1.82,
+        23: 2.01,
+        24: 2.22,
+        25: 2.43,
+        26: 2.64,
+        27: 2.86,
+        28: 3.08,
+        29: 3.31,
+        30: 3.54,
+        # The rest are from table 3.1 of
+        # Computing the Action of the Matrix Exponential.
+        35: 4.7,
+        40: 6.0,
+        45: 7.2,
+        50: 8.5,
+        55: 9.9,
+        }
+
+
+def _onenormest_matrix_power(A, p,
+        t=2, itmax=5, compute_v=False, compute_w=False):
+    """
+    Efficiently estimate the 1-norm of A^p.
+
+    Parameters
+    ----------
+    A : ndarray
+        Matrix whose 1-norm of a power is to be computed.
+    p : int
+        Non-negative integer power.
+    t : int, optional
+        A positive parameter controlling the tradeoff between
+        accuracy versus time and memory usage.
+        Larger values take longer and use more memory
+        but give more accurate output.
+    itmax : int, optional
+        Use at most this many iterations.
+    compute_v : bool, optional
+        Request a norm-maximizing linear operator input vector if True.
+    compute_w : bool, optional
+        Request a norm-maximizing linear operator output vector if True.
+
+    Returns
+    -------
+    est : float
+        An underestimate of the 1-norm of the sparse matrix.
+    v : ndarray, optional
+        The vector such that ||Av||_1 == est*||v||_1.
+        It can be thought of as an input to the linear operator
+        that gives an output with particularly large norm.
+    w : ndarray, optional
+        The vector Av which has relatively large 1-norm.
+        It can be thought of as an output of the linear operator
+        that is relatively large in norm compared to the input.
+
+    """
+    #XXX Eventually turn this into an API function in the  _onenormest module,
+    #XXX and remove its underscore,
+    #XXX but wait until expm_multiply goes into scipy.
+    from scipy.sparse.linalg._onenormest import onenormest
+    return onenormest(aslinearoperator(A) ** p)
+
+class LazyOperatorNormInfo:
+    """
+    Information about an operator is lazily computed.
+
+    The information includes the exact 1-norm of the operator,
+    in addition to estimates of 1-norms of powers of the operator.
+    This uses the notation of Computing the Action (2011).
+    This class is specialized enough to probably not be of general interest
+    outside of this module.
+
+    """
+
+    def __init__(self, A, A_1_norm=None, ell=2, scale=1):
+        """
+        Provide the operator and some norm-related information.
+
+        Parameters
+        ----------
+        A : linear operator
+            The operator of interest.
+        A_1_norm : float, optional
+            The exact 1-norm of A.
+        ell : int, optional
+            A technical parameter controlling norm estimation quality.
+        scale : int, optional
+            If specified, return the norms of scale*A instead of A.
+
+        """
+        self._A = A
+        self._A_1_norm = A_1_norm
+        self._ell = ell
+        self._d = {}
+        self._scale = scale
+
+    def set_scale(self,scale):
+        """
+        Set the scale parameter.
+        """
+        self._scale = scale
+
+    def onenorm(self):
+        """
+        Compute the exact 1-norm.
+        """
+        if self._A_1_norm is None:
+            self._A_1_norm = _exact_1_norm(self._A)
+        return self._scale*self._A_1_norm
+
+    def d(self, p):
+        """
+        Lazily estimate :math:`d_p(A) ~= || A^p ||^(1/p)`
+        where :math:`||.||` is the 1-norm.
+        """
+        if p not in self._d:
+            est = _onenormest_matrix_power(self._A, p, self._ell)
+            self._d[p] = est ** (1.0 / p)
+        return self._scale*self._d[p]
+
+    def alpha(self, p):
+        """
+        Lazily compute max(d(p), d(p+1)).
+        """
+        return max(self.d(p), self.d(p+1))
+
+def _compute_cost_div_m(m, p, norm_info):
+    """
+    A helper function for computing bounds.
+
+    This is equation (3.10).
+    It measures cost in terms of the number of required matrix products.
+
+    Parameters
+    ----------
+    m : int
+        A valid key of _theta.
+    p : int
+        A matrix power.
+    norm_info : LazyOperatorNormInfo
+        Information about 1-norms of related operators.
+
+    Returns
+    -------
+    cost_div_m : int
+        Required number of matrix products divided by m.
+
+    """
+    return int(np.ceil(norm_info.alpha(p) / _theta[m]))
+
+
+def _compute_p_max(m_max):
+    """
+    Compute the largest positive integer p such that p*(p-1) <= m_max + 1.
+
+    Do this in a slightly dumb way, but safe and not too slow.
+
+    Parameters
+    ----------
+    m_max : int
+        A count related to bounds.
+
+    """
+    sqrt_m_max = np.sqrt(m_max)
+    p_low = int(np.floor(sqrt_m_max))
+    p_high = int(np.ceil(sqrt_m_max + 1))
+    return max(p for p in range(p_low, p_high+1) if p*(p-1) <= m_max + 1)
+
+
+def _fragment_3_1(norm_info, n0, tol, m_max=55, ell=2):
+    """
+    A helper function for the _expm_multiply_* functions.
+
+    Parameters
+    ----------
+    norm_info : LazyOperatorNormInfo
+        Information about norms of certain linear operators of interest.
+    n0 : int
+        Number of columns in the _expm_multiply_* B matrix.
+    tol : float
+        Expected to be
+        :math:`2^{-24}` for single precision or
+        :math:`2^{-53}` for double precision.
+    m_max : int
+        A value related to a bound.
+    ell : int
+        The number of columns used in the 1-norm approximation.
+        This is usually taken to be small, maybe between 1 and 5.
+
+    Returns
+    -------
+    best_m : int
+        Related to bounds for error control.
+    best_s : int
+        Amount of scaling.
+
+    Notes
+    -----
+    This is code fragment (3.1) in Al-Mohy and Higham (2011).
+    The discussion of default values for m_max and ell
+    is given between the definitions of equation (3.11)
+    and the definition of equation (3.12).
+
+    """
+    if ell < 1:
+        raise ValueError('expected ell to be a positive integer')
+    best_m = None
+    best_s = None
+    if _condition_3_13(norm_info.onenorm(), n0, m_max, ell):
+        for m, theta in _theta.items():
+            s = int(np.ceil(norm_info.onenorm() / theta))
+            if best_m is None or m * s < best_m * best_s:
+                best_m = m
+                best_s = s
+    else:
+        # Equation (3.11).
+        for p in range(2, _compute_p_max(m_max) + 1):
+            for m in range(p*(p-1)-1, m_max+1):
+                if m in _theta:
+                    s = _compute_cost_div_m(m, p, norm_info)
+                    if best_m is None or m * s < best_m * best_s:
+                        best_m = m
+                        best_s = s
+        best_s = max(best_s, 1)
+    return best_m, best_s
+
+
+def _condition_3_13(A_1_norm, n0, m_max, ell):
+    """
+    A helper function for the _expm_multiply_* functions.
+
+    Parameters
+    ----------
+    A_1_norm : float
+        The precomputed 1-norm of A.
+    n0 : int
+        Number of columns in the _expm_multiply_* B matrix.
+    m_max : int
+        A value related to a bound.
+    ell : int
+        The number of columns used in the 1-norm approximation.
+        This is usually taken to be small, maybe between 1 and 5.
+
+    Returns
+    -------
+    value : bool
+        Indicates whether or not the condition has been met.
+
+    Notes
+    -----
+    This is condition (3.13) in Al-Mohy and Higham (2011).
+
+    """
+
+    # This is the rhs of equation (3.12).
+    p_max = _compute_p_max(m_max)
+    a = 2 * ell * p_max * (p_max + 3)
+
+    # Evaluate the condition (3.13).
+    b = _theta[m_max] / float(n0 * m_max)
+    return A_1_norm <= a * b
+
+
+def _expm_multiply_interval(A, B, start=None, stop=None, num=None,
+                            endpoint=None, traceA=None, balance=False,
+                            status_only=False):
+    """
+    Compute the action of the matrix exponential at multiple time points.
+
+    Parameters
+    ----------
+    A : transposable linear operator
+        The operator whose exponential is of interest.
+    B : ndarray
+        The matrix to be multiplied by the matrix exponential of A.
+    start : scalar, optional
+        The starting time point of the sequence.
+    stop : scalar, optional
+        The end time point of the sequence, unless `endpoint` is set to False.
+        In that case, the sequence consists of all but the last of ``num + 1``
+        evenly spaced time points, so that `stop` is excluded.
+        Note that the step size changes when `endpoint` is False.
+    num : int, optional
+        Number of time points to use.
+    traceA : scalar, optional
+        Trace of `A`. If not given the trace is estimated for linear operators,
+        or calculated exactly for sparse matrices. It is used to precondition
+        `A`, thus an approximate trace is acceptable
+    endpoint : bool, optional
+        If True, `stop` is the last time point. Otherwise, it is not included.
+    balance : bool
+        Indicates whether or not to apply balancing.
+    status_only : bool
+        A flag that is set to True for some debugging and testing operations.
+
+    Returns
+    -------
+    F : ndarray
+        :math:`e^{t_k A} B`
+    status : int
+        An integer status for testing and debugging.
+
+    Notes
+    -----
+    This is algorithm (5.2) in Al-Mohy and Higham (2011).
+
+    There seems to be a typo, where line 15 of the algorithm should be
+    moved to line 6.5 (between lines 6 and 7).
+
+    """
+    if balance:
+        raise NotImplementedError
+    if len(A.shape) != 2 or A.shape[0] != A.shape[1]:
+        raise ValueError('expected A to be like a square matrix')
+    if A.shape[1] != B.shape[0]:
+        raise ValueError(f'shapes of matrices A {A.shape} and B {B.shape}'
+                         ' are incompatible')
+    ident = _ident_like(A)
+    is_linear_operator = isinstance(A, scipy.sparse.linalg.LinearOperator)
+    n = A.shape[0]
+    if len(B.shape) == 1:
+        n0 = 1
+    elif len(B.shape) == 2:
+        n0 = B.shape[1]
+    else:
+        raise ValueError('expected B to be like a matrix or a vector')
+    u_d = 2**-53
+    tol = u_d
+    if traceA is None:
+        if is_linear_operator:
+            warn("Trace of LinearOperator not available, it will be estimated."
+                 " Provide `traceA` to ensure performance.", stacklevel=3)
+        # m3=5 is bit arbitrary choice, a more accurate trace (larger m3) might
+        # speed up exponential calculation, but trace estimation is also costly
+        # an educated guess would need to consider the number of time points
+        traceA = traceest(A, m3=5) if is_linear_operator else _trace(A)
+    mu = traceA / float(n)
+
+    # Get the linspace samples, attempting to preserve the linspace defaults.
+    linspace_kwargs = {'retstep': True}
+    if num is not None:
+        linspace_kwargs['num'] = num
+    if endpoint is not None:
+        linspace_kwargs['endpoint'] = endpoint
+    samples, step = np.linspace(start, stop, **linspace_kwargs)
+
+    # Convert the linspace output to the notation used by the publication.
+    nsamples = len(samples)
+    if nsamples < 2:
+        raise ValueError('at least two time points are required')
+    q = nsamples - 1
+    h = step
+    t_0 = samples[0]
+    t_q = samples[q]
+
+    # Define the output ndarray.
+    # Use an ndim=3 shape, such that the last two indices
+    # are the ones that may be involved in level 3 BLAS operations.
+    X_shape = (nsamples,) + B.shape
+    X = np.empty(X_shape, dtype=np.result_type(A.dtype, B.dtype, float))
+    t = t_q - t_0
+    A = A - mu * ident
+    A_1_norm = onenormest(A) if is_linear_operator else _exact_1_norm(A)
+    ell = 2
+    norm_info = LazyOperatorNormInfo(t*A, A_1_norm=t*A_1_norm, ell=ell)
+    if t*A_1_norm == 0:
+        m_star, s = 0, 1
+    else:
+        m_star, s = _fragment_3_1(norm_info, n0, tol, ell=ell)
+
+    # Compute the expm action up to the initial time point.
+    action_t0 = _expm_multiply_simple_core(A, B, t_0, mu, m_star, s)
+    if scipy.sparse.issparse(action_t0):
+        action_t0 = action_t0.toarray()
+    elif is_pydata_spmatrix(action_t0):
+        action_t0 = action_t0.todense()
+    X[0] = action_t0
+
+    # Compute the expm action at the rest of the time points.
+    if q <= s:
+        if status_only:
+            return 0
+        else:
+            return _expm_multiply_interval_core_0(A, X,
+                    h, mu, q, norm_info, tol, ell,n0)
+    elif not (q % s):
+        if status_only:
+            return 1
+        else:
+            return _expm_multiply_interval_core_1(A, X,
+                    h, mu, m_star, s, q, tol)
+    elif (q % s):
+        if status_only:
+            return 2
+        else:
+            return _expm_multiply_interval_core_2(A, X,
+                    h, mu, m_star, s, q, tol)
+    else:
+        raise Exception('internal error')
+
+
+def _expm_multiply_interval_core_0(A, X, h, mu, q, norm_info, tol, ell, n0):
+    """
+    A helper function, for the case q <= s.
+    """
+
+    # Compute the new values of m_star and s which should be applied
+    # over intervals of size t/q
+    if norm_info.onenorm() == 0:
+        m_star, s = 0, 1
+    else:
+        norm_info.set_scale(1./q)
+        m_star, s = _fragment_3_1(norm_info, n0, tol, ell=ell)
+        norm_info.set_scale(1)
+
+    for k in range(q):
+        X[k+1] = _expm_multiply_simple_core(A, X[k], h, mu, m_star, s)
+    return X, 0
+
+
+def _expm_multiply_interval_core_1(A, X, h, mu, m_star, s, q, tol):
+    """
+    A helper function, for the case q > s and q % s == 0.
+    """
+    d = q // s
+    input_shape = X.shape[1:]
+    K_shape = (m_star + 1, ) + input_shape
+    K = np.empty(K_shape, dtype=X.dtype)
+    for i in range(s):
+        Z = X[i*d]
+        K[0] = Z
+        high_p = 0
+        for k in range(1, d+1):
+            F = K[0]
+            c1 = _exact_inf_norm(F)
+            for p in range(1, m_star+1):
+                if p > high_p:
+                    K[p] = h * A.dot(K[p-1]) / float(p)
+                coeff = float(pow(k, p))
+                F = F + coeff * K[p]
+                inf_norm_K_p_1 = _exact_inf_norm(K[p])
+                c2 = coeff * inf_norm_K_p_1
+                if c1 + c2 <= tol * _exact_inf_norm(F):
+                    break
+                c1 = c2
+            X[k + i*d] = np.exp(k*h*mu) * F
+    return X, 1
+
+
+def _expm_multiply_interval_core_2(A, X, h, mu, m_star, s, q, tol):
+    """
+    A helper function, for the case q > s and q % s > 0.
+    """
+    d = q // s
+    j = q // d
+    r = q - d * j
+    input_shape = X.shape[1:]
+    K_shape = (m_star + 1, ) + input_shape
+    K = np.empty(K_shape, dtype=X.dtype)
+    for i in range(j + 1):
+        Z = X[i*d]
+        K[0] = Z
+        high_p = 0
+        if i < j:
+            effective_d = d
+        else:
+            effective_d = r
+        for k in range(1, effective_d+1):
+            F = K[0]
+            c1 = _exact_inf_norm(F)
+            for p in range(1, m_star+1):
+                if p == high_p + 1:
+                    K[p] = h * A.dot(K[p-1]) / float(p)
+                    high_p = p
+                coeff = float(pow(k, p))
+                F = F + coeff * K[p]
+                inf_norm_K_p_1 = _exact_inf_norm(K[p])
+                c2 = coeff * inf_norm_K_p_1
+                if c1 + c2 <= tol * _exact_inf_norm(F):
+                    break
+                c1 = c2
+            X[k + i*d] = np.exp(k*h*mu) * F
+    return X, 2

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_interface.py

@@ -0,0 +1,921 @@
+"""Abstract linear algebra library.
+
+This module defines a class hierarchy that implements a kind of "lazy"
+matrix representation, called the ``LinearOperator``. It can be used to do
+linear algebra with extremely large sparse or structured matrices, without
+representing those explicitly in memory. Such matrices can be added,
+multiplied, transposed, etc.
+
+As a motivating example, suppose you want have a matrix where almost all of
+the elements have the value one. The standard sparse matrix representation
+skips the storage of zeros, but not ones. By contrast, a LinearOperator is
+able to represent such matrices efficiently. First, we need a compact way to
+represent an all-ones matrix::
+
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg._interface import LinearOperator
+    >>> class Ones(LinearOperator):
+    ...     def __init__(self, shape):
+    ...         super().__init__(dtype=None, shape=shape)
+    ...     def _matvec(self, x):
+    ...         return np.repeat(x.sum(), self.shape[0])
+
+Instances of this class emulate ``np.ones(shape)``, but using a constant
+amount of storage, independent of ``shape``. The ``_matvec`` method specifies
+how this linear operator multiplies with (operates on) a vector. We can now
+add this operator to a sparse matrix that stores only offsets from one::
+
+    >>> from scipy.sparse.linalg._interface import aslinearoperator
+    >>> from scipy.sparse import csr_array
+    >>> offsets = csr_array([[1, 0, 2], [0, -1, 0], [0, 0, 3]])
+    >>> A = aslinearoperator(offsets) + Ones(offsets.shape)
+    >>> A.dot([1, 2, 3])
+    array([13,  4, 15])
+
+The result is the same as that given by its dense, explicitly-stored
+counterpart::
+
+    >>> (np.ones(A.shape, A.dtype) + offsets.toarray()).dot([1, 2, 3])
+    array([13,  4, 15])
+
+Several algorithms in the ``scipy.sparse`` library are able to operate on
+``LinearOperator`` instances.
+"""
+
+import warnings
+
+import numpy as np
+
+from scipy.sparse import issparse
+from scipy.sparse._sputils import isshape, isintlike, asmatrix, is_pydata_spmatrix
+
+__all__ = ['LinearOperator', 'aslinearoperator']
+
+
+class LinearOperator:
+    """Common interface for performing matrix vector products
+
+    Many iterative methods (e.g. cg, gmres) do not need to know the
+    individual entries of a matrix to solve a linear system A@x=b.
+    Such solvers only require the computation of matrix vector
+    products, A@v where v is a dense vector.  This class serves as
+    an abstract interface between iterative solvers and matrix-like
+    objects.
+
+    To construct a concrete LinearOperator, either pass appropriate
+    callables to the constructor of this class, or subclass it.
+
+    A subclass must implement either one of the methods ``_matvec``
+    and ``_matmat``, and the attributes/properties ``shape`` (pair of
+    integers) and ``dtype`` (may be None). It may call the ``__init__``
+    on this class to have these attributes validated. Implementing
+    ``_matvec`` automatically implements ``_matmat`` (using a naive
+    algorithm) and vice-versa.
+
+    Optionally, a subclass may implement ``_rmatvec`` or ``_adjoint``
+    to implement the Hermitian adjoint (conjugate transpose). As with
+    ``_matvec`` and ``_matmat``, implementing either ``_rmatvec`` or
+    ``_adjoint`` implements the other automatically. Implementing
+    ``_adjoint`` is preferable; ``_rmatvec`` is mostly there for
+    backwards compatibility.
+
+    Parameters
+    ----------
+    shape : tuple
+        Matrix dimensions (M, N).
+    matvec : callable f(v)
+        Returns returns A @ v.
+    rmatvec : callable f(v)
+        Returns A^H @ v, where A^H is the conjugate transpose of A.
+    matmat : callable f(V)
+        Returns A @ V, where V is a dense matrix with dimensions (N, K).
+    dtype : dtype
+        Data type of the matrix.
+    rmatmat : callable f(V)
+        Returns A^H @ V, where V is a dense matrix with dimensions (M, K).
+
+    Attributes
+    ----------
+    args : tuple
+        For linear operators describing products etc. of other linear
+        operators, the operands of the binary operation.
+    ndim : int
+        Number of dimensions (this is always 2)
+
+    See Also
+    --------
+    aslinearoperator : Construct LinearOperators
+
+    Notes
+    -----
+    The user-defined matvec() function must properly handle the case
+    where v has shape (N,) as well as the (N,1) case.  The shape of
+    the return type is handled internally by LinearOperator.
+
+    It is highly recommended to explicitly specify the `dtype`, otherwise
+    it is determined automatically at the cost of a single matvec application
+    on `int8` zero vector using the promoted `dtype` of the output.
+    Python `int` could be difficult to automatically cast to numpy integers
+    in the definition of the `matvec` so the determination may be inaccurate.
+    It is assumed that `matmat`, `rmatvec`, and `rmatmat` would result in
+    the same dtype of the output given an `int8` input as `matvec`.
+
+    LinearOperator instances can also be multiplied, added with each
+    other and exponentiated, all lazily: the result of these operations
+    is always a new, composite LinearOperator, that defers linear
+    operations to the original operators and combines the results.
+
+    More details regarding how to subclass a LinearOperator and several
+    examples of concrete LinearOperator instances can be found in the
+    external project `PyLops <https://pylops.readthedocs.io>`_.
+
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg import LinearOperator
+    >>> def mv(v):
+    ...     return np.array([2*v[0], 3*v[1]])
+    ...
+    >>> A = LinearOperator((2,2), matvec=mv)
+    >>> A
+    <2x2 _CustomLinearOperator with dtype=int8>
+    >>> A.matvec(np.ones(2))
+    array([ 2.,  3.])
+    >>> A @ np.ones(2)
+    array([ 2.,  3.])
+
+    """
+
+    ndim = 2
+    # Necessary for right matmul with numpy arrays.
+    __array_ufunc__ = None
+
+    def __new__(cls, *args, **kwargs):
+        if cls is LinearOperator:
+            # Operate as _CustomLinearOperator factory.
+            return super().__new__(_CustomLinearOperator)
+        else:
+            obj = super().__new__(cls)
+
+            if (type(obj)._matvec == LinearOperator._matvec
+                    and type(obj)._matmat == LinearOperator._matmat):
+                warnings.warn("LinearOperator subclass should implement"
+                              " at least one of _matvec and _matmat.",
+                              category=RuntimeWarning, stacklevel=2)
+
+            return obj
+
+    def __init__(self, dtype, shape):
+        """Initialize this LinearOperator.
+
+        To be called by subclasses. ``dtype`` may be None; ``shape`` should
+        be convertible to a length-2 tuple.
+        """
+        if dtype is not None:
+            dtype = np.dtype(dtype)
+
+        shape = tuple(shape)
+        if not isshape(shape):
+            raise ValueError(f"invalid shape {shape!r} (must be 2-d)")
+
+        self.dtype = dtype
+        self.shape = shape
+
+    def _init_dtype(self):
+        """Determine the dtype by executing `matvec` on an `int8` test vector.
+
+        In `np.promote_types` hierarchy, the type `int8` is the smallest,
+        so we call `matvec` on `int8` and use the promoted dtype of the output
+        to set the default `dtype` of the `LinearOperator`.
+        We assume that `matmat`, `rmatvec`, and `rmatmat` would result in
+        the same dtype of the output given an `int8` input as `matvec`.
+
+        Called from subclasses at the end of the __init__ routine.
+        """
+        if self.dtype is None:
+            v = np.zeros(self.shape[-1], dtype=np.int8)
+            try:
+                matvec_v = np.asarray(self.matvec(v))
+            except OverflowError:
+                # Python large `int` promoted to `np.int64`or `np.int32`
+                self.dtype = np.dtype(int)
+            else:
+                self.dtype = matvec_v.dtype
+
+    def _matmat(self, X):
+        """Default matrix-matrix multiplication handler.
+
+        Falls back on the user-defined _matvec method, so defining that will
+        define matrix multiplication (though in a very suboptimal way).
+        """
+
+        return np.hstack([self.matvec(col.reshape(-1,1)) for col in X.T])
+
+    def _matvec(self, x):
+        """Default matrix-vector multiplication handler.
+
+        If self is a linear operator of shape (M, N), then this method will
+        be called on a shape (N,) or (N, 1) ndarray, and should return a
+        shape (M,) or (M, 1) ndarray.
+
+        This default implementation falls back on _matmat, so defining that
+        will define matrix-vector multiplication as well.
+        """
+        return self.matmat(x.reshape(-1, 1))
+
+    def matvec(self, x):
+        """Matrix-vector multiplication.
+
+        Performs the operation y=A@x where A is an MxN linear
+        operator and x is a column vector or 1-d array.
+
+        Parameters
+        ----------
+        x : {matrix, ndarray}
+            An array with shape (N,) or (N,1).
+
+        Returns
+        -------
+        y : {matrix, ndarray}
+            A matrix or ndarray with shape (M,) or (M,1) depending
+            on the type and shape of the x argument.
+
+        Notes
+        -----
+        This matvec wraps the user-specified matvec routine or overridden
+        _matvec method to ensure that y has the correct shape and type.
+
+        """
+
+        x = np.asanyarray(x)
+
+        M,N = self.shape
+
+        if x.shape != (N,) and x.shape != (N,1):
+            raise ValueError('dimension mismatch')
+
+        y = self._matvec(x)
+
+        if isinstance(x, np.matrix):
+            y = asmatrix(y)
+        else:
+            y = np.asarray(y)
+
+        if x.ndim == 1:
+            y = y.reshape(M)
+        elif x.ndim == 2:
+            y = y.reshape(M,1)
+        else:
+            raise ValueError('invalid shape returned by user-defined matvec()')
+
+        return y
+
+    def rmatvec(self, x):
+        """Adjoint matrix-vector multiplication.
+
+        Performs the operation y = A^H @ x where A is an MxN linear
+        operator and x is a column vector or 1-d array.
+
+        Parameters
+        ----------
+        x : {matrix, ndarray}
+            An array with shape (M,) or (M,1).
+
+        Returns
+        -------
+        y : {matrix, ndarray}
+            A matrix or ndarray with shape (N,) or (N,1) depending
+            on the type and shape of the x argument.
+
+        Notes
+        -----
+        This rmatvec wraps the user-specified rmatvec routine or overridden
+        _rmatvec method to ensure that y has the correct shape and type.
+
+        """
+
+        x = np.asanyarray(x)
+
+        M,N = self.shape
+
+        if x.shape != (M,) and x.shape != (M,1):
+            raise ValueError('dimension mismatch')
+
+        y = self._rmatvec(x)
+
+        if isinstance(x, np.matrix):
+            y = asmatrix(y)
+        else:
+            y = np.asarray(y)
+
+        if x.ndim == 1:
+            y = y.reshape(N)
+        elif x.ndim == 2:
+            y = y.reshape(N,1)
+        else:
+            raise ValueError('invalid shape returned by user-defined rmatvec()')
+
+        return y
+
+    def _rmatvec(self, x):
+        """Default implementation of _rmatvec; defers to adjoint."""
+        if type(self)._adjoint == LinearOperator._adjoint:
+            # _adjoint not overridden, prevent infinite recursion
+            if (hasattr(self, "_rmatmat")
+                    and type(self)._rmatmat != LinearOperator._rmatmat):
+                # Try to use _rmatmat as a fallback
+                return self._rmatmat(x.reshape(-1, 1)).reshape(-1)
+            raise NotImplementedError
+        else:
+            return self.H.matvec(x)
+
+    def matmat(self, X):
+        """Matrix-matrix multiplication.
+
+        Performs the operation y=A@X where A is an MxN linear
+        operator and X dense N*K matrix or ndarray.
+
+        Parameters
+        ----------
+        X : {matrix, ndarray}
+            An array with shape (N,K).
+
+        Returns
+        -------
+        Y : {matrix, ndarray}
+            A matrix or ndarray with shape (M,K) depending on
+            the type of the X argument.
+
+        Notes
+        -----
+        This matmat wraps any user-specified matmat routine or overridden
+        _matmat method to ensure that y has the correct type.
+
+        """
+        if not (issparse(X) or is_pydata_spmatrix(X)):
+            X = np.asanyarray(X)
+
+        if X.ndim != 2:
+            raise ValueError(f'expected 2-d ndarray or matrix, not {X.ndim}-d')
+
+        if X.shape[0] != self.shape[1]:
+            raise ValueError(f'dimension mismatch: {self.shape}, {X.shape}')
+
+        try:
+            Y = self._matmat(X)
+        except Exception as e:
+            if issparse(X) or is_pydata_spmatrix(X):
+                raise TypeError(
+                    "Unable to multiply a LinearOperator with a sparse matrix."
+                    " Wrap the matrix in aslinearoperator first."
+                ) from e
+            raise
+
+        if isinstance(Y, np.matrix):
+            Y = asmatrix(Y)
+
+        return Y
+
+    def rmatmat(self, X):
+        """Adjoint matrix-matrix multiplication.
+
+        Performs the operation y = A^H @ x where A is an MxN linear
+        operator and x is a column vector or 1-d array, or 2-d array.
+        The default implementation defers to the adjoint.
+
+        Parameters
+        ----------
+        X : {matrix, ndarray}
+            A matrix or 2D array.
+
+        Returns
+        -------
+        Y : {matrix, ndarray}
+            A matrix or 2D array depending on the type of the input.
+
+        Notes
+        -----
+        This rmatmat wraps the user-specified rmatmat routine.
+
+        """
+        if not (issparse(X) or is_pydata_spmatrix(X)):
+            X = np.asanyarray(X)
+
+        if X.ndim != 2:
+            raise ValueError('expected 2-d ndarray or matrix, not %d-d'
+                             % X.ndim)
+
+        if X.shape[0] != self.shape[0]:
+            raise ValueError(f'dimension mismatch: {self.shape}, {X.shape}')
+
+        try:
+            Y = self._rmatmat(X)
+        except Exception as e:
+            if issparse(X) or is_pydata_spmatrix(X):
+                raise TypeError(
+                    "Unable to multiply a LinearOperator with a sparse matrix."
+                    " Wrap the matrix in aslinearoperator() first."
+                ) from e
+            raise
+
+        if isinstance(Y, np.matrix):
+            Y = asmatrix(Y)
+        return Y
+
+    def _rmatmat(self, X):
+        """Default implementation of _rmatmat defers to rmatvec or adjoint."""
+        if type(self)._adjoint == LinearOperator._adjoint:
+            return np.hstack([self.rmatvec(col.reshape(-1, 1)) for col in X.T])
+        else:
+            return self.H.matmat(X)
+
+    def __call__(self, x):
+        return self@x
+
+    def __mul__(self, x):
+        return self.dot(x)
+
+    def __truediv__(self, other):
+        if not np.isscalar(other):
+            raise ValueError("Can only divide a linear operator by a scalar.")
+
+        return _ScaledLinearOperator(self, 1.0/other)
+
+    def dot(self, x):
+        """Matrix-matrix or matrix-vector multiplication.
+
+        Parameters
+        ----------
+        x : array_like
+            1-d or 2-d array, representing a vector or matrix.
+
+        Returns
+        -------
+        Ax : array
+            1-d or 2-d array (depending on the shape of x) that represents
+            the result of applying this linear operator on x.
+
+        """
+        if isinstance(x, LinearOperator):
+            return _ProductLinearOperator(self, x)
+        elif np.isscalar(x):
+            return _ScaledLinearOperator(self, x)
+        else:
+            if not issparse(x) and not is_pydata_spmatrix(x):
+                # Sparse matrices shouldn't be converted to numpy arrays.
+                x = np.asarray(x)
+
+            if x.ndim == 1 or x.ndim == 2 and x.shape[1] == 1:
+                return self.matvec(x)
+            elif x.ndim == 2:
+                return self.matmat(x)
+            else:
+                raise ValueError(f'expected 1-d or 2-d array or matrix, got {x!r}')
+
+    def __matmul__(self, other):
+        if np.isscalar(other):
+            raise ValueError("Scalar operands are not allowed, "
+                             "use '*' instead")
+        return self.__mul__(other)
+
+    def __rmatmul__(self, other):
+        if np.isscalar(other):
+            raise ValueError("Scalar operands are not allowed, "
+                             "use '*' instead")
+        return self.__rmul__(other)
+
+    def __rmul__(self, x):
+        if np.isscalar(x):
+            return _ScaledLinearOperator(self, x)
+        else:
+            return self._rdot(x)
+
+    def _rdot(self, x):
+        """Matrix-matrix or matrix-vector multiplication from the right.
+
+        Parameters
+        ----------
+        x : array_like
+            1-d or 2-d array, representing a vector or matrix.
+
+        Returns
+        -------
+        xA : array
+            1-d or 2-d array (depending on the shape of x) that represents
+            the result of applying this linear operator on x from the right.
+
+        Notes
+        -----
+        This is copied from dot to implement right multiplication.
+        """
+        if isinstance(x, LinearOperator):
+            return _ProductLinearOperator(x, self)
+        elif np.isscalar(x):
+            return _ScaledLinearOperator(self, x)
+        else:
+            if not issparse(x) and not is_pydata_spmatrix(x):
+                # Sparse matrices shouldn't be converted to numpy arrays.
+                x = np.asarray(x)
+
+            # We use transpose instead of rmatvec/rmatmat to avoid
+            # unnecessary complex conjugation if possible.
+            if x.ndim == 1 or x.ndim == 2 and x.shape[0] == 1:
+                return self.T.matvec(x.T).T
+            elif x.ndim == 2:
+                return self.T.matmat(x.T).T
+            else:
+                raise ValueError(f'expected 1-d or 2-d array or matrix, got {x!r}')
+
+    def __pow__(self, p):
+        if np.isscalar(p):
+            return _PowerLinearOperator(self, p)
+        else:
+            return NotImplemented
+
+    def __add__(self, x):
+        if isinstance(x, LinearOperator):
+            return _SumLinearOperator(self, x)
+        else:
+            return NotImplemented
+
+    def __neg__(self):
+        return _ScaledLinearOperator(self, -1)
+
+    def __sub__(self, x):
+        return self.__add__(-x)
+
+    def __repr__(self):
+        M,N = self.shape
+        if self.dtype is None:
+            dt = 'unspecified dtype'
+        else:
+            dt = 'dtype=' + str(self.dtype)
+
+        return '<%dx%d %s with %s>' % (M, N, self.__class__.__name__, dt)
+
+    def adjoint(self):
+        """Hermitian adjoint.
+
+        Returns the Hermitian adjoint of self, aka the Hermitian
+        conjugate or Hermitian transpose. For a complex matrix, the
+        Hermitian adjoint is equal to the conjugate transpose.
+
+        Can be abbreviated self.H instead of self.adjoint().
+
+        Returns
+        -------
+        A_H : LinearOperator
+            Hermitian adjoint of self.
+        """
+        return self._adjoint()
+
+    H = property(adjoint)
+
+    def transpose(self):
+        """Transpose this linear operator.
+
+        Returns a LinearOperator that represents the transpose of this one.
+        Can be abbreviated self.T instead of self.transpose().
+        """
+        return self._transpose()
+
+    T = property(transpose)
+
+    def _adjoint(self):
+        """Default implementation of _adjoint; defers to rmatvec."""
+        return _AdjointLinearOperator(self)
+
+    def _transpose(self):
+        """ Default implementation of _transpose; defers to rmatvec + conj"""
+        return _TransposedLinearOperator(self)
+
+
+class _CustomLinearOperator(LinearOperator):
+    """Linear operator defined in terms of user-specified operations."""
+
+    def __init__(self, shape, matvec, rmatvec=None, matmat=None,
+                 dtype=None, rmatmat=None):
+        super().__init__(dtype, shape)
+
+        self.args = ()
+
+        self.__matvec_impl = matvec
+        self.__rmatvec_impl = rmatvec
+        self.__rmatmat_impl = rmatmat
+        self.__matmat_impl = matmat
+
+        self._init_dtype()
+
+    def _matmat(self, X):
+        if self.__matmat_impl is not None:
+            return self.__matmat_impl(X)
+        else:
+            return super()._matmat(X)
+
+    def _matvec(self, x):
+        return self.__matvec_impl(x)
+
+    def _rmatvec(self, x):
+        func = self.__rmatvec_impl
+        if func is None:
+            raise NotImplementedError("rmatvec is not defined")
+        return self.__rmatvec_impl(x)
+
+    def _rmatmat(self, X):
+        if self.__rmatmat_impl is not None:
+            return self.__rmatmat_impl(X)
+        else:
+            return super()._rmatmat(X)
+
+    def _adjoint(self):
+        return _CustomLinearOperator(shape=(self.shape[1], self.shape[0]),
+                                     matvec=self.__rmatvec_impl,
+                                     rmatvec=self.__matvec_impl,
+                                     matmat=self.__rmatmat_impl,
+                                     rmatmat=self.__matmat_impl,
+                                     dtype=self.dtype)
+
+
+class _AdjointLinearOperator(LinearOperator):
+    """Adjoint of arbitrary Linear Operator"""
+
+    def __init__(self, A):
+        shape = (A.shape[1], A.shape[0])
+        super().__init__(dtype=A.dtype, shape=shape)
+        self.A = A
+        self.args = (A,)
+
+    def _matvec(self, x):
+        return self.A._rmatvec(x)
+
+    def _rmatvec(self, x):
+        return self.A._matvec(x)
+
+    def _matmat(self, x):
+        return self.A._rmatmat(x)
+
+    def _rmatmat(self, x):
+        return self.A._matmat(x)
+
+class _TransposedLinearOperator(LinearOperator):
+    """Transposition of arbitrary Linear Operator"""
+
+    def __init__(self, A):
+        shape = (A.shape[1], A.shape[0])
+        super().__init__(dtype=A.dtype, shape=shape)
+        self.A = A
+        self.args = (A,)
+
+    def _matvec(self, x):
+        # NB. np.conj works also on sparse matrices
+        return np.conj(self.A._rmatvec(np.conj(x)))
+
+    def _rmatvec(self, x):
+        return np.conj(self.A._matvec(np.conj(x)))
+
+    def _matmat(self, x):
+        # NB. np.conj works also on sparse matrices
+        return np.conj(self.A._rmatmat(np.conj(x)))
+
+    def _rmatmat(self, x):
+        return np.conj(self.A._matmat(np.conj(x)))
+
+def _get_dtype(operators, dtypes=None):
+    if dtypes is None:
+        dtypes = []
+    for obj in operators:
+        if obj is not None and hasattr(obj, 'dtype'):
+            dtypes.append(obj.dtype)
+    return np.result_type(*dtypes)
+
+
+class _SumLinearOperator(LinearOperator):
+    def __init__(self, A, B):
+        if not isinstance(A, LinearOperator) or \
+                not isinstance(B, LinearOperator):
+            raise ValueError('both operands have to be a LinearOperator')
+        if A.shape != B.shape:
+            raise ValueError(f'cannot add {A} and {B}: shape mismatch')
+        self.args = (A, B)
+        super().__init__(_get_dtype([A, B]), A.shape)
+
+    def _matvec(self, x):
+        return self.args[0].matvec(x) + self.args[1].matvec(x)
+
+    def _rmatvec(self, x):
+        return self.args[0].rmatvec(x) + self.args[1].rmatvec(x)
+
+    def _rmatmat(self, x):
+        return self.args[0].rmatmat(x) + self.args[1].rmatmat(x)
+
+    def _matmat(self, x):
+        return self.args[0].matmat(x) + self.args[1].matmat(x)
+
+    def _adjoint(self):
+        A, B = self.args
+        return A.H + B.H
+
+
+class _ProductLinearOperator(LinearOperator):
+    def __init__(self, A, B):
+        if not isinstance(A, LinearOperator) or \
+                not isinstance(B, LinearOperator):
+            raise ValueError('both operands have to be a LinearOperator')
+        if A.shape[1] != B.shape[0]:
+            raise ValueError(f'cannot multiply {A} and {B}: shape mismatch')
+        super().__init__(_get_dtype([A, B]),
+                                                     (A.shape[0], B.shape[1]))
+        self.args = (A, B)
+
+    def _matvec(self, x):
+        return self.args[0].matvec(self.args[1].matvec(x))
+
+    def _rmatvec(self, x):
+        return self.args[1].rmatvec(self.args[0].rmatvec(x))
+
+    def _rmatmat(self, x):
+        return self.args[1].rmatmat(self.args[0].rmatmat(x))
+
+    def _matmat(self, x):
+        return self.args[0].matmat(self.args[1].matmat(x))
+
+    def _adjoint(self):
+        A, B = self.args
+        return B.H @ A.H
+
+
+class _ScaledLinearOperator(LinearOperator):
+    def __init__(self, A, alpha):
+        if not isinstance(A, LinearOperator):
+            raise ValueError('LinearOperator expected as A')
+        if not np.isscalar(alpha):
+            raise ValueError('scalar expected as alpha')
+        if isinstance(A, _ScaledLinearOperator):
+            A, alpha_original = A.args
+            # Avoid in-place multiplication so that we don't accidentally mutate
+            # the original prefactor.
+            alpha = alpha * alpha_original
+
+        dtype = _get_dtype([A], [type(alpha)])
+        super().__init__(dtype, A.shape)
+        self.args = (A, alpha)
+        # Note: args[1] is alpha (a scalar), so use `*` below, not `@`
+
+    def _matvec(self, x):
+        return self.args[1] * self.args[0].matvec(x)
+
+    def _rmatvec(self, x):
+        return np.conj(self.args[1]) * self.args[0].rmatvec(x)
+
+    def _rmatmat(self, x):
+        return np.conj(self.args[1]) * self.args[0].rmatmat(x)
+
+    def _matmat(self, x):
+        return self.args[1] * self.args[0].matmat(x)
+
+    def _adjoint(self):
+        A, alpha = self.args
+        return A.H * np.conj(alpha)
+
+
+class _PowerLinearOperator(LinearOperator):
+    def __init__(self, A, p):
+        if not isinstance(A, LinearOperator):
+            raise ValueError('LinearOperator expected as A')
+        if A.shape[0] != A.shape[1]:
+            raise ValueError(f'square LinearOperator expected, got {A!r}')
+        if not isintlike(p) or p < 0:
+            raise ValueError('non-negative integer expected as p')
+
+        super().__init__(_get_dtype([A]), A.shape)
+        self.args = (A, p)
+
+    def _power(self, fun, x):
+        res = np.array(x, copy=True)
+        for i in range(self.args[1]):
+            res = fun(res)
+        return res
+
+    def _matvec(self, x):
+        return self._power(self.args[0].matvec, x)
+
+    def _rmatvec(self, x):
+        return self._power(self.args[0].rmatvec, x)
+
+    def _rmatmat(self, x):
+        return self._power(self.args[0].rmatmat, x)
+
+    def _matmat(self, x):
+        return self._power(self.args[0].matmat, x)
+
+    def _adjoint(self):
+        A, p = self.args
+        return A.H ** p
+
+
+class MatrixLinearOperator(LinearOperator):
+    def __init__(self, A):
+        super().__init__(A.dtype, A.shape)
+        self.A = A
+        self.__adj = None
+        self.args = (A,)
+
+    def _matmat(self, X):
+        return self.A.dot(X)
+
+    def _adjoint(self):
+        if self.__adj is None:
+            self.__adj = _AdjointMatrixOperator(self.A)
+        return self.__adj
+
+
+class _AdjointMatrixOperator(MatrixLinearOperator):
+    def __init__(self, adjoint_array):
+        self.A = adjoint_array.T.conj()
+        self.args = (adjoint_array,)
+        self.shape = adjoint_array.shape[1], adjoint_array.shape[0]
+
+    @property
+    def dtype(self):
+        return self.args[0].dtype
+
+    def _adjoint(self):
+        return MatrixLinearOperator(self.args[0])
+
+
+class IdentityOperator(LinearOperator):
+    def __init__(self, shape, dtype=None):
+        super().__init__(dtype, shape)
+
+    def _matvec(self, x):
+        return x
+
+    def _rmatvec(self, x):
+        return x
+
+    def _rmatmat(self, x):
+        return x
+
+    def _matmat(self, x):
+        return x
+
+    def _adjoint(self):
+        return self
+
+
+def aslinearoperator(A):
+    """Return A as a LinearOperator.
+
+    'A' may be any of the following types:
+     - ndarray
+     - matrix
+     - sparse array (e.g. csr_array, lil_array, etc.)
+     - LinearOperator
+     - An object with .shape and .matvec attributes
+
+    See the LinearOperator documentation for additional information.
+
+    Notes
+    -----
+    If 'A' has no .dtype attribute, the data type is determined by calling
+    :func:`LinearOperator.matvec()` - set the .dtype attribute to prevent this
+    call upon the linear operator creation.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg import aslinearoperator
+    >>> M = np.array([[1,2,3],[4,5,6]], dtype=np.int32)
+    >>> aslinearoperator(M)
+    <2x3 MatrixLinearOperator with dtype=int32>
+    """
+    if isinstance(A, LinearOperator):
+        return A
+
+    elif isinstance(A, np.ndarray) or isinstance(A, np.matrix):
+        if A.ndim > 2:
+            raise ValueError('array must have ndim <= 2')
+        A = np.atleast_2d(np.asarray(A))
+        return MatrixLinearOperator(A)
+
+    elif issparse(A) or is_pydata_spmatrix(A):
+        return MatrixLinearOperator(A)
+
+    else:
+        if hasattr(A, 'shape') and hasattr(A, 'matvec'):
+            rmatvec = None
+            rmatmat = None
+            dtype = None
+
+            if hasattr(A, 'rmatvec'):
+                rmatvec = A.rmatvec
+            if hasattr(A, 'rmatmat'):
+                rmatmat = A.rmatmat
+            if hasattr(A, 'dtype'):
+                dtype = A.dtype
+            return LinearOperator(A.shape, A.matvec, rmatvec=rmatvec,
+                                  rmatmat=rmatmat, dtype=dtype)
+
+        else:
+            raise TypeError('type not understood')

