diff --git a/pfam_gap_rates/1-cysPrx_C.gap.json b/pfam_gap_rates/1-cysPrx_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7ff275dd127d65fd0d3d81020913ec4a4258bb5
--- /dev/null
+++ b/pfam_gap_rates/1-cysPrx_C.gap.json
@@ -0,0 +1 @@
+{"family": "1-cysPrx_C", "n_seqs": 2481, "length": 42, "gap_rates": [0.25110842402257155, 0.20354695687222893, 0.041515517936316, 0.03345425231761386, 0.029423619508262798, 0.027408303103587262, 0.014913341394598953, 0.01007658202337767, 0.8057234985892785, 0.006045949214026602, 0.0032245062474808546, 0.9230149133413946, 0.0012091898428053204, 0.0, 0.0, 0.0, 0.00040306328093510683, 0.00040306328093510683, 0.032648125755743655, 0.0008061265618702137, 0.0016122531237404273, 0.002015316404675534, 0.0032245062474808546, 0.0036275695284159614, 0.004030632809351068, 0.5368802902055623, 0.547359935509875, 0.5602579604997985, 0.06892382103990327, 0.08827085852478839, 0.11003627569528417, 0.1293833131801693, 0.18178153970173316, 0.580814187827489, 0.3567110036275695, 0.3305118903667876, 0.3450221684804514, 0.38170092704554615, 0.4199919387343813, 0.49858927851672713, 0.6166868198307134, 0.8270858524788391], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/14-3-3.gap.json b/pfam_gap_rates/14-3-3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0878afddb71738a8c3424fcda6b14f6aae5e79e
--- /dev/null
+++ b/pfam_gap_rates/14-3-3.gap.json
@@ -0,0 +1 @@
+{"family": "14-3-3", "n_seqs": 1377, "length": 229, "gap_rates": [0.47785039941902685, 0.289760348583878, 0.2694262890341322, 0.2679738562091503, 0.26506899055918665, 0.26143790849673204, 0.25780682643427744, 0.2541757443718228, 0.2512708787218591, 0.25054466230936817, 0.2476397966594045, 0.2440087145969499, 0.2374727668845316, 0.2113289760348584, 0.2084241103848947, 0.20769789397240376, 0.20406681190994916, 0.19753086419753085, 0.19607843137254902, 0.1924473493100944, 0.19389978213507625, 0.19317356572258534, 0.19317356572258534, 0.19317356572258534, 0.8017429193899782, 0.9353667392883079, 0.8946986201888163, 0.7516339869281046, 0.18373275236020334, 0.17647058823529413, 0.1757443718228032, 0.17501815541031226, 0.17429193899782136, 0.17356572258533043, 0.17356572258533043, 0.17356572258533043, 0.17356572258533043, 0.17356572258533043, 0.17356572258533043, 0.17429193899782136, 0.17429193899782136, 0.17429193899782136, 0.17138707334785766, 0.17138707334785766, 0.17066085693536673, 0.17066085693536673, 0.16848220769789396, 0.1692084241103849, 0.16993464052287582, 0.1721132897603486, 0.1721132897603486, 0.1728395061728395, 0.17356572258533043, 0.17429193899782136, 0.1728395061728395, 0.1721132897603486, 0.16993464052287582, 0.1692084241103849, 0.16848220769789396, 0.16993464052287582, 0.16993464052287582, 0.17066085693536673, 0.17066085693536673, 0.16993464052287582, 0.17138707334785766, 0.17429193899782136, 0.18082788671023964, 0.19607843137254902, 0.38198983297022515, 0.4567901234567901, 0.25562817719680464, 0.20116194625998549, 0.18155410312273057, 0.17792302106027597, 0.16848220769789396, 0.1626724763979666, 0.15976761074800291, 0.1568627450980392, 0.15468409586056645, 0.1539578794480755, 0.1539578794480755, 0.1539578794480755, 0.15468409586056645, 0.15758896151053015, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.15758896151053015, 0.15831517792302105, 0.15831517792302105, 0.15904139433551198, 0.15831517792302105, 0.15904139433551198, 0.15976761074800291, 0.15613652868554828, 0.1503267973856209, 0.1532316630355846, 0.1532316630355846, 0.1539578794480755, 0.1532316630355846, 0.1539578794480755, 0.1532316630355846, 0.15177923021060277, 0.15177923021060277, 0.15177923021060277, 0.1830065359477124, 0.15904139433551198, 0.9433551198257081, 0.9310094408133623, 0.15613652868554828, 0.15177923021060277, 0.14960058097313, 0.14814814814814814, 0.14742193173565724, 0.14742193173565724, 0.14596949891067537, 0.1466957153231663, 0.14742193173565724, 0.14742193173565724, 0.14524328249818447, 0.12563543936092955, 0.12926652142338416, 0.1299927378358751, 0.1299927378358751, 0.13071895424836602, 0.12854030501089325, 0.1270878721859114, 0.1270878721859114, 0.12781408859840232, 0.12926652142338416, 0.12854030501089325, 0.1270878721859114, 0.12781408859840232, 0.15904139433551198, 0.1568627450980392, 0.14960058097313, 0.14451706608569354, 0.140159767610748, 0.13435003631082063, 0.12490922294843863, 0.12636165577342048, 0.11982570806100218, 0.11328976034858387, 0.10457516339869281, 0.09586056644880174, 0.09368191721132897, 0.09222948438634714, 0.08932461873638345, 0.08932461873638345, 0.0878721859114016, 0.09222948438634714, 0.0915032679738562, 0.09513435003631082, 0.09658678286129267, 0.09658678286129267, 0.09731299927378359, 0.17719680464778503, 0.10530137981118373, 0.10602759622367465, 0.09731299927378359, 0.09731299927378359, 0.09586056644880174, 0.09513435003631082, 0.09513435003631082, 0.0944081336238199, 0.0944081336238199, 0.0944081336238199, 0.0944081336238199, 0.09586056644880174, 0.09586056644880174, 0.09513435003631082, 0.09658678286129267, 0.09876543209876543, 0.09658678286129267, 0.09658678286129267, 0.09876543209876543, 0.09876543209876543, 0.1009440813362382, 0.10021786492374728, 0.10239651416122005, 0.10021786492374728, 0.10167029774872913, 0.1009440813362382, 0.10021786492374728, 0.1009440813362382, 0.10312273057371096, 0.10602759622367465, 0.10675381263616558, 0.10675381263616558, 0.10457516339869281, 0.10384894698620188, 0.10384894698620188, 0.10312273057371096, 0.10312273057371096, 0.11183732752360204, 0.11692084241103849, 0.12200435729847495, 0.12418300653594772, 0.12563543936092955, 0.13144517066085692, 0.1328976034858388, 0.1336238198983297, 0.14088598402323893, 0.1503267973856209, 0.14524328249818447, 0.14742193173565724, 0.14524328249818447, 0.14524328249818447, 0.14451706608569354, 0.14524328249818447, 0.14742193173565724, 0.14742193173565724, 0.14742193173565724, 0.14814814814814814, 0.14960058097313, 0.1503267973856209, 0.15105301379811184, 0.1503267973856209, 0.15105301379811184, 0.15177923021060277, 0.15177923021060277, 0.15976761074800291, 0.18155410312273057, 0.18736383442265794, 0.18809005083514888, 0.1888162672476398, 0.2018881626724764, 0.20261437908496732, 0.2440087145969499], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/2-ph_phosp.gap.json b/pfam_gap_rates/2-ph_phosp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0727ecb2772462e7e7d959c79bebac038ca113d7
--- /dev/null
+++ b/pfam_gap_rates/2-ph_phosp.gap.json
@@ -0,0 +1 @@
+{"family": "2-ph_phosp", "n_seqs": 431, "length": 247, "gap_rates": [0.9025522041763341, 0.802784222737819, 0.7470997679814385, 0.6635730858468677, 0.605568445475638, 0.5707656612529002, 0.5498839907192575, 0.5150812064965197, 0.4918793503480278, 0.4408352668213457, 0.925754060324826, 0.2737819025522042, 0.23433874709976799, 0.17633410672853828, 0.10208816705336426, 0.5777262180974478, 0.06728538283062645, 0.06264501160092807, 0.058004640371229696, 0.05336426914153132, 0.05336426914153132, 0.05336426914153132, 0.05336426914153132, 0.05336426914153132, 0.060324825986078884, 0.05336426914153132, 0.05336426914153132, 0.05336426914153132, 0.05104408352668213, 0.048723897911832945, 0.048723897911832945, 0.048723897911832945, 0.048723897911832945, 0.048723897911832945, 0.04640371229698376, 0.04640371229698376, 0.06264501160092807, 0.06960556844547564, 0.09976798143851508, 0.07424593967517401, 0.04640371229698376, 0.04640371229698376, 0.04408352668213457, 0.04408352668213457, 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\ No newline at end of file
diff --git a/pfam_gap_rates/2OG-Fe_Oxy_2.gap.json b/pfam_gap_rates/2OG-Fe_Oxy_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da2756aed31dd9c2f74b1ee2e38609e86143e32b
--- /dev/null
+++ b/pfam_gap_rates/2OG-Fe_Oxy_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/2_5_RNA_ligase2.gap.json b/pfam_gap_rates/2_5_RNA_ligase2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c967d1d17ef2ee3435047281581057a49ad8f934
--- /dev/null
+++ b/pfam_gap_rates/2_5_RNA_ligase2.gap.json
@@ -0,0 +1 @@
+{"family": "2_5_RNA_ligase2", "n_seqs": 1321, "length": 183, "gap_rates": [0.8879636638909917, 0.7827403482210447, 0.7305071915215746, 0.6858440575321726, 0.6510219530658592, 0.6184708554125662, 0.579106737320212, 0.5526116578349735, 0.4996214988644966, 0.4738834216502649, 0.4595003785011355, 0.4481453444360333, 0.43376230128690385, 0.8728236184708554, 0.9091597274791824, 0.8849356548069645, 0.8410295230885693, 0.6252838758516276, 0.4133232399697199, 0.38758516275548827, 0.3542770628311885, 0.33535200605601817, 0.3028009084027252, 0.2573807721423164, 0.9258137774413323, 0.198334595003785, 0.16956850870552612, 0.1453444360333081, 0.11203633610900833, 0.05526116578349735, 0.9265707797123391, 0.9462528387585163, 0.8819076457229371, 0.025738077214231644, 0.02498107494322483, 0.023467070401211203, 0.02195306585919758, 0.021196063588190765, 0.02195306585919758, 0.01968205904617714, 0.02195306585919758, 0.01968205904617714, 0.01968205904617714, 0.01968205904617714, 0.018925056775170326, 0.023467070401211203, 0.14155942467827404, 0.2778198334595004, 0.9197577592732779, 0.9485238455715367, 0.9432248296744891, 0.5079485238455715, 0.059046177138531414, 0.029523088569265707, 0.0174110522331567, 0.01514004542013626, 0.014383043149129448, 0.012112036336109008, 0.010598031794095382, 0.012112036336109008, 0.012112036336109008, 0.012112036336109008, 0.05980317940953823, 0.1506434519303558, 0.9432248296744891, 0.9295987887963664, 0.045420136260408785, 0.02725208175624527, 0.0174110522331567, 0.013626040878122634, 0.011355034065102196, 0.003785011355034065, 0.003028009084027252, 0.003028009084027252, 0.002271006813020439, 0.003028009084027252, 0.003028009084027252, 0.003028009084027252, 0.002271006813020439, 0.002271006813020439, 0.012112036336109008, 0.16502649507948525, 0.24299772899318697, 0.874337623012869, 0.6858440575321726, 0.1514004542013626, 0.09462528387585163, 0.06813020439061317, 0.6177138531415595, 0.004542013626040878, 0.004542013626040878, 0.003028009084027252, 0.003785011355034065, 0.003785011355034065, 0.010598031794095382, 0.9046177138531416, 0.9447388342165026, 0.6707040121120363, 0.10219530658591976, 0.03179409538228615, 0.011355034065102196, 0.006056018168054504, 0.006056018168054504, 0.006813020439061317, 0.006813020439061317, 0.005299015897047691, 0.004542013626040878, 0.005299015897047691, 0.004542013626040878, 0.006056018168054504, 0.006056018168054504, 0.006056018168054504, 0.006056018168054504, 0.006813020439061317, 0.06510219530658592, 0.022710068130204392, 0.018168054504163512, 0.01514004542013626, 0.9417108251324754, 0.02043906131718395, 0.052233156699470096, 0.08327024981074943, 0.14761544284632855, 0.25889477668433003, 0.2687358062074186, 0.7441332323996972, 0.834216502649508, 0.9371688115064345, 0.8039364118092355, 0.6585919757759273, 0.01514004542013626, 0.010598031794095382, 0.00984102952308857, 0.009084027252081756, 0.009084027252081756, 0.009084027252081756, 0.009084027252081756, 0.009084027252081756, 0.00984102952308857, 0.010598031794095382, 0.013626040878122634, 0.018925056775170326, 0.03179409538228615, 0.06661619984859955, 0.07040121120363362, 0.0757002271006813, 0.09386828160484481, 0.2036336109008327, 0.8856926570779712, 0.9258137774413323, 0.7903103709311128, 0.17638152914458743, 0.17259651778955337, 0.17183951551854657, 0.17486752460257382, 0.17713853141559424, 0.1794095382286147, 0.1809235427706283, 0.8902346707040121, 0.8516275548826646, 0.48448145344436033, 0.3270249810749432, 0.2331566994700984, 0.22861468584405753, 0.22937168811506434, 0.22558667676003027, 0.23164269492808479, 0.22785768357305072, 0.9492808478425435, 0.2392127176381529, 0.2505677517032551, 0.25208175624526874, 0.25965177895533686, 0.2664647993943982, 0.2687358062074186, 0.279333838001514, 0.2922028766086298, 0.32172596517789553, 0.380772142316427, 0.5026495079485238, 0.631339894019682, 0.7486752460257381, 0.8932626797880394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/3-dmu-9_3-mt.gap.json b/pfam_gap_rates/3-dmu-9_3-mt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fb0d522040facc27ab8d6df9553939d349564a5
--- /dev/null
+++ b/pfam_gap_rates/3-dmu-9_3-mt.gap.json
@@ -0,0 +1 @@
+{"family": "3-dmu-9_3-mt", "n_seqs": 1276, "length": 148, "gap_rates": [0.8275862068965517, 0.4952978056426332, 0.23197492163009403, 0.14576802507836992, 0.09952978056426333, 0.06974921630094044, 0.06583072100313479, 0.04623824451410658, 0.04467084639498432, 0.927115987460815, 0.9443573667711599, 0.9278996865203761, 0.9231974921630094, 0.0384012539184953, 0.9443573667711599, 0.03605015673981191, 0.025078369905956112, 0.023510971786833857, 0.022727272727272728, 0.0219435736677116, 0.0219435736677116, 0.02115987460815047, 0.02115987460815047, 0.02115987460815047, 0.02115987460815047, 0.02037617554858934, 0.02037617554858934, 0.02037617554858934, 0.02037617554858934, 0.02586206896551724, 0.9294670846394985, 0.061128526645768025, 0.9467084639498433, 0.050940438871473356, 0.9216300940438872, 0.0274294670846395, 0.023510971786833857, 0.024294670846394983, 0.023510971786833857, 0.02115987460815047, 0.0219435736677116, 0.03134796238244514, 0.03683385579937304, 0.039968652037617555, 0.0438871473354232, 0.08307210031347963, 0.12695924764890282, 0.8675548589341693, 0.9490595611285266, 0.6912225705329154, 0.11912225705329153, 0.11285266457680251, 0.70141065830721, 0.7852664576802508, 0.9255485893416928, 0.8808777429467085, 0.7241379310344828, 0.4663009404388715, 0.07445141065830721, 0.06191222570532915, 0.041536050156739814, 0.03683385579937304, 0.030564263322884012, 0.0219435736677116, 0.016457680250783698, 0.014890282131661442, 0.011755485893416929, 0.0109717868338558, 0.01018808777429467, 0.0109717868338558, 0.9404388714733543, 0.011755485893416929, 0.0109717868338558, 0.0109717868338558, 0.012539184952978056, 0.012539184952978056, 0.013322884012539185, 0.014106583072100314, 0.013322884012539185, 0.012539184952978056, 0.013322884012539185, 0.014106583072100314, 0.658307210031348, 0.9278996865203761, 0.9020376175548589, 0.579153605015674, 0.014106583072100314, 0.014106583072100314, 0.011755485893416929, 0.0109717868338558, 0.0109717868338558, 0.011755485893416929, 0.01018808777429467, 0.0109717868338558, 0.01018808777429467, 0.01018808777429467, 0.009404388714733543, 0.009404388714733543, 0.009404388714733543, 0.0109717868338558, 0.0109717868338558, 0.009404388714733543, 0.01018808777429467, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.009404388714733543, 0.11050156739811912, 0.11755485893416928, 0.3957680250783699, 0.3957680250783699, 0.39655172413793105, 0.3996865203761755, 0.6661442006269592, 0.39655172413793105, 0.3957680250783699, 0.3957680250783699, 0.3949843260188088, 0.012539184952978056, 0.04310344827586207, 0.0109717868338558, 0.6105015673981191, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.011755485893416929, 0.011755485893416929, 0.06191222570532915, 0.12695924764890282, 0.5736677115987461], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/4F5.gap.json b/pfam_gap_rates/4F5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92db863f0fbb00a108a71e385309af0b707cb308
--- /dev/null
+++ b/pfam_gap_rates/4F5.gap.json
@@ -0,0 +1 @@
+{"family": "4F5", "n_seqs": 459, "length": 41, "gap_rates": [0.08932461873638345, 0.06971677559912855, 0.04793028322440087, 0.010893246187363835, 0.010893246187363835, 0.010893246187363835, 0.002178649237472767, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.030501089324618737, 0.15468409586056645, 0.2549019607843137, 0.3355119825708061, 0.4008714596949891, 0.869281045751634, 0.8910675381263616, 0.775599128540305, 0.017429193899782137, 0.04357298474945534, 0.04139433551198257, 0.0457516339869281, 0.05228758169934641, 0.02178649237472767, 0.030501089324618737, 0.04793028322440087, 0.05664488017429194, 0.07407407407407407, 0.0915032679738562, 0.09586056644880174, 0.10021786492374728, 0.12200435729847495, 0.5381263616557734, 0.8104575163398693], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/4HBT_2.gap.json b/pfam_gap_rates/4HBT_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ee26c8f80160fc1d28f795d4d519c89fa8b2306
--- /dev/null
+++ b/pfam_gap_rates/4HBT_2.gap.json
@@ -0,0 +1 @@
+{"family": "4HBT_2", "n_seqs": 2134, "length": 150, "gap_rates": [0.5796626054358013, 0.30880974695407687, 0.22586691658856609, 0.1429240862230553, 0.057638238050609185, 0.03608247422680412, 0.031865042174320526, 0.02483598875351453, 0.020618556701030927, 0.019212746016869727, 0.017338331771321464, 0.014526710402999063, 0.014058106841611996, 0.01358950328022493, 0.013120899718837863, 0.01077788191190253, 0.010309278350515464, 0.008903467666354265, 0.011715089034676664, 0.008903467666354265, 0.007497656982193065, 0.007497656982193065, 0.007497656982193065, 0.007029053420805998, 0.007029053420805998, 0.006560449859418931, 0.006560449859418931, 0.006560449859418931, 0.006091846298031865, 0.1204311152764761, 0.9123711340206185, 0.9372071227741331, 0.9465791940018744, 0.9432989690721649, 0.9203373945641987, 0.8842549203373946, 0.15510777881911902, 0.10637300843486411, 0.08388003748828492, 0.07638238050609185, 0.8884723523898782, 0.42970946579194, 0.13261480787253982, 0.06419868791002811, 0.038425492033739454, 0.03327085285848173, 0.03420805998125586, 0.10543580131208997, 0.044048734770384255, 0.9133083411433927, 0.9451733833177132, 0.9273664479850047, 0.8926897844423618, 0.037019681349578254, 0.023430178069353328, 0.006560449859418931, 0.006091846298031865, 0.005154639175257732, 0.005623242736644799, 0.00937207122774133, 0.0037488284910965324, 0.004686035613870665, 0.0028116213683223993, 0.0023430178069353325, 0.0018744142455482662, 0.0018744142455482662, 0.0023430178069353325, 0.0014058106841611997, 0.0028116213683223993, 0.00046860356138706655, 0.00046860356138706655, 0.0009372071227741331, 0.0014058106841611997, 0.0023430178069353325, 0.0018744142455482662, 0.9231490159325211, 0.0014058106841611997, 0.005154639175257732, 0.004217432052483599, 0.0023430178069353325, 0.0023430178069353325, 0.0032802249297094657, 0.004686035613870665, 0.005623242736644799, 0.005154639175257732, 0.9475164011246485, 0.9404873477038426, 0.008434864104967198, 0.01077788191190253, 0.007966260543580132, 0.007966260543580132, 0.029522024367385193, 0.007966260543580132, 0.008903467666354265, 0.008903467666354265, 0.008903467666354265, 0.008903467666354265, 0.009840674789128397, 0.010309278350515464, 0.01640112464854733, 0.014526710402999063, 0.9395501405810684, 0.4259606373008435, 0.331302717900656, 0.06607310215557638, 0.05248359887535145, 0.05951265229615745, 0.04779756326148079, 0.8992502343017807, 0.7685098406747891, 0.05014058106841612, 0.05060918462980318, 0.053420805998125584, 0.05576382380506092, 0.05529522024367385, 0.05810684161199625, 0.06232427366447985, 0.06607310215557638, 0.06841611996251172, 0.07544517338331772, 0.08528584817244611, 0.09137769447047797, 0.09700093720712277, 0.13074039362699155, 0.14104967197750704, 0.23758200562324275, 0.8772258669165885, 0.9334582942830365, 0.9353327085285849, 0.9376757263355201, 0.9386129334582943, 0.9414245548266167, 0.9390815370196813, 0.9386129334582943, 0.9372071227741331, 0.9343955014058107, 0.9329896907216495, 0.274601686972821, 0.2591377694470478, 0.2624179943767573, 0.27647610121836924, 0.28631677600749766, 0.30506091846298033, 0.3406747891283974, 0.36457357075913777, 0.40487347703842547, 0.4746954076850984, 0.5796626054358013, 0.7104029990627929, 0.895032802249297], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/7TMR-DISMED2.gap.json b/pfam_gap_rates/7TMR-DISMED2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e528f7478aec213772e410463f1ee3e88632d3f
--- /dev/null
+++ b/pfam_gap_rates/7TMR-DISMED2.gap.json
@@ -0,0 +1 @@
+{"family": "7TMR-DISMED2", "n_seqs": 546, "length": 151, "gap_rates": [0.6648351648351648, 0.41208791208791207, 0.30036630036630035, 0.23992673992673993, 0.21245421245421245, 0.20146520146520147, 0.19413919413919414, 0.19230769230769232, 0.184981684981685, 0.163003663003663, 0.14835164835164835, 0.13736263736263737, 0.13003663003663005, 0.12637362637362637, 0.11538461538461539, 0.11172161172161173, 0.10622710622710622, 0.1043956043956044, 0.7014652014652014, 0.45604395604395603, 0.3717948717948718, 0.2326007326007326, 0.1227106227106227, 0.09523809523809523, 0.09523809523809523, 0.7380952380952381, 0.07875457875457875, 0.08424908424908426, 0.9468864468864469, 0.2600732600732601, 0.13553113553113552, 0.09523809523809523, 0.08608058608058608, 0.07692307692307693, 0.07142857142857142, 0.07326007326007326, 0.0695970695970696, 0.06227106227106227, 0.06776556776556776, 0.0641025641025641, 0.06593406593406594, 0.047619047619047616, 0.03296703296703297, 0.020146520146520148, 0.014652014652014652, 0.007326007326007326, 0.003663003663003663, 0.0018315018315018315, 0.0018315018315018315, 0.0018315018315018315, 0.0018315018315018315, 0.0018315018315018315, 0.0018315018315018315, 0.9432234432234432, 0.9285714285714286, 0.163003663003663, 0.05860805860805861, 0.02564102564102564, 0.003663003663003663, 0.009157509157509158, 0.01098901098901099, 0.023809523809523808, 0.06227106227106227, 0.06227106227106227, 0.038461538461538464, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.02197802197802198, 0.01098901098901099, 0.007326007326007326, 0.009157509157509158, 0.018315018315018316, 0.014652014652014652, 0.009157509157509158, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.03296703296703297, 0.029304029304029304, 0.029304029304029304, 0.03296703296703297, 0.7271062271062271, 0.9322344322344323, 0.8864468864468864, 0.19963369963369965, 0.038461538461538464, 0.06043956043956044, 0.054945054945054944, 0.04395604395604396, 0.029304029304029304, 0.020146520146520148, 0.018315018315018316, 0.01282051282051282, 0.9084249084249084, 0.9304029304029304, 0.8864468864468864, 0.007326007326007326, 0.005494505494505495, 0.003663003663003663, 0.005494505494505495, 0.009157509157509158, 0.018315018315018316, 0.2893772893772894, 0.20512820512820512, 0.14835164835164835, 0.08058608058608059, 0.056776556776556776, 0.04395604395604396, 0.040293040293040296, 0.8626373626373627, 0.031135531135531136, 0.031135531135531136, 0.018315018315018316, 0.9432234432234432, 0.9212454212454212, 0.020146520146520148, 0.01282051282051282, 0.01098901098901099, 0.056776556776556776, 0.054945054945054944, 0.018315018315018316, 0.018315018315018316, 0.9358974358974359, 0.01282051282051282, 0.009157509157509158, 0.009157509157509158, 0.009157509157509158, 0.023809523809523808, 0.15934065934065933, 0.01282051282051282, 0.01098901098901099, 0.009157509157509158, 0.009157509157509158, 0.009157509157509158, 0.018315018315018316, 0.031135531135531136, 0.03663003663003663, 0.05128205128205128, 0.9395604395604396, 0.15384615384615385, 0.16483516483516483, 0.1227106227106227, 0.14102564102564102, 0.1575091575091575, 0.17765567765567766, 0.1978021978021978, 0.22344322344322345, 0.2673992673992674, 0.44505494505494503, 0.7912087912087912], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/7TMR-HDED.gap.json b/pfam_gap_rates/7TMR-HDED.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..977af6f3ee815528cdee29ce7c83ff415bed01d0
--- /dev/null
+++ b/pfam_gap_rates/7TMR-HDED.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Srab.gap.json b/pfam_gap_rates/7TM_GPCR_Srab.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..134cd81173bc089912c08ab1fd8217e3e6a6da06
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Srab.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/7tm_7.gap.json b/pfam_gap_rates/7tm_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7f94dc3b61479a37ef2220efd575f72bad3034e
--- /dev/null
+++ b/pfam_gap_rates/7tm_7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/A1_Propeptide.gap.json b/pfam_gap_rates/A1_Propeptide.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8ae6060de6c79f31bfcd3d76dd2fa4385efd7f6
--- /dev/null
+++ b/pfam_gap_rates/A1_Propeptide.gap.json
@@ -0,0 +1 @@
+{"family": "A1_Propeptide", "n_seqs": 144, "length": 30, "gap_rates": [0.4444444444444444, 0.2708333333333333, 0.08333333333333333, 0.034722222222222224, 0.027777777777777776, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7430555555555556, 0.041666666666666664, 0.05555555555555555, 0.13194444444444445, 0.1597222222222222, 0.1597222222222222, 0.1736111111111111, 0.2152777777777778, 0.2916666666666667, 0.3611111111111111, 0.4027777777777778, 0.4791666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/A2M_N.gap.json b/pfam_gap_rates/A2M_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c63879dbb079373327d120586c7a9815ea948de9
--- /dev/null
+++ b/pfam_gap_rates/A2M_N.gap.json
@@ -0,0 +1 @@
+{"family": "A2M_N", "n_seqs": 1027, "length": 110, "gap_rates": [0.8052580331061344, 0.1733203505355404, 0.08471275559883155, 0.04089581304771178, 0.024342745861733205, 0.014605647517039922, 0.012658227848101266, 0.008763388510223954, 0.007789678675754625, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0029211295034079843, 0.0019474196689386564, 0.0009737098344693282, 0.0, 0.0, 0.0, 0.0, 0.0009737098344693282, 0.0029211295034079843, 0.0038948393378773127, 0.7692307692307693, 0.9221032132424537, 0.7896786757546251, 0.7312560856864654, 0.0, 0.009737098344693282, 0.010710808179162609, 0.010710808179162609, 0.012658227848101266, 0.01557935735150925, 0.01557935735150925, 0.0029211295034079843, 0.8636806231742941, 0.9240506329113924, 0.9367088607594937, 0.8841285296981499, 0.7653359298928919, 0.19279454722492698, 0.011684518013631937, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.009737098344693282, 0.011684518013631937, 0.0009737098344693282, 0.0009737098344693282, 0.0009737098344693282, 0.0019474196689386564, 0.0019474196689386564, 0.0038948393378773127, 0.0019474196689386564, 0.0019474196689386564, 0.0009737098344693282, 0.0009737098344693282, 0.0029211295034079843, 0.0029211295034079843, 0.06329113924050633, 0.8997078870496592, 0.007789678675754625, 0.005842259006815969, 0.004868549172346641, 0.010710808179162609, 0.005842259006815969, 0.019474196689386564, 0.007789678675754625, 0.005842259006815969, 0.004868549172346641, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.005842259006815969, 0.005842259006815969, 0.007789678675754625, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.011684518013631937, 0.011684518013631937, 0.012658227848101266, 0.01557935735150925, 0.018500486854917234, 0.9016553067185978, 0.937682570593963, 0.9123661148977604, 0.8792599805258033, 0.5277507302823758, 0.5306718597857838, 0.3777994157740993, 0.18111002921129504, 0.1966893865628043, 0.2112950340798442, 0.2453748782862707, 0.2726387536514119, 0.2911392405063291, 0.31061343719571566, 0.32619279454722494, 0.34371957156767285, 0.37000973709834467, 0.38656280428432327, 0.42745861733203505, 0.4800389483933788], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_18.gap.json b/pfam_gap_rates/AAA_18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..231a8d9273a2bf7ab13414fdfe3a338175ff9a67
--- /dev/null
+++ b/pfam_gap_rates/AAA_18.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_18", "n_seqs": 1238, "length": 187, "gap_rates": [0.19143780290791598, 0.06865912762520193, 0.04361873990306947, 0.03877221324717286, 0.035541195476575124, 0.03150242326332795, 0.027463651050080775, 0.0210016155088853, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.01938610662358643, 0.017770597738287562, 0.017770597738287562, 0.021809369951534735, 0.025040387722132473, 0.14378029079159935, 0.7891760904684976, 0.27140549273021003, 0.22859450726978997, 0.6445880452342488, 0.7148626817447497, 0.8683360258481422, 0.8925686591276252, 0.925686591276252, 0.944264943457189, 0.9491114701130856, 0.9361873990306947, 0.9168012924071083, 0.8796445880452343, 0.747172859450727, 0.6704361873990307, 0.32148626817447495, 0.11631663974151858, 0.1147011308562197, 0.0864297253634895, 0.036348949919224556, 0.03231017770597738, 0.02988691437802908, 0.027463651050080775, 0.024232633279483037, 0.022617124394184167, 0.021809369951534735, 0.0420032310177706, 0.02988691437802908, 0.025848142164781908, 0.024232633279483037, 0.024232633279483037, 0.027463651050080775, 0.029079159935379646, 0.030694668820678513, 0.033925686591276254, 0.02665589660743134, 0.7924071082390953, 0.8707592891760905, 0.925686591276252, 0.9483037156704361, 0.9361873990306947, 0.8949919224555735, 0.8247172859450727, 0.691437802907916, 0.5864297253634895, 0.5161550888529887, 0.1381260096930533, 0.10339256865912763, 0.06785137318255251, 0.05492730210016155, 0.046849757673667204, 0.0420032310177706, 0.04281098546042003, 0.03796445880452343, 0.03796445880452343, 0.034733441033925685, 0.3053311793214863, 0.2827140549273021, 0.2665589660743134, 0.03877221324717286, 0.03796445880452343, 0.036348949919224556, 0.035541195476575124, 0.03715670436187399, 0.04281098546042003, 0.049273021001615507, 0.11873990306946688, 0.2988691437802908, 0.3974151857835218, 0.7011308562197092, 0.7277867528271406, 0.7423263327948304, 0.7819063004846527, 0.8126009693053312, 0.8610662358642972, 0.901453957996769, 0.9119547657512116, 0.9297253634894992, 0.9394184168012925, 0.9491114701130856, 0.9434571890145396, 0.9345718901453958, 0.9159935379644588, 0.9087237479806138, 0.8877221324717286, 0.8521809369951535, 0.8037156704361874, 0.7762520193861067, 0.7334410339256866, 0.7172859450726979, 0.6768982229402262, 0.6066235864297254, 0.4903069466882068, 0.3974151857835218, 0.3287560581583199, 0.19547657512116318, 0.07189014539579967, 0.05411954765751212, 0.14054927302100162, 0.9466882067851373, 0.02827140549273021, 0.025040387722132473, 0.0210016155088853, 0.021809369951534735, 0.022617124394184167, 0.023424878836833602, 0.025040387722132473, 0.025848142164781908, 0.023424878836833602, 0.02665589660743134, 0.02988691437802908, 0.029079159935379646, 0.0395799676898223, 0.03877221324717286, 0.04361873990306947, 0.08966074313408724, 0.12277867528271405, 0.11873990306946688, 0.5290791599353797, 0.7075928917609047, 0.808562197092084, 0.8820678513731826, 0.9248788368336026, 0.9474959612277868, 0.9402261712439418, 0.9103392568659128, 0.8424878836833603, 0.7560581583198708, 0.5912762520193862, 0.048465266558966075, 0.049273021001615507, 0.049273021001615507, 0.051696284329563816, 0.051696284329563816, 0.05250403877221325, 0.05331179321486268, 0.05411954765751212, 0.05411954765751212, 0.05654281098546042, 0.05815831987075929, 0.05815831987075929, 0.061389337641357025, 0.0630048465266559, 0.06946688206785137, 0.07027463651050081, 0.07996768982229402, 0.10096930533117932, 0.1801292407108239, 0.21567043618739903, 0.2520193861066236, 0.29806138933764137, 0.33521809369951533, 0.40064620355411956, 0.44345718901453957, 0.9483037156704361, 0.9337641357027464, 0.4911147011308562, 0.5323101777059773, 0.561389337641357, 0.5807754442649434, 0.6009693053311793, 0.6114701130856219, 0.6308562197092084, 0.6526655896607432, 0.8303715670436187], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_21.gap.json b/pfam_gap_rates/AAA_21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70a5d5876fe58d2e6bc9ae7957400b2376ca367e
--- /dev/null
+++ b/pfam_gap_rates/AAA_21.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_21", "n_seqs": 2657, "length": 385, "gap_rates": [0.7414377117049303, 0.641701166729394, 0.5502446368084306, 0.5344373353406097, 0.5325555137372977, 0.5302973278133233, 0.5295445991719985, 0.5284155062100113, 0.5284155062100113, 0.5284155062100113, 0.5280391418893489, 0.5280391418893489, 0.5280391418893489, 0.5280391418893489, 0.5280391418893489, 0.5280391418893489, 0.5276627775686865, 0.5276627775686865, 0.5276627775686865, 0.5494919081671058, 0.5491155438464433, 0.554384644335717, 0.6157320286036884, 0.6665412118931126, 0.7342867896123447, 0.8517124576590139, 0.8878434324426044, 0.9153180278509597, 0.9363944298080542, 0.9439217162213023, 0.9251035001881822, 0.8998870907038012, 0.8754234098607452, 0.8155814828754234, 0.7004140007527286, 0.7158449378998871, 0.7060594655626646, 0.6902521640948438, 0.6699284907790741, 0.6541211893112533, 0.6462175385773429, 0.6383138878434325, 0.6300338727888596, 0.6176138502070003, 0.6123447497177268, 0.6612721114038389, 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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_26.gap.json b/pfam_gap_rates/AAA_26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6875029fe33b8a5b7d2ff989ec2dd7f4a2cbf25e
--- /dev/null
+++ b/pfam_gap_rates/AAA_26.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_26", "n_seqs": 1981, "length": 274, "gap_rates": [0.696113074204947, 0.34124179707218577, 0.14941948510853104, 0.10600706713780919, 0.07168096920747097, 0.07016658253407371, 0.0696617869762746, 0.07016658253407371, 0.07168096920747097, 0.06814740030287733, 0.06612821807168097, 0.06612821807168097, 0.06511862695608278, 0.06511862695608278, 0.06410903584048461, 0.06208985360928824, 0.06208985360928824, 0.06057546693589096, 0.05805148914689551, 0.057041898031297326, 0.057041898031297326, 0.057041898031297326, 0.057041898031297326, 0.05552751135790005, 0.05552751135790005, 0.1519434628975265, 0.1463907117617365, 0.9318525996971226, 0.9232710752145381, 0.14235234729934376, 0.13679959616355375, 0.1337708228167592, 0.05401312468450278, 0.0636042402826855, 0.05805148914689551, 0.05805148914689551, 0.05148914689550732, 0.04946996466431095, 0.048965169106511865, 0.04946996466431095, 0.04846037354871277, 0.048965169106511865, 0.048965169106511865, 0.049974760222110046, 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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_29.gap.json b/pfam_gap_rates/AAA_29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dd40bc2b780b37d7ad977aeea1b8b2c6c98f2e2
