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Update dataset card with paper link, metadata, and sample usage

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Hi! I'm Niels, part of the community science team at Hugging Face.

I've noticed this dataset is part of the "PepBenchmark" project. This PR aims to improve the dataset card by:
1. Linking it to the corresponding paper on the Hugging Face Hub (https://huggingface.co/papers/2604.10531).
2. Adding the `text-classification` task category and relevant tags to the metadata.
3. Including a link to the official GitHub repository.
4. Providing a sample usage snippet found in the GitHub documentation to help users load and interact with the data using the `pepbenchmark` library.

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  1. README.md +59 -2
README.md CHANGED
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- This dataset is released for the ICLR 2026 paper “PepBenchmark: A Standardized Benchmark for Peptide Machine Learning.”
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- Additional details are available at: https://github.com/ZGCI-AI4S-Pep/PepBenchmark
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ ---
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+ task_categories:
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+ - text-classification
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+ tags:
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+ - biology
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+ - peptide
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+ - drug-discovery
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+ ---
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+
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+ This dataset is part of **PepBenchmark**, a standardized benchmark for peptide machine learning introduced in the paper [PepBenchmark: A Standardized Benchmark for Peptide Machine Learning](https://huggingface.co/papers/2604.10531).
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+
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+ PepBenchmark unifies datasets, preprocessing, and evaluation protocols for peptide drug discovery. It comprises three components:
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+ - **PepBenchData**: A well-curated collection of 29 canonical-peptide and 6 non-canonical-peptide datasets across 7 groups.
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+ - **PepBenchPipeline**: A standardized preprocessing pipeline ensuring consistent data cleaning, construction, and splitting.
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+ - **PepBenchLeaderboard**: A unified evaluation protocol and leaderboard with strong baselines across major methodological families.
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+
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+ - **GitHub Repository**: [https://github.com/ZGCI-AI4S-Pep/PepBenchmark](https://github.com/ZGCI-AI4S-Pep/PepBenchmark)
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+ - **Paper**: [https://huggingface.co/papers/2604.10531](https://huggingface.co/papers/2604.10531)
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+
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+ ## Sample Usage
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+
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+ You can use the `pepbenchmark` library to load and manage the datasets:
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+
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+ ```python
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+ from pepbenchmark.dataset_manager.single_dataset import SinglePeptideDatasetManager
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+
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+ # Initialize the manager for a specific dataset
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+ manager = SinglePeptideDatasetManager(
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+ "ace_inhibitory",
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+ official_feature_names=["fasta", "label"],
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+ dataset_dir="../PepBenchData/PepBenchData-50",
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+ )
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+
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+ # Access features
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+ sequences = manager.get_feature("fasta")
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+ labels = manager.get_feature("label")
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+
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+ # Set data splits
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+ splits = manager.set_official_split_indices(
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+ split_type="hybrid_split",
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+ fold_seed=0
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+ )
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+
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+ print(f"Train samples: {len(splits['train'])}")
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+ print(f"Validation samples: {len(splits['valid'])}")
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+ print(f"Test samples: {len(splits['test'])}")
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+ ```
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+
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+ ## Citation
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+
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+ ```bibtex
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+ @inproceedings{zhang2026pepbenchmark,
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+ title={PepBenchmark: A Standardized Benchmark for Peptide Machine Learning},
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+ author={Zhang, Jiahui and Wang, Rouyi and Zhou, Kuangqi and Xiao, Tianshu and Zhu, Lingyan and Min, Yaosen and Wang, Yang},
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+ booktitle={International Conference on Learning Representations (ICLR)},
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+ year={2026},
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+ url={https://openreview.net/forum?id=NskQgtSdll}
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+ }
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+ ```