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/__init__.py

@@ -0,0 +1,20 @@
+"Iterative Solvers for Sparse Linear Systems"
+
+#from info import __doc__
+from .iterative import *
+from .minres import minres
+from .lgmres import lgmres
+from .lsqr import lsqr
+from .lsmr import lsmr
+from ._gcrotmk import gcrotmk
+from .tfqmr import tfqmr
+
+__all__ = [
+    'bicg', 'bicgstab', 'cg', 'cgs', 'gcrotmk', 'gmres',
+    'lgmres', 'lsmr', 'lsqr',
+    'minres', 'qmr', 'tfqmr'
+]
+
+from scipy._lib._testutils import PytestTester
+test = PytestTester(__name__)
+del PytestTester

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/_gcrotmk.py

@@ -0,0 +1,503 @@
+# Copyright (C) 2015, Pauli Virtanen <pav@iki.fi>
+# Distributed under the same license as SciPy.
+
+import numpy as np
+from numpy.linalg import LinAlgError
+from scipy.linalg import (get_blas_funcs, qr, solve, svd, qr_insert, lstsq)
+from .iterative import _get_atol_rtol
+from scipy.sparse.linalg._isolve.utils import make_system
+
+
+__all__ = ['gcrotmk']
+
+
+def _fgmres(matvec, v0, m, atol, lpsolve=None, rpsolve=None, cs=(), outer_v=(),
+            prepend_outer_v=False):
+    """
+    FGMRES Arnoldi process, with optional projection or augmentation
+
+    Parameters
+    ----------
+    matvec : callable
+        Operation A*x
+    v0 : ndarray
+        Initial vector, normalized to nrm2(v0) == 1
+    m : int
+        Number of GMRES rounds
+    atol : float
+        Absolute tolerance for early exit
+    lpsolve : callable
+        Left preconditioner L
+    rpsolve : callable
+        Right preconditioner R
+    cs : list of (ndarray, ndarray)
+        Columns of matrices C and U in GCROT
+    outer_v : list of ndarrays
+        Augmentation vectors in LGMRES
+    prepend_outer_v : bool, optional
+        Whether augmentation vectors come before or after
+        Krylov iterates
+
+    Raises
+    ------
+    LinAlgError
+        If nans encountered
+
+    Returns
+    -------
+    Q, R : ndarray
+        QR decomposition of the upper Hessenberg H=QR
+    B : ndarray
+        Projections corresponding to matrix C
+    vs : list of ndarray
+        Columns of matrix V
+    zs : list of ndarray
+        Columns of matrix Z
+    y : ndarray
+        Solution to ||H y - e_1||_2 = min!
+    res : float
+        The final (preconditioned) residual norm
+
+    """
+
+    if lpsolve is None:
+        def lpsolve(x):
+            return x
+    if rpsolve is None:
+        def rpsolve(x):
+            return x
+
+    axpy, dot, scal, nrm2 = get_blas_funcs(['axpy', 'dot', 'scal', 'nrm2'], (v0,))
+
+    vs = [v0]
+    zs = []
+    y = None
+    res = np.nan
+
+    m = m + len(outer_v)
+
+    # Orthogonal projection coefficients
+    B = np.zeros((len(cs), m), dtype=v0.dtype)
+
+    # H is stored in QR factorized form
+    Q = np.ones((1, 1), dtype=v0.dtype)
+    R = np.zeros((1, 0), dtype=v0.dtype)
+
+    eps = np.finfo(v0.dtype).eps
+
+    breakdown = False
+
+    # FGMRES Arnoldi process
+    for j in range(m):
+        # L A Z = C B + V H
+
+        if prepend_outer_v and j < len(outer_v):
+            z, w = outer_v[j]
+        elif prepend_outer_v and j == len(outer_v):
+            z = rpsolve(v0)
+            w = None
+        elif not prepend_outer_v and j >= m - len(outer_v):
+            z, w = outer_v[j - (m - len(outer_v))]
+        else:
+            z = rpsolve(vs[-1])
+            w = None
+
+        if w is None:
+            w = lpsolve(matvec(z))
+        else:
+            # w is clobbered below
+            w = w.copy()
+
+        w_norm = nrm2(w)
+
+        # GCROT projection: L A -> (1 - C C^H) L A
+        # i.e. orthogonalize against C
+        for i, c in enumerate(cs):
+            alpha = dot(c, w)
+            B[i,j] = alpha
+            w = axpy(c, w, c.shape[0], -alpha)  # w -= alpha*c
+
+        # Orthogonalize against V
+        hcur = np.zeros(j+2, dtype=Q.dtype)
+        for i, v in enumerate(vs):
+            alpha = dot(v, w)
+            hcur[i] = alpha
+            w = axpy(v, w, v.shape[0], -alpha)  # w -= alpha*v
+        hcur[i+1] = nrm2(w)
+
+        with np.errstate(over='ignore', divide='ignore'):
+            # Careful with denormals
+            alpha = 1/hcur[-1]
+
+        if np.isfinite(alpha):
+            w = scal(alpha, w)
+
+        if not (hcur[-1] > eps * w_norm):
+            # w essentially in the span of previous vectors,
+            # or we have nans. Bail out after updating the QR
+            # solution.
+            breakdown = True
+
+        vs.append(w)
+        zs.append(z)
+
+        # Arnoldi LSQ problem
+
+        # Add new column to H=Q@R, padding other columns with zeros
+        Q2 = np.zeros((j+2, j+2), dtype=Q.dtype, order='F')
+        Q2[:j+1,:j+1] = Q
+        Q2[j+1,j+1] = 1
+
+        R2 = np.zeros((j+2, j), dtype=R.dtype, order='F')
+        R2[:j+1,:] = R
+
+        Q, R = qr_insert(Q2, R2, hcur, j, which='col',
+                         overwrite_qru=True, check_finite=False)
+
+        # Transformed least squares problem
+        # || Q R y - inner_res_0 * e_1 ||_2 = min!
+        # Since R = [R'; 0], solution is y = inner_res_0 (R')^{-1} (Q^H)[:j,0]
+
+        # Residual is immediately known
+        res = abs(Q[0,-1])
+
+        # Check for termination
+        if res < atol or breakdown:
+            break
+
+    if not np.isfinite(R[j,j]):
+        # nans encountered, bail out
+        raise LinAlgError()
+
+    # -- Get the LSQ problem solution
+
+    # The problem is triangular, but the condition number may be
+    # bad (or in case of breakdown the last diagonal entry may be
+    # zero), so use lstsq instead of trtrs.
+    y, _, _, _, = lstsq(R[:j+1,:j+1], Q[0,:j+1].conj())
+
+    B = B[:,:j+1]
+
+    return Q, R, B, vs, zs, y, res
+
+
+def gcrotmk(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=1000, M=None, callback=None,
+            m=20, k=None, CU=None, discard_C=False, truncate='oldest'):
+    """
+    Solve a matrix equation using flexible GCROT(m,k) algorithm.
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real or complex N-by-N matrix of the linear system.
+        Alternatively, `A` can be a linear operator which can
+        produce ``Ax`` using, e.g.,
+        `LinearOperator`.
+    b : ndarray
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+    x0 : ndarray
+        Starting guess for the solution.
+    rtol, atol : float, optional
+        Parameters for the convergence test. For convergence,
+        ``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
+        The default is ``rtol=1e-5`` and ``atol=0.0``.
+    maxiter : int, optional
+        Maximum number of iterations.  Iteration will stop after maxiter
+        steps even if the specified tolerance has not been achieved. The
+        default is ``1000``.
+    M : {sparse array, ndarray, LinearOperator}, optional
+        Preconditioner for `A`.  The preconditioner should approximate the
+        inverse of `A`. gcrotmk is a 'flexible' algorithm and the preconditioner
+        can vary from iteration to iteration. Effective preconditioning
+        dramatically improves the rate of convergence, which implies that
+        fewer iterations are needed to reach a given error tolerance.
+    callback : function, optional
+        User-supplied function to call after each iteration.  It is called
+        as ``callback(xk)``, where ``xk`` is the current solution vector.
+    m : int, optional
+        Number of inner FGMRES iterations per each outer iteration.
+        Default: 20
+    k : int, optional
+        Number of vectors to carry between inner FGMRES iterations.
+        According to [2]_, good values are around `m`.
+        Default: `m`
+    CU : list of tuples, optional
+        List of tuples ``(c, u)`` which contain the columns of the matrices
+        C and U in the GCROT(m,k) algorithm. For details, see [2]_.
+        The list given and vectors contained in it are modified in-place.
+        If not given, start from empty matrices. The ``c`` elements in the
+        tuples can be ``None``, in which case the vectors are recomputed
+        via ``c = A u`` on start and orthogonalized as described in [3]_.
+    discard_C : bool, optional
+        Discard the C-vectors at the end. Useful if recycling Krylov subspaces
+        for different linear systems.
+    truncate : {'oldest', 'smallest'}, optional
+        Truncation scheme to use. Drop: oldest vectors, or vectors with
+        smallest singular values using the scheme discussed in [1,2].
+        See [2]_ for detailed comparison.
+        Default: 'oldest'
+
+    Returns
+    -------
+    x : ndarray
+        The solution found.
+    info : int
+        Provides convergence information:
+
+        * 0  : successful exit
+        * >0 : convergence to tolerance not achieved, number of iterations
+
+    References
+    ----------
+    .. [1] E. de Sturler, ''Truncation strategies for optimal Krylov subspace
+           methods'', SIAM J. Numer. Anal. 36, 864 (1999).
+    .. [2] J.E. Hicken and D.W. Zingg, ''A simplified and flexible variant
+           of GCROT for solving nonsymmetric linear systems'',
+           SIAM J. Sci. Comput. 32, 172 (2010).
+    .. [3] M.L. Parks, E. de Sturler, G. Mackey, D.D. Johnson, S. Maiti,
+           ''Recycling Krylov subspaces for sequences of linear systems'',
+           SIAM J. Sci. Comput. 28, 1651 (2006).
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import gcrotmk
+    >>> R = np.random.randn(5, 5)
+    >>> A = csc_array(R)
+    >>> b = np.random.randn(5)
+    >>> x, exit_code = gcrotmk(A, b, atol=1e-5)
+    >>> print(exit_code)
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+
+    """
+    A,M,x,b,postprocess = make_system(A,M,x0,b)
+
+    if not np.isfinite(b).all():
+        raise ValueError("RHS must contain only finite numbers")
+
+    if truncate not in ('oldest', 'smallest'):
+        raise ValueError(f"Invalid value for 'truncate': {truncate!r}")
+
+    matvec = A.matvec
+    psolve = M.matvec
+
+    if CU is None:
+        CU = []
+
+    if k is None:
+        k = m
+
+    axpy, dot, scal = None, None, None
+
+    if x0 is None:
+        r = b.copy()
+    else:
+        r = b - matvec(x)
+
+    axpy, dot, scal, nrm2 = get_blas_funcs(['axpy', 'dot', 'scal', 'nrm2'], (x, r))
+
+    b_norm = nrm2(b)
+
+    # we call this to get the right atol/rtol and raise errors as necessary
+    atol, rtol = _get_atol_rtol('gcrotmk', b_norm, atol, rtol)
+
+    if b_norm == 0:
+        x = b
+        return (postprocess(x), 0)
+
+    if discard_C:
+        CU[:] = [(None, u) for c, u in CU]
+
+    # Reorthogonalize old vectors
+    if CU:
+        # Sort already existing vectors to the front
+        CU.sort(key=lambda cu: cu[0] is not None)
+
+        # Fill-in missing ones
+        C = np.empty((A.shape[0], len(CU)), dtype=r.dtype, order='F')
+        us = []
+        j = 0
+        while CU:
+            # More memory-efficient: throw away old vectors as we go
+            c, u = CU.pop(0)
+            if c is None:
+                c = matvec(u)
+            C[:,j] = c
+            j += 1
+            us.append(u)
+
+        # Orthogonalize
+        Q, R, P = qr(C, overwrite_a=True, mode='economic', pivoting=True)
+        del C
+
+        # C := Q
+        cs = list(Q.T)
+
+        # U := U P R^-1,  back-substitution
+        new_us = []
+        for j in range(len(cs)):
+            u = us[P[j]]
+            for i in range(j):
+                u = axpy(us[P[i]], u, u.shape[0], -R[i,j])
+            if abs(R[j,j]) < 1e-12 * abs(R[0,0]):
+                # discard rest of the vectors
+                break
+            u = scal(1.0/R[j,j], u)
+            new_us.append(u)
+
+        # Form the new CU lists
+        CU[:] = list(zip(cs, new_us))[::-1]
+
+    if CU:
+        axpy, dot = get_blas_funcs(['axpy', 'dot'], (r,))
+
+        # Solve first the projection operation with respect to the CU
+        # vectors. This corresponds to modifying the initial guess to
+        # be
+        #
+        #     x' = x + U y
+        #     y = argmin_y || b - A (x + U y) ||^2
+        #
+        # The solution is y = C^H (b - A x)
+        for c, u in CU:
+            yc = dot(c, r)
+            x = axpy(u, x, x.shape[0], yc)
+            r = axpy(c, r, r.shape[0], -yc)
+
+    # GCROT main iteration
+    for j_outer in range(maxiter):
+        # -- callback
+        if callback is not None:
+            callback(x)
+
+        beta = nrm2(r)
+
+        # -- check stopping condition
+        beta_tol = max(atol, rtol * b_norm)
+
+        if beta <= beta_tol and (j_outer > 0 or CU):
+            # recompute residual to avoid rounding error
+            r = b - matvec(x)
+            beta = nrm2(r)
+
+        if beta <= beta_tol:
+            j_outer = -1
+            break
+
+        ml = m + max(k - len(CU), 0)
+
+        cs = [c for c, u in CU]
+
+        try:
+            Q, R, B, vs, zs, y, pres = _fgmres(matvec,
+                                               r/beta,
+                                               ml,
+                                               rpsolve=psolve,
+                                               atol=max(atol, rtol*b_norm)/beta,
+                                               cs=cs)
+            y *= beta
+        except LinAlgError:
+            # Floating point over/underflow, non-finite result from
+            # matmul etc. -- report failure.
+            break
+
+        #
+        # At this point,
+        #
+        #     [A U, A Z] = [C, V] G;   G =  [ I  B ]
+        #                                   [ 0  H ]
+        #
+        # where [C, V] has orthonormal columns, and r = beta v_0. Moreover,
+        #
+        #     || b - A (x + Z y + U q) ||_2 = || r - C B y - V H y - C q ||_2 = min!
+        #
+        # from which y = argmin_y || beta e_1 - H y ||_2, and q = -B y
+        #
+
+        #
+        # GCROT(m,k) update
+        #
+
+        # Define new outer vectors
+
+        # ux := (Z - U B) y
+        ux = zs[0]*y[0]
+        for z, yc in zip(zs[1:], y[1:]):
+            ux = axpy(z, ux, ux.shape[0], yc)  # ux += z*yc
+        by = B.dot(y)
+        for cu, byc in zip(CU, by):
+            c, u = cu
+            ux = axpy(u, ux, ux.shape[0], -byc)  # ux -= u*byc
+
+        # cx := V H y
+        with np.errstate(invalid="ignore"):
+            hy = Q.dot(R.dot(y))
+        cx = vs[0] * hy[0]
+        for v, hyc in zip(vs[1:], hy[1:]):
+            cx = axpy(v, cx, cx.shape[0], hyc)  # cx += v*hyc
+
+        # Normalize cx, maintaining cx = A ux
+        # This new cx is orthogonal to the previous C, by construction
+        try:
+            alpha = 1/nrm2(cx)
+            if not np.isfinite(alpha):
+                raise FloatingPointError()
+        except (FloatingPointError, ZeroDivisionError):
+            # Cannot update, so skip it
+            continue
+
+        cx = scal(alpha, cx)
+        ux = scal(alpha, ux)
+
+        # Update residual and solution
+        gamma = dot(cx, r)
+        r = axpy(cx, r, r.shape[0], -gamma)  # r -= gamma*cx
+        x = axpy(ux, x, x.shape[0], gamma)  # x += gamma*ux
+
+        # Truncate CU
+        if truncate == 'oldest':
+            while len(CU) >= k and CU:
+                del CU[0]
+        elif truncate == 'smallest':
+            if len(CU) >= k and CU:
+                # cf. [1,2]
+                D = solve(R[:-1,:].T, B.T).T
+                W, sigma, V = svd(D)
+
+                # C := C W[:,:k-1],  U := U W[:,:k-1]
+                new_CU = []
+                for j, w in enumerate(W[:,:k-1].T):
+                    c, u = CU[0]
+                    c = c * w[0]
+                    u = u * w[0]
+                    for cup, wp in zip(CU[1:], w[1:]):
+                        cp, up = cup
+                        c = axpy(cp, c, c.shape[0], wp)
+                        u = axpy(up, u, u.shape[0], wp)
+
+                    # Reorthogonalize at the same time; not necessary
+                    # in exact arithmetic, but floating point error
+                    # tends to accumulate here
+                    for cp, up in new_CU:
+                        alpha = dot(cp, c)
+                        c = axpy(cp, c, c.shape[0], -alpha)
+                        u = axpy(up, u, u.shape[0], -alpha)
+                    alpha = nrm2(c)
+                    c = scal(1.0/alpha, c)
+                    u = scal(1.0/alpha, u)
+
+                    new_CU.append((c, u))
+                CU[:] = new_CU
+
+        # Add new vector to CU
+        CU.append((cx, ux))
+
+    # Include the solution vector to the span
+    CU.append((None, x.copy()))
+    if discard_C:
+        CU[:] = [(None, uz) for cz, uz in CU]
+
+    return postprocess(x), j_outer + 1

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/iterative.py

@@ -0,0 +1,1045 @@
+import warnings
+import numpy as np
+from scipy.sparse.linalg._interface import LinearOperator
+from .utils import make_system
+from scipy.linalg import get_lapack_funcs
+
+__all__ = ['bicg', 'bicgstab', 'cg', 'cgs', 'gmres', 'qmr']
+
+
+def _get_atol_rtol(name, b_norm, atol=0., rtol=1e-5):
+    """
+    A helper function to handle tolerance normalization
+    """
+    if atol == 'legacy' or atol is None or atol < 0:
+        msg = (f"'scipy.sparse.linalg.{name}' called with invalid `atol`={atol}; "
+               "if set, `atol` must be a real, non-negative number.")
+        raise ValueError(msg)
+
+    atol = max(float(atol), float(rtol) * float(b_norm))
+
+    return atol, rtol
+
+
+def bicg(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M=None, callback=None):
+    """Use BIConjugate Gradient iteration to solve ``Ax = b``.
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real or complex N-by-N matrix of the linear system.
+        Alternatively, `A` can be a linear operator which can
+        produce ``Ax`` and ``A^T x`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : ndarray
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+    x0 : ndarray
+        Starting guess for the solution.
+    rtol, atol : float, optional
+        Parameters for the convergence test. For convergence,
+        ``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
+        The default is ``atol=0.`` and ``rtol=1e-5``.
+    maxiter : integer
+        Maximum number of iterations.  Iteration will stop after maxiter
+        steps even if the specified tolerance has not been achieved.
+    M : {sparse array, ndarray, LinearOperator}
+        Preconditioner for `A`. It should approximate the
+        inverse of `A` (see Notes). Effective preconditioning dramatically improves the
+        rate of convergence, which implies that fewer iterations are needed
+        to reach a given error tolerance.
+    callback : function
+        User-supplied function to call after each iteration.  It is called
+        as ``callback(xk)``, where ``xk`` is the current solution vector.
+
+    Returns
+    -------
+    x : ndarray
+        The converged solution.
+    info : integer
+        Provides convergence information:
+            0  : successful exit
+            >0 : convergence to tolerance not achieved, number of iterations
+            <0 : parameter breakdown
+
+    Notes
+    -----
+    The preconditioner `M` should be a matrix such that ``M @ A`` has a smaller
+    condition number than `A`, see [1]_ .
+
+    References
+    ----------
+    .. [1] "Preconditioner", Wikipedia, 
+           https://en.wikipedia.org/wiki/Preconditioner
+    .. [2] "Biconjugate gradient method", Wikipedia, 
+           https://en.wikipedia.org/wiki/Biconjugate_gradient_method
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import bicg
+    >>> A = csc_array([[3, 2, 0], [1, -1, 0], [0, 5, 1.]])
+    >>> b = np.array([2., 4., -1.])
+    >>> x, exitCode = bicg(A, b, atol=1e-5)
+    >>> print(exitCode)  # 0 indicates successful convergence
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+    """
+    A, M, x, b, postprocess = make_system(A, M, x0, b)
+    bnrm2 = np.linalg.norm(b)
+
+    atol, _ = _get_atol_rtol('bicg', bnrm2, atol, rtol)
+
+    if bnrm2 == 0:
+        return postprocess(b), 0
+
+    n = len(b)
+    dotprod = np.vdot if np.iscomplexobj(x) else np.dot
+
+    if maxiter is None:
+        maxiter = n*10
+
+    matvec, rmatvec = A.matvec, A.rmatvec
+    psolve, rpsolve = M.matvec, M.rmatvec
+
+    rhotol = np.finfo(x.dtype.char).eps**2
+
+    # Dummy values to initialize vars, silence linter warnings
+    rho_prev, p, ptilde = None, None, None
+
+    r = b - matvec(x) if x.any() else b.copy()
+    rtilde = r.copy()
+
+    for iteration in range(maxiter):
+        if np.linalg.norm(r) < atol:  # Are we done?
+            return postprocess(x), 0
+
+        z = psolve(r)
+        ztilde = rpsolve(rtilde)
+        # order matters in this dot product
+        rho_cur = dotprod(rtilde, z)
+
+        if np.abs(rho_cur) < rhotol:  # Breakdown case
+            return postprocess, -10
+
+        if iteration > 0:
+            beta = rho_cur / rho_prev
+            p *= beta
+            p += z
+            ptilde *= beta.conj()
+            ptilde += ztilde
+        else:  # First spin
+            p = z.copy()
+            ptilde = ztilde.copy()
+
+        q = matvec(p)
+        qtilde = rmatvec(ptilde)
+        rv = dotprod(ptilde, q)
+
+        if rv == 0:
+            return postprocess(x), -11
+
+        alpha = rho_cur / rv
+        x += alpha*p
+        r -= alpha*q
+        rtilde -= alpha.conj()*qtilde
+        rho_prev = rho_cur
+
+        if callback:
+            callback(x)
+
+    else:  # for loop exhausted
+        # Return incomplete progress
+        return postprocess(x), maxiter
+
+
+def bicgstab(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M=None,
+             callback=None):
+    """Use BIConjugate Gradient STABilized iteration to solve ``Ax = b``.
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real or complex N-by-N matrix of the linear system.
+        Alternatively, `A` can be a linear operator which can
+        produce ``Ax`` and ``A^T x`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : ndarray
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+    x0 : ndarray
+        Starting guess for the solution.
+    rtol, atol : float, optional
+        Parameters for the convergence test. For convergence,
+        ``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
+        The default is ``atol=0.`` and ``rtol=1e-5``.
+    maxiter : integer
+        Maximum number of iterations.  Iteration will stop after maxiter
+        steps even if the specified tolerance has not been achieved.
+    M : {sparse array, ndarray, LinearOperator}
+        Preconditioner for `A`. It should approximate the
+        inverse of `A` (see Notes). Effective preconditioning dramatically improves the
+        rate of convergence, which implies that fewer iterations are needed
+        to reach a given error tolerance.
+    callback : function
+        User-supplied function to call after each iteration.  It is called
+        as ``callback(xk)``, where ``xk`` is the current solution vector.
+
+    Returns
+    -------
+    x : ndarray
+        The converged solution.
+    info : integer
+        Provides convergence information:
+            0  : successful exit
+            >0 : convergence to tolerance not achieved, number of iterations
+            <0 : parameter breakdown
+
+    Notes
+    -----
+    The preconditioner `M` should be a matrix such that ``M @ A`` has a smaller
+    condition number than `A`, see [1]_ .
+
+    References
+    ----------
+    .. [1] "Preconditioner", Wikipedia, 
+           https://en.wikipedia.org/wiki/Preconditioner
+    .. [2] "Biconjugate gradient stabilized method", 
+           Wikipedia, https://en.wikipedia.org/wiki/Biconjugate_gradient_stabilized_method
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import bicgstab
+    >>> R = np.array([[4, 2, 0, 1],
+    ...               [3, 0, 0, 2],
+    ...               [0, 1, 1, 1],
+    ...               [0, 2, 1, 0]])
+    >>> A = csc_array(R)
+    >>> b = np.array([-1, -0.5, -1, 2])
+    >>> x, exit_code = bicgstab(A, b, atol=1e-5)
+    >>> print(exit_code)  # 0 indicates successful convergence
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+    """
+    A, M, x, b, postprocess = make_system(A, M, x0, b)
+    bnrm2 = np.linalg.norm(b)
+
+    atol, _ = _get_atol_rtol('bicgstab', bnrm2, atol, rtol)
+
+    if bnrm2 == 0:
+        return postprocess(b), 0
+
+    n = len(b)
+
+    dotprod = np.vdot if np.iscomplexobj(x) else np.dot
+
+    if maxiter is None:
+        maxiter = n*10
+
+    matvec = A.matvec
+    psolve = M.matvec
+
+    # These values make no sense but coming from original Fortran code
+    # sqrt might have been meant instead.
+    rhotol = np.finfo(x.dtype.char).eps**2
+    omegatol = rhotol
+
+    # Dummy values to initialize vars, silence linter warnings
+    rho_prev, omega, alpha, p, v = None, None, None, None, None
+
+    r = b - matvec(x) if x.any() else b.copy()
+    rtilde = r.copy()
+
+    for iteration in range(maxiter):
+        if np.linalg.norm(r) < atol:  # Are we done?
+            return postprocess(x), 0
+
+        rho = dotprod(rtilde, r)
+        if np.abs(rho) < rhotol:  # rho breakdown
+            return postprocess(x), -10
+
+        if iteration > 0:
+            if np.abs(omega) < omegatol:  # omega breakdown
+                return postprocess(x), -11
+
+            beta = (rho / rho_prev) * (alpha / omega)
+            p -= omega*v
+            p *= beta
+            p += r
+        else:  # First spin
+            s = np.empty_like(r)
+            p = r.copy()
+
+        phat = psolve(p)
+        v = matvec(phat)
+        rv = dotprod(rtilde, v)
+        if rv == 0:
+            return postprocess(x), -11
+        alpha = rho / rv
+        r -= alpha*v
+        s[:] = r[:]
+
+        if np.linalg.norm(s) < atol:
+            x += alpha*phat
+            return postprocess(x), 0
+
+        shat = psolve(s)
+        t = matvec(shat)
+        omega = dotprod(t, s) / dotprod(t, t)
+        x += alpha*phat
+        x += omega*shat
+        r -= omega*t
+        rho_prev = rho
+
+        if callback:
+            callback(x)
+
+    else:  # for loop exhausted
+        # Return incomplete progress
+        return postprocess(x), maxiter
+
+
+def cg(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M=None, callback=None):
+    """Use Conjugate Gradient iteration to solve ``Ax = b``.
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real or complex N-by-N matrix of the linear system.
+        `A` must represent a hermitian, positive definite matrix.
+        Alternatively, `A` can be a linear operator which can
+        produce ``Ax`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : ndarray
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+    x0 : ndarray
+        Starting guess for the solution.
+    rtol, atol : float, optional
+        Parameters for the convergence test. For convergence,
+        ``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
+        The default is ``atol=0.`` and ``rtol=1e-5``.
+    maxiter : integer
+        Maximum number of iterations.  Iteration will stop after maxiter
+        steps even if the specified tolerance has not been achieved.
+    M : {sparse array, ndarray, LinearOperator}
+        Preconditioner for `A`. `M` must represent a hermitian, positive definite
+        matrix. It should approximate the inverse of `A` (see Notes).
+        Effective preconditioning dramatically improves the
+        rate of convergence, which implies that fewer iterations are needed
+        to reach a given error tolerance.
+    callback : function
+        User-supplied function to call after each iteration.  It is called
+        as ``callback(xk)``, where ``xk`` is the current solution vector.
+
+    Returns
+    -------
+    x : ndarray
+        The converged solution.
+    info : integer
+        Provides convergence information:
+            0  : successful exit
+            >0 : convergence to tolerance not achieved, number of iterations
+
+    Notes
+    -----
+    The preconditioner `M` should be a matrix such that ``M @ A`` has a smaller
+    condition number than `A`, see [2]_.
+
+    References
+    ----------
+    .. [1] "Conjugate Gradient Method, Wikipedia, 
+           https://en.wikipedia.org/wiki/Conjugate_gradient_method
+    .. [2] "Preconditioner", 
+           Wikipedia, https://en.wikipedia.org/wiki/Preconditioner
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import cg
+    >>> P = np.array([[4, 0, 1, 0],
+    ...               [0, 5, 0, 0],
+    ...               [1, 0, 3, 2],
+    ...               [0, 0, 2, 4]])
+    >>> A = csc_array(P)
+    >>> b = np.array([-1, -0.5, -1, 2])
+    >>> x, exit_code = cg(A, b, atol=1e-5)
+    >>> print(exit_code)    # 0 indicates successful convergence
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+    """
+    A, M, x, b, postprocess = make_system(A, M, x0, b)
+    bnrm2 = np.linalg.norm(b)
+
+    atol, _ = _get_atol_rtol('cg', bnrm2, atol, rtol)
+
+    if bnrm2 == 0:
+        return postprocess(b), 0
+
+    n = len(b)
+
+    if maxiter is None:
+        maxiter = n*10
+
+    dotprod = np.vdot if np.iscomplexobj(x) else np.dot
+
+    matvec = A.matvec
+    psolve = M.matvec
+    r = b - matvec(x) if x.any() else b.copy()
+
+    # Dummy value to initialize var, silences warnings
+    rho_prev, p = None, None
+
+    for iteration in range(maxiter):
+        if np.linalg.norm(r) < atol:  # Are we done?
+            return postprocess(x), 0
+
+        z = psolve(r)
+        rho_cur = dotprod(r, z)
+        if iteration > 0:
+            beta = rho_cur / rho_prev
+            p *= beta
+            p += z
+        else:  # First spin
+            p = np.empty_like(r)
+            p[:] = z[:]
+
+        q = matvec(p)
+        alpha = rho_cur / dotprod(p, q)
+        x += alpha*p
+        r -= alpha*q
+        rho_prev = rho_cur
+
+        if callback:
+            callback(x)
+
+    else:  # for loop exhausted
+        # Return incomplete progress
+        return postprocess(x), maxiter
+
+
+def cgs(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M=None, callback=None):
+    """Use Conjugate Gradient Squared iteration to solve ``Ax = b``.
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real-valued N-by-N matrix of the linear system.
+        Alternatively, `A` can be a linear operator which can
+        produce ``Ax`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : ndarray
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+    x0 : ndarray
+        Starting guess for the solution.
+    rtol, atol : float, optional
+        Parameters for the convergence test. For convergence,
+        ``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
+        The default is ``atol=0.`` and ``rtol=1e-5``.
+    maxiter : integer
+        Maximum number of iterations.  Iteration will stop after maxiter
+        steps even if the specified tolerance has not been achieved.
+    M : {sparse array, ndarray, LinearOperator}
+        Preconditioner for ``A``. It should approximate the
+        inverse of `A` (see Notes). Effective preconditioning dramatically improves the
+        rate of convergence, which implies that fewer iterations are needed
+        to reach a given error tolerance.
+    callback : function
+        User-supplied function to call after each iteration.  It is called
+        as ``callback(xk)``, where ``xk`` is the current solution vector.
+
+    Returns
+    -------
+    x : ndarray
+        The converged solution.
+    info : integer
+        Provides convergence information:
+            0  : successful exit
+            >0 : convergence to tolerance not achieved, number of iterations
+            <0 : parameter breakdown
+
+    Notes
+    -----
+    The preconditioner `M` should be a matrix such that ``M @ A`` has a smaller
+    condition number than `A`, see [1]_.
+
+    References
+    ----------
+    .. [1] "Preconditioner", Wikipedia, 
+           https://en.wikipedia.org/wiki/Preconditioner
+    .. [2] "Conjugate gradient squared", Wikipedia,
+           https://en.wikipedia.org/wiki/Conjugate_gradient_squared_method
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import cgs
+    >>> R = np.array([[4, 2, 0, 1],
+    ...               [3, 0, 0, 2],
+    ...               [0, 1, 1, 1],
+    ...               [0, 2, 1, 0]])
+    >>> A = csc_array(R)
+    >>> b = np.array([-1, -0.5, -1, 2])
+    >>> x, exit_code = cgs(A, b)
+    >>> print(exit_code)  # 0 indicates successful convergence
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+    """
+    A, M, x, b, postprocess = make_system(A, M, x0, b)
+    bnrm2 = np.linalg.norm(b)
+
+    atol, _ = _get_atol_rtol('cgs', bnrm2, atol, rtol)
+
+    if bnrm2 == 0:
+        return postprocess(b), 0
+
+    n = len(b)
+
+    dotprod = np.vdot if np.iscomplexobj(x) else np.dot
+
+    if maxiter is None:
+        maxiter = n*10
+
+    matvec = A.matvec
+    psolve = M.matvec
+
+    rhotol = np.finfo(x.dtype.char).eps**2
+
+    r = b - matvec(x) if x.any() else b.copy()
+
+    rtilde = r.copy()
+    bnorm = np.linalg.norm(b)
+    if bnorm == 0:
+        bnorm = 1
+
+    # Dummy values to initialize vars, silence linter warnings
+    rho_prev, p, u, q = None, None, None, None
+
+    for iteration in range(maxiter):
+        rnorm = np.linalg.norm(r)
+        if rnorm < atol:  # Are we done?
+            return postprocess(x), 0
+
+        rho_cur = dotprod(rtilde, r)
+        if np.abs(rho_cur) < rhotol:  # Breakdown case
+            return postprocess, -10
+
+        if iteration > 0:
+            beta = rho_cur / rho_prev
+
+            # u = r + beta * q
+            # p = u + beta * (q + beta * p);
+            u[:] = r[:]
+            u += beta*q
+
+            p *= beta
+            p += q
+            p *= beta
+            p += u
+
+        else:  # First spin
+            p = r.copy()
+            u = r.copy()
+            q = np.empty_like(r)
+
+        phat = psolve(p)
+        vhat = matvec(phat)
+        rv = dotprod(rtilde, vhat)
+
+        if rv == 0:  # Dot product breakdown
+            return postprocess(x), -11
+
+        alpha = rho_cur / rv
+        q[:] = u[:]
+        q -= alpha*vhat
+        uhat = psolve(u + q)
+        x += alpha*uhat
+
+        # Due to numerical error build-up the actual residual is computed
+        # instead of the following two lines that were in the original
+        # FORTRAN templates, still using a single matvec.
+
+        # qhat = matvec(uhat)
+        # r -= alpha*qhat
+        r = b - matvec(x)
+
+        rho_prev = rho_cur
+
+        if callback:
+            callback(x)
+
+    else:  # for loop exhausted
+        # Return incomplete progress
+        return postprocess(x), maxiter
+
+
+def gmres(A, b, x0=None, *, rtol=1e-5, atol=0., restart=None, maxiter=None, M=None,
+          callback=None, callback_type=None):
+    """
+    Use Generalized Minimal RESidual iteration to solve ``Ax = b``.
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real or complex N-by-N matrix of the linear system.
+        Alternatively, `A` can be a linear operator which can
+        produce ``Ax`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : ndarray
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+    x0 : ndarray
+        Starting guess for the solution (a vector of zeros by default).
+    atol, rtol : float
+        Parameters for the convergence test. For convergence,
+        ``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
+        The default is ``atol=0.`` and ``rtol=1e-5``.
+    restart : int, optional
+        Number of iterations between restarts. Larger values increase
+        iteration cost, but may be necessary for convergence.
+        If omitted, ``min(20, n)`` is used.
+    maxiter : int, optional
+        Maximum number of iterations (restart cycles).  Iteration will stop
+        after maxiter steps even if the specified tolerance has not been
+        achieved. See `callback_type`.
+    M : {sparse array, ndarray, LinearOperator}
+        Inverse of the preconditioner of `A`.  `M` should approximate the
+        inverse of `A` and be easy to solve for (see Notes).  Effective
+        preconditioning dramatically improves the rate of convergence,
+        which implies that fewer iterations are needed to reach a given
+        error tolerance.  By default, no preconditioner is used.
+        In this implementation, left preconditioning is used,
+        and the preconditioned residual is minimized. However, the final
+        convergence is tested with respect to the ``b - A @ x`` residual.
+    callback : function
+        User-supplied function to call after each iteration.  It is called
+        as ``callback(args)``, where ``args`` are selected by `callback_type`.
+    callback_type : {'x', 'pr_norm', 'legacy'}, optional
+        Callback function argument requested:
+          - ``x``: current iterate (ndarray), called on every restart
+          - ``pr_norm``: relative (preconditioned) residual norm (float),
+            called on every inner iteration
+          - ``legacy`` (default): same as ``pr_norm``, but also changes the
+            meaning of `maxiter` to count inner iterations instead of restart
+            cycles.
+
+        This keyword has no effect if `callback` is not set.
+
+    Returns
+    -------
+    x : ndarray
+        The converged solution.
+    info : int
+        Provides convergence information:
+            0  : successful exit
+            >0 : convergence to tolerance not achieved, number of iterations
+
+    See Also
+    --------
+    LinearOperator
+
+    Notes
+    -----
+    A preconditioner, P, is chosen such that P is close to A but easy to solve
+    for. The preconditioner parameter required by this routine is
+    ``M = P^-1``. The inverse should preferably not be calculated
+    explicitly.  Rather, use the following template to produce M::
+
+      # Construct a linear operator that computes P^-1 @ x.
+      import scipy.sparse.linalg as spla
+      M_x = lambda x: spla.spsolve(P, x)
+      M = spla.LinearOperator((n, n), M_x)
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import gmres
+    >>> A = csc_array([[3, 2, 0], [1, -1, 0], [0, 5, 1]], dtype=float)
+    >>> b = np.array([2, 4, -1], dtype=float)
+    >>> x, exitCode = gmres(A, b, atol=1e-5)
+    >>> print(exitCode)            # 0 indicates successful convergence
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+    """
+    if callback is not None and callback_type is None:
+        # Warn about 'callback_type' semantic changes.
+        # Probably should be removed only in far future, Scipy 2.0 or so.
+        msg = ("scipy.sparse.linalg.gmres called without specifying "
+               "`callback_type`. The default value will be changed in"
+               " a future release. For compatibility, specify a value "
+               "for `callback_type` explicitly, e.g., "
+               "``gmres(..., callback_type='pr_norm')``, or to retain the "
+               "old behavior ``gmres(..., callback_type='legacy')``"
+               )
+        warnings.warn(msg, category=DeprecationWarning, stacklevel=3)
+
+    if callback_type is None:
+        callback_type = 'legacy'
+
+    if callback_type not in ('x', 'pr_norm', 'legacy'):
+        raise ValueError(f"Unknown callback_type: {callback_type!r}")
+
+    if callback is None:
+        callback_type = None
+
+    A, M, x, b, postprocess = make_system(A, M, x0, b)
+    matvec = A.matvec
+    psolve = M.matvec
+    n = len(b)
+    bnrm2 = np.linalg.norm(b)
+
+    atol, _ = _get_atol_rtol('gmres', bnrm2, atol, rtol)
+
+    if bnrm2 == 0:
+        return postprocess(b), 0
+
+    eps = np.finfo(x.dtype.char).eps
+
+    dotprod = np.vdot if np.iscomplexobj(x) else np.dot
+
+    if maxiter is None:
+        maxiter = n*10
+
+    if restart is None:
+        restart = 20
+    restart = min(restart, n)
+
+    Mb_nrm2 = np.linalg.norm(psolve(b))
+
+    # ====================================================
+    # =========== Tolerance control from gh-8400 =========
+    # ====================================================
+    # Tolerance passed to GMRESREVCOM applies to the inner
+    # iteration and deals with the left-preconditioned
+    # residual.
+    ptol_max_factor = 1.
+    ptol = Mb_nrm2 * min(ptol_max_factor, atol / bnrm2)
+    presid = 0.
+    # ====================================================
+    lartg = get_lapack_funcs('lartg', dtype=x.dtype)
+
+    # allocate internal variables
+    v = np.empty([restart+1, n], dtype=x.dtype)
+    h = np.zeros([restart, restart+1], dtype=x.dtype)
+    givens = np.zeros([restart, 2], dtype=x.dtype)
+
+    # legacy iteration count
+    inner_iter = 0
+
+    for iteration in range(maxiter):
+        if iteration == 0:
+            r = b - matvec(x) if x.any() else b.copy()
+            if np.linalg.norm(r) < atol:  # Are we done?
+                return postprocess(x), 0
+
+        v[0, :] = psolve(r)
+        tmp = np.linalg.norm(v[0, :])
+        v[0, :] *= (1 / tmp)
+        # RHS of the Hessenberg problem
+        S = np.zeros(restart+1, dtype=x.dtype)
+        S[0] = tmp
+
+        breakdown = False
+        for col in range(restart):
+            av = matvec(v[col, :])
+            w = psolve(av)
+
+            # Modified Gram-Schmidt
+            h0 = np.linalg.norm(w)
+            for k in range(col+1):
+                tmp = dotprod(v[k, :], w)
+                h[col, k] = tmp
+                w -= tmp*v[k, :]
+
+            h1 = np.linalg.norm(w)
+            h[col, col + 1] = h1
+            v[col + 1, :] = w[:]
+
+            # Exact solution indicator
+            if h1 <= eps*h0:
+                h[col, col + 1] = 0
+                breakdown = True
+            else:
+                v[col + 1, :] *= (1 / h1)
+
+            # apply past Givens rotations to current h column
+            for k in range(col):
+                c, s = givens[k, 0], givens[k, 1]
+                n0, n1 = h[col, [k, k+1]]
+                h[col, [k, k + 1]] = [c*n0 + s*n1, -s.conj()*n0 + c*n1]
+
+            # get and apply current rotation to h and S
+            c, s, mag = lartg(h[col, col], h[col, col+1])
+            givens[col, :] = [c, s]
+            h[col, [col, col+1]] = mag, 0
+
+            # S[col+1] component is always 0
+            tmp = -np.conjugate(s)*S[col]
+            S[[col, col + 1]] = [c*S[col], tmp]
+            presid = np.abs(tmp)
+            inner_iter += 1
+
+            if callback_type in ('legacy', 'pr_norm'):
+                callback(presid / bnrm2)
+            # Legacy behavior
+            if callback_type == 'legacy' and inner_iter == maxiter:
+                break
+            if presid <= ptol or breakdown:
+                break
+
+        # Solve h(col, col) upper triangular system and allow pseudo-solve
+        # singular cases as in (but without the f2py copies):
+        # y = trsv(h[:col+1, :col+1].T, S[:col+1])
+
+        if h[col, col] == 0:
+            S[col] = 0
+
+        y = np.zeros([col+1], dtype=x.dtype)
+        y[:] = S[:col+1]
+        for k in range(col, 0, -1):
+            if y[k] != 0:
+                y[k] /= h[k, k]
+                tmp = y[k]
+                y[:k] -= tmp*h[k, :k]
+        if y[0] != 0:
+            y[0] /= h[0, 0]
+
+        x += y @ v[:col+1, :]
+
+        r = b - matvec(x)
+        rnorm = np.linalg.norm(r)
+
+        # Legacy exit
+        if callback_type == 'legacy' and inner_iter == maxiter:
+            return postprocess(x), 0 if rnorm <= atol else maxiter
+
+        if callback_type == 'x':
+            callback(x)
+
+        if rnorm <= atol:
+            break
+        elif breakdown:
+            # Reached breakdown (= exact solution), but the external
+            # tolerance check failed. Bail out with failure.
+            break
+        elif presid <= ptol:
+            # Inner loop passed but outer didn't
+            ptol_max_factor = max(eps, 0.25 * ptol_max_factor)
+        else:
+            ptol_max_factor = min(1.0, 1.5 * ptol_max_factor)
+
+        ptol = presid * min(ptol_max_factor, atol / rnorm)
+
+    info = 0 if (rnorm <= atol) else maxiter
+    return postprocess(x), info
+
+
+def qmr(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M1=None, M2=None,
+        callback=None):
+    """Use Quasi-Minimal Residual iteration to solve ``Ax = b``.
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real-valued N-by-N matrix of the linear system.
+        Alternatively, ``A`` can be a linear operator which can
+        produce ``Ax`` and ``A^T x`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : ndarray
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+    x0 : ndarray
+        Starting guess for the solution.
+    atol, rtol : float, optional
+        Parameters for the convergence test. For convergence,
+        ``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
+        The default is ``atol=0.`` and ``rtol=1e-5``.
+    maxiter : integer
+        Maximum number of iterations.  Iteration will stop after maxiter
+        steps even if the specified tolerance has not been achieved.
+    M1 : {sparse array, ndarray, LinearOperator}
+        Left preconditioner for A.
+    M2 : {sparse array, ndarray, LinearOperator}
+        Right preconditioner for A. Used together with the left
+        preconditioner M1.  The matrix M1@A@M2 should have better
+        conditioned than A alone.
+    callback : function
+        User-supplied function to call after each iteration.  It is called
+        as callback(xk), where xk is the current solution vector.
+
+    Returns
+    -------
+    x : ndarray
+        The converged solution.
+    info : integer
+        Provides convergence information:
+            0  : successful exit
+            >0 : convergence to tolerance not achieved, number of iterations
+            <0 : parameter breakdown
+
+    See Also
+    --------
+    LinearOperator
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import qmr
+    >>> A = csc_array([[3., 2., 0.], [1., -1., 0.], [0., 5., 1.]])
+    >>> b = np.array([2., 4., -1.])
+    >>> x, exitCode = qmr(A, b, atol=1e-5)
+    >>> print(exitCode)            # 0 indicates successful convergence
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+    """
+    A_ = A
+    A, M, x, b, postprocess = make_system(A, None, x0, b)
+    bnrm2 = np.linalg.norm(b)
+
+    atol, _ = _get_atol_rtol('qmr', bnrm2, atol, rtol)
+
+    if bnrm2 == 0:
+        return postprocess(b), 0
+
+    if M1 is None and M2 is None:
+        if hasattr(A_, 'psolve'):
+            def left_psolve(b):
+                return A_.psolve(b, 'left')
+
+            def right_psolve(b):
+                return A_.psolve(b, 'right')
+
+            def left_rpsolve(b):
+                return A_.rpsolve(b, 'left')
+
+            def right_rpsolve(b):
+                return A_.rpsolve(b, 'right')
+            M1 = LinearOperator(A.shape,
+                                matvec=left_psolve,
+                                rmatvec=left_rpsolve)
+            M2 = LinearOperator(A.shape,
+                                matvec=right_psolve,
+                                rmatvec=right_rpsolve)
+        else:
+            def id(b):
+                return b
+            M1 = LinearOperator(A.shape, matvec=id, rmatvec=id)
+            M2 = LinearOperator(A.shape, matvec=id, rmatvec=id)
+
+    n = len(b)
+    if maxiter is None:
+        maxiter = n*10
+
+    dotprod = np.vdot if np.iscomplexobj(x) else np.dot
+
+    rhotol = np.finfo(x.dtype.char).eps
+    betatol = rhotol
+    gammatol = rhotol
+    deltatol = rhotol
+    epsilontol = rhotol
+    xitol = rhotol
+
+    r = b - A.matvec(x) if x.any() else b.copy()
+
+    vtilde = r.copy()
+    y = M1.matvec(vtilde)
+    rho = np.linalg.norm(y)
+    wtilde = r.copy()
+    z = M2.rmatvec(wtilde)
+    xi = np.linalg.norm(z)
+    gamma, eta, theta = 1, -1, 0
+    v = np.empty_like(vtilde)
+    w = np.empty_like(wtilde)
+
+    # Dummy values to initialize vars, silence linter warnings
+    epsilon, q, d, p, s = None, None, None, None, None
+
+    for iteration in range(maxiter):
+        if np.linalg.norm(r) < atol:  # Are we done?
+            return postprocess(x), 0
+        if np.abs(rho) < rhotol:  # rho breakdown
+            return postprocess(x), -10
+        if np.abs(xi) < xitol:  # xi breakdown
+            return postprocess(x), -15
+
+        v[:] = vtilde[:]
+        v *= (1 / rho)
+        y *= (1 / rho)
+        w[:] = wtilde[:]
+        w *= (1 / xi)
+        z *= (1 / xi)
+        delta = dotprod(z, y)
+
+        if np.abs(delta) < deltatol:  # delta breakdown
+            return postprocess(x), -13
+
+        ytilde = M2.matvec(y)
+        ztilde = M1.rmatvec(z)
+
+        if iteration > 0:
+            ytilde -= (xi * delta / epsilon) * p
+            p[:] = ytilde[:]
+            ztilde -= (rho * (delta / epsilon).conj()) * q
+            q[:] = ztilde[:]
+        else:  # First spin
+            p = ytilde.copy()
+            q = ztilde.copy()
+
+        ptilde = A.matvec(p)
+        epsilon = dotprod(q, ptilde)
+        if np.abs(epsilon) < epsilontol:  # epsilon breakdown
+            return postprocess(x), -14
+
+        beta = epsilon / delta
+        if np.abs(beta) < betatol:  # beta breakdown
+            return postprocess(x), -11
+
+        vtilde[:] = ptilde[:]
+        vtilde -= beta*v
+        y = M1.matvec(vtilde)
+
+        rho_prev = rho
+        rho = np.linalg.norm(y)
+        wtilde[:] = w[:]
+        wtilde *= - beta.conj()
+        wtilde += A.rmatvec(q)
+        z = M2.rmatvec(wtilde)
+        xi = np.linalg.norm(z)
+        gamma_prev = gamma
+        theta_prev = theta
+        theta = rho / (gamma_prev * np.abs(beta))
+        gamma = 1 / np.sqrt(1 + theta**2)
+
+        if np.abs(gamma) < gammatol:  # gamma breakdown
+            return postprocess(x), -12
+
+        eta *= -(rho_prev / beta) * (gamma / gamma_prev)**2
+
+        if iteration > 0:
+            d *= (theta_prev * gamma) ** 2
+            d += eta*p
+            s *= (theta_prev * gamma) ** 2
+            s += eta*ptilde
+        else:
+            d = p.copy()
+            d *= eta
+            s = ptilde.copy()
+            s *= eta
+
+        x += d
+        r -= s
+
+        if callback:
+            callback(x)
+
+    else:  # for loop exhausted
+        # Return incomplete progress
+        return postprocess(x), maxiter