--- /dev/null
+++ b/pfam_gap_rates/AAA_29.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_29", "n_seqs": 310, "length": 65, "gap_rates": [0.4258064516129032, 0.31290322580645163, 0.25806451612903225, 0.2161290322580645, 0.2064516129032258, 0.1967741935483871, 0.1967741935483871, 0.1967741935483871, 0.1935483870967742, 0.18064516129032257, 0.16774193548387098, 0.14516129032258066, 0.13548387096774195, 0.13225806451612904, 0.7129032258064516, 0.11935483870967742, 0.11612903225806452, 0.1032258064516129, 0.07096774193548387, 0.041935483870967745, 0.03870967741935484, 0.2806451612903226, 0.2645161290322581, 0.18387096774193548, 0.932258064516129, 0.6838709677419355, 0.22258064516129034, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0032258064516129032, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.01935483870967742, 0.041935483870967745, 0.04838709677419355, 0.054838709677419356, 0.07419354838709677, 0.8387096774193549, 0.6870967741935484, 0.34838709677419355, 0.24838709677419354, 0.16774193548387098, 0.17419354838709677, 0.18064516129032257, 0.2, 0.22580645161290322, 0.24838709677419354, 0.2838709677419355, 0.4032258064516129], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_32.gap.json b/pfam_gap_rates/AAA_32.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c25f8b8167a507a50afa43d94eec6f38a32df78b
--- /dev/null
+++ b/pfam_gap_rates/AAA_32.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_35.gap.json b/pfam_gap_rates/AAA_35.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d163c6ea9d2d9edef9b7d780b264e55d53409ae
--- /dev/null
+++ b/pfam_gap_rates/AAA_35.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_membrane_2.gap.json b/pfam_gap_rates/ABC_membrane_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6c78a8b5f87a177e579d393326da28cf6465414
--- /dev/null
+++ b/pfam_gap_rates/ABC_membrane_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ACT_4.gap.json b/pfam_gap_rates/ACT_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06f805bff105ec508ca017ffb3079118e72a1d57
--- /dev/null
+++ b/pfam_gap_rates/ACT_4.gap.json
@@ -0,0 +1 @@
+{"family": "ACT_4", "n_seqs": 2400, "length": 80, "gap_rates": [0.7641666666666667, 0.34041666666666665, 0.19166666666666668, 0.1425, 0.08625, 0.03916666666666667, 0.01625, 0.0075, 0.005416666666666667, 0.005, 0.004166666666666667, 0.00375, 0.00375, 0.00375, 0.0033333333333333335, 0.004166666666666667, 0.00375, 0.0020833333333333333, 0.0020833333333333333, 0.0016666666666666668, 0.00125, 0.0016666666666666668, 0.00125, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0008333333333333334, 0.91, 0.0008333333333333334, 0.0008333333333333334, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0008333333333333334, 0.0008333333333333334, 0.0008333333333333334, 0.0004166666666666667, 0.11916666666666667, 0.20375, 0.5820833333333333, 0.0175, 0.08166666666666667, 0.006666666666666667, 0.00375, 0.0016666666666666668, 0.00125, 0.00125, 0.00125, 0.00125, 0.00125, 0.0016666666666666668, 0.0016666666666666668, 0.0020833333333333333, 0.0020833333333333333, 0.0033333333333333335, 0.0033333333333333335, 0.00375, 0.00375, 0.00375, 0.00375, 0.004583333333333333, 0.004583333333333333, 0.004583333333333333, 0.005, 0.00625, 0.009166666666666667, 0.014166666666666666, 0.0225, 0.0275, 0.029583333333333333, 0.032916666666666664, 0.03666666666666667, 0.05333333333333334, 0.06208333333333333, 0.09875, 0.13791666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ACT_5.gap.json b/pfam_gap_rates/ACT_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b263ce1cae474f1d348ee0329065e07b1a6031f
--- /dev/null
+++ b/pfam_gap_rates/ACT_5.gap.json
@@ -0,0 +1 @@
+{"family": "ACT_5", "n_seqs": 1228, "length": 64, "gap_rates": [0.8070032573289903, 0.247557003257329, 0.09609120521172639, 0.015472312703583062, 0.008957654723127036, 0.004071661237785016, 0.003257328990228013, 0.0024429967426710096, 0.0024429967426710096, 0.0024429967426710096, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9014657980456026, 0.04071661237785016, 0.03257328990228013, 0.0008143322475570033, 0.0008143322475570033, 0.003257328990228013, 0.004071661237785016, 0.003257328990228013, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.10179153094462541, 0.0, 0.0024429967426710096, 0.0008143322475570033, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004071661237785016, 0.006514657980456026, 0.008143322475570033, 0.009771986970684038, 0.028501628664495113, 0.15716612377850162], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AD.gap.json b/pfam_gap_rates/AD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45d0bdb3175154e4edd251a542c84be65969eb32
--- /dev/null
+++ b/pfam_gap_rates/AD.gap.json
@@ -0,0 +1 @@
+{"family": "AD", "n_seqs": 231, "length": 94, "gap_rates": [0.4069264069264069, 0.2077922077922078, 0.18614718614718614, 0.18614718614718614, 0.15584415584415584, 0.13852813852813853, 0.11255411255411256, 0.09956709956709957, 0.09523809523809523, 0.09090909090909091, 0.08658008658008658, 0.06926406926406926, 0.06060606060606061, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.05627705627705628, 0.05194805194805195, 0.05627705627705628, 0.03896103896103896, 0.03463203463203463, 0.030303030303030304, 0.09090909090909091, 0.07792207792207792, 0.025974025974025976, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.021645021645021644, 0.9134199134199135, 0.017316017316017316, 0.48917748917748916, 0.025974025974025976, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.03463203463203463, 0.03463203463203463, 0.03463203463203463, 0.03463203463203463, 0.935064935064935, 0.08225108225108226, 0.03463203463203463, 0.03463203463203463, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.04329004329004329, 0.04329004329004329, 0.047619047619047616, 0.05627705627705628, 0.37662337662337664, 0.5670995670995671, 0.6233766233766234, 0.8051948051948052, 0.9090909090909091, 0.8831168831168831, 0.7835497835497836, 0.22510822510822512, 0.12987012987012986, 0.12554112554112554, 0.11688311688311688, 0.10822510822510822, 0.11688311688311688, 0.12121212121212122, 0.1341991341991342, 0.1341991341991342, 0.13852813852813853, 0.14285714285714285, 0.1645021645021645, 0.19913419913419914, 0.2727272727272727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ADH_zinc_N.gap.json b/pfam_gap_rates/ADH_zinc_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2dcc8a1ffb09007f4c39deaaaa684415c59d16c9
--- /dev/null
+++ b/pfam_gap_rates/ADH_zinc_N.gap.json
@@ -0,0 +1 @@
+{"family": "ADH_zinc_N", "n_seqs": 5000, "length": 149, "gap_rates": [0.2072, 0.0716, 0.0362, 0.0292, 0.0248, 0.0224, 0.0204, 0.0186, 0.0168, 0.0166, 0.0156, 0.0148, 0.0132, 0.0124, 0.5714, 0.0114, 0.012, 0.0114, 0.0118, 0.011, 0.0114, 0.01, 0.0098, 0.0644, 0.0114, 0.0198, 0.0118, 0.0112, 0.0098, 0.0086, 0.0084, 0.0082, 0.9274, 0.0078, 0.008, 0.009, 0.9302, 0.0096, 0.0098, 0.0276, 0.013, 0.0102, 0.0096, 0.009, 0.019, 0.0186, 0.0328, 0.1978, 0.8282, 0.9298, 0.9474, 0.8916, 0.7124, 0.1352, 0.1106, 0.0496, 0.0422, 0.0344, 0.028, 0.0244, 0.0242, 0.1054, 0.0924, 0.0696, 0.945, 0.9058, 0.4282, 0.0976, 0.009, 0.0088, 0.009, 0.0088, 0.0088, 0.009, 0.0094, 0.0106, 0.0122, 0.4386, 0.0378, 0.0408, 0.0416, 0.0448, 0.0468, 0.048, 0.0494, 0.0508, 0.0526, 0.0536, 0.056, 0.059, 0.0626, 0.0654, 0.9362, 0.0672, 0.0718, 0.0728, 0.0738, 0.0762, 0.0798, 0.0856, 0.0892, 0.0906, 0.1046, 0.863, 0.911, 0.9466, 0.92, 0.8958, 0.7594, 0.393, 0.1562, 0.1382, 0.1348, 0.1366, 0.1402, 0.1436, 0.1484, 0.1518, 0.1552, 0.1576, 0.1626, 0.1756, 0.1704, 0.1752, 0.1846, 0.1904, 0.1932, 0.1988, 0.205, 0.2152, 0.2254, 0.2346, 0.246, 0.26, 0.8972, 0.9298, 0.8268, 0.447, 0.3838, 0.4064, 0.4306, 0.454, 0.4736, 0.4976, 0.521, 0.5594, 0.6108, 0.6762, 0.8284], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ADPrib_exo_Tox.gap.json b/pfam_gap_rates/ADPrib_exo_Tox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6b078524855ffda282f74e27431004b7fc73587
--- /dev/null
+++ b/pfam_gap_rates/ADPrib_exo_Tox.gap.json
@@ -0,0 +1 @@
+{"family": "ADPrib_exo_Tox", "n_seqs": 124, "length": 240, "gap_rates": [0.8870967741935484, 0.8306451612903226, 0.782258064516129, 0.7419354838709677, 0.7258064516129032, 0.7016129032258065, 0.6693548387096774, 0.6370967741935484, 0.6048387096774194, 0.5725806451612904, 0.5403225806451613, 0.49193548387096775, 0.46774193548387094, 0.4435483870967742, 0.41935483870967744, 0.3387096774193548, 0.9193548387096774, 0.9193548387096774, 0.9354838709677419, 0.9435483870967742, 0.9354838709677419, 0.9193548387096774, 0.9193548387096774, 0.27419354838709675, 0.25, 0.25, 0.23387096774193547, 0.23387096774193547, 0.23387096774193547, 0.21774193548387097, 0.21774193548387097, 0.18548387096774194, 0.18548387096774194, 0.1693548387096774, 0.1693548387096774, 0.1693548387096774, 0.3387096774193548, 0.9435483870967742, 0.1774193548387097, 0.16129032258064516, 0.1532258064516129, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.9435483870967742, 0.13709677419354838, 0.13709677419354838, 0.14516129032258066, 0.14516129032258066, 0.5806451612903226, 0.532258064516129, 0.5, 0.4435483870967742, 0.3064516129032258, 0.25, 0.3790322580645161, 0.5241935483870968, 0.8064516129032258, 0.21774193548387097, 0.20161290322580644, 0.1532258064516129, 0.12903225806451613, 0.11290322580645161, 0.12096774193548387, 0.8709677419354839, 0.8709677419354839, 0.8870967741935484, 0.9193548387096774, 0.9274193548387096, 0.9354838709677419, 0.9354838709677419, 0.9274193548387096, 0.9193548387096774, 0.9032258064516129, 0.8870967741935484, 0.8709677419354839, 0.8709677419354839, 0.20161290322580644, 0.1935483870967742, 0.12903225806451613, 0.10483870967741936, 0.10483870967741936, 0.11290322580645161, 0.12096774193548387, 0.12096774193548387, 0.11290322580645161, 0.12096774193548387, 0.11290322580645161, 0.6854838709677419, 0.10483870967741936, 0.11290322580645161, 0.0967741935483871, 0.08870967741935484, 0.0967741935483871, 0.1532258064516129, 0.12096774193548387, 0.11290322580645161, 0.08870967741935484, 0.08064516129032258, 0.08064516129032258, 0.10483870967741936, 0.49193548387096775, 0.46774193548387094, 0.4596774193548387, 0.41935483870967744, 0.4112903225806452, 0.5080645161290323, 0.5241935483870968, 0.6612903225806451, 0.6370967741935484, 0.6129032258064516, 0.6129032258064516, 0.6612903225806451, 0.8467741935483871, 0.8709677419354839, 0.8951612903225806, 0.9435483870967742, 0.8951612903225806, 0.8790322580645161, 0.8548387096774194, 0.8225806451612904, 0.5645161290322581, 0.3709677419354839, 0.2903225806451613, 0.1693548387096774, 0.13709677419354838, 0.16129032258064516, 0.1774193548387097, 0.1693548387096774, 0.16129032258064516, 0.25, 0.1532258064516129, 0.0967741935483871, 0.07258064516129033, 0.056451612903225805, 0.04032258064516129, 0.03225806451612903, 0.03225806451612903, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.016129032258064516, 0.8225806451612904, 0.8709677419354839, 0.9274193548387096, 0.8951612903225806, 0.8467741935483871, 0.7903225806451613, 0.3629032258064516, 0.31451612903225806, 0.10483870967741936, 0.07258064516129033, 0.07258064516129033, 0.056451612903225805, 0.056451612903225805, 0.04838709677419355, 0.7096774193548387, 0.8709677419354839, 0.9354838709677419, 0.9274193548387096, 0.7983870967741935, 0.6370967741935484, 0.22580645161290322, 0.08064516129032258, 0.06451612903225806, 0.04032258064516129, 0.03225806451612903, 0.03225806451612903, 0.024193548387096774, 0.03225806451612903, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.024193548387096774, 0.04032258064516129, 0.04032258064516129, 0.04838709677419355, 0.056451612903225805, 0.06451612903225806, 0.04838709677419355, 0.07258064516129033, 0.9354838709677419, 0.08064516129032258, 0.07258064516129033, 0.08870967741935484, 0.06451612903225806, 0.782258064516129, 0.07258064516129033, 0.056451612903225805, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.06451612903225806, 0.13709677419354838, 0.14516129032258066, 0.16129032258064516, 0.1693548387096774, 0.1774193548387097, 0.20161290322580644, 0.21774193548387097, 0.28225806451612906, 0.29838709677419356, 0.33064516129032256, 0.3951612903225806, 0.4596774193548387, 0.6370967741935484, 0.717741935483871, 0.8709677419354839, 0.8790322580645161, 0.8951612903225806, 0.8790322580645161, 0.8790322580645161, 0.8709677419354839, 0.8629032258064516, 0.8548387096774194, 0.8548387096774194, 0.8709677419354839, 0.8709677419354839, 0.8870967741935484, 0.8951612903225806, 0.9032258064516129, 0.9112903225806451, 0.9112903225806451, 0.9274193548387096, 0.9354838709677419], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ADSL_C.gap.json b/pfam_gap_rates/ADSL_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ec7902e424d753b4083c9251c09c8c14a02a124
--- /dev/null
+++ b/pfam_gap_rates/ADSL_C.gap.json
@@ -0,0 +1 @@
+{"family": "ADSL_C", "n_seqs": 1699, "length": 89, "gap_rates": [0.06003531489111242, 0.03649205414949971, 0.018246027074749854, 0.012360211889346674, 0.00824014125956445, 0.004120070629782225, 0.004120070629782225, 0.004120070629782225, 0.003531489111241907, 0.003531489111241907, 0.003531489111241907, 0.002942907592701589, 0.002942907592701589, 0.34196586227192466, 0.003531489111241907, 0.7633902295467923, 0.00529723366686286, 0.004120070629782225, 0.0017657445556209534, 0.0017657445556209534, 0.0011771630370806356, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005885815185403178, 0.00529723366686286, 0.003531489111241907, 0.007651559741024131, 0.4891112419070041, 0.5544437904649794, 0.5679811653914068, 0.9399646851088875, 0.6003531489111242, 0.5615067686874632, 0.5361977633902295, 0.014125956444967627, 0.00529723366686286, 0.002942907592701589, 0.004708652148322542, 0.004120070629782225, 0.002354326074161271, 0.002354326074161271, 0.002942907592701589, 0.004120070629782225, 0.003531489111241907, 0.007062978222483814, 0.008828722778104767, 0.005885815185403178, 0.007651559741024131, 0.5344320188346086, 0.009417304296645085, 0.8787522071806946, 0.3937610359034726, 0.015303119482048263, 0.02413184226015303, 0.053560918187168925, 0.007062978222483814, 0.006474396703943496, 0.007651559741024131, 0.007062978222483814, 0.006474396703943496, 0.006474396703943496, 0.9234844025897587, 0.006474396703943496, 0.007062978222483814, 0.007062978222483814, 0.007062978222483814, 0.007062978222483814, 0.007062978222483814, 0.00824014125956445, 0.009417304296645085, 0.009417304296645085, 0.011771630370806356, 0.015891701000588582, 0.02707474985285462, 0.03590347263095939, 0.0659211300765156, 0.12654502648616833, 0.43437316068275456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AIG2_2.gap.json b/pfam_gap_rates/AIG2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01e0851799128040572e1f5ed2302b4f1323cdd0
--- /dev/null
+++ b/pfam_gap_rates/AIG2_2.gap.json
@@ -0,0 +1 @@
+{"family": "AIG2_2", "n_seqs": 356, "length": 106, "gap_rates": [0.4157303370786517, 0.13202247191011235, 0.05898876404494382, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.042134831460674156, 0.042134831460674156, 0.047752808988764044, 0.0449438202247191, 0.042134831460674156, 0.042134831460674156, 0.042134831460674156, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.042134831460674156, 0.042134831460674156, 0.042134831460674156, 0.042134831460674156, 0.19101123595505617, 0.15730337078651685, 0.15730337078651685, 0.28651685393258425, 0.033707865168539325, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.019662921348314606, 0.025280898876404494, 0.019662921348314606, 0.016853932584269662, 0.016853932584269662, 0.9353932584269663, 0.9382022471910112, 0.949438202247191, 0.9353932584269663, 0.9353932584269663, 0.016853932584269662, 0.02247191011235955, 0.9438202247191011, 0.8539325842696629, 0.10674157303370786, 0.014044943820224719, 0.016853932584269662, 0.2556179775280899, 0.019662921348314606, 0.014044943820224719, 0.008426966292134831, 0.0028089887640449437, 0.0028089887640449437, 0.0056179775280898875, 0.0056179775280898875, 0.0028089887640449437, 0.0028089887640449437, 0.0056179775280898875, 0.008426966292134831, 0.9382022471910112, 0.0056179775280898875, 0.8848314606741573, 0.8089887640449438, 0.0056179775280898875, 0.0028089887640449437, 0.8960674157303371, 0.7893258426966292, 0.0056179775280898875, 0.0, 0.8455056179775281, 0.8595505617977528, 0.8820224719101124, 0.8904494382022472, 0.9073033707865169, 0.9241573033707865, 0.9073033707865169, 0.8848314606741573, 0.8792134831460674, 0.8455056179775281, 0.8426966292134831, 0.0, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0056179775280898875, 0.0056179775280898875, 0.011235955056179775, 0.011235955056179775, 0.014044943820224719, 0.016853932584269662, 0.042134831460674156, 0.06460674157303371, 0.025280898876404494, 0.02247191011235955, 0.025280898876404494, 0.025280898876404494, 0.025280898876404494, 0.028089887640449437, 0.033707865168539325, 0.033707865168539325, 0.05056179775280899, 0.13764044943820225, 0.25280898876404495], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AIM24.gap.json b/pfam_gap_rates/AIM24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b6fe4eda537a5fe7c0d23a2d956f1784f521299
--- /dev/null
+++ b/pfam_gap_rates/AIM24.gap.json
@@ -0,0 +1 @@
+{"family": "AIM24", "n_seqs": 1310, "length": 277, "gap_rates": [0.517557251908397, 0.42824427480916033, 0.3893129770992366, 0.36259541984732824, 0.3320610687022901, 0.3137404580152672, 0.8183206106870229, 0.2786259541984733, 0.22366412213740458, 0.15877862595419848, 0.13206106870229006, 0.12366412213740458, 0.11450381679389313, 0.10458015267175573, 0.10076335877862595, 0.09923664122137404, 0.14427480916030536, 0.16717557251908396, 0.10534351145038168, 0.1251908396946565, 0.05877862595419847, 0.05267175572519084, 0.04885496183206107, 0.048091603053435114, 0.048091603053435114, 0.04732824427480916, 0.04732824427480916, 0.04732824427480916, 0.04351145038167939, 0.04351145038167939, 0.04351145038167939, 0.044274809160305344, 0.04732824427480916, 0.0450381679389313, 0.0450381679389313, 0.0450381679389313, 0.0450381679389313, 0.09465648854961832, 0.09541984732824428, 0.08702290076335878, 0.17709923664122137, 0.34961832061068704, 0.6587786259541984, 0.766412213740458, 0.7992366412213741, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ALAD.gap.json b/pfam_gap_rates/ALAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24ce81e18cd013f1d1a867a029d4d2e92d9a90b3
--- /dev/null
+++ b/pfam_gap_rates/ALAD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ALG3.gap.json b/pfam_gap_rates/ALG3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..803408819aa151af93133dd4542d5d905e90dca4
--- /dev/null
+++ b/pfam_gap_rates/ALG3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ALS_ss_C.gap.json b/pfam_gap_rates/ALS_ss_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..169b6a72af42ac12e0fb65cfe880e4719b798a4c
--- /dev/null
+++ b/pfam_gap_rates/ALS_ss_C.gap.json
@@ -0,0 +1 @@
+{"family": "ALS_ss_C", "n_seqs": 1858, "length": 75, "gap_rates": [0.11463939720129171, 0.08073196986006459, 0.07588805166846072, 0.07427341227125941, 0.073735199138859, 0.073735199138859, 0.073735199138859, 0.07265877287405813, 0.07265877287405813, 0.07265877287405813, 0.07158234660925726, 0.06942949407965554, 0.08665231431646932, 0.8858988159311088, 0.038751345532831, 0.0193756727664155, 0.01022604951560818, 0.003767491926803014, 0.002691065662002153, 0.002691065662002153, 0.002691065662002153, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.0016146393972012918, 0.0016146393972012918, 0.0016146393972012918, 0.0016146393972012918, 0.0016146393972012918, 0.001076426264800861, 0.001076426264800861, 0.0005382131324004305, 0.0005382131324004305, 0.0005382131324004305, 0.001076426264800861, 0.001076426264800861, 0.001076426264800861, 0.001076426264800861, 0.001076426264800861, 0.0005382131324004305, 0.0005382131324004305, 0.0005382131324004305, 0.0005382131324004305, 0.0016146393972012918, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.0032292787944025836, 0.004305705059203444, 0.002691065662002153, 0.002691065662002153, 0.002691065662002153, 0.002691065662002153, 0.003767491926803014, 0.004843918191603875, 0.004843918191603875, 0.004843918191603875, 0.004843918191603875, 0.004843918191603875, 0.004843918191603875, 0.005920344456404736, 0.008611410118406888, 0.01883745963401507, 0.07534983853606028, 0.40204520990312165], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AMOP.gap.json b/pfam_gap_rates/AMOP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccaa3faaea22fe57bebaf2a68acad53d125feab9
--- /dev/null
+++ b/pfam_gap_rates/AMOP.gap.json
@@ -0,0 +1 @@
+{"family": "AMOP", "n_seqs": 209, "length": 214, "gap_rates": [0.42105263157894735, 0.22009569377990432, 0.16267942583732056, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.7464114832535885, 0.14354066985645933, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.7416267942583732, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.13875598086124402, 0.1339712918660287, 0.12440191387559808, 0.11961722488038277, 0.1291866028708134, 0.13875598086124402, 0.45933014354066987, 0.4354066985645933, 0.42105263157894735, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.7511961722488039, 0.7559808612440191, 0.7655502392344498, 0.7703349282296651, 0.7703349282296651, 0.8181818181818182, 0.7703349282296651, 0.7703349282296651, 0.7655502392344498, 0.7655502392344498, 0.7511961722488039, 0.7511961722488039, 0.11483253588516747, 0.11004784688995216, 0.11004784688995216, 0.11004784688995216, 0.11004784688995216, 0.11004784688995216, 0.11004784688995216, 0.10526315789473684, 0.11004784688995216, 0.10047846889952153, 0.10047846889952153, 0.10047846889952153, 0.35406698564593303, 0.3588516746411483, 0.37320574162679426, 0.3684210526315789, 0.3684210526315789, 0.8277511961722488, 0.1339712918660287, 0.14354066985645933, 0.13875598086124402, 0.14832535885167464, 0.12440191387559808, 0.12440191387559808, 0.1291866028708134, 0.6124401913875598, 0.6889952153110048, 0.13875598086124402, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.13875598086124402, 0.13875598086124402, 0.13875598086124402, 0.1339712918660287, 0.1339712918660287, 0.13875598086124402, 0.14354066985645933, 0.14354066985645933, 0.14832535885167464, 0.14354066985645933, 0.14354066985645933, 0.7320574162679426, 0.631578947368421, 0.13875598086124402, 0.13875598086124402, 0.11961722488038277, 0.8516746411483254, 0.8516746411483254, 0.8564593301435407, 0.861244019138756, 0.8660287081339713, 0.8660287081339713, 0.8660287081339713, 0.8708133971291866, 0.8851674641148325, 0.8947368421052632, 0.8708133971291866, 0.8660287081339713, 0.8660287081339713, 0.8660287081339713, 0.861244019138756, 0.8564593301435407, 0.8564593301435407, 0.8516746411483254, 0.8516746411483254, 0.11961722488038277, 0.11961722488038277, 0.11961722488038277, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11004784688995216, 0.11004784688995216, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11004784688995216, 0.35406698564593303, 0.35406698564593303, 0.4449760765550239, 0.41626794258373206, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273, 0.861244019138756, 0.7559808612440191, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273, 0.722488038277512, 0.37799043062200954, 0.37799043062200954, 0.3827751196172249, 0.3827751196172249, 0.3827751196172249, 0.3875598086124402, 0.3875598086124402, 0.14832535885167464, 0.15311004784688995, 0.13875598086124402, 0.1339712918660287, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.12440191387559808, 0.1291866028708134, 0.13875598086124402, 0.13875598086124402, 0.14832535885167464, 0.16267942583732056, 0.1339712918660287, 0.12440191387559808, 0.12440191387559808, 0.11961722488038277, 0.11961722488038277, 0.3588516746411483, 0.12440191387559808, 0.1339712918660287, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.7607655502392344, 0.7607655502392344, 0.7607655502392344, 0.7607655502392344, 0.7655502392344498, 0.7655502392344498, 0.7655502392344498, 0.7703349282296651, 0.7703349282296651, 0.7703349282296651, 0.7655502392344498, 0.7655502392344498, 0.7655502392344498, 0.7655502392344498, 0.7607655502392344, 0.7607655502392344, 0.7607655502392344, 0.7607655502392344, 0.1339712918660287, 0.14354066985645933, 0.14354066985645933, 0.15311004784688995, 0.16267942583732056, 0.39712918660287083, 0.430622009569378, 0.861244019138756, 0.8564593301435407, 0.5980861244019139, 0.40669856459330145, 0.3349282296650718, 0.3444976076555024, 0.36363636363636365, 0.4258373205741627, 0.7511961722488039], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ANAPC4.gap.json b/pfam_gap_rates/ANAPC4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..94417b26af2bf30239810c509c21ae923ca4cc84
--- /dev/null
+++ b/pfam_gap_rates/ANAPC4.gap.json
@@ -0,0 +1 @@
+{"family": "ANAPC4", "n_seqs": 264, "length": 216, "gap_rates": [0.7878787878787878, 0.5606060606060606, 0.4393939393939394, 0.38636363636363635, 0.3143939393939394, 0.2916666666666667, 0.2727272727272727, 0.26515151515151514, 0.25757575757575757, 0.24621212121212122, 0.2727272727272727, 0.2727272727272727, 0.3409090909090909, 0.29924242424242425, 0.20075757575757575, 0.17803030303030304, 0.1590909090909091, 0.1553030303030303, 0.15151515151515152, 0.14015151515151514, 0.13257575757575757, 0.13636363636363635, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.10984848484848485, 0.10984848484848485, 0.10606060606060606, 0.10227272727272728, 0.10227272727272728, 0.10227272727272728, 0.10227272727272728, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.10227272727272728, 0.10984848484848485, 0.9242424242424242, 0.928030303030303, 0.9356060606060606, 0.928030303030303, 0.9242424242424242, 0.9242424242424242, 0.10984848484848485, 0.10984848484848485, 0.09848484848484848, 0.09848484848484848, 0.0946969696969697, 0.0946969696969697, 0.0946969696969697, 0.0946969696969697, 0.10227272727272728, 0.10227272727272728, 0.0946969696969697, 0.0946969696969697, 0.0946969696969697, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.1590909090909091, 0.17803030303030304, 0.16666666666666666, 0.17424242424242425, 0.19318181818181818, 0.9166666666666666, 0.946969696969697, 0.9356060606060606, 0.8371212121212122, 0.696969696969697, 0.4734848484848485, 0.19318181818181818, 0.13636363636363635, 0.10227272727272728, 0.0946969696969697, 0.09090909090909091, 0.07196969696969698, 0.08333333333333333, 0.07196969696969698, 0.07196969696969698, 0.06818181818181818, 0.07196969696969698, 0.07196969696969698, 0.07196969696969698, 0.07196969696969698, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.07196969696969698, 0.07575757575757576, 0.07575757575757576, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.08712121212121213, 0.9356060606060606, 0.9242424242424242, 0.0946969696969697, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07575757575757576, 0.07575757575757576, 0.08712121212121213, 0.08712121212121213, 0.09090909090909091, 0.09090909090909091, 0.08712121212121213, 0.08712121212121213, 0.07196969696969698, 0.07196969696969698, 0.06818181818181818, 0.07196969696969698, 0.06439393939393939, 0.06439393939393939, 0.06439393939393939, 0.06439393939393939, 0.06439393939393939, 0.06818181818181818, 0.07196969696969698, 0.06818181818181818, 0.06818181818181818, 0.07196969696969698, 0.06818181818181818, 0.07196969696969698, 0.07575757575757576, 0.07196969696969698, 0.07575757575757576, 0.07954545454545454, 0.07575757575757576, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.08333333333333333, 0.08712121212121213, 0.09090909090909091, 0.08712121212121213, 0.0946969696969697, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.12878787878787878, 0.125, 0.12121212121212122, 0.12121212121212122, 0.13257575757575757, 0.1553030303030303, 0.19318181818181818, 0.1553030303030303, 0.1590909090909091, 0.1590909090909091, 0.125, 0.11742424242424243, 0.11742424242424243, 0.11363636363636363, 0.11363636363636363, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10984848484848485, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.12121212121212122, 0.13257575757575757, 0.13636363636363635, 0.14015151515151514, 0.14015151515151514, 0.14393939393939395, 0.14393939393939395, 0.14393939393939395, 0.14772727272727273, 0.14772727272727273, 0.14772727272727273, 0.1590909090909091, 0.16287878787878787, 0.16287878787878787, 0.16287878787878787, 0.20075757575757575, 0.22727272727272727, 0.25757575757575757, 0.2727272727272727, 0.29924242424242425, 0.3446969696969697, 0.4166666666666667, 0.5189393939393939, 0.7878787878787878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ANF_receptor.gap.json b/pfam_gap_rates/ANF_receptor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a8b960f028fd13aa341e4f7ce2d683852533cbf
--- /dev/null
+++ b/pfam_gap_rates/ANF_receptor.gap.json
@@ -0,0 +1 @@
+{"family": "ANF_receptor", "n_seqs": 4276, "length": 488, "gap_rates": [0.8166510757717493, 0.6461646398503275, 0.5161365762394762, 0.4471468662301216, 0.40177736202058, 0.3844714686623012, 0.3685687558465856, 0.3615528531337699, 0.35547240411599623, 0.35640785781103834, 0.3540692235734331, 0.3498596819457437, 0.34822263797942, 0.3498596819457437, 0.3479887745556595, 0.4342843779232928, 0.3697380729653882, 0.3648269410664172, 0.3423760523854069, 0.3437792329279701, 0.35968194574368567, 0.3437792329279701, 0.3222637979420019, 0.31735266604303086, 0.31641721234798875, 0.31127221702525726, 0.3098690364826941, 0.3058933582787652, 0.9127689429373246, 0.8858746492048644, 0.30144995322731527, 0.3009822263797942, 0.2977081384471469, 0.29256314312441534, 0.2902245088868101, 0.30121608980355474, 0.2909260991580917, 0.2876520112254443, 0.2832086061739944, 0.2778297474275023, 0.27502338634237605, 0.27268475210477083, 0.2635640785781104, 0.25654817586529466, 0.2537418147801684, 0.2507015902712816, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ANTAR.gap.json b/pfam_gap_rates/ANTAR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..689375e9c2adde1d770a4330c8214415b16dfacf
--- /dev/null
+++ b/pfam_gap_rates/ANTAR.gap.json
@@ -0,0 +1 @@
+{"family": "ANTAR", "n_seqs": 1458, "length": 54, "gap_rates": [0.8209876543209876, 0.35459533607681754, 0.20233196159122085, 0.13786008230452676, 0.1056241426611797, 0.0877914951989026, 0.06858710562414266, 0.04252400548696845, 0.024691358024691357, 0.0205761316872428, 0.013717421124828532, 0.008916323731138546, 0.0054869684499314125, 0.00411522633744856, 0.003429355281207133, 0.0013717421124828531, 0.0013717421124828531, 0.0013717421124828531, 0.0013717421124828531, 0.0013717421124828531, 0.0, 0.0, 0.00411522633744856, 0.006172839506172839, 0.0, 0.0013717421124828531, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.00205761316872428, 0.0027434842249657062, 0.004801097393689987, 0.0054869684499314125, 0.009602194787379973, 0.02263374485596708, 0.043209876543209874, 0.1419753086419753], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ANTH.gap.json b/pfam_gap_rates/ANTH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdeb342b4a43f185f7dcaa00bcfc281e7cd5e46f
--- /dev/null
+++ b/pfam_gap_rates/ANTH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AP3B1_C.gap.json b/pfam_gap_rates/AP3B1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19231ed1d576c32115f50e2464397425f922c9af
--- /dev/null
+++ b/pfam_gap_rates/AP3B1_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/APOBEC_N.gap.json b/pfam_gap_rates/APOBEC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..071f2d323ea08348b03cba8b381041d3ad892cab
--- /dev/null
+++ b/pfam_gap_rates/APOBEC_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/APO_RNA-bind.gap.json b/pfam_gap_rates/APO_RNA-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..950a4b77494eae29490681f86b069d33ff0c4d5c
--- /dev/null
+++ b/pfam_gap_rates/APO_RNA-bind.gap.json
@@ -0,0 +1 @@