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/lgmres.py

@@ -0,0 +1,230 @@
+# Copyright (C) 2009, Pauli Virtanen <pav@iki.fi>
+# Distributed under the same license as SciPy.
+
+import numpy as np
+from numpy.linalg import LinAlgError
+from scipy.linalg import get_blas_funcs
+from .iterative import _get_atol_rtol
+from .utils import make_system
+
+from ._gcrotmk import _fgmres
+
+__all__ = ['lgmres']
+
+
+def lgmres(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=1000, M=None, callback=None,
+           inner_m=30, outer_k=3, outer_v=None, store_outer_Av=True,
+           prepend_outer_v=False):
+    """
+    Solve a matrix equation using the LGMRES algorithm.
+
+    The LGMRES algorithm [1]_ [2]_ is designed to avoid some problems
+    in the convergence in restarted GMRES, and often converges in fewer
+    iterations.
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real or complex N-by-N matrix of the linear system.
+        Alternatively, ``A`` can be a linear operator which can
+        produce ``Ax`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : ndarray
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+    x0 : ndarray
+        Starting guess for the solution.
+    rtol, atol : float, optional
+        Parameters for the convergence test. For convergence,
+        ``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
+        The default is ``rtol=1e-5``, the default for ``atol`` is ``0.0``.
+    maxiter : int, optional
+        Maximum number of iterations.  Iteration will stop after maxiter
+        steps even if the specified tolerance has not been achieved.
+    M : {sparse array, ndarray, LinearOperator}, optional
+        Preconditioner for A.  The preconditioner should approximate the
+        inverse of A.  Effective preconditioning dramatically improves the
+        rate of convergence, which implies that fewer iterations are needed
+        to reach a given error tolerance.
+    callback : function, optional
+        User-supplied function to call after each iteration.  It is called
+        as callback(xk), where xk is the current solution vector.
+    inner_m : int, optional
+        Number of inner GMRES iterations per each outer iteration.
+    outer_k : int, optional
+        Number of vectors to carry between inner GMRES iterations.
+        According to [1]_, good values are in the range of 1...3.
+        However, note that if you want to use the additional vectors to
+        accelerate solving multiple similar problems, larger values may
+        be beneficial.
+    outer_v : list of tuples, optional
+        List containing tuples ``(v, Av)`` of vectors and corresponding
+        matrix-vector products, used to augment the Krylov subspace, and
+        carried between inner GMRES iterations. The element ``Av`` can
+        be `None` if the matrix-vector product should be re-evaluated.
+        This parameter is modified in-place by `lgmres`, and can be used
+        to pass "guess" vectors in and out of the algorithm when solving
+        similar problems.
+    store_outer_Av : bool, optional
+        Whether LGMRES should store also A@v in addition to vectors `v`
+        in the `outer_v` list. Default is True.
+    prepend_outer_v : bool, optional
+        Whether to put outer_v augmentation vectors before Krylov iterates.
+        In standard LGMRES, prepend_outer_v=False.
+
+    Returns
+    -------
+    x : ndarray
+        The converged solution.
+    info : int
+        Provides convergence information:
+
+            - 0  : successful exit
+            - >0 : convergence to tolerance not achieved, number of iterations
+            - <0 : illegal input or breakdown
+
+    Notes
+    -----
+    The LGMRES algorithm [1]_ [2]_ is designed to avoid the
+    slowing of convergence in restarted GMRES, due to alternating
+    residual vectors. Typically, it often outperforms GMRES(m) of
+    comparable memory requirements by some measure, or at least is not
+    much worse.
+
+    Another advantage in this algorithm is that you can supply it with
+    'guess' vectors in the `outer_v` argument that augment the Krylov
+    subspace. If the solution lies close to the span of these vectors,
+    the algorithm converges faster. This can be useful if several very
+    similar matrices need to be inverted one after another, such as in
+    Newton-Krylov iteration where the Jacobian matrix often changes
+    little in the nonlinear steps.
+
+    References
+    ----------
+    .. [1] A.H. Baker and E.R. Jessup and T. Manteuffel, "A Technique for
+             Accelerating the Convergence of Restarted GMRES", SIAM J. Matrix
+             Anal. Appl. 26, 962 (2005).
+    .. [2] A.H. Baker, "On Improving the Performance of the Linear Solver
+             restarted GMRES", PhD thesis, University of Colorado (2003).
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import lgmres
+    >>> A = csc_array([[3, 2, 0], [1, -1, 0], [0, 5, 1]], dtype=float)
+    >>> b = np.array([2, 4, -1], dtype=float)
+    >>> x, exitCode = lgmres(A, b, atol=1e-5)
+    >>> print(exitCode)            # 0 indicates successful convergence
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+    """
+    A,M,x,b,postprocess = make_system(A,M,x0,b)
+
+    if not np.isfinite(b).all():
+        raise ValueError("RHS must contain only finite numbers")
+
+    matvec = A.matvec
+    psolve = M.matvec
+
+    if outer_v is None:
+        outer_v = []
+
+    axpy, dot, scal = None, None, None
+    nrm2 = get_blas_funcs('nrm2', [b])
+
+    b_norm = nrm2(b)
+
+    # we call this to get the right atol/rtol and raise errors as necessary
+    atol, rtol = _get_atol_rtol('lgmres', b_norm, atol, rtol)
+
+    if b_norm == 0:
+        x = b
+        return (postprocess(x), 0)
+
+    ptol_max_factor = 1.0
+
+    for k_outer in range(maxiter):
+        r_outer = matvec(x) - b
+
+        # -- callback
+        if callback is not None:
+            callback(x)
+
+        # -- determine input type routines
+        if axpy is None:
+            if np.iscomplexobj(r_outer) and not np.iscomplexobj(x):
+                x = x.astype(r_outer.dtype)
+            axpy, dot, scal, nrm2 = get_blas_funcs(['axpy', 'dot', 'scal', 'nrm2'],
+                                                   (x, r_outer))
+
+        # -- check stopping condition
+        r_norm = nrm2(r_outer)
+        if r_norm <= max(atol, rtol * b_norm):
+            break
+
+        # -- inner LGMRES iteration
+        v0 = -psolve(r_outer)
+        inner_res_0 = nrm2(v0)
+
+        if inner_res_0 == 0:
+            rnorm = nrm2(r_outer)
+            raise RuntimeError("Preconditioner returned a zero vector; "
+                               f"|v| ~ {rnorm:.1g}, |M v| = 0")
+
+        v0 = scal(1.0/inner_res_0, v0)
+
+        ptol = min(ptol_max_factor, max(atol, rtol*b_norm)/r_norm)
+
+        try:
+            Q, R, B, vs, zs, y, pres = _fgmres(matvec,
+                                               v0,
+                                               inner_m,
+                                               lpsolve=psolve,
+                                               atol=ptol,
+                                               outer_v=outer_v,
+                                               prepend_outer_v=prepend_outer_v)
+            y *= inner_res_0
+            if not np.isfinite(y).all():
+                # Overflow etc. in computation. There's no way to
+                # recover from this, so we have to bail out.
+                raise LinAlgError()
+        except LinAlgError:
+            # Floating point over/underflow, non-finite result from
+            # matmul etc. -- report failure.
+            return postprocess(x), k_outer + 1
+
+        # Inner loop tolerance control
+        if pres > ptol:
+            ptol_max_factor = min(1.0, 1.5 * ptol_max_factor)
+        else:
+            ptol_max_factor = max(1e-16, 0.25 * ptol_max_factor)
+
+        # -- GMRES terminated: eval solution
+        dx = zs[0]*y[0]
+        for w, yc in zip(zs[1:], y[1:]):
+            dx = axpy(w, dx, dx.shape[0], yc)  # dx += w*yc
+
+        # -- Store LGMRES augmentation vectors
+        nx = nrm2(dx)
+        if nx > 0:
+            if store_outer_Av:
+                q = Q.dot(R.dot(y))
+                ax = vs[0]*q[0]
+                for v, qc in zip(vs[1:], q[1:]):
+                    ax = axpy(v, ax, ax.shape[0], qc)
+                outer_v.append((dx/nx, ax/nx))
+            else:
+                outer_v.append((dx/nx, None))
+
+        # -- Retain only a finite number of augmentation vectors
+        while len(outer_v) > outer_k:
+            del outer_v[0]
+
+        # -- Apply step
+        x += dx
+    else:
+        # didn't converge ...
+        return postprocess(x), maxiter
+
+    return postprocess(x), 0

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/lsmr.py

@@ -0,0 +1,486 @@
+"""
+Copyright (C) 2010 David Fong and Michael Saunders
+
+LSMR uses an iterative method.
+
+07 Jun 2010: Documentation updated
+03 Jun 2010: First release version in Python
+
+David Chin-lung Fong            clfong@stanford.edu
+Institute for Computational and Mathematical Engineering
+Stanford University
+
+Michael Saunders                saunders@stanford.edu
+Systems Optimization Laboratory
+Dept of MS&E, Stanford University.
+
+"""
+
+__all__ = ['lsmr']
+
+from numpy import zeros, inf, atleast_1d, result_type
+from numpy.linalg import norm
+from math import sqrt
+from scipy.sparse.linalg._interface import aslinearoperator
+
+from scipy.sparse.linalg._isolve.lsqr import _sym_ortho
+
+
+def lsmr(A, b, damp=0.0, atol=1e-6, btol=1e-6, conlim=1e8,
+         maxiter=None, show=False, x0=None):
+    """Iterative solver for least-squares problems.
+
+    lsmr solves the system of linear equations ``Ax = b``. If the system
+    is inconsistent, it solves the least-squares problem ``min ||b - Ax||_2``.
+    ``A`` is a rectangular matrix of dimension m-by-n, where all cases are
+    allowed: m = n, m > n, or m < n. ``b`` is a vector of length m.
+    The matrix A may be dense or sparse (usually sparse).
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        Matrix A in the linear system.
+        Alternatively, ``A`` can be a linear operator which can
+        produce ``Ax`` and ``A^H x`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : array_like, shape (m,)
+        Vector ``b`` in the linear system.
+    damp : float
+        Damping factor for regularized least-squares. `lsmr` solves
+        the regularized least-squares problem::
+
+         min ||(b) - (  A   )x||
+             ||(0)   (damp*I) ||_2
+
+        where damp is a scalar.  If damp is None or 0, the system
+        is solved without regularization. Default is 0.
+    atol, btol : float, optional
+        Stopping tolerances. `lsmr` continues iterations until a
+        certain backward error estimate is smaller than some quantity
+        depending on atol and btol.  Let ``r = b - Ax`` be the
+        residual vector for the current approximate solution ``x``.
+        If ``Ax = b`` seems to be consistent, `lsmr` terminates
+        when ``norm(r) <= atol * norm(A) * norm(x) + btol * norm(b)``.
+        Otherwise, `lsmr` terminates when ``norm(A^H r) <=
+        atol * norm(A) * norm(r)``.  If both tolerances are 1.0e-6 (default),
+        the final ``norm(r)`` should be accurate to about 6
+        digits. (The final ``x`` will usually have fewer correct digits,
+        depending on ``cond(A)`` and the size of LAMBDA.)  If `atol`
+        or `btol` is None, a default value of 1.0e-6 will be used.
+        Ideally, they should be estimates of the relative error in the
+        entries of ``A`` and ``b`` respectively.  For example, if the entries
+        of ``A`` have 7 correct digits, set ``atol = 1e-7``. This prevents
+        the algorithm from doing unnecessary work beyond the
+        uncertainty of the input data.
+    conlim : float, optional
+        `lsmr` terminates if an estimate of ``cond(A)`` exceeds
+        `conlim`.  For compatible systems ``Ax = b``, conlim could be
+        as large as 1.0e+12 (say).  For least-squares problems,
+        `conlim` should be less than 1.0e+8. If `conlim` is None, the
+        default value is 1e+8.  Maximum precision can be obtained by
+        setting ``atol = btol = conlim = 0``, but the number of
+        iterations may then be excessive. Default is 1e8.
+    maxiter : int, optional
+        `lsmr` terminates if the number of iterations reaches
+        `maxiter`.  The default is ``maxiter = min(m, n)``.  For
+        ill-conditioned systems, a larger value of `maxiter` may be
+        needed. Default is False.
+    show : bool, optional
+        Print iterations logs if ``show=True``. Default is False.
+    x0 : array_like, shape (n,), optional
+        Initial guess of ``x``, if None zeros are used. Default is None.
+
+        .. versionadded:: 1.0.0
+
+    Returns
+    -------
+    x : ndarray of float
+        Least-square solution returned.
+    istop : int
+        istop gives the reason for stopping::
+
+          istop   = 0 means x=0 is a solution.  If x0 was given, then x=x0 is a
+                      solution.
+                  = 1 means x is an approximate solution to A@x = B,
+                      according to atol and btol.
+                  = 2 means x approximately solves the least-squares problem
+                      according to atol.
+                  = 3 means COND(A) seems to be greater than CONLIM.
+                  = 4 is the same as 1 with atol = btol = eps (machine
+                      precision)
+                  = 5 is the same as 2 with atol = eps.
+                  = 6 is the same as 3 with CONLIM = 1/eps.
+                  = 7 means ITN reached maxiter before the other stopping
+                      conditions were satisfied.
+
+    itn : int
+        Number of iterations used.
+    normr : float
+        ``norm(b-Ax)``
+    normar : float
+        ``norm(A^H (b - Ax))``
+    norma : float
+        ``norm(A)``
+    conda : float
+        Condition number of A.
+    normx : float
+        ``norm(x)``
+
+    Notes
+    -----
+
+    .. versionadded:: 0.11.0
+
+    References
+    ----------
+    .. [1] D. C.-L. Fong and M. A. Saunders,
+           "LSMR: An iterative algorithm for sparse least-squares problems",
+           SIAM J. Sci. Comput., vol. 33, pp. 2950-2971, 2011.
+           :arxiv:`1006.0758`
+    .. [2] LSMR Software, https://web.stanford.edu/group/SOL/software/lsmr/
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import lsmr
+    >>> A = csc_array([[1., 0.], [1., 1.], [0., 1.]], dtype=float)
+
+    The first example has the trivial solution ``[0, 0]``
+
+    >>> b = np.array([0., 0., 0.], dtype=float)
+    >>> x, istop, itn, normr = lsmr(A, b)[:4]
+    >>> istop
+    0
+    >>> x
+    array([0., 0.])
+
+    The stopping code ``istop=0`` returned indicates that a vector of zeros was
+    found as a solution. The returned solution `x` indeed contains
+    ``[0., 0.]``. The next example has a non-trivial solution:
+
+    >>> b = np.array([1., 0., -1.], dtype=float)
+    >>> x, istop, itn, normr = lsmr(A, b)[:4]
+    >>> istop
+    1
+    >>> x
+    array([ 1., -1.])
+    >>> itn
+    1
+    >>> normr
+    4.440892098500627e-16
+
+    As indicated by ``istop=1``, `lsmr` found a solution obeying the tolerance
+    limits. The given solution ``[1., -1.]`` obviously solves the equation. The
+    remaining return values include information about the number of iterations
+    (`itn=1`) and the remaining difference of left and right side of the solved
+    equation.
+    The final example demonstrates the behavior in the case where there is no
+    solution for the equation:
+
+    >>> b = np.array([1., 0.01, -1.], dtype=float)
+    >>> x, istop, itn, normr = lsmr(A, b)[:4]
+    >>> istop
+    2
+    >>> x
+    array([ 1.00333333, -0.99666667])
+    >>> A.dot(x)-b
+    array([ 0.00333333, -0.00333333,  0.00333333])
+    >>> normr
+    0.005773502691896255
+
+    `istop` indicates that the system is inconsistent and thus `x` is rather an
+    approximate solution to the corresponding least-squares problem. `normr`
+    contains the minimal distance that was found.
+    """
+
+    A = aslinearoperator(A)
+    b = atleast_1d(b)
+    if b.ndim > 1:
+        b = b.squeeze()
+
+    msg = ('The exact solution is x = 0, or x = x0, if x0 was given  ',
+           'Ax - b is small enough, given atol, btol                  ',
+           'The least-squares solution is good enough, given atol     ',
+           'The estimate of cond(Abar) has exceeded conlim            ',
+           'Ax - b is small enough for this machine                   ',
+           'The least-squares solution is good enough for this machine',
+           'Cond(Abar) seems to be too large for this machine         ',
+           'The iteration limit has been reached                      ')
+
+    hdg1 = '   itn      x(1)       norm r    norm Ar'
+    hdg2 = ' compatible   LS      norm A   cond A'
+    pfreq = 20   # print frequency (for repeating the heading)
+    pcount = 0   # print counter
+
+    m, n = A.shape
+
+    # stores the num of singular values
+    minDim = min([m, n])
+
+    if maxiter is None:
+        maxiter = minDim
+
+    if x0 is None:
+        dtype = result_type(A, b, float)
+    else:
+        dtype = result_type(A, b, x0, float)
+
+    if show:
+        print(' ')
+        print('LSMR            Least-squares solution of  Ax = b\n')
+        print(f'The matrix A has {m} rows and {n} columns')
+        print(f'damp = {damp:20.14e}\n')
+        print(f'atol = {atol:8.2e}                 conlim = {conlim:8.2e}\n')
+        print(f'btol = {btol:8.2e}             maxiter = {maxiter:8g}\n')
+
+    u = b
+    normb = norm(b)
+    if x0 is None:
+        x = zeros(n, dtype)
+        beta = normb.copy()
+    else:
+        x = atleast_1d(x0.copy())
+        u = u - A.matvec(x)
+        beta = norm(u)
+
+    if beta > 0:
+        u = (1 / beta) * u
+        v = A.rmatvec(u)
+        alpha = norm(v)
+    else:
+        v = zeros(n, dtype)
+        alpha = 0
+
+    if alpha > 0:
+        v = (1 / alpha) * v
+
+    # Initialize variables for 1st iteration.
+
+    itn = 0
+    zetabar = alpha * beta
+    alphabar = alpha
+    rho = 1
+    rhobar = 1
+    cbar = 1
+    sbar = 0
+
+    h = v.copy()
+    hbar = zeros(n, dtype)
+
+    # Initialize variables for estimation of ||r||.
+
+    betadd = beta
+    betad = 0
+    rhodold = 1
+    tautildeold = 0
+    thetatilde = 0
+    zeta = 0
+    d = 0
+
+    # Initialize variables for estimation of ||A|| and cond(A)
+
+    normA2 = alpha * alpha
+    maxrbar = 0
+    minrbar = 1e+100
+    normA = sqrt(normA2)
+    condA = 1
+    normx = 0
+
+    # Items for use in stopping rules, normb set earlier
+    istop = 0
+    ctol = 0
+    if conlim > 0:
+        ctol = 1 / conlim
+    normr = beta
+
+    # Reverse the order here from the original matlab code because
+    # there was an error on return when arnorm==0
+    normar = alpha * beta
+    if normar == 0:
+        if show:
+            print(msg[0])
+        return x, istop, itn, normr, normar, normA, condA, normx
+
+    if normb == 0:
+        x[()] = 0
+        return x, istop, itn, normr, normar, normA, condA, normx
+
+    if show:
+        print(' ')
+        print(hdg1, hdg2)
+        test1 = 1
+        test2 = alpha / beta
+        str1 = f'{itn:6g} {x[0]:12.5e}'
+        str2 = f' {normr:10.3e} {normar:10.3e}'
+        str3 = f'  {test1:8.1e} {test2:8.1e}'
+        print(''.join([str1, str2, str3]))
+
+    # Main iteration loop.
+    while itn < maxiter:
+        itn = itn + 1
+
+        # Perform the next step of the bidiagonalization to obtain the
+        # next  beta, u, alpha, v.  These satisfy the relations
+        #         beta*u  =  A@v   -  alpha*u,
+        #        alpha*v  =  A'@u  -  beta*v.
+
+        u *= -alpha
+        u += A.matvec(v)
+        beta = norm(u)
+
+        if beta > 0:
+            u *= (1 / beta)
+            v *= -beta
+            v += A.rmatvec(u)
+            alpha = norm(v)
+            if alpha > 0:
+                v *= (1 / alpha)
+
+        # At this point, beta = beta_{k+1}, alpha = alpha_{k+1}.
+
+        # Construct rotation Qhat_{k,2k+1}.
+
+        chat, shat, alphahat = _sym_ortho(alphabar, damp)
+
+        # Use a plane rotation (Q_i) to turn B_i to R_i
+
+        rhoold = rho
+        c, s, rho = _sym_ortho(alphahat, beta)
+        thetanew = s*alpha
+        alphabar = c*alpha
+
+        # Use a plane rotation (Qbar_i) to turn R_i^T to R_i^bar
+
+        rhobarold = rhobar
+        zetaold = zeta
+        thetabar = sbar * rho
+        rhotemp = cbar * rho
+        cbar, sbar, rhobar = _sym_ortho(cbar * rho, thetanew)
+        zeta = cbar * zetabar
+        zetabar = - sbar * zetabar
+
+        # Update h, h_hat, x.
+
+        hbar *= - (thetabar * rho / (rhoold * rhobarold))
+        hbar += h
+        x += (zeta / (rho * rhobar)) * hbar
+        h *= - (thetanew / rho)
+        h += v
+
+        # Estimate of ||r||.
+
+        # Apply rotation Qhat_{k,2k+1}.
+        betaacute = chat * betadd
+        betacheck = -shat * betadd
+
+        # Apply rotation Q_{k,k+1}.
+        betahat = c * betaacute
+        betadd = -s * betaacute
+
+        # Apply rotation Qtilde_{k-1}.
+        # betad = betad_{k-1} here.
+
+        thetatildeold = thetatilde
+        ctildeold, stildeold, rhotildeold = _sym_ortho(rhodold, thetabar)
+        thetatilde = stildeold * rhobar
+        rhodold = ctildeold * rhobar
+        betad = - stildeold * betad + ctildeold * betahat
+
+        # betad   = betad_k here.
+        # rhodold = rhod_k  here.
+
+        tautildeold = (zetaold - thetatildeold * tautildeold) / rhotildeold
+        taud = (zeta - thetatilde * tautildeold) / rhodold
+        d = d + betacheck * betacheck
+        normr = sqrt(d + (betad - taud)**2 + betadd * betadd)
+
+        # Estimate ||A||.
+        normA2 = normA2 + beta * beta
+        normA = sqrt(normA2)
+        normA2 = normA2 + alpha * alpha
+
+        # Estimate cond(A).
+        maxrbar = max(maxrbar, rhobarold)
+        if itn > 1:
+            minrbar = min(minrbar, rhobarold)
+        condA = max(maxrbar, rhotemp) / min(minrbar, rhotemp)
+
+        # Test for convergence.
+
+        # Compute norms for convergence testing.
+        normar = abs(zetabar)
+        normx = norm(x)
+
+        # Now use these norms to estimate certain other quantities,
+        # some of which will be small near a solution.
+
+        test1 = normr / normb
+        if (normA * normr) != 0:
+            test2 = normar / (normA * normr)
+        else:
+            test2 = inf
+        test3 = 1 / condA
+        t1 = test1 / (1 + normA * normx / normb)
+        rtol = btol + atol * normA * normx / normb
+
+        # The following tests guard against extremely small values of
+        # atol, btol or ctol.  (The user may have set any or all of
+        # the parameters atol, btol, conlim  to 0.)
+        # The effect is equivalent to the normAl tests using
+        # atol = eps,  btol = eps,  conlim = 1/eps.
+
+        if itn >= maxiter:
+            istop = 7
+        if 1 + test3 <= 1:
+            istop = 6
+        if 1 + test2 <= 1:
+            istop = 5
+        if 1 + t1 <= 1:
+            istop = 4
+
+        # Allow for tolerances set by the user.
+
+        if test3 <= ctol:
+            istop = 3
+        if test2 <= atol:
+            istop = 2
+        if test1 <= rtol:
+            istop = 1
+
+        # See if it is time to print something.
+
+        if show:
+            if (n <= 40) or (itn <= 10) or (itn >= maxiter - 10) or \
+               (itn % 10 == 0) or (test3 <= 1.1 * ctol) or \
+               (test2 <= 1.1 * atol) or (test1 <= 1.1 * rtol) or \
+               (istop != 0):
+
+                if pcount >= pfreq:
+                    pcount = 0
+                    print(' ')
+                    print(hdg1, hdg2)
+                pcount = pcount + 1
+                str1 = f'{itn:6g} {x[0]:12.5e}'
+                str2 = f' {normr:10.3e} {normar:10.3e}'
+                str3 = f'  {test1:8.1e} {test2:8.1e}'
+                str4 = f' {normA:8.1e} {condA:8.1e}'
+                print(''.join([str1, str2, str3, str4]))
+
+        if istop > 0:
+            break
+
+    # Print the stopping condition.
+
+    if show:
+        print(' ')
+        print('LSMR finished')
+        print(msg[istop])
+        print(f'istop ={istop:8g}    normr ={normr:8.1e}')
+        print(f'    normA ={normA:8.1e}    normAr ={normar:8.1e}')
+        print(f'itn   ={itn:8g}    condA ={condA:8.1e}')
+        print(f'    normx ={normx:8.1e}')
+        print(str1, str2)
+        print(str3, str4)
+
+    return x, istop, itn, normr, normar, normA, condA, normx

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/lsqr.py

@@ -0,0 +1,589 @@
+"""Sparse Equations and Least Squares.
+
+The original Fortran code was written by C. C. Paige and M. A. Saunders as
+described in
+
+C. C. Paige and M. A. Saunders, LSQR: An algorithm for sparse linear
+equations and sparse least squares, TOMS 8(1), 43--71 (1982).
+
+C. C. Paige and M. A. Saunders, Algorithm 583; LSQR: Sparse linear
+equations and least-squares problems, TOMS 8(2), 195--209 (1982).
+
+It is licensed under the following BSD license:
+
+Copyright (c) 2006, Systems Optimization Laboratory
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+    * Redistributions of source code must retain the above copyright
+      notice, this list of conditions and the following disclaimer.
+
+    * Redistributions in binary form must reproduce the above
+      copyright notice, this list of conditions and the following
+      disclaimer in the documentation and/or other materials provided
+      with the distribution.
+
+    * Neither the name of Stanford University nor the names of its
+      contributors may be used to endorse or promote products derived
+      from this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+The Fortran code was translated to Python for use in CVXOPT by Jeffery
+Kline with contributions by Mridul Aanjaneya and Bob Myhill.
+
+Adapted for SciPy by Stefan van der Walt.
+
+"""
+
+__all__ = ['lsqr']
+
+import numpy as np
+from math import sqrt
+from scipy.sparse.linalg._interface import aslinearoperator
+from scipy.sparse._sputils import convert_pydata_sparse_to_scipy
+
+eps = np.finfo(np.float64).eps
+
+
+def _sym_ortho(a, b):
+    """
+    Stable implementation of Givens rotation.
+
+    Notes
+    -----
+    The routine 'SymOrtho' was added for numerical stability. This is
+    recommended by S.-C. Choi in [1]_.  It removes the unpleasant potential of
+    ``1/eps`` in some important places (see, for example text following
+    "Compute the next plane rotation Qk" in minres.py).
+
+    References
+    ----------
+    .. [1] S.-C. Choi, "Iterative Methods for Singular Linear Equations
+           and Least-Squares Problems", Dissertation,
+           http://www.stanford.edu/group/SOL/dissertations/sou-cheng-choi-thesis.pdf
+
+    """
+    if b == 0:
+        return np.sign(a), 0, abs(a)
+    elif a == 0:
+        return 0, np.sign(b), abs(b)
+    elif abs(b) > abs(a):
+        tau = a / b
+        s = np.sign(b) / sqrt(1 + tau * tau)
+        c = s * tau
+        r = b / s
+    else:
+        tau = b / a
+        c = np.sign(a) / sqrt(1+tau*tau)
+        s = c * tau
+        r = a / c
+    return c, s, r
+
+
+def lsqr(A, b, damp=0.0, atol=1e-6, btol=1e-6, conlim=1e8,
+         iter_lim=None, show=False, calc_var=False, x0=None):
+    """Find the least-squares solution to a large, sparse, linear system
+    of equations.
+
+    The function solves ``Ax = b``  or  ``min ||Ax - b||^2`` or
+    ``min ||Ax - b||^2 + d^2 ||x - x0||^2``.
+
+    The matrix A may be square or rectangular (over-determined or
+    under-determined), and may have any rank.
+
+    ::
+
+      1. Unsymmetric equations --    solve  Ax = b
+
+      2. Linear least squares  --    solve  Ax = b
+                                     in the least-squares sense
+
+      3. Damped least squares  --    solve  (   A    )*x = (    b    )
+                                            ( damp*I )     ( damp*x0 )
+                                     in the least-squares sense
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        Representation of an m-by-n matrix.
+        Alternatively, ``A`` can be a linear operator which can
+        produce ``Ax`` and ``A^T x`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : array_like, shape (m,)
+        Right-hand side vector ``b``.
+    damp : float
+        Damping coefficient. Default is 0.
+    atol, btol : float, optional
+        Stopping tolerances. `lsqr` continues iterations until a
+        certain backward error estimate is smaller than some quantity
+        depending on atol and btol.  Let ``r = b - Ax`` be the
+        residual vector for the current approximate solution ``x``.
+        If ``Ax = b`` seems to be consistent, `lsqr` terminates
+        when ``norm(r) <= atol * norm(A) * norm(x) + btol * norm(b)``.
+        Otherwise, `lsqr` terminates when ``norm(A^H r) <=
+        atol * norm(A) * norm(r)``.  If both tolerances are 1.0e-6 (default),
+        the final ``norm(r)`` should be accurate to about 6
+        digits. (The final ``x`` will usually have fewer correct digits,
+        depending on ``cond(A)`` and the size of LAMBDA.)  If `atol`
+        or `btol` is None, a default value of 1.0e-6 will be used.
+        Ideally, they should be estimates of the relative error in the
+        entries of ``A`` and ``b`` respectively.  For example, if the entries
+        of ``A`` have 7 correct digits, set ``atol = 1e-7``. This prevents
+        the algorithm from doing unnecessary work beyond the
+        uncertainty of the input data.
+    conlim : float, optional
+        Another stopping tolerance.  lsqr terminates if an estimate of
+        ``cond(A)`` exceeds `conlim`.  For compatible systems ``Ax =
+        b``, `conlim` could be as large as 1.0e+12 (say).  For
+        least-squares problems, conlim should be less than 1.0e+8.
+        Maximum precision can be obtained by setting ``atol = btol =
+        conlim = zero``, but the number of iterations may then be
+        excessive. Default is 1e8.
+    iter_lim : int, optional
+        Explicit limitation on number of iterations (for safety).
+    show : bool, optional
+        Display an iteration log. Default is False.
+    calc_var : bool, optional
+        Whether to estimate diagonals of ``(A'A + damp^2*I)^{-1}``.
+    x0 : array_like, shape (n,), optional
+        Initial guess of x, if None zeros are used. Default is None.
+
+        .. versionadded:: 1.0.0
+
+    Returns
+    -------
+    x : ndarray of float
+        The final solution.
+    istop : int
+        Gives the reason for termination.
+        1 means x is an approximate solution to Ax = b.
+        2 means x approximately solves the least-squares problem.
+    itn : int
+        Iteration number upon termination.
+    r1norm : float
+        ``norm(r)``, where ``r = b - Ax``.
+    r2norm : float
+        ``sqrt( norm(r)^2  +  damp^2 * norm(x - x0)^2 )``.  Equal to `r1norm`
+        if ``damp == 0``.
+    anorm : float
+        Estimate of Frobenius norm of ``Abar = [[A]; [damp*I]]``.
+    acond : float
+        Estimate of ``cond(Abar)``.
+    arnorm : float
+        Estimate of ``norm(A'@r - damp^2*(x - x0))``.
+    xnorm : float
+        ``norm(x)``
+    var : ndarray of float
+        If ``calc_var`` is True, estimates all diagonals of
+        ``(A'A)^{-1}`` (if ``damp == 0``) or more generally ``(A'A +
+        damp^2*I)^{-1}``.  This is well defined if A has full column
+        rank or ``damp > 0``.  (Not sure what var means if ``rank(A)
+        < n`` and ``damp = 0.``)
+
+    Notes
+    -----
+    LSQR uses an iterative method to approximate the solution.  The
+    number of iterations required to reach a certain accuracy depends
+    strongly on the scaling of the problem.  Poor scaling of the rows
+    or columns of A should therefore be avoided where possible.
+
+    For example, in problem 1 the solution is unaltered by
+    row-scaling.  If a row of A is very small or large compared to
+    the other rows of A, the corresponding row of ( A  b ) should be
+    scaled up or down.
+
+    In problems 1 and 2, the solution x is easily recovered
+    following column-scaling.  Unless better information is known,
+    the nonzero columns of A should be scaled so that they all have
+    the same Euclidean norm (e.g., 1.0).
+
+    In problem 3, there is no freedom to re-scale if damp is
+    nonzero.  However, the value of damp should be assigned only
+    after attention has been paid to the scaling of A.
+
+    The parameter damp is intended to help regularize
+    ill-conditioned systems, by preventing the true solution from
+    being very large.  Another aid to regularization is provided by
+    the parameter acond, which may be used to terminate iterations
+    before the computed solution becomes very large.
+
+    If some initial estimate ``x0`` is known and if ``damp == 0``,
+    one could proceed as follows:
+
+      1. Compute a residual vector ``r0 = b - A@x0``.
+      2. Use LSQR to solve the system  ``A@dx = r0``.
+      3. Add the correction dx to obtain a final solution ``x = x0 + dx``.
+
+    This requires that ``x0`` be available before and after the call
+    to LSQR.  To judge the benefits, suppose LSQR takes k1 iterations
+    to solve A@x = b and k2 iterations to solve A@dx = r0.
+    If x0 is "good", norm(r0) will be smaller than norm(b).
+    If the same stopping tolerances atol and btol are used for each
+    system, k1 and k2 will be similar, but the final solution x0 + dx
+    should be more accurate.  The only way to reduce the total work
+    is to use a larger stopping tolerance for the second system.
+    If some value btol is suitable for A@x = b, the larger value
+    btol*norm(b)/norm(r0)  should be suitable for A@dx = r0.
+
+    Preconditioning is another way to reduce the number of iterations.
+    If it is possible to solve a related system ``M@x = b``
+    efficiently, where M approximates A in some helpful way (e.g. M -
+    A has low rank or its elements are small relative to those of A),
+    LSQR may converge more rapidly on the system ``A@M(inverse)@z =
+    b``, after which x can be recovered by solving M@x = z.
+
+    If A is symmetric, LSQR should not be used!
+
+    Alternatives are the symmetric conjugate-gradient method (cg)
+    and/or SYMMLQ.  SYMMLQ is an implementation of symmetric cg that
+    applies to any symmetric A and will converge more rapidly than
+    LSQR.  If A is positive definite, there are other implementations
+    of symmetric cg that require slightly less work per iteration than
+    SYMMLQ (but will take the same number of iterations).
+
+    References
+    ----------
+    .. [1] C. C. Paige and M. A. Saunders (1982a).
+           "LSQR: An algorithm for sparse linear equations and
+           sparse least squares", ACM TOMS 8(1), 43-71.
+    .. [2] C. C. Paige and M. A. Saunders (1982b).
+           "Algorithm 583.  LSQR: Sparse linear equations and least
+           squares problems", ACM TOMS 8(2), 195-209.
+    .. [3] M. A. Saunders (1995).  "Solution of sparse rectangular
+           systems using LSQR and CRAIG", BIT 35, 588-604.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import lsqr
+    >>> A = csc_array([[1., 0.], [1., 1.], [0., 1.]], dtype=float)
+
+    The first example has the trivial solution ``[0, 0]``
+
+    >>> b = np.array([0., 0., 0.], dtype=float)
+    >>> x, istop, itn, normr = lsqr(A, b)[:4]
+    >>> istop
+    0
+    >>> x
+    array([ 0.,  0.])
+
+    The stopping code ``istop=0`` returned indicates that a vector of zeros was
+    found as a solution. The returned solution `x` indeed contains
+    ``[0., 0.]``. The next example has a non-trivial solution:
+
+    >>> b = np.array([1., 0., -1.], dtype=float)
+    >>> x, istop, itn, r1norm = lsqr(A, b)[:4]
+    >>> istop
+    1
+    >>> x
+    array([ 1., -1.])
+    >>> itn
+    1
+    >>> r1norm
+    4.440892098500627e-16
+
+    As indicated by ``istop=1``, `lsqr` found a solution obeying the tolerance
+    limits. The given solution ``[1., -1.]`` obviously solves the equation. The
+    remaining return values include information about the number of iterations
+    (`itn=1`) and the remaining difference of left and right side of the solved
+    equation.
+    The final example demonstrates the behavior in the case where there is no
+    solution for the equation:
+
+    >>> b = np.array([1., 0.01, -1.], dtype=float)
+    >>> x, istop, itn, r1norm = lsqr(A, b)[:4]
+    >>> istop
+    2
+    >>> x
+    array([ 1.00333333, -0.99666667])
+    >>> A.dot(x)-b
+    array([ 0.00333333, -0.00333333,  0.00333333])
+    >>> r1norm
+    0.005773502691896255
+
+    `istop` indicates that the system is inconsistent and thus `x` is rather an
+    approximate solution to the corresponding least-squares problem. `r1norm`
+    contains the norm of the minimal residual that was found.
+    """
+    A = convert_pydata_sparse_to_scipy(A)
+    A = aslinearoperator(A)
+    b = np.atleast_1d(b)
+    if b.ndim > 1:
+        b = b.squeeze()
+
+    m, n = A.shape
+    if iter_lim is None:
+        iter_lim = 2 * n
+    var = np.zeros(n)
+
+    msg = ('The exact solution is  x = 0                              ',
+           'Ax - b is small enough, given atol, btol                  ',
+           'The least-squares solution is good enough, given atol     ',
+           'The estimate of cond(Abar) has exceeded conlim            ',
+           'Ax - b is small enough for this machine                   ',
+           'The least-squares solution is good enough for this machine',
+           'Cond(Abar) seems to be too large for this machine         ',
+           'The iteration limit has been reached                      ')
+
+    if show:
+        print(' ')
+        print('LSQR            Least-squares solution of  Ax = b')
+        str1 = f'The matrix A has {m} rows and {n} columns'
+        str2 = f'damp = {damp:20.14e}   calc_var = {calc_var:8g}'
+        str3 = f'atol = {atol:8.2e}                 conlim = {conlim:8.2e}'
+        str4 = f'btol = {btol:8.2e}               iter_lim = {iter_lim:8g}'
+        print(str1)
+        print(str2)
+        print(str3)
+        print(str4)
+
+    itn = 0
+    istop = 0
+    ctol = 0
+    if conlim > 0:
+        ctol = 1/conlim
+    anorm = 0
+    acond = 0
+    dampsq = damp**2
+    ddnorm = 0
+    res2 = 0
+    xnorm = 0
+    xxnorm = 0
+    z = 0
+    cs2 = -1
+    sn2 = 0
+
+    # Set up the first vectors u and v for the bidiagonalization.
+    # These satisfy  beta*u = b - A@x,  alfa*v = A'@u.
+    u = b
+    bnorm = np.linalg.norm(b)
+
+    if x0 is None:
+        x = np.zeros(n)
+        beta = bnorm.copy()
+    else:
+        x = np.asarray(x0)
+        u = u - A.matvec(x)
+        beta = np.linalg.norm(u)
+
+    if beta > 0:
+        u = (1/beta) * u
+        v = A.rmatvec(u)
+        alfa = np.linalg.norm(v)
+    else:
+        v = x.copy()
+        alfa = 0
+
+    if alfa > 0:
+        v = (1/alfa) * v
+    w = v.copy()
+
+    rhobar = alfa
+    phibar = beta
+    rnorm = beta
+    r1norm = rnorm
+    r2norm = rnorm
+
+    # Reverse the order here from the original matlab code because
+    # there was an error on return when arnorm==0
+    arnorm = alfa * beta
+    if arnorm == 0:
+        if show:
+            print(msg[0])
+        return x, istop, itn, r1norm, r2norm, anorm, acond, arnorm, xnorm, var
+
+    head1 = '   Itn      x[0]       r1norm     r2norm '
+    head2 = ' Compatible    LS      Norm A   Cond A'
+
+    if show:
+        print(' ')
+        print(head1, head2)
+        test1 = 1
+        test2 = alfa / beta
+        str1 = f'{itn:6g} {x[0]:12.5e}'
+        str2 = f' {r1norm:10.3e} {r2norm:10.3e}'
+        str3 = f'  {test1:8.1e} {test2:8.1e}'
+        print(str1, str2, str3)
+
+    # Main iteration loop.
+    while itn < iter_lim:
+        itn = itn + 1
+        # Perform the next step of the bidiagonalization to obtain the
+        # next  beta, u, alfa, v. These satisfy the relations
+        #     beta*u  =  a@v   -  alfa*u,
+        #     alfa*v  =  A'@u  -  beta*v.
+        u = A.matvec(v) - alfa * u
+        beta = np.linalg.norm(u)
+
+        if beta > 0:
+            u = (1/beta) * u
+            anorm = sqrt(anorm**2 + alfa**2 + beta**2 + dampsq)
+            v = A.rmatvec(u) - beta * v
+            alfa = np.linalg.norm(v)
+            if alfa > 0:
+                v = (1 / alfa) * v
+
+        # Use a plane rotation to eliminate the damping parameter.
+        # This alters the diagonal (rhobar) of the lower-bidiagonal matrix.
+        if damp > 0:
+            rhobar1 = sqrt(rhobar**2 + dampsq)
+            cs1 = rhobar / rhobar1
+            sn1 = damp / rhobar1
+            psi = sn1 * phibar
+            phibar = cs1 * phibar
+        else:
+            # cs1 = 1 and sn1 = 0
+            rhobar1 = rhobar
+            psi = 0.
+
+        # Use a plane rotation to eliminate the subdiagonal element (beta)
+        # of the lower-bidiagonal matrix, giving an upper-bidiagonal matrix.
+        cs, sn, rho = _sym_ortho(rhobar1, beta)
+
+        theta = sn * alfa
+        rhobar = -cs * alfa
+        phi = cs * phibar
+        phibar = sn * phibar
+        tau = sn * phi
+
+        # Update x and w.
+        t1 = phi / rho
+        t2 = -theta / rho
+        dk = (1 / rho) * w
+
+        x = x + t1 * w
+        w = v + t2 * w
+        ddnorm = ddnorm + np.linalg.norm(dk)**2
+
+        if calc_var:
+            var = var + dk**2
+
+        # Use a plane rotation on the right to eliminate the
+        # super-diagonal element (theta) of the upper-bidiagonal matrix.
+        # Then use the result to estimate norm(x).
+        delta = sn2 * rho
+        gambar = -cs2 * rho
+        rhs = phi - delta * z
+        zbar = rhs / gambar
+        xnorm = sqrt(xxnorm + zbar**2)
+        gamma = sqrt(gambar**2 + theta**2)
+        cs2 = gambar / gamma
+        sn2 = theta / gamma
+        z = rhs / gamma
+        xxnorm = xxnorm + z**2
+
+        # Test for convergence.
+        # First, estimate the condition of the matrix  Abar,
+        # and the norms of  rbar  and  Abar'rbar.
+        acond = anorm * sqrt(ddnorm)
+        res1 = phibar**2
+        res2 = res2 + psi**2
+        rnorm = sqrt(res1 + res2)
+        arnorm = alfa * abs(tau)
+
+        # Distinguish between
+        #    r1norm = ||b - Ax|| and
+        #    r2norm = rnorm in current code
+        #           = sqrt(r1norm^2 + damp^2*||x - x0||^2).
+        #    Estimate r1norm from
+        #    r1norm = sqrt(r2norm^2 - damp^2*||x - x0||^2).
+        # Although there is cancellation, it might be accurate enough.
+        if damp > 0:
+            r1sq = rnorm**2 - dampsq * xxnorm
+            r1norm = sqrt(abs(r1sq))
+            if r1sq < 0:
+                r1norm = -r1norm
+        else:
+            r1norm = rnorm
+        r2norm = rnorm
+
+        # Now use these norms to estimate certain other quantities,
+        # some of which will be small near a solution.
+        test1 = rnorm / bnorm
+        test2 = arnorm / (anorm * rnorm + eps)
+        test3 = 1 / (acond + eps)
+        t1 = test1 / (1 + anorm * xnorm / bnorm)
+        rtol = btol + atol * anorm * xnorm / bnorm
+
+        # The following tests guard against extremely small values of
+        # atol, btol  or  ctol.  (The user may have set any or all of
+        # the parameters  atol, btol, conlim  to 0.)
+        # The effect is equivalent to the normal tests using
+        # atol = eps,  btol = eps,  conlim = 1/eps.
+        if itn >= iter_lim:
+            istop = 7
+        if 1 + test3 <= 1:
+            istop = 6
+        if 1 + test2 <= 1:
+            istop = 5
+        if 1 + t1 <= 1:
+            istop = 4
+
+        # Allow for tolerances set by the user.
+        if test3 <= ctol:
+            istop = 3
+        if test2 <= atol:
+            istop = 2
+        if test1 <= rtol:
+            istop = 1
+
+        if show:
+            # See if it is time to print something.
+            prnt = False
+            if n <= 40:
+                prnt = True
+            if itn <= 10:
+                prnt = True
+            if itn >= iter_lim-10:
+                prnt = True
+            # if itn%10 == 0: prnt = True
+            if test3 <= 2*ctol:
+                prnt = True
+            if test2 <= 10*atol:
+                prnt = True
+            if test1 <= 10*rtol:
+                prnt = True
+            if istop != 0:
+                prnt = True
+
+            if prnt:
+                str1 = f'{itn:6g} {x[0]:12.5e}'
+                str2 = f' {r1norm:10.3e} {r2norm:10.3e}'
+                str3 = f'  {test1:8.1e} {test2:8.1e}'
+                str4 = f' {anorm:8.1e} {acond:8.1e}'
+                print(str1, str2, str3, str4)
+
+        if istop != 0:
+            break
+
+    # End of iteration loop.
+    # Print the stopping condition.
+    if show:
+        print(' ')
+        print('LSQR finished')
+        print(msg[istop])
+        print(' ')
+        str1 = f'istop ={istop:8g}   r1norm ={r1norm:8.1e}'
+        str2 = f'anorm ={anorm:8.1e}   arnorm ={arnorm:8.1e}'
+        str3 = f'itn   ={itn:8g}   r2norm ={r2norm:8.1e}'
+        str4 = f'acond ={acond:8.1e}   xnorm  ={xnorm:8.1e}'
+        print(str1 + '   ' + str2)
+        print(str3 + '   ' + str4)
+        print(' ')
+
+    return x, istop, itn, r1norm, r2norm, anorm, acond, arnorm, xnorm, var

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/minres.py

@@ -0,0 +1,372 @@
+from numpy import inner, zeros, inf, finfo
+from numpy.linalg import norm
+from math import sqrt
+
+from .utils import make_system
+
+__all__ = ['minres']
+
+
+def minres(A, b, x0=None, *, rtol=1e-5, shift=0.0, maxiter=None,
+           M=None, callback=None, show=False, check=False):
+    """
+    Use MINimum RESidual iteration to solve Ax=b
+
+    MINRES minimizes norm(Ax - b) for a real symmetric matrix A.  Unlike
+    the Conjugate Gradient method, A can be indefinite or singular.
+
+    If shift != 0 then the method solves (A - shift*I)x = b
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real symmetric N-by-N matrix of the linear system
+        Alternatively, ``A`` can be a linear operator which can
+        produce ``Ax`` using, e.g.,
+        ``scipy.sparse.linalg.LinearOperator``.
+    b : ndarray
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+
+    Returns
+    -------
+    x : ndarray
+        The converged solution.
+    info : integer
+        Provides convergence information:
+            0  : successful exit
+            >0 : convergence to tolerance not achieved, number of iterations
+            <0 : illegal input or breakdown
+
+    Other Parameters
+    ----------------
+    x0 : ndarray
+        Starting guess for the solution.
+    shift : float
+        Value to apply to the system ``(A - shift * I)x = b``. Default is 0.
+    rtol : float
+        Tolerance to achieve. The algorithm terminates when the relative
+        residual is below ``rtol``.
+    maxiter : integer
+        Maximum number of iterations.  Iteration will stop after maxiter
+        steps even if the specified tolerance has not been achieved.
+    M : {sparse array, ndarray, LinearOperator}
+        Preconditioner for A.  The preconditioner should approximate the
+        inverse of A.  Effective preconditioning dramatically improves the
+        rate of convergence, which implies that fewer iterations are needed
+        to reach a given error tolerance.
+    callback : function
+        User-supplied function to call after each iteration.  It is called
+        as callback(xk), where xk is the current solution vector.
+    show : bool
+        If ``True``, print out a summary and metrics related to the solution
+        during iterations. Default is ``False``.
+    check : bool
+        If ``True``, run additional input validation to check that `A` and
+        `M` (if specified) are symmetric. Default is ``False``.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import minres
+    >>> A = csc_array([[3, 2, 0], [1, -1, 0], [0, 5, 1]], dtype=float)
+    >>> A = A + A.T
+    >>> b = np.array([2, 4, -1], dtype=float)
+    >>> x, exitCode = minres(A, b)
+    >>> print(exitCode)            # 0 indicates successful convergence
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+
+    References
+    ----------
+    Solution of sparse indefinite systems of linear equations,
+        C. C. Paige and M. A. Saunders (1975),
+        SIAM J. Numer. Anal. 12(4), pp. 617-629.
+        https://web.stanford.edu/group/SOL/software/minres/
+
+    This file is a translation of the following MATLAB implementation:
+        https://web.stanford.edu/group/SOL/software/minres/minres-matlab.zip
+
+    """
+    A, M, x, b, postprocess = make_system(A, M, x0, b)
+
+    matvec = A.matvec
+    psolve = M.matvec
+
+    first = 'Enter minres.   '
+    last = 'Exit  minres.   '
+
+    n = A.shape[0]
+
+    if maxiter is None:
+        maxiter = 5 * n
+
+    msg = [' beta2 = 0.  If M = I, b and x are eigenvectors    ',   # -1
+            ' beta1 = 0.  The exact solution is x0          ',   # 0
+            ' A solution to Ax = b was found, given rtol        ',   # 1
+            ' A least-squares solution was found, given rtol    ',   # 2
+            ' Reasonable accuracy achieved, given eps           ',   # 3
+            ' x has converged to an eigenvector                 ',   # 4
+            ' acond has exceeded 0.1/eps                        ',   # 5
+            ' The iteration limit was reached                   ',   # 6
+            ' A  does not define a symmetric matrix             ',   # 7
+            ' M  does not define a symmetric matrix             ',   # 8
+            ' M  does not define a pos-def preconditioner       ']   # 9
+
+    if show:
+        print(first + 'Solution of symmetric Ax = b')
+        print(first + f'n      =  {n:3g}     shift  =  {shift:23.14e}')
+        print(first + f'itnlim =  {maxiter:3g}     rtol   =  {rtol:11.2e}')
+        print()
+
+    istop = 0
+    itn = 0
+    Anorm = 0
+    Acond = 0
+    rnorm = 0
+    ynorm = 0
+
+    xtype = x.dtype
+
+    eps = finfo(xtype).eps
+
+    # Set up y and v for the first Lanczos vector v1.
+    # y  =  beta1 P' v1,  where  P = C**(-1).
+    # v is really P' v1.
+
+    if x0 is None:
+        r1 = b.copy()
+    else:
+        r1 = b - A@x
+    y = psolve(r1)
+
+    beta1 = inner(r1, y)
+
+    if beta1 < 0:
+        raise ValueError('indefinite preconditioner')
+    elif beta1 == 0:
+        return (postprocess(x), 0)
+
+    bnorm = norm(b)
+    if bnorm == 0:
+        x = b
+        return (postprocess(x), 0)
+
+    beta1 = sqrt(beta1)
+
+    if check:
+        # are these too strict?
+
+        # see if A is symmetric
+        w = matvec(y)
+        r2 = matvec(w)
+        s = inner(w,w)
+        t = inner(y,r2)
+        z = abs(s - t)
+        epsa = (s + eps) * eps**(1.0/3.0)
+        if z > epsa:
+            raise ValueError('non-symmetric matrix')
+
+        # see if M is symmetric
+        r2 = psolve(y)
+        s = inner(y,y)
+        t = inner(r1,r2)
+        z = abs(s - t)
+        epsa = (s + eps) * eps**(1.0/3.0)
+        if z > epsa:
+            raise ValueError('non-symmetric preconditioner')
+
+    # Initialize other quantities
+    oldb = 0
+    beta = beta1
+    dbar = 0
+    epsln = 0
+    qrnorm = beta1
+    phibar = beta1
+    rhs1 = beta1
+    rhs2 = 0
+    tnorm2 = 0
+    gmax = 0
+    gmin = finfo(xtype).max
+    cs = -1
+    sn = 0
+    w = zeros(n, dtype=xtype)
+    w2 = zeros(n, dtype=xtype)
+    r2 = r1
+
+    if show:
+        print()
+        print()
+        print('   Itn     x(1)     Compatible    LS       norm(A)  cond(A) gbar/|A|')
+
+    while itn < maxiter:
+        itn += 1
+
+        s = 1.0/beta
+        v = s*y
+
+        y = matvec(v)
+        y = y - shift * v
+
+        if itn >= 2:
+            y = y - (beta/oldb)*r1
+
+        alfa = inner(v,y)
+        y = y - (alfa/beta)*r2
+        r1 = r2
+        r2 = y
+        y = psolve(r2)
+        oldb = beta
+        beta = inner(r2,y)
+        if beta < 0:
+            raise ValueError('non-symmetric matrix')
+        beta = sqrt(beta)
+        tnorm2 += alfa**2 + oldb**2 + beta**2
+
+        if itn == 1:
+            if beta/beta1 <= 10*eps:
+                istop = -1  # Terminate later
+
+        # Apply previous rotation Qk-1 to get
+        #   [deltak epslnk+1] = [cs  sn][dbark    0   ]
+        #   [gbar k dbar k+1]   [sn -cs][alfak betak+1].
+
+        oldeps = epsln
+        delta = cs * dbar + sn * alfa   # delta1 = 0         deltak
+        gbar = sn * dbar - cs * alfa   # gbar 1 = alfa1     gbar k
+        epsln = sn * beta     # epsln2 = 0         epslnk+1
+        dbar = - cs * beta   # dbar 2 = beta2     dbar k+1
+        root = norm([gbar, dbar])
+        Arnorm = phibar * root
+
+        # Compute the next plane rotation Qk
+
+        gamma = norm([gbar, beta])       # gammak
+        gamma = max(gamma, eps)
+        cs = gbar / gamma             # ck
+        sn = beta / gamma             # sk
+        phi = cs * phibar              # phik
+        phibar = sn * phibar              # phibark+1
+
+        # Update  x.
+
+        denom = 1.0/gamma
+        w1 = w2
+        w2 = w
+        w = (v - oldeps*w1 - delta*w2) * denom
+        x = x + phi*w
+
+        # Go round again.
+
+        gmax = max(gmax, gamma)
+        gmin = min(gmin, gamma)
+        z = rhs1 / gamma
+        rhs1 = rhs2 - delta*z
+        rhs2 = - epsln*z
+
+        # Estimate various norms and test for convergence.
+
+        Anorm = sqrt(tnorm2)
+        ynorm = norm(x)
+        epsa = Anorm * eps
+        epsx = Anorm * ynorm * eps
+        epsr = Anorm * ynorm * rtol
+        diag = gbar
+
+        if diag == 0:
+            diag = epsa
+
+        qrnorm = phibar
+        rnorm = qrnorm
+        if ynorm == 0 or Anorm == 0:
+            test1 = inf
+        else:
+            test1 = rnorm / (Anorm*ynorm)    # ||r||  / (||A|| ||x||)
+        if Anorm == 0:
+            test2 = inf
+        else:
+            test2 = root / Anorm            # ||Ar|| / (||A|| ||r||)
+
+        # Estimate  cond(A).
+        # In this version we look at the diagonals of  R  in the
+        # factorization of the lower Hessenberg matrix,  Q @ H = R,
+        # where H is the tridiagonal matrix from Lanczos with one
+        # extra row, beta(k+1) e_k^T.
+
+        Acond = gmax/gmin
+
+        # See if any of the stopping criteria are satisfied.
+        # In rare cases, istop is already -1 from above (Abar = const*I).
+
+        if istop == 0:
+            t1 = 1 + test1      # These tests work if rtol < eps
+            t2 = 1 + test2
+            if t2 <= 1:
+                istop = 2
+            if t1 <= 1:
+                istop = 1
+
+            if itn >= maxiter:
+                istop = 6
+            if Acond >= 0.1/eps:
+                istop = 4
+            if epsx >= beta1:
+                istop = 3
+            # if rnorm <= epsx   : istop = 2
+            # if rnorm <= epsr   : istop = 1
+            if test2 <= rtol:
+                istop = 2
+            if test1 <= rtol:
+                istop = 1
+
+        # See if it is time to print something.
+
+        prnt = False
+        if n <= 40:
+            prnt = True
+        if itn <= 10:
+            prnt = True
+        if itn >= maxiter-10:
+            prnt = True
+        if itn % 10 == 0:
+            prnt = True
+        if qrnorm <= 10*epsx:
+            prnt = True
+        if qrnorm <= 10*epsr:
+            prnt = True
+        if Acond <= 1e-2/eps:
+            prnt = True
+        if istop != 0:
+            prnt = True
+
+        if show and prnt:
+            str1 = f'{itn:6g} {x[0]:12.5e} {test1:10.3e}'
+            str2 = f' {test2:10.3e}'
+            str3 = f' {Anorm:8.1e} {Acond:8.1e} {gbar/Anorm:8.1e}'
+
+            print(str1 + str2 + str3)
+
+            if itn % 10 == 0:
+                print()
+
+        if callback is not None:
+            callback(x)
+
+        if istop != 0:
+            break  # TODO check this
+
+    if show:
+        print()
+        print(last + f' istop   =  {istop:3g}               itn   ={itn:5g}')
+        print(last + f' Anorm   =  {Anorm:12.4e}      Acond =  {Acond:12.4e}')
+        print(last + f' rnorm   =  {rnorm:12.4e}      ynorm =  {ynorm:12.4e}')
+        print(last + f' Arnorm  =  {Arnorm:12.4e}')
+        print(last + msg[istop+1])
+
+    if istop == 6:
+        info = maxiter
+    else:
+        info = 0
+
+    return (postprocess(x),info)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/tests/test_gcrotmk.py

@@ -0,0 +1,183 @@
+#!/usr/bin/env python
+"""Tests for the linalg._isolve.gcrotmk module
+"""
+
+import threading
+from numpy.testing import (assert_, assert_allclose, assert_equal,
+                           suppress_warnings)
+
+import numpy as np
+from numpy import zeros, array, allclose
+from scipy.linalg import norm
+from scipy.sparse import csr_array, eye_array, random_array
+
+from scipy.sparse.linalg._interface import LinearOperator
+from scipy.sparse.linalg import splu
+from scipy.sparse.linalg._isolve import gcrotmk, gmres
+
+
+Am = csr_array(array([[-2,1,0,0,0,9],
+                       [1,-2,1,0,5,0],
+                       [0,1,-2,1,0,0],
+                       [0,0,1,-2,1,0],
+                       [0,3,0,1,-2,1],
+                       [1,0,0,0,1,-2]]))
+b = array([1,2,3,4,5,6])
+count = threading.local()  # [0]
+niter = threading.local()  # [0]
+
+
+def matvec(v):
+    if not hasattr(count, 'c'):
+        count.c = [0]
+    count.c[0] += 1
+    return Am@v
+
+
+def cb(v):
+    if not hasattr(niter, 'n'):
+        niter.n = [0]
+    niter.n[0] += 1
+
+
+A = LinearOperator(matvec=matvec, shape=Am.shape, dtype=Am.dtype)
+
+
+def do_solve(**kw):
+    if not hasattr(niter, 'n'):
+        niter.n = [0]
+
+    if not hasattr(count, 'c'):
+        count.c = [0]
+
+    count.c[0] = 0
+    with suppress_warnings() as sup:
+        sup.filter(DeprecationWarning, ".*called without specifying.*")
+        x0, flag = gcrotmk(A, b, x0=zeros(A.shape[0]), rtol=1e-14, **kw)
+    count_0 = count.c[0]
+    assert_(allclose(A@x0, b, rtol=1e-12, atol=1e-12), norm(A@x0-b))
+    return x0, count_0
+
+
+class TestGCROTMK:
+    def test_preconditioner(self):
+        # Check that preconditioning works
+        pc = splu(Am.tocsc())
+        M = LinearOperator(matvec=pc.solve, shape=A.shape, dtype=A.dtype)
+
+        x0, count_0 = do_solve()
+        niter.n[0] = 0
+        x1, count_1 = do_solve(M=M, callback=cb)
+
+        assert_equal(count_1, 3)
+        assert count_1 < count_0/2
+        assert allclose(x1, x0, rtol=1e-14)
+        assert niter.n[0] < 3
+
+    def test_arnoldi(self):
+        rng = np.random.default_rng(1)
+
+        A = eye_array(2000) + random_array((2000, 2000), density=5e-4, rng=rng)
+        b = rng.random(2000)
+
+        # The inner arnoldi should be equivalent to gmres
+        with suppress_warnings() as sup:
+            sup.filter(DeprecationWarning, ".*called without specifying.*")
+            x0, flag0 = gcrotmk(A, b, x0=zeros(A.shape[0]), m=10, k=0, maxiter=1)
+            x1, flag1 = gmres(A, b, x0=zeros(A.shape[0]), restart=10, maxiter=1)
+
+        assert_equal(flag0, 1)
+        assert_equal(flag1, 1)
+        assert np.linalg.norm(A.dot(x0) - b) > 1e-4
+
+        assert_allclose(x0, x1)
+
+    def test_cornercase(self):
+        np.random.seed(1234)
+
+        # Rounding error may prevent convergence with tol=0 --- ensure
+        # that the return values in this case are correct, and no
+        # exceptions are raised
+
+        for n in [3, 5, 10, 100]:
+            A = 2*eye_array(n)
+
+            with suppress_warnings() as sup:
+                sup.filter(DeprecationWarning, ".*called without specifying.*")
+                b = np.ones(n)
+                x, info = gcrotmk(A, b, maxiter=10)
+                assert_equal(info, 0)
+                assert_allclose(A.dot(x) - b, 0, atol=1e-14)
+
+                x, info = gcrotmk(A, b, rtol=0, maxiter=10)
+                if info == 0:
+                    assert_allclose(A.dot(x) - b, 0, atol=1e-14)
+
+                b = np.random.rand(n)
+                x, info = gcrotmk(A, b, maxiter=10)
+                assert_equal(info, 0)
+                assert_allclose(A.dot(x) - b, 0, atol=1e-14)
+
+                x, info = gcrotmk(A, b, rtol=0, maxiter=10)
+                if info == 0:
+                    assert_allclose(A.dot(x) - b, 0, atol=1e-14)
+
+    def test_nans(self):
+        A = eye_array(3, format='lil')
+        A[1,1] = np.nan
+        b = np.ones(3)
+
+        with suppress_warnings() as sup:
+            sup.filter(DeprecationWarning, ".*called without specifying.*")
+            x, info = gcrotmk(A, b, rtol=0, maxiter=10)
+            assert_equal(info, 1)
+
+    def test_truncate(self):
+        np.random.seed(1234)
+        A = np.random.rand(30, 30) + np.eye(30)
+        b = np.random.rand(30)
+
+        for truncate in ['oldest', 'smallest']:
+            with suppress_warnings() as sup:
+                sup.filter(DeprecationWarning, ".*called without specifying.*")
+                x, info = gcrotmk(A, b, m=10, k=10, truncate=truncate,
+                                  rtol=1e-4, maxiter=200)
+            assert_equal(info, 0)
+            assert_allclose(A.dot(x) - b, 0, atol=1e-3)
+
+    def test_CU(self):
+        for discard_C in (True, False):
+            # Check that C,U behave as expected
+            CU = []
+            x0, count_0 = do_solve(CU=CU, discard_C=discard_C)
+            assert_(len(CU) > 0)
+            assert_(len(CU) <= 6)
+
+            if discard_C:
+                for c, u in CU:
+                    assert_(c is None)
+
+            # should converge immediately
+            x1, count_1 = do_solve(CU=CU, discard_C=discard_C)
+            if discard_C:
+                assert_equal(count_1, 2 + len(CU))
+            else:
+                assert_equal(count_1, 3)
+            assert_(count_1 <= count_0/2)
+            assert_allclose(x1, x0, atol=1e-14)
+
+    def test_denormals(self):
+        # Check that no warnings are emitted if the matrix contains
+        # numbers for which 1/x has no float representation, and that
+        # the solver behaves properly.
+        A = np.array([[1, 2], [3, 4]], dtype=float)
+        A *= 100 * np.nextafter(0, 1)
+
+        b = np.array([1, 1])
+
+        with suppress_warnings() as sup:
+            sup.filter(DeprecationWarning, ".*called without specifying.*")
+            xp, info = gcrotmk(A, b)
+
+        if info == 0:
+            assert_allclose(A.dot(xp), b)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/tests/test_iterative.py