+{"family": "APO_RNA-bind", "n_seqs": 249, "length": 202, "gap_rates": [0.8755020080321285, 0.8554216867469879, 0.8313253012048193, 0.7951807228915663, 0.7831325301204819, 0.7751004016064257, 0.7469879518072289, 0.7228915662650602, 0.7028112449799196, 0.6867469879518072, 0.6706827309236948, 0.6666666666666666, 0.6666666666666666, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6586345381526104, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6465863453815262, 0.6465863453815262, 0.6465863453815262, 0.6465863453815262, 0.642570281124498, 0.642570281124498, 0.6305220883534136, 0.5983935742971888, 0.5823293172690763, 0.5662650602409639, 0.5582329317269076, 0.5542168674698795, 0.5542168674698795, 0.5502008032128514, 0.5582329317269076, 0.5662650602409639, 0.5662650602409639, 0.5381526104417671, 0.5261044176706827, 0.5261044176706827, 0.5261044176706827, 0.5261044176706827, 0.5261044176706827, 0.5261044176706827, 0.9116465863453815, 0.5220883534136547, 0.5220883534136547, 0.5180722891566265, 0.5180722891566265, 0.5140562248995983, 0.4979919678714859, 0.4979919678714859, 0.4899598393574297, 0.44176706827309237, 0.3534136546184739, 0.321285140562249, 0.3092369477911647, 0.2570281124497992, 0.12048192771084337, 0.10040160642570281, 0.0963855421686747, 0.07228915662650602, 0.0642570281124498, 0.0642570281124498, 0.0642570281124498, 0.0642570281124498, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.07228915662650602, 0.07228915662650602, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.0642570281124498, 0.0642570281124498, 0.060240963855421686, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05220883534136546, 0.05220883534136546, 0.05220883534136546, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.040160642570281124, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.03614457831325301, 0.0321285140562249, 0.040160642570281124, 0.04417670682730924, 0.04819277108433735, 0.060240963855421686, 0.0321285140562249, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.0321285140562249, 0.0321285140562249, 0.0321285140562249, 0.0321285140562249, 0.0321285140562249, 0.04819277108433735, 0.03614457831325301, 0.0321285140562249, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.04417670682730924, 0.04417670682730924, 0.04819277108433735, 0.05622489959839357, 0.06827309236947791, 0.06827309236947791, 0.060240963855421686, 0.04417670682730924, 0.9397590361445783, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.0642570281124498, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05220883534136546, 0.05220883534136546, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05220883534136546, 0.060240963855421686, 0.08032128514056225, 0.08433734939759036, 0.10843373493975904, 0.9357429718875502, 0.21285140562248997, 0.9156626506024096, 0.39759036144578314, 0.4497991967871486, 0.5060240963855421, 0.5582329317269076, 0.5622489959839357, 0.5863453815261044, 0.6104417670682731, 0.6345381526104418, 0.6385542168674698, 0.6385542168674698, 0.6385542168674698, 0.642570281124498, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.891566265060241, 0.6506024096385542, 0.6546184738955824, 0.6706827309236948], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ARPC4.gap.json b/pfam_gap_rates/ARPC4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c802fdb7c9d0e1c8efd826a10c71b4811e4004f8
--- /dev/null
+++ b/pfam_gap_rates/ARPC4.gap.json
@@ -0,0 +1 @@
+{"family": "ARPC4", "n_seqs": 306, "length": 168, "gap_rates": [0.3627450980392157, 0.2549019607843137, 0.19607843137254902, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.1568627450980392, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.1111111111111111, 0.1111111111111111, 0.11437908496732026, 0.9379084967320261, 0.11437908496732026, 0.11437908496732026, 0.1111111111111111, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10457516339869281, 0.10130718954248366, 0.10457516339869281, 0.10457516339869281, 0.09477124183006536, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.0915032679738562, 0.0915032679738562, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08496732026143791, 0.08496732026143791, 0.08496732026143791, 0.08496732026143791, 0.08169934640522876, 0.08169934640522876, 0.08169934640522876, 0.0784313725490196, 0.07516339869281045, 0.07516339869281045, 0.0718954248366013, 0.06862745098039216, 0.06862745098039216, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.07516339869281045, 0.07516339869281045, 0.07516339869281045, 0.07516339869281045, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06535947712418301, 0.06209150326797386, 0.06209150326797386, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06209150326797386, 0.06209150326797386, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.05228758169934641, 0.049019607843137254, 0.05555555555555555, 0.06535947712418301, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06535947712418301, 0.05228758169934641, 0.05228758169934641, 0.05228758169934641, 0.058823529411764705, 0.058823529411764705, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.06209150326797386, 0.06209150326797386, 0.058823529411764705, 0.06209150326797386, 0.06535947712418301, 0.06535947712418301, 0.06862745098039216, 0.0718954248366013, 0.07516339869281045, 0.0718954248366013, 0.07516339869281045, 0.07516339869281045, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08823529411764706, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.10130718954248366, 0.10457516339869281, 0.10784313725490197, 0.10784313725490197, 0.11764705882352941, 0.12091503267973856, 0.12091503267973856, 0.13398692810457516, 0.21568627450980393, 0.9084967320261438], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ASL_C.gap.json b/pfam_gap_rates/ASL_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6108e9c449e8468d3bb2b6212b7ee1e699b3208b
--- /dev/null
+++ b/pfam_gap_rates/ASL_C.gap.json
@@ -0,0 +1 @@
+{"family": "ASL_C", "n_seqs": 782, "length": 123, "gap_rates": [0.02557544757033248, 0.016624040920716114, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.01278772378516624, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.015345268542199489, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.011508951406649617, 0.011508951406649617, 0.8797953964194374, 0.8797953964194374, 0.8797953964194374, 0.8797953964194374, 0.8797953964194374, 0.8797953964194374, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.015345268542199489, 0.015345268542199489, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.7455242966751918, 0.014066496163682864, 0.016624040920716114, 0.017902813299232736, 0.017902813299232736, 0.017902813299232736, 0.01918158567774936, 0.01918158567774936, 0.020460358056265986, 0.020460358056265986, 0.020460358056265986, 0.01918158567774936, 0.020460358056265986, 0.024296675191815855, 0.029411764705882353, 0.0370843989769821, 0.9462915601023018, 0.04092071611253197, 0.04219948849104859, 0.04219948849104859, 0.03964194373401535, 0.04219948849104859, 0.04219948849104859, 0.043478260869565216, 0.04219948849104859, 0.04219948849104859, 0.04475703324808184, 0.04731457800511509, 0.04859335038363171, 0.054987212276214836, 0.06010230179028133, 0.0639386189258312, 0.06521739130434782, 0.06649616368286446, 0.0907928388746803], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATC_hydrolase.gap.json b/pfam_gap_rates/ATC_hydrolase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e5322eeff13e409fdc9186e537662379a565830
--- /dev/null
+++ b/pfam_gap_rates/ATC_hydrolase.gap.json
@@ -0,0 +1 @@
+{"family": "ATC_hydrolase", "n_seqs": 329, "length": 174, "gap_rates": [0.6960486322188449, 0.6048632218844985, 0.5440729483282675, 0.46504559270516715, 0.3860182370820669, 0.303951367781155, 0.2674772036474164, 0.24620060790273557, 0.7933130699088146, 0.7537993920972644, 0.2006079027355623, 0.19148936170212766, 0.1702127659574468, 0.1702127659574468, 0.1702127659574468, 0.16717325227963525, 0.16717325227963525, 0.16717325227963525, 0.16717325227963525, 0.1641337386018237, 0.2066869300911854, 0.9270516717325228, 0.7507598784194529, 0.22492401215805471, 0.2066869300911854, 0.1580547112462006, 0.15501519756838905, 0.1580547112462006, 0.13677811550151975, 0.12462006079027356, 0.12462006079027356, 0.12158054711246201, 0.12158054711246201, 0.12462006079027356, 0.12462006079027356, 0.12462006079027356, 0.9179331306990881, 0.9300911854103343, 0.9331306990881459, 0.9270516717325228, 0.8753799392097265, 0.19756838905775076, 0.2006079027355623, 0.1580547112462006, 0.1580547112462006, 0.9057750759878419, 0.14893617021276595, 0.14285714285714285, 0.13677811550151975, 0.13677811550151975, 0.1276595744680851, 0.12158054711246201, 0.12158054711246201, 0.1094224924012158, 0.1094224924012158, 0.1033434650455927, 0.1094224924012158, 0.1276595744680851, 0.547112462006079, 0.47720364741641336, 0.425531914893617, 0.3343465045592705, 0.23404255319148937, 0.21580547112462006, 0.1884498480243161, 0.11246200607902736, 0.0972644376899696, 0.08206686930091185, 0.08206686930091185, 0.09422492401215805, 0.0851063829787234, 0.11246200607902736, 0.3525835866261398, 0.8145896656534954, 0.8844984802431611, 0.8571428571428571, 0.7477203647416414, 0.3252279635258359, 0.3100303951367781, 0.2674772036474164, 0.25835866261398177, 0.3221884498480243, 0.17933130699088146, 0.5653495440729484, 0.7750759878419453, 0.8480243161094225, 0.8966565349544073, 0.8237082066869301, 0.662613981762918, 0.5197568389057751, 0.2188449848024316, 0.1884498480243161, 0.15501519756838905, 0.14285714285714285, 0.10638297872340426, 0.10030395136778116, 0.9331306990881459, 0.9118541033434651, 0.0243161094224924, 0.015197568389057751, 0.015197568389057751, 0.02127659574468085, 0.02735562310030395, 0.6382978723404256, 0.04559270516717325, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.8389057750759878, 0.015197568389057751, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.8389057750759878, 0.00303951367781155, 0.8844984802431611, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.0060790273556231, 0.0060790273556231, 0.057750759878419454, 0.02735562310030395, 0.1094224924012158, 0.8297872340425532, 0.9179331306990881, 0.8145896656534954, 0.3161094224924012, 0.2765957446808511, 0.0121580547112462, 0.00911854103343465, 0.0364741641337386, 0.0121580547112462, 0.0121580547112462, 0.015197568389057751, 0.015197568389057751, 0.0182370820668693, 0.0182370820668693, 0.0243161094224924, 0.030395136778115502, 0.03343465045592705, 0.0729483282674772, 0.0364741641337386, 0.05167173252279635, 0.08814589665653495, 0.23100303951367782, 0.3677811550151976], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP_transf.gap.json b/pfam_gap_rates/ATP_transf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa59ef4f9ccae4fba190cff99c4bdf8b42c8b439
--- /dev/null
+++ b/pfam_gap_rates/ATP_transf.gap.json
@@ -0,0 +1 @@
+{"family": "ATP_transf", "n_seqs": 252, "length": 77, "gap_rates": [0.11904761904761904, 0.023809523809523808, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.023809523809523808, 0.023809523809523808, 0.011904761904761904, 0.027777777777777776, 0.031746031746031744, 0.5992063492063492, 0.6150793650793651, 0.7301587301587301, 0.7619047619047619, 0.873015873015873, 0.9246031746031746, 0.9404761904761905, 0.9365079365079365, 0.8968253968253969, 0.7777777777777778, 0.7341269841269841, 0.6468253968253969, 0.6111111111111112, 0.5357142857142857, 0.4444444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003968253968253968, 0.007936507936507936, 0.007936507936507936, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.015873015873015872, 0.011904761904761904, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.027777777777777776, 0.031746031746031744, 0.7142857142857143, 0.051587301587301584, 0.03571428571428571, 0.031746031746031744, 0.03968253968253968, 0.03968253968253968, 0.753968253968254, 0.04365079365079365, 0.047619047619047616, 0.047619047619047616, 0.051587301587301584, 0.05952380952380952, 0.07142857142857142, 0.18253968253968253, 0.44047619047619047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATPase-cat_bd.gap.json b/pfam_gap_rates/ATPase-cat_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a49a715f9e9e3d3e5051f5a388e1ed38d6a05e1
--- /dev/null
+++ b/pfam_gap_rates/ATPase-cat_bd.gap.json
@@ -0,0 +1 @@
+{"family": "ATPase-cat_bd", "n_seqs": 293, "length": 86, "gap_rates": [0.32764505119453924, 0.06825938566552901, 0.06484641638225255, 0.06484641638225255, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.08191126279863481, 0.08191126279863481, 0.20819112627986347, 0.42662116040955633, 0.40273037542662116, 0.378839590443686, 0.3651877133105802, 0.24914675767918087, 0.12627986348122866, 0.11262798634812286, 0.09897610921501707, 0.06143344709897611, 0.051194539249146756, 0.03754266211604096, 0.034129692832764506, 0.030716723549488054, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0034129692832764505, 0.0034129692832764505, 0.013651877133105802, 0.017064846416382253, 0.017064846416382253, 0.020477815699658702, 0.020477815699658702, 0.09897610921501707, 0.08873720136518772, 0.08873720136518772, 0.09215017064846416, 0.06484641638225255, 0.07167235494880546, 0.08532423208191127, 0.09897610921501707, 0.20477815699658702, 0.21160409556313994, 0.24573378839590443, 0.44368600682593856, 0.89419795221843, 0.4402730375426621, 0.35494880546075086, 0.2832764505119454, 0.2593856655290102, 0.21160409556313994, 0.20819112627986347, 0.45051194539249145, 0.1945392491467577, 0.18088737201365188, 0.18088737201365188, 0.18088737201365188, 0.18088737201365188, 0.18430034129692832, 0.19112627986348124, 0.19112627986348124, 0.19795221843003413, 0.20477815699658702, 0.2150170648464164, 0.2354948805460751, 0.2354948805460751, 0.23890784982935154, 0.27303754266211605, 0.3037542662116041, 0.3583617747440273, 0.5187713310580204, 0.7303754266211604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AbfB.gap.json b/pfam_gap_rates/AbfB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8c42713b15f1fbc750c98fc8ce978f4ba22f291
--- /dev/null
+++ b/pfam_gap_rates/AbfB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Abhydrolase_1.gap.json b/pfam_gap_rates/Abhydrolase_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64d6a600388c613a1e6c5496c2c874568f7d0415
--- /dev/null
+++ b/pfam_gap_rates/Abhydrolase_1.gap.json
@@ -0,0 +1 @@
+{"family": "Abhydrolase_1", "n_seqs": 5000, "length": 375, "gap_rates": [0.6142, 0.2404, 0.1612, 0.1278, 0.1188, 0.114, 0.1114, 0.1094, 0.1078, 0.1062, 0.1044, 0.946, 0.9184, 0.1056, 0.105, 0.107, 0.1162, 0.9004, 0.931, 0.948, 0.94, 0.9234, 0.873, 0.1088, 0.1016, 0.0984, 0.7146, 0.6732, 0.1054, 0.091, 0.121, 0.0966, 0.0808, 0.0794, 0.1054, 0.4466, 0.841, 0.9222, 0.7764, 0.0474, 0.0428, 0.0396, 0.0388, 0.0376, 0.038, 0.0374, 0.0374, 0.0372, 0.0372, 0.037, 0.0362, 0.0356, 0.0348, 0.035, 0.046, 0.041, 0.039, 0.0372, 0.1, 0.2846, 0.618, 0.6448, 0.7818, 0.8144, 0.846, 0.8674, 0.9162, 0.9468, 0.9396, 0.911, 0.853, 0.834, 0.7956, 0.7524, 0.263, 0.2364, 0.1236, 0.9276, 0.9358, 0.9388, 0.9396, 0.9404, 0.9408, 0.9414, 0.9428, 0.944, 0.945, 0.9458, 0.9468, 0.95, 0.9478, 0.9462, 0.9454, 0.9444, 0.9432, 0.942, 0.9408, 0.9404, 0.9398, 0.939, 0.9376, 0.9306, 0.9152, 0.0568, 0.0552, 0.1142, 0.119, 0.026, 0.0228, 0.0212, 0.019, 0.0174, 0.0174, 0.9198, 0.9354, 0.878, 0.017, 0.0176, 0.948, 0.9038, 0.0162, 0.0166, 0.0162, 0.0164, 0.0168, 0.0154, 0.0136, 0.0122, 0.0114, 0.0198, 0.8498, 0.0128, 0.0118, 0.0126, 0.0118, 0.0122, 0.0122, 0.0128, 0.0134, 0.0138, 0.0146, 0.0148, 0.0158, 0.0166, 0.0176, 0.018, 0.019, 0.0224, 0.0308, 0.9122, 0.9488, 0.8518, 0.0278, 0.0286, 0.04, 0.0328, 0.033, 0.0336, 0.0348, 0.0382, 0.0418, 0.0452, 0.0484, 0.0524, 0.6514, 0.7858, 0.9206, 0.939, 0.8882, 0.7166, 0.5704, 0.42, 0.4522, 0.3786, 0.3474, 0.3412, 0.3236, 0.3134, 0.3154, 0.3206, 0.3312, 0.326, 0.335, 0.3406, 0.3476, 0.3584, 0.3668, 0.3762, 0.3828, 0.3874, 0.3944, 0.4004, 0.407, 0.4124, 0.4198, 0.424, 0.4292, 0.4358, 0.4406, 0.447, 0.451, 0.4564, 0.458, 0.4592, 0.4608, 0.4636, 0.4654, 0.4678, 0.4686, 0.4692, 0.4718, 0.4726, 0.473, 0.4738, 0.4752, 0.4766, 0.4774, 0.4806, 0.4814, 0.538, 0.5468, 0.6218, 0.679, 0.71, 0.7298, 0.734, 0.791, 0.7574, 0.816, 0.8394, 0.8638, 0.8818, 0.9004, 0.917, 0.9266, 0.9336, 0.9398, 0.9454, 0.9482, 0.943, 0.9364, 0.93, 0.9228, 0.9076, 0.892, 0.8732, 0.8548, 0.8258, 0.8002, 0.5114, 0.52, 0.5124, 0.5084, 0.5048, 0.5046, 0.5036, 0.5046, 0.5064, 0.5386, 0.526, 0.5422, 0.5176, 0.5104, 0.505, 0.4996, 0.5004, 0.4996, 0.502, 0.501, 0.5, 0.4994, 0.539, 0.5192, 0.5102, 0.5034, 0.501, 0.501, 0.4996, 0.5002, 0.5004, 0.5, 0.5002, 0.5018, 0.515, 0.5134, 0.5254, 0.5184, 0.527, 0.5268, 0.5654, 0.5644, 0.5474, 0.7658, 0.7856, 0.806, 0.8218, 0.8398, 0.8536, 0.8676, 0.885, 0.8952, 0.9096, 0.9202, 0.9324, 0.9402, 0.9494, 0.9374, 0.927, 0.9172, 0.902, 0.89, 0.8804, 0.8594, 0.8476, 0.8292, 0.8164, 0.7942, 0.7782, 0.756, 0.7368, 0.7322, 0.6846, 0.6764, 0.6434, 0.9248, 0.9416, 0.9018, 0.4882, 0.488, 0.4878, 0.488, 0.4882, 0.4892, 0.4888, 0.4938, 0.4922, 0.4906, 0.4912, 0.494, 0.4934, 0.4986, 0.5092, 0.908, 0.5012, 0.5018, 0.5024, 0.5038, 0.5062, 0.5064, 0.5114, 0.5216, 0.5144, 0.5246, 0.5222, 0.5192, 0.9412, 0.8938, 0.5892, 0.5236, 0.5226, 0.5222, 0.523, 0.5238, 0.5246, 0.5262, 0.5292, 0.5322, 0.5356, 0.553, 0.5836, 0.6248, 0.6746, 0.7246, 0.8062, 0.9306], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Abhydrolase_3.gap.json b/pfam_gap_rates/Abhydrolase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71e6420698fb0a6351a8f123b088c24a433e72a7
--- /dev/null
+++ b/pfam_gap_rates/Abhydrolase_3.gap.json
@@ -0,0 +1 @@
+{"family": "Abhydrolase_3", "n_seqs": 5000, "length": 256, "gap_rates": [0.3904, 0.2372, 0.2114, 0.2012, 0.1926, 0.1582, 0.1576, 0.1558, 0.1568, 0.1562, 0.156, 0.1554, 0.1552, 0.1554, 0.1546, 0.1524, 0.1514, 0.817, 0.9454, 0.7722, 0.149, 0.1476, 0.1452, 0.147, 0.1466, 0.1626, 0.149, 0.1506, 0.1844, 0.2058, 0.1516, 0.127, 0.1238, 0.122, 0.121, 0.1198, 0.1198, 0.1188, 0.1176, 0.1168, 0.1164, 0.1158, 0.1194, 0.1166, 0.122, 0.1192, 0.1098, 0.108, 0.1098, 0.107, 0.1054, 0.1028, 0.1006, 0.1004, 0.0996, 0.0992, 0.0984, 0.0984, 0.099, 0.099, 0.0992, 0.0994, 0.1, 0.1002, 0.102, 0.3, 0.8542, 0.8882, 0.912, 0.9496, 0.921, 0.9042, 0.8758, 0.8528, 0.3204, 0.8274, 0.3102, 0.2462, 0.1848, 0.129, 0.1112, 0.104, 0.1024, 0.1008, 0.1002, 0.0982, 0.098, 0.0968, 0.0974, 0.0982, 0.0982, 0.0982, 0.0984, 0.099, 0.1002, 0.1012, 0.1018, 0.103, 0.104, 0.105, 0.1094, 0.1208, 0.1308, 0.1364, 0.1396, 0.143, 0.16, 0.3004, 0.909, 0.2802, 0.2414, 0.1754, 0.6546, 0.7318, 0.8008, 0.8356, 0.8802, 0.9402, 0.9182, 0.854, 0.8142, 0.767, 0.6916, 0.6466, 0.16, 0.16, 0.1592, 0.1594, 0.16, 0.1612, 0.1602, 0.16, 0.1596, 0.8716, 0.8998, 0.8582, 0.1688, 0.2108, 0.3098, 0.2842, 0.914, 0.9398, 0.8602, 0.6444, 0.2932, 0.2634, 0.345, 0.3076, 0.2478, 0.2428, 0.2546, 0.6562, 0.7318, 0.7006, 0.4942, 0.4272, 0.3848, 0.9024, 0.3306, 0.3004, 0.3328, 0.2974, 0.2902, 0.2906, 0.3114, 0.2944, 0.2842, 0.2758, 0.264, 0.2572, 0.2728, 0.2706, 0.2564, 0.2518, 0.2472, 0.2444, 0.2536, 0.9222, 0.2882, 0.8538, 0.9378, 0.564, 0.287, 0.275, 0.2634, 0.259, 0.2586, 0.26, 0.2552, 0.9418, 0.2562, 0.2536, 0.2522, 0.2836, 0.264, 0.2942, 0.2826, 0.9064, 0.8244, 0.4716, 0.9184, 0.2756, 0.8368, 0.9482, 0.918, 0.7832, 0.2704, 0.2716, 0.2856, 0.2634, 0.2612, 0.259, 0.2588, 0.2584, 0.2584, 0.2588, 0.2588, 0.2594, 0.2594, 0.26, 0.267, 0.2612, 0.2628, 0.2636, 0.2638, 0.2646, 0.2656, 0.2664, 0.2672, 0.2676, 0.2682, 0.2688, 0.2694, 0.2706, 0.276, 0.2876, 0.949, 0.9328, 0.2908, 0.2924, 0.297, 0.3026, 0.3106, 0.3138, 0.3168, 0.32, 0.3222, 0.3256, 0.3294, 0.336, 0.342, 0.3468, 0.3472, 0.3772, 0.4418, 0.6154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Abhydrolase_5.gap.json b/pfam_gap_rates/Abhydrolase_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..045cfec3055c07f2df8907d712a98b15af59838d
--- /dev/null
+++ b/pfam_gap_rates/Abhydrolase_5.gap.json
@@ -0,0 +1 @@
+{"family": "Abhydrolase_5", "n_seqs": 242, "length": 192, "gap_rates": [0.6818181818181818, 0.2231404958677686, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.2066115702479339, 0.2066115702479339, 0.2066115702479339, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.9173553719008265, 0.19834710743801653, 0.2066115702479339, 0.2024793388429752, 0.19421487603305784, 0.9421487603305785, 0.9338842975206612, 0.19421487603305784, 0.19421487603305784, 0.19421487603305784, 0.19421487603305784, 0.19421487603305784, 0.19008264462809918, 0.19421487603305784, 0.2024793388429752, 0.2066115702479339, 0.1859504132231405, 0.1859504132231405, 0.9380165289256198, 0.9132231404958677, 0.1859504132231405, 0.18181818181818182, 0.9173553719008265, 0.9297520661157025, 0.9090909090909091, 0.17768595041322313, 0.17355371900826447, 0.1652892561983471, 0.15289256198347106, 0.11983471074380166, 0.10330578512396695, 0.09090909090909091, 0.08677685950413223, 0.08264462809917356, 0.07024793388429752, 0.07851239669421488, 0.06198347107438017, 0.08677685950413223, 0.8760330578512396, 0.1652892561983471, 0.19008264462809918, 0.05785123966942149, 0.1115702479338843, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.012396694214876033, 0.012396694214876033, 0.008264462809917356, 0.012396694214876033, 0.9338842975206612, 0.9256198347107438, 0.02066115702479339, 0.01652892561983471, 0.8884297520661157, 0.028925619834710745, 0.6322314049586777, 0.05785123966942149, 0.7975206611570248, 0.05785123966942149, 0.03305785123966942, 0.02066115702479339, 0.012396694214876033, 0.01652892561983471, 0.012396694214876033, 0.012396694214876033, 0.02066115702479339, 0.03305785123966942, 0.02066115702479339, 0.01652892561983471, 0.024793388429752067, 0.9338842975206612, 0.5867768595041323, 0.10330578512396695, 0.04132231404958678, 0.21074380165289255, 0.05785123966942149, 0.8553719008264463, 0.05371900826446281, 0.028925619834710745, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.03305785123966942, 0.049586776859504134, 0.049586776859504134, 0.045454545454545456, 0.04132231404958678, 0.0371900826446281, 0.03305785123966942, 0.04132231404958678, 0.049586776859504134, 0.05371900826446281, 0.0743801652892562, 0.8966942148760331, 0.9049586776859504, 0.9132231404958677, 0.9173553719008265, 0.9421487603305785, 0.9173553719008265, 0.9132231404958677, 0.8966942148760331, 0.8842975206611571, 0.0743801652892562, 0.0743801652892562, 0.07024793388429752, 0.07024793388429752, 0.08677685950413223, 0.0743801652892562, 0.0743801652892562, 0.0743801652892562, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.0743801652892562, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.1115702479338843, 0.21074380165289255, 0.21487603305785125, 0.2231404958677686, 0.23140495867768596, 0.9462809917355371, 0.9421487603305785, 0.24380165289256198, 0.256198347107438, 0.256198347107438, 0.256198347107438, 0.256198347107438, 0.2644628099173554, 0.2644628099173554, 0.2644628099173554, 0.2644628099173554, 0.2644628099173554, 0.26859504132231404, 0.26859504132231404, 0.28512396694214875, 0.29338842975206614, 0.30165289256198347, 0.30991735537190085, 0.3305785123966942, 0.4297520661157025, 0.9256198347107438], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acetate_kinase.gap.json b/pfam_gap_rates/Acetate_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69a018dd48f5074134e95fc9671c1cb230b3d9b1
--- /dev/null
+++ b/pfam_gap_rates/Acetate_kinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_1.gap.json b/pfam_gap_rates/Acetyltransf_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af8f8fd3e5fad8084fad36a96432dd9098b3ab71
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_1.gap.json
@@ -0,0 +1 @@
+{"family": "Acetyltransf_1", "n_seqs": 5000, "length": 144, "gap_rates": [0.9338, 0.9238, 0.9092, 0.8978, 0.8856, 0.875, 0.8642, 0.8538, 0.8516, 0.8284, 0.7818, 0.7598, 0.7192, 0.6916, 0.6636, 0.6408, 0.6172, 0.599, 0.5828, 0.5502, 0.9012, 0.9446, 0.8298, 0.5282, 0.5142, 0.4746, 0.447, 0.9412, 0.5572, 0.5168, 0.4744, 0.2728, 0.2512, 0.2288, 0.929, 0.7486, 0.1794, 0.1578, 0.147, 0.1348, 0.9236, 0.8154, 0.1206, 0.1128, 0.1038, 0.0888, 0.9124, 0.9446, 0.878, 0.0786, 0.0694, 0.9478, 0.0576, 0.054, 0.0512, 0.0506, 0.0496, 0.0574, 0.075, 0.07, 0.0706, 0.0698, 0.0738, 0.0508, 0.624, 0.775, 0.8284, 0.872, 0.8978, 0.919, 0.9392, 0.931, 0.9096, 0.885, 0.8542, 0.8018, 0.7264, 0.5436, 0.431, 0.3816, 0.282, 0.148, 0.0368, 0.0234, 0.0182, 0.0156, 0.0264, 0.007, 0.0034, 0.0034, 0.0022, 0.0024, 0.0016, 0.0018, 0.0022, 0.0028, 0.002, 0.0008, 0.001, 0.0014, 0.0014, 0.0014, 0.0016, 0.0022, 0.0024, 0.0024, 0.0046, 0.0048, 0.007, 0.0092, 0.025, 0.0198, 0.0212, 0.02, 0.0226, 0.8608, 0.0716, 0.064, 0.9496, 0.086, 0.0784, 0.106, 0.9408, 0.0652, 0.0636, 0.1894, 0.1604, 0.205, 0.1508, 0.1456, 0.1362, 0.1926, 0.1682, 0.1622, 0.124, 0.1248, 0.1262, 0.1306, 0.2462, 0.1652, 0.8914, 0.195, 0.2122, 0.2976], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_CG.gap.json b/pfam_gap_rates/Acetyltransf_CG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..daef95d6419c887af497a9f2272374e634335b2e
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_CG.gap.json
@@ -0,0 +1 @@
+{"family": "Acetyltransf_CG", "n_seqs": 1035, "length": 83, "gap_rates": [0.4714975845410628, 0.2763285024154589, 0.23285024154589373, 0.2028985507246377, 0.18743961352657004, 0.15942028985507245, 0.1536231884057971, 0.6676328502415458, 0.08888888888888889, 0.2589371980676328, 0.0647342995169082, 0.03768115942028986, 0.018357487922705314, 0.017391304347826087, 0.01642512077294686, 0.015458937198067632, 0.015458937198067632, 0.015458937198067632, 0.9420289855072463, 0.9497584541062802, 0.8927536231884058, 0.4792270531400966, 0.02995169082125604, 0.02608695652173913, 0.028019323671497585, 0.00966183574879227, 0.007729468599033816, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.003864734299516908, 0.003864734299516908, 0.003864734299516908, 0.003864734299516908, 0.003864734299516908, 0.004830917874396135, 0.004830917874396135, 0.002898550724637681, 0.002898550724637681, 0.001932367149758454, 0.004830917874396135, 0.002898550724637681, 0.000966183574879227, 0.000966183574879227, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.000966183574879227, 0.000966183574879227, 0.001932367149758454, 0.002898550724637681, 0.002898550724637681, 0.003864734299516908, 0.003864734299516908, 0.003864734299516908, 0.003864734299516908, 0.004830917874396135, 0.007729468599033816, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.00676328502415459, 0.007729468599033816, 0.008695652173913044, 0.008695652173913044, 0.010628019323671498, 0.012560386473429951, 0.01352657004830918, 0.020289855072463767, 0.028985507246376812, 0.057004830917874394, 0.07439613526570048, 0.1323671497584541, 0.1826086956521739, 0.23091787439613526, 0.31980676328502416, 0.4782608695652174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Aconitase.gap.json b/pfam_gap_rates/Aconitase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92719f09d22a8256a34a134cf3a1596de39cdab5
--- /dev/null
+++ b/pfam_gap_rates/Aconitase.gap.json
@@ -0,0 +1 @@
+{"family": "Aconitase", "n_seqs": 5000, "length": 576, "gap_rates": [0.5872, 0.4888, 0.455, 0.3632, 0.3588, 0.351, 0.3398, 0.3418, 0.3236, 0.8158, 0.9204, 0.8656, 0.7944, 0.3098, 0.3128, 0.636, 0.9278, 0.9392, 0.8378, 0.585, 0.2774, 0.252, 0.6582, 0.9056, 0.6146, 0.2124, 0.1966, 0.2008, 0.1896, 0.865, 0.8806, 0.8224, 0.4036, 0.1742, 0.174, 0.1736, 0.1732, 0.172, 0.1718, 0.1712, 0.1708, 0.1708, 0.1724, 0.1716, 0.1744, 0.1722, 0.1716, 0.1704, 0.1702, 0.17, 0.17, 0.1696, 0.1682, 0.168, 0.1684, 0.1684, 0.1682, 0.9006, 0.2864, 0.2856, 0.2856, 0.2852, 0.2836, 0.2836, 0.2834, 0.2828, 0.2818, 0.2698, 0.269, 0.1654, 0.165, 0.1658, 0.1652, 0.1658, 0.1666, 0.6284, 0.603, 0.5858, 0.5114, 0.525, 0.4506, 0.4766, 0.7574, 0.7576, 0.7576, 0.7576, 0.7572, 0.604, 0.599, 0.5878, 0.5812, 0.5298, 0.4802, 0.4368, 0.417, 0.3306, 0.3094, 0.2792, 0.2776, 0.2724, 0.2538, 0.2458, 0.2586, 0.482, 0.423, 0.1748, 0.1636, 0.1572, 0.1494, 0.1476, 0.1786, 0.1744, 0.1416, 0.1384, 0.1364, 0.1356, 0.1348, 0.134, 0.7224, 0.1332, 0.1302, 0.9296, 0.1238, 0.1042, 0.0752, 0.0746, 0.0774, 0.0728, 0.7496, 0.7546, 0.6876, 0.072, 0.072, 0.0718, 0.0716, 0.0718, 0.072, 0.0712, 0.136, 0.0714, 0.0714, 0.0718, 0.7538, 0.7542, 0.7544, 0.7546, 0.8478, 0.886, 0.9076, 0.859, 0.7548, 0.7544, 0.7544, 0.7538, 0.7534, 0.3616, 0.0716, 0.0706, 0.0706, 0.0704, 0.0706, 0.316, 0.0698, 0.0688, 0.069, 0.0682, 0.068, 0.0678, 0.068, 0.068, 0.0676, 0.0674, 0.0974, 0.0656, 0.0652, 0.0652, 0.1418, 0.1422, 0.1426, 0.066, 0.0658, 0.0654, 0.0652, 0.0654, 0.0658, 0.0658, 0.0666, 0.0662, 0.066, 0.066, 0.0662, 0.0666, 0.0664, 0.0664, 0.0664, 0.066, 0.0664, 0.0666, 0.0666, 0.0658, 0.066, 0.0658, 0.0658, 0.0662, 0.0664, 0.0658, 0.066, 0.0666, 0.0664, 0.066, 0.0658, 0.0658, 0.066, 0.0666, 0.0656, 0.0658, 0.0658, 0.0654, 0.0652, 0.0654, 0.0652, 0.065, 0.0648, 0.0652, 0.0648, 0.0646, 0.0654, 0.0658, 0.0656, 0.0664, 0.066, 0.0674, 0.0674, 0.0696, 0.069, 0.0682, 0.0678, 0.929, 0.9306, 0.9392, 0.9294, 0.8908, 0.0676, 0.0674, 0.0666, 0.0662, 0.0662, 0.0766, 0.0966, 0.0958, 0.9402, 0.9388, 0.0664, 0.0686, 0.0664, 0.0666, 0.067, 0.0664, 0.0662, 0.0656, 0.0662, 0.0664, 0.066, 0.0658, 0.0662, 0.0668, 0.0666, 0.0666, 0.0644, 0.0636, 0.0638, 0.064, 0.0642, 0.064, 0.0644, 0.0644, 0.0644, 0.0642, 0.0644, 0.0642, 0.0648, 0.0662, 0.0666, 0.0674, 0.9418, 0.0674, 0.0674, 0.0674, 0.0672, 0.0672, 0.0668, 0.0668, 0.4184, 0.4142, 0.0796, 0.0784, 0.918, 0.9186, 0.9216, 0.9222, 0.9286, 0.926, 0.9222, 0.919, 0.9182, 0.918, 0.0982, 0.1434, 0.1404, 0.1458, 0.64, 0.5902, 0.3546, 0.331, 0.2678, 0.2448, 0.1992, 0.1636, 0.1836, 0.2722, 0.256, 0.2464, 0.2914, 0.2734, 0.6454, 0.2668, 0.94, 0.9266, 0.1472, 0.082, 0.0802, 0.0692, 0.0738, 0.0674, 0.068, 0.0672, 0.0674, 0.0666, 0.0668, 0.0668, 0.0672, 0.0676, 0.0668, 0.0668, 0.0668, 0.0666, 0.0668, 0.067, 0.9344, 0.0674, 0.0676, 0.0676, 0.0674, 0.0674, 0.0678, 0.0682, 0.0678, 0.0678, 0.0682, 0.0688, 0.0694, 0.074, 0.0716, 0.0728, 0.0736, 0.1752, 0.0964, 0.12, 0.1442, 0.3858, 0.7422, 0.6, 0.7728, 0.482, 0.468, 0.4712, 0.4342, 0.4062, 0.3956, 0.504, 0.7952, 0.8168, 0.8362, 0.8422, 0.8508, 0.8926, 0.9256, 0.9274, 0.9274, 0.928, 0.9286, 0.9318, 0.9366, 0.9424, 0.9474, 0.9444, 0.9396, 0.9338, 0.9296, 0.9282, 0.9278, 0.9274, 0.9272, 0.8942, 0.8526, 0.8434, 0.841, 0.8264, 0.799, 0.7918, 0.4956, 0.501, 0.4958, 0.4894, 0.4862, 0.4836, 0.4786, 0.477, 0.477, 0.4752, 0.9488, 0.6304, 0.515, 0.3614, 0.3552, 0.3484, 0.3338, 0.329, 0.3036, 0.2594, 0.191, 0.227, 0.2, 0.1926, 0.069, 0.0682, 0.0676, 0.0676, 0.0672, 0.0672, 0.0672, 0.067, 0.067, 0.067, 0.132, 0.0674, 0.0682, 0.0838, 0.0674, 0.0674, 0.0668, 0.066, 0.0654, 0.0652, 0.0654, 0.0654, 0.0654, 0.0654, 0.0654, 0.7432, 0.6066, 0.5984, 0.5874, 0.5478, 0.5396, 0.0682, 0.0992, 0.0756, 0.0712, 0.069, 0.0778, 0.247, 0.2096, 0.9186, 0.067, 0.066, 0.0654, 0.065, 0.065, 0.065, 0.065, 0.065, 0.0652, 0.0656, 0.0652, 0.0648, 0.0648, 0.064, 0.0644, 0.0644, 0.0642, 0.064, 0.064, 0.0638, 0.0636, 0.0638, 0.0638, 0.0638, 0.064, 0.0638, 0.0636, 0.0636, 0.0636, 0.0638, 0.0642, 0.065, 0.065, 0.0652, 0.065, 0.0652, 0.0654, 0.0652, 0.0652, 0.065, 0.0646, 0.5906, 0.0644, 0.0644, 0.0644, 0.065, 0.0668, 0.0664, 0.651, 0.6922, 0.7756, 0.808, 0.781, 0.7632, 0.662, 0.6474, 0.067, 0.1566, 0.0678, 0.728, 0.8834, 0.742, 0.7272, 0.0666, 0.0666, 0.0668, 0.0664, 0.0664, 0.0668, 0.0668, 0.0668, 0.067, 0.067, 0.0668, 0.0668, 0.067, 0.0674, 0.8954, 0.8632, 0.0678, 0.8488, 0.071, 0.0718, 0.0698, 0.0694, 0.0692, 0.6752, 0.0692, 0.0694, 0.0698, 0.07, 0.07, 0.07, 0.0706, 0.0708, 0.071, 0.0722, 0.0734, 0.079, 0.0918, 0.099, 0.1322], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Activin_recp.gap.json b/pfam_gap_rates/Activin_recp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b047ee542f35c55739b844c4dd5525b3968e4bcc
--- /dev/null
+++ b/pfam_gap_rates/Activin_recp.gap.json
@@ -0,0 +1 @@
+{"family": "Activin_recp", "n_seqs": 317, "length": 104, "gap_rates": [0.6845425867507886, 0.526813880126183, 0.4195583596214511, 0.416403785488959, 0.9463722397476341, 0.9495268138801262, 0.9495268138801262, 0.9463722397476341, 0.8990536277602523, 0.38485804416403785, 0.3659305993690852, 0.30914826498422715, 0.3280757097791798, 0.9495268138801262, 0.5047318611987381, 0.42902208201892744, 0.28391167192429023, 0.1829652996845426, 0.15141955835962145, 0.10725552050473186, 0.08201892744479496, 0.07886435331230283, 0.07570977917981073, 0.07255520504731862, 0.07255520504731862, 0.7917981072555205, 0.917981072555205, 0.7854889589905363, 0.21451104100946372, 0.30914826498422715, 0.45110410094637227, 0.4069400630914827, 0.04100946372239748, 0.031545741324921134, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.022082018927444796, 0.07570977917981073, 0.7854889589905363, 0.8548895899053628, 0.889589905362776, 0.8107255520504731, 0.7381703470031545, 0.15457413249211358, 0.0473186119873817, 0.04416403785488959, 0.028391167192429023, 0.022082018927444796, 0.006309148264984227, 0.0031545741324921135, 0.0, 0.0, 0.0031545741324921135, 0.0, 0.0, 0.0, 0.0, 0.0, 0.17665615141955837, 0.1640378548895899, 0.12302839116719243, 0.3217665615141956, 0.5362776025236593, 0.5331230283911672, 0.4227129337539432, 0.35962145110410093, 0.00946372239747634, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00946372239747634, 0.832807570977918, 0.9274447949526814, 0.7949526813880127, 0.167192429022082, 0.20189274447949526, 0.526813880126183, 0.49842271293375395, 0.2302839116719243, 0.9463722397476341, 0.0694006309148265, 0.028391167192429023, 0.012618296529968454, 0.00946372239747634, 0.006309148264984227, 0.006309148264984227, 0.8738170347003155, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.31545741324921134, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.0473186119873817, 0.21766561514195584], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acyltransf_C.gap.json b/pfam_gap_rates/Acyltransf_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de26400a7a93c24d8314108593f89e8f12f9760a
--- /dev/null
+++ b/pfam_gap_rates/Acyltransf_C.gap.json
@@ -0,0 +1 @@