@@ -0,0 +1,809 @@
+""" Test functions for the sparse.linalg._isolve module
+"""
+
+import itertools
+import platform
+import pytest
+
+import numpy as np
+from numpy.testing import assert_array_equal, assert_allclose
+from numpy import zeros, arange, array, ones, eye, iscomplexobj
+from numpy.linalg import norm
+
+from scipy.sparse import dia_array, csr_array, kronsum
+
+from scipy.sparse.linalg import LinearOperator, aslinearoperator
+from scipy.sparse.linalg._isolve import (bicg, bicgstab, cg, cgs,
+                                         gcrotmk, gmres, lgmres,
+                                         minres, qmr, tfqmr)
+
+# TODO check that method preserve shape and type
+# TODO test both preconditioner methods
+
+
+# list of all solvers under test
+_SOLVERS = [bicg, bicgstab, cg, cgs, gcrotmk, gmres, lgmres,
+            minres, qmr, tfqmr]
+
+CB_TYPE_FILTER = ".*called without specifying `callback_type`.*"
+
+
+# create parametrized fixture for easy reuse in tests
+@pytest.fixture(params=_SOLVERS, scope="session")
+def solver(request):
+    """
+    Fixture for all solvers in scipy.sparse.linalg._isolve
+    """
+    return request.param
+
+
+class Case:
+    def __init__(self, name, A, b=None, skip=None, nonconvergence=None):
+        self.name = name
+        self.A = A
+        if b is None:
+            self.b = arange(A.shape[0], dtype=float)
+        else:
+            self.b = b
+        if skip is None:
+            self.skip = []
+        else:
+            self.skip = skip
+        if nonconvergence is None:
+            self.nonconvergence = []
+        else:
+            self.nonconvergence = nonconvergence
+
+
+class SingleTest:
+    def __init__(self, A, b, solver, casename, convergence=True):
+        self.A = A
+        self.b = b
+        self.solver = solver
+        self.name = casename + '-' + solver.__name__
+        self.convergence = convergence
+
+    def __repr__(self):
+        return f"<{self.name}>"
+
+
+class IterativeParams:
+    def __init__(self):
+        sym_solvers = [minres, cg]
+        posdef_solvers = [cg]
+        real_solvers = [minres]
+
+        # list of Cases
+        self.cases = []
+
+        # Symmetric and Positive Definite
+        N = 40
+        data = ones((3, N))
+        data[0, :] = 2
+        data[1, :] = -1
+        data[2, :] = -1
+        Poisson1D = dia_array((data, [0, -1, 1]), shape=(N, N)).tocsr()
+        self.cases.append(Case("poisson1d", Poisson1D))
+        # note: minres fails for single precision
+        self.cases.append(Case("poisson1d-F", Poisson1D.astype('f'),
+                               skip=[minres]))
+
+        # Symmetric and Negative Definite
+        self.cases.append(Case("neg-poisson1d", -Poisson1D,
+                               skip=posdef_solvers))
+        # note: minres fails for single precision
+        self.cases.append(Case("neg-poisson1d-F", (-Poisson1D).astype('f'),
+                               skip=posdef_solvers + [minres]))
+
+        # 2-dimensional Poisson equations
+        Poisson2D = kronsum(Poisson1D, Poisson1D)
+        # note: minres fails for 2-d poisson problem,
+        # it will be fixed in the future PR
+        self.cases.append(Case("poisson2d", Poisson2D, skip=[minres]))
+        # note: minres fails for single precision
+        self.cases.append(Case("poisson2d-F", Poisson2D.astype('f'),
+                               skip=[minres]))
+
+        # Symmetric and Indefinite
+        data = array([[6, -5, 2, 7, -1, 10, 4, -3, -8, 9]], dtype='d')
+        RandDiag = dia_array((data, [0]), shape=(10, 10)).tocsr()
+        self.cases.append(Case("rand-diag", RandDiag, skip=posdef_solvers))
+        self.cases.append(Case("rand-diag-F", RandDiag.astype('f'),
+                               skip=posdef_solvers))
+
+        # Random real-valued
+        rng = np.random.RandomState(1234)
+        data = rng.rand(4, 4)
+        self.cases.append(Case("rand", data,
+                               skip=posdef_solvers + sym_solvers))
+        self.cases.append(Case("rand-F", data.astype('f'),
+                               skip=posdef_solvers + sym_solvers))
+
+        # Random symmetric real-valued
+        rng = np.random.RandomState(1234)
+        data = rng.rand(4, 4)
+        data = data + data.T
+        self.cases.append(Case("rand-sym", data, skip=posdef_solvers))
+        self.cases.append(Case("rand-sym-F", data.astype('f'),
+                               skip=posdef_solvers))
+
+        # Random pos-def symmetric real
+        np.random.seed(1234)
+        data = np.random.rand(9, 9)
+        data = np.dot(data.conj(), data.T)
+        self.cases.append(Case("rand-sym-pd", data))
+        # note: minres fails for single precision
+        self.cases.append(Case("rand-sym-pd-F", data.astype('f'),
+                               skip=[minres]))
+
+        # Random complex-valued
+        rng = np.random.RandomState(1234)
+        data = rng.rand(4, 4) + 1j * rng.rand(4, 4)
+        skip_cmplx = posdef_solvers + sym_solvers + real_solvers
+        self.cases.append(Case("rand-cmplx", data, skip=skip_cmplx))
+        self.cases.append(Case("rand-cmplx-F", data.astype('F'),
+                               skip=skip_cmplx))
+
+        # Random hermitian complex-valued
+        rng = np.random.RandomState(1234)
+        data = rng.rand(4, 4) + 1j * rng.rand(4, 4)
+        data = data + data.T.conj()
+        self.cases.append(Case("rand-cmplx-herm", data,
+                               skip=posdef_solvers + real_solvers))
+        self.cases.append(Case("rand-cmplx-herm-F", data.astype('F'),
+                               skip=posdef_solvers + real_solvers))
+
+        # Random pos-def hermitian complex-valued
+        rng = np.random.RandomState(1234)
+        data = rng.rand(9, 9) + 1j * rng.rand(9, 9)
+        data = np.dot(data.conj(), data.T)
+        self.cases.append(Case("rand-cmplx-sym-pd", data, skip=real_solvers))
+        self.cases.append(Case("rand-cmplx-sym-pd-F", data.astype('F'),
+                               skip=real_solvers))
+
+        # Non-symmetric and Positive Definite
+        #
+        # cgs, qmr, bicg and tfqmr fail to converge on this one
+        #   -- algorithmic limitation apparently
+        data = ones((2, 10))
+        data[0, :] = 2
+        data[1, :] = -1
+        A = dia_array((data, [0, -1]), shape=(10, 10)).tocsr()
+        self.cases.append(Case("nonsymposdef", A,
+                               skip=sym_solvers + [cgs, qmr, bicg, tfqmr]))
+        self.cases.append(Case("nonsymposdef-F", A.astype('F'),
+                               skip=sym_solvers + [cgs, qmr, bicg, tfqmr]))
+
+        # Symmetric, non-pd, hitting cgs/bicg/bicgstab/qmr/tfqmr breakdown
+        A = np.array([[0, 0, 0, 0, 0, 1, -1, -0, -0, -0, -0],
+                      [0, 0, 0, 0, 0, 2, -0, -1, -0, -0, -0],
+                      [0, 0, 0, 0, 0, 2, -0, -0, -1, -0, -0],
+                      [0, 0, 0, 0, 0, 2, -0, -0, -0, -1, -0],
+                      [0, 0, 0, 0, 0, 1, -0, -0, -0, -0, -1],
+                      [1, 2, 2, 2, 1, 0, -0, -0, -0, -0, -0],
+                      [-1, 0, 0, 0, 0, 0, -1, -0, -0, -0, -0],
+                      [0, -1, 0, 0, 0, 0, -0, -1, -0, -0, -0],
+                      [0, 0, -1, 0, 0, 0, -0, -0, -1, -0, -0],
+                      [0, 0, 0, -1, 0, 0, -0, -0, -0, -1, -0],
+                      [0, 0, 0, 0, -1, 0, -0, -0, -0, -0, -1]], dtype=float)
+        b = np.array([0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0], dtype=float)
+        assert (A == A.T).all()
+        self.cases.append(Case("sym-nonpd", A, b,
+                               skip=posdef_solvers,
+                               nonconvergence=[cgs, bicg, bicgstab, qmr, tfqmr]
+                               )
+                          )
+
+    def generate_tests(self):
+        # generate test cases with skips applied
+        tests = []
+        for case in self.cases:
+            for solver in _SOLVERS:
+                if (solver in case.skip):
+                    continue
+                if solver in case.nonconvergence:
+                    tests += [SingleTest(case.A, case.b, solver, case.name,
+                                         convergence=False)]
+                else:
+                    tests += [SingleTest(case.A, case.b, solver, case.name)]
+        return tests
+
+
+cases = IterativeParams().generate_tests()
+
+
+@pytest.fixture(params=cases, ids=[x.name for x in cases], scope="module")
+def case(request):
+    """
+    Fixture for all cases in IterativeParams
+    """
+    return request.param
+
+@pytest.mark.thread_unsafe
+def test_maxiter(case):
+    if not case.convergence:
+        pytest.skip("Solver - Breakdown case, see gh-8829")
+    A = case.A
+    rtol = 1e-12
+
+    b = case.b
+    x0 = 0 * b
+
+    residuals = []
+
+    def callback(x):
+        if x.ndim == 0:
+            residuals.append(norm(b - case.A * x))
+        else:
+            residuals.append(norm(b - case.A @ x))
+
+    if case.solver == gmres:
+        with pytest.warns(DeprecationWarning, match=CB_TYPE_FILTER):
+            x, info = case.solver(A, b, x0=x0, rtol=rtol, maxiter=1, callback=callback)
+    else:
+        x, info = case.solver(A, b, x0=x0, rtol=rtol, maxiter=1, callback=callback)
+
+    assert len(residuals) == 1
+    assert info == 1
+
+
+def test_convergence(case):
+    A = case.A
+
+    if A.dtype.char in "dD":
+        rtol = 1e-8
+    else:
+        rtol = 1e-2
+
+    b = case.b
+    x0 = 0 * b
+
+    x, info = case.solver(A, b, x0=x0, rtol=rtol)
+
+    assert_array_equal(x0, 0 * b)  # ensure that x0 is not overwritten
+    if case.convergence:
+        assert info == 0
+        assert norm(A @ x - b) <= norm(b) * rtol
+    else:
+        assert info != 0
+        assert norm(A @ x - b) <= norm(b)
+
+
+def test_precond_dummy(case):
+    if not case.convergence:
+        pytest.skip("Solver - Breakdown case, see gh-8829")
+
+    rtol = 1e-8
+
+    def identity(b, which=None):
+        """trivial preconditioner"""
+        return b
+
+    A = case.A
+
+    M, N = A.shape
+    # Ensure the diagonal elements of A are non-zero before calculating
+    # 1.0/A.diagonal()
+    diagOfA = A.diagonal()
+    if np.count_nonzero(diagOfA) == len(diagOfA):
+        dia_array(([1.0 / diagOfA], [0]), shape=(M, N))
+
+    b = case.b
+    x0 = 0 * b
+
+    precond = LinearOperator(A.shape, identity, rmatvec=identity)
+
+    if case.solver is qmr:
+        x, info = case.solver(A, b, M1=precond, M2=precond, x0=x0, rtol=rtol)
+    else:
+        x, info = case.solver(A, b, M=precond, x0=x0, rtol=rtol)
+    assert info == 0
+    assert norm(A @ x - b) <= norm(b) * rtol
+
+    A = aslinearoperator(A)
+    A.psolve = identity
+    A.rpsolve = identity
+
+    x, info = case.solver(A, b, x0=x0, rtol=rtol)
+    assert info == 0
+    assert norm(A @ x - b) <= norm(b) * rtol
+
+
+# Specific test for poisson1d and poisson2d cases
+@pytest.mark.fail_slow(10)
+@pytest.mark.parametrize('case', [x for x in IterativeParams().cases
+                                  if x.name in ('poisson1d', 'poisson2d')],
+                         ids=['poisson1d', 'poisson2d'])
+def test_precond_inverse(case):
+    for solver in _SOLVERS:
+        if solver in case.skip or solver is qmr:
+            continue
+
+        rtol = 1e-8
+
+        def inverse(b, which=None):
+            """inverse preconditioner"""
+            A = case.A
+            if not isinstance(A, np.ndarray):
+                A = A.toarray()
+            return np.linalg.solve(A, b)
+
+        def rinverse(b, which=None):
+            """inverse preconditioner"""
+            A = case.A
+            if not isinstance(A, np.ndarray):
+                A = A.toarray()
+            return np.linalg.solve(A.T, b)
+
+        matvec_count = [0]
+
+        def matvec(b):
+            matvec_count[0] += 1
+            return case.A @ b
+
+        def rmatvec(b):
+            matvec_count[0] += 1
+            return case.A.T @ b
+
+        b = case.b
+        x0 = 0 * b
+
+        A = LinearOperator(case.A.shape, matvec, rmatvec=rmatvec)
+        precond = LinearOperator(case.A.shape, inverse, rmatvec=rinverse)
+
+        # Solve with preconditioner
+        matvec_count = [0]
+        x, info = solver(A, b, M=precond, x0=x0, rtol=rtol)
+
+        assert info == 0
+        assert norm(case.A @ x - b) <= norm(b) * rtol
+
+        # Solution should be nearly instant
+        assert matvec_count[0] <= 3
+
+
+def test_atol(solver):
+    # TODO: minres / tfqmr. It didn't historically use absolute tolerances, so
+    # fixing it is less urgent.
+    if solver in (minres, tfqmr):
+        pytest.skip("TODO: Add atol to minres/tfqmr")
+
+    # Historically this is tested as below, all pass but for some reason
+    # gcrotmk is over-sensitive to difference between random.seed/rng.random
+    # Hence tol lower bound is changed from -10 to -9
+    # np.random.seed(1234)
+    # A = np.random.rand(10, 10)
+    # A = A @ A.T + 10 * np.eye(10)
+    # b = 1e3*np.random.rand(10)
+
+    rng = np.random.default_rng(168441431005389)
+    A = rng.uniform(size=[10, 10])
+    A = A @ A.T + 10*np.eye(10)
+    b = 1e3 * rng.uniform(size=10)
+
+    b_norm = np.linalg.norm(b)
+
+    tols = np.r_[0, np.logspace(-9, 2, 7), np.inf]
+
+    # Check effect of badly scaled preconditioners
+    M0 = rng.standard_normal(size=(10, 10))
+    M0 = M0 @ M0.T
+    Ms = [None, 1e-6 * M0, 1e6 * M0]
+
+    for M, rtol, atol in itertools.product(Ms, tols, tols):
+        if rtol == 0 and atol == 0:
+            continue
+
+        if solver is qmr:
+            if M is not None:
+                M = aslinearoperator(M)
+                M2 = aslinearoperator(np.eye(10))
+            else:
+                M2 = None
+            x, info = solver(A, b, M1=M, M2=M2, rtol=rtol, atol=atol)
+        else:
+            x, info = solver(A, b, M=M, rtol=rtol, atol=atol)
+
+        assert info == 0
+        residual = A @ x - b
+        err = np.linalg.norm(residual)
+        atol2 = rtol * b_norm
+        # Added 1.00025 fudge factor because of `err` exceeding `atol` just
+        # very slightly on s390x (see gh-17839)
+        assert err <= 1.00025 * max(atol, atol2)
+
+
+def test_zero_rhs(solver):
+    rng = np.random.default_rng(1684414984100503)
+    A = rng.random(size=[10, 10])
+    A = A @ A.T + 10 * np.eye(10)
+
+    b = np.zeros(10)
+    tols = np.r_[np.logspace(-10, 2, 7)]
+
+    for tol in tols:
+        x, info = solver(A, b, rtol=tol)
+        assert info == 0
+        assert_allclose(x, 0., atol=1e-15)
+
+        x, info = solver(A, b, rtol=tol, x0=ones(10))
+        assert info == 0
+        assert_allclose(x, 0., atol=tol)
+
+        if solver is not minres:
+            x, info = solver(A, b, rtol=tol, atol=0, x0=ones(10))
+            if info == 0:
+                assert_allclose(x, 0)
+
+            x, info = solver(A, b, rtol=tol, atol=tol)
+            assert info == 0
+            assert_allclose(x, 0, atol=1e-300)
+
+            x, info = solver(A, b, rtol=tol, atol=0)
+            assert info == 0
+            assert_allclose(x, 0, atol=1e-300)
+
+
+@pytest.mark.xfail(reason="see gh-18697")
+def test_maxiter_worsening(solver):
+    if solver not in (gmres, lgmres, qmr):
+        # these were skipped from the very beginning, see gh-9201; gh-14160
+        pytest.skip("Solver breakdown case")
+    # Check error does not grow (boundlessly) with increasing maxiter.
+    # This can occur due to the solvers hitting close to breakdown,
+    # which they should detect and halt as necessary.
+    # cf. gh-9100
+    if (solver is lgmres and
+            platform.machine() not in ['x86_64' 'x86', 'aarch64', 'arm64']):
+        # see gh-17839
+        pytest.xfail(reason="fails on at least ppc64le, ppc64 and riscv64")
+
+    # Singular matrix, rhs numerically not in range
+    A = np.array([[-0.1112795288033378, 0, 0, 0.16127952880333685],
+                  [0, -0.13627952880333782 + 6.283185307179586j, 0, 0],
+                  [0, 0, -0.13627952880333782 - 6.283185307179586j, 0],
+                  [0.1112795288033368, 0j, 0j, -0.16127952880333785]])
+    v = np.ones(4)
+    best_error = np.inf
+
+    # Unable to match the Fortran code tolerance levels with this example
+    # Original tolerance values
+
+    # slack_tol = 7 if platform.machine() == 'aarch64' else 5
+    slack_tol = 9
+
+    for maxiter in range(1, 20):
+        x, info = solver(A, v, maxiter=maxiter, rtol=1e-8, atol=0)
+
+        if info == 0:
+            assert norm(A @ x - v) <= 1e-8 * norm(v)
+
+        error = np.linalg.norm(A @ x - v)
+        best_error = min(best_error, error)
+
+        # Check with slack
+        assert error <= slack_tol * best_error
+
+
+def test_x0_working(solver):
+    # Easy problem
+    rng = np.random.default_rng(1685363802304750)
+    n = 10
+    A = rng.random(size=[n, n])
+    A = A @ A.T
+    b = rng.random(n)
+    x0 = rng.random(n)
+
+    if solver is minres:
+        kw = dict(rtol=1e-6)
+    else:
+        kw = dict(atol=0, rtol=1e-6)
+
+    x, info = solver(A, b, **kw)
+    assert info == 0
+    assert norm(A @ x - b) <= 1e-6 * norm(b)
+
+    x, info = solver(A, b, x0=x0, **kw)
+    assert info == 0
+    assert norm(A @ x - b) <= 4.5e-6*norm(b)
+
+
+def test_x0_equals_Mb(case):
+    if (case.solver is bicgstab) and (case.name == 'nonsymposdef-bicgstab'):
+        pytest.skip("Solver fails due to numerical noise "
+                    "on some architectures (see gh-15533).")
+    if case.solver is tfqmr:
+        pytest.skip("Solver does not support x0='Mb'")
+
+    A = case.A
+    b = case.b
+    x0 = 'Mb'
+    rtol = 1e-8
+    x, info = case.solver(A, b, x0=x0, rtol=rtol)
+
+    assert_array_equal(x0, 'Mb')  # ensure that x0 is not overwritten
+    assert info == 0
+    assert norm(A @ x - b) <= rtol * norm(b)
+
+
+@pytest.mark.parametrize('solver', _SOLVERS)
+def test_x0_solves_problem_exactly(solver):
+    # See gh-19948
+    mat = np.eye(2)
+    rhs = np.array([-1., -1.])
+
+    sol, info = solver(mat, rhs, x0=rhs)
+    assert_allclose(sol, rhs)
+    assert info == 0
+
+
+# Specific tfqmr test
+@pytest.mark.thread_unsafe
+@pytest.mark.parametrize('case', IterativeParams().cases)
+def test_show(case, capsys):
+    def cb(x):
+        pass
+
+    x, info = tfqmr(case.A, case.b, callback=cb, show=True)
+    out, err = capsys.readouterr()
+
+    if case.name == "sym-nonpd":
+        # no logs for some reason
+        exp = ""
+    elif case.name in ("nonsymposdef", "nonsymposdef-F"):
+        # Asymmetric and Positive Definite
+        exp = "TFQMR: Linear solve not converged due to reach MAXIT iterations"
+    else:  # all other cases
+        exp = "TFQMR: Linear solve converged due to reach TOL iterations"
+
+    assert out.startswith(exp)
+    assert err == ""
+
+
+def test_positional_error(solver):
+    # from test_x0_working
+    rng = np.random.default_rng(1685363802304750)
+    n = 10
+    A = rng.random(size=[n, n])
+    A = A @ A.T
+    b = rng.random(n)
+    x0 = rng.random(n)
+    with pytest.raises(TypeError):
+        solver(A, b, x0, 1e-5)
+
+
+@pytest.mark.parametrize("atol", ["legacy", None, -1])
+def test_invalid_atol(solver, atol):
+    if solver == minres:
+        pytest.skip("minres has no `atol` argument")
+    # from test_x0_working
+    rng = np.random.default_rng(1685363802304750)
+    n = 10
+    A = rng.random(size=[n, n])
+    A = A @ A.T
+    b = rng.random(n)
+    x0 = rng.random(n)
+    with pytest.raises(ValueError):
+        solver(A, b, x0, atol=atol)
+
+
+class TestQMR:
+    @pytest.mark.filterwarnings('ignore::scipy.sparse.SparseEfficiencyWarning')
+    def test_leftright_precond(self):
+        """Check that QMR works with left and right preconditioners"""
+
+        from scipy.sparse.linalg._dsolve import splu
+        from scipy.sparse.linalg._interface import LinearOperator
+
+        n = 100
+
+        dat = ones(n)
+        A = dia_array(([-2 * dat, 4 * dat, -dat], [-1, 0, 1]), shape=(n, n))
+        b = arange(n, dtype='d')
+
+        L = dia_array(([-dat / 2, dat], [-1, 0]), shape=(n, n))
+        U = dia_array(([4 * dat, -dat], [0, 1]), shape=(n, n))
+        L_solver = splu(L)
+        U_solver = splu(U)
+
+        def L_solve(b):
+            return L_solver.solve(b)
+
+        def U_solve(b):
+            return U_solver.solve(b)
+
+        def LT_solve(b):
+            return L_solver.solve(b, 'T')
+
+        def UT_solve(b):
+            return U_solver.solve(b, 'T')
+
+        M1 = LinearOperator((n, n), matvec=L_solve, rmatvec=LT_solve)
+        M2 = LinearOperator((n, n), matvec=U_solve, rmatvec=UT_solve)
+
+        rtol = 1e-8
+        x, info = qmr(A, b, rtol=rtol, maxiter=15, M1=M1, M2=M2)
+
+        assert info == 0
+        assert norm(A @ x - b) <= rtol * norm(b)
+
+
+class TestGMRES:
+    def test_basic(self):
+        A = np.vander(np.arange(10) + 1)[:, ::-1]
+        b = np.zeros(10)
+        b[0] = 1
+
+        x_gm, err = gmres(A, b, restart=5, maxiter=1)
+
+        assert_allclose(x_gm[0], 0.359, rtol=1e-2)
+
+    @pytest.mark.filterwarnings(f"ignore:{CB_TYPE_FILTER}:DeprecationWarning")
+    def test_callback(self):
+
+        def store_residual(r, rvec):
+            rvec[rvec.nonzero()[0].max() + 1] = r
+
+        # Define, A,b
+        A = csr_array(array([[-2, 1, 0, 0, 0, 0],
+                             [1, -2, 1, 0, 0, 0],
+                             [0, 1, -2, 1, 0, 0],
+                             [0, 0, 1, -2, 1, 0],
+                             [0, 0, 0, 1, -2, 1],
+                             [0, 0, 0, 0, 1, -2]]))
+        b = ones((A.shape[0],))
+        maxiter = 1
+        rvec = zeros(maxiter + 1)
+        rvec[0] = 1.0
+
+        def callback(r):
+            return store_residual(r, rvec)
+
+        x, flag = gmres(A, b, x0=zeros(A.shape[0]), rtol=1e-16,
+                        maxiter=maxiter, callback=callback)
+
+        # Expected output from SciPy 1.0.0
+        assert_allclose(rvec, array([1.0, 0.81649658092772603]), rtol=1e-10)
+
+        # Test preconditioned callback
+        M = 1e-3 * np.eye(A.shape[0])
+        rvec = zeros(maxiter + 1)
+        rvec[0] = 1.0
+        x, flag = gmres(A, b, M=M, rtol=1e-16, maxiter=maxiter,
+                        callback=callback)
+
+        # Expected output from SciPy 1.0.0
+        # (callback has preconditioned residual!)
+        assert_allclose(rvec, array([1.0, 1e-3 * 0.81649658092772603]),
+                        rtol=1e-10)
+
+    def test_abi(self):
+        # Check we don't segfault on gmres with complex argument
+        A = eye(2)
+        b = ones(2)
+        r_x, r_info = gmres(A, b)
+        r_x = r_x.astype(complex)
+        x, info = gmres(A.astype(complex), b.astype(complex))
+
+        assert iscomplexobj(x)
+        assert_allclose(r_x, x)
+        assert r_info == info
+
+    @pytest.mark.fail_slow(10)
+    def test_atol_legacy(self):
+
+        A = eye(2)
+        b = ones(2)
+        x, info = gmres(A, b, rtol=1e-5)
+        assert np.linalg.norm(A @ x - b) <= 1e-5 * np.linalg.norm(b)
+        assert_allclose(x, b, atol=0, rtol=1e-8)
+
+        rndm = np.random.RandomState(12345)
+        A = rndm.rand(30, 30)
+        b = 1e-6 * ones(30)
+        x, info = gmres(A, b, rtol=1e-7, restart=20)
+        assert np.linalg.norm(A @ x - b) > 1e-7
+
+        A = eye(2)
+        b = 1e-10 * ones(2)
+        x, info = gmres(A, b, rtol=1e-8, atol=0)
+        assert np.linalg.norm(A @ x - b) <= 1e-8 * np.linalg.norm(b)
+
+    def test_defective_precond_breakdown(self):
+        # Breakdown due to defective preconditioner
+        M = np.eye(3)
+        M[2, 2] = 0
+
+        b = np.array([0, 1, 1])
+        x = np.array([1, 0, 0])
+        A = np.diag([2, 3, 4])
+
+        x, info = gmres(A, b, x0=x, M=M, rtol=1e-15, atol=0)
+
+        # Should not return nans, nor terminate with false success
+        assert not np.isnan(x).any()
+        if info == 0:
+            assert np.linalg.norm(A @ x - b) <= 1e-15 * np.linalg.norm(b)
+
+        # The solution should be OK outside null space of M
+        assert_allclose(M @ (A @ x), M @ b)
+
+    def test_defective_matrix_breakdown(self):
+        # Breakdown due to defective matrix
+        A = np.array([[0, 1, 0], [1, 0, 0], [0, 0, 0]])
+        b = np.array([1, 0, 1])
+        rtol = 1e-8
+        x, info = gmres(A, b, rtol=rtol, atol=0)
+
+        # Should not return nans, nor terminate with false success
+        assert not np.isnan(x).any()
+        if info == 0:
+            assert np.linalg.norm(A @ x - b) <= rtol * np.linalg.norm(b)
+
+        # The solution should be OK outside null space of A
+        assert_allclose(A @ (A @ x), A @ b)
+
+    @pytest.mark.filterwarnings(f"ignore:{CB_TYPE_FILTER}:DeprecationWarning")
+    def test_callback_type(self):
+        # The legacy callback type changes meaning of 'maxiter'
+        np.random.seed(1)
+        A = np.random.rand(20, 20)
+        b = np.random.rand(20)
+
+        cb_count = [0]
+
+        def pr_norm_cb(r):
+            cb_count[0] += 1
+            assert isinstance(r, float)
+
+        def x_cb(x):
+            cb_count[0] += 1
+            assert isinstance(x, np.ndarray)
+
+        # 2 iterations is not enough to solve the problem
+        cb_count = [0]
+        x, info = gmres(A, b, rtol=1e-6, atol=0, callback=pr_norm_cb,
+                        maxiter=2, restart=50)
+        assert info == 2
+        assert cb_count[0] == 2
+
+        # With `callback_type` specified, no warning should be raised
+        cb_count = [0]
+        x, info = gmres(A, b, rtol=1e-6, atol=0, callback=pr_norm_cb,
+                        maxiter=2, restart=50, callback_type='legacy')
+        assert info == 2
+        assert cb_count[0] == 2
+
+        # 2 restart cycles is enough to solve the problem
+        cb_count = [0]
+        x, info = gmres(A, b, rtol=1e-6, atol=0, callback=pr_norm_cb,
+                        maxiter=2, restart=50, callback_type='pr_norm')
+        assert info == 0
+        assert cb_count[0] > 2
+
+        # 2 restart cycles is enough to solve the problem
+        cb_count = [0]
+        x, info = gmres(A, b, rtol=1e-6, atol=0, callback=x_cb, maxiter=2,
+                        restart=50, callback_type='x')
+        assert info == 0
+        assert cb_count[0] == 1
+
+    def test_callback_x_monotonic(self):
+        # Check that callback_type='x' gives monotonic norm decrease
+        rng = np.random.RandomState(1)
+        A = rng.rand(20, 20) + np.eye(20)
+        b = rng.rand(20)
+
+        prev_r = [np.inf]
+        count = [0]
+
+        def x_cb(x):
+            r = np.linalg.norm(A @ x - b)
+            assert r <= prev_r[0]
+            prev_r[0] = r
+            count[0] += 1
+
+        x, info = gmres(A, b, rtol=1e-6, atol=0, callback=x_cb, maxiter=20,
+                        restart=10, callback_type='x')
+        assert info == 20
+        assert count[0] == 20

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/tests/test_lgmres.py

@@ -0,0 +1,225 @@
+"""Tests for the linalg._isolve.lgmres module
+"""
+
+import threading
+from numpy.testing import (assert_, assert_allclose, assert_equal,
+                           suppress_warnings)
+
+import pytest
+from platform import python_implementation
+
+import numpy as np
+from numpy import zeros, array, allclose
+from scipy.linalg import norm
+from scipy.sparse import csr_array, eye_array, random_array
+
+from scipy.sparse.linalg._interface import LinearOperator
+from scipy.sparse.linalg import splu
+from scipy.sparse.linalg._isolve import lgmres, gmres
+
+
+Am = csr_array(array([[-2, 1, 0, 0, 0, 9],
+                      [1, -2, 1, 0, 5, 0],
+                      [0, 1, -2, 1, 0, 0],
+                      [0, 0, 1, -2, 1, 0],
+                      [0, 3, 0, 1, -2, 1],
+                      [1, 0, 0, 0, 1, -2]]))
+b = array([1, 2, 3, 4, 5, 6])
+count = threading.local()  # [0]
+niter = threading.local()  # [0]
+
+
+def matvec(v):
+    if not hasattr(count, 'c'):
+        count.c = [0]
+    count.c[0] += 1
+    return Am@v
+
+
+def cb(v):
+    if not hasattr(niter, 'n'):
+        niter.n = [0]
+    niter.n[0] += 1
+
+
+A = LinearOperator(matvec=matvec, shape=Am.shape, dtype=Am.dtype)
+
+
+def do_solve(**kw):
+    if not hasattr(niter, 'n'):
+        niter.n = [0]
+    if not hasattr(count, 'c'):
+        count.c = [0]
+    count.c[0] = 0
+    with suppress_warnings() as sup:
+        sup.filter(DeprecationWarning, ".*called without specifying.*")
+        x0, flag = lgmres(A, b, x0=zeros(A.shape[0]),
+                          inner_m=6, rtol=1e-14, **kw)
+    count_0 = count.c[0]
+    assert_(allclose(A@x0, b, rtol=1e-12, atol=1e-12), norm(A@x0-b))
+    return x0, count_0
+
+
+class TestLGMRES:
+    def test_preconditioner(self):
+        # Check that preconditioning works
+        pc = splu(Am.tocsc())
+        M = LinearOperator(matvec=pc.solve, shape=A.shape, dtype=A.dtype)
+
+        x0, count_0 = do_solve()
+        niter.n[0] = 0
+        x1, count_1 = do_solve(M=M, callback=cb)
+
+        assert count_1 == 3
+        assert count_1 < count_0/2
+        assert allclose(x1, x0, rtol=1e-14)
+        assert niter.n[0] < 3
+
+    def test_outer_v(self):
+        # Check that the augmentation vectors behave as expected
+
+        outer_v = []
+        x0, count_0 = do_solve(outer_k=6, outer_v=outer_v)
+        assert_(len(outer_v) > 0)
+        assert_(len(outer_v) <= 6)
+
+        x1, count_1 = do_solve(outer_k=6, outer_v=outer_v,
+                               prepend_outer_v=True)
+        assert_(count_1 == 2, count_1)
+        assert_(count_1 < count_0/2)
+        assert_(allclose(x1, x0, rtol=1e-14))
+
+        # ---
+
+        outer_v = []
+        x0, count_0 = do_solve(outer_k=6, outer_v=outer_v,
+                               store_outer_Av=False)
+        assert_(array([v[1] is None for v in outer_v]).all())
+        assert_(len(outer_v) > 0)
+        assert_(len(outer_v) <= 6)
+
+        x1, count_1 = do_solve(outer_k=6, outer_v=outer_v,
+                               prepend_outer_v=True)
+        assert_(count_1 == 3, count_1)
+        assert_(count_1 < count_0/2)
+        assert_(allclose(x1, x0, rtol=1e-14))
+
+    @pytest.mark.skipif(python_implementation() == 'PyPy',
+                        reason="Fails on PyPy CI runs. See #9507")
+    def test_arnoldi(self):
+        rng = np.random.default_rng(123)
+
+        A = eye_array(2000) + random_array((2000, 2000), density=5e-4, rng=rng)
+        b = rng.random(2000)
+
+        # The inner arnoldi should be equivalent to gmres
+        with suppress_warnings() as sup:
+            sup.filter(DeprecationWarning, ".*called without specifying.*")
+            x0, flag0 = lgmres(A, b, x0=zeros(A.shape[0]), inner_m=10, maxiter=1)
+            x1, flag1 = gmres(A, b, x0=zeros(A.shape[0]), restart=10, maxiter=1)
+
+        assert_equal(flag0, 1)
+        assert_equal(flag1, 1)
+        norm = np.linalg.norm(A.dot(x0) - b)
+        assert_(norm > 1e-4)
+        assert_allclose(x0, x1)
+
+    def test_cornercase(self):
+        rng = np.random.RandomState(1234)
+
+        # Rounding error may prevent convergence with tol=0 --- ensure
+        # that the return values in this case are correct, and no
+        # exceptions are raised
+
+        for n in [3, 5, 10, 100]:
+            A = 2*eye_array(n)
+
+            with suppress_warnings() as sup:
+                sup.filter(DeprecationWarning, ".*called without specifying.*")
+
+                b = np.ones(n)
+                x, info = lgmres(A, b, maxiter=10)
+                assert_equal(info, 0)
+                assert_allclose(A.dot(x) - b, 0, atol=1e-14)
+
+                x, info = lgmres(A, b, rtol=0, maxiter=10)
+                if info == 0:
+                    assert_allclose(A.dot(x) - b, 0, atol=1e-14)
+
+                b = rng.rand(n)
+                x, info = lgmres(A, b, maxiter=10)
+                assert_equal(info, 0)
+                assert_allclose(A.dot(x) - b, 0, atol=1e-14)
+
+                x, info = lgmres(A, b, rtol=0, maxiter=10)
+                if info == 0:
+                    assert_allclose(A.dot(x) - b, 0, atol=1e-14)
+
+    def test_nans(self):
+        A = eye_array(3, format='lil')
+        A[1, 1] = np.nan
+        b = np.ones(3)
+
+        with suppress_warnings() as sup:
+            sup.filter(DeprecationWarning, ".*called without specifying.*")
+            x, info = lgmres(A, b, rtol=0, maxiter=10)
+            assert_equal(info, 1)
+
+    def test_breakdown_with_outer_v(self):
+        A = np.array([[1, 2], [3, 4]], dtype=float)
+        b = np.array([1, 2])
+
+        x = np.linalg.solve(A, b)
+        v0 = np.array([1, 0])
+
+        # The inner iteration should converge to the correct solution,
+        # since it's in the outer vector list
+        with suppress_warnings() as sup:
+            sup.filter(DeprecationWarning, ".*called without specifying.*")
+            xp, info = lgmres(A, b, outer_v=[(v0, None), (x, None)], maxiter=1)
+
+        assert_allclose(xp, x, atol=1e-12)
+
+    def test_breakdown_underdetermined(self):
+        # Should find LSQ solution in the Krylov span in one inner
+        # iteration, despite solver breakdown from nilpotent A.
+        A = np.array([[0, 1, 1, 1],
+                      [0, 0, 1, 1],
+                      [0, 0, 0, 1],
+                      [0, 0, 0, 0]], dtype=float)
+
+        bs = [
+            np.array([1, 1, 1, 1]),
+            np.array([1, 1, 1, 0]),
+            np.array([1, 1, 0, 0]),
+            np.array([1, 0, 0, 0]),
+        ]
+
+        for b in bs:
+            with suppress_warnings() as sup:
+                sup.filter(DeprecationWarning, ".*called without specifying.*")
+                xp, info = lgmres(A, b, maxiter=1)
+            resp = np.linalg.norm(A.dot(xp) - b)
+
+            K = np.c_[b, A.dot(b), A.dot(A.dot(b)), A.dot(A.dot(A.dot(b)))]
+            y, _, _, _ = np.linalg.lstsq(A.dot(K), b, rcond=-1)
+            x = K.dot(y)
+            res = np.linalg.norm(A.dot(x) - b)
+
+            assert_allclose(resp, res, err_msg=repr(b))
+
+    def test_denormals(self):
+        # Check that no warnings are emitted if the matrix contains
+        # numbers for which 1/x has no float representation, and that
+        # the solver behaves properly.
+        A = np.array([[1, 2], [3, 4]], dtype=float)
+        A *= 100 * np.nextafter(0, 1)
+
+        b = np.array([1, 1])
+
+        with suppress_warnings() as sup:
+            sup.filter(DeprecationWarning, ".*called without specifying.*")
+            xp, info = lgmres(A, b)
+
+        if info == 0:
+            assert_allclose(A.dot(xp), b)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/tests/test_lsmr.py

@@ -0,0 +1,185 @@
+"""
+Copyright (C) 2010 David Fong and Michael Saunders
+Distributed under the same license as SciPy
+
+Testing Code for LSMR.
+
+03 Jun 2010: First version release with lsmr.py
+
+David Chin-lung Fong            clfong@stanford.edu
+Institute for Computational and Mathematical Engineering
+Stanford University
+
+Michael Saunders                saunders@stanford.edu
+Systems Optimization Laboratory
+Dept of MS&E, Stanford University.
+
+"""
+
+from numpy import array, arange, eye, zeros, ones, transpose, hstack
+from numpy.linalg import norm
+from numpy.testing import assert_allclose
+import pytest
+from scipy.sparse import coo_array
+from scipy.sparse.linalg._interface import aslinearoperator
+from scipy.sparse.linalg import lsmr
+from .test_lsqr import G, b
+
+
+class TestLSMR:
+    def setup_method(self):
+        self.n = 10
+        self.m = 10
+
+    def assertCompatibleSystem(self, A, xtrue):
+        Afun = aslinearoperator(A)
+        b = Afun.matvec(xtrue)
+        x = lsmr(A, b)[0]
+        assert norm(x - xtrue) == pytest.approx(0, abs=1e-5)
+
+    def testIdentityACase1(self):
+        A = eye(self.n)
+        xtrue = zeros((self.n, 1))
+        self.assertCompatibleSystem(A, xtrue)
+
+    def testIdentityACase2(self):
+        A = eye(self.n)
+        xtrue = ones((self.n,1))
+        self.assertCompatibleSystem(A, xtrue)
+
+    def testIdentityACase3(self):
+        A = eye(self.n)
+        xtrue = transpose(arange(self.n,0,-1))
+        self.assertCompatibleSystem(A, xtrue)
+
+    def testBidiagonalA(self):
+        A = lowerBidiagonalMatrix(20,self.n)
+        xtrue = transpose(arange(self.n,0,-1))
+        self.assertCompatibleSystem(A,xtrue)
+
+    def testScalarB(self):
+        A = array([[1.0, 2.0]])
+        b = 3.0
+        x = lsmr(A, b)[0]
+        assert norm(A.dot(x) - b) == pytest.approx(0)
+
+    def testComplexX(self):
+        A = eye(self.n)
+        xtrue = transpose(arange(self.n, 0, -1) * (1 + 1j))
+        self.assertCompatibleSystem(A, xtrue)
+
+    def testComplexX0(self):
+        A = 4 * eye(self.n) + ones((self.n, self.n))
+        xtrue = transpose(arange(self.n, 0, -1))
+        b = aslinearoperator(A).matvec(xtrue)
+        x0 = zeros(self.n, dtype=complex)
+        x = lsmr(A, b, x0=x0)[0]
+        assert norm(x - xtrue) == pytest.approx(0, abs=1e-5)
+
+    def testComplexA(self):
+        A = 4 * eye(self.n) + 1j * ones((self.n, self.n))
+        xtrue = transpose(arange(self.n, 0, -1).astype(complex))
+        self.assertCompatibleSystem(A, xtrue)
+
+    def testComplexB(self):
+        A = 4 * eye(self.n) + ones((self.n, self.n))
+        xtrue = transpose(arange(self.n, 0, -1) * (1 + 1j))
+        b = aslinearoperator(A).matvec(xtrue)
+        x = lsmr(A, b)[0]
+        assert norm(x - xtrue) == pytest.approx(0, abs=1e-5)
+
+    def testColumnB(self):
+        A = eye(self.n)
+        b = ones((self.n, 1))
+        x = lsmr(A, b)[0]
+        assert norm(A.dot(x) - b.ravel()) == pytest.approx(0)
+
+    def testInitialization(self):
+        # Test that the default setting is not modified
+        x_ref, _, itn_ref, normr_ref, *_ = lsmr(G, b)
+        assert_allclose(norm(b - G@x_ref), normr_ref, atol=1e-6)
+
+        # Test passing zeros yields similar result
+        x0 = zeros(b.shape)
+        x = lsmr(G, b, x0=x0)[0]
+        assert_allclose(x, x_ref)
+
+        # Test warm-start with single iteration
+        x0 = lsmr(G, b, maxiter=1)[0]
+
+        x, _, itn, normr, *_ = lsmr(G, b, x0=x0)
+        assert_allclose(norm(b - G@x), normr, atol=1e-6)
+
+        # NOTE(gh-12139): This doesn't always converge to the same value as
+        # ref because error estimates will be slightly different when calculated
+        # from zeros vs x0 as a result only compare norm and itn (not x).
+
+        # x generally converges 1 iteration faster because it started at x0.
+        # itn == itn_ref means that lsmr(x0) took an extra iteration see above.
+        # -1 is technically possible but is rare (1 in 100000) so it's more
+        # likely to be an error elsewhere.
+        assert itn - itn_ref in (0, 1)
+
+        # If an extra iteration is performed normr may be 0, while normr_ref
+        # may be much larger.
+        assert normr < normr_ref * (1 + 1e-6)
+
+
+class TestLSMRReturns:
+    def setup_method(self):
+        self.n = 10
+        self.A = lowerBidiagonalMatrix(20, self.n)
+        self.xtrue = transpose(arange(self.n, 0, -1))
+        self.Afun = aslinearoperator(self.A)
+        self.b = self.Afun.matvec(self.xtrue)
+        self.x0 = ones(self.n)
+        self.x00 = self.x0.copy()
+        self.returnValues = lsmr(self.A, self.b)
+        self.returnValuesX0 = lsmr(self.A, self.b, x0=self.x0)
+
+    def test_unchanged_x0(self):
+        x, istop, itn, normr, normar, normA, condA, normx = self.returnValuesX0
+        assert_allclose(self.x00, self.x0)
+
+    def testNormr(self):
+        x, istop, itn, normr, normar, normA, condA, normx = self.returnValues
+        assert norm(self.b - self.Afun.matvec(x)) == pytest.approx(normr)
+
+    def testNormar(self):
+        x, istop, itn, normr, normar, normA, condA, normx = self.returnValues
+        assert (norm(self.Afun.rmatvec(self.b - self.Afun.matvec(x)))
+                == pytest.approx(normar))
+
+    def testNormx(self):
+        x, istop, itn, normr, normar, normA, condA, normx = self.returnValues
+        assert norm(x) == pytest.approx(normx)
+
+
+def lowerBidiagonalMatrix(m, n):
+    # This is a simple example for testing LSMR.
+    # It uses the leading m*n submatrix from
+    # A = [ 1
+    #       1 2
+    #         2 3
+    #           3 4
+    #             ...
+    #               n ]
+    # suitably padded by zeros.
+    #
+    # 04 Jun 2010: First version for distribution with lsmr.py
+    if m <= n:
+        row = hstack((arange(m, dtype=int),
+                      arange(1, m, dtype=int)))
+        col = hstack((arange(m, dtype=int),
+                      arange(m-1, dtype=int)))
+        data = hstack((arange(1, m+1, dtype=float),
+                       arange(1,m, dtype=float)))
+        return coo_array((data, (row, col)), shape=(m,n))
+    else:
+        row = hstack((arange(n, dtype=int),
+                      arange(1, n+1, dtype=int)))
+        col = hstack((arange(n, dtype=int),
+                      arange(n, dtype=int)))
+        data = hstack((arange(1, n+1, dtype=float),
+                       arange(1,n+1, dtype=float)))
+        return coo_array((data,(row, col)), shape=(m,n))