+{"family": "Acyltransf_C", "n_seqs": 649, "length": 89, "gap_rates": [0.7935285053929122, 0.5346687211093991, 0.4052388289676425, 0.33436055469953774, 0.2526964560862866, 0.5269645608628659, 0.1679506933744222, 0.12942989214175654, 0.11248073959938366, 0.061633281972265024, 0.05238828967642527, 0.05084745762711865, 0.04776579352850539, 0.046224961479198766, 0.04468412942989214, 0.04160246533127889, 0.04160246533127889, 0.03852080123266564, 0.03852080123266564, 0.03389830508474576, 0.032357473035439135, 0.029275808936825885, 0.029275808936825885, 0.02773497688751926, 0.01848998459167951, 0.015408320493066256, 0.7565485362095532, 0.009244992295839754, 0.02465331278890601, 0.01848998459167951, 0.01386748844375963, 0.007704160246533128, 0.0030816640986132513, 0.0030816640986132513, 0.0015408320493066256, 0.0015408320493066256, 0.0015408320493066256, 0.004622496147919877, 0.004622496147919877, 0.009244992295839754, 0.009244992295839754, 0.009244992295839754, 0.01386748844375963, 0.01386748844375963, 0.01694915254237288, 0.020030816640986132, 0.026194144838212634, 0.0662557781201849, 0.08320493066255778, 0.08320493066255778, 0.08936825885978428, 0.9106317411402157, 0.926040061633282, 0.9214175654853621, 0.8613251155624037, 0.10477657935285054, 0.11093990755007704, 0.12326656394453005, 0.13559322033898305, 0.29892141756548535, 0.7426810477657936, 0.8382126348228043, 0.9322033898305084, 0.9491525423728814, 0.884437596302003, 0.8012326656394453, 0.7010785824345146, 0.5408320493066255, 0.38366718027734975, 0.3559322033898305, 0.362095531587057, 0.38366718027734975, 0.41294298921417566, 0.4514637904468413, 0.46841294298921415, 0.522342064714946, 0.864406779661017, 0.5331278890600925, 0.5485362095531587, 0.551617873651772, 0.5608628659476117, 0.5701078582434514, 0.5778120184899846, 0.6055469953775039, 0.6286594761171033, 0.6440677966101694, 0.6656394453004623, 0.7180277349768875, 0.7395993836671803], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acyltransferase.gap.json b/pfam_gap_rates/Acyltransferase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..babac391c0654f2ea83cca12cd7d4e09bdaa3f8f
--- /dev/null
+++ b/pfam_gap_rates/Acyltransferase.gap.json
@@ -0,0 +1 @@
+{"family": "Acyltransferase", "n_seqs": 5000, "length": 183, "gap_rates": [0.912, 0.6644, 0.5322, 0.4672, 0.4272, 0.3894, 0.397, 0.3286, 0.292, 0.2638, 0.236, 0.2168, 0.9176, 0.943, 0.872, 0.2264, 0.0828, 0.0622, 0.0534, 0.0462, 0.0386, 0.0376, 0.0356, 0.0338, 0.0336, 0.033, 0.0326, 0.0318, 0.8778, 0.0292, 0.0288, 0.029, 0.0292, 0.031, 0.0292, 0.0284, 0.0264, 0.0764, 0.079, 0.5658, 0.5464, 0.5344, 0.5232, 0.8298, 0.235, 0.9384, 0.9276, 0.0922, 0.0308, 0.0248, 0.0248, 0.0244, 0.0212, 0.0208, 0.0198, 0.0218, 0.0226, 0.0686, 0.0408, 0.0454, 0.0908, 0.8698, 0.0368, 0.0312, 0.0198, 0.0174, 0.018, 0.0198, 0.0202, 0.023, 0.9452, 0.0244, 0.0246, 0.0292, 0.0238, 0.0192, 0.0188, 0.0186, 0.0186, 0.0188, 0.821, 0.8824, 0.907, 0.9204, 0.938, 0.9294, 0.9136, 0.8916, 0.8486, 0.789, 0.4048, 0.2696, 0.1756, 0.1176, 0.1036, 0.0778, 0.0614, 0.0546, 0.0506, 0.0496, 0.0186, 0.0206, 0.0216, 0.0268, 0.0214, 0.9324, 0.8332, 0.0216, 0.0224, 0.0234, 0.023, 0.0282, 0.9436, 0.9282, 0.0168, 0.0174, 0.7714, 0.0226, 0.0296, 0.0166, 0.018, 0.0214, 0.0218, 0.0222, 0.0232, 0.0264, 0.0286, 0.0296, 0.031, 0.8524, 0.8742, 0.8986, 0.908, 0.9164, 0.9306, 0.9326, 0.934, 0.9452, 0.9346, 0.9334, 0.932, 0.9282, 0.9104, 0.907, 0.8888, 0.8676, 0.834, 0.093, 0.11, 0.0902, 0.8662, 0.762, 0.0642, 0.0506, 0.048, 0.049, 0.0504, 0.0522, 0.0532, 0.0558, 0.0602, 0.0638, 0.1222, 0.1258, 0.1312, 0.1366, 0.7372, 0.809, 0.8576, 0.8888, 0.8194, 0.8002, 0.7236, 0.1332, 0.1316, 0.1318, 0.1364, 0.1532, 0.1762, 0.1848, 0.2252, 0.382, 0.9292], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alba.gap.json b/pfam_gap_rates/Alba.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a11f58b35821105e7f6d438e27cab95c15f13ac5
--- /dev/null
+++ b/pfam_gap_rates/Alba.gap.json
@@ -0,0 +1 @@
+{"family": "Alba", "n_seqs": 674, "length": 75, "gap_rates": [0.42729970326409494, 0.18545994065281898, 0.11869436201780416, 0.09940652818991098, 0.0771513353115727, 0.07863501483679525, 0.07418397626112759, 0.8264094955489614, 0.1913946587537092, 0.06083086053412463, 0.06083086053412463, 0.05341246290801187, 0.03857566765578635, 0.03857566765578635, 0.03560830860534125, 0.03560830860534125, 0.03560830860534125, 0.032640949554896145, 0.03115727002967359, 0.028189910979228485, 0.02373887240356083, 0.020771513353115726, 0.017804154302670624, 0.8635014836795252, 0.8916913946587537, 0.9406528189910979, 0.9495548961424333, 0.9228486646884273, 0.884272997032641, 0.857566765578635, 0.47477744807121663, 0.27596439169139464, 0.02225519287833828, 0.00741839762611276, 0.005934718100890208, 0.004451038575667656, 0.004451038575667656, 0.004451038575667656, 0.004451038575667656, 0.004451038575667656, 0.004451038575667656, 0.004451038575667656, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002967359050445104, 0.004451038575667656, 0.005934718100890208, 0.005934718100890208, 0.005934718100890208, 0.005934718100890208, 0.005934718100890208, 0.00741839762611276, 0.011869436201780416, 0.011869436201780416, 0.013353115727002967, 0.019287833827893175, 0.025222551928783383, 0.5103857566765578, 0.2522255192878338, 0.9376854599406528, 0.16913946587537093, 0.20029673590504452, 0.14540059347181009, 0.1201780415430267, 0.14688427299703263, 0.17359050445103857, 0.23738872403560832, 0.27596439169139464, 0.3560830860534125, 0.4792284866468843, 0.6617210682492581], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alfin.gap.json b/pfam_gap_rates/Alfin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82728ea947ec565b3b198fd0999a5780e5c745bc
--- /dev/null
+++ b/pfam_gap_rates/Alfin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Alliinase_C.gap.json b/pfam_gap_rates/Alliinase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..84edf7336ba82d9b2045882203a804a94ee7b068
--- /dev/null
+++ b/pfam_gap_rates/Alliinase_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Amidinotransf.gap.json b/pfam_gap_rates/Amidinotransf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..942c13f36c35be733e1d61596302442984ab3450
--- /dev/null
+++ b/pfam_gap_rates/Amidinotransf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Aminotran_3.gap.json b/pfam_gap_rates/Aminotran_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ceb8c2b56403b9f8cfa7e7507ff800c67dc46b6e
--- /dev/null
+++ b/pfam_gap_rates/Aminotran_3.gap.json
@@ -0,0 +1 @@
+{"family": "Aminotran_3", "n_seqs": 5000, "length": 451, "gap_rates": [0.9246, 0.9062, 0.8842, 0.8452, 0.7944, 0.7094, 0.5928, 0.406, 0.2126, 0.1562, 0.1328, 0.1204, 0.1122, 0.1046, 0.1032, 0.102, 0.1006, 0.0992, 0.0984, 0.098, 0.0976, 0.0968, 0.0954, 0.0952, 0.0944, 0.0918, 0.089, 0.0834, 0.0812, 0.0812, 0.0822, 0.0824, 0.0824, 0.0984, 0.0986, 0.0812, 0.0812, 0.08, 0.0786, 0.0782, 0.0784, 0.0788, 0.0792, 0.0792, 0.0788, 0.0796, 0.0798, 0.0794, 0.0792, 0.0788, 0.079, 0.0796, 0.0794, 0.0802, 0.0796, 0.0794, 0.0806, 0.2088, 0.204, 0.0902, 0.0954, 0.486, 0.145, 0.1178, 0.0832, 0.0862, 0.0866, 0.083, 0.0884, 0.1194, 0.1066, 0.0854, 0.0788, 0.0778, 0.0778, 0.078, 0.0778, 0.9454, 0.936, 0.0782, 0.0826, 0.0814, 0.0804, 0.0792, 0.0814, 0.48, 0.3098, 0.08, 0.944, 0.8682, 0.076, 0.075, 0.0746, 0.0746, 0.0726, 0.0724, 0.0722, 0.072, 0.0718, 0.0718, 0.0718, 0.072, 0.0718, 0.072, 0.0724, 0.0724, 0.0726, 0.0722, 0.0726, 0.073, 0.073, 0.5456, 0.5454, 0.5456, 0.5452, 0.538, 0.5736, 0.909, 0.8888, 0.0944, 0.0802, 0.0798, 0.0802, 0.0752, 0.075, 0.0748, 0.0742, 0.0744, 0.0744, 0.0812, 0.0816, 0.0754, 0.0764, 0.0774, 0.0776, 0.0814, 0.0832, 0.0848, 0.0874, 0.0856, 0.0856, 0.0848, 0.0844, 0.0844, 0.0846, 0.0856, 0.789, 0.2736, 0.1194, 0.1078, 0.0992, 0.0974, 0.098, 0.0968, 0.0954, 0.1022, 0.1076, 0.9318, 0.902, 0.1022, 0.0972, 0.0942, 0.0934, 0.0934, 0.0916, 0.0928, 0.092, 0.0918, 0.0922, 0.114, 0.3908, 0.387, 0.3852, 0.4018, 0.4128, 0.407, 0.4002, 0.3912, 0.8738, 0.9222, 0.8916, 0.8404, 0.5768, 0.5614, 0.5366, 0.5274, 0.521, 0.5062, 0.329, 0.3162, 0.3074, 0.099, 0.0964, 0.097, 0.1202, 0.1304, 0.7792, 0.8834, 0.822, 0.616, 0.136, 0.0968, 0.082, 0.081, 0.0798, 0.0798, 0.0802, 0.0794, 0.079, 0.0784, 0.078, 0.0782, 0.0782, 0.0782, 0.889, 0.0782, 0.079, 0.0822, 0.0858, 0.0958, 0.0926, 0.0854, 0.0802, 0.0806, 0.0768, 0.0754, 0.0748, 0.0746, 0.0742, 0.0736, 0.0742, 0.0742, 0.0742, 0.074, 0.0744, 0.0746, 0.0752, 0.0744, 0.0744, 0.0748, 0.0738, 0.0732, 0.0704, 0.0676, 0.0678, 0.0676, 0.0678, 0.0678, 0.068, 0.0676, 0.0682, 0.0708, 0.0696, 0.8694, 0.8464, 0.08, 0.0704, 0.0694, 0.0704, 0.2206, 0.1948, 0.188, 0.072, 0.07, 0.0704, 0.0902, 0.083, 0.92, 0.8876, 0.0664, 0.0656, 0.0654, 0.0656, 0.0658, 0.0658, 0.0652, 0.0648, 0.0648, 0.0648, 0.0648, 0.0646, 0.0648, 0.0658, 0.0668, 0.0666, 0.6154, 0.0674, 0.0668, 0.0666, 0.0678, 0.0672, 0.0674, 0.0678, 0.0678, 0.0682, 0.0718, 0.0712, 0.0816, 0.0914, 0.075, 0.0728, 0.071, 0.1314, 0.1072, 0.096, 0.0932, 0.5162, 0.7136, 0.8204, 0.8806, 0.7758, 0.5734, 0.495, 0.0926, 0.0912, 0.0672, 0.0668, 0.0666, 0.0662, 0.0658, 0.0658, 0.066, 0.0656, 0.0652, 0.0652, 0.0656, 0.0658, 0.0656, 0.0658, 0.0654, 0.0654, 0.0654, 0.0646, 0.0654, 0.0656, 0.0706, 0.0804, 0.9412, 0.0798, 0.0748, 0.076, 0.083, 0.0764, 0.076, 0.0738, 0.0748, 0.0744, 0.075, 0.0752, 0.0754, 0.0756, 0.0752, 0.076, 0.0756, 0.077, 0.077, 0.077, 0.0784, 0.0802, 0.087, 0.1316, 0.1312, 0.204, 0.8448, 0.3924, 0.1148, 0.1044, 0.103, 0.0986, 0.0974, 0.098, 0.0986, 0.0984, 0.0984, 0.099, 0.1002, 0.1022, 0.102, 0.103, 0.1578, 0.1078, 0.1098, 0.113, 0.1122, 0.1136, 0.1146, 0.3208, 0.3068, 0.3846, 0.4802, 0.5234, 0.5992, 0.7136, 0.8132, 0.8564, 0.9488, 0.8242, 0.7228, 0.6776, 0.5584, 0.4944, 0.4628, 0.333, 0.1406, 0.1258, 0.1262, 0.1246, 0.1254, 0.126, 0.125, 0.1258, 0.1266, 0.1266, 0.127, 0.128, 0.147, 0.1486, 0.1536, 0.1768, 0.1904, 0.4038, 0.7938, 0.9494, 0.7594, 0.2304, 0.2246, 0.2266, 0.225, 0.2236, 0.2116, 0.2148, 0.218, 0.2214, 0.2218, 0.2208, 0.219, 0.2194, 0.2208, 0.2224, 0.2232, 0.2246, 0.2264, 0.2282, 0.2336, 0.2388, 0.247, 0.2634, 0.296, 0.3478, 0.449, 0.664], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Apocytochr_F_C.gap.json b/pfam_gap_rates/Apocytochr_F_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a20a1f53b8a752d18c0f0a0c8ff3b49e9f3862b6
--- /dev/null
+++ b/pfam_gap_rates/Apocytochr_F_C.gap.json
@@ -0,0 +1 @@
+{"family": "Apocytochr_F_C", "n_seqs": 127, "length": 124, "gap_rates": [0.12598425196850394, 0.12598425196850394, 0.12598425196850394, 0.12598425196850394, 0.12598425196850394, 0.12598425196850394, 0.12598425196850394, 0.12598425196850394, 0.12598425196850394, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.13385826771653545, 0.11811023622047244, 0.11811023622047244, 0.9133858267716536, 0.16535433070866143, 0.9212598425196851, 0.9212598425196851, 0.9212598425196851, 0.9133858267716536, 0.10236220472440945, 0.07874015748031496, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.6614173228346457, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.09448818897637795, 0.11811023622047244, 0.07086614173228346, 0.07874015748031496, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.06299212598425197, 0.05511811023622047, 0.047244094488188976, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.03937007874015748, 0.03937007874015748, 0.031496062992125984, 0.031496062992125984, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.015748031496062992, 0.023622047244094488, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.09448818897637795, 0.10236220472440945, 0.11811023622047244, 0.11811023622047244, 0.12598425196850394, 0.1732283464566929, 0.1889763779527559, 0.2125984251968504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Apolipoprotein.gap.json b/pfam_gap_rates/Apolipoprotein.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aefc4d973bf8844f629df414093930a1fa338a2b
--- /dev/null
+++ b/pfam_gap_rates/Apolipoprotein.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Arabinose_trans.gap.json b/pfam_gap_rates/Arabinose_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de413987137ccb9264f9f599f8b4b9e21fa69de6
--- /dev/null
+++ b/pfam_gap_rates/Arabinose_trans.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Arg_repressor.gap.json b/pfam_gap_rates/Arg_repressor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b542b4d035a69ac0f3ca628eda27771e5eaec4af
--- /dev/null
+++ b/pfam_gap_rates/Arg_repressor.gap.json
@@ -0,0 +1 @@
+{"family": "Arg_repressor", "n_seqs": 895, "length": 72, "gap_rates": [0.735195530726257, 0.45139664804469276, 0.06927374301675977, 0.049162011173184354, 0.035754189944134075, 0.027932960893854747, 0.02569832402234637, 0.02011173184357542, 0.012290502793296089, 0.00782122905027933, 0.0067039106145251395, 0.0067039106145251395, 0.0067039106145251395, 0.0067039106145251395, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.004469273743016759, 0.004469273743016759, 0.004469273743016759, 0.004469273743016759, 0.004469273743016759, 0.0033519553072625698, 0.0033519553072625698, 0.0033519553072625698, 0.0033519553072625698, 0.0033519553072625698, 0.0033519553072625698, 0.0011173184357541898, 0.0011173184357541898, 0.0011173184357541898, 0.0011173184357541898, 0.0011173184357541898, 0.0011173184357541898, 0.0, 0.9251396648044693, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011173184357541898, 0.0011173184357541898, 0.0011173184357541898, 0.0011173184357541898, 0.0011173184357541898, 0.0022346368715083797, 0.0033519553072625698, 0.004469273743016759, 0.0067039106145251395, 0.008938547486033519, 0.0111731843575419, 0.9396648044692737, 0.09832402234636871, 0.05027932960893855, 0.049162011173184354, 0.05251396648044693, 0.04357541899441341, 0.035754189944134075, 0.03687150837988827, 0.03798882681564246, 0.042458100558659215, 0.09385474860335195, 0.12067039106145251, 0.16201117318435754, 0.28938547486033517, 0.43687150837988825, 0.6614525139664804, 0.924022346368715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arm_2.gap.json b/pfam_gap_rates/Arm_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5dad05effddee8956994430c7a592f8b8ba2a11
--- /dev/null
+++ b/pfam_gap_rates/Arm_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ArsA_ATPase.gap.json b/pfam_gap_rates/ArsA_ATPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..feafe583eb9f55b3aebdc57fb566a3d9586235da
--- /dev/null
+++ b/pfam_gap_rates/ArsA_ATPase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ArsC.gap.json b/pfam_gap_rates/ArsC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8383fa30051977b4a316c74764e2260fe25b551
--- /dev/null
+++ b/pfam_gap_rates/ArsC.gap.json
@@ -0,0 +1 @@
+{"family": "ArsC", "n_seqs": 2030, "length": 112, "gap_rates": [0.5620689655172414, 0.5221674876847291, 0.5, 0.4891625615763547, 0.20788177339901479, 0.21330049261083744, 0.21724137931034482, 0.23251231527093597, 0.24285714285714285, 0.25911330049261083, 0.27586206896551724, 0.2995073891625616, 0.316256157635468, 0.3724137931034483, 0.39458128078817734, 0.4059113300492611, 0.4241379310344828, 0.42807881773399015, 0.43399014778325123, 0.4413793103448276, 0.4487684729064039, 0.458128078817734, 0.46157635467980296, 0.4669950738916256, 0.4729064039408867, 0.47635467980295565, 0.6389162561576355, 0.6463054187192119, 0.483743842364532, 0.47339901477832513, 0.4724137931034483, 0.4645320197044335, 0.45960591133004924, 0.45615763546798027, 0.44433497536945815, 0.43645320197044335, 0.43004926108374386, 0.4246305418719212, 0.4088669950738916, 0.4009852216748768, 0.37783251231527093, 0.3645320197044335, 0.31133004926108376, 0.28374384236453204, 0.27241379310344827, 0.25024630541871923, 0.24088669950738917, 0.22118226600985222, 0.21428571428571427, 0.21330049261083744, 0.11724137931034483, 0.10640394088669951, 0.08029556650246306, 0.07586206896551724, 0.06896551724137931, 0.06403940886699508, 0.06305418719211822, 0.06354679802955665, 0.06256157635467981, 0.061083743842364535, 0.059113300492610835, 0.05812807881773399, 0.05714285714285714, 0.06403940886699508, 0.7487684729064039, 0.6024630541871921, 0.05024630541871921, 0.09901477832512315, 0.07536945812807881, 0.039901477832512314, 0.03300492610837438, 0.06995073891625615, 0.02857142857142857, 0.022167487684729065, 0.00935960591133005, 0.007389162561576354, 0.008866995073891626, 0.00935960591133005, 0.007881773399014778, 0.0034482758620689655, 0.0009852216748768472, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.0004926108374384236, 0.002955665024630542, 0.0034482758620689655, 0.007881773399014778, 0.006896551724137931, 0.9108374384236453, 0.007881773399014778, 0.01083743842364532, 0.011822660098522168, 0.013300492610837438, 0.019704433497536946, 0.025123152709359605, 0.034482758620689655, 0.046798029556650245, 0.06798029556650247, 0.09064039408866995, 0.15566502463054188, 0.3251231527093596, 0.7246305418719212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arylsulfotrans.gap.json b/pfam_gap_rates/Arylsulfotrans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b570422deaf4389d5dcfb29fd39820ff0ea811f
--- /dev/null
+++ b/pfam_gap_rates/Arylsulfotrans.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Asp_Arg_Hydrox.gap.json b/pfam_gap_rates/Asp_Arg_Hydrox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..489b0e63c7fba7fc2c2d177dc31c105e820d6663
--- /dev/null
+++ b/pfam_gap_rates/Asp_Arg_Hydrox.gap.json
@@ -0,0 +1 @@
+{"family": "Asp_Arg_Hydrox", "n_seqs": 511, "length": 205, "gap_rates": [0.6360078277886497, 0.41682974559686886, 0.350293542074364, 0.32093933463796476, 0.30332681017612523, 0.2896281800391389, 0.27788649706457924, 0.2759295499021526, 0.2700587084148728, 0.2700587084148728, 0.2700587084148728, 0.26810176125244617, 0.26810176125244617, 0.26810176125244617, 0.2720156555772994, 0.4070450097847358, 0.9275929549902152, 0.8277886497064579, 0.38943248532289626, 0.30919765166340507, 0.29354207436399216, 0.273972602739726, 0.26614481409001955, 0.26614481409001955, 0.2876712328767123, 0.26810176125244617, 0.2563600782778865, 0.2446183953033268, 0.23679060665362034, 0.23483365949119372, 0.23483365949119372, 0.23874755381604695, 0.24853228962818003, 0.3111545988258317, 0.30528375733855184, 0.38551859099804303, 0.48532289628180036, 0.38943248532289626, 0.6066536203522505, 0.7318982387475538, 0.8336594911937377, 0.8806262230919765, 0.9393346379647749, 0.9060665362035225, 0.8610567514677103, 0.8140900195694716, 0.6223091976516634, 0.5909980430528375, 0.19569471624266144, 0.18395303326810175, 0.16829745596868884, 0.16829745596868884, 0.16829745596868884, 0.16634050880626222, 0.16634050880626222, 0.17221135029354206, 0.16829745596868884, 0.16046966731898238, 0.8806262230919765, 0.8923679060665362, 0.9021526418786693, 0.9021526418786693, 0.913894324853229, 0.9178082191780822, 0.9354207436399217, 0.9471624266144814, 0.9217221135029354, 0.9158512720156555, 0.9119373776908023, 0.9021526418786693, 0.9021526418786693, 0.8864970645792564, 0.8747553816046967, 0.15655577299412915, 0.17221135029354206, 0.15264187866927592, 0.14481409001956946, 0.14285714285714285, 0.136986301369863, 0.13111545988258316, 0.12720156555772993, 0.12524461839530332, 0.12133072407045009, 0.12133072407045009, 0.12133072407045009, 0.11937377690802348, 0.11937377690802348, 0.11937377690802348, 0.11350293542074363, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.5694716242661448, 0.15851272015655576, 0.2857142857142857, 0.9452054794520548, 0.42857142857142855, 0.3131115459882583, 0.30919765166340507, 0.5792563600782779, 0.5048923679060665, 0.44031311154598823, 0.3913894324853229, 0.33659491193737767, 0.32289628180039137, 0.3131115459882583, 0.046966731898238745, 0.043052837573385516, 0.046966731898238745, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.03913894324853229, 0.03913894324853229, 0.03718199608610567, 0.03718199608610567, 0.03718199608610567, 0.03718199608610567, 0.03522504892367906, 0.03522504892367906, 0.03718199608610567, 0.03913894324853229, 0.8904109589041096, 0.9001956947162426, 0.8845401174168297, 0.06653620352250489, 0.06653620352250489, 0.06262230919765166, 0.050880626223091974, 0.0547945205479452, 0.04500978473581213, 0.9158512720156555, 0.9432485322896281, 0.9158512720156555, 0.9080234833659491, 0.043052837573385516, 0.04500978473581213, 0.04500978473581213, 0.04500978473581213, 0.04500978473581213, 0.046966731898238745, 0.04500978473581213, 0.046966731898238745, 0.04500978473581213, 0.8414872798434442, 0.9080234833659491, 0.786692759295499, 0.043052837573385516, 0.043052837573385516, 0.7632093933463796, 0.9197651663405088, 0.9393346379647749, 0.9334637964774951, 0.8825831702544031, 0.7064579256360078, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.03913894324853229, 0.03913894324853229, 0.03913894324853229, 0.03718199608610567, 0.033268101761252444, 0.033268101761252444, 0.033268101761252444, 0.029354207436399216, 0.029354207436399216, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.03131115459882583, 0.03131115459882583, 0.03131115459882583, 0.03131115459882583, 0.03131115459882583, 0.03131115459882583, 0.03131115459882583, 0.03131115459882583, 0.03131115459882583, 0.03131115459882583, 0.033268101761252444, 0.03522504892367906, 0.03913894324853229, 0.043052837573385516, 0.03913894324853229, 0.9001956947162426, 0.9041095890410958, 0.8493150684931506, 0.03913894324853229, 0.046966731898238745, 0.0410958904109589, 0.04500978473581213, 0.04500978473581213, 0.04500978473581213, 0.04500978473581213, 0.046966731898238745, 0.04892367906066536, 0.05283757338551859, 0.05675146771037182, 0.14090019569471623, 0.22113502935420742, 0.2759295499021526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Asp_protease.gap.json b/pfam_gap_rates/Asp_protease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4cddf41040701e582bb031b962d7dfcd5e6830f7
--- /dev/null
+++ b/pfam_gap_rates/Asp_protease.gap.json
@@ -0,0 +1 @@
+{"family": "Asp_protease", "n_seqs": 333, "length": 125, "gap_rates": [0.5255255255255256, 0.2552552552552553, 0.23423423423423423, 0.22522522522522523, 0.21921921921921922, 0.21021021021021022, 0.2012012012012012, 0.1981981981981982, 0.19519519519519518, 0.1921921921921922, 0.1891891891891892, 0.18018018018018017, 0.17717717717717718, 0.17417417417417416, 0.17117117117117117, 0.17117117117117117, 0.17117117117117117, 0.16516516516516516, 0.15615615615615616, 0.14714714714714713, 0.14414414414414414, 0.13513513513513514, 0.11411411411411411, 0.08708708708708708, 0.08708708708708708, 0.08708708708708708, 0.08708708708708708, 0.08708708708708708, 0.08708708708708708, 0.08708708708708708, 0.09309309309309309, 0.08108108108108109, 0.06906906906906907, 0.06606606606606606, 0.06606606606606606, 0.06606606606606606, 0.06606606606606606, 0.06906906906906907, 0.06906906906906907, 0.06606606606606606, 0.06606606606606606, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06606606606606606, 0.07807807807807808, 0.07807807807807808, 0.08108108108108109, 0.08108108108108109, 0.08708708708708708, 0.08408408408408409, 0.08408408408408409, 0.08408408408408409, 0.09009009009009009, 0.09009009009009009, 0.08708708708708708, 0.09009009009009009, 0.09009009009009009, 0.08408408408408409, 0.08108108108108109, 0.1021021021021021, 0.10510510510510511, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.08408408408408409, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08408408408408409, 0.08108108108108109, 0.09009009009009009, 0.08708708708708708, 0.0960960960960961, 0.8678678678678678, 0.0990990990990991, 0.08708708708708708, 0.09309309309309309, 0.08708708708708708, 0.08708708708708708, 0.08708708708708708, 0.08708708708708708, 0.08408408408408409, 0.08408408408408409, 0.08708708708708708, 0.09009009009009009, 0.07207207207207207, 0.07507507507507508, 0.07807807807807808, 0.07807807807807808, 0.08108108108108109, 0.08108108108108109, 0.07807807807807808, 0.07807807807807808, 0.07807807807807808, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08408408408408409, 0.08408408408408409, 0.08408408408408409, 0.08708708708708708, 0.08708708708708708, 0.13513513513513514, 0.10510510510510511, 0.0960960960960961, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09309309309309309, 0.09309309309309309, 0.09309309309309309, 0.0990990990990991, 0.0990990990990991, 0.1021021021021021, 0.1021021021021021, 0.1111111111111111, 0.1111111111111111, 0.11411411411411411, 0.11411411411411411, 0.12012012012012012, 0.12612612612612611, 0.12912912912912913, 0.16216216216216217], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Aspzincin_M35.gap.json b/pfam_gap_rates/Aspzincin_M35.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b20042f9ace219d96539c141e2ae0c85b87a5a6b
--- /dev/null
+++ b/pfam_gap_rates/Aspzincin_M35.gap.json
@@ -0,0 +1 @@
+{"family": "Aspzincin_M35", "n_seqs": 320, "length": 168, "gap_rates": [0.88125, 0.73125, 0.59375, 0.5125, 0.390625, 0.334375, 0.265625, 0.2125, 0.184375, 0.178125, 0.16875, 0.14375, 0.125, 0.121875, 0.115625, 0.115625, 0.1375, 0.15, 0.134375, 0.128125, 0.146875, 0.134375, 0.115625, 0.1, 0.096875, 0.096875, 0.090625, 0.090625, 0.090625, 0.090625, 0.090625, 0.090625, 0.090625, 0.084375, 0.090625, 0.265625, 0.765625, 0.78125, 0.7625, 0.328125, 0.171875, 0.075, 0.071875, 0.071875, 0.075, 0.071875, 0.071875, 0.084375, 0.084375, 0.0875, 0.346875, 0.884375, 0.934375, 0.734375, 0.696875, 0.434375, 0.4125, 0.078125, 0.08125, 0.875, 0.91875, 0.56875, 0.0625, 0.059375, 0.05, 0.946875, 0.940625, 0.05, 0.05, 0.05, 0.05, 0.040625, 0.834375, 0.925, 0.89375, 0.765625, 0.034375, 0.040625, 0.04375, 0.31875, 0.028125, 0.021875, 0.021875, 0.021875, 0.01875, 0.021875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.940625, 0.13125, 0.128125, 0.59375, 0.578125, 0.553125, 0.471875, 0.409375, 0.0625, 0.040625, 0.034375, 0.89375, 0.89375, 0.928125, 0.95, 0.909375, 0.89375, 0.89375, 0.05, 0.084375, 0.828125, 0.209375, 0.03125, 0.028125, 0.028125, 0.03125, 0.03125, 0.028125, 0.03125, 0.03125, 0.03125, 0.034375, 0.034375, 0.0375, 0.0375, 0.484375, 0.484375, 0.915625, 0.94375, 0.90625, 0.096875, 0.04375, 0.040625, 0.040625, 0.0375, 0.040625, 0.921875, 0.04375, 0.04375, 0.04375, 0.05625, 0.05625, 0.06875, 0.06875, 0.071875, 0.06875, 0.071875, 0.278125, 0.26875, 0.265625, 0.08125, 0.08125, 0.08125, 0.0875, 0.0875, 0.090625, 0.09375, 0.090625, 0.096875, 0.1, 0.115625, 0.115625, 0.11875, 0.1375, 0.19375, 0.225, 0.446875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AstB.gap.json b/pfam_gap_rates/AstB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2795d9e7f5ea3137e227d06f02cb902bfbc6d3c2
--- /dev/null
+++ b/pfam_gap_rates/AstB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Auxin_repressed.gap.json b/pfam_gap_rates/Auxin_repressed.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..428db328cc80b749775c6b979bf40647a1a952ca
--- /dev/null
+++ b/pfam_gap_rates/Auxin_repressed.gap.json
@@ -0,0 +1 @@
+{"family": "Auxin_repressed", "n_seqs": 123, "length": 167, "gap_rates": [0.07317073170731707, 0.07317073170731707, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.08130081300813008, 0.9024390243902439, 0.9105691056910569, 0.5691056910569106, 0.10569105691056911, 0.10569105691056911, 0.08943089430894309, 0.0975609756097561, 0.9186991869918699, 0.12195121951219512, 0.10569105691056911, 0.11382113821138211, 0.6178861788617886, 0.6585365853658537, 0.6829268292682927, 0.7235772357723578, 0.8211382113821138, 0.8861788617886179, 0.926829268292683, 0.926829268292683, 0.9186991869918699, 0.8617886178861789, 0.7642276422764228, 0.7154471544715447, 0.6585365853658537, 0.6422764227642277, 0.5609756097560976, 0.2601626016260163, 0.2032520325203252, 0.17886178861788618, 0.16260162601626016, 0.16260162601626016, 0.15447154471544716, 0.35772357723577236, 0.2764227642276423, 0.17886178861788618, 0.17073170731707318, 0.13821138211382114, 0.12195121951219512, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.6097560975609756, 0.7723577235772358, 0.8373983739837398, 0.8536585365853658, 0.8699186991869918, 0.9024390243902439, 0.9186991869918699, 0.9349593495934959, 0.943089430894309, 0.926829268292683, 0.9024390243902439, 0.8861788617886179, 0.8699186991869918, 0.8455284552845529, 0.8130081300813008, 0.7235772357723578, 0.6097560975609756, 0.13008130081300814, 0.8211382113821138, 0.8455284552845529, 0.9024390243902439, 0.943089430894309, 0.8617886178861789, 0.8455284552845529, 0.7723577235772358, 0.3089430894308943, 0.3008130081300813, 0.2764227642276423, 0.17886178861788618, 0.16260162601626016, 0.14634146341463414, 0.13821138211382114, 0.14634146341463414, 0.12195121951219512, 0.11382113821138211, 0.13008130081300814, 0.13008130081300814, 0.16260162601626016, 0.9186991869918699, 0.3008130081300813, 0.4796747967479675, 0.4065040650406504, 0.2845528455284553, 0.943089430894309, 0.9105691056910569, 0.44715447154471544, 0.37398373983739835, 0.37398373983739835, 0.3902439024390244, 0.3902439024390244, 0.37398373983739835, 0.36585365853658536, 0.37398373983739835, 0.3821138211382114, 0.3821138211382114, 0.3902439024390244, 0.42276422764227645, 0.4065040650406504, 0.3902439024390244, 0.3983739837398374, 0.4065040650406504, 0.4146341463414634, 0.42276422764227645, 0.9105691056910569, 0.9024390243902439, 0.4065040650406504, 0.4146341463414634, 0.43089430894308944, 0.43902439024390244, 0.42276422764227645, 0.42276422764227645, 0.4146341463414634, 0.4146341463414634, 0.4146341463414634, 0.4715447154471545, 0.4634146341463415, 0.42276422764227645, 0.42276422764227645, 0.42276422764227645, 0.42276422764227645, 0.8617886178861789, 0.42276422764227645, 0.42276422764227645, 0.44715447154471544, 0.4634146341463415, 0.4634146341463415, 0.4634146341463415, 0.4634146341463415, 0.4634146341463415, 0.4634146341463415, 0.5284552845528455, 0.7073170731707317, 0.7235772357723578, 0.7317073170731707, 0.7317073170731707, 0.7479674796747967, 0.7479674796747967, 0.7560975609756098, 0.7560975609756098, 0.7804878048780488, 0.8130081300813008], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AzlC.gap.json b/pfam_gap_rates/AzlC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..277386df6878afb0c5d14aeec8ac6876b03cd432
--- /dev/null
+++ b/pfam_gap_rates/AzlC.gap.json
@@ -0,0 +1 @@
+{"family": "AzlC", "n_seqs": 1298, "length": 152, "gap_rates": [0.27349768875192604, 0.11171032357473036, 0.08243451463790447, 0.06394453004622497, 0.05238828967642527, 0.03775038520801233, 0.032357473035439135, 0.030816640986132512, 0.02773497688751926, 0.026194144838212634, 0.023882896764252697, 0.023112480739599383, 0.023112480739599383, 0.02234206471494607, 0.02234206471494607, 0.02234206471494607, 0.020801232665639446, 0.023112480739599383, 0.023112480739599383, 0.020801232665639446, 0.01926040061633282, 0.017719568567026195, 0.017719568567026195, 0.017719568567026195, 0.017719568567026195, 0.017719568567026195, 0.016178736517719568, 0.016178736517719568, 0.016178736517719568, 0.014637904468412942, 0.014637904468412942, 0.014637904468412942, 0.014637904468412942, 0.014637904468412942, 0.014637904468412942, 0.014637904468412942, 0.014637904468412942, 0.014637904468412942, 0.014637904468412942, 0.01386748844375963, 0.014637904468412942, 0.014637904468412942, 0.01386748844375963, 0.01386748844375963, 0.014637904468412942, 0.013097072419106317, 0.013097072419106317, 0.013097072419106317, 0.04314329738058552, 0.01848998459167951, 0.014637904468412942, 0.9414483821263482, 0.01386748844375963, 0.012326656394453005, 0.011556240369799691, 0.011556240369799691, 0.012326656394453005, 0.012326656394453005, 0.010015408320493066, 0.010015408320493066, 0.01078582434514638, 0.01078582434514638, 0.01078582434514638, 0.011556240369799691, 0.011556240369799691, 0.011556240369799691, 0.011556240369799691, 0.011556240369799691, 0.011556240369799691, 0.011556240369799691, 0.012326656394453005, 0.012326656394453005, 0.012326656394453005, 0.013097072419106317, 0.013097072419106317, 0.013097072419106317, 0.012326656394453005, 0.012326656394453005, 0.012326656394453005, 0.9244992295839753, 0.05007704160246533, 0.05007704160246533, 0.9198767334360555, 0.2665639445300462, 0.046224961479198766, 0.01926040061633282, 0.017719568567026195, 0.016178736517719568, 0.01848998459167951, 0.023112480739599383, 0.015408320493066256, 0.014637904468412942, 0.014637904468412942, 0.015408320493066256, 0.014637904468412942, 0.01386748844375963, 0.01386748844375963, 0.01386748844375963, 0.01386748844375963, 0.01386748844375963, 0.01386748844375963, 0.01386748844375963, 0.01386748844375963, 0.01386748844375963, 0.9468412942989214, 0.01386748844375963, 0.029275808936825885, 0.01926040061633282, 0.07164869029275808, 0.4206471494607088, 0.7688751926040062, 0.9275808936825886, 0.9345146379044684, 0.8636363636363636, 0.6248073959938367, 0.23651771956856701, 0.03697996918335902, 0.01848998459167951, 0.14637904468412943, 0.016178736517719568, 0.9098613251155624, 0.9322033898305084, 0.7681047765793528, 0.016178736517719568, 0.016178736517719568, 0.016178736517719568, 0.016178736517719568, 0.016178736517719568, 0.016178736517719568, 0.016178736517719568, 0.01694915254237288, 0.016178736517719568, 0.01694915254237288, 0.01694915254237288, 0.01926040061633282, 0.020030816640986132, 0.020030816640986132, 0.020030816640986132, 0.020030816640986132, 0.020030816640986132, 0.020801232665639446, 0.023112480739599383, 0.02465331278890601, 0.026964560862865947, 0.028505392912172575, 0.029275808936825885, 0.030046224961479198, 0.03389830508474576, 0.0423728813559322, 0.05624036979969183, 0.13020030816640987, 0.337442218798151], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BAR_2.gap.json b/pfam_gap_rates/BAR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da043bd9119acb59c9d474902eb2876016b60222
--- /dev/null
+++ b/pfam_gap_rates/BAR_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BCAS2.gap.json b/pfam_gap_rates/BCAS2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed3e80c19ced99eccfddccfefa393c10bd26449d
--- /dev/null
+++ b/pfam_gap_rates/BCAS2.gap.json
@@ -0,0 +1 @@