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/tests/test_lsqr.py

@@ -0,0 +1,120 @@
+import numpy as np
+from numpy.testing import assert_allclose, assert_array_equal, assert_equal
+import pytest
+import scipy.sparse
+import scipy.sparse.linalg
+from scipy.sparse.linalg import lsqr
+
+# Set up a test problem
+n = 35
+G = np.eye(n)
+normal = np.random.normal
+norm = np.linalg.norm
+
+for jj in range(5):
+    gg = normal(size=n)
+    hh = gg * gg.T
+    G += (hh + hh.T) * 0.5
+    G += normal(size=n) * normal(size=n)
+
+b = normal(size=n)
+
+# tolerance for atol/btol keywords of lsqr()
+tol = 2e-10
+# tolerances for testing the results of the lsqr() call with assert_allclose
+# These tolerances are a bit fragile - see discussion in gh-15301.
+atol_test = 4e-10
+rtol_test = 2e-8
+show = False
+maxit = None
+
+
+def test_lsqr_basic():
+    b_copy = b.copy()
+    xo, *_ = lsqr(G, b, show=show, atol=tol, btol=tol, iter_lim=maxit)
+    assert_array_equal(b_copy, b)
+
+    svx = np.linalg.solve(G, b)
+    assert_allclose(xo, svx, atol=atol_test, rtol=rtol_test)
+
+    # Now the same but with damp > 0.
+    # This is equivalent to solving the extended system:
+    # ( G      ) @ x = ( b )
+    # ( damp*I )       ( 0 )
+    damp = 1.5
+    xo, *_ = lsqr(
+        G, b, damp=damp, show=show, atol=tol, btol=tol, iter_lim=maxit)
+
+    Gext = np.r_[G, damp * np.eye(G.shape[1])]
+    bext = np.r_[b, np.zeros(G.shape[1])]
+    svx, *_ = np.linalg.lstsq(Gext, bext, rcond=None)
+    assert_allclose(xo, svx, atol=atol_test, rtol=rtol_test)
+
+
+def test_gh_2466():
+    row = np.array([0, 0])
+    col = np.array([0, 1])
+    val = np.array([1, -1])
+    A = scipy.sparse.coo_array((val, (row, col)), shape=(1, 2))
+    b = np.asarray([4])
+    lsqr(A, b)
+
+
+def test_well_conditioned_problems():
+    # Test that sparse the lsqr solver returns the right solution
+    # on various problems with different random seeds.
+    # This is a non-regression test for a potential ZeroDivisionError
+    # raised when computing the `test2` & `test3` convergence conditions.
+    n = 10
+    A_sparse = scipy.sparse.eye_array(n, n)
+    A_dense = A_sparse.toarray()
+
+    with np.errstate(invalid='raise'):
+        for seed in range(30):
+            rng = np.random.RandomState(seed + 10)
+            beta = rng.rand(n)
+            beta[beta == 0] = 0.00001  # ensure that all the betas are not null
+            b = A_sparse @ beta[:, np.newaxis]
+            output = lsqr(A_sparse, b, show=show)
+
+            # Check that the termination condition corresponds to an approximate
+            # solution to Ax = b
+            assert_equal(output[1], 1)
+            solution = output[0]
+
+            # Check that we recover the ground truth solution
+            assert_allclose(solution, beta)
+
+            # Sanity check: compare to the dense array solver
+            reference_solution = np.linalg.solve(A_dense, b).ravel()
+            assert_allclose(solution, reference_solution)
+
+
+def test_b_shapes():
+    # Test b being a scalar.
+    A = np.array([[1.0, 2.0]])
+    b = 3.0
+    x = lsqr(A, b)[0]
+    assert norm(A.dot(x) - b) == pytest.approx(0)
+
+    # Test b being a column vector.
+    A = np.eye(10)
+    b = np.ones((10, 1))
+    x = lsqr(A, b)[0]
+    assert norm(A.dot(x) - b.ravel()) == pytest.approx(0)
+
+
+def test_initialization():
+    # Test the default setting is the same as zeros
+    b_copy = b.copy()
+    x_ref = lsqr(G, b, show=show, atol=tol, btol=tol, iter_lim=maxit)
+    x0 = np.zeros(x_ref[0].shape)
+    x = lsqr(G, b, show=show, atol=tol, btol=tol, iter_lim=maxit, x0=x0)
+    assert_array_equal(b_copy, b)
+    assert_allclose(x_ref[0], x[0])
+
+    # Test warm-start with single iteration
+    x0 = lsqr(G, b, show=show, atol=tol, btol=tol, iter_lim=1)[0]
+    x = lsqr(G, b, show=show, atol=tol, btol=tol, iter_lim=maxit, x0=x0)
+    assert_allclose(x_ref[0], x[0])
+    assert_array_equal(b_copy, b)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/tests/test_minres.py

@@ -0,0 +1,97 @@
+import numpy as np
+from numpy.linalg import norm
+from numpy.testing import assert_equal, assert_allclose, assert_
+from scipy.sparse.linalg._isolve import minres
+
+from pytest import raises as assert_raises
+
+
+def get_sample_problem():
+    # A random 10 x 10 symmetric matrix
+    rng = np.random.RandomState(1234)
+    matrix = rng.rand(10, 10)
+    matrix = matrix + matrix.T
+    # A random vector of length 10
+    vector = rng.rand(10)
+    return matrix, vector
+
+
+def test_singular():
+    A, b = get_sample_problem()
+    A[0, ] = 0
+    b[0] = 0
+    xp, info = minres(A, b)
+    assert_equal(info, 0)
+    assert norm(A @ xp - b) <= 1e-5 * norm(b)
+
+
+def test_x0_is_used_by():
+    A, b = get_sample_problem()
+    # Random x0 to feed minres
+    rng = np.random.RandomState(12345)
+    x0 = rng.rand(10)
+    trace = []
+
+    def trace_iterates(xk):
+        trace.append(xk)
+    minres(A, b, x0=x0, callback=trace_iterates)
+    trace_with_x0 = trace
+
+    trace = []
+    minres(A, b, callback=trace_iterates)
+    assert_(not np.array_equal(trace_with_x0[0], trace[0]))
+
+
+def test_shift():
+    A, b = get_sample_problem()
+    shift = 0.5
+    shifted_A = A - shift * np.eye(10)
+    x1, info1 = minres(A, b, shift=shift)
+    x2, info2 = minres(shifted_A, b)
+    assert_equal(info1, 0)
+    assert_allclose(x1, x2, rtol=1e-5)
+
+
+def test_asymmetric_fail():
+    """Asymmetric matrix should raise `ValueError` when check=True"""
+    A, b = get_sample_problem()
+    A[1, 2] = 1
+    A[2, 1] = 2
+    with assert_raises(ValueError):
+        xp, info = minres(A, b, check=True)
+
+
+def test_minres_non_default_x0():
+    rng = np.random.RandomState(1234)
+    rtol = 1e-6
+    a = rng.randn(5, 5)
+    a = np.dot(a, a.T)
+    b = rng.randn(5)
+    c = rng.randn(5)
+    x = minres(a, b, x0=c, rtol=rtol)[0]
+    assert norm(a @ x - b) <= rtol * norm(b)
+
+
+def test_minres_precond_non_default_x0():
+    rng = np.random.RandomState(12345)
+    rtol = 1e-6
+    a = rng.randn(5, 5)
+    a = np.dot(a, a.T)
+    b = rng.randn(5)
+    c = rng.randn(5)
+    m = rng.randn(5, 5)
+    m = np.dot(m, m.T)
+    x = minres(a, b, M=m, x0=c, rtol=rtol)[0]
+    assert norm(a @ x - b) <= rtol * norm(b)
+
+
+def test_minres_precond_exact_x0():
+    rng = np.random.RandomState(1234)
+    rtol = 1e-6
+    a = np.eye(10)
+    b = np.ones(10)
+    c = np.ones(10)
+    m = rng.randn(10, 10)
+    m = np.dot(m, m.T)
+    x = minres(a, b, M=m, x0=c, rtol=rtol)[0]
+    assert norm(a @ x - b) <= rtol * norm(b)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/tests/test_utils.py

@@ -0,0 +1,9 @@
+import numpy as np
+from pytest import raises as assert_raises
+
+import scipy.sparse.linalg._isolve.utils as utils
+
+
+def test_make_system_bad_shape():
+    assert_raises(ValueError,
+                  utils.make_system, np.zeros((5,3)), None, np.zeros(4), np.zeros(4))

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/tfqmr.py

@@ -0,0 +1,179 @@
+import numpy as np
+from .iterative import _get_atol_rtol
+from .utils import make_system
+
+
+__all__ = ['tfqmr']
+
+
+def tfqmr(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M=None,
+          callback=None, show=False):
+    """
+    Use Transpose-Free Quasi-Minimal Residual iteration to solve ``Ax = b``.
+
+    Parameters
+    ----------
+    A : {sparse array, ndarray, LinearOperator}
+        The real or complex N-by-N matrix of the linear system.
+        Alternatively, `A` can be a linear operator which can
+        produce ``Ax`` using, e.g.,
+        `scipy.sparse.linalg.LinearOperator`.
+    b : {ndarray}
+        Right hand side of the linear system. Has shape (N,) or (N,1).
+    x0 : {ndarray}
+        Starting guess for the solution.
+    rtol, atol : float, optional
+        Parameters for the convergence test. For convergence,
+        ``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
+        The default is ``rtol=1e-5``, the default for ``atol`` is ``0.0``.
+    maxiter : int, optional
+        Maximum number of iterations.  Iteration will stop after maxiter
+        steps even if the specified tolerance has not been achieved.
+        Default is ``min(10000, ndofs * 10)``, where ``ndofs = A.shape[0]``.
+    M : {sparse array, ndarray, LinearOperator}
+        Inverse of the preconditioner of A.  M should approximate the
+        inverse of A and be easy to solve for (see Notes).  Effective
+        preconditioning dramatically improves the rate of convergence,
+        which implies that fewer iterations are needed to reach a given
+        error tolerance.  By default, no preconditioner is used.
+    callback : function, optional
+        User-supplied function to call after each iteration.  It is called
+        as ``callback(xk)``, where ``xk`` is the current solution vector.
+    show : bool, optional
+        Specify ``show = True`` to show the convergence, ``show = False`` is
+        to close the output of the convergence.
+        Default is `False`.
+
+    Returns
+    -------
+    x : ndarray
+        The converged solution.
+    info : int
+        Provides convergence information:
+
+            - 0  : successful exit
+            - >0 : convergence to tolerance not achieved, number of iterations
+            - <0 : illegal input or breakdown
+
+    Notes
+    -----
+    The Transpose-Free QMR algorithm is derived from the CGS algorithm.
+    However, unlike CGS, the convergence curves for the TFQMR method is
+    smoothed by computing a quasi minimization of the residual norm. The
+    implementation supports left preconditioner, and the "residual norm"
+    to compute in convergence criterion is actually an upper bound on the
+    actual residual norm ``||b - Axk||``.
+
+    References
+    ----------
+    .. [1] R. W. Freund, A Transpose-Free Quasi-Minimal Residual Algorithm for
+           Non-Hermitian Linear Systems, SIAM J. Sci. Comput., 14(2), 470-482,
+           1993.
+    .. [2] Y. Saad, Iterative Methods for Sparse Linear Systems, 2nd edition,
+           SIAM, Philadelphia, 2003.
+    .. [3] C. T. Kelley, Iterative Methods for Linear and Nonlinear Equations,
+           number 16 in Frontiers in Applied Mathematics, SIAM, Philadelphia,
+           1995.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import tfqmr
+    >>> A = csc_array([[3, 2, 0], [1, -1, 0], [0, 5, 1]], dtype=float)
+    >>> b = np.array([2, 4, -1], dtype=float)
+    >>> x, exitCode = tfqmr(A, b, atol=0.0)
+    >>> print(exitCode)            # 0 indicates successful convergence
+    0
+    >>> np.allclose(A.dot(x), b)
+    True
+    """
+
+    # Check data type
+    dtype = A.dtype
+    if np.issubdtype(dtype, np.int64):
+        dtype = float
+        A = A.astype(dtype)
+    if np.issubdtype(b.dtype, np.int64):
+        b = b.astype(dtype)
+
+    A, M, x, b, postprocess = make_system(A, M, x0, b)
+
+    # Check if the R.H.S is a zero vector
+    if np.linalg.norm(b) == 0.:
+        x = b.copy()
+        return (postprocess(x), 0)
+
+    ndofs = A.shape[0]
+    if maxiter is None:
+        maxiter = min(10000, ndofs * 10)
+
+    if x0 is None:
+        r = b.copy()
+    else:
+        r = b - A.matvec(x)
+    u = r
+    w = r.copy()
+    # Take rstar as b - Ax0, that is rstar := r = b - Ax0 mathematically
+    rstar = r
+    v = M.matvec(A.matvec(r))
+    uhat = v
+    d = theta = eta = 0.
+    # at this point we know rstar == r, so rho is always real
+    rho = np.inner(rstar.conjugate(), r).real
+    rhoLast = rho
+    r0norm = np.sqrt(rho)
+    tau = r0norm
+    if r0norm == 0:
+        return (postprocess(x), 0)
+
+    # we call this to get the right atol and raise errors as necessary
+    atol, _ = _get_atol_rtol('tfqmr', r0norm, atol, rtol)
+
+    for iter in range(maxiter):
+        even = iter % 2 == 0
+        if (even):
+            vtrstar = np.inner(rstar.conjugate(), v)
+            # Check breakdown
+            if vtrstar == 0.:
+                return (postprocess(x), -1)
+            alpha = rho / vtrstar
+            uNext = u - alpha * v  # [1]-(5.6)
+        w -= alpha * uhat  # [1]-(5.8)
+        d = u + (theta**2 / alpha) * eta * d  # [1]-(5.5)
+        # [1]-(5.2)
+        theta = np.linalg.norm(w) / tau
+        c = np.sqrt(1. / (1 + theta**2))
+        tau *= theta * c
+        # Calculate step and direction [1]-(5.4)
+        eta = (c**2) * alpha
+        z = M.matvec(d)
+        x += eta * z
+
+        if callback is not None:
+            callback(x)
+
+        # Convergence criterion
+        if tau * np.sqrt(iter+1) < atol:
+            if (show):
+                print("TFQMR: Linear solve converged due to reach TOL "
+                      f"iterations {iter+1}")
+            return (postprocess(x), 0)
+
+        if (not even):
+            # [1]-(5.7)
+            rho = np.inner(rstar.conjugate(), w)
+            beta = rho / rhoLast
+            u = w + beta * u
+            v = beta * uhat + (beta**2) * v
+            uhat = M.matvec(A.matvec(u))
+            v += uhat
+        else:
+            uhat = M.matvec(A.matvec(uNext))
+            u = uNext
+            rhoLast = rho
+
+    if (show):
+        print("TFQMR: Linear solve not converged due to reach MAXIT "
+              f"iterations {iter+1}")
+    return (postprocess(x), maxiter)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_isolve/utils.py

@@ -0,0 +1,127 @@
+__docformat__ = "restructuredtext en"
+
+__all__ = []
+
+
+from numpy import asanyarray, asarray, array, zeros
+
+from scipy.sparse.linalg._interface import aslinearoperator, LinearOperator, \
+     IdentityOperator
+
+_coerce_rules = {('f','f'):'f', ('f','d'):'d', ('f','F'):'F',
+                 ('f','D'):'D', ('d','f'):'d', ('d','d'):'d',
+                 ('d','F'):'D', ('d','D'):'D', ('F','f'):'F',
+                 ('F','d'):'D', ('F','F'):'F', ('F','D'):'D',
+                 ('D','f'):'D', ('D','d'):'D', ('D','F'):'D',
+                 ('D','D'):'D'}
+
+
+def coerce(x,y):
+    if x not in 'fdFD':
+        x = 'd'
+    if y not in 'fdFD':
+        y = 'd'
+    return _coerce_rules[x,y]
+
+
+def id(x):
+    return x
+
+
+def make_system(A, M, x0, b):
+    """Make a linear system Ax=b
+
+    Parameters
+    ----------
+    A : LinearOperator
+        sparse or dense matrix (or any valid input to aslinearoperator)
+    M : {LinearOperator, Nones}
+        preconditioner
+        sparse or dense matrix (or any valid input to aslinearoperator)
+    x0 : {array_like, str, None}
+        initial guess to iterative method.
+        ``x0 = 'Mb'`` means using the nonzero initial guess ``M @ b``.
+        Default is `None`, which means using the zero initial guess.
+    b : array_like
+        right hand side
+
+    Returns
+    -------
+    (A, M, x, b, postprocess)
+        A : LinearOperator
+            matrix of the linear system
+        M : LinearOperator
+            preconditioner
+        x : rank 1 ndarray
+            initial guess
+        b : rank 1 ndarray
+            right hand side
+        postprocess : function
+            converts the solution vector to the appropriate
+            type and dimensions (e.g. (N,1) matrix)
+
+    """
+    A_ = A
+    A = aslinearoperator(A)
+
+    if A.shape[0] != A.shape[1]:
+        raise ValueError(f'expected square matrix, but got shape={(A.shape,)}')
+
+    N = A.shape[0]
+
+    b = asanyarray(b)
+
+    if not (b.shape == (N,1) or b.shape == (N,)):
+        raise ValueError(f'shapes of A {A.shape} and b {b.shape} are '
+                         'incompatible')
+
+    if b.dtype.char not in 'fdFD':
+        b = b.astype('d')  # upcast non-FP types to double
+
+    def postprocess(x):
+        return x
+
+    if hasattr(A,'dtype'):
+        xtype = A.dtype.char
+    else:
+        xtype = A.matvec(b).dtype.char
+    xtype = coerce(xtype, b.dtype.char)
+
+    b = asarray(b,dtype=xtype)  # make b the same type as x
+    b = b.ravel()
+
+    # process preconditioner
+    if M is None:
+        if hasattr(A_,'psolve'):
+            psolve = A_.psolve
+        else:
+            psolve = id
+        if hasattr(A_,'rpsolve'):
+            rpsolve = A_.rpsolve
+        else:
+            rpsolve = id
+        if psolve is id and rpsolve is id:
+            M = IdentityOperator(shape=A.shape, dtype=A.dtype)
+        else:
+            M = LinearOperator(A.shape, matvec=psolve, rmatvec=rpsolve,
+                               dtype=A.dtype)
+    else:
+        M = aslinearoperator(M)
+        if A.shape != M.shape:
+            raise ValueError('matrix and preconditioner have different shapes')
+
+    # set initial guess
+    if x0 is None:
+        x = zeros(N, dtype=xtype)
+    elif isinstance(x0, str):
+        if x0 == 'Mb':  # use nonzero initial guess ``M @ b``
+            bCopy = b.copy()
+            x = M.matvec(bCopy)
+    else:
+        x = array(x0, dtype=xtype)
+        if not (x.shape == (N, 1) or x.shape == (N,)):
+            raise ValueError(f'shapes of A {A.shape} and '
+                             f'x0 {x.shape} are incompatible')
+        x = x.ravel()
+
+    return A, M, x, b, postprocess

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_matfuncs.py

@@ -0,0 +1,940 @@
+"""
+Sparse matrix functions
+"""
+
+#
+# Authors: Travis Oliphant, March 2002
+#          Anthony Scopatz, August 2012 (Sparse Updates)
+#          Jake Vanderplas, August 2012 (Sparse Updates)
+#
+
+__all__ = ['expm', 'inv', 'matrix_power']
+
+import numpy as np
+from scipy.linalg._basic import solve, solve_triangular
+
+from scipy.sparse._base import issparse
+from scipy.sparse.linalg import spsolve
+from scipy.sparse._sputils import is_pydata_spmatrix, isintlike
+
+import scipy.sparse
+import scipy.sparse.linalg
+from scipy.sparse.linalg._interface import LinearOperator
+from scipy.sparse._construct import eye_array
+
+from ._expm_multiply import _ident_like, _exact_1_norm as _onenorm
+
+
+UPPER_TRIANGULAR = 'upper_triangular'
+
+
+def inv(A):
+    """
+    Compute the inverse of a sparse arrays
+
+    Parameters
+    ----------
+    A : (M, M) sparse arrays
+        square matrix to be inverted
+
+    Returns
+    -------
+    Ainv : (M, M) sparse arrays
+        inverse of `A`
+
+    Notes
+    -----
+    This computes the sparse inverse of `A`. If the inverse of `A` is expected
+    to be non-sparse, it will likely be faster to convert `A` to dense and use
+    `scipy.linalg.inv`.
+
+    Examples
+    --------
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import inv
+    >>> A = csc_array([[1., 0.], [1., 2.]])
+    >>> Ainv = inv(A)
+    >>> Ainv
+    <Compressed Sparse Column sparse array of dtype 'float64'
+        with 3 stored elements and shape (2, 2)>
+    >>> A.dot(Ainv)
+    <Compressed Sparse Column sparse array of dtype 'float64'
+        with 2 stored elements and shape (2, 2)>
+    >>> A.dot(Ainv).toarray()
+    array([[ 1.,  0.],
+           [ 0.,  1.]])
+
+    .. versionadded:: 0.12.0
+
+    """
+    # Check input
+    if not (issparse(A) or is_pydata_spmatrix(A)):
+        raise TypeError('Input must be a sparse arrays')
+
+    # Use sparse direct solver to solve "AX = I" accurately
+    I = _ident_like(A)
+    Ainv = spsolve(A, I)
+    return Ainv
+
+
+def _onenorm_matrix_power_nnm(A, p):
+    """
+    Compute the 1-norm of a non-negative integer power of a non-negative matrix.
+
+    Parameters
+    ----------
+    A : a square ndarray or matrix or sparse arrays
+        Input matrix with non-negative entries.
+    p : non-negative integer
+        The power to which the matrix is to be raised.
+
+    Returns
+    -------
+    out : float
+        The 1-norm of the matrix power p of A.
+
+    """
+    # Check input
+    if int(p) != p or p < 0:
+        raise ValueError('expected non-negative integer p')
+    p = int(p)
+    if len(A.shape) != 2 or A.shape[0] != A.shape[1]:
+        raise ValueError('expected A to be like a square matrix')
+
+    # Explicitly make a column vector so that this works when A is a
+    # numpy matrix (in addition to ndarray and sparse arrays).
+    v = np.ones((A.shape[0], 1), dtype=float)
+    M = A.T
+    for i in range(p):
+        v = M.dot(v)
+    return np.max(v)
+
+
+def _is_upper_triangular(A):
+    # This function could possibly be of wider interest.
+    if issparse(A):
+        lower_part = scipy.sparse.tril(A, -1)
+        # Check structural upper triangularity,
+        # then coincidental upper triangularity if needed.
+        return lower_part.nnz == 0 or lower_part.count_nonzero() == 0
+    elif is_pydata_spmatrix(A):
+        import sparse
+        lower_part = sparse.tril(A, -1)
+        return lower_part.nnz == 0
+    else:
+        return not np.tril(A, -1).any()
+
+
+def _smart_matrix_product(A, B, alpha=None, structure=None):
+    """
+    A matrix product that knows about sparse and structured matrices.
+
+    Parameters
+    ----------
+    A : 2d ndarray
+        First matrix.
+    B : 2d ndarray
+        Second matrix.
+    alpha : float
+        The matrix product will be scaled by this constant.
+    structure : str, optional
+        A string describing the structure of both matrices `A` and `B`.
+        Only `upper_triangular` is currently supported.
+
+    Returns
+    -------
+    M : 2d ndarray
+        Matrix product of A and B.
+
+    """
+    if len(A.shape) != 2:
+        raise ValueError('expected A to be a rectangular matrix')
+    if len(B.shape) != 2:
+        raise ValueError('expected B to be a rectangular matrix')
+    f = None
+    if structure == UPPER_TRIANGULAR:
+        if (not issparse(A) and not issparse(B)
+                and not is_pydata_spmatrix(A) and not is_pydata_spmatrix(B)):
+            f, = scipy.linalg.get_blas_funcs(('trmm',), (A, B))
+    if f is not None:
+        if alpha is None:
+            alpha = 1.
+        out = f(alpha, A, B)
+    else:
+        if alpha is None:
+            out = A.dot(B)
+        else:
+            out = alpha * A.dot(B)
+    return out
+
+
+class MatrixPowerOperator(LinearOperator):
+
+    def __init__(self, A, p, structure=None):
+        if A.ndim != 2 or A.shape[0] != A.shape[1]:
+            raise ValueError('expected A to be like a square matrix')
+        if p < 0:
+            raise ValueError('expected p to be a non-negative integer')
+        self._A = A
+        self._p = p
+        self._structure = structure
+        self.dtype = A.dtype
+        self.ndim = A.ndim
+        self.shape = A.shape
+
+    def _matvec(self, x):
+        for i in range(self._p):
+            x = self._A.dot(x)
+        return x
+
+    def _rmatvec(self, x):
+        A_T = self._A.T
+        x = x.ravel()
+        for i in range(self._p):
+            x = A_T.dot(x)
+        return x
+
+    def _matmat(self, X):
+        for i in range(self._p):
+            X = _smart_matrix_product(self._A, X, structure=self._structure)
+        return X
+
+    @property
+    def T(self):
+        return MatrixPowerOperator(self._A.T, self._p)
+
+
+class ProductOperator(LinearOperator):
+    """
+    For now, this is limited to products of multiple square matrices.
+    """
+
+    def __init__(self, *args, **kwargs):
+        self._structure = kwargs.get('structure', None)
+        for A in args:
+            if len(A.shape) != 2 or A.shape[0] != A.shape[1]:
+                raise ValueError(
+                        'For now, the ProductOperator implementation is '
+                        'limited to the product of multiple square matrices.')
+        if args:
+            n = args[0].shape[0]
+            for A in args:
+                for d in A.shape:
+                    if d != n:
+                        raise ValueError(
+                                'The square matrices of the ProductOperator '
+                                'must all have the same shape.')
+            self.shape = (n, n)
+            self.ndim = len(self.shape)
+        self.dtype = np.result_type(*[x.dtype for x in args])
+        self._operator_sequence = args
+
+    def _matvec(self, x):
+        for A in reversed(self._operator_sequence):
+            x = A.dot(x)
+        return x
+
+    def _rmatvec(self, x):
+        x = x.ravel()
+        for A in self._operator_sequence:
+            x = A.T.dot(x)
+        return x
+
+    def _matmat(self, X):
+        for A in reversed(self._operator_sequence):
+            X = _smart_matrix_product(A, X, structure=self._structure)
+        return X
+
+    @property
+    def T(self):
+        T_args = [A.T for A in reversed(self._operator_sequence)]
+        return ProductOperator(*T_args)
+
+
+def _onenormest_matrix_power(A, p,
+        t=2, itmax=5, compute_v=False, compute_w=False, structure=None):
+    """
+    Efficiently estimate the 1-norm of A^p.
+
+    Parameters
+    ----------
+    A : ndarray
+        Matrix whose 1-norm of a power is to be computed.
+    p : int
+        Non-negative integer power.
+    t : int, optional
+        A positive parameter controlling the tradeoff between
+        accuracy versus time and memory usage.
+        Larger values take longer and use more memory
+        but give more accurate output.
+    itmax : int, optional
+        Use at most this many iterations.
+    compute_v : bool, optional
+        Request a norm-maximizing linear operator input vector if True.
+    compute_w : bool, optional
+        Request a norm-maximizing linear operator output vector if True.
+
+    Returns
+    -------
+    est : float
+        An underestimate of the 1-norm of the sparse arrays.
+    v : ndarray, optional
+        The vector such that ||Av||_1 == est*||v||_1.
+        It can be thought of as an input to the linear operator
+        that gives an output with particularly large norm.
+    w : ndarray, optional
+        The vector Av which has relatively large 1-norm.
+        It can be thought of as an output of the linear operator
+        that is relatively large in norm compared to the input.
+
+    """
+    return scipy.sparse.linalg.onenormest(
+            MatrixPowerOperator(A, p, structure=structure))
+
+
+def _onenormest_product(operator_seq,
+        t=2, itmax=5, compute_v=False, compute_w=False, structure=None):
+    """
+    Efficiently estimate the 1-norm of the matrix product of the args.
+
+    Parameters
+    ----------
+    operator_seq : linear operator sequence
+        Matrices whose 1-norm of product is to be computed.
+    t : int, optional
+        A positive parameter controlling the tradeoff between
+        accuracy versus time and memory usage.
+        Larger values take longer and use more memory
+        but give more accurate output.
+    itmax : int, optional
+        Use at most this many iterations.
+    compute_v : bool, optional
+        Request a norm-maximizing linear operator input vector if True.
+    compute_w : bool, optional
+        Request a norm-maximizing linear operator output vector if True.
+    structure : str, optional
+        A string describing the structure of all operators.
+        Only `upper_triangular` is currently supported.
+
+    Returns
+    -------
+    est : float
+        An underestimate of the 1-norm of the sparse arrays.
+    v : ndarray, optional
+        The vector such that ||Av||_1 == est*||v||_1.
+        It can be thought of as an input to the linear operator
+        that gives an output with particularly large norm.
+    w : ndarray, optional
+        The vector Av which has relatively large 1-norm.
+        It can be thought of as an output of the linear operator
+        that is relatively large in norm compared to the input.
+
+    """
+    return scipy.sparse.linalg.onenormest(
+            ProductOperator(*operator_seq, structure=structure))
+
+
+class _ExpmPadeHelper:
+    """
+    Help lazily evaluate a matrix exponential.
+
+    The idea is to not do more work than we need for high expm precision,
+    so we lazily compute matrix powers and store or precompute
+    other properties of the matrix.
+
+    """
+
+    def __init__(self, A, structure=None, use_exact_onenorm=False):
+        """
+        Initialize the object.
+
+        Parameters
+        ----------
+        A : a dense or sparse square numpy matrix or ndarray
+            The matrix to be exponentiated.
+        structure : str, optional
+            A string describing the structure of matrix `A`.
+            Only `upper_triangular` is currently supported.
+        use_exact_onenorm : bool, optional
+            If True then only the exact one-norm of matrix powers and products
+            will be used. Otherwise, the one-norm of powers and products
+            may initially be estimated.
+        """
+        self.A = A
+        self._A2 = None
+        self._A4 = None
+        self._A6 = None
+        self._A8 = None
+        self._A10 = None
+        self._d4_exact = None
+        self._d6_exact = None
+        self._d8_exact = None
+        self._d10_exact = None
+        self._d4_approx = None
+        self._d6_approx = None
+        self._d8_approx = None
+        self._d10_approx = None
+        self.ident = _ident_like(A)
+        self.structure = structure
+        self.use_exact_onenorm = use_exact_onenorm
+
+    @property
+    def A2(self):
+        if self._A2 is None:
+            self._A2 = _smart_matrix_product(
+                    self.A, self.A, structure=self.structure)
+        return self._A2
+
+    @property
+    def A4(self):
+        if self._A4 is None:
+            self._A4 = _smart_matrix_product(
+                    self.A2, self.A2, structure=self.structure)
+        return self._A4
+
+    @property
+    def A6(self):
+        if self._A6 is None:
+            self._A6 = _smart_matrix_product(
+                    self.A4, self.A2, structure=self.structure)
+        return self._A6
+
+    @property
+    def A8(self):
+        if self._A8 is None:
+            self._A8 = _smart_matrix_product(
+                    self.A6, self.A2, structure=self.structure)
+        return self._A8
+
+    @property
+    def A10(self):
+        if self._A10 is None:
+            self._A10 = _smart_matrix_product(
+                    self.A4, self.A6, structure=self.structure)
+        return self._A10
+
+    @property
+    def d4_tight(self):
+        if self._d4_exact is None:
+            self._d4_exact = _onenorm(self.A4)**(1/4.)
+        return self._d4_exact
+
+    @property
+    def d6_tight(self):
+        if self._d6_exact is None:
+            self._d6_exact = _onenorm(self.A6)**(1/6.)
+        return self._d6_exact
+
+    @property
+    def d8_tight(self):
+        if self._d8_exact is None:
+            self._d8_exact = _onenorm(self.A8)**(1/8.)
+        return self._d8_exact
+
+    @property
+    def d10_tight(self):
+        if self._d10_exact is None:
+            self._d10_exact = _onenorm(self.A10)**(1/10.)
+        return self._d10_exact
+
+    @property
+    def d4_loose(self):
+        if self.use_exact_onenorm:
+            return self.d4_tight
+        if self._d4_exact is not None:
+            return self._d4_exact
+        else:
+            if self._d4_approx is None:
+                self._d4_approx = _onenormest_matrix_power(self.A2, 2,
+                        structure=self.structure)**(1/4.)
+            return self._d4_approx
+
+    @property
+    def d6_loose(self):
+        if self.use_exact_onenorm:
+            return self.d6_tight
+        if self._d6_exact is not None:
+            return self._d6_exact
+        else:
+            if self._d6_approx is None:
+                self._d6_approx = _onenormest_matrix_power(self.A2, 3,
+                        structure=self.structure)**(1/6.)
+            return self._d6_approx
+
+    @property
+    def d8_loose(self):
+        if self.use_exact_onenorm:
+            return self.d8_tight
+        if self._d8_exact is not None:
+            return self._d8_exact
+        else:
+            if self._d8_approx is None:
+                self._d8_approx = _onenormest_matrix_power(self.A4, 2,
+                        structure=self.structure)**(1/8.)
+            return self._d8_approx
+
+    @property
+    def d10_loose(self):
+        if self.use_exact_onenorm:
+            return self.d10_tight
+        if self._d10_exact is not None:
+            return self._d10_exact
+        else:
+            if self._d10_approx is None:
+                self._d10_approx = _onenormest_product((self.A4, self.A6),
+                        structure=self.structure)**(1/10.)
+            return self._d10_approx
+
+    def pade3(self):
+        b = (120., 60., 12., 1.)
+        U = _smart_matrix_product(self.A,
+                b[3]*self.A2 + b[1]*self.ident,
+                structure=self.structure)
+        V = b[2]*self.A2 + b[0]*self.ident
+        return U, V
+
+    def pade5(self):
+        b = (30240., 15120., 3360., 420., 30., 1.)
+        U = _smart_matrix_product(self.A,
+                b[5]*self.A4 + b[3]*self.A2 + b[1]*self.ident,
+                structure=self.structure)
+        V = b[4]*self.A4 + b[2]*self.A2 + b[0]*self.ident
+        return U, V
+
+    def pade7(self):
+        b = (17297280., 8648640., 1995840., 277200., 25200., 1512., 56., 1.)
+        U = _smart_matrix_product(self.A,
+                b[7]*self.A6 + b[5]*self.A4 + b[3]*self.A2 + b[1]*self.ident,
+                structure=self.structure)
+        V = b[6]*self.A6 + b[4]*self.A4 + b[2]*self.A2 + b[0]*self.ident
+        return U, V
+
+    def pade9(self):
+        b = (17643225600., 8821612800., 2075673600., 302702400., 30270240.,
+                2162160., 110880., 3960., 90., 1.)
+        U = _smart_matrix_product(self.A,
+                (b[9]*self.A8 + b[7]*self.A6 + b[5]*self.A4 +
+                    b[3]*self.A2 + b[1]*self.ident),
+                structure=self.structure)
+        V = (b[8]*self.A8 + b[6]*self.A6 + b[4]*self.A4 +
+                b[2]*self.A2 + b[0]*self.ident)
+        return U, V
+
+    def pade13_scaled(self, s):
+        b = (64764752532480000., 32382376266240000., 7771770303897600.,
+                1187353796428800., 129060195264000., 10559470521600.,
+                670442572800., 33522128640., 1323241920., 40840800., 960960.,
+                16380., 182., 1.)
+        B = self.A * 2**-s
+        B2 = self.A2 * 2**(-2*s)
+        B4 = self.A4 * 2**(-4*s)
+        B6 = self.A6 * 2**(-6*s)
+        U2 = _smart_matrix_product(B6,
+                b[13]*B6 + b[11]*B4 + b[9]*B2,
+                structure=self.structure)
+        U = _smart_matrix_product(B,
+                (U2 + b[7]*B6 + b[5]*B4 +
+                    b[3]*B2 + b[1]*self.ident),
+                structure=self.structure)
+        V2 = _smart_matrix_product(B6,
+                b[12]*B6 + b[10]*B4 + b[8]*B2,
+                structure=self.structure)
+        V = V2 + b[6]*B6 + b[4]*B4 + b[2]*B2 + b[0]*self.ident
+        return U, V
+
+
+def expm(A):
+    """
+    Compute the matrix exponential using Pade approximation.
+
+    Parameters
+    ----------
+    A : (M,M) array_like or sparse array
+        2D Array or Matrix (sparse or dense) to be exponentiated
+
+    Returns
+    -------
+    expA : (M,M) ndarray
+        Matrix exponential of `A`
+
+    Notes
+    -----
+    This is algorithm (6.1) which is a simplification of algorithm (5.1).
+
+    .. versionadded:: 0.12.0
+
+    References
+    ----------
+    .. [1] Awad H. Al-Mohy and Nicholas J. Higham (2009)
+           "A New Scaling and Squaring Algorithm for the Matrix Exponential."
+           SIAM Journal on Matrix Analysis and Applications.
+           31 (3). pp. 970-989. ISSN 1095-7162
+
+    Examples
+    --------
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import expm
+    >>> A = csc_array([[1, 0, 0], [0, 2, 0], [0, 0, 3]])
+    >>> A.toarray()
+    array([[1, 0, 0],
+           [0, 2, 0],
+           [0, 0, 3]], dtype=int64)
+    >>> Aexp = expm(A)
+    >>> Aexp
+    <Compressed Sparse Column sparse array of dtype 'float64'
+        with 3 stored elements and shape (3, 3)>
+    >>> Aexp.toarray()
+    array([[  2.71828183,   0.        ,   0.        ],
+           [  0.        ,   7.3890561 ,   0.        ],
+           [  0.        ,   0.        ,  20.08553692]])
+    """
+    return _expm(A, use_exact_onenorm='auto')
+
+
+def _expm(A, use_exact_onenorm):
+    # Core of expm, separated to allow testing exact and approximate
+    # algorithms.
+
+    # Avoid indiscriminate asarray() to allow sparse or other strange arrays.
+    if isinstance(A, (list, tuple, np.matrix)):
+        A = np.asarray(A)
+    if len(A.shape) != 2 or A.shape[0] != A.shape[1]:
+        raise ValueError('expected a square matrix')
+
+    # gracefully handle size-0 input,
+    # carefully handling sparse scenario
+    if A.shape == (0, 0):
+        out = np.zeros([0, 0], dtype=A.dtype)
+        if issparse(A) or is_pydata_spmatrix(A):
+            return A.__class__(out)
+        return out
+
+    # Trivial case
+    if A.shape == (1, 1):
+        out = [[np.exp(A[0, 0])]]
+
+        # Avoid indiscriminate casting to ndarray to
+        # allow for sparse or other strange arrays
+        if issparse(A) or is_pydata_spmatrix(A):
+            return A.__class__(out)
+
+        return np.array(out)
+
+    # Ensure input is of float type, to avoid integer overflows etc.
+    if ((isinstance(A, np.ndarray) or issparse(A) or is_pydata_spmatrix(A))
+            and not np.issubdtype(A.dtype, np.inexact)):
+        A = A.astype(float)
+
+    # Detect upper triangularity.
+    structure = UPPER_TRIANGULAR if _is_upper_triangular(A) else None
+
+    if use_exact_onenorm == "auto":
+        # Hardcode a matrix order threshold for exact vs. estimated one-norms.
+        use_exact_onenorm = A.shape[0] < 200
+
+    # Track functions of A to help compute the matrix exponential.
+    h = _ExpmPadeHelper(
+            A, structure=structure, use_exact_onenorm=use_exact_onenorm)
+
+    # Try Pade order 3.
+    eta_1 = max(h.d4_loose, h.d6_loose)
+    if eta_1 < 1.495585217958292e-002 and _ell(h.A, 3) == 0:
+        U, V = h.pade3()
+        return _solve_P_Q(U, V, structure=structure)
+
+    # Try Pade order 5.
+    eta_2 = max(h.d4_tight, h.d6_loose)
+    if eta_2 < 2.539398330063230e-001 and _ell(h.A, 5) == 0:
+        U, V = h.pade5()
+        return _solve_P_Q(U, V, structure=structure)
+
+    # Try Pade orders 7 and 9.
+    eta_3 = max(h.d6_tight, h.d8_loose)
+    if eta_3 < 9.504178996162932e-001 and _ell(h.A, 7) == 0:
+        U, V = h.pade7()
+        return _solve_P_Q(U, V, structure=structure)
+    if eta_3 < 2.097847961257068e+000 and _ell(h.A, 9) == 0:
+        U, V = h.pade9()
+        return _solve_P_Q(U, V, structure=structure)
+
+    # Use Pade order 13.
+    eta_4 = max(h.d8_loose, h.d10_loose)
+    eta_5 = min(eta_3, eta_4)
+    theta_13 = 4.25
+
+    # Choose smallest s>=0 such that 2**(-s) eta_5 <= theta_13
+    if eta_5 == 0:
+        # Nilpotent special case
+        s = 0
+    else:
+        s = max(int(np.ceil(np.log2(eta_5 / theta_13))), 0)
+    s = s + _ell(2**-s * h.A, 13)
+    U, V = h.pade13_scaled(s)
+    X = _solve_P_Q(U, V, structure=structure)
+    if structure == UPPER_TRIANGULAR:
+        # Invoke Code Fragment 2.1.
+        X = _fragment_2_1(X, h.A, s)
+    else:
+        # X = r_13(A)^(2^s) by repeated squaring.
+        for i in range(s):
+            X = X.dot(X)
+    return X
+
+
+def _solve_P_Q(U, V, structure=None):
+    """
+    A helper function for expm_2009.
+
+    Parameters
+    ----------
+    U : ndarray
+        Pade numerator.
+    V : ndarray
+        Pade denominator.
+    structure : str, optional
+        A string describing the structure of both matrices `U` and `V`.
+        Only `upper_triangular` is currently supported.
+
+    Notes
+    -----
+    The `structure` argument is inspired by similar args
+    for theano and cvxopt functions.
+
+    """
+    P = U + V
+    Q = -U + V
+    if issparse(U) or is_pydata_spmatrix(U):
+        return spsolve(Q, P)
+    elif structure is None:
+        return solve(Q, P)
+    elif structure == UPPER_TRIANGULAR:
+        return solve_triangular(Q, P)
+    else:
+        raise ValueError('unsupported matrix structure: ' + str(structure))
+
+
+def _exp_sinch(a, x):
+    """
+    Stably evaluate exp(a)*sinh(x)/x
+
+    Notes
+    -----
+    The strategy of falling back to a sixth order Taylor expansion
+    was suggested by the Spallation Neutron Source docs
+    which was found on the internet by google search.
+    http://www.ornl.gov/~t6p/resources/xal/javadoc/gov/sns/tools/math/ElementaryFunction.html
+    The details of the cutoff point and the Horner-like evaluation
+    was picked without reference to anything in particular.
+
+    Note that sinch is not currently implemented in scipy.special,
+    whereas the "engineer's" definition of sinc is implemented.
+    The implementation of sinc involves a scaling factor of pi
+    that distinguishes it from the "mathematician's" version of sinc.
+
+    """
+
+    # If x is small then use sixth order Taylor expansion.
+    # How small is small? I am using the point where the relative error
+    # of the approximation is less than 1e-14.
+    # If x is large then directly evaluate sinh(x) / x.
+    if abs(x) < 0.0135:
+        x2 = x*x
+        return np.exp(a) * (1 + (x2/6.)*(1 + (x2/20.)*(1 + (x2/42.))))
+    else:
+        return (np.exp(a + x) - np.exp(a - x)) / (2*x)
+
+
+def _eq_10_42(lam_1, lam_2, t_12):
+    """
+    Equation (10.42) of Functions of Matrices: Theory and Computation.
+
+    Notes
+    -----
+    This is a helper function for _fragment_2_1 of expm_2009.
+    Equation (10.42) is on page 251 in the section on Schur algorithms.
+    In particular, section 10.4.3 explains the Schur-Parlett algorithm.
+    expm([[lam_1, t_12], [0, lam_1])
+    =
+    [[exp(lam_1), t_12*exp((lam_1 + lam_2)/2)*sinch((lam_1 - lam_2)/2)],
+    [0, exp(lam_2)]
+    """
+
+    # The plain formula t_12 * (exp(lam_2) - exp(lam_2)) / (lam_2 - lam_1)
+    # apparently suffers from cancellation, according to Higham's textbook.
+    # A nice implementation of sinch, defined as sinh(x)/x,
+    # will apparently work around the cancellation.
+    a = 0.5 * (lam_1 + lam_2)
+    b = 0.5 * (lam_1 - lam_2)
+    return t_12 * _exp_sinch(a, b)
+
+
+def _fragment_2_1(X, T, s):
+    """
+    A helper function for expm_2009.
+
+    Notes
+    -----
+    The argument X is modified in-place, but this modification is not the same
+    as the returned value of the function.
+    This function also takes pains to do things in ways that are compatible
+    with sparse arrays, for example by avoiding fancy indexing
+    and by using methods of the matrices whenever possible instead of
+    using functions of the numpy or scipy libraries themselves.
+
+    """
+    # Form X = r_m(2^-s T)
+    # Replace diag(X) by exp(2^-s diag(T)).
+    n = X.shape[0]
+    diag_T = np.ravel(T.diagonal().copy())
+
+    # Replace diag(X) by exp(2^-s diag(T)).
+    scale = 2 ** -s
+    exp_diag = np.exp(scale * diag_T)
+    for k in range(n):
+        X[k, k] = exp_diag[k]
+
+    for i in range(s-1, -1, -1):
+        X = X.dot(X)
+
+        # Replace diag(X) by exp(2^-i diag(T)).
+        scale = 2 ** -i
+        exp_diag = np.exp(scale * diag_T)
+        for k in range(n):
+            X[k, k] = exp_diag[k]
+
+        # Replace (first) superdiagonal of X by explicit formula
+        # for superdiagonal of exp(2^-i T) from Eq (10.42) of
+        # the author's 2008 textbook
+        # Functions of Matrices: Theory and Computation.
+        for k in range(n-1):
+            lam_1 = scale * diag_T[k]
+            lam_2 = scale * diag_T[k+1]
+            t_12 = scale * T[k, k+1]
+            value = _eq_10_42(lam_1, lam_2, t_12)
+            X[k, k+1] = value
+
+    # Return the updated X matrix.
+    return X
+
+
+def _ell(A, m):
+    """
+    A helper function for expm_2009.
+
+    Parameters
+    ----------
+    A : linear operator
+        A linear operator whose norm of power we care about.
+    m : int
+        The power of the linear operator
+
+    Returns
+    -------
+    value : int
+        A value related to a bound.
+
+    """
+    if len(A.shape) != 2 or A.shape[0] != A.shape[1]:
+        raise ValueError('expected A to be like a square matrix')
+
+    # The c_i are explained in (2.2) and (2.6) of the 2005 expm paper.
+    # They are coefficients of terms of a generating function series expansion.
+    c_i = {3: 100800.,
+           5: 10059033600.,
+           7: 4487938430976000.,
+           9: 5914384781877411840000.,
+           13: 113250775606021113483283660800000000.
+           }
+    abs_c_recip = c_i[m]
+
+    # This is explained after Eq. (1.2) of the 2009 expm paper.
+    # It is the "unit roundoff" of IEEE double precision arithmetic.
+    u = 2**-53
+
+    # Compute the one-norm of matrix power p of abs(A).
+    A_abs_onenorm = _onenorm_matrix_power_nnm(abs(A), 2*m + 1)
+
+    # Treat zero norm as a special case.
+    if not A_abs_onenorm:
+        return 0
+
+    alpha = A_abs_onenorm / (_onenorm(A) * abs_c_recip)
+    log2_alpha_div_u = np.log2(alpha/u)
+    value = int(np.ceil(log2_alpha_div_u / (2 * m)))
+    return max(value, 0)
+
+def matrix_power(A, power):
+    """
+    Raise a square matrix to the integer power, `power`.
+
+    For non-negative integers, ``A**power`` is computed using repeated
+    matrix multiplications. Negative integers are not supported. 
+
+    Parameters
+    ----------
+    A : (M, M) square sparse array or matrix
+        sparse array that will be raised to power `power`
+    power : int
+        Exponent used to raise sparse array `A`
+
+    Returns
+    -------
+    A**power : (M, M) sparse array or matrix
+        The output matrix will be the same shape as A, and will preserve
+        the class of A, but the format of the output may be changed.
+    
+    Notes
+    -----
+    This uses a recursive implementation of the matrix power. For computing
+    the matrix power using a reasonably large `power`, this may be less efficient
+    than computing the product directly, using A @ A @ ... @ A.
+    This is contingent upon the number of nonzero entries in the matrix. 
+
+    .. versionadded:: 1.12.0
+
+    Examples
+    --------
+    >>> from scipy import sparse
+    >>> A = sparse.csc_array([[0,1,0],[1,0,1],[0,1,0]])
+    >>> A.todense()
+    array([[0, 1, 0],
+           [1, 0, 1],
+           [0, 1, 0]])
+    >>> (A @ A).todense()
+    array([[1, 0, 1],
+           [0, 2, 0],
+           [1, 0, 1]])
+    >>> A2 = sparse.linalg.matrix_power(A, 2)
+    >>> A2.todense()
+    array([[1, 0, 1],
+           [0, 2, 0],
+           [1, 0, 1]])
+    >>> A4 = sparse.linalg.matrix_power(A, 4)
+    >>> A4.todense()
+    array([[2, 0, 2],
+           [0, 4, 0],
+           [2, 0, 2]])
+
+    """
+    M, N = A.shape
+    if M != N:
+        raise TypeError('sparse matrix is not square')
+
+    if isintlike(power):
+        power = int(power)
+        if power < 0:
+            raise ValueError('exponent must be >= 0')
+
+        if power == 0:
+            return eye_array(M, dtype=A.dtype)
+
+        if power == 1:
+            return A.copy()
+
+        tmp = matrix_power(A, power // 2)
+        if power % 2:
+            return A @ tmp @ tmp
+        else:
+            return tmp @ tmp
+    else:
+        raise ValueError("exponent must be an integer")