+{"family": "BCAS2", "n_seqs": 316, "length": 218, "gap_rates": [0.3322784810126582, 0.25316455696202533, 0.22468354430379747, 0.2088607594936709, 0.20569620253164558, 0.20569620253164558, 0.20569620253164558, 0.19936708860759494, 0.1962025316455696, 0.1962025316455696, 0.1962025316455696, 0.2088607594936709, 0.6012658227848101, 0.8955696202531646, 0.27848101265822783, 0.20253164556962025, 0.19936708860759494, 0.1930379746835443, 0.1930379746835443, 0.18354430379746836, 0.18037974683544303, 0.18037974683544303, 0.18037974683544303, 0.18037974683544303, 0.17721518987341772, 0.17405063291139242, 0.17405063291139242, 0.17721518987341772, 0.17721518987341772, 0.17405063291139242, 0.17721518987341772, 0.18354430379746836, 0.17721518987341772, 0.18354430379746836, 0.18037974683544303, 0.189873417721519, 0.1930379746835443, 0.25, 0.4430379746835443, 0.9113924050632911, 0.9430379746835443, 0.759493670886076, 0.2120253164556962, 0.19936708860759494, 0.18670886075949367, 0.18670886075949367, 0.17405063291139242, 0.17405063291139242, 0.17405063291139242, 0.17405063291139242, 0.26582278481012656, 0.2310126582278481, 0.18670886075949367, 0.1550632911392405, 0.8639240506329114, 0.9462025316455697, 0.7056962025316456, 0.34177215189873417, 0.15822784810126583, 0.14873417721518986, 0.13924050632911392, 0.12974683544303797, 0.13291139240506328, 0.12974683544303797, 0.12974683544303797, 0.12974683544303797, 0.12974683544303797, 0.12974683544303797, 0.13291139240506328, 0.12658227848101267, 0.12025316455696203, 0.11708860759493671, 0.11392405063291139, 0.11392405063291139, 0.11392405063291139, 0.11075949367088607, 0.11075949367088607, 0.870253164556962, 0.11075949367088607, 0.11392405063291139, 0.10759493670886076, 0.10759493670886076, 0.11075949367088607, 0.11708860759493671, 0.12341772151898735, 0.8259493670886076, 0.11392405063291139, 0.11392405063291139, 0.11392405063291139, 0.11075949367088607, 0.11708860759493671, 0.2088607594936709, 0.26582278481012656, 0.2974683544303797, 0.9082278481012658, 0.9335443037974683, 0.9430379746835443, 0.9177215189873418, 0.8607594936708861, 0.17088607594936708, 0.1550632911392405, 0.1518987341772152, 0.1518987341772152, 0.13924050632911392, 0.13291139240506328, 0.12658227848101267, 0.11075949367088607, 0.10759493670886076, 0.10443037974683544, 0.10443037974683544, 0.10443037974683544, 0.10443037974683544, 0.10126582278481013, 0.09177215189873418, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.07911392405063292, 0.08227848101265822, 0.08544303797468354, 0.08544303797468354, 0.07911392405063292, 0.07911392405063292, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.07911392405063292, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.07911392405063292, 0.07911392405063292, 0.07911392405063292, 0.07911392405063292, 0.0759493670886076, 0.07911392405063292, 0.07911392405063292, 0.07278481012658228, 0.07278481012658228, 0.07278481012658228, 0.07278481012658228, 0.07278481012658228, 0.07278481012658228, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06645569620253164, 0.06329113924050633, 0.06645569620253164, 0.06645569620253164, 0.06645569620253164, 0.06645569620253164, 0.06645569620253164, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.07278481012658228, 0.07278481012658228, 0.07278481012658228, 0.07278481012658228, 0.07278481012658228, 0.07278481012658228, 0.07278481012658228, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.07911392405063292, 0.07911392405063292, 0.07911392405063292, 0.08544303797468354, 0.08544303797468354, 0.08227848101265822, 0.07911392405063292, 0.07911392405063292, 0.08227848101265822, 0.08544303797468354, 0.09177215189873418, 0.09177215189873418, 0.09177215189873418, 0.09177215189873418, 0.0949367088607595, 0.0949367088607595, 0.10126582278481013, 0.11075949367088607, 0.11075949367088607, 0.11392405063291139, 0.12025316455696203, 0.12341772151898735, 0.13291139240506328, 0.13291139240506328, 0.1360759493670886, 0.13924050632911392, 0.1518987341772152, 0.18354430379746836, 0.189873417721519, 0.21835443037974683, 0.2468354430379747, 0.2626582278481013, 0.2974683544303797, 0.33860759493670883, 0.4462025316455696, 0.5886075949367089, 0.7310126582278481], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BCA_ABC_TP_C.gap.json b/pfam_gap_rates/BCA_ABC_TP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74a0f759a5c19c6fbf971e02e9b6a2b32b1cb1de
--- /dev/null
+++ b/pfam_gap_rates/BCA_ABC_TP_C.gap.json
@@ -0,0 +1 @@
+{"family": "BCA_ABC_TP_C", "n_seqs": 3989, "length": 23, "gap_rates": [0.4264226623213838, 0.1203309100025069, 0.055151667084482325, 0.04913512158435698, 0.009776886437703684, 0.0027575833542241163, 0.002005515166708448, 0.0015041363750313362, 0.0007520681875156681, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.000501378791677112, 0.0032589621459012284, 0.0032589621459012284, 0.004011030333416896, 0.004512409125094008, 0.004512409125094008, 0.005264477312609677, 0.011782401604412133], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BCS1_N.gap.json b/pfam_gap_rates/BCS1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1ee145977fc4498a8af8b05174a04efdf608504
--- /dev/null
+++ b/pfam_gap_rates/BCS1_N.gap.json
@@ -0,0 +1 @@
+{"family": "BCS1_N", "n_seqs": 593, "length": 247, "gap_rates": [0.48903878583473864, 0.3608768971332209, 0.26138279932546377, 0.21247892074198987, 0.19392917369308602, 0.178752107925801, 0.17200674536256325, 0.15851602023608768, 0.1467116357504216, 0.1433389544688027, 0.1399662731871838, 0.13322091062394603, 0.1315345699831366, 0.12984822934232715, 0.12478920741989882, 0.11973018549747048, 0.11467116357504216, 0.11298482293423272, 0.11298482293423272, 0.10961214165261383, 0.10961214165261383, 0.10792580101180438, 0.10118043844856661, 0.09612141652613827, 0.09612141652613827, 0.09612141652613827, 0.0893760539629005, 0.0893760539629005, 0.0893760539629005, 0.0893760539629005, 0.09106239460370995, 0.08768971332209106, 0.08768971332209106, 0.08768971332209106, 0.09106239460370995, 0.0893760539629005, 0.08600337268128162, 0.07925801011804384, 0.07925801011804384, 0.0775716694772344, 0.0775716694772344, 0.07588532883642496, 0.07588532883642496, 0.08263069139966273, 0.09106239460370995, 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\ No newline at end of file
diff --git a/pfam_gap_rates/BHD_1.gap.json b/pfam_gap_rates/BHD_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea77c09823b762b208ec142cb8073c02f8bb2dc9
--- /dev/null
+++ b/pfam_gap_rates/BHD_1.gap.json
@@ -0,0 +1 @@
+{"family": "BHD_1", "n_seqs": 393, "length": 62, "gap_rates": [0.6513994910941476, 0.20610687022900764, 0.10432569974554708, 0.06361323155216285, 0.1450381679389313, 0.015267175572519083, 0.01272264631043257, 0.01272264631043257, 0.01272264631043257, 0.01272264631043257, 0.01272264631043257, 0.01272264631043257, 0.010178117048346057, 0.010178117048346057, 0.010178117048346057, 0.005089058524173028, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002544529262086514, 0.0, 0.0, 0.0, 0.002544529262086514, 0.002544529262086514, 0.005089058524173028, 0.7811704834605598, 0.005089058524173028, 0.22391857506361323, 0.9083969465648855, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.007633587786259542, 0.04071246819338423, 0.5190839694656488, 0.6055979643765903, 0.6208651399491094, 0.7099236641221374, 0.8600508905852418, 0.9389312977099237, 0.732824427480916, 0.6310432569974554, 0.6055979643765903, 0.6055979643765903, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.017811704834605598, 0.017811704834605598, 0.04580152671755725, 0.10687022900763359], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BNIP2.gap.json b/pfam_gap_rates/BNIP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e3c4dde75ccc1fa467cb813abaf1c8fcfdf6740
--- /dev/null
+++ b/pfam_gap_rates/BNIP2.gap.json
@@ -0,0 +1 @@
+{"family": "BNIP2", "n_seqs": 108, "length": 191, "gap_rates": [0.7314814814814815, 0.3425925925925926, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.32407407407407407, 0.32407407407407407, 0.3148148148148148, 0.3148148148148148, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.2962962962962963, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.8611111111111112, 0.3333333333333333, 0.3333333333333333, 0.3425925925925926, 0.32407407407407407, 0.3055555555555556, 0.8240740740740741, 0.8240740740740741, 0.8148148148148148, 0.8148148148148148, 0.8148148148148148, 0.8425925925925926, 0.8055555555555556, 0.7685185185185185, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9444444444444444, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9074074074074074, 0.25, 0.2222222222222222, 0.2222222222222222, 0.23148148148148148, 0.23148148148148148, 0.3333333333333333, 0.4074074074074074, 0.4722222222222222, 0.4444444444444444, 0.4351851851851852, 0.8888888888888888, 0.2037037037037037, 0.2037037037037037, 0.19444444444444445, 0.18518518518518517, 0.18518518518518517, 0.17592592592592593, 0.1574074074074074, 0.8888888888888888, 0.8888888888888888, 0.9074074074074074, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9074074074074074, 0.9074074074074074, 0.8888888888888888, 0.8888888888888888, 0.1574074074074074, 0.16666666666666666, 0.1574074074074074, 0.14814814814814814, 0.14814814814814814, 0.3425925925925926, 0.3333333333333333, 0.32407407407407407, 0.3148148148148148, 0.3148148148148148, 0.39814814814814814, 0.3888888888888889, 0.37962962962962965, 0.16666666666666666, 0.2037037037037037, 0.19444444444444445, 0.32407407407407407, 0.3148148148148148, 0.3055555555555556, 0.3055555555555556, 0.2962962962962963, 0.26851851851851855, 0.23148148148148148, 0.3148148148148148, 0.3333333333333333, 0.3425925925925926, 0.3055555555555556, 0.23148148148148148, 0.25925925925925924, 0.9259259259259259, 0.9444444444444444, 0.9351851851851852, 0.9074074074074074, 0.18518518518518517, 0.2037037037037037, 0.19444444444444445, 0.1574074074074074, 0.14814814814814814, 0.12962962962962962, 0.12037037037037036, 0.2777777777777778, 0.25925925925925924, 0.09259259259259259, 0.08333333333333333, 0.07407407407407407, 0.08333333333333333, 0.08333333333333333, 0.07407407407407407, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.037037037037037035, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.6944444444444444, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.8888888888888888, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.037037037037037035, 0.037037037037037035, 0.046296296296296294, 0.08333333333333333, 0.14814814814814814], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BON.gap.json b/pfam_gap_rates/BON.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15312b9da1622cfc059be8da7b7166b2bcc957bc
--- /dev/null
+++ b/pfam_gap_rates/BON.gap.json
@@ -0,0 +1 @@
+{"family": "BON", "n_seqs": 2517, "length": 70, "gap_rates": [0.566150178784267, 0.3182359952324195, 0.2578466428287644, 0.20699245133094954, 0.16209773539928488, 0.13825983313468415, 0.11640842272546682, 0.09932459276916965, 0.08740564163686929, 0.08144616607071911, 0.07787048073102901, 0.07151370679380215, 0.06714342471195868, 0.06158124751688518, 0.05919745729042511, 0.0631704410011919, 0.9348430671434247, 0.22963845848232023, 0.1410409217322209, 0.11720301946762018, 0.11680572109654351, 0.09852999602701629, 0.05045689312673818, 0.01748112832737386, 0.015494636471990465, 0.014700039729837107, 0.012713547874453715, 0.011521652761223678, 0.011521652761223678, 0.009535160905840286, 0.007548669050456893, 0.009137862534763607, 0.004370282081843465, 0.001986491855383393, 0.0011918951132300357, 0.0011918951132300357, 0.0007945967421533572, 0.0003972983710766786, 0.0003972983710766786, 0.0007945967421533572, 0.11124354390147001, 0.0015891934843067143, 0.0011918951132300357, 0.0015891934843067143, 0.001986491855383393, 0.0023837902264600714, 0.0031783869686134287, 0.003575685339690107, 0.003575685339690107, 0.003575685339690107, 0.003972983710766786, 0.004370282081843465, 0.0059594755661501785, 0.007151370679380214, 0.009932459276916964, 0.015494636471990465, 0.012713547874453715, 0.02185141040921732, 0.024235200635677395, 0.019467620182757252, 0.023440603893524037, 0.030194676201827572, 0.03694874851013111, 0.05919745729042511, 0.08224076281287247, 0.09137862534763608, 0.1374652363925308, 0.21414382201032975, 0.42550655542312277, 0.8974970202622169], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BRO1.gap.json b/pfam_gap_rates/BRO1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87d5af8c1a1e786df107f932691c905f1c8cd5aa
--- /dev/null
+++ b/pfam_gap_rates/BRO1.gap.json
@@ -0,0 +1 @@
+{"family": "BRO1", "n_seqs": 1036, "length": 533, "gap_rates": [0.6167953667953668, 0.527027027027027, 0.5144787644787645, 0.5048262548262549, 0.5038610038610039, 0.500965250965251, 0.49903474903474904, 0.4971042471042471, 0.4951737451737452, 0.5472972972972973, 0.4942084942084942, 0.8754826254826255, 0.47393822393822393, 0.472007722007722, 0.47104247104247104, 0.47297297297297297, 0.47876447876447875, 0.46621621621621623, 0.4623552123552124, 0.4575289575289575, 0.45656370656370654, 0.44884169884169883, 0.4469111969111969, 0.4469111969111969, 0.444980694980695, 0.4411196911196911, 0.43822393822393824, 0.943050193050193, 0.5588803088803089, 0.6988416988416989, 0.4517374517374517, 0.43532818532818535, 0.4305019305019305, 0.41505791505791506, 0.41023166023166024, 0.39864864864864863, 0.38996138996138996, 0.38803088803088803, 0.3841698841698842, 0.3687258687258687, 0.3581081081081081, 0.35231660231660233, 0.3474903474903475, 0.34266409266409265, 0.3407335907335907, 0.3388030888030888, 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\ No newline at end of file
diff --git a/pfam_gap_rates/BRX.gap.json b/pfam_gap_rates/BRX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f15ac0b1a88ff3528532213ef1b1122931a5e69
--- /dev/null
+++ b/pfam_gap_rates/BRX.gap.json
@@ -0,0 +1 @@
+{"family": "BRX", "n_seqs": 469, "length": 57, "gap_rates": [0.6652452025586354, 0.16631130063965885, 0.09594882729211088, 0.053304904051172705, 0.053304904051172705, 0.05543710021321962, 0.029850746268656716, 0.029850746268656716, 0.02771855010660981, 0.0255863539445629, 0.0255863539445629, 0.0255863539445629, 0.023454157782515993, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.021321961620469083, 0.019189765458422176, 0.017057569296375266, 0.017057569296375266, 0.9445628997867804, 0.017057569296375266, 0.017057569296375266, 0.017057569296375266, 0.017057569296375266, 0.017057569296375266, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.0255863539445629, 0.042643923240938165, 0.046908315565031986, 0.03837953091684435, 0.042643923240938165, 0.04477611940298507, 0.04051172707889126, 0.04051172707889126, 0.04051172707889126, 0.04051172707889126, 0.04051172707889126, 0.042643923240938165, 0.042643923240938165, 0.042643923240938165, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.046908315565031986, 0.04904051172707889, 0.04904051172707889, 0.05543710021321962, 0.06396588486140725, 0.06609808102345416], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BT1.gap.json b/pfam_gap_rates/BT1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b50b9fdf1c5099a37d7a822f865e54c11f5a1baa
--- /dev/null
+++ b/pfam_gap_rates/BT1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BTB.gap.json b/pfam_gap_rates/BTB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1222f63baaf05523d5efd55366522e5145897da9
--- /dev/null
+++ b/pfam_gap_rates/BTB.gap.json
@@ -0,0 +1 @@
+{"family": "BTB", "n_seqs": 5000, "length": 135, "gap_rates": [0.8224, 0.7028, 0.5958, 0.5062, 0.4484, 0.4058, 0.38, 0.3464, 0.3066, 0.269, 0.2284, 0.1916, 0.1496, 0.1372, 0.1286, 0.125, 0.1212, 0.1192, 0.6742, 0.8682, 0.8834, 0.8106, 0.1118, 0.0826, 0.0692, 0.06, 0.0576, 0.0544, 0.0536, 0.0534, 0.0524, 0.048, 0.0472, 0.055, 0.0614, 0.0474, 0.0446, 0.041, 0.041, 0.0404, 0.0394, 0.039, 0.033, 0.0314, 0.0314, 0.0322, 0.0332, 0.7994, 0.865, 0.9052, 0.9354, 0.9218, 0.8836, 0.8396, 0.7192, 0.5748, 0.2788, 0.1606, 0.1256, 0.1108, 0.1192, 0.2384, 0.1612, 0.877, 0.9248, 0.941, 0.9078, 0.8472, 0.0826, 0.0372, 0.0564, 0.0822, 0.0386, 0.0358, 0.044, 0.0308, 0.0336, 0.0324, 0.0326, 0.0312, 0.0314, 0.0314, 0.0312, 0.0318, 0.0322, 0.0368, 0.0364, 0.0374, 0.039, 0.0404, 0.048, 0.0528, 0.0558, 0.062, 0.0858, 0.7136, 0.853, 0.9114, 0.9384, 0.9446, 0.9254, 0.8888, 0.819, 0.6528, 0.577, 0.1068, 0.1038, 0.1052, 0.1068, 0.1084, 0.1104, 0.1138, 0.1152, 0.1186, 0.1212, 0.1226, 0.125, 0.1264, 0.1272, 0.1296, 0.1322, 0.1392, 0.1538, 0.1762, 0.188, 0.205, 0.2308, 0.2582, 0.2768, 0.2964, 0.328, 0.36, 0.4466, 0.5642, 0.736], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BTB_2.gap.json b/pfam_gap_rates/BTB_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7275e72750f6b24c1f2d9787ca1a9a9e60af206
--- /dev/null
+++ b/pfam_gap_rates/BTB_2.gap.json
@@ -0,0 +1 @@
+{"family": "BTB_2", "n_seqs": 2640, "length": 104, "gap_rates": [0.22272727272727272, 0.13106060606060607, 0.10265151515151515, 0.10113636363636364, 0.09924242424242424, 0.09848484848484848, 0.09696969696969697, 0.09393939393939393, 0.09053030303030303, 0.08409090909090909, 0.0821969696969697, 0.0803030303030303, 0.07803030303030303, 0.07727272727272727, 0.07462121212121212, 0.07234848484848484, 0.07121212121212121, 0.06893939393939394, 0.15795454545454546, 0.07689393939393939, 0.9151515151515152, 0.06325757575757576, 0.06515151515151515, 0.06401515151515151, 0.05909090909090909, 0.0571969696969697, 0.05568181818181818, 0.055303030303030305, 0.055303030303030305, 0.054924242424242424, 0.054924242424242424, 0.29583333333333334, 0.3242424242424242, 0.7837121212121212, 0.8151515151515152, 0.8481060606060606, 0.943939393939394, 0.8231060606060606, 0.8037878787878788, 0.7613636363636364, 0.43825757575757573, 0.7515151515151515, 0.12992424242424241, 0.0875, 0.0715909090909091, 0.058712121212121215, 0.03939393939393939, 0.029924242424242423, 0.026893939393939394, 0.026136363636363635, 0.01893939393939394, 0.014393939393939395, 0.012878787878787878, 0.0125, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011742424242424242, 0.0125, 0.011363636363636364, 0.010984848484848484, 0.010984848484848484, 0.010984848484848484, 0.011742424242424242, 0.012878787878787878, 0.013636363636363636, 0.014393939393939395, 0.014772727272727272, 0.01628787878787879, 0.017045454545454544, 0.6090909090909091, 0.7897727272727273, 0.041666666666666664, 0.03977272727272727, 0.04318181818181818, 0.04772727272727273, 0.056818181818181816, 0.0659090909090909, 0.2606060606060606, 0.08409090909090909, 0.07007575757575757, 0.06515151515151515, 0.0659090909090909, 0.06818181818181818, 0.06818181818181818, 0.06893939393939394, 0.07045454545454545, 0.07272727272727272, 0.07348484848484849, 0.07537878787878788, 0.07840909090909091, 0.08106060606060606, 0.08106060606060606, 0.08295454545454546, 0.08484848484848485, 0.09128787878787879, 0.14053030303030303, 0.18977272727272726, 0.5920454545454545, 0.5242424242424243, 0.5878787878787879, 0.628030303030303, 0.675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BTK.gap.json b/pfam_gap_rates/BTK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9d656e811314abc059d41493a045589c9a4e8fb
--- /dev/null
+++ b/pfam_gap_rates/BTK.gap.json
@@ -0,0 +1 @@
+{"family": "BTK", "n_seqs": 192, "length": 30, "gap_rates": [0.24479166666666666, 0.06770833333333333, 0.057291666666666664, 0.057291666666666664, 0.057291666666666664, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.03125, 0.03125, 0.020833333333333332, 0.0, 0.0, 0.0, 0.005208333333333333, 0.0, 0.0, 0.0, 0.0, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.0625, 0.16666666666666666, 0.24479166666666666, 0.8072916666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_DNA_binding.gap.json b/pfam_gap_rates/Bac_DNA_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bdc684225b4415f134ca2d1ccadce2d54db32a5
--- /dev/null
+++ b/pfam_gap_rates/Bac_DNA_binding.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_DNA_binding", "n_seqs": 4858, "length": 91, "gap_rates": [0.1805269658295595, 0.08048579662412515, 0.06545903664059284, 0.04569781803211198, 0.03355290242898312, 0.02202552490736929, 0.020790448744339236, 0.018937834499794155, 0.018114450391107453, 0.016467682173734045, 0.018526142445450804, 0.014820913956360642, 0.01399752984767394, 0.013791683820502264, 0.015644298065047343, 0.877521613832853, 0.020378756689995885, 0.0084396871140387, 0.007822149032523672, 0.007410456978180321, 0.00699876492383697, 0.006587072869493619, 0.006175380815150268, 0.006175380815150268, 0.005763688760806916, 0.005557842733635241, 0.004116920543433511, 0.0037052284890901604, 0.0037052284890901604, 0.0037052284890901604, 0.0037052284890901604, 0.003499382461918485, 0.0032935364347468094, 0.0032935364347468094, 0.003087690407575134, 0.0032935364347468094, 0.005969534787978592, 0.005351996706463565, 0.003499382461918485, 0.0032935364347468094, 0.004116920543433511, 0.003499382461918485, 0.003499382461918485, 0.0037052284890901604, 0.0037052284890901604, 0.004322766570605188, 0.004116920543433511, 0.004322766570605188, 0.004322766570605188, 0.004528612597776863, 0.004734458624948539, 0.00514615067929189, 0.005969534787978592, 0.007616303005351997, 0.012762453684643887, 0.017908604363935775, 0.01914368052696583, 0.023672293124742692, 0.028200905722519556, 0.02902428983120626, 0.028612597776862907, 0.0337587484561548, 0.03499382461918485, 0.03355290242898312, 0.033347056401811445, 0.033347056401811445, 0.03293536434746809, 0.03272951832029642, 0.03417044051049815, 0.0345821325648415, 0.035611362700699874, 0.036228900782214905, 0.040345821325648415, 0.03705228489090161, 0.036228900782214905, 0.0354055166735282, 0.0354055166735282, 0.035611362700699874, 0.03581720872787155, 0.036228900782214905, 0.03664059283655825, 0.03705228489090161, 0.03787566899958831, 0.03972828324413339, 0.04116920543433512, 0.042610127624536843, 0.04899135446685879, 0.059283655825442566, 0.07883902840675175, 0.11650885137916839, 0.4960889254837382], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_rhodopsin.gap.json b/pfam_gap_rates/Bac_rhodopsin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e7cc024bd849f0a810d05589f40ce7a8e61d7ba
--- /dev/null
+++ b/pfam_gap_rates/Bac_rhodopsin.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_rhodopsin", "n_seqs": 412, "length": 260, "gap_rates": [0.8592233009708737, 0.7281553398058253, 0.5194174757281553, 0.28640776699029125, 0.24514563106796117, 0.220873786407767, 0.1966019417475728, 0.18689320388349515, 0.1820388349514563, 0.17233009708737865, 0.1553398058252427, 0.14320388349514562, 0.14320388349514562, 0.1383495145631068, 0.1383495145631068, 0.13349514563106796, 0.1383495145631068, 0.13349514563106796, 0.13592233009708737, 0.16019417475728157, 0.17475728155339806, 0.14563106796116504, 0.1407766990291262, 0.1407766990291262, 0.46116504854368934, 0.4029126213592233, 0.1553398058252427, 0.14805825242718446, 0.14805825242718446, 0.2645631067961165, 0.11165048543689321, 0.10436893203883495, 0.10436893203883495, 0.09951456310679611, 0.09223300970873786, 0.08495145631067962, 0.07766990291262135, 0.07766990291262135, 0.07281553398058252, 0.10922330097087378, 0.08737864077669903, 0.08495145631067962, 0.06796116504854369, 0.06796116504854369, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_surface_Ag.gap.json b/pfam_gap_rates/Bac_surface_Ag.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b0fc37fe4d2c8aa0edf64a966c529b7f090039a3
--- /dev/null
+++ b/pfam_gap_rates/Bac_surface_Ag.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Bactofilin.gap.json b/pfam_gap_rates/Bactofilin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c0115cdffb925473486be1c0885daf78e9976a0
--- /dev/null
+++ b/pfam_gap_rates/Bactofilin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BenE.gap.json b/pfam_gap_rates/BenE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6577f3229e165047ce9f33f8fd0518d1756780e1
--- /dev/null
+++ b/pfam_gap_rates/BenE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Beta-lactamase2.gap.json b/pfam_gap_rates/Beta-lactamase2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4058b76406b151a841624eb807627e2c10fbbbeb
--- /dev/null
+++ b/pfam_gap_rates/Beta-lactamase2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BiPBP_C.gap.json b/pfam_gap_rates/BiPBP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72ec1cdb2dcb23cadd2360eba58693493550a626
--- /dev/null
+++ b/pfam_gap_rates/BiPBP_C.gap.json
@@ -0,0 +1 @@
+{"family": "BiPBP_C", "n_seqs": 380, "length": 94, "gap_rates": [0.9026315789473685, 0.8105263157894737, 0.6789473684210526, 0.5421052631578948, 0.39210526315789473, 0.23684210526315788, 0.15, 0.08421052631578947, 0.042105263157894736, 0.034210526315789476, 0.02368421052631579, 0.018421052631578946, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.021052631578947368, 0.04736842105263158, 0.1368421052631579, 0.16578947368421051, 0.32105263157894737, 0.5210526315789473, 0.22105263157894736, 0.09473684210526316, 0.039473684210526314, 0.002631578947368421, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7052631578947368, 0.05526315789473684, 0.02368421052631579, 0.7394736842105263, 0.5789473684210527, 0.015789473684210527, 0.013157894736842105, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2631578947368421, 0.1868421052631579, 0.12105263157894737, 0.02368421052631579, 0.007894736842105263, 0.007894736842105263, 0.002631578947368421, 0.002631578947368421, 0.005263157894736842, 0.005263157894736842, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.5657894736842105, 0.005263157894736842, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.013157894736842105, 0.018421052631578946, 0.02631578947368421, 0.039473684210526314, 0.09736842105263158, 0.11052631578947368, 0.0868421052631579, 0.09473684210526316, 0.11052631578947368, 0.12105263157894737, 0.12631578947368421, 0.15, 0.17105263157894737, 0.9236842105263158, 0.8131578947368421, 0.3157894736842105, 0.46842105263157896, 0.6394736842105263], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Big_1.gap.json b/pfam_gap_rates/Big_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21a57c20fb09f1550a9ecc145034590fd44ae913
--- /dev/null
+++ b/pfam_gap_rates/Big_1.gap.json
@@ -0,0 +1 @@
+{"family": "Big_1", "n_seqs": 244, "length": 109, "gap_rates": [0.9344262295081968, 0.8647540983606558, 0.7663934426229508, 0.7090163934426229, 0.6598360655737705, 0.6311475409836066, 0.6024590163934426, 0.569672131147541, 0.5286885245901639, 0.5204918032786885, 0.48770491803278687, 0.7049180327868853, 0.6680327868852459, 0.5327868852459017, 0.7704918032786885, 0.9467213114754098, 0.860655737704918, 0.6762295081967213, 0.18442622950819673, 0.1557377049180328, 0.12295081967213115, 0.08196721311475409, 0.0778688524590164, 0.06557377049180328, 0.05327868852459016, 0.036885245901639344, 0.01639344262295082, 0.012295081967213115, 0.012295081967213115, 0.004098360655737705, 0.004098360655737705, 0.00819672131147541, 0.00819672131147541, 0.0, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.45901639344262296, 0.8934426229508197, 0.9467213114754098, 0.7540983606557377, 0.3360655737704918, 0.21311475409836064, 0.012295081967213115, 0.004098360655737705, 0.0, 0.00819672131147541, 0.01639344262295082, 0.004098360655737705, 0.0, 0.0, 0.0, 0.0, 0.6721311475409836, 0.7336065573770492, 0.9098360655737705, 0.2581967213114754, 0.040983606557377046, 0.01639344262295082, 0.0, 0.004098360655737705, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01639344262295082, 0.9262295081967213, 0.01639344262295082, 0.020491803278688523, 0.9016393442622951, 0.9180327868852459, 0.7540983606557377, 0.040983606557377046, 0.04918032786885246, 0.05737704918032787, 0.06147540983606557, 0.06557377049180328, 0.06557377049180328, 0.07377049180327869, 0.0778688524590164, 0.08196721311475409, 0.0860655737704918, 0.12704918032786885, 0.14344262295081966, 0.8811475409836066, 0.20901639344262296, 0.27049180327868855, 0.3319672131147541, 0.45491803278688525, 0.5245901639344263, 0.7459016393442623, 0.7459016393442623, 0.8278688524590164, 0.8729508196721312, 0.9262295081967213], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Biopterin_H.gap.json b/pfam_gap_rates/Biopterin_H.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c92f51767f6ae7e4e8bab9c005a0d871ba6c834
--- /dev/null
+++ b/pfam_gap_rates/Biopterin_H.gap.json
@@ -0,0 +1 @@
+{"family": "Biopterin_H", "n_seqs": 718, "length": 333, "gap_rates": [0.649025069637883, 0.6044568245125348, 0.5919220055710307, 0.5891364902506964, 0.5891364902506964, 0.5891364902506964, 0.5877437325905293, 0.5863509749303621, 0.5863509749303621, 0.5863509749303621, 0.5863509749303621, 0.5891364902506964, 0.5988857938718662, 0.6072423398328691, 0.5877437325905293, 0.584958217270195, 0.5835654596100278, 0.584958217270195, 0.5835654596100278, 0.575208913649025, 0.5682451253481894, 0.5626740947075209, 0.5487465181058496, 0.5487465181058496, 0.5473537604456824, 0.5459610027855153, 0.5445682451253482, 0.5445682451253482, 0.5403899721448467, 0.5403899721448467, 0.541782729805014, 0.5389972144846796, 0.541782729805014, 0.5431754874651811, 0.5431754874651811, 0.541782729805014, 0.541782729805014, 0.541782729805014, 0.541782729805014, 0.5459610027855153, 0.5445682451253482, 0.5431754874651811, 0.5431754874651811, 0.5431754874651811, 0.541782729805014, 0.5431754874651811, 0.5334261838440112, 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\ No newline at end of file
diff --git a/pfam_gap_rates/BofA.gap.json b/pfam_gap_rates/BofA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24d7312fa3260b83ab001a1887cde40f2782af5d
--- /dev/null
+++ b/pfam_gap_rates/BofA.gap.json
@@ -0,0 +1 @@
+{"family": "BofA", "n_seqs": 330, "length": 79, "gap_rates": [0.7272727272727273, 0.3787878787878788, 0.2636363636363636, 0.19393939393939394, 0.16666666666666666, 0.15151515151515152, 0.14545454545454545, 0.14545454545454545, 0.14242424242424243, 0.14242424242424243, 0.14545454545454545, 0.1393939393939394, 0.15151515151515152, 0.1393939393939394, 0.12121212121212122, 0.11515151515151516, 0.07575757575757576, 0.024242424242424242, 0.024242424242424242, 0.01818181818181818, 0.051515151515151514, 0.04242424242424243, 0.03939393939393939, 0.03333333333333333, 0.0030303030303030303, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9121212121212121, 0.0696969696969697, 0.07272727272727272, 0.9363636363636364, 0.0696969696969697, 0.030303030303030304, 0.0030303030303030303, 0.006060606060606061, 0.0030303030303030303, 0.006060606060606061, 0.0030303030303030303, 0.9484848484848485, 0.9363636363636364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.024242424242424242, 0.08787878787878788, 0.17272727272727273, 0.7212121212121212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BrnA_antitoxin.gap.json b/pfam_gap_rates/BrnA_antitoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c12c4011aff0cdd10cb8034f8d3f34fb7ea0c88c
--- /dev/null
+++ b/pfam_gap_rates/BrnA_antitoxin.gap.json
@@ -0,0 +1 @@
+{"family": "BrnA_antitoxin", "n_seqs": 405, "length": 93, "gap_rates": [0.6024691358024692, 0.5580246913580247, 0.5259259259259259, 0.5111111111111111, 0.5111111111111111, 0.5061728395061729, 0.48148148148148145, 0.4765432098765432, 0.8296296296296296, 0.4567901234567901, 0.49382716049382713, 0.39753086419753086, 0.3851851851851852, 0.37037037037037035, 0.3728395061728395, 0.3654320987654321, 0.39753086419753086, 0.4049382716049383, 0.5728395061728395, 0.6592592592592592, 0.6370370370370371, 0.5358024691358024, 0.6641975308641975, 0.6938271604938272, 0.7185185185185186, 0.7851851851851852, 0.8296296296296296, 0.8962962962962963, 0.9209876543209876, 0.9308641975308642, 0.9160493827160494, 0.8617283950617284, 0.8148148148148148, 0.7555555555555555, 0.6987654320987654, 0.6765432098765433, 0.654320987654321, 0.4839506172839506, 0.41975308641975306, 0.34074074074074073, 0.2345679012345679, 0.16790123456790124, 0.11851851851851852, 0.11358024691358025, 0.4222222222222222, 0.7703703703703704, 0.38271604938271603, 0.09876543209876543, 0.0691358024691358, 0.009876543209876543, 0.009876543209876543, 0.908641975308642, 0.009876543209876543, 0.009876543209876543, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0024691358024691358, 0.0024691358024691358, 0.0024691358024691358, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8518518518518519, 0.8864197530864197, 0.8691358024691358, 0.8469135802469135, 0.0024691358024691358, 0.0049382716049382715, 0.0049382716049382715, 0.0, 0.8592592592592593, 0.8740740740740741, 0.8617283950617284, 0.8493827160493828, 0.0024691358024691358, 0.0, 0.0, 0.0, 0.0, 0.0024691358024691358, 0.0024691358024691358, 0.0024691358024691358, 0.007407407407407408, 0.014814814814814815, 0.04691358024691358, 0.13580246913580246, 0.3333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Brr6_like_C_C.gap.json b/pfam_gap_rates/Brr6_like_C_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bdad90988e60dca4a2941aaf0ada281cd0c163a1
--- /dev/null
+++ b/pfam_gap_rates/Brr6_like_C_C.gap.json
@@ -0,0 +1 @@
+{"family": "Brr6_like_C_C", "n_seqs": 205, "length": 135, "gap_rates": [0.9024390243902439, 0.23414634146341465, 0.13170731707317074, 0.11219512195121951, 0.0975609756097561, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.06829268292682927, 0.05365853658536585, 0.04878048780487805, 0.04878048780487805, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.04390243902439024, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.04390243902439024, 0.03902439024390244, 0.07804878048780488, 0.24390243902439024, 0.04390243902439024, 0.04390243902439024, 0.03414634146341464, 0.8780487804878049, 0.08780487804878048, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.03414634146341464, 0.014634146341463415, 0.00975609756097561, 0.014634146341463415, 0.01951219512195122, 0.02926829268292683, 0.03414634146341464, 0.9414634146341463, 0.03902439024390244, 0.01951219512195122, 0.7268292682926829, 0.04390243902439024, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.06829268292682927, 0.04878048780487805, 0.05365853658536585, 0.05853658536585366, 0.05365853658536585, 0.05853658536585366, 0.06341463414634146, 0.05853658536585366, 0.05853658536585366, 0.06341463414634146, 0.06829268292682927, 0.08292682926829269, 0.08780487804878048, 0.14634146341463414, 0.1902439024390244, 0.22439024390243903, 0.2634146341463415, 0.2780487804878049, 0.33170731707317075, 0.47317073170731705, 0.7560975609756098], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bud13.gap.json b/pfam_gap_rates/Bud13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8084d7582c6d3fb2f5e173d4d2bc3d8daae973da
--- /dev/null
+++ b/pfam_gap_rates/Bud13.gap.json
@@ -0,0 +1 @@
+{"family": "Bud13", "n_seqs": 323, "length": 175, "gap_rates": [0.43962848297213625, 0.23839009287925697, 0.20743034055727555, 0.19814241486068113, 0.19195046439628483, 0.19504643962848298, 0.19195046439628483, 0.913312693498452, 0.17956656346749225, 0.17337461300309598, 0.15479876160990713, 0.15170278637770898, 0.15170278637770898, 0.15170278637770898, 0.1393188854489164, 0.13622291021671826, 0.1393188854489164, 0.9164086687306502, 0.14241486068111456, 0.1393188854489164, 0.7863777089783281, 0.21052631578947367, 0.22910216718266255, 0.21362229102167182, 0.21981424148606812, 0.19504643962848298, 0.1609907120743034, 0.13312693498452013, 0.13312693498452013, 0.13312693498452013, 0.13003095975232198, 0.1238390092879257, 0.12074303405572756, 0.11145510835913312, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10835913312693499, 0.10835913312693499, 0.10526315789473684, 0.1021671826625387, 0.1021671826625387, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.1021671826625387, 0.1021671826625387, 0.09907120743034056, 0.09597523219814241, 0.08978328173374613, 0.08978328173374613, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09597523219814241, 0.09597523219814241, 0.08978328173374613, 0.0804953560371517, 0.0804953560371517, 0.0804953560371517, 0.0804953560371517, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.08359133126934984, 0.08668730650154799, 0.08359133126934984, 0.08668730650154799, 0.08668730650154799, 0.08668730650154799, 0.09287925696594428, 0.08668730650154799, 0.08668730650154799, 0.08978328173374613, 0.08978328173374613, 0.08978328173374613, 0.09287925696594428, 0.08359133126934984, 0.08359133126934984, 0.07739938080495357, 0.0804953560371517, 0.07739938080495357, 0.07739938080495357, 0.07739938080495357, 0.07739938080495357, 0.07430340557275542, 0.07430340557275542, 0.07430340557275542, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.07430340557275542, 0.08359133126934984, 0.0804953560371517, 0.7708978328173375, 0.7894736842105263, 0.8142414860681114, 0.8297213622291022, 0.8513931888544891, 0.9380804953560371, 0.9473684210526315, 0.9318885448916409, 0.8452012383900929, 0.8235294117647058, 0.804953560371517, 0.7832817337461301, 0.7616099071207431, 0.17956656346749225, 0.19504643962848298, 0.19195046439628483, 0.18575851393188855, 0.18575851393188855, 0.3622291021671827, 0.32507739938080493, 0.43034055727554177, 0.3684210526315789, 0.18575851393188855, 0.6965944272445821, 0.7585139318885449, 0.8606811145510835, 0.9195046439628483, 0.9411764705882353, 0.9442724458204335, 0.9256965944272446, 0.9009287925696594, 0.8080495356037152, 0.7306501547987616, 0.6191950464396285, 0.09287925696594428, 0.17647058823529413, 0.09287925696594428, 0.891640866873065, 0.9102167182662538, 0.8761609907120743, 0.08978328173374613, 0.11764705882352941, 0.10835913312693499, 0.5325077399380805, 0.848297213622291, 0.08359133126934984, 0.08359133126934984, 0.06811145510835913, 0.06811145510835913, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.06811145510835913, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.07120743034055728, 0.07430340557275542, 0.07739938080495357, 0.0804953560371517, 0.08668730650154799, 0.08668730650154799, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.10835913312693499, 0.13003095975232198, 0.24148606811145512, 0.47058823529411764], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/C2-set_2.gap.json b/pfam_gap_rates/C2-set_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf71d866cfbfa0d9323fa32ca5aedd14adc53f4e
--- /dev/null
+++ b/pfam_gap_rates/C2-set_2.gap.json
@@ -0,0 +1 @@
+{"family": "C2-set_2", "n_seqs": 1667, "length": 97, "gap_rates": [0.9406118776244751, 0.9040191961607679, 0.8530293941211757, 0.8308338332333534, 0.8032393521295741, 0.7780443911217756, 0.7546490701859628, 0.7006598680263947, 0.6640671865626875, 0.6232753449310138, 0.5884823035392921, 0.5728854229154169, 0.5182963407318536, 0.8794241151769646, 0.8344331133773245, 0.5266946610677864, 0.3089382123575285, 0.17636472705458908, 0.09838032393521295, 0.0629874025194961, 0.041991601679664065, 0.033593281343731254, 0.01739652069586083, 0.014997000599880024, 0.047390521895620874, 0.01259748050389922, 0.011397720455908818, 0.008998200359928014, 0.008998200359928014, 0.008998200359928014, 0.020395920815836834, 0.015596880623875225, 0.007798440311937612, 0.00599880023995201, 0.00599880023995201, 0.005398920215956809, 0.005398920215956809, 0.005398920215956809, 0.007798440311937612, 0.00599880023995201, 0.00599880023995201, 0.00599880023995201, 0.0065986802639472104, 0.01859628074385123, 0.7588482303539292, 0.8788242351529694, 0.9268146370725855, 0.8950209958008398, 0.8338332333533294, 0.7036592681463707, 0.385122975404919, 0.3047390521895621, 0.21715656868626274, 0.13797240551889622, 0.07858428314337132, 0.05398920215956809, 0.04859028194361128, 0.052789442111577684, 0.05458908218356329, 0.05818836232753449, 0.06898620275944811, 0.07378524295140972, 0.07858428314337132, 0.08098380323935213, 0.08998200359928014, 0.08818236352729454, 0.08518296340731854, 0.08578284343131373, 0.15356928614277143, 0.08098380323935213, 0.07618476304739052, 0.07258548290341932, 0.07018596280743851, 0.07018596280743851, 0.07378524295140972, 0.07618476304739052, 0.08158368326334733, 0.1841631673665267, 0.20335932813437313, 0.1985602879424115, 0.10077984403119376, 0.10257948410317937, 0.10377924415116976, 0.10377924415116976, 0.10497900419916016, 0.10617876424715057, 0.10617876424715057, 0.11037792441511697, 0.11937612477504499, 0.15896820635872824, 0.1949610077984403, 0.2741451709658068, 0.3869226154769046, 0.5302939412117577, 0.6670665866826635, 0.7660467906418716, 0.8926214757048591], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAF1.gap.json b/pfam_gap_rates/CAF1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b416d6c7b6429ac91074754e74032b0c90c1ed83
--- /dev/null
+++ b/pfam_gap_rates/CAF1.gap.json
@@ -0,0 +1 @@
+{"family": "CAF1", "n_seqs": 1425, "length": 495, "gap_rates": [0.5501754385964912, 0.511578947368421, 0.4708771929824561, 0.4575438596491228, 0.447719298245614, 0.4421052631578947, 0.4392982456140351, 0.4357894736842105, 0.43087719298245614, 0.42736842105263156, 0.42526315789473684, 0.4231578947368421, 0.41964912280701755, 0.4182456140350877, 0.4182456140350877, 0.4182456140350877, 0.4168421052631579, 0.416140350877193, 0.416140350877193, 0.416140350877193, 0.41333333333333333, 0.41333333333333333, 0.41192982456140353, 0.40842105263157896, 0.40771929824561404, 0.4056140350877193, 0.4049122807017544, 0.4056140350877193, 0.4, 0.39859649122807017, 0.39859649122807017, 0.39859649122807017, 0.9263157894736842, 0.9361403508771929, 0.847719298245614, 0.7740350877192983, 0.5866666666666667, 0.4392982456140351, 0.41403508771929826, 0.4056140350877193, 0.40350877192982454, 0.40280701754385967, 0.4007017543859649, 0.3992982456140351, 0.39789473684210525, 0.39649122807017545, 0.3971929824561404, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CAP_C.gap.json b/pfam_gap_rates/CAP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..106193aeee941732232f7ca372f269ff6f727595
--- /dev/null
+++ b/pfam_gap_rates/CAP_C.gap.json
@@ -0,0 +1 @@
+{"family": "CAP_C", "n_seqs": 402, "length": 166, "gap_rates": [0.5373134328358209, 0.291044776119403, 0.17661691542288557, 0.17164179104477612, 0.14676616915422885, 0.13681592039800994, 0.1318407960199005, 0.12189054726368159, 0.8034825870646766, 0.11940298507462686, 0.11691542288557213, 0.11442786069651742, 0.11442786069651742, 0.10696517412935323, 0.10199004975124377, 0.0945273631840796, 0.09203980099502487, 0.09203980099502487, 0.11194029850746269, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.9427860696517413, 0.7736318407960199, 0.08706467661691543, 0.05970149253731343, 0.05472636815920398, 0.05472636815920398, 0.06218905472636816, 0.263681592039801, 0.05970149253731343, 0.04477611940298507, 0.03731343283582089, 0.03731343283582089, 0.03482587064676617, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.029850746268656716, 0.029850746268656716, 0.02736318407960199, 0.029850746268656716, 0.02736318407960199, 0.029850746268656716, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03482587064676617, 0.03482587064676617, 0.03233830845771144, 0.029850746268656716, 0.029850746268656716, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.029850746268656716, 0.03233830845771144, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03731343283582089, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.029850746268656716, 0.03233830845771144, 0.03482587064676617, 0.03731343283582089, 0.03731343283582089, 0.03980099502487562, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.0472636815920398, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.0472636815920398, 0.04477611940298507, 0.0472636815920398, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.06218905472636816, 0.06218905472636816, 0.06218905472636816, 0.05970149253731343, 0.06467661691542288, 0.9253731343283582, 0.05721393034825871, 0.05721393034825871, 0.05721393034825871, 0.06218905472636816, 0.06467661691542288, 0.06218905472636816, 0.05970149253731343, 0.06218905472636816, 0.06467661691542288, 0.06467661691542288, 0.06716417910447761, 0.06716417910447761, 0.06965174129353234, 0.06965174129353234, 0.06716417910447761, 0.08208955223880597, 0.08208955223880597, 0.373134328358209, 0.8084577114427861, 0.927860696517413, 0.554726368159204, 0.19402985074626866, 0.0945273631840796, 0.09701492537313433, 0.0945273631840796, 0.09701492537313433, 0.09701492537313433, 0.10199004975124377, 0.11442786069651742, 0.11442786069651742, 0.11691542288557213, 0.12686567164179105, 0.1318407960199005, 0.1318407960199005, 0.1318407960199005, 0.1318407960199005, 0.13432835820895522, 0.13432835820895522, 0.13432835820895522, 0.13432835820895522, 0.8383084577114428, 0.7860696517412935, 0.13681592039800994, 0.15671641791044777, 0.15671641791044777, 0.16169154228855723, 0.1691542288557214, 0.17164179104477612, 0.17661691542288557, 0.1890547263681592, 0.21890547263681592, 0.2562189054726368, 0.3009950248756219, 0.5497512437810945], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_1.gap.json b/pfam_gap_rates/CBM_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66b7d09a4f3630156342be51bacdcaa0fb19ebf5
--- /dev/null
+++ b/pfam_gap_rates/CBM_1.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_1", "n_seqs": 1307, "length": 29, "gap_rates": [0.3152257077276205, 0.046671767406273906, 0.029074215761285386, 0.02142310635042081, 0.013771996939556235, 0.0076511094108645756, 0.0045906656465187455, 0.0038255547054322878, 0.001530221882172915, 0.0007651109410864575, 0.0022953328232593728, 0.001530221882172915, 0.0007651109410864575, 0.0, 0.001530221882172915, 0.0022953328232593728, 0.0045906656465187455, 0.0076511094108645756, 0.009946442234123947, 0.13083397092578425, 0.014537107880642693, 0.016832440703902066, 0.020657995409334353, 0.026013771996939557, 0.03978576893649579, 0.047436878347360364, 0.0665646518745218, 0.08951798010711554, 0.11859219586840092], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_11.gap.json b/pfam_gap_rates/CBM_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab71c378b5689c9381cd25f271c3d2710473b49a
--- /dev/null
+++ b/pfam_gap_rates/CBM_11.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_4_9.gap.json b/pfam_gap_rates/CBM_4_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f736922241be02d861256777018fbee72db1f7b
--- /dev/null
+++ b/pfam_gap_rates/CBM_4_9.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_4_9", "n_seqs": 1191, "length": 176, "gap_rates": [0.8236775818639799, 0.35768261964735515, 0.23173803526448364, 0.17548278757346766, 0.15029387069689337, 0.12846347607052896, 0.10747271200671704, 0.08900083963056256, 0.0873215785054576, 0.08648194794290512, 0.08312342569269521, 0.832913518052057, 0.8942065491183879, 0.9168765743073047, 0.9353484466834593, 0.9227539882451721, 0.9118387909319899, 0.8639798488664987, 0.7951301427371956, 0.5768261964735516, 0.07976490344248531, 0.06465155331654072, 0.05877413937867338, 0.05373635600335852, 0.051217464315701094, 0.04869857262804366, 0.04869857262804366, 0.04617968094038623, 0.04617968094038623, 0.047019311502938706, 0.07976490344248531, 0.42401343408900083, 0.8261964735516373, 0.8841309823677582, 0.9202350965575147, 0.9361880772460117, 0.9462636439966414, 0.9445843828715366, 0.9319899244332494, 0.9026028547439127, 0.8631402183039463, 0.7959697732997482, 0.29303106633081444, 0.19395465994962216, 0.09907640638119228, 0.07472712006717044, 0.06633081444164568, 0.07052896725440806, 0.07556675062972293, 0.02938706968933669, 0.4794290512174643, 0.7036104114189756, 0.853904282115869, 0.9034424853064652, 0.9235936188077246, 0.8849706129303107, 0.7842149454240135, 0.6078925272879933, 0.3157010915197313, 0.02518891687657431, 0.02434928631402183, 0.0218303946263644, 0.022670025188916875, 0.023509655751469353, 0.020990764063811923, 0.055415617128463476, 0.026028547439126783, 0.01595298068849706, 0.015113350125944584, 0.019311502938706968, 0.04534005037783375, 0.036943744752308987, 0.9126784214945424, 0.9429051217464316, 0.6439966414777498, 0.12426532325776658, 0.09907640638119228, 0.0327455919395466, 0.020151133501259445, 0.01343408900083963, 0.02938706968933669, 0.018471872376154493, 0.01343408900083963, 0.011754827875734676, 0.14693534844668346, 0.9487825356842989, 0.8866498740554156, 0.0654911838790932, 0.0033585222502099076, 0.0016792611251049538, 0.0016792611251049538, 0.0025188916876574307, 0.0016792611251049538, 0.007556675062972292, 0.0041981528127623844, 0.0025188916876574307, 0.0025188916876574307, 0.0025188916876574307, 0.0025188916876574307, 0.0033585222502099076, 0.0025188916876574307, 0.0025188916876574307, 0.0033585222502099076, 0.005037783375314861, 0.07136859781696053, 0.0688497061293031, 0.0688497061293031, 0.6112510495382032, 0.8052057094878253, 0.9311502938706969, 0.7027707808564232, 0.4979009235936188, 0.04450041981528128, 0.038623005877413935, 0.023509655751469353, 0.01343408900083963, 0.015113350125944584, 0.01595298068849706, 0.020151133501259445, 0.019311502938706968, 0.0218303946263644, 0.02434928631402183, 0.037783375314861464, 0.041981528127623846, 0.5088161209068011, 0.7111670864819479, 0.9429051217464316, 0.8337531486146096, 0.6364399664147775, 0.26028547439126787, 0.21074727120067172, 0.1343408900083963, 0.06633081444164568, 0.05877413937867338, 0.061293031066330814, 0.109151973131822, 0.37279596977329976, 0.8858102434928632, 0.7489504617968094, 0.08480268681780016, 0.06633081444164568, 0.051217464315701094, 0.05037783375314862, 0.04953820319059614, 0.8782535684298909, 0.051217464315701094, 0.04617968094038623, 0.04617968094038623, 0.04617968094038623, 0.04617968094038623, 0.04617968094038623, 0.047019311502938706, 0.04785894206549118, 0.05373635600335852, 0.05793450881612091, 0.06297229219143577, 0.06381192275398824, 0.06801007556675064, 0.9093198992443325, 0.6801007556675063, 0.14357682619647355, 0.11418975650713686, 0.12762384550797648, 0.14357682619647355, 0.1528127623845508, 0.15449202350965574, 0.16624685138539042, 0.18219983207388749, 0.21074727120067172, 0.22921914357682618, 0.28547439126784213, 0.33837111670864817, 0.6204869857262805, 0.7187237615449202, 0.8589420654911839, 0.9227539882451721], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBS.gap.json b/pfam_gap_rates/CBS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eae00c84d05885057b54ed84290a264182da612c
--- /dev/null
+++ b/pfam_gap_rates/CBS.gap.json
@@ -0,0 +1 @@
+{"family": "CBS", "n_seqs": 5000, "length": 63, "gap_rates": [0.646, 0.5022, 0.427, 0.3844, 0.3366, 0.3064, 0.2048, 0.918, 0.8864, 0.1238, 0.0858, 0.0814, 0.0348, 0.0234, 0.0198, 0.017, 0.0136, 0.0118, 0.0096, 0.0082, 0.0068, 0.0056, 0.0042, 0.0028, 0.0036, 0.0038, 0.003, 0.1192, 0.0328, 0.0384, 0.0352, 0.9348, 0.8484, 0.0334, 0.109, 0.0018, 0.0026, 0.1002, 0.0008, 0.0052, 0.9302, 0.829, 0.1672, 0.0538, 0.0124, 0.0164, 0.9236, 0.046, 0.0038, 0.0044, 0.0068, 0.0072, 0.0106, 0.0192, 0.0284, 0.0356, 0.044, 0.0612, 0.126, 0.237, 0.3664, 0.5152, 0.7456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDC45.gap.json b/pfam_gap_rates/CDC45.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aee54ebef4226317c7c80860248122d2a460ec81
--- /dev/null
+++ b/pfam_gap_rates/CDC45.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CDI.gap.json b/pfam_gap_rates/CDI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6c2b5c1a4779d97dd28a9e071e669181c5ea917
--- /dev/null
+++ b/pfam_gap_rates/CDI.gap.json
@@ -0,0 +1 @@
+{"family": "CDI", "n_seqs": 292, "length": 53, "gap_rates": [0.660958904109589, 0.5547945205479452, 0.5136986301369864, 0.3184931506849315, 0.16095890410958905, 0.1506849315068493, 0.136986301369863, 0.1095890410958904, 0.0958904109589041, 0.4828767123287671, 0.06506849315068493, 0.05821917808219178, 0.04794520547945205, 0.03424657534246575, 0.0273972602739726, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.0136986301369863, 0.00684931506849315, 0.00684931506849315, 0.017123287671232876, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003424657534246575, 0.003424657534246575, 0.00684931506849315, 0.023972602739726026, 0.0273972602739726, 0.030821917808219176, 0.030821917808219176, 0.8561643835616438, 0.9452054794520548, 0.7568493150684932, 0.04452054794520548, 0.05136986301369863, 0.9486301369863014, 0.06164383561643835, 0.07534246575342465, 0.09246575342465753, 0.1267123287671233, 0.2328767123287671, 0.3287671232876712], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CENP-B_N.gap.json b/pfam_gap_rates/CENP-B_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f58c3df67afc1ff29f396ded82ff5d169f0bc914
--- /dev/null
+++ b/pfam_gap_rates/CENP-B_N.gap.json
@@ -0,0 +1 @@
+{"family": "CENP-B_N", "n_seqs": 546, "length": 54, "gap_rates": [0.5769230769230769, 0.40293040293040294, 0.21428571428571427, 0.19047619047619047, 0.15384615384615385, 0.1391941391941392, 0.12637362637362637, 0.12087912087912088, 0.10622710622710622, 0.07509157509157509, 0.06043956043956044, 0.04945054945054945, 0.045787545787545784, 0.027472527472527472, 0.016483516483516484, 0.016483516483516484, 0.009157509157509158, 0.009157509157509158, 0.009157509157509158, 0.009157509157509158, 0.016483516483516484, 0.014652014652014652, 0.003663003663003663, 0.8040293040293041, 0.6355311355311355, 0.009157509157509158, 0.0018315018315018315, 0.007326007326007326, 0.0018315018315018315, 0.0018315018315018315, 0.0, 0.0, 0.0018315018315018315, 0.0, 0.0, 0.0, 0.0018315018315018315, 0.0018315018315018315, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.005494505494505495, 0.009157509157509158, 0.01282051282051282, 0.01282051282051282, 0.020146520146520148, 0.031135531135531136, 0.045787545787545784, 0.056776556776556776, 0.08791208791208792, 0.1282051282051282, 0.25457875457875456, 0.4249084249084249, 0.7051282051282052], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CENP-I.gap.json b/pfam_gap_rates/CENP-I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07f8655c189508f19462f08182f96d3e384414c4
--- /dev/null
+++ b/pfam_gap_rates/CENP-I.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CENP-N.gap.json b/pfam_gap_rates/CENP-N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..535b923cdc4c79c3ffaaadf7c642969c15030fdf
--- /dev/null
+++ b/pfam_gap_rates/CENP-N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CIA30.gap.json b/pfam_gap_rates/CIA30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c64d367e48c29e9730032241783d3421589a98ea
--- /dev/null
+++ b/pfam_gap_rates/CIA30.gap.json
@@ -0,0 +1 @@
+{"family": "CIA30", "n_seqs": 686, "length": 213, "gap_rates": [0.7055393586005831, 0.5451895043731778, 0.49854227405247814, 0.4737609329446064, 0.4606413994169096, 0.45043731778425655, 0.43440233236151604, 0.9314868804664723, 0.33527696793002915, 0.28717201166180756, 0.23469387755102042, 0.18950437317784258, 0.9402332361516035, 0.1661807580174927, 0.16472303206997085, 0.16326530612244897, 0.15743440233236153, 0.15743440233236153, 0.15451895043731778, 0.15451895043731778, 0.15306122448979592, 0.1326530612244898, 0.1282798833819242, 0.9183673469387755, 0.12682215743440234, 0.12536443148688048, 0.119533527696793, 0.1151603498542274, 0.09620991253644315, 0.09475218658892129, 0.09329446064139942, 0.09183673469387756, 0.09037900874635568, 0.21282798833819241, 0.4970845481049563, 0.1588921282798834, 0.6428571428571429, 0.749271137026239, 0.8396501457725948, 0.8819241982507289, 0.9110787172011662, 0.9285714285714286, 0.9460641399416909, 0.9373177842565598, 0.9183673469387755, 0.8965014577259475, 0.8717201166180758, 0.7900874635568513, 0.7230320699708455, 0.6355685131195336, 0.09329446064139942, 0.08309037900874636, 0.07871720116618076, 0.06997084548104957, 0.06851311953352769, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06851311953352769, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.0641399416909621, 0.49271137026239065, 0.60932944606414, 0.619533527696793, 0.7711370262390671, 0.9169096209912536, 0.6239067055393586, 0.6107871720116618, 0.5903790087463557, 0.4606413994169096, 0.17201166180758018, 0.11224489795918367, 0.0597667638483965, 0.056851311953352766, 0.05830903790087463, 0.05830903790087463, 0.056851311953352766, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.641399416909621, 0.6778425655976676, 0.7565597667638484, 0.6895043731778425, 0.6705539358600583, 0.5743440233236151, 0.2944606413994169, 0.21865889212827988, 0.10641399416909621, 0.06268221574344024, 0.0597667638483965, 0.056851311953352766, 0.05539358600583091, 0.05393586005830904, 0.05393586005830904, 0.05830903790087463, 0.05539358600583091, 0.05393586005830904, 0.05393586005830904, 0.05102040816326531, 0.05102040816326531, 0.05102040816326531, 0.048104956268221574, 0.04956268221574344, 0.05393586005830904, 0.052478134110787174, 0.8790087463556852, 0.9446064139941691, 0.8177842565597667, 0.061224489795918366, 0.061224489795918366, 0.0597667638483965, 0.0597667638483965, 0.061224489795918366, 0.0597667638483965, 0.05830903790087463, 0.056851311953352766, 0.05830903790087463, 0.056851311953352766, 0.056851311953352766, 0.05539358600583091, 0.05539358600583091, 0.0641399416909621, 0.07142857142857142, 0.6588921282798834, 0.8513119533527697, 0.9067055393586005, 0.9125364431486881, 0.8600583090379009, 0.8338192419825073, 0.6122448979591837, 0.521865889212828, 0.09912536443148688, 0.07580174927113703, 0.06705539358600583, 0.0641399416909621, 0.05830903790087463, 0.05830903790087463, 0.0597667638483965, 0.056851311953352766, 0.05393586005830904, 0.05539358600583091, 0.048104956268221574, 0.9460641399416909, 0.06268221574344024, 0.13411078717201166, 0.826530612244898, 0.056851311953352766, 0.052478134110787174, 0.15306122448979592, 0.7871720116618076, 0.07434402332361516, 0.05539358600583091, 0.05539358600583091, 0.056851311953352766, 0.05393586005830904, 0.052478134110787174, 0.0597667638483965, 0.061224489795918366, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.0597667638483965, 0.06851311953352769, 0.0728862973760933, 0.09766763848396501, 0.13411078717201166, 0.14285714285714285, 0.17638483965014579, 0.17055393586005832, 0.16909620991253643, 0.2055393586005831, 0.17055393586005832, 0.17055393586005832, 0.16763848396501457, 0.1457725947521866, 0.1457725947521866, 0.141399416909621, 0.13848396501457727, 0.13848396501457727, 0.13994169096209913, 0.13994169096209913, 0.141399416909621, 0.14431486880466474, 0.1457725947521866, 0.15160349854227406, 0.15160349854227406, 0.15451895043731778, 0.15597667638483964, 0.16034985422740525, 0.6282798833819242, 0.7521865889212828, 0.7667638483965015, 0.7842565597667639, 0.8294460641399417, 0.8236151603498543, 0.7813411078717201, 0.7580174927113703, 0.6384839650145773, 0.6253644314868805, 0.1880466472303207, 0.20699708454810495, 0.24927113702623907, 0.23760932944606414, 0.24052478134110788, 0.25072886297376096, 0.25510204081632654, 0.260932944606414, 0.2696793002915452, 0.3206997084548105, 0.4271137026239067], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CLP_protease.gap.json b/pfam_gap_rates/CLP_protease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fceab2b0dedf0da2003ab6c9b12b7a0aaf84828
--- /dev/null
+++ b/pfam_gap_rates/CLP_protease.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CMS1.gap.json b/pfam_gap_rates/CMS1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..540fe15ccb0b4002272f17c545e2230170bfabb5
--- /dev/null
+++ b/pfam_gap_rates/CMS1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CNOT1_HEAT.gap.json b/pfam_gap_rates/CNOT1_HEAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bee578de7cb0089b0ae323e5a7114384ec238ad3
--- /dev/null
+++ b/pfam_gap_rates/CNOT1_HEAT.gap.json
@@ -0,0 +1 @@
+{"family": "CNOT1_HEAT", "n_seqs": 307, "length": 179, "gap_rates": [0.8143322475570033, 0.3322475570032573, 0.23452768729641693, 0.16612377850162866, 0.11074918566775244, 0.09120521172638436, 0.06514657980456026, 0.06514657980456026, 0.9478827361563518, 0.06188925081433225, 0.05863192182410423, 0.048859934853420196, 0.048859934853420196, 0.06514657980456026, 0.9446254071661238, 0.742671009771987, 0.1563517915309446, 0.04560260586319218, 0.03908794788273615, 0.06840390879478828, 0.04560260586319218, 0.04560260586319218, 0.03257328990228013, 0.9446254071661238, 0.9283387622149837, 0.03257328990228013, 0.03257328990228013, 0.03257328990228013, 0.035830618892508145, 0.029315960912052116, 0.029315960912052116, 0.9218241042345277, 0.9381107491856677, 0.9478827361563518, 0.9218241042345277, 0.9153094462540716, 0.029315960912052116, 0.05537459283387622, 0.02280130293159609, 0.7915309446254072, 0.8306188925081434, 0.8925081433224755, 0.8859934853420195, 0.8078175895765473, 0.7785016286644951, 0.029315960912052116, 0.029315960912052116, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.019543973941368076, 0.019543973941368076, 0.019543973941368076, 0.016286644951140065, 0.016286644951140065, 0.06840390879478828, 0.09771986970684039, 0.029315960912052116, 0.026058631921824105, 0.019543973941368076, 0.016286644951140065, 0.7100977198697068, 0.8729641693811075, 0.745928338762215, 0.6742671009771987, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.016286644951140065, 0.016286644951140065, 0.013029315960912053, 0.009771986970684038, 0.009771986970684038, 0.013029315960912053, 0.9315960912052117, 0.8859934853420195, 0.013029315960912053, 0.006514657980456026, 0.009771986970684038, 0.009771986970684038, 0.009771986970684038, 0.006514657980456026, 0.006514657980456026, 0.006514657980456026, 0.1498371335504886, 0.8990228013029316, 0.016286644951140065, 0.09446254071661238, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.019543973941368076, 0.019543973941368076, 0.019543973941368076, 0.019543973941368076, 0.019543973941368076, 0.019543973941368076, 0.019543973941368076, 0.019543973941368076, 0.019543973941368076, 0.019543973941368076, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.03908794788273615, 0.026058631921824105, 0.14006514657980457, 0.048859934853420196, 0.05211726384364821, 0.9446254071661238, 0.9120521172638436, 0.029315960912052116, 0.029315960912052116, 0.029315960912052116, 0.03257328990228013, 0.035830618892508145, 0.03908794788273615, 0.03908794788273615, 0.03908794788273615, 0.04234527687296417, 0.04234527687296417, 0.04560260586319218, 0.10097719869706841, 0.04560260586319218, 0.05211726384364821, 0.05211726384364821, 0.05863192182410423, 0.06188925081433225, 0.13355048859934854, 0.21172638436482086, 0.39087947882736157, 0.9250814332247557, 0.9478827361563518, 0.9381107491856677, 0.8534201954397395, 0.5570032573289903, 0.5504885993485342, 0.46254071661237783, 0.33876221498371334, 0.3517915309446254, 0.33876221498371334, 0.2768729641693811, 0.21498371335504887, 0.16938110749185667, 0.13680781758957655, 0.12052117263843648, 0.11726384364820847, 0.11726384364820847, 0.1237785016286645, 0.1237785016286645, 0.1237785016286645, 0.1270358306188925, 0.13029315960912052, 0.13029315960912052, 0.13029315960912052, 0.13029315960912052, 0.13355048859934854, 0.13355048859934854, 0.14006514657980457, 0.1465798045602606, 0.16612377850162866, 0.1791530944625407, 0.4527687296416938], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COBRA1.gap.json b/pfam_gap_rates/COBRA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80dbbc4646b0aa0b3063d301d694ab09d8e0894e
--- /dev/null
+++ b/pfam_gap_rates/COBRA1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COG4.gap.json b/pfam_gap_rates/COG4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22006339e2e8f70fa0ffd36ae07b0b63d3f34d03
--- /dev/null
+++ b/pfam_gap_rates/COG4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COG7.gap.json b/pfam_gap_rates/COG7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76c3843c5b7579eec4021d2fba0fc9d9b75e73aa
--- /dev/null
+++ b/pfam_gap_rates/COG7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COP-gamma_platf.gap.json b/pfam_gap_rates/COP-gamma_platf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..857c1451f5c8d5e4a671b9a7cea3321a6a5f09e7
--- /dev/null
+++ b/pfam_gap_rates/COP-gamma_platf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COX15-CtaA.gap.json b/pfam_gap_rates/COX15-CtaA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c76e8163f777a77818f6c0e7ead18992f7f0e2f
--- /dev/null
+++ b/pfam_gap_rates/COX15-CtaA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COX4.gap.json b/pfam_gap_rates/COX4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..59527d391712f4bbef48d3e12edf984870038268
--- /dev/null
+++ b/pfam_gap_rates/COX4.gap.json
@@ -0,0 +1 @@
+{"family": "COX4", "n_seqs": 278, "length": 144, "gap_rates": [0.8669064748201439, 0.5359712230215827, 0.4244604316546763, 0.381294964028777, 0.3129496402877698, 0.30935251798561153, 0.29136690647482016, 0.25539568345323743, 0.20863309352517986, 0.20503597122302158, 0.15467625899280577, 0.5683453237410072, 0.5719424460431655, 0.5431654676258992, 0.11510791366906475, 0.11151079136690648, 0.1079136690647482, 0.10431654676258993, 0.10431654676258993, 0.09712230215827339, 0.10071942446043165, 0.6007194244604317, 0.5971223021582733, 0.5971223021582733, 0.5935251798561151, 0.8633093525179856, 0.07194244604316546, 0.0683453237410072, 0.06474820143884892, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.04316546762589928, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.05755395683453238, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.05755395683453238, 0.06115107913669065, 0.06115107913669065, 0.06115107913669065, 0.06115107913669065, 0.06474820143884892, 0.06474820143884892, 0.07553956834532374, 0.07194244604316546, 0.06474820143884892, 0.0683453237410072, 0.0683453237410072, 0.7410071942446043, 0.06474820143884892, 0.0683453237410072, 0.06115107913669065, 0.06115107913669065, 0.05755395683453238, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.050359712230215826, 0.0539568345323741, 0.05755395683453238, 0.05755395683453238, 0.06474820143884892, 0.06474820143884892, 0.0683453237410072, 0.0683453237410072, 0.07553956834532374, 0.08633093525179857, 0.5611510791366906, 0.1223021582733813, 0.09352517985611511, 0.09352517985611511, 0.10071942446043165, 0.09712230215827339, 0.09712230215827339, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09712230215827339, 0.09352517985611511, 0.09352517985611511, 0.09712230215827339, 0.09712230215827339, 0.09712230215827339, 0.09712230215827339, 0.09712230215827339, 0.09712230215827339, 0.10071942446043165, 0.10071942446043165, 0.10431654676258993, 0.10431654676258993, 0.10431654676258993, 0.11870503597122302, 0.12949640287769784, 0.12949640287769784, 0.14028776978417265, 0.20503597122302158, 0.2517985611510791, 0.26618705035971224, 0.6474820143884892, 0.30935251798561153, 0.3129496402877698, 0.3273381294964029, 0.3273381294964029, 0.30935251798561153, 0.3237410071942446, 0.35611510791366907, 0.4316546762589928, 0.4784172661870504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX6A.gap.json b/pfam_gap_rates/COX6A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75cdc260558b3eb5314234c8b46958cb608cecb5
--- /dev/null