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_norm.py

@@ -0,0 +1,195 @@
+"""Sparse matrix norms.
+
+"""
+import numpy as np
+from scipy.sparse import issparse
+from scipy.sparse.linalg import svds
+from scipy.sparse._sputils import convert_pydata_sparse_to_scipy
+import scipy.sparse as sp
+
+from numpy import sqrt, abs
+
+__all__ = ['norm']
+
+
+def _sparse_frobenius_norm(x):
+    data = sp._sputils._todata(x)
+    return np.linalg.norm(data)
+
+
+def norm(x, ord=None, axis=None):
+    """
+    Norm of a sparse matrix
+
+    This function is able to return one of seven different matrix norms,
+    depending on the value of the ``ord`` parameter.
+
+    Parameters
+    ----------
+    x : a sparse array
+        Input sparse array.
+    ord : {non-zero int, inf, -inf, 'fro'}, optional
+        Order of the norm (see table under ``Notes``). inf means numpy's
+        `inf` object.
+    axis : {int, 2-tuple of ints, None}, optional
+        If `axis` is an integer, it specifies the axis of `x` along which to
+        compute the vector norms.  If `axis` is a 2-tuple, it specifies the
+        axes that hold 2-D matrices, and the matrix norms of these matrices
+        are computed.  If `axis` is None then either a vector norm (when `x`
+        is 1-D) or a matrix norm (when `x` is 2-D) is returned.
+
+    Returns
+    -------
+    n : float or ndarray
+
+    Notes
+    -----
+    Some of the ord are not implemented because some associated functions like,
+    _multi_svd_norm, are not yet available for sparse array.
+
+    This docstring is modified based on numpy.linalg.norm.
+    https://github.com/numpy/numpy/blob/main/numpy/linalg/linalg.py
+
+    The following norms can be calculated:
+
+    =====  ============================
+    ord    norm for sparse arrays
+    =====  ============================
+    None   Frobenius norm
+    'fro'  Frobenius norm
+    inf    max(sum(abs(x), axis=1))
+    -inf   min(sum(abs(x), axis=1))
+    0      abs(x).sum(axis=axis)
+    1      max(sum(abs(x), axis=0))
+    -1     min(sum(abs(x), axis=0))
+    2      Spectral norm (the largest singular value)
+    -2     Not implemented
+    other  Not implemented
+    =====  ============================
+
+    The Frobenius norm is given by [1]_:
+
+        :math:`||A||_F = [\\sum_{i,j} abs(a_{i,j})^2]^{1/2}`
+
+    References
+    ----------
+    .. [1] G. H. Golub and C. F. Van Loan, *Matrix Computations*,
+        Baltimore, MD, Johns Hopkins University Press, 1985, pg. 15
+
+    Examples
+    --------
+    >>> from scipy.sparse import csr_array, diags_array
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg import norm
+    >>> a = np.arange(9) - 4
+    >>> a
+    array([-4, -3, -2, -1, 0, 1, 2, 3, 4])
+    >>> b = a.reshape((3, 3))
+    >>> b
+    array([[-4, -3, -2],
+           [-1, 0, 1],
+           [ 2, 3, 4]])
+
+    >>> b = csr_array(b)
+    >>> norm(b)
+    7.745966692414834
+    >>> norm(b, 'fro')
+    7.745966692414834
+    >>> norm(b, np.inf)
+    9
+    >>> norm(b, -np.inf)
+    2
+    >>> norm(b, 1)
+    7
+    >>> norm(b, -1)
+    6
+
+    The matrix 2-norm or the spectral norm is the largest singular
+    value, computed approximately and with limitations.
+
+    >>> b = diags_array([-1, 1], [0, 1], shape=(9, 10))
+    >>> norm(b, 2)
+    1.9753...
+    """
+    x = convert_pydata_sparse_to_scipy(x, target_format="csr")
+    if not issparse(x):
+        raise TypeError("input is not sparse. use numpy.linalg.norm")
+
+    # Check the default case first and handle it immediately.
+    if axis is None and ord in (None, 'fro', 'f'):
+        return _sparse_frobenius_norm(x)
+
+    # Some norms require functions that are not implemented for all types.
+    x = x.tocsr()
+
+    if axis is None:
+        axis = tuple(range(x.ndim))
+    elif not isinstance(axis, tuple):
+        msg = "'axis' must be None, an integer or a tuple of integers"
+        try:
+            int_axis = int(axis)
+        except TypeError as e:
+            raise TypeError(msg) from e
+        if axis != int_axis:
+            raise TypeError(msg)
+        axis = (int_axis,)
+
+    nd = x.ndim
+    if len(axis) == 2:
+        row_axis, col_axis = axis
+        if not (-nd <= row_axis < nd and -nd <= col_axis < nd):
+            message = f'Invalid axis {axis!r} for an array with shape {x.shape!r}'
+            raise ValueError(message)
+        if row_axis % nd == col_axis % nd:
+            raise ValueError('Duplicate axes given.')
+        if ord == 2:
+            # Only solver="lobpcg" supports all numpy dtypes
+            _, s, _ = svds(x, k=1, solver="lobpcg")
+            return s[0]
+        elif ord == -2:
+            raise NotImplementedError
+            #return _multi_svd_norm(x, row_axis, col_axis, amin)
+        elif ord == 1:
+            return abs(x).sum(axis=row_axis).max()
+        elif ord == np.inf:
+            return abs(x).sum(axis=col_axis).max()
+        elif ord == -1:
+            return abs(x).sum(axis=row_axis).min()
+        elif ord == -np.inf:
+            return abs(x).sum(axis=col_axis).min()
+        elif ord in (None, 'f', 'fro'):
+            # The axis order does not matter for this norm.
+            return _sparse_frobenius_norm(x)
+        else:
+            raise ValueError("Invalid norm order for matrices.")
+    elif len(axis) == 1:
+        a, = axis
+        if not (-nd <= a < nd):
+            message = f'Invalid axis {axis!r} for an array with shape {x.shape!r}'
+            raise ValueError(message)
+        if ord == np.inf:
+            M = abs(x).max(axis=a)
+        elif ord == -np.inf:
+            M = abs(x).min(axis=a)
+        elif ord == 0:
+            # Zero norm
+            M = (x != 0).sum(axis=a)
+        elif ord == 1:
+            # special case for speedup
+            M = abs(x).sum(axis=a)
+        elif ord in (2, None):
+            M = sqrt(abs(x).power(2).sum(axis=a))
+        else:
+            try:
+                ord + 1
+            except TypeError as e:
+                raise ValueError('Invalid norm order for vectors.') from e
+            M = np.power(abs(x).power(ord).sum(axis=a), 1 / ord)
+        if hasattr(M, 'toarray'):
+            return M.toarray().ravel()
+        elif hasattr(M, 'A'):
+            return M.A.ravel()
+        else:
+            return M.ravel()
+    else:
+        raise ValueError("Improper number of dimensions to norm.")

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_onenormest.py

@@ -0,0 +1,467 @@
+"""Sparse block 1-norm estimator.
+"""
+
+import numpy as np
+from scipy.sparse.linalg import aslinearoperator
+
+
+__all__ = ['onenormest']
+
+
+def onenormest(A, t=2, itmax=5, compute_v=False, compute_w=False):
+    """
+    Compute a lower bound of the 1-norm of a sparse array.
+
+    Parameters
+    ----------
+    A : ndarray or other linear operator
+        A linear operator that can be transposed and that can
+        produce matrix products.
+    t : int, optional
+        A positive parameter controlling the tradeoff between
+        accuracy versus time and memory usage.
+        Larger values take longer and use more memory
+        but give more accurate output.
+    itmax : int, optional
+        Use at most this many iterations.
+    compute_v : bool, optional
+        Request a norm-maximizing linear operator input vector if True.
+    compute_w : bool, optional
+        Request a norm-maximizing linear operator output vector if True.
+
+    Returns
+    -------
+    est : float
+        An underestimate of the 1-norm of the sparse array.
+    v : ndarray, optional
+        The vector such that ||Av||_1 == est*||v||_1.
+        It can be thought of as an input to the linear operator
+        that gives an output with particularly large norm.
+    w : ndarray, optional
+        The vector Av which has relatively large 1-norm.
+        It can be thought of as an output of the linear operator
+        that is relatively large in norm compared to the input.
+
+    Notes
+    -----
+    This is algorithm 2.4 of [1].
+
+    In [2] it is described as follows.
+    "This algorithm typically requires the evaluation of
+    about 4t matrix-vector products and almost invariably
+    produces a norm estimate (which is, in fact, a lower
+    bound on the norm) correct to within a factor 3."
+
+    .. versionadded:: 0.13.0
+
+    References
+    ----------
+    .. [1] Nicholas J. Higham and Francoise Tisseur (2000),
+           "A Block Algorithm for Matrix 1-Norm Estimation,
+           with an Application to 1-Norm Pseudospectra."
+           SIAM J. Matrix Anal. Appl. Vol. 21, No. 4, pp. 1185-1201.
+
+    .. [2] Awad H. Al-Mohy and Nicholas J. Higham (2009),
+           "A new scaling and squaring algorithm for the matrix exponential."
+           SIAM J. Matrix Anal. Appl. Vol. 31, No. 3, pp. 970-989.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse import csc_array
+    >>> from scipy.sparse.linalg import onenormest
+    >>> A = csc_array([[1., 0., 0.], [5., 8., 2.], [0., -1., 0.]], dtype=float)
+    >>> A.toarray()
+    array([[ 1.,  0.,  0.],
+           [ 5.,  8.,  2.],
+           [ 0., -1.,  0.]])
+    >>> onenormest(A)
+    9.0
+    >>> np.linalg.norm(A.toarray(), ord=1)
+    9.0
+    """
+
+    # Check the input.
+    A = aslinearoperator(A)
+    if A.shape[0] != A.shape[1]:
+        raise ValueError('expected the operator to act like a square matrix')
+
+    # If the operator size is small compared to t,
+    # then it is easier to compute the exact norm.
+    # Otherwise estimate the norm.
+    n = A.shape[1]
+    if t >= n:
+        A_explicit = np.asarray(aslinearoperator(A).matmat(np.identity(n)))
+        if A_explicit.shape != (n, n):
+            raise Exception('internal error: ',
+                    'unexpected shape ' + str(A_explicit.shape))
+        col_abs_sums = abs(A_explicit).sum(axis=0)
+        if col_abs_sums.shape != (n, ):
+            raise Exception('internal error: ',
+                    'unexpected shape ' + str(col_abs_sums.shape))
+        argmax_j = np.argmax(col_abs_sums)
+        v = elementary_vector(n, argmax_j)
+        w = A_explicit[:, argmax_j]
+        est = col_abs_sums[argmax_j]
+    else:
+        est, v, w, nmults, nresamples = _onenormest_core(A, A.H, t, itmax)
+
+    # Report the norm estimate along with some certificates of the estimate.
+    if compute_v or compute_w:
+        result = (est,)
+        if compute_v:
+            result += (v,)
+        if compute_w:
+            result += (w,)
+        return result
+    else:
+        return est
+
+
+def _blocked_elementwise(func):
+    """
+    Decorator for an elementwise function, to apply it blockwise along
+    first dimension, to avoid excessive memory usage in temporaries.
+    """
+    block_size = 2**20
+
+    def wrapper(x):
+        if x.shape[0] < block_size:
+            return func(x)
+        else:
+            y0 = func(x[:block_size])
+            y = np.zeros((x.shape[0],) + y0.shape[1:], dtype=y0.dtype)
+            y[:block_size] = y0
+            del y0
+            for j in range(block_size, x.shape[0], block_size):
+                y[j:j+block_size] = func(x[j:j+block_size])
+            return y
+    return wrapper
+
+
+@_blocked_elementwise
+def sign_round_up(X):
+    """
+    This should do the right thing for both real and complex matrices.
+
+    From Higham and Tisseur:
+    "Everything in this section remains valid for complex matrices
+    provided that sign(A) is redefined as the matrix (aij / |aij|)
+    (and sign(0) = 1) transposes are replaced by conjugate transposes."
+
+    """
+    Y = X.copy()
+    Y[Y == 0] = 1
+    Y /= np.abs(Y)
+    return Y
+
+
+@_blocked_elementwise
+def _max_abs_axis1(X):
+    return np.max(np.abs(X), axis=1)
+
+
+def _sum_abs_axis0(X):
+    block_size = 2**20
+    r = None
+    for j in range(0, X.shape[0], block_size):
+        y = np.sum(np.abs(X[j:j+block_size]), axis=0)
+        if r is None:
+            r = y
+        else:
+            r += y
+    return r
+
+
+def elementary_vector(n, i):
+    v = np.zeros(n, dtype=float)
+    v[i] = 1
+    return v
+
+
+def vectors_are_parallel(v, w):
+    # Columns are considered parallel when they are equal or negative.
+    # Entries are required to be in {-1, 1},
+    # which guarantees that the magnitudes of the vectors are identical.
+    if v.ndim != 1 or v.shape != w.shape:
+        raise ValueError('expected conformant vectors with entries in {-1,1}')
+    n = v.shape[0]
+    return np.dot(v, w) == n
+
+
+def every_col_of_X_is_parallel_to_a_col_of_Y(X, Y):
+    for v in X.T:
+        if not any(vectors_are_parallel(v, w) for w in Y.T):
+            return False
+    return True
+
+
+def column_needs_resampling(i, X, Y=None):
+    # column i of X needs resampling if either
+    # it is parallel to a previous column of X or
+    # it is parallel to a column of Y
+    n, t = X.shape
+    v = X[:, i]
+    if any(vectors_are_parallel(v, X[:, j]) for j in range(i)):
+        return True
+    if Y is not None:
+        if any(vectors_are_parallel(v, w) for w in Y.T):
+            return True
+    return False
+
+
+def resample_column(i, X):
+    X[:, i] = np.random.randint(0, 2, size=X.shape[0])*2 - 1
+
+
+def less_than_or_close(a, b):
+    return np.allclose(a, b) or (a < b)
+
+
+def _algorithm_2_2(A, AT, t):
+    """
+    This is Algorithm 2.2.
+
+    Parameters
+    ----------
+    A : ndarray or other linear operator
+        A linear operator that can produce matrix products.
+    AT : ndarray or other linear operator
+        The transpose of A.
+    t : int, optional
+        A positive parameter controlling the tradeoff between
+        accuracy versus time and memory usage.
+
+    Returns
+    -------
+    g : sequence
+        A non-negative decreasing vector
+        such that g[j] is a lower bound for the 1-norm
+        of the column of A of jth largest 1-norm.
+        The first entry of this vector is therefore a lower bound
+        on the 1-norm of the linear operator A.
+        This sequence has length t.
+    ind : sequence
+        The ith entry of ind is the index of the column A whose 1-norm
+        is given by g[i].
+        This sequence of indices has length t, and its entries are
+        chosen from range(n), possibly with repetition,
+        where n is the order of the operator A.
+
+    Notes
+    -----
+    This algorithm is mainly for testing.
+    It uses the 'ind' array in a way that is similar to
+    its usage in algorithm 2.4. This algorithm 2.2 may be easier to test,
+    so it gives a chance of uncovering bugs related to indexing
+    which could have propagated less noticeably to algorithm 2.4.
+
+    """
+    A_linear_operator = aslinearoperator(A)
+    AT_linear_operator = aslinearoperator(AT)
+    n = A_linear_operator.shape[0]
+
+    # Initialize the X block with columns of unit 1-norm.
+    X = np.ones((n, t))
+    if t > 1:
+        X[:, 1:] = np.random.randint(0, 2, size=(n, t-1))*2 - 1
+    X /= float(n)
+
+    # Iteratively improve the lower bounds.
+    # Track extra things, to assert invariants for debugging.
+    g_prev = None
+    h_prev = None
+    k = 1
+    ind = range(t)
+    while True:
+        Y = np.asarray(A_linear_operator.matmat(X))
+        g = _sum_abs_axis0(Y)
+        best_j = np.argmax(g)
+        g.sort()
+        g = g[::-1]
+        S = sign_round_up(Y)
+        Z = np.asarray(AT_linear_operator.matmat(S))
+        h = _max_abs_axis1(Z)
+
+        # If this algorithm runs for fewer than two iterations,
+        # then its return values do not have the properties indicated
+        # in the description of the algorithm.
+        # In particular, the entries of g are not 1-norms of any
+        # column of A until the second iteration.
+        # Therefore we will require the algorithm to run for at least
+        # two iterations, even though this requirement is not stated
+        # in the description of the algorithm.
+        if k >= 2:
+            if less_than_or_close(max(h), np.dot(Z[:, best_j], X[:, best_j])):
+                break
+        ind = np.argsort(h)[::-1][:t]
+        h = h[ind]
+        for j in range(t):
+            X[:, j] = elementary_vector(n, ind[j])
+
+        # Check invariant (2.2).
+        if k >= 2:
+            if not less_than_or_close(g_prev[0], h_prev[0]):
+                raise Exception('invariant (2.2) is violated')
+            if not less_than_or_close(h_prev[0], g[0]):
+                raise Exception('invariant (2.2) is violated')
+
+        # Check invariant (2.3).
+        if k >= 3:
+            for j in range(t):
+                if not less_than_or_close(g[j], g_prev[j]):
+                    raise Exception('invariant (2.3) is violated')
+
+        # Update for the next iteration.
+        g_prev = g
+        h_prev = h
+        k += 1
+
+    # Return the lower bounds and the corresponding column indices.
+    return g, ind
+
+
+def _onenormest_core(A, AT, t, itmax):
+    """
+    Compute a lower bound of the 1-norm of a sparse array.
+
+    Parameters
+    ----------
+    A : ndarray or other linear operator
+        A linear operator that can produce matrix products.
+    AT : ndarray or other linear operator
+        The transpose of A.
+    t : int, optional
+        A positive parameter controlling the tradeoff between
+        accuracy versus time and memory usage.
+    itmax : int, optional
+        Use at most this many iterations.
+
+    Returns
+    -------
+    est : float
+        An underestimate of the 1-norm of the sparse array.
+    v : ndarray, optional
+        The vector such that ||Av||_1 == est*||v||_1.
+        It can be thought of as an input to the linear operator
+        that gives an output with particularly large norm.
+    w : ndarray, optional
+        The vector Av which has relatively large 1-norm.
+        It can be thought of as an output of the linear operator
+        that is relatively large in norm compared to the input.
+    nmults : int, optional
+        The number of matrix products that were computed.
+    nresamples : int, optional
+        The number of times a parallel column was observed,
+        necessitating a re-randomization of the column.
+
+    Notes
+    -----
+    This is algorithm 2.4.
+
+    """
+    # This function is a more or less direct translation
+    # of Algorithm 2.4 from the Higham and Tisseur (2000) paper.
+    A_linear_operator = aslinearoperator(A)
+    AT_linear_operator = aslinearoperator(AT)
+    if itmax < 2:
+        raise ValueError('at least two iterations are required')
+    if t < 1:
+        raise ValueError('at least one column is required')
+    n = A.shape[0]
+    if t >= n:
+        raise ValueError('t should be smaller than the order of A')
+    # Track the number of big*small matrix multiplications
+    # and the number of resamplings.
+    nmults = 0
+    nresamples = 0
+    # "We now explain our choice of starting matrix.  We take the first
+    # column of X to be the vector of 1s [...] This has the advantage that
+    # for a matrix with nonnegative elements the algorithm converges
+    # with an exact estimate on the second iteration, and such matrices
+    # arise in applications [...]"
+    X = np.ones((n, t), dtype=float)
+    # "The remaining columns are chosen as rand{-1,1},
+    # with a check for and correction of parallel columns,
+    # exactly as for S in the body of the algorithm."
+    if t > 1:
+        for i in range(1, t):
+            # These are technically initial samples, not resamples,
+            # so the resampling count is not incremented.
+            resample_column(i, X)
+        for i in range(t):
+            while column_needs_resampling(i, X):
+                resample_column(i, X)
+                nresamples += 1
+    # "Choose starting matrix X with columns of unit 1-norm."
+    X /= float(n)
+    # "indices of used unit vectors e_j"
+    ind_hist = np.zeros(0, dtype=np.intp)
+    est_old = 0
+    S = np.zeros((n, t), dtype=float)
+    k = 1
+    ind = None
+    while True:
+        Y = np.asarray(A_linear_operator.matmat(X))
+        nmults += 1
+        mags = _sum_abs_axis0(Y)
+        est = np.max(mags)
+        best_j = np.argmax(mags)
+        if est > est_old or k == 2:
+            if k >= 2:
+                ind_best = ind[best_j]
+            w = Y[:, best_j]
+        # (1)
+        if k >= 2 and est <= est_old:
+            est = est_old
+            break
+        est_old = est
+        S_old = S
+        if k > itmax:
+            break
+        S = sign_round_up(Y)
+        del Y
+        # (2)
+        if every_col_of_X_is_parallel_to_a_col_of_Y(S, S_old):
+            break
+        if t > 1:
+            # "Ensure that no column of S is parallel to another column of S
+            # or to a column of S_old by replacing columns of S by rand{-1,1}."
+            for i in range(t):
+                while column_needs_resampling(i, S, S_old):
+                    resample_column(i, S)
+                    nresamples += 1
+        del S_old
+        # (3)
+        Z = np.asarray(AT_linear_operator.matmat(S))
+        nmults += 1
+        h = _max_abs_axis1(Z)
+        del Z
+        # (4)
+        if k >= 2 and max(h) == h[ind_best]:
+            break
+        # "Sort h so that h_first >= ... >= h_last
+        # and re-order ind correspondingly."
+        #
+        # Later on, we will need at most t+len(ind_hist) largest
+        # entries, so drop the rest
+        ind = np.argsort(h)[::-1][:t+len(ind_hist)].copy()
+        del h
+        if t > 1:
+            # (5)
+            # Break if the most promising t vectors have been visited already.
+            if np.isin(ind[:t], ind_hist).all():
+                break
+            # Put the most promising unvisited vectors at the front of the list
+            # and put the visited vectors at the end of the list.
+            # Preserve the order of the indices induced by the ordering of h.
+            seen = np.isin(ind, ind_hist)
+            ind = np.concatenate((ind[~seen], ind[seen]))
+        for j in range(t):
+            X[:, j] = elementary_vector(n, ind[j])
+
+        new_ind = ind[:t][~np.isin(ind[:t], ind_hist)]
+        ind_hist = np.concatenate((ind_hist, new_ind))
+        k += 1
+    v = elementary_vector(n, ind_best)
+    return est, v, w, nmults, nresamples