+++ b/pfam_gap_rates/COX6A.gap.json
@@ -0,0 +1 @@
+{"family": "COX6A", "n_seqs": 265, "length": 126, "gap_rates": [0.8528301886792453, 0.769811320754717, 0.6981132075471698, 0.6679245283018868, 0.6452830188679245, 0.6188679245283019, 0.6113207547169811, 0.6150943396226415, 0.5962264150943396, 0.5849056603773585, 0.5886792452830188, 0.5962264150943396, 0.7132075471698113, 0.7169811320754716, 0.7358490566037735, 0.6490566037735849, 0.8641509433962264, 0.9018867924528302, 0.9320754716981132, 0.9433962264150944, 0.9056603773584906, 0.8905660377358491, 0.8415094339622642, 0.539622641509434, 0.4641509433962264, 0.4075471698113208, 0.39245283018867927, 0.38113207547169814, 0.37358490566037733, 0.36981132075471695, 0.3584905660377358, 0.3584905660377358, 0.33962264150943394, 0.32075471698113206, 0.2943396226415094, 0.2679245283018868, 0.2490566037735849, 0.22641509433962265, 0.2037735849056604, 0.19622641509433963, 0.15849056603773584, 0.1509433962264151, 0.1509433962264151, 0.11320754716981132, 0.08679245283018867, 0.06792452830188679, 0.06415094339622641, 0.06415094339622641, 0.06415094339622641, 0.06037735849056604, 0.05660377358490566, 0.0830188679245283, 0.06037735849056604, 0.05660377358490566, 0.052830188679245285, 0.045283018867924525, 0.04150943396226415, 0.045283018867924525, 0.06037735849056604, 0.05660377358490566, 0.06792452830188679, 0.04905660377358491, 0.09056603773584905, 0.10943396226415095, 0.12075471698113208, 0.0830188679245283, 0.05660377358490566, 0.13584905660377358, 0.16981132075471697, 0.13584905660377358, 0.10943396226415095, 0.1018867924528302, 0.10943396226415095, 0.14339622641509434, 0.16981132075471697, 0.2, 0.2641509433962264, 0.26037735849056604, 0.2339622641509434, 0.25660377358490566, 0.21509433962264152, 0.9018867924528302, 0.909433962264151, 0.909433962264151, 0.9018867924528302, 0.8830188679245283, 0.32075471698113206, 0.23018867924528302, 0.05660377358490566, 0.04150943396226415, 0.03018867924528302, 0.9018867924528302, 0.9018867924528302, 0.8905660377358491, 0.018867924528301886, 0.01509433962264151, 0.007547169811320755, 0.0037735849056603774, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.01509433962264151, 0.011320754716981131, 0.15849056603773584, 0.2339622641509434, 0.10566037735849057, 0.1018867924528302, 0.1018867924528302, 0.12075471698113208, 0.12452830188679245, 0.13584905660377358, 0.16226415094339622, 0.1660377358490566, 0.17358490566037735, 0.19245283018867926, 0.2830188679245283, 0.29056603773584905, 0.5358490566037736, 0.6792452830188679, 0.7924528301886793], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX7a.gap.json b/pfam_gap_rates/COX7a.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54eaac8ed9677dbe4665dce60008b354d44805c2
--- /dev/null
+++ b/pfam_gap_rates/COX7a.gap.json
@@ -0,0 +1 @@
+{"family": "COX7a", "n_seqs": 222, "length": 56, "gap_rates": [0.10810810810810811, 0.06306306306306306, 0.04054054054054054, 0.036036036036036036, 0.02252252252252252, 0.02252252252252252, 0.018018018018018018, 0.009009009009009009, 0.009009009009009009, 0.0045045045045045045, 0.0, 0.0, 0.8423423423423423, 0.8378378378378378, 0.16666666666666666, 0.0, 0.0, 0.28378378378378377, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013513513513513514, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02252252252252252, 0.6261261261261262, 0.02252252252252252, 0.0, 0.0, 0.0045045045045045045, 0.009009009009009009, 0.013513513513513514, 0.0045045045045045045, 0.013513513513513514, 0.013513513513513514, 0.02252252252252252, 0.02702702702702703, 0.03153153153153153, 0.04054054054054054, 0.04954954954954955, 0.05405405405405406, 0.06756756756756757, 0.12162162162162163, 0.15765765765765766, 0.21621621621621623, 0.28378378378378377, 0.3153153153153153], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX_ARM.gap.json b/pfam_gap_rates/COX_ARM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..afd340f8286222d1e78a3c395bac13262fd27ae5
--- /dev/null
+++ b/pfam_gap_rates/COX_ARM.gap.json
@@ -0,0 +1 @@
+{"family": "COX_ARM", "n_seqs": 212, "length": 49, "gap_rates": [0.20754716981132076, 0.14622641509433962, 0.09433962264150944, 0.06132075471698113, 0.03773584905660377, 0.02830188679245283, 0.018867924528301886, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.8584905660377359, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.009433962264150943, 0.9481132075471698, 0.9433962264150944, 0.014150943396226415, 0.0047169811320754715, 0.0, 0.02830188679245283, 0.0047169811320754715, 0.04245283018867924, 0.0, 0.014150943396226415, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0047169811320754715, 0.0, 0.0, 0.0, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.02830188679245283, 0.04716981132075472, 0.08018867924528301, 0.09433962264150944, 0.1509433962264151, 0.33962264150943394, 0.5754716981132075], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CPDase.gap.json b/pfam_gap_rates/CPDase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0f78ab7307d1017d5741646053ae6cc85991fc4
--- /dev/null
+++ b/pfam_gap_rates/CPDase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CPSase_L_D3.gap.json b/pfam_gap_rates/CPSase_L_D3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6ce3f488777c7943955606d2435c6ac3f445d25
--- /dev/null
+++ b/pfam_gap_rates/CPSase_L_D3.gap.json
@@ -0,0 +1 @@
+{"family": "CPSase_L_D3", "n_seqs": 2446, "length": 132, "gap_rates": [0.23548650858544562, 0.07440719542109567, 0.040474243663123466, 0.024529844644317254, 0.017170891251022075, 0.01553556827473426, 0.014717906786590351, 0.014717906786590351, 0.014717906786590351, 0.014717906786590351, 0.014717906786590351, 0.014717906786590351, 0.014717906786590351, 0.014717906786590351, 0.014717906786590351, 0.013900245298446443, 0.013082583810302535, 0.9382665576451349, 0.013082583810302535, 0.01349141455437449, 0.012673753066230581, 0.012264922322158627, 0.012264922322158627, 0.012264922322158627, 0.012264922322158627, 0.011856091578086671, 0.011856091578086671, 0.011447260834014717, 0.011447260834014717, 0.011447260834014717, 0.011447260834014717, 0.011447260834014717, 0.011447260834014717, 0.011447260834014717, 0.011447260834014717, 0.011447260834014717, 0.011447260834014717, 0.011856091578086671, 0.011447260834014717, 0.011447260834014717, 0.011038430089942763, 0.011038430089942763, 0.011038430089942763, 0.011038430089942763, 0.011038430089942763, 0.011447260834014717, 0.011038430089942763, 0.011038430089942763, 0.011038430089942763, 0.011038430089942763, 0.012264922322158627, 0.012673753066230581, 0.01349141455437449, 0.015126737530662305, 0.03434178250204415, 0.33892068683565, 0.7902698282910875, 0.9423548650858544, 0.910874897792314, 0.4382665576451349, 0.21749795584627965, 0.03761242845461979, 0.029844644317252658, 0.0241210139002453, 0.02330335241210139, 0.013082583810302535, 0.012673753066230581, 0.011856091578086671, 0.011856091578086671, 0.011856091578086671, 0.011856091578086671, 0.011856091578086671, 0.011856091578086671, 0.012264922322158627, 0.011856091578086671, 0.012264922322158627, 0.013082583810302535, 0.013082583810302535, 0.012673753066230581, 0.012673753066230581, 0.012673753066230581, 0.012673753066230581, 0.013082583810302535, 0.015126737530662305, 0.9096484055600981, 0.9206868356500408, 0.9370400654129191, 0.9141455437448897, 0.9059689288634505, 0.6320523303352412, 0.43908421913327883, 0.6324611610793132, 0.08135731807031889, 0.033524121013900246, 0.03679476696647588, 0.03107113654946852, 0.02902698282910875, 0.02616516762060507, 0.025347506132461162, 0.02616516762060507, 0.02616516762060507, 0.020850367947669663, 0.02739165985282093, 0.023712183156173343, 0.022894521668029435, 0.022076860179885527, 0.024529844644317254, 0.014717906786590351, 0.012673753066230581, 0.012673753066230581, 0.012673753066230581, 0.013082583810302535, 0.012673753066230581, 0.012673753066230581, 0.012264922322158627, 0.012264922322158627, 0.012264922322158627, 0.012264922322158627, 0.014309076042518397, 0.017170891251022075, 0.050695012264922325, 0.04987735077677841, 0.044153720359771054, 0.012673753066230581, 0.012673753066230581, 0.012673753066230581, 0.013082583810302535, 0.013900245298446443, 0.014717906786590351, 0.016353229762878167, 0.0241210139002453, 0.050695012264922325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRIC_ras_sig.gap.json b/pfam_gap_rates/CRIC_ras_sig.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca97be67ead0ac4845d51a7bde620cfbe33deb33
--- /dev/null
+++ b/pfam_gap_rates/CRIC_ras_sig.gap.json
@@ -0,0 +1 @@
+{"family": "CRIC_ras_sig", "n_seqs": 107, "length": 97, "gap_rates": [0.14018691588785046, 0.08411214953271028, 0.07476635514018691, 0.06542056074766354, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.06542056074766354, 0.06542056074766354, 0.2616822429906542, 0.2523364485981308, 0.2616822429906542, 0.2897196261682243, 0.3364485981308411, 0.32710280373831774, 0.29906542056074764, 0.8504672897196262, 0.9439252336448598, 0.9252336448598131, 0.8411214953271028, 0.102803738317757, 0.037383177570093455, 0.04672897196261682, 0.037383177570093455, 0.028037383177570093, 0.018691588785046728, 0.018691588785046728, 0.009345794392523364, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.0, 0.0, 0.0, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.14953271028037382, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.056074766355140186, 0.07476635514018691, 0.11214953271028037, 0.18691588785046728, 0.27102803738317754, 0.5233644859813084, 0.719626168224299], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CSTF1_dimer.gap.json b/pfam_gap_rates/CSTF1_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4fc55409eda4690dff541fcb4b959748a2a09b35
--- /dev/null
+++ b/pfam_gap_rates/CSTF1_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "CSTF1_dimer", "n_seqs": 103, "length": 57, "gap_rates": [0.7669902912621359, 0.2912621359223301, 0.1941747572815534, 0.18446601941747573, 0.1650485436893204, 0.1650485436893204, 0.14563106796116504, 0.10679611650485436, 0.0970873786407767, 0.0970873786407767, 0.08737864077669903, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.038834951456310676, 0.019417475728155338, 0.019417475728155338, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.0, 0.0, 0.0, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.7281553398058253, 0.009708737864077669, 0.009708737864077669, 0.02912621359223301, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.02912621359223301, 0.038834951456310676, 0.04854368932038835, 0.04854368932038835, 0.05825242718446602, 0.07766990291262135, 0.3106796116504854], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CSTF2_hinge.gap.json b/pfam_gap_rates/CSTF2_hinge.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7ee1fdc7e7db6367caca6e67cb35c135da7bdea
--- /dev/null
+++ b/pfam_gap_rates/CSTF2_hinge.gap.json
@@ -0,0 +1 @@
+{"family": "CSTF2_hinge", "n_seqs": 388, "length": 82, "gap_rates": [0.8092783505154639, 0.47164948453608246, 0.43556701030927836, 0.4381443298969072, 0.4252577319587629, 0.39690721649484534, 0.36082474226804123, 0.35051546391752575, 0.33505154639175255, 0.31958762886597936, 0.9226804123711341, 0.5077319587628866, 0.2345360824742268, 0.2036082474226804, 0.1958762886597938, 0.17010309278350516, 0.13659793814432988, 0.11597938144329897, 0.1134020618556701, 0.1056701030927835, 0.09536082474226804, 0.08247422680412371, 0.06443298969072164, 0.05670103092783505, 0.03865979381443299, 0.028350515463917526, 0.023195876288659795, 0.020618556701030927, 0.01288659793814433, 0.010309278350515464, 0.007731958762886598, 0.007731958762886598, 0.007731958762886598, 0.007731958762886598, 0.007731958762886598, 0.007731958762886598, 0.007731958762886598, 0.005154639175257732, 0.010309278350515464, 0.010309278350515464, 0.041237113402061855, 0.03865979381443299, 0.03865979381443299, 0.002577319587628866, 0.002577319587628866, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002577319587628866, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005154639175257732, 0.005154639175257732, 0.010309278350515464, 0.015463917525773196, 0.01804123711340206, 0.01804123711340206, 0.028350515463917526, 0.03865979381443299, 0.05154639175257732, 0.07216494845360824, 0.09278350515463918, 0.10824742268041238, 0.12371134020618557, 0.18556701030927836, 0.2912371134020619, 0.3556701030927835, 0.6288659793814433], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CTP_transf_1.gap.json b/pfam_gap_rates/CTP_transf_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8cefa8d73f55f5a7afb4438617a1c037ee98b734
--- /dev/null
+++ b/pfam_gap_rates/CTP_transf_1.gap.json
@@ -0,0 +1 @@
+{"family": "CTP_transf_1", "n_seqs": 2631, "length": 357, "gap_rates": [0.7510452299505891, 0.3128088179399468, 0.22881033827442038, 0.18852147472443936, 0.16989737742303307, 0.15203344735841884, 0.14443177499049792, 0.1402508551881414, 0.13492968453059673, 0.1258076776890916, 0.12466742683390346, 0.12352717597871532, 0.12352717597871532, 0.12352717597871532, 0.12200684150513112, 0.12048650703154694, 0.11858608893956671, 0.11630558722919042, 0.11592550361079437, 0.11250475104522994, 0.11098441657164576, 0.11554541999239833, 0.8000760167236792, 0.11022424933485367, 0.10832383124287344, 0.10718358038768529, 0.10300266058532877, 0.10300266058532877, 0.10148232611174458, 0.09958190801976435, 0.09920182440136831, 0.09882174078297225, 0.0984416571645762, 0.09806157354618016, 0.09730140630938806, 0.09654123907259597, 0.09616115545419993, 0.09540098821740783, 0.09540098821740783, 0.09540098821740783, 0.09540098821740783, 0.09540098821740783, 0.09540098821740783, 0.09578107183580388, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CUE.gap.json b/pfam_gap_rates/CUE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..049ee6d7f88b255783505b95e6122875edbabca8
--- /dev/null
+++ b/pfam_gap_rates/CUE.gap.json
@@ -0,0 +1 @@
+{"family": "CUE", "n_seqs": 1227, "length": 42, "gap_rates": [0.8541157294213529, 0.5533822330888346, 0.34474327628361856, 0.22493887530562348, 0.1532192339038305, 0.08801955990220049, 0.06356968215158924, 0.020374898125509373, 0.017929910350448247, 0.010594947025264874, 0.004074979625101874, 0.0024449877750611247, 0.0016299918500407497, 0.0008149959250203749, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.16462917685411574, 0.0, 0.0008149959250203749, 0.0024449877750611247, 0.019559902200488997, 0.0024449877750611247, 0.004074979625101874, 0.007334963325183374, 0.004889975550122249, 0.004889975550122249, 0.008964955175224124, 0.014669926650366748, 0.021189894050529748, 0.03504482477587612, 0.06030969845150774, 0.1198044009779951, 0.22982885085574573, 0.6177669111654441], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CW_binding_1.gap.json b/pfam_gap_rates/CW_binding_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b47bdeaf01b995fa9b09632313f75f06a64cd90e
--- /dev/null
+++ b/pfam_gap_rates/CW_binding_1.gap.json
@@ -0,0 +1 @@
+{"family": "CW_binding_1", "n_seqs": 4497, "length": 20, "gap_rates": [0.4007115855014454, 0.14365132310429174, 0.09384033800311319, 0.0644874360684901, 0.04158327774071603, 0.02579497442739604, 0.016900155659328443, 0.008005336891260841, 0.00333555703802535, 0.00133422281521014, 0.0, 0.00066711140760507, 0.00533689126084056, 0.9286190793862575, 0.022014676450967312, 0.06582165888370024, 0.10540360240160107, 0.14765399154992218, 0.2072492772959751, 0.349344007115855], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CaMBD.gap.json b/pfam_gap_rates/CaMBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7375cb454e1e6bfc1ac94865f4f2a85245f81577
--- /dev/null
+++ b/pfam_gap_rates/CaMBD.gap.json
@@ -0,0 +1 @@
+{"family": "CaMBD", "n_seqs": 167, "length": 75, "gap_rates": [0.16167664670658682, 0.12574850299401197, 0.10179640718562874, 0.08982035928143713, 0.08383233532934131, 0.07784431137724551, 0.0718562874251497, 0.04790419161676647, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.03592814371257485, 0.03592814371257485, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.03592814371257485, 0.03592814371257485, 0.10778443113772455, 0.1317365269461078, 0.16766467065868262, 0.0718562874251497, 0.041916167664670656, 0.03592814371257485, 0.041916167664670656, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.03592814371257485, 0.041916167664670656, 0.041916167664670656, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.059880239520958084, 0.08982035928143713, 0.09580838323353294, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.10179640718562874, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.12574850299401197, 0.1377245508982036, 0.1437125748502994, 0.15568862275449102, 0.16167664670658682, 0.16167664670658682, 0.2634730538922156, 0.41317365269461076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cactin_mid.gap.json b/pfam_gap_rates/Cactin_mid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e73ce700c08e6665ede99cc034ac1c6abc9e93e9
--- /dev/null
+++ b/pfam_gap_rates/Cactin_mid.gap.json
@@ -0,0 +1 @@
+{"family": "Cactin_mid", "n_seqs": 322, "length": 228, "gap_rates": [0.39751552795031053, 0.32919254658385094, 0.2111801242236025, 0.17701863354037267, 0.14906832298136646, 0.14596273291925466, 0.13975155279503104, 0.13664596273291926, 0.13043478260869565, 0.13043478260869565, 0.12732919254658384, 0.12422360248447205, 0.11801242236024845, 0.11180124223602485, 0.11180124223602485, 0.11180124223602485, 0.10559006211180125, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10248447204968944, 0.10248447204968944, 0.09937888198757763, 0.10248447204968944, 0.09937888198757763, 0.09937888198757763, 0.09627329192546584, 0.09627329192546584, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.09006211180124224, 0.08695652173913043, 0.08695652173913043, 0.09006211180124224, 0.08695652173913043, 0.08695652173913043, 0.08385093167701864, 0.08385093167701864, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09937888198757763, 0.09006211180124224, 0.11180124223602485, 0.11180124223602485, 0.2888198757763975, 0.30124223602484473, 0.2795031055900621, 0.2732919254658385, 0.2732919254658385, 0.32919254658385094, 0.32608695652173914, 0.36024844720496896, 0.4503105590062112, 0.3944099378881988, 0.5652173913043478, 0.782608695652174, 0.84472049689441, 0.8944099378881988, 0.9130434782608695, 0.9285714285714286, 0.937888198757764, 0.9440993788819876, 0.9472049689440993, 0.9440993788819876, 0.9285714285714286, 0.9161490683229814, 0.9037267080745341, 0.8695652173913043, 0.8291925465838509, 0.5900621118012422, 0.5496894409937888, 0.2888198757763975, 0.18322981366459629, 0.13043478260869565, 0.11801242236024845, 0.11180124223602485, 0.09627329192546584, 0.09627329192546584, 0.10248447204968944, 0.09937888198757763, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09006211180124224, 0.09316770186335403, 0.09627329192546584, 0.09627329192546584, 0.09627329192546584, 0.09937888198757763, 0.09627329192546584, 0.09316770186335403, 0.08385093167701864, 0.08385093167701864, 0.08074534161490683, 0.08385093167701864, 0.08385093167701864, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.07763975155279502, 0.08695652173913043, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.08695652173913043, 0.09937888198757763, 0.10559006211180125, 0.38198757763975155, 0.9409937888198758, 0.8012422360248447, 0.14285714285714285, 0.10869565217391304, 0.10248447204968944, 0.09006211180124224, 0.09006211180124224, 0.09316770186335403, 0.09316770186335403, 0.08695652173913043, 0.08695652173913043, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08695652173913043, 0.07763975155279502, 0.07763975155279502, 0.07763975155279502, 0.07763975155279502, 0.07763975155279502, 0.08074534161490683, 0.08074534161490683, 0.16770186335403728, 0.22981366459627328, 0.3167701863354037, 0.4161490683229814, 0.484472049689441, 0.5217391304347826, 0.5652173913043478, 0.7919254658385093, 0.8105590062111802, 0.8291925465838509, 0.8633540372670807, 0.9347826086956522, 0.8726708074534162, 0.8291925465838509, 0.8229813664596274, 0.8012422360248447, 0.7857142857142857, 0.5900621118012422, 0.6366459627329193, 0.5838509316770186, 0.5962732919254659, 0.3105590062111801, 0.18944099378881987, 0.16149068322981366, 0.14906832298136646, 0.12732919254658384, 0.11490683229813664, 0.10248447204968944, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08385093167701864, 0.07763975155279502, 0.09006211180124224, 0.09627329192546584, 0.09627329192546584, 0.09937888198757763, 0.09627329192546584, 0.09627329192546584, 0.09627329192546584, 0.09627329192546584, 0.09627329192546584, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.937888198757764, 0.9130434782608695, 0.12422360248447205, 0.11801242236024845, 0.10869565217391304, 0.782608695652174, 0.10869565217391304, 0.10559006211180125, 0.10248447204968944, 0.10248447204968944, 0.10248447204968944, 0.10248447204968944, 0.10248447204968944, 0.10559006211180125, 0.10559006211180125, 0.10559006211180125, 0.10559006211180125, 0.10248447204968944, 0.10248447204968944, 0.10559006211180125, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.11180124223602485, 0.11180124223602485, 0.11801242236024845, 0.11801242236024845, 0.12422360248447205, 0.14285714285714285, 0.16149068322981366, 0.2422360248447205, 0.4658385093167702], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CagX.gap.json b/pfam_gap_rates/CagX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..164edc080433c787123e61b1ebac74a608600e7d
--- /dev/null
+++ b/pfam_gap_rates/CagX.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Calcipressin.gap.json b/pfam_gap_rates/Calcipressin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a37ef2e6e127f3b79aed5c058805ce276bcb57c9
--- /dev/null
+++ b/pfam_gap_rates/Calcipressin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CamS.gap.json b/pfam_gap_rates/CamS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..808f224f3a3cd711dd4f78f55da459244340bc42
--- /dev/null
+++ b/pfam_gap_rates/CamS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Caps_synth_CapC.gap.json b/pfam_gap_rates/Caps_synth_CapC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5e22c1feabbed6f16ea2db14c6ddbc121ce1848
--- /dev/null
+++ b/pfam_gap_rates/Caps_synth_CapC.gap.json
@@ -0,0 +1 @@
+{"family": "Caps_synth_CapC", "n_seqs": 120, "length": 142, "gap_rates": [0.225, 0.10833333333333334, 0.075, 0.058333333333333334, 0.05, 0.05, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.025, 0.025, 0.025, 0.03333333333333333, 0.025, 0.025, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.025, 0.675, 0.025, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.7083333333333334, 0.008333333333333333, 0.016666666666666666, 0.03333333333333333, 0.016666666666666666, 0.016666666666666666, 0.025, 0.9, 0.9, 0.925, 0.925, 0.9, 0.9, 0.9, 0.03333333333333333, 0.016666666666666666, 0.025, 0.025, 0.03333333333333333, 0.03333333333333333, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.025, 0.03333333333333333, 0.03333333333333333, 0.3, 0.15833333333333333, 0.10833333333333334, 0.13333333333333333, 0.14166666666666666, 0.15833333333333333, 0.39166666666666666, 0.5583333333333333, 0.8333333333333334, 0.875, 0.9, 0.9083333333333333, 0.925, 0.9083333333333333, 0.9, 0.8833333333333333, 0.8666666666666667, 0.7666666666666667, 0.075, 0.041666666666666664, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.05, 0.06666666666666667, 0.16666666666666666, 0.25833333333333336, 0.625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Catalase-rel.gap.json b/pfam_gap_rates/Catalase-rel.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55a3285d2a5c6d252bbe17927495221f628ee43b
--- /dev/null
+++ b/pfam_gap_rates/Catalase-rel.gap.json
@@ -0,0 +1 @@
+{"family": "Catalase-rel", "n_seqs": 1721, "length": 68, "gap_rates": [0.9203951191167926, 0.6618245206275422, 0.42591516560139453, 0.3527019174898315, 0.1063335270191749, 0.073794305636258, 0.020918070889018012, 0.015107495642068565, 0.011621150493898896, 0.011621150493898896, 0.009296920395119116, 0.008715862870424172, 0.007553747821034283, 0.005810575246949448, 0.005810575246949448, 0.005229517722254503, 0.7344567112144103, 0.004067402672864613, 0.003486345148169669, 0.002905287623474724, 0.002905287623474724, 0.002905287623474724, 0.002905287623474724, 0.0017431725740848344, 0.0017431725740848344, 0.0005810575246949448, 0.0005810575246949448, 0.0005810575246949448, 0.0005810575246949448, 0.0005810575246949448, 0.0011621150493898896, 0.0011621150493898896, 0.0011621150493898896, 0.0011621150493898896, 0.0011621150493898896, 0.9453805926786751, 0.9145845438698431, 0.0005810575246949448, 0.0005810575246949448, 0.0011621150493898896, 0.002905287623474724, 0.5183033120278907, 0.002324230098779779, 0.002324230098779779, 0.002324230098779779, 0.002324230098779779, 0.003486345148169669, 0.003486345148169669, 0.003486345148169669, 0.003486345148169669, 0.004067402672864613, 0.004067402672864613, 0.002905287623474724, 0.002905287623474724, 0.002905287623474724, 0.004067402672864613, 0.005229517722254503, 0.005810575246949448, 0.007553747821034283, 0.007553747821034283, 0.009296920395119116, 0.011621150493898896, 0.012783265543288786, 0.01336432306798373, 0.017431725740848343, 0.039511911679256245, 0.1336432306798373, 0.4073213248111563], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CbiM.gap.json b/pfam_gap_rates/CbiM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29cb7b5f74ab2035f92386c2a4a81df531854d45
--- /dev/null
+++ b/pfam_gap_rates/CbiM.gap.json
@@ -0,0 +1 @@
+{"family": "CbiM", "n_seqs": 853, "length": 227, "gap_rates": [0.12895662368112543, 0.11019929660023446, 0.10668229777256741, 0.10316529894490035, 0.0984759671746776, 0.09495896834701055, 0.08206330597889801, 0.07737397420867527, 0.07620164126611957, 0.07268464243845252, 0.06799531066822978, 0.06213364595545135, 0.05509964830011723, 0.05041031652989449, 0.04572098475967175, 0.04337631887456037, 0.03985932004689332, 0.03751465416178194, 0.03634232121922626, 0.03634232121922626, 0.03634232121922626, 0.03634232121922626, 0.03634232121922626, 0.03634232121922626, 0.03634232121922626, 0.03634232121922626, 0.03634232121922626, 0.035169988276670575, 0.03399765533411489, 0.03399765533411489, 0.03399765533411489, 0.035169988276670575, 0.03634232121922626, 0.21219226260257915, 0.1817116060961313, 0.895662368112544, 0.16647127784290738, 0.15826494724501758, 0.03048065650644783, 0.6858147713950762, 0.6271981242672919, 0.035169988276670575, 0.029308323563892145, 0.02813599062133646, 0.0246189917936694, 0.023446658851113716, 0.022274325908558032, 0.9449003516998827, 0.021101992966002344, 0.01992966002344666, 0.01992966002344666, 0.01992966002344666, 0.01992966002344666, 0.01875732708089097, 0.01875732708089097, 0.01875732708089097, 0.01875732708089097, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.20398593200468934, 0.7971864009378663, 0.031652989449003514, 0.026963657678780773, 0.022274325908558032, 0.021101992966002344, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.016412661195779603, 0.015240328253223915, 0.015240328253223915, 0.01406799531066823, 0.01406799531066823, 0.015240328253223915, 0.21570926143024619, 0.017584994138335287, 0.021101992966002344, 0.016412661195779603, 0.015240328253223915, 0.015240328253223915, 0.015240328253223915, 0.016412661195779603, 0.016412661195779603, 0.017584994138335287, 0.017584994138335287, 0.016412661195779603, 0.01875732708089097, 0.017584994138335287, 0.016412661195779603, 0.01875732708089097, 0.015240328253223915, 0.08440797186400938, 0.017584994138335287, 0.017584994138335287, 0.015240328253223915, 0.016412661195779603, 0.01406799531066823, 0.01406799531066823, 0.01406799531066823, 0.01406799531066823, 0.012895662368112544, 0.012895662368112544, 0.01406799531066823, 0.012895662368112544, 0.012895662368112544, 0.011723329425556858, 0.01875732708089097, 0.012895662368112544, 0.012895662368112544, 0.010550996483001172, 0.010550996483001172, 0.010550996483001172, 0.012895662368112544, 0.011723329425556858, 0.011723329425556858, 0.010550996483001172, 0.012895662368112544, 0.8933177022274326, 0.05041031652989449, 0.012895662368112544, 0.012895662368112544, 0.011723329425556858, 0.10785463071512309, 0.023446658851113716, 0.16178194607268465, 0.12895662368112543, 0.16764361078546308, 0.5697538100820633, 0.8980070339976554, 0.7866354044548651, 0.5638921453692849, 0.34114888628370454, 0.10550996483001172, 0.03048065650644783, 0.01992966002344666, 0.016412661195779603, 0.015240328253223915, 0.015240328253223915, 0.015240328253223915, 0.015240328253223915, 0.01406799531066823, 0.015240328253223915, 0.04337631887456037, 0.01875732708089097, 0.015240328253223915, 0.015240328253223915, 0.01406799531066823, 0.01406799531066823, 0.01406799531066823, 0.01406799531066823, 0.015240328253223915, 0.01406799531066823, 0.01406799531066823, 0.01406799531066823, 0.01406799531066823, 0.01406799531066823, 0.01406799531066823, 0.015240328253223915, 0.01406799531066823, 0.01406799531066823, 0.01406799531066823, 0.016412661195779603, 0.8300117233294255, 0.029308323563892145, 0.032825322391559206, 0.23563892145369286, 0.451348182883939, 0.31535756154747946, 0.6060961313012896, 0.6916764361078547, 0.8980070339976554, 0.9073856975381008, 0.9144196951934349, 0.9097303634232122, 0.9073856975381008, 0.8675263774912075, 0.634232121922626, 0.5920281359906213, 0.2532239155920281, 0.12778429073856976, 0.023446658851113716, 0.021101992966002344, 0.021101992966002344, 0.022274325908558032, 0.021101992966002344, 0.022274325908558032, 0.022274325908558032, 0.023446658851113716, 0.026963657678780773, 0.022274325908558032, 0.022274325908558032, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.9097303634232122, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.021101992966002344, 0.022274325908558032, 0.023446658851113716, 0.02813599062133646, 0.03634232121922626, 0.04689331770222743, 0.07737397420867527, 0.13481828839390386, 0.2250879249706917, 0.3083235638921454, 0.38569753810082064, 0.5357561547479485], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CcmF_C.gap.json b/pfam_gap_rates/CcmF_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..062a2002907d1cf2d348c9ecff5ec7e6aa55c272
--- /dev/null
+++ b/pfam_gap_rates/CcmF_C.gap.json
@@ -0,0 +1 @@
+{"family": "CcmF_C", "n_seqs": 682, "length": 342, "gap_rates": [0.2785923753665689, 0.23607038123167157, 0.19648093841642228, 0.17595307917888564, 0.1598240469208211, 0.15102639296187684, 0.14222873900293256, 0.1378299120234604, 0.13343108504398826, 0.1348973607038123, 0.13343108504398826, 0.12903225806451613, 0.12756598240469208, 0.12463343108504399, 0.12903225806451613, 0.12756598240469208, 0.12463343108504399, 0.12023460410557185, 0.11730205278592376, 0.12023460410557185, 0.1187683284457478, 0.1158357771260997, 0.11290322580645161, 0.11143695014662756, 0.10410557184750734, 0.10703812316715543, 0.10117302052785923, 0.9296187683284457, 0.08944281524926687, 0.08357771260997067, 0.08211143695014662, 0.07917888563049853, 0.07771260997067449, 0.07771260997067449, 0.07771260997067449, 0.07771260997067449, 0.07771260997067449, 0.0747800586510264, 0.0747800586510264, 0.07624633431085044, 0.07624633431085044, 0.07771260997067449, 0.0747800586510264, 0.07331378299120235, 0.07331378299120235, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CdAMP_rec.gap.json b/pfam_gap_rates/CdAMP_rec.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f9a67e43e26f4d9437474a295c616dcdebc1ed7
--- /dev/null
+++ b/pfam_gap_rates/CdAMP_rec.gap.json
@@ -0,0 +1 @@
+{"family": "CdAMP_rec", "n_seqs": 411, "length": 109, "gap_rates": [0.06326034063260341, 0.0340632603406326, 0.021897810218978103, 0.021897810218978103, 0.019464720194647202, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.0072992700729927005, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.0024330900243309003, 0.0024330900243309003, 0.0024330900243309003, 0.0024330900243309003, 0.004866180048661801, 0.0072992700729927005, 0.012165450121654502, 0.014598540145985401, 0.014598540145985401, 0.0267639902676399, 0.038929440389294405, 0.05596107055961071, 0.0827250608272506, 0.072992700729927, 0.08759124087591241, 0.07542579075425791, 0.07542579075425791, 0.0948905109489051, 0.10462287104622871, 0.11192214111922141, 0.1435523114355231, 0.12652068126520682, 0.12165450121654502, 0.11435523114355231, 0.0851581508515815, 0.09245742092457421, 0.0948905109489051, 0.12652068126520682, 0.11678832116788321, 0.09002433090024331, 0.0827250608272506, 0.0827250608272506, 0.0827250608272506, 0.0827250608272506, 0.0827250608272506, 0.0827250608272506, 0.08029197080291971, 0.08029197080291971, 0.08029197080291971, 0.08029197080291971, 0.0827250608272506, 0.08029197080291971, 0.08029197080291971, 0.0827250608272506, 0.0827250608272506, 0.0827250608272506, 0.0827250608272506, 0.0827250608272506, 0.09002433090024331, 0.0948905109489051, 0.09732360097323602, 0.10948905109489052, 0.35036496350364965], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chalcone_2.gap.json b/pfam_gap_rates/Chalcone_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77cebf1d3b2ad96a73213828064e307dea949ff8
--- /dev/null
+++ b/pfam_gap_rates/Chalcone_2.gap.json
@@ -0,0 +1 @@