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_special_sparse_arrays.py

@@ -0,0 +1,948 @@
+import numpy as np
+from scipy.sparse.linalg import LinearOperator
+from scipy.sparse import kron, eye, dia_array
+
+__all__ = ['LaplacianNd']
+# Sakurai and Mikota classes are intended for tests and benchmarks
+# and explicitly not included in the public API of this module.
+
+
+class LaplacianNd(LinearOperator):
+    """
+    The grid Laplacian in ``N`` dimensions and its eigenvalues/eigenvectors.
+
+    Construct Laplacian on a uniform rectangular grid in `N` dimensions
+    and output its eigenvalues and eigenvectors.
+    The Laplacian ``L`` is square, negative definite, real symmetric array
+    with signed integer entries and zeros otherwise.
+
+    Parameters
+    ----------
+    grid_shape : tuple
+        A tuple of integers of length ``N`` (corresponding to the dimension of
+        the Lapacian), where each entry gives the size of that dimension. The
+        Laplacian matrix is square of the size ``np.prod(grid_shape)``.
+    boundary_conditions : {'neumann', 'dirichlet', 'periodic'}, optional
+        The type of the boundary conditions on the boundaries of the grid.
+        Valid values are ``'dirichlet'`` or ``'neumann'``(default) or
+        ``'periodic'``.
+    dtype : dtype
+        Numerical type of the array. Default is ``np.int8``.
+
+    Methods
+    -------
+    toarray()
+        Construct a dense array from Laplacian data
+    tosparse()
+        Construct a sparse array from Laplacian data
+    eigenvalues(m=None)
+        Construct a 1D array of `m` largest (smallest in absolute value)
+        eigenvalues of the Laplacian matrix in ascending order.
+    eigenvectors(m=None):
+        Construct the array with columns made of `m` eigenvectors (``float``)
+        of the ``Nd`` Laplacian corresponding to the `m` ordered eigenvalues.
+
+    .. versionadded:: 1.12.0
+
+    Notes
+    -----
+    Compared to the MATLAB/Octave implementation [1] of 1-, 2-, and 3-D
+    Laplacian, this code allows the arbitrary N-D case and the matrix-free
+    callable option, but is currently limited to pure Dirichlet, Neumann or
+    Periodic boundary conditions only.
+
+    The Laplacian matrix of a graph (`scipy.sparse.csgraph.laplacian`) of a
+    rectangular grid corresponds to the negative Laplacian with the Neumann
+    conditions, i.e., ``boundary_conditions = 'neumann'``.
+
+    All eigenvalues and eigenvectors of the discrete Laplacian operator for
+    an ``N``-dimensional  regular grid of shape `grid_shape` with the grid
+    step size ``h=1`` are analytically known [2].
+
+    References
+    ----------
+    .. [1] https://github.com/lobpcg/blopex/blob/master/blopex_\
+tools/matlab/laplacian/laplacian.m
+    .. [2] "Eigenvalues and eigenvectors of the second derivative", Wikipedia
+           https://en.wikipedia.org/wiki/Eigenvalues_and_eigenvectors_\
+of_the_second_derivative
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg import LaplacianNd
+    >>> from scipy.sparse import diags, csgraph
+    >>> from scipy.linalg import eigvalsh
+
+    The one-dimensional Laplacian demonstrated below for pure Neumann boundary
+    conditions on a regular grid with ``n=6`` grid points is exactly the
+    negative graph Laplacian for the undirected linear graph with ``n``
+    vertices using the sparse adjacency matrix ``G`` represented by the
+    famous tri-diagonal matrix:
+
+    >>> n = 6
+    >>> G = diags(np.ones(n - 1), 1, format='csr')
+    >>> Lf = csgraph.laplacian(G, symmetrized=True, form='function')
+    >>> grid_shape = (n, )
+    >>> lap = LaplacianNd(grid_shape, boundary_conditions='neumann')
+    >>> np.array_equal(lap.matmat(np.eye(n)), -Lf(np.eye(n)))
+    True
+
+    Since all matrix entries of the Laplacian are integers, ``'int8'`` is
+    the default dtype for storing matrix representations.
+
+    >>> lap.tosparse()
+    <DIAgonal sparse array of dtype 'int8'
+        with 16 stored elements (3 diagonals) and shape (6, 6)>
+    >>> lap.toarray()
+    array([[-1,  1,  0,  0,  0,  0],
+           [ 1, -2,  1,  0,  0,  0],
+           [ 0,  1, -2,  1,  0,  0],
+           [ 0,  0,  1, -2,  1,  0],
+           [ 0,  0,  0,  1, -2,  1],
+           [ 0,  0,  0,  0,  1, -1]], dtype=int8)
+    >>> np.array_equal(lap.matmat(np.eye(n)), lap.toarray())
+    True
+    >>> np.array_equal(lap.tosparse().toarray(), lap.toarray())
+    True
+
+    Any number of extreme eigenvalues and/or eigenvectors can be computed.
+    
+    >>> lap = LaplacianNd(grid_shape, boundary_conditions='periodic')
+    >>> lap.eigenvalues()
+    array([-4., -3., -3., -1., -1.,  0.])
+    >>> lap.eigenvalues()[-2:]
+    array([-1.,  0.])
+    >>> lap.eigenvalues(2)
+    array([-1.,  0.])
+    >>> lap.eigenvectors(1)
+    array([[0.40824829],
+           [0.40824829],
+           [0.40824829],
+           [0.40824829],
+           [0.40824829],
+           [0.40824829]])
+    >>> lap.eigenvectors(2)
+    array([[ 0.5       ,  0.40824829],
+           [ 0.        ,  0.40824829],
+           [-0.5       ,  0.40824829],
+           [-0.5       ,  0.40824829],
+           [ 0.        ,  0.40824829],
+           [ 0.5       ,  0.40824829]])
+    >>> lap.eigenvectors()
+    array([[ 0.40824829,  0.28867513,  0.28867513,  0.5       ,  0.5       ,
+             0.40824829],
+           [-0.40824829, -0.57735027, -0.57735027,  0.        ,  0.        ,
+             0.40824829],
+           [ 0.40824829,  0.28867513,  0.28867513, -0.5       , -0.5       ,
+             0.40824829],
+           [-0.40824829,  0.28867513,  0.28867513, -0.5       , -0.5       ,
+             0.40824829],
+           [ 0.40824829, -0.57735027, -0.57735027,  0.        ,  0.        ,
+             0.40824829],
+           [-0.40824829,  0.28867513,  0.28867513,  0.5       ,  0.5       ,
+             0.40824829]])
+
+    The two-dimensional Laplacian is illustrated on a regular grid with
+    ``grid_shape = (2, 3)`` points in each dimension.
+
+    >>> grid_shape = (2, 3)
+    >>> n = np.prod(grid_shape)
+
+    Numeration of grid points is as follows:
+
+    >>> np.arange(n).reshape(grid_shape + (-1,))
+    array([[[0],
+            [1],
+            [2]],
+    <BLANKLINE>
+           [[3],
+            [4],
+            [5]]])
+
+    Each of the boundary conditions ``'dirichlet'``, ``'periodic'``, and
+    ``'neumann'`` is illustrated separately; with ``'dirichlet'``
+
+    >>> lap = LaplacianNd(grid_shape, boundary_conditions='dirichlet')
+    >>> lap.tosparse()
+    <Compressed Sparse Row sparse array of dtype 'int8'
+        with 20 stored elements and shape (6, 6)>
+    >>> lap.toarray()
+    array([[-4,  1,  0,  1,  0,  0],
+           [ 1, -4,  1,  0,  1,  0],
+           [ 0,  1, -4,  0,  0,  1],
+           [ 1,  0,  0, -4,  1,  0],
+           [ 0,  1,  0,  1, -4,  1],
+           [ 0,  0,  1,  0,  1, -4]], dtype=int8)
+    >>> np.array_equal(lap.matmat(np.eye(n)), lap.toarray())
+    True
+    >>> np.array_equal(lap.tosparse().toarray(), lap.toarray())
+    True
+    >>> lap.eigenvalues()
+    array([-6.41421356, -5.        , -4.41421356, -3.58578644, -3.        ,
+           -1.58578644])
+    >>> eigvals = eigvalsh(lap.toarray().astype(np.float64))
+    >>> np.allclose(lap.eigenvalues(), eigvals)
+    True
+    >>> np.allclose(lap.toarray() @ lap.eigenvectors(),
+    ...             lap.eigenvectors() @ np.diag(lap.eigenvalues()))
+    True
+
+    with ``'periodic'``
+
+    >>> lap = LaplacianNd(grid_shape, boundary_conditions='periodic')
+    >>> lap.tosparse()
+    <Compressed Sparse Row sparse array of dtype 'int8'
+        with 24 stored elements and shape (6, 6)>
+    >>> lap.toarray()
+        array([[-4,  1,  1,  2,  0,  0],
+               [ 1, -4,  1,  0,  2,  0],
+               [ 1,  1, -4,  0,  0,  2],
+               [ 2,  0,  0, -4,  1,  1],
+               [ 0,  2,  0,  1, -4,  1],
+               [ 0,  0,  2,  1,  1, -4]], dtype=int8)
+    >>> np.array_equal(lap.matmat(np.eye(n)), lap.toarray())
+    True
+    >>> np.array_equal(lap.tosparse().toarray(), lap.toarray())
+    True
+    >>> lap.eigenvalues()
+    array([-7., -7., -4., -3., -3.,  0.])
+    >>> eigvals = eigvalsh(lap.toarray().astype(np.float64))
+    >>> np.allclose(lap.eigenvalues(), eigvals)
+    True
+    >>> np.allclose(lap.toarray() @ lap.eigenvectors(),
+    ...             lap.eigenvectors() @ np.diag(lap.eigenvalues()))
+    True
+
+    and with ``'neumann'``
+
+    >>> lap = LaplacianNd(grid_shape, boundary_conditions='neumann')
+    >>> lap.tosparse()
+    <Compressed Sparse Row sparse array of dtype 'int8'
+        with 20 stored elements and shape (6, 6)>
+    >>> lap.toarray()
+    array([[-2,  1,  0,  1,  0,  0],
+           [ 1, -3,  1,  0,  1,  0],
+           [ 0,  1, -2,  0,  0,  1],
+           [ 1,  0,  0, -2,  1,  0],
+           [ 0,  1,  0,  1, -3,  1],
+           [ 0,  0,  1,  0,  1, -2]], dtype=int8)
+    >>> np.array_equal(lap.matmat(np.eye(n)), lap.toarray())
+    True
+    >>> np.array_equal(lap.tosparse().toarray(), lap.toarray())
+    True
+    >>> lap.eigenvalues()
+    array([-5., -3., -3., -2., -1.,  0.])
+    >>> eigvals = eigvalsh(lap.toarray().astype(np.float64))
+    >>> np.allclose(lap.eigenvalues(), eigvals)
+    True
+    >>> np.allclose(lap.toarray() @ lap.eigenvectors(),
+    ...             lap.eigenvectors() @ np.diag(lap.eigenvalues()))
+    True
+
+    """
+
+    def __init__(self, grid_shape, *,
+                 boundary_conditions='neumann',
+                 dtype=np.int8):
+
+        if boundary_conditions not in ('dirichlet', 'neumann', 'periodic'):
+            raise ValueError(
+                f"Unknown value {boundary_conditions!r} is given for "
+                "'boundary_conditions' parameter. The valid options are "
+                "'dirichlet', 'periodic', and 'neumann' (default)."
+            )
+
+        self.grid_shape = grid_shape
+        self.boundary_conditions = boundary_conditions
+        # LaplacianNd folds all dimensions in `grid_shape` into a single one
+        N = np.prod(grid_shape)
+        super().__init__(dtype=dtype, shape=(N, N))
+
+    def _eigenvalue_ordering(self, m):
+        """Compute `m` largest eigenvalues in each of the ``N`` directions,
+        i.e., up to ``m * N`` total, order them and return `m` largest.
+        """
+        grid_shape = self.grid_shape
+        if m is None:
+            indices = np.indices(grid_shape)
+            Leig = np.zeros(grid_shape)
+        else:
+            grid_shape_min = min(grid_shape,
+                                 tuple(np.ones_like(grid_shape) * m))
+            indices = np.indices(grid_shape_min)
+            Leig = np.zeros(grid_shape_min)
+
+        for j, n in zip(indices, grid_shape):
+            if self.boundary_conditions == 'dirichlet':
+                Leig += -4 * np.sin(np.pi * (j + 1) / (2 * (n + 1))) ** 2
+            elif self.boundary_conditions == 'neumann':
+                Leig += -4 * np.sin(np.pi * j / (2 * n)) ** 2
+            else:  # boundary_conditions == 'periodic'
+                Leig += -4 * np.sin(np.pi * np.floor((j + 1) / 2) / n) ** 2
+
+        Leig_ravel = Leig.ravel()
+        ind = np.argsort(Leig_ravel)
+        eigenvalues = Leig_ravel[ind]
+        if m is not None:
+            eigenvalues = eigenvalues[-m:]
+            ind = ind[-m:]
+
+        return eigenvalues, ind
+
+    def eigenvalues(self, m=None):
+        """Return the requested number of eigenvalues.
+        
+        Parameters
+        ----------
+        m : int, optional
+            The positive number of smallest eigenvalues to return.
+            If not provided, then all eigenvalues will be returned.
+            
+        Returns
+        -------
+        eigenvalues : float array
+            The requested `m` smallest or all eigenvalues, in ascending order.
+        """
+        eigenvalues, _ = self._eigenvalue_ordering(m)
+        return eigenvalues
+
+    def _ev1d(self, j, n):
+        """Return 1 eigenvector in 1d with index `j`
+        and number of grid points `n` where ``j < n``. 
+        """
+        if self.boundary_conditions == 'dirichlet':
+            i = np.pi * (np.arange(n) + 1) / (n + 1)
+            ev = np.sqrt(2. / (n + 1.)) * np.sin(i * (j + 1))
+        elif self.boundary_conditions == 'neumann':
+            i = np.pi * (np.arange(n) + 0.5) / n
+            ev = np.sqrt((1. if j == 0 else 2.) / n) * np.cos(i * j)
+        else:  # boundary_conditions == 'periodic'
+            if j == 0:
+                ev = np.sqrt(1. / n) * np.ones(n)
+            elif j + 1 == n and n % 2 == 0:
+                ev = np.sqrt(1. / n) * np.tile([1, -1], n//2)
+            else:
+                i = 2. * np.pi * (np.arange(n) + 0.5) / n
+                ev = np.sqrt(2. / n) * np.cos(i * np.floor((j + 1) / 2))
+        # make small values exact zeros correcting round-off errors
+        # due to symmetry of eigenvectors the exact 0. is correct 
+        ev[np.abs(ev) < np.finfo(np.float64).eps] = 0.
+        return ev
+
+    def _one_eve(self, k):
+        """Return 1 eigenvector in Nd with multi-index `j`
+        as a tensor product of the corresponding 1d eigenvectors. 
+        """
+        phi = [self._ev1d(j, n) for j, n in zip(k, self.grid_shape)]
+        result = phi[0]
+        for phi in phi[1:]:
+            result = np.tensordot(result, phi, axes=0)
+        return np.asarray(result).ravel()
+
+    def eigenvectors(self, m=None):
+        """Return the requested number of eigenvectors for ordered eigenvalues.
+        
+        Parameters
+        ----------
+        m : int, optional
+            The positive number of eigenvectors to return. If not provided,
+            then all eigenvectors will be returned.
+            
+        Returns
+        -------
+        eigenvectors : float array
+            An array with columns made of the requested `m` or all eigenvectors.
+            The columns are ordered according to the `m` ordered eigenvalues. 
+        """
+        _, ind = self._eigenvalue_ordering(m)
+        if m is None:
+            grid_shape_min = self.grid_shape
+        else:
+            grid_shape_min = min(self.grid_shape,
+                                tuple(np.ones_like(self.grid_shape) * m))
+
+        N_indices = np.unravel_index(ind, grid_shape_min)
+        N_indices = [tuple(x) for x in zip(*N_indices)]
+        eigenvectors_list = [self._one_eve(k) for k in N_indices]
+        return np.column_stack(eigenvectors_list)
+
+    def toarray(self):
+        """
+        Converts the Laplacian data to a dense array.
+
+        Returns
+        -------
+        L : ndarray
+            The shape is ``(N, N)`` where ``N = np.prod(grid_shape)``.
+
+        """
+        grid_shape = self.grid_shape
+        n = np.prod(grid_shape)
+        L = np.zeros([n, n], dtype=np.int8)
+        # Scratch arrays
+        L_i = np.empty_like(L)
+        Ltemp = np.empty_like(L)
+
+        for ind, dim in enumerate(grid_shape):
+            # Start zeroing out L_i
+            L_i[:] = 0
+            # Allocate the top left corner with the kernel of L_i
+            # Einsum returns writable view of arrays
+            np.einsum("ii->i", L_i[:dim, :dim])[:] = -2
+            np.einsum("ii->i", L_i[: dim - 1, 1:dim])[:] = 1
+            np.einsum("ii->i", L_i[1:dim, : dim - 1])[:] = 1
+
+            if self.boundary_conditions == 'neumann':
+                L_i[0, 0] = -1
+                L_i[dim - 1, dim - 1] = -1
+            elif self.boundary_conditions == 'periodic':
+                if dim > 1:
+                    L_i[0, dim - 1] += 1
+                    L_i[dim - 1, 0] += 1
+                else:
+                    L_i[0, 0] += 1
+
+            # kron is too slow for large matrices hence the next two tricks
+            # 1- kron(eye, mat) is block_diag(mat, mat, ...)
+            # 2- kron(mat, eye) can be performed by 4d stride trick
+
+            # 1-
+            new_dim = dim
+            # for block_diag we tile the top left portion on the diagonal
+            if ind > 0:
+                tiles = np.prod(grid_shape[:ind])
+                for j in range(1, tiles):
+                    L_i[j*dim:(j+1)*dim, j*dim:(j+1)*dim] = L_i[:dim, :dim]
+                    new_dim += dim
+            # 2-
+            # we need the keep L_i, but reset the array
+            Ltemp[:new_dim, :new_dim] = L_i[:new_dim, :new_dim]
+            tiles = int(np.prod(grid_shape[ind+1:]))
+            # Zero out the top left, the rest is already 0
+            L_i[:new_dim, :new_dim] = 0
+            idx = [x for x in range(tiles)]
+            L_i.reshape(
+                (new_dim, tiles,
+                 new_dim, tiles)
+                )[:, idx, :, idx] = Ltemp[:new_dim, :new_dim]
+
+            L += L_i
+
+        return L.astype(self.dtype)
+
+    def tosparse(self):
+        """
+        Constructs a sparse array from the Laplacian data. The returned sparse
+        array format is dependent on the selected boundary conditions.
+
+        Returns
+        -------
+        L : scipy.sparse.sparray
+            The shape is ``(N, N)`` where ``N = np.prod(grid_shape)``.
+
+        """
+        N = len(self.grid_shape)
+        p = np.prod(self.grid_shape)
+        L = dia_array((p, p), dtype=np.int8)
+
+        for i in range(N):
+            dim = self.grid_shape[i]
+            data = np.ones([3, dim], dtype=np.int8)
+            data[1, :] *= -2
+
+            if self.boundary_conditions == 'neumann':
+                data[1, 0] = -1
+                data[1, -1] = -1
+
+            L_i = dia_array((data, [-1, 0, 1]), shape=(dim, dim),
+                            dtype=np.int8
+                            )
+
+            if self.boundary_conditions == 'periodic':
+                t = dia_array((dim, dim), dtype=np.int8)
+                t.setdiag([1], k=-dim+1)
+                t.setdiag([1], k=dim-1)
+                L_i += t
+
+            for j in range(i):
+                L_i = kron(eye(self.grid_shape[j], dtype=np.int8), L_i)
+            for j in range(i + 1, N):
+                L_i = kron(L_i, eye(self.grid_shape[j], dtype=np.int8))
+            L += L_i
+        return L.astype(self.dtype)
+
+    def _matvec(self, x):
+        grid_shape = self.grid_shape
+        N = len(grid_shape)
+        X = x.reshape(grid_shape + (-1,))
+        Y = -2 * N * X
+        for i in range(N):
+            Y += np.roll(X, 1, axis=i)
+            Y += np.roll(X, -1, axis=i)
+            if self.boundary_conditions in ('neumann', 'dirichlet'):
+                Y[(slice(None),)*i + (0,) + (slice(None),)*(N-i-1)
+                  ] -= np.roll(X, 1, axis=i)[
+                    (slice(None),) * i + (0,) + (slice(None),) * (N-i-1)
+                ]
+                Y[
+                    (slice(None),) * i + (-1,) + (slice(None),) * (N-i-1)
+                ] -= np.roll(X, -1, axis=i)[
+                    (slice(None),) * i + (-1,) + (slice(None),) * (N-i-1)
+                ]
+
+                if self.boundary_conditions == 'neumann':
+                    Y[
+                        (slice(None),) * i + (0,) + (slice(None),) * (N-i-1)
+                    ] += np.roll(X, 0, axis=i)[
+                        (slice(None),) * i + (0,) + (slice(None),) * (N-i-1)
+                    ]
+                    Y[
+                        (slice(None),) * i + (-1,) + (slice(None),) * (N-i-1)
+                    ] += np.roll(X, 0, axis=i)[
+                        (slice(None),) * i + (-1,) + (slice(None),) * (N-i-1)
+                    ]
+
+        return Y.reshape(-1, X.shape[-1])
+
+    def _matmat(self, x):
+        return self._matvec(x)
+
+    def _adjoint(self):
+        return self
+
+    def _transpose(self):
+        return self
+
+
+class Sakurai(LinearOperator):
+    """
+    Construct a Sakurai matrix in various formats and its eigenvalues.
+
+    Constructs the "Sakurai" matrix motivated by reference [1]_:
+    square real symmetric positive definite and 5-diagonal
+    with the main diagonal ``[5, 6, 6, ..., 6, 6, 5], the ``+1`` and ``-1``
+    diagonals filled with ``-4``, and the ``+2`` and ``-2`` diagonals
+    made of ``1``. Its eigenvalues are analytically known to be
+    ``16. * np.power(np.cos(0.5 * k * np.pi / (n + 1)), 4)``.
+    The matrix gets ill-conditioned with its size growing.
+    It is useful for testing and benchmarking sparse eigenvalue solvers
+    especially those taking advantage of its banded 5-diagonal structure.
+    See the notes below for details.
+
+    Parameters
+    ----------
+    n : int
+        The size of the matrix.
+    dtype : dtype
+        Numerical type of the array. Default is ``np.int8``.
+
+    Methods
+    -------
+    toarray()
+        Construct a dense array from Laplacian data
+    tosparse()
+        Construct a sparse array from Laplacian data
+    tobanded()
+        The Sakurai matrix in the format for banded symmetric matrices,
+        i.e., (3, n) ndarray with 3 upper diagonals
+        placing the main diagonal at the bottom.
+    eigenvalues
+        All eigenvalues of the Sakurai matrix ordered ascending.
+
+    Notes
+    -----
+    Reference [1]_ introduces a generalized eigenproblem for the matrix pair
+    `A` and `B` where `A` is the identity so we turn it into an eigenproblem
+    just for the matrix `B` that this function outputs in various formats
+    together with its eigenvalues.
+    
+    .. versionadded:: 1.12.0
+
+    References
+    ----------
+    .. [1] T. Sakurai, H. Tadano, Y. Inadomi, and U. Nagashima,
+       "A moment-based method for large-scale generalized
+       eigenvalue problems",
+       Appl. Num. Anal. Comp. Math. Vol. 1 No. 2 (2004).
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg._special_sparse_arrays import Sakurai
+    >>> from scipy.linalg import eig_banded
+    >>> n = 6
+    >>> sak = Sakurai(n)
+
+    Since all matrix entries are small integers, ``'int8'`` is
+    the default dtype for storing matrix representations.
+
+    >>> sak.toarray()
+    array([[ 5, -4,  1,  0,  0,  0],
+           [-4,  6, -4,  1,  0,  0],
+           [ 1, -4,  6, -4,  1,  0],
+           [ 0,  1, -4,  6, -4,  1],
+           [ 0,  0,  1, -4,  6, -4],
+           [ 0,  0,  0,  1, -4,  5]], dtype=int8)
+    >>> sak.tobanded()
+    array([[ 1,  1,  1,  1,  1,  1],
+           [-4, -4, -4, -4, -4, -4],
+           [ 5,  6,  6,  6,  6,  5]], dtype=int8)
+    >>> sak.tosparse()
+    <DIAgonal sparse array of dtype 'int8'
+        with 24 stored elements (5 diagonals) and shape (6, 6)>
+    >>> np.array_equal(sak.dot(np.eye(n)), sak.tosparse().toarray())
+    True
+    >>> sak.eigenvalues()
+    array([0.03922866, 0.56703972, 2.41789479, 5.97822974,
+           10.54287655, 14.45473055])
+    >>> sak.eigenvalues(2)
+    array([0.03922866, 0.56703972])
+
+    The banded form can be used in scipy functions for banded matrices, e.g.,
+
+    >>> e = eig_banded(sak.tobanded(), eigvals_only=True)
+    >>> np.allclose(sak.eigenvalues, e, atol= n * n * n * np.finfo(float).eps)
+    True
+
+    """
+    def __init__(self, n, dtype=np.int8):
+        self.n = n
+        self.dtype = dtype
+        shape = (n, n)
+        super().__init__(dtype, shape)
+
+    def eigenvalues(self, m=None):
+        """Return the requested number of eigenvalues.
+        
+        Parameters
+        ----------
+        m : int, optional
+            The positive number of smallest eigenvalues to return.
+            If not provided, then all eigenvalues will be returned.
+            
+        Returns
+        -------
+        eigenvalues : `np.float64` array
+            The requested `m` smallest or all eigenvalues, in ascending order.
+        """
+        if m is None:
+            m = self.n
+        k = np.arange(self.n + 1 -m, self.n + 1)
+        return np.flip(16. * np.power(np.cos(0.5 * k * np.pi / (self.n + 1)), 4))
+
+    def tobanded(self):
+        """
+        Construct the Sakurai matrix as a banded array.
+        """
+        d0 = np.r_[5, 6 * np.ones(self.n - 2, dtype=self.dtype), 5]
+        d1 = -4 * np.ones(self.n, dtype=self.dtype)
+        d2 = np.ones(self.n, dtype=self.dtype)
+        return np.array([d2, d1, d0]).astype(self.dtype)
+
+    def tosparse(self):
+        """
+        Construct the Sakurai matrix is a sparse format.
+        """
+        from scipy.sparse import spdiags
+        d = self.tobanded()
+        # the banded format has the main diagonal at the bottom
+        # `spdiags` has no `dtype` parameter so inherits dtype from banded
+        return spdiags([d[0], d[1], d[2], d[1], d[0]], [-2, -1, 0, 1, 2],
+                       self.n, self.n)
+
+    def toarray(self):
+        return self.tosparse().toarray()
+    
+    def _matvec(self, x):
+        """
+        Construct matrix-free callable banded-matrix-vector multiplication by
+        the Sakurai matrix without constructing or storing the matrix itself
+        using the knowledge of its entries and the 5-diagonal format.
+        """
+        x = x.reshape(self.n, -1)
+        result_dtype = np.promote_types(x.dtype, self.dtype)
+        sx = np.zeros_like(x, dtype=result_dtype)
+        sx[0, :] = 5 * x[0, :] - 4 * x[1, :] + x[2, :]
+        sx[-1, :] = 5 * x[-1, :] - 4 * x[-2, :] + x[-3, :]
+        sx[1: -1, :] = (6 * x[1: -1, :] - 4 * (x[:-2, :] + x[2:, :])
+                      + np.pad(x[:-3, :], ((1, 0), (0, 0)))
+                      + np.pad(x[3:, :], ((0, 1), (0, 0))))
+        return sx
+
+    def _matmat(self, x):
+        """
+        Construct matrix-free callable matrix-matrix multiplication by
+        the Sakurai matrix without constructing or storing the matrix itself
+        by reusing the ``_matvec(x)`` that supports both 1D and 2D arrays ``x``.
+        """        
+        return self._matvec(x)
+
+    def _adjoint(self):
+        return self
+
+    def _transpose(self):
+        return self
+
+
+class MikotaM(LinearOperator):
+    """
+    Construct a mass matrix in various formats of Mikota pair.
+
+    The mass matrix `M` is square real diagonal
+    positive definite with entries that are reciprocal to integers.
+
+    Parameters
+    ----------
+    shape : tuple of int
+        The shape of the matrix.
+    dtype : dtype
+        Numerical type of the array. Default is ``np.float64``.
+
+    Methods
+    -------
+    toarray()
+        Construct a dense array from Mikota data
+    tosparse()
+        Construct a sparse array from Mikota data
+    tobanded()
+        The format for banded symmetric matrices,
+        i.e., (1, n) ndarray with the main diagonal.
+    """
+    def __init__(self, shape, dtype=np.float64):
+        self.shape = shape
+        self.dtype = dtype
+        super().__init__(dtype, shape)
+
+    def _diag(self):
+        # The matrix is constructed from its diagonal 1 / [1, ..., N+1];
+        # compute in a function to avoid duplicated code & storage footprint
+        return (1. / np.arange(1, self.shape[0] + 1)).astype(self.dtype)
+
+    def tobanded(self):
+        return self._diag()
+
+    def tosparse(self):
+        from scipy.sparse import diags
+        return diags([self._diag()], [0], shape=self.shape, dtype=self.dtype)
+
+    def toarray(self):
+        return np.diag(self._diag()).astype(self.dtype)
+
+    def _matvec(self, x):
+        """
+        Construct matrix-free callable banded-matrix-vector multiplication by
+        the Mikota mass matrix without constructing or storing the matrix itself
+        using the knowledge of its entries and the diagonal format.
+        """
+        x = x.reshape(self.shape[0], -1)
+        return self._diag()[:, np.newaxis] * x
+
+    def _matmat(self, x):
+        """
+        Construct matrix-free callable matrix-matrix multiplication by
+        the Mikota mass matrix without constructing or storing the matrix itself
+        by reusing the ``_matvec(x)`` that supports both 1D and 2D arrays ``x``.
+        """     
+        return self._matvec(x)
+
+    def _adjoint(self):
+        return self
+
+    def _transpose(self):
+        return self
+
+
+class MikotaK(LinearOperator):
+    """
+    Construct a stiffness matrix in various formats of Mikota pair.
+
+    The stiffness matrix `K` is square real tri-diagonal symmetric
+    positive definite with integer entries. 
+
+    Parameters
+    ----------
+    shape : tuple of int
+        The shape of the matrix.
+    dtype : dtype
+        Numerical type of the array. Default is ``np.int32``.
+
+    Methods
+    -------
+    toarray()
+        Construct a dense array from Mikota data
+    tosparse()
+        Construct a sparse array from Mikota data
+    tobanded()
+        The format for banded symmetric matrices,
+        i.e., (2, n) ndarray with 2 upper diagonals
+        placing the main diagonal at the bottom.
+    """
+    def __init__(self, shape, dtype=np.int32):
+        self.shape = shape
+        self.dtype = dtype
+        super().__init__(dtype, shape)
+        # The matrix is constructed from its diagonals;
+        # we precompute these to avoid duplicating the computation
+        n = shape[0]
+        self._diag0 = np.arange(2 * n - 1, 0, -2, dtype=self.dtype)
+        self._diag1 = - np.arange(n - 1, 0, -1, dtype=self.dtype)
+
+    def tobanded(self):
+        return np.array([np.pad(self._diag1, (1, 0), 'constant'), self._diag0])
+
+    def tosparse(self):
+        from scipy.sparse import diags
+        return diags([self._diag1, self._diag0, self._diag1], [-1, 0, 1],
+                     shape=self.shape, dtype=self.dtype)
+
+    def toarray(self):
+        return self.tosparse().toarray()
+
+    def _matvec(self, x):
+        """
+        Construct matrix-free callable banded-matrix-vector multiplication by
+        the Mikota stiffness matrix without constructing or storing the matrix
+        itself using the knowledge of its entries and the 3-diagonal format.
+        """
+        x = x.reshape(self.shape[0], -1)
+        result_dtype = np.promote_types(x.dtype, self.dtype)
+        kx = np.zeros_like(x, dtype=result_dtype)
+        d1 = self._diag1
+        d0 = self._diag0
+        kx[0, :] = d0[0] * x[0, :] + d1[0] * x[1, :]
+        kx[-1, :] = d1[-1] * x[-2, :] + d0[-1] * x[-1, :]
+        kx[1: -1, :] = (d1[:-1, None] * x[: -2, :]
+                        + d0[1: -1, None] * x[1: -1, :]
+                        + d1[1:, None] * x[2:, :])
+        return kx
+
+    def _matmat(self, x):
+        """
+        Construct matrix-free callable matrix-matrix multiplication by
+        the Stiffness mass matrix without constructing or storing the matrix itself
+        by reusing the ``_matvec(x)`` that supports both 1D and 2D arrays ``x``.
+        """  
+        return self._matvec(x)
+
+    def _adjoint(self):
+        return self
+
+    def _transpose(self):
+        return self
+
+
+class MikotaPair:
+    """
+    Construct the Mikota pair of matrices in various formats and
+    eigenvalues of the generalized eigenproblem with them.
+
+    The Mikota pair of matrices [1, 2]_ models a vibration problem
+    of a linear mass-spring system with the ends attached where
+    the stiffness of the springs and the masses increase along
+    the system length such that vibration frequencies are subsequent
+    integers 1, 2, ..., `n` where `n` is the number of the masses. Thus,
+    eigenvalues of the generalized eigenvalue problem for
+    the matrix pair `K` and `M` where `K` is the system stiffness matrix
+    and `M` is the system mass matrix are the squares of the integers,
+    i.e., 1, 4, 9, ..., ``n * n``.
+
+    The stiffness matrix `K` is square real tri-diagonal symmetric
+    positive definite. The mass matrix `M` is diagonal with diagonal
+    entries 1, 1/2, 1/3, ...., ``1/n``. Both matrices get
+    ill-conditioned with `n` growing.
+
+    Parameters
+    ----------
+    n : int
+        The size of the matrices of the Mikota pair.
+    dtype : dtype
+        Numerical type of the array. Default is ``np.float64``.
+
+    Attributes
+    ----------
+    eigenvalues : 1D ndarray, ``np.uint64``
+        All eigenvalues of the Mikota pair ordered ascending.
+
+    Methods
+    -------
+    MikotaK()
+        A `LinearOperator` custom object for the stiffness matrix.
+    MikotaM()
+        A `LinearOperator` custom object for the mass matrix.
+    
+    .. versionadded:: 1.12.0
+
+    References
+    ----------
+    .. [1] J. Mikota, "Frequency tuning of chain structure multibody oscillators
+       to place the natural frequencies at omega1 and N-1 integer multiples
+       omega2,..., omegaN", Z. Angew. Math. Mech. 81 (2001), S2, S201-S202.
+       Appl. Num. Anal. Comp. Math. Vol. 1 No. 2 (2004).
+    .. [2] Peter C. Muller and Metin Gurgoze,
+       "Natural frequencies of a multi-degree-of-freedom vibration system",
+       Proc. Appl. Math. Mech. 6, 319-320 (2006).
+       http://dx.doi.org/10.1002/pamm.200610141.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.sparse.linalg._special_sparse_arrays import MikotaPair
+    >>> n = 6
+    >>> mik = MikotaPair(n)
+    >>> mik_k = mik.k
+    >>> mik_m = mik.m
+    >>> mik_k.toarray()
+    array([[11., -5.,  0.,  0.,  0.,  0.],
+           [-5.,  9., -4.,  0.,  0.,  0.],
+           [ 0., -4.,  7., -3.,  0.,  0.],
+           [ 0.,  0., -3.,  5., -2.,  0.],
+           [ 0.,  0.,  0., -2.,  3., -1.],
+           [ 0.,  0.,  0.,  0., -1.,  1.]])
+    >>> mik_k.tobanded()
+    array([[ 0., -5., -4., -3., -2., -1.],
+           [11.,  9.,  7.,  5.,  3.,  1.]])
+    >>> mik_m.tobanded()
+    array([1.        , 0.5       , 0.33333333, 0.25      , 0.2       ,
+        0.16666667])
+    >>> mik_k.tosparse()
+    <DIAgonal sparse array of dtype 'float64'
+        with 20 stored elements (3 diagonals) and shape (6, 6)>
+    >>> mik_m.tosparse()
+    <DIAgonal sparse array of dtype 'float64'
+        with 6 stored elements (1 diagonals) and shape (6, 6)>
+    >>> np.array_equal(mik_k(np.eye(n)), mik_k.toarray())
+    True
+    >>> np.array_equal(mik_m(np.eye(n)), mik_m.toarray())
+    True
+    >>> mik.eigenvalues()
+    array([ 1,  4,  9, 16, 25, 36])  
+    >>> mik.eigenvalues(2)
+    array([ 1,  4])
+
+    """
+    def __init__(self, n, dtype=np.float64):
+        self.n = n
+        self.dtype = dtype
+        self.shape = (n, n)
+        self.m = MikotaM(self.shape, self.dtype)
+        self.k = MikotaK(self.shape, self.dtype)
+
+    def eigenvalues(self, m=None):
+        """Return the requested number of eigenvalues.
+        
+        Parameters
+        ----------
+        m : int, optional
+            The positive number of smallest eigenvalues to return.
+            If not provided, then all eigenvalues will be returned.
+            
+        Returns
+        -------
+        eigenvalues : `np.uint64` array
+            The requested `m` smallest or all eigenvalues, in ascending order.
+        """
+        if m is None:
+            m = self.n
+        arange_plus1 = np.arange(1, m + 1, dtype=np.uint64)
+        return arange_plus1 * arange_plus1

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/_svdp.py

@@ -0,0 +1,309 @@
+"""
+Python wrapper for PROPACK
+--------------------------
+
+PROPACK is a collection of Fortran routines for iterative computation
+of partial SVDs of large matrices or linear operators.
+
+Based on BSD licensed pypropack project:
+  http://github.com/jakevdp/pypropack
+  Author: Jake Vanderplas <vanderplas@astro.washington.edu>
+
+PROPACK source is BSD licensed, and available at
+  http://soi.stanford.edu/~rmunk/PROPACK/
+"""
+
+__all__ = ['_svdp']
+
+import numpy as np
+
+from scipy.sparse.linalg import aslinearoperator
+from scipy.linalg import LinAlgError
+
+from ._propack import _spropack  # type: ignore[attr-defined]
+from ._propack import _dpropack  # type: ignore[attr-defined]
+from ._propack import _cpropack  # type: ignore[attr-defined]
+from ._propack import _zpropack  # type: ignore[attr-defined]
+
+
+_lansvd_dict = {
+    'f': _spropack.slansvd,
+    'd': _dpropack.dlansvd,
+    'F': _cpropack.clansvd,
+    'D': _zpropack.zlansvd,
+}
+
+
+_lansvd_irl_dict = {
+    'f': _spropack.slansvd_irl,
+    'd': _dpropack.dlansvd_irl,
+    'F': _cpropack.clansvd_irl,
+    'D': _zpropack.zlansvd_irl,
+}
+
+_which_converter = {
+    'LM': 'L',
+    'SM': 'S',
+}
+
+
+class _AProd:
+    """
+    Wrapper class for linear operator
+
+    The call signature of the __call__ method matches the callback of
+    the PROPACK routines.
+    """
+    def __init__(self, A):
+        try:
+            self.A = aslinearoperator(A)
+        except TypeError:
+            self.A = aslinearoperator(np.asarray(A))
+
+    def __call__(self, transa, m, n, x, y, sparm, iparm):
+        if transa == 'n':
+            y[:] = self.A.matvec(x)
+        else:
+            y[:] = self.A.rmatvec(x)
+
+    @property
+    def shape(self):
+        return self.A.shape
+
+    @property
+    def dtype(self):
+        try:
+            return self.A.dtype
+        except AttributeError:
+            return self.A.matvec(np.zeros(self.A.shape[1])).dtype
+
+
+def _svdp(A, k, which='LM', irl_mode=True, kmax=None,
+          compute_u=True, compute_v=True, v0=None, full_output=False, tol=0,
+          delta=None, eta=None, anorm=0, cgs=False, elr=True,
+          min_relgap=0.002, shifts=None, maxiter=None, rng=None):
+    """
+    Compute the singular value decomposition of a linear operator using PROPACK
+
+    Parameters
+    ----------
+    A : array_like, sparse matrix, or LinearOperator
+        Operator for which SVD will be computed.  If `A` is a LinearOperator
+        object, it must define both ``matvec`` and ``rmatvec`` methods.
+    k : int
+        Number of singular values/vectors to compute
+    which : {"LM", "SM"}
+        Which singular triplets to compute:
+        - 'LM': compute triplets corresponding to the `k` largest singular
+                values
+        - 'SM': compute triplets corresponding to the `k` smallest singular
+                values
+        `which='SM'` requires `irl_mode=True`.  Computes largest singular
+        values by default.
+    irl_mode : bool, optional
+        If `True`, then compute SVD using IRL (implicitly restarted Lanczos)
+        mode.  Default is `True`.
+    kmax : int, optional
+        Maximal number of iterations / maximal dimension of the Krylov
+        subspace. Default is ``10 * k``.
+    compute_u : bool, optional
+        If `True` (default) then compute left singular vectors, `u`.
+    compute_v : bool, optional
+        If `True` (default) then compute right singular vectors, `v`.
+    tol : float, optional
+        The desired relative accuracy for computed singular values.
+        If not specified, it will be set based on machine precision.
+    v0 : array_like, optional
+        Starting vector for iterations: must be of length ``A.shape[0]``.
+        If not specified, PROPACK will generate a starting vector.
+    full_output : bool, optional
+        If `True`, then return sigma_bound.  Default is `False`.
+    delta : float, optional
+        Level of orthogonality to maintain between Lanczos vectors.
+        Default is set based on machine precision.
+    eta : float, optional
+        Orthogonality cutoff.  During reorthogonalization, vectors with
+        component larger than `eta` along the Lanczos vector will be purged.
+        Default is set based on machine precision.
+    anorm : float, optional
+        Estimate of ``||A||``.  Default is ``0``.
+    cgs : bool, optional
+        If `True`, reorthogonalization is done using classical Gram-Schmidt.
+        If `False` (default), it is done using modified Gram-Schmidt.
+    elr : bool, optional
+        If `True` (default), then extended local orthogonality is enforced
+        when obtaining singular vectors.
+    min_relgap : float, optional
+        The smallest relative gap allowed between any shift in IRL mode.
+        Default is ``0.001``.  Accessed only if ``irl_mode=True``.
+    shifts : int, optional
+        Number of shifts per restart in IRL mode.  Default is determined
+        to satisfy ``k <= min(kmax-shifts, m, n)``.  Must be
+        >= 0, but choosing 0 might lead to performance degradation.
+        Accessed only if ``irl_mode=True``.
+    maxiter : int, optional
+        Maximum number of restarts in IRL mode.  Default is ``1000``.
+        Accessed only if ``irl_mode=True``.
+    rng : `numpy.random.Generator`, optional
+        Pseudorandom number generator state. When `rng` is None, a new
+        `numpy.random.Generator` is created using entropy from the
+        operating system. Types other than `numpy.random.Generator` are
+        passed to `numpy.random.default_rng` to instantiate a ``Generator``.
+
+    Returns
+    -------
+    u : ndarray
+        The `k` largest (``which="LM"``) or smallest (``which="SM"``) left
+        singular vectors, ``shape == (A.shape[0], 3)``, returned only if
+        ``compute_u=True``.
+    sigma : ndarray
+        The top `k` singular values, ``shape == (k,)``
+    vt : ndarray
+        The `k` largest (``which="LM"``) or smallest (``which="SM"``) right
+        singular vectors, ``shape == (3, A.shape[1])``, returned only if
+        ``compute_v=True``.
+    sigma_bound : ndarray
+        the error bounds on the singular values sigma, returned only if
+        ``full_output=True``.
+
+    """
+    if rng is None:
+        raise ValueError("`rng` must be a normalized numpy.random.Generator instance")
+
+    which = which.upper()
+    if which not in {'LM', 'SM'}:
+        raise ValueError("`which` must be either 'LM' or 'SM'")
+    if not irl_mode and which == 'SM':
+        raise ValueError("`which`='SM' requires irl_mode=True")
+
+    aprod = _AProd(A)
+    typ = aprod.dtype.char
+
+    try:
+        lansvd_irl = _lansvd_irl_dict[typ]
+        lansvd = _lansvd_dict[typ]
+    except KeyError:
+        # work with non-supported types using native system precision
+        if np.iscomplexobj(np.empty(0, dtype=typ)):
+            typ = np.dtype(complex).char
+        else:
+            typ = np.dtype(float).char
+        lansvd_irl = _lansvd_irl_dict[typ]
+        lansvd = _lansvd_dict[typ]
+
+    m, n = aprod.shape
+    if (k < 1) or (k > min(m, n)):
+        raise ValueError("k must be positive and not greater than m or n")
+
+    if kmax is None:
+        kmax = 10*k
+    if maxiter is None:
+        maxiter = 1000
+
+    # guard against unnecessarily large kmax
+    kmax = min(m + 1, n + 1, kmax)
+    if kmax < k:
+        raise ValueError(
+            "kmax must be greater than or equal to k, "
+            f"but kmax ({kmax}) < k ({k})")
+
+    # convert python args to fortran args
+    jobu = 'y' if compute_u else 'n'
+    jobv = 'y' if compute_v else 'n'
+
+    # these will be the output arrays
+    u = np.zeros((m, kmax + 1), order='F', dtype=typ)
+    v = np.zeros((n, kmax), order='F', dtype=typ)
+
+    # Specify the starting vector.  if v0 is all zero, PROPACK will generate
+    # a random starting vector: the random seed cannot be controlled in that
+    # case, so we'll instead use numpy to generate a random vector
+    if v0 is None:
+        u[:, 0] = rng.uniform(size=m)
+        if np.iscomplexobj(np.empty(0, dtype=typ)):  # complex type
+            u[:, 0] += 1j * rng.uniform(size=m)
+    else:
+        try:
+            u[:, 0] = v0
+        except ValueError:
+            raise ValueError(f"v0 must be of length {m}")
+
+    # process options for the fit
+    if delta is None:
+        delta = np.sqrt(np.finfo(typ).eps)
+    if eta is None:
+        eta = np.finfo(typ).eps ** 0.75
+
+    if irl_mode:
+        doption = np.array((delta, eta, anorm, min_relgap), dtype=typ.lower())
+
+        # validate or find default shifts
+        if shifts is None:
+            shifts = kmax - k
+        if k > min(kmax - shifts, m, n):
+            raise ValueError('shifts must satisfy '
+                             'k <= min(kmax-shifts, m, n)!')
+        elif shifts < 0:
+            raise ValueError('shifts must be >= 0!')
+
+    else:
+        doption = np.array((delta, eta, anorm), dtype=typ.lower())
+
+    ioption = np.array((int(bool(cgs)), int(bool(elr))), dtype='i')
+
+    # If computing `u` or `v` (left and right singular vectors,
+    # respectively), `blocksize` controls how large a fraction of the
+    # work is done via fast BLAS level 3 operations.  A larger blocksize
+    # may lead to faster computation at the expense of greater memory
+    # consumption.  `blocksize` must be ``>= 1``.  Choosing blocksize
+    # of 16, but docs don't specify; it's almost surely a
+    # power of 2.
+    blocksize = 16
+
+    # Determine lwork & liwork:
+    # the required lengths are specified in the PROPACK documentation
+    if compute_u or compute_v:
+        lwork = m + n + 9*kmax + 5*kmax*kmax + 4 + max(
+            3*kmax*kmax + 4*kmax + 4,
+            blocksize*max(m, n))
+        liwork = 8*kmax
+    else:
+        lwork = m + n + 9*kmax + 2*kmax*kmax + 4 + max(m + n, 4*kmax + 4)
+        liwork = 2*kmax + 1
+    work = np.empty(lwork, dtype=typ.lower())
+    iwork = np.empty(liwork, dtype=np.int32)
+
+    # dummy arguments: these are passed to aprod, and not used in this wrapper
+    dparm = np.empty(1, dtype=typ.lower())
+    iparm = np.empty(1, dtype=np.int32)
+
+    if typ.isupper():
+        # PROPACK documentation is unclear on the required length of zwork.
+        # Use the same length Julia's wrapper uses
+        # see https://github.com/JuliaSmoothOptimizers/PROPACK.jl/
+        zwork = np.empty(m + n + 32*m, dtype=typ)
+        works = work, zwork, iwork
+    else:
+        works = work, iwork
+
+    if irl_mode:
+        u, sigma, bnd, v, info = lansvd_irl(_which_converter[which], jobu,
+                                            jobv, m, n, shifts, k, maxiter,
+                                            aprod, u, v, tol, *works, doption,
+                                            ioption, dparm, iparm)
+    else:
+        u, sigma, bnd, v, info = lansvd(jobu, jobv, m, n, k, aprod, u, v, tol,
+                                        *works, doption, ioption, dparm, iparm)
+
+    if info > 0:
+        raise LinAlgError(
+            f"An invariant subspace of dimension {info} was found.")
+    elif info < 0:
+        raise LinAlgError(
+            f"k={k} singular triplets did not converge within "
+            f"kmax={kmax} iterations")
+
+    # info == 0: The K largest (or smallest) singular triplets were computed
+    # successfully!
+
+    return u[:, :k], sigma, v[:, :k].conj().T, bnd

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/dsolve.py

@@ -0,0 +1,22 @@
+# This file is not meant for public use and will be removed in SciPy v2.0.0.
+# Use the `scipy.sparse.linalg` namespace for importing the functions
+# included below.
+
+from scipy._lib.deprecation import _sub_module_deprecation
+
+
+__all__ = [  # noqa: F822
+    'MatrixRankWarning', 'SuperLU', 'factorized',
+    'spilu', 'splu', 'spsolve',
+    'spsolve_triangular', 'use_solver', 'test'
+]
+
+
+def __dir__():
+    return __all__
+
+
+def __getattr__(name):
+    return _sub_module_deprecation(sub_package="sparse.linalg", module="dsolve",
+                                   private_modules=["_dsolve"], all=__all__,
+                                   attribute=name)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/eigen.py

@@ -0,0 +1,21 @@
+# This file is not meant for public use and will be removed in SciPy v2.0.0.
+# Use the `scipy.sparse.linalg` namespace for importing the functions
+# included below.
+
+from scipy._lib.deprecation import _sub_module_deprecation
+
+
+__all__ = [  # noqa: F822
+    'ArpackError', 'ArpackNoConvergence', 'ArpackError',
+    'eigs', 'eigsh', 'lobpcg', 'svds', 'test'
+]
+
+
+def __dir__():
+    return __all__
+
+
+def __getattr__(name):
+    return _sub_module_deprecation(sub_package="sparse.linalg", module="eigen",
+                                   private_modules=["_eigen"], all=__all__,
+                                   attribute=name)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/interface.py

@@ -0,0 +1,20 @@
+# This file is not meant for public use and will be removed in SciPy v2.0.0.
+# Use the `scipy.sparse.linalg` namespace for importing the functions
+# included below.
+
+from scipy._lib.deprecation import _sub_module_deprecation
+
+
+__all__ = [  # noqa: F822
+    'LinearOperator', 'aslinearoperator',
+]
+
+
+def __dir__():
+    return __all__
+
+
+def __getattr__(name):
+    return _sub_module_deprecation(sub_package="sparse.linalg", module="interface",
+                                   private_modules=["_interface"], all=__all__,
+                                   attribute=name)

miniconda3/envs/ladir/lib/python3.10/site-packages/scipy/sparse/linalg/isolve.py

@@ -0,0 +1,22 @@
+# This file is not meant for public use and will be removed in SciPy v2.0.0.
+# Use the `scipy.sparse.linalg` namespace for importing the functions
+# included below.
+
+from scipy._lib.deprecation import _sub_module_deprecation
+
+
+__all__ = [  # noqa: F822
+    'bicg', 'bicgstab', 'cg', 'cgs', 'gcrotmk', 'gmres',
+    'lgmres', 'lsmr', 'lsqr',
+    'minres', 'qmr', 'tfqmr', 'test'
+]
+
+
+def __dir__():
+    return __all__
+
+
+def __getattr__(name):
+    return _sub_module_deprecation(sub_package="sparse.linalg", module="isolve",
+                                   private_modules=["_isolve"], all=__all__,
+                                   attribute=name)