+{"family": "Chalcone_2", "n_seqs": 224, "length": 229, "gap_rates": [0.7455357142857143, 0.5044642857142857, 0.40625, 0.23214285714285715, 0.19196428571428573, 0.19196428571428573, 0.17857142857142858, 0.17410714285714285, 0.17410714285714285, 0.16964285714285715, 0.16964285714285715, 0.16517857142857142, 0.16517857142857142, 0.16517857142857142, 0.16517857142857142, 0.16964285714285715, 0.17410714285714285, 0.78125, 0.78125, 0.78125, 0.16071428571428573, 0.15625, 0.15178571428571427, 0.15178571428571427, 0.15178571428571427, 0.15178571428571427, 0.15178571428571427, 0.15625, 0.15625, 0.15625, 0.15178571428571427, 0.16071428571428573, 0.1875, 0.21428571428571427, 0.21875, 0.22321428571428573, 0.23214285714285715, 0.23660714285714285, 0.4732142857142857, 0.48660714285714285, 0.4955357142857143, 0.26785714285714285, 0.27232142857142855, 0.29464285714285715, 0.32142857142857145, 0.6741071428571429, 0.65625, 0.6473214285714286, 0.45089285714285715, 0.48660714285714285, 0.5044642857142857, 0.6339285714285714, 0.625, 0.5982142857142857, 0.5982142857142857, 0.5625, 0.5401785714285714, 0.5178571428571429, 0.4955357142857143, 0.4732142857142857, 0.45982142857142855, 0.35714285714285715, 0.3392857142857143, 0.33035714285714285, 0.3482142857142857, 0.3794642857142857, 0.3794642857142857, 0.3794642857142857, 0.38839285714285715, 0.5, 0.5, 0.45535714285714285, 0.3794642857142857, 0.3125, 0.29464285714285715, 0.29017857142857145, 0.23214285714285715, 0.21875, 0.20089285714285715, 0.19196428571428573, 0.19196428571428573, 0.20535714285714285, 0.9375, 0.20535714285714285, 0.18303571428571427, 0.84375, 0.17857142857142858, 0.14732142857142858, 0.14732142857142858, 0.14732142857142858, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.7857142857142857, 0.14285714285714285, 0.14285714285714285, 0.13839285714285715, 0.13839285714285715, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.12946428571428573, 0.12946428571428573, 0.12946428571428573, 0.12946428571428573, 0.12946428571428573, 0.12946428571428573, 0.13392857142857142, 0.13392857142857142, 0.13839285714285715, 0.13392857142857142, 0.5401785714285714, 0.6919642857142857, 0.7053571428571429, 0.8705357142857143, 0.90625, 0.9285714285714286, 0.9375, 0.9151785714285714, 0.8794642857142857, 0.7232142857142857, 0.6964285714285714, 0.6517857142857143, 0.49107142857142855, 0.4642857142857143, 0.375, 0.17857142857142858, 0.16071428571428573, 0.15625, 0.14732142857142858, 0.15178571428571427, 0.12946428571428573, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.9375, 0.8794642857142857, 0.125, 0.12946428571428573, 0.5178571428571429, 0.13839285714285715, 0.13392857142857142, 0.12946428571428573, 0.13392857142857142, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.17410714285714285, 0.15625, 0.16071428571428573, 0.20089285714285715, 0.20089285714285715, 0.21428571428571427, 0.19642857142857142, 0.18303571428571427, 0.17410714285714285, 0.16071428571428573, 0.15625, 0.15625, 0.42410714285714285, 0.48660714285714285, 0.49107142857142855, 0.8258928571428571, 0.875, 0.9419642857142857, 0.9017857142857143, 0.84375, 0.7901785714285714, 0.5714285714285714, 0.5267857142857143, 0.5044642857142857, 0.23660714285714285, 0.16964285714285715, 0.16517857142857142, 0.16071428571428573, 0.14732142857142858, 0.14732142857142858, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14732142857142858, 0.14732142857142858, 0.14732142857142858, 0.14732142857142858, 0.42410714285714285, 0.14732142857142858, 0.22767857142857142, 0.16964285714285715, 0.16071428571428573, 0.17857142857142858, 0.16517857142857142, 0.16517857142857142, 0.16964285714285715, 0.16517857142857142, 0.16964285714285715, 0.17410714285714285, 0.19196428571428573, 0.24553571428571427, 0.5401785714285714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chlor_dismutase.gap.json b/pfam_gap_rates/Chlor_dismutase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a680d983bda2023c752bba8ffd9df004745637bb
--- /dev/null
+++ b/pfam_gap_rates/Chlor_dismutase.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/CitF.gap.json b/pfam_gap_rates/CitF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9959d3079f8820f0992b38e827f4dd4e233176ce
--- /dev/null
+++ b/pfam_gap_rates/CitF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Clathrin_lg_ch.gap.json b/pfam_gap_rates/Clathrin_lg_ch.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0841d7e0e84abff6e1a9f2bb672d228d9149cd03
--- /dev/null
+++ b/pfam_gap_rates/Clathrin_lg_ch.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Clc-like.gap.json b/pfam_gap_rates/Clc-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb90a3be548ff39a12b4c3a601e3ed007287f3aa
--- /dev/null
+++ b/pfam_gap_rates/Clc-like.gap.json
@@ -0,0 +1 @@
+{"family": "Clc-like", "n_seqs": 180, "length": 233, "gap_rates": [0.7944444444444444, 0.5888888888888889, 0.4388888888888889, 0.42777777777777776, 0.37777777777777777, 0.3277777777777778, 0.3, 0.2833333333333333, 0.26666666666666666, 0.25, 0.25, 0.25, 0.25, 0.24444444444444444, 0.2388888888888889, 0.23333333333333334, 0.23333333333333334, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.21666666666666667, 0.21666666666666667, 0.2111111111111111, 0.21666666666666667, 0.2, 0.2111111111111111, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.19444444444444445, 0.18888888888888888, 0.2, 0.21666666666666667, 0.21666666666666667, 0.21666666666666667, 0.2222222222222222, 0.21666666666666667, 0.21666666666666667, 0.2111111111111111, 0.3111111111111111, 0.3111111111111111, 0.3055555555555556, 0.31666666666666665, 0.7555555555555555, 0.85, 0.9, 0.9, 0.9055555555555556, 0.9055555555555556, 0.9, 0.8555555555555555, 0.7833333333333333, 0.7388888888888889, 0.4888888888888889, 0.49444444444444446, 0.5111111111111111, 0.5111111111111111, 0.4777777777777778, 0.45, 0.45, 0.9111111111111111, 0.6833333333333333, 0.45, 0.4444444444444444, 0.4444444444444444, 0.3277777777777778, 0.20555555555555555, 0.20555555555555555, 0.20555555555555555, 0.20555555555555555, 0.20555555555555555, 0.20555555555555555, 0.20555555555555555, 0.21666666666666667, 0.21666666666666667, 0.3277777777777778, 0.9, 0.9, 0.2222222222222222, 0.21666666666666667, 0.4111111111111111, 0.4166666666666667, 0.3888888888888889, 0.22777777777777777, 0.2388888888888889, 0.48333333333333334, 0.48333333333333334, 0.4722222222222222, 0.38333333333333336, 0.38333333333333336, 0.36666666666666664, 0.37222222222222223, 0.9, 0.9, 0.9, 0.8833333333333333, 0.34444444444444444, 0.2222222222222222, 0.20555555555555555, 0.2, 0.18888888888888888, 0.18888888888888888, 0.18333333333333332, 0.18888888888888888, 0.19444444444444445, 0.18888888888888888, 0.17222222222222222, 0.17222222222222222, 0.16666666666666666, 0.17777777777777778, 0.18333333333333332, 0.2, 0.17777777777777778, 0.19444444444444445, 0.17777777777777778, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.17777777777777778, 0.18333333333333332, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18333333333333332, 0.18333333333333332, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.26666666666666666, 0.2, 0.2, 0.2111111111111111, 0.2111111111111111, 0.2, 0.2, 0.19444444444444445, 0.18888888888888888, 0.18888888888888888, 0.19444444444444445, 0.8777777777777778, 0.8944444444444445, 0.8777777777777778, 0.8611111111111112, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.18888888888888888, 0.19444444444444445, 0.17777777777777778, 0.19444444444444445, 0.19444444444444445, 0.2, 0.2, 0.2, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.18888888888888888, 0.19444444444444445, 0.19444444444444445, 0.2, 0.2111111111111111, 0.2111111111111111, 0.2222222222222222, 0.2111111111111111, 0.2111111111111111, 0.2111111111111111, 0.21666666666666667, 0.21666666666666667, 0.8388888888888889, 0.21666666666666667, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2388888888888889, 0.24444444444444444, 0.25, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.25555555555555554, 0.26666666666666666, 0.26666666666666666, 0.2722222222222222, 0.2722222222222222, 0.2722222222222222, 0.2722222222222222, 0.2777777777777778, 0.28888888888888886, 0.31666666666666665, 0.32222222222222224, 0.45555555555555555, 0.4111111111111111, 0.45555555555555555, 0.5055555555555555, 0.7111111111111111, 0.9166666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cmc1.gap.json b/pfam_gap_rates/Cmc1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..488f7abcedb0fb78c885f50344169cf1ce3a4320
--- /dev/null
+++ b/pfam_gap_rates/Cmc1.gap.json
@@ -0,0 +1 @@
+{"family": "Cmc1", "n_seqs": 465, "length": 71, "gap_rates": [0.3978494623655914, 0.2989247311827957, 0.23870967741935484, 0.2129032258064516, 0.17204301075268819, 0.16559139784946236, 0.15053763440860216, 0.12473118279569892, 0.1010752688172043, 0.09247311827956989, 0.7978494623655914, 0.08172043010752689, 0.07311827956989247, 0.06236559139784946, 0.06236559139784946, 0.053763440860215055, 0.05161290322580645, 0.047311827956989246, 0.03655913978494624, 0.01935483870967742, 0.017204301075268817, 0.010752688172043012, 0.008602150537634409, 0.008602150537634409, 0.008602150537634409, 0.0064516129032258064, 0.023655913978494623, 0.5225806451612903, 0.008602150537634409, 0.002150537634408602, 0.0, 0.004301075268817204, 0.004301075268817204, 0.0, 0.002150537634408602, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002150537634408602, 0.002150537634408602, 0.004301075268817204, 0.004301075268817204, 0.0064516129032258064, 0.012903225806451613, 0.01935483870967742, 0.03655913978494624, 0.05806451612903226, 0.06666666666666667, 0.06666666666666667, 0.07956989247311828, 0.09247311827956989, 0.0989247311827957, 0.4258064516129032, 0.15268817204301074, 0.15053763440860216, 0.15483870967741936, 0.16559139784946236, 0.17204301075268819, 0.1870967741935484, 0.1978494623655914, 0.21505376344086022, 0.24946236559139784, 0.2903225806451613, 0.35268817204301073, 0.4774193548387097, 0.7096774193548387], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cnd1_N.gap.json b/pfam_gap_rates/Cnd1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08146c53dbf480235d90de5ebe73b7d323ee45b4
--- /dev/null
+++ b/pfam_gap_rates/Cnd1_N.gap.json
@@ -0,0 +1 @@
+{"family": "Cnd1_N", "n_seqs": 278, "length": 200, "gap_rates": [0.9172661870503597, 0.4712230215827338, 0.29136690647482016, 0.24100719424460432, 0.22302158273381295, 0.21223021582733814, 0.18345323741007194, 0.17625899280575538, 0.17266187050359713, 0.16546762589928057, 0.14388489208633093, 0.14028776978417265, 0.14028776978417265, 0.1366906474820144, 0.12949640287769784, 0.12589928057553956, 0.1223021582733813, 0.11870503597122302, 0.11870503597122302, 0.11870503597122302, 0.11870503597122302, 0.11870503597122302, 0.11151079136690648, 0.11510791366906475, 0.11870503597122302, 0.1079136690647482, 0.10431654676258993, 0.8848920863309353, 0.920863309352518, 0.9388489208633094, 0.9460431654676259, 0.935251798561151, 0.920863309352518, 0.8812949640287769, 0.43884892086330934, 0.89568345323741, 0.26618705035971224, 0.11510791366906475, 0.7122302158273381, 0.8453237410071942, 0.9136690647482014, 0.935251798561151, 0.8884892086330936, 0.802158273381295, 0.6402877697841727, 0.19424460431654678, 0.0683453237410072, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06115107913669065, 0.05755395683453238, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.050359712230215826, 0.050359712230215826, 0.12949640287769784, 0.1618705035971223, 0.22661870503597123, 0.27697841726618705, 0.4892086330935252, 0.7733812949640287, 0.8489208633093526, 0.920863309352518, 0.9496402877697842, 0.9460431654676259, 0.8741007194244604, 0.8237410071942446, 0.7050359712230215, 0.11510791366906475, 0.1079136690647482, 0.09352517985611511, 0.08633093525179857, 0.1079136690647482, 0.08273381294964029, 0.737410071942446, 0.8345323741007195, 0.9424460431654677, 0.9496402877697842, 0.9100719424460432, 0.7877697841726619, 0.6294964028776978, 0.4892086330935252, 0.33093525179856115, 0.1906474820143885, 0.15827338129496402, 0.11510791366906475, 0.09352517985611511, 0.03237410071942446, 0.02877697841726619, 0.02877697841726619, 0.039568345323741004, 0.03597122302158273, 0.8920863309352518, 0.10431654676258993, 0.08273381294964029, 0.03237410071942446, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.02158273381294964, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.9496402877697842, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.02158273381294964, 0.025179856115107913, 0.02158273381294964, 0.017985611510791366, 0.025179856115107913, 0.02877697841726619, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.02877697841726619, 0.02877697841726619, 0.02877697841726619, 0.02877697841726619, 0.02877697841726619, 0.02877697841726619, 0.02877697841726619, 0.046762589928057555, 0.06115107913669065, 0.046762589928057555, 0.046762589928057555, 0.050359712230215826, 0.9028776978417267, 0.8992805755395683, 0.05755395683453238, 0.05755395683453238, 0.05755395683453238, 0.06474820143884892, 0.07194244604316546, 0.07553956834532374, 0.07553956834532374, 0.07553956834532374, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.08273381294964029, 0.08273381294964029, 0.08273381294964029, 0.08992805755395683, 0.09352517985611511, 0.09712230215827339, 0.11870503597122302, 0.1223021582733813, 0.12589928057553956, 0.12589928057553956, 0.14388489208633093, 0.1474820143884892, 0.15467625899280577, 0.19424460431654678, 0.2517985611510791, 0.5503597122302158], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cohesin_HEAT.gap.json b/pfam_gap_rates/Cohesin_HEAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e218fdad57a5ecc64ba827bc08904265bec2bd7
--- /dev/null
+++ b/pfam_gap_rates/Cohesin_HEAT.gap.json
@@ -0,0 +1 @@
+{"family": "Cohesin_HEAT", "n_seqs": 398, "length": 43, "gap_rates": [0.4221105527638191, 0.3944723618090452, 0.3869346733668342, 0.37185929648241206, 0.35678391959798994, 0.3391959798994975, 0.3341708542713568, 0.32663316582914576, 0.32160804020100503, 0.31155778894472363, 0.31155778894472363, 0.3065326633165829, 0.2964824120603015, 0.2864321608040201, 0.271356783919598, 0.2537688442211055, 0.20603015075376885, 0.821608040201005, 0.1306532663316583, 0.11055276381909548, 0.09547738693467336, 0.08542713567839195, 0.06281407035175879, 0.05778894472361809, 0.017587939698492462, 0.002512562814070352, 0.017587939698492462, 0.002512562814070352, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007537688442211055, 0.020100502512562814, 0.022613065326633167, 0.06532663316582915, 0.09296482412060302, 0.14824120603015076, 0.20854271356783918], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ComP_DUS.gap.json b/pfam_gap_rates/ComP_DUS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b50118953a6ce1d70e855953f5a6433d54d6e15
--- /dev/null
+++ b/pfam_gap_rates/ComP_DUS.gap.json
@@ -0,0 +1 @@
+{"family": "ComP_DUS", "n_seqs": 368, "length": 113, "gap_rates": [0.07608695652173914, 0.04076086956521739, 0.03260869565217391, 0.03260869565217391, 0.024456521739130436, 0.021739130434782608, 0.010869565217391304, 0.010869565217391304, 0.008152173913043478, 0.008152173913043478, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.010869565217391304, 0.010869565217391304, 0.0, 0.002717391304347826, 0.008152173913043478, 0.010869565217391304, 0.5652173913043478, 0.6413043478260869, 0.7445652173913043, 0.7961956521739131, 0.8722826086956522, 0.9266304347826086, 0.9483695652173914, 0.8994565217391305, 0.842391304347826, 0.7771739130434783, 0.7065217391304348, 0.6086956521739131, 0.48097826086956524, 0.41304347826086957, 0.3233695652173913, 0.20108695652173914, 0.12771739130434784, 0.08967391304347826, 0.0625, 0.04076086956521739, 0.02717391304347826, 0.021739130434782608, 0.01358695652173913, 0.005434782608695652, 0.005434782608695652, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.008152173913043478, 0.008152173913043478, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.008152173913043478, 0.6711956521739131, 0.8206521739130435, 0.907608695652174, 0.7717391304347826, 0.5163043478260869, 0.125, 0.029891304347826088, 0.021739130434782608, 0.021739130434782608, 0.024456521739130436, 0.024456521739130436, 0.008152173913043478, 0.9483695652173914, 0.9456521739130435, 0.010869565217391304, 0.01358695652173913, 0.01358695652173913, 0.019021739130434784, 0.019021739130434784, 0.021739130434782608, 0.024456521739130436, 0.029891304347826088, 0.8668478260869565, 0.8614130434782609, 0.057065217391304345, 0.09239130434782608, 0.12771739130434784, 0.16304347826086957, 0.9429347826086957, 0.2826086956521739, 0.9347826086956522, 0.3070652173913043, 0.32608695652173914, 0.9239130434782609, 0.6413043478260869, 0.32065217391304346, 0.328804347826087, 0.36141304347826086, 0.3858695652173913, 0.6005434782608695], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Complex1_LYR_2.gap.json b/pfam_gap_rates/Complex1_LYR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..edf49b7ad547e72406a169b8e9e015e3b6c969ff
--- /dev/null
+++ b/pfam_gap_rates/Complex1_LYR_2.gap.json
@@ -0,0 +1 @@
+{"family": "Complex1_LYR_2", "n_seqs": 446, "length": 123, "gap_rates": [0.6367713004484304, 0.17713004484304934, 0.10089686098654709, 0.07174887892376682, 0.06278026905829596, 0.05829596412556054, 0.05605381165919283, 0.0515695067264574, 0.04932735426008968, 0.04708520179372197, 0.04484304932735426, 0.042600896860986545, 0.9439461883408071, 0.9260089686098655, 0.04484304932735426, 0.9349775784753364, 0.9439461883408071, 0.9461883408071748, 0.9484304932735426, 0.9461883408071748, 0.9439461883408071, 0.9372197309417041, 0.8408071748878924, 0.1726457399103139, 0.06278026905829596, 0.8654708520179372, 0.7466367713004485, 0.10089686098654709, 0.06053811659192825, 0.0515695067264574, 0.03811659192825112, 0.03139013452914798, 0.8318385650224215, 0.8587443946188341, 0.8901345291479821, 0.8789237668161435, 0.8430493273542601, 0.8228699551569507, 0.02466367713004484, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.01569506726457399, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.01569506726457399, 0.02242152466367713, 0.02242152466367713, 0.02466367713004484, 0.28699551569506726, 0.226457399103139, 0.679372197309417, 0.6973094170403588, 0.7242152466367713, 0.7376681614349776, 0.7914798206278026, 0.9192825112107623, 0.9417040358744395, 0.9484304932735426, 0.9349775784753364, 0.8609865470852018, 0.7713004484304933, 0.7331838565022422, 0.7062780269058296, 0.6905829596412556, 0.672645739910314, 0.01569506726457399, 0.020179372197309416, 0.01569506726457399, 0.6210762331838565, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.008968609865470852, 0.01569506726457399, 0.02242152466367713, 0.02466367713004484, 0.02914798206278027, 0.03587443946188341, 0.033632286995515695, 0.04708520179372197, 0.08520179372197309, 0.11210762331838565, 0.42376681614349776, 0.4147982062780269, 0.3632286995515695, 0.9103139013452914, 0.9394618834080718, 0.9484304932735426, 0.92152466367713, 0.899103139013453, 0.3811659192825112, 0.3609865470852018, 0.31614349775784756, 0.3251121076233184, 0.32062780269058294, 0.3430493273542601, 0.3542600896860987, 0.3632286995515695, 0.8385650224215246, 0.8228699551569507, 0.38565022421524664, 0.3968609865470852, 0.4103139013452915, 0.4282511210762332, 0.44170403587443946, 0.45067264573991034, 0.4618834080717489, 0.47533632286995514, 0.49327354260089684, 0.5224215246636771, 0.6681614349775785], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Connexin.gap.json b/pfam_gap_rates/Connexin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c6af013b5bc5ef3f7b6fbc17f8409fbe23f6634
--- /dev/null
+++ b/pfam_gap_rates/Connexin.gap.json
@@ -0,0 +1 @@
+{"family": "Connexin", "n_seqs": 490, "length": 262, "gap_rates": [0.2938775510204082, 0.22857142857142856, 0.21428571428571427, 0.18571428571428572, 0.17551020408163265, 0.17346938775510204, 0.17142857142857143, 0.1653061224489796, 0.16326530612244897, 0.16122448979591836, 0.15714285714285714, 0.15306122448979592, 0.1489795918367347, 0.14489795918367346, 0.14285714285714285, 0.13877551020408163, 0.1306122448979592, 0.12857142857142856, 0.12653061224489795, 0.12244897959183673, 0.11632653061224489, 0.11224489795918367, 0.10816326530612246, 0.1, 0.09795918367346938, 0.09387755102040816, 0.09591836734693877, 0.09183673469387756, 0.09183673469387756, 0.09795918367346938, 0.09183673469387756, 0.0836734693877551, 0.0836734693877551, 0.0836734693877551, 0.0836734693877551, 0.09183673469387756, 0.1, 0.08775510204081632, 0.08571428571428572, 0.0836734693877551, 0.08163265306122448, 0.08163265306122448, 0.07959183673469387, 0.07959183673469387, 0.07959183673469387, 0.0836734693877551, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Copper-bind.gap.json b/pfam_gap_rates/Copper-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65dbdb6419104c4c98bff1e59e27b70548613629
--- /dev/null
+++ b/pfam_gap_rates/Copper-bind.gap.json
@@ -0,0 +1 @@
+{"family": "Copper-bind", "n_seqs": 776, "length": 140, "gap_rates": [0.7229381443298969, 0.625, 0.5360824742268041, 0.4420103092783505, 0.36726804123711343, 0.30283505154639173, 0.2603092783505155, 0.22809278350515463, 0.19072164948453607, 0.16494845360824742, 0.7680412371134021, 0.13530927835051546, 0.10309278350515463, 0.09278350515463918, 0.09020618556701031, 0.08634020618556701, 0.07860824742268041, 0.07216494845360824, 0.06701030927835051, 0.061855670103092786, 0.05798969072164949, 0.05798969072164949, 0.05798969072164949, 0.05670103092783505, 0.055412371134020616, 0.05025773195876289, 0.04768041237113402, 0.04639175257731959, 0.04381443298969072, 0.04381443298969072, 0.04381443298969072, 0.24871134020618557, 0.7332474226804123, 0.8724226804123711, 0.8814432989690721, 0.9175257731958762, 0.884020618556701, 0.875, 0.8595360824742269, 0.6378865979381443, 0.06314432989690721, 0.055412371134020616, 0.05025773195876289, 0.05283505154639175, 0.04768041237113402, 0.04639175257731959, 0.04768041237113402, 0.05154639175257732, 0.055412371134020616, 0.05798969072164949, 0.06572164948453608, 0.6649484536082474, 0.740979381443299, 0.7719072164948454, 0.7757731958762887, 0.9085051546391752, 0.9278350515463918, 0.9188144329896907, 0.8079896907216495, 0.7757731958762887, 0.7564432989690721, 0.7061855670103093, 0.6443298969072165, 0.07087628865979381, 0.10051546391752578, 0.17525773195876287, 0.2603092783505155, 0.21391752577319587, 0.19458762886597938, 0.163659793814433, 0.12371134020618557, 0.11984536082474227, 0.1172680412371134, 0.11211340206185567, 0.11597938144329897, 0.11855670103092783, 0.14175257731958762, 0.30670103092783507, 0.46649484536082475, 0.6520618556701031, 0.7023195876288659, 0.8634020618556701, 0.9162371134020618, 0.9304123711340206, 0.9458762886597938, 0.9368556701030928, 0.9201030927835051, 0.9072164948453608, 0.7719072164948454, 0.6726804123711341, 0.6378865979381443, 0.36855670103092786, 0.3402061855670103, 0.33762886597938147, 0.30412371134020616, 0.25644329896907214, 0.23324742268041238, 0.19072164948453607, 0.14948453608247422, 0.024484536082474227, 0.007731958762886598, 0.002577319587628866, 0.001288659793814433, 0.001288659793814433, 0.9497422680412371, 0.9484536082474226, 0.001288659793814433, 0.001288659793814433, 0.001288659793814433, 0.7332474226804123, 0.9265463917525774, 0.8234536082474226, 0.6842783505154639, 0.003865979381443299, 0.010309278350515464, 0.010309278350515464, 0.003865979381443299, 0.9162371134020618, 0.002577319587628866, 0.003865979381443299, 0.003865979381443299, 0.003865979381443299, 0.005154639175257732, 0.006443298969072165, 0.5876288659793815, 0.00902061855670103, 0.5850515463917526, 0.00902061855670103, 0.00902061855670103, 0.12886597938144329, 0.13144329896907217, 0.2345360824742268, 0.01804123711340206, 0.010309278350515464, 0.01288659793814433, 0.01675257731958763, 0.019329896907216496, 0.05412371134020619, 0.10051546391752578, 0.6314432989690721], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CpcD.gap.json b/pfam_gap_rates/CpcD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b619ec4acc02a6828171e229e1d1325f98b5230f
--- /dev/null
+++ b/pfam_gap_rates/CpcD.gap.json
@@ -0,0 +1 @@
+{"family": "CpcD", "n_seqs": 282, "length": 58, "gap_rates": [0.4645390070921986, 0.0851063829787234, 0.03546099290780142, 0.031914893617021274, 0.031914893617021274, 0.024822695035460994, 0.024822695035460994, 0.024822695035460994, 0.024822695035460994, 0.024822695035460994, 0.028368794326241134, 0.024822695035460994, 0.01773049645390071, 0.6276595744680851, 0.13120567375886524, 0.14184397163120568, 0.4219858156028369, 0.5177304964539007, 0.3971631205673759, 0.06382978723404255, 0.0425531914893617, 0.5602836879432624, 0.014184397163120567, 0.0, 0.0, 0.0, 0.0, 0.0035460992907801418, 0.0, 0.0, 0.0, 0.0, 0.6879432624113475, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035460992907801418, 0.0070921985815602835, 0.031914893617021274, 0.450354609929078], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cript.gap.json b/pfam_gap_rates/Cript.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dda91f88cc52130c92a5bb6e96907a695f04213b
--- /dev/null
+++ b/pfam_gap_rates/Cript.gap.json
@@ -0,0 +1 @@
+{"family": "Cript", "n_seqs": 219, "length": 118, "gap_rates": [0.4155251141552511, 0.1415525114155251, 0.1232876712328767, 0.1187214611872146, 0.1095890410958904, 0.1004566210045662, 0.8493150684931506, 0.8493150684931506, 0.8493150684931506, 0.8493150684931506, 0.8493150684931506, 0.8493150684931506, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.8264840182648402, 0.8264840182648402, 0.8264840182648402, 0.8447488584474886, 0.8721461187214612, 0.9223744292237442, 0.9406392694063926, 0.8995433789954338, 0.8538812785388128, 0.8401826484018264, 0.8264840182648402, 0.8264840182648402, 0.8264840182648402, 0.0958904109589041, 0.0958904109589041, 0.1324200913242009, 0.1552511415525114, 0.1552511415525114, 0.136986301369863, 0.1324200913242009, 0.4977168949771689, 0.0867579908675799, 0.0593607305936073, 0.0593607305936073, 0.2328767123287671, 0.1917808219178082, 0.1872146118721461, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.9406392694063926, 0.9360730593607306, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.8949771689497716, 0.9041095890410958, 0.863013698630137, 0.0639269406392694, 0.5799086757990868, 0.1735159817351598, 0.0410958904109589, 0.0182648401826484, 0.0228310502283105, 0.0319634703196347, 0.0319634703196347, 0.0228310502283105, 0.4520547945205479, 0.410958904109589, 0.2602739726027397, 0.9269406392694064, 0.9497716894977168, 0.9497716894977168, 0.9406392694063926, 0.8264840182648402, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0228310502283105, 0.0273972602739726, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.4018264840182648, 0.0593607305936073, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0410958904109589, 0.045662100456621, 0.0502283105022831, 0.0502283105022831, 0.0502283105022831, 0.0684931506849315, 0.0776255707762557, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0867579908675799, 0.0867579908675799, 0.0867579908675799, 0.0867579908675799, 0.1232876712328767, 0.1050228310502283, 0.1095890410958904, 0.1187214611872146, 0.1598173515981735, 0.1780821917808219, 0.2054794520547945, 0.2191780821917808, 0.2968036529680365], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CsrA.gap.json b/pfam_gap_rates/CsrA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5acdf01afeb01d1928f0d28de788bea8e223cdd3
--- /dev/null
+++ b/pfam_gap_rates/CsrA.gap.json
@@ -0,0 +1 @@
+{"family": "CsrA", "n_seqs": 807, "length": 53, "gap_rates": [0.05328376703841388, 0.03965303593556382, 0.03841387856257745, 0.03717472118959108, 0.03717472118959108, 0.03593556381660471, 0.03469640644361834, 0.03469640644361834, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.01486988847583643, 0.013630731102850062, 0.013630731102850062, 0.012391573729863693, 0.011152416356877323, 0.009913258983890954, 0.009913258983890954, 0.006195786864931847, 0.0037174721189591076, 0.0024783147459727386, 0.0024783147459727386, 0.0024783147459727386, 0.0024783147459727386, 0.0012391573729863693, 0.011152416356877323, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0024783147459727386, 0.0012391573729863693, 0.0024783147459727386, 0.0024783147459727386, 0.0037174721189591076, 0.004956629491945477, 0.007434944237918215, 0.007434944237918215, 0.009913258983890954, 0.009913258983890954, 0.011152416356877323, 0.012391573729863693, 0.0161090458488228, 0.01982651796778191, 0.024783147459727387, 0.03717472118959108, 0.058240396530359353, 0.08302354399008674, 0.19330855018587362, 0.27261462205700127, 0.7571251548946716], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cupin_4.gap.json b/pfam_gap_rates/Cupin_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..883ba0a591f1fe95ec0d69d7a61f99ca707fd23c
--- /dev/null
+++ b/pfam_gap_rates/Cupin_4.gap.json
@@ -0,0 +1 @@
+{"family": "Cupin_4", "n_seqs": 725, "length": 361, "gap_rates": [0.7793103448275862, 0.42758620689655175, 0.3737931034482759, 0.36137931034482756, 0.35310344827586204, 0.3489655172413793, 0.34620689655172415, 0.34206896551724136, 0.34206896551724136, 0.34206896551724136, 0.3406896551724138, 0.33793103448275863, 0.33793103448275863, 0.33655172413793105, 0.33655172413793105, 0.33793103448275863, 0.33379310344827584, 0.33379310344827584, 0.33241379310344826, 0.33379310344827584, 0.3310344827586207, 0.9296551724137931, 0.776551724137931, 0.35724137931034483, 0.33241379310344826, 0.32827586206896553, 0.32275862068965516, 0.32275862068965516, 0.32275862068965516, 0.32275862068965516, 0.3586206896551724, 0.35586206896551725, 0.3213793103448276, 0.3213793103448276, 0.32275862068965516, 0.32, 0.31862068965517243, 0.31862068965517243, 0.31862068965517243, 0.31862068965517243, 0.3158620689655172, 0.31448275862068964, 0.31310344827586206, 0.31448275862068964, 0.31448275862068964, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Cutinase.gap.json b/pfam_gap_rates/Cutinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9443dde07f869e3010acf2a2825c15e988afc510
--- /dev/null
+++ b/pfam_gap_rates/Cutinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cystatin.gap.json b/pfam_gap_rates/Cystatin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ffc42a24b7406ea9293a39dec7786557753be3ed
--- /dev/null
+++ b/pfam_gap_rates/Cystatin.gap.json
@@ -0,0 +1 @@
+{"family": "Cystatin", "n_seqs": 639, "length": 101, "gap_rates": [0.5884194053208138, 0.5383411580594679, 0.5054773082942097, 0.431924882629108, 0.37715179968701096, 0.3286384976525822, 0.27856025039123633, 0.24413145539906103, 0.21752738654147105, 0.16588419405320814, 0.14084507042253522, 0.13145539906103287, 0.12050078247261346, 0.10172143974960876, 0.08763693270735524, 0.081377151799687, 0.07355242566510173, 0.07042253521126761, 0.056338028169014086, 0.046948356807511735, 0.0406885758998435, 0.0406885758998435, 0.0406885758998435, 0.04225352112676056, 0.03599374021909233, 0.03286384976525822, 0.03129890453834116, 0.03129890453834116, 0.3302034428794992, 0.2519561815336463, 0.050078247261345854, 0.04225352112676056, 0.03912363067292645, 0.03599374021909233, 0.02190923317683881, 0.018779342723004695, 0.02034428794992175, 0.010954616588419406, 0.004694835680751174, 0.003129890453834116, 0.004694835680751174, 0.006259780907668232, 0.014084507042253521, 0.003129890453834116, 0.004694835680751174, 0.010954616588419406, 0.014084507042253521, 0.01564945226917058, 0.02034428794992175, 0.02034428794992175, 0.94679186228482, 0.04381846635367762, 0.018779342723004695, 0.018779342723004695, 0.018779342723004695, 0.02190923317683881, 0.02190923317683881, 0.025039123630672927, 0.03755868544600939, 0.03912363067292645, 0.050078247261345854, 0.07511737089201878, 0.10954616588419405, 0.10015649452269171, 0.11737089201877934, 0.3380281690140845, 0.7683881064162754, 0.9483568075117371, 0.9107981220657277, 0.5586854460093896, 0.15179968701095461, 0.14553990610328638, 0.14397496087636932, 0.15336463223787167, 0.15492957746478872, 0.16588419405320814, 0.1705790297339593, 0.18779342723004694, 0.20187793427230047, 0.21439749608763695, 0.28482003129890454, 0.41471048513302033, 0.7355242566510172, 0.8904538341158059, 0.7057902973395931, 0.3270735524256651, 0.3380281690140845, 0.3458528951486698, 0.3474178403755869, 0.3536776212832551, 0.3646322378716745, 0.3677621283255086, 0.38028169014084506, 0.3974960876369327, 0.4131455399061033, 0.433489827856025, 0.48982785602503914, 0.5211267605633803, 0.5712050078247262, 0.6416275430359938, 0.7402190923317684], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyt_bd_oxida_II.gap.json b/pfam_gap_rates/Cyt_bd_oxida_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78ceec1ade6bfdaf018daa0bb57ac2d93c4c853a
--- /dev/null
+++ b/pfam_gap_rates/Cyt_bd_oxida_II.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_C.gap.json b/pfam_gap_rates/Cytochrom_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34c38e457a12fcac11aff99455d67993f9ae9912
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_C.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrom_C", "n_seqs": 5000, "length": 159, "gap_rates": [0.7642, 0.398, 0.2188, 0.1598, 0.144, 0.1268, 0.1096, 0.0984, 0.5914, 0.1176, 0.1488, 0.9, 0.9416, 0.9156, 0.8944, 0.0086, 0.0018, 0.0014, 0.0012, 0.0012, 0.0012, 0.9152, 0.002, 0.002, 0.0014, 0.0012, 0.001, 0.0012, 0.0022, 0.006, 0.1234, 0.1312, 0.5224, 0.6746, 0.7148, 0.7352, 0.7536, 0.7638, 0.8092, 0.8292, 0.8428, 0.8556, 0.868, 0.8724, 0.878, 0.8866, 0.8934, 0.9072, 0.9194, 0.932, 0.9406, 0.948, 0.9356, 0.921, 0.9186, 0.9006, 0.8914, 0.8846, 0.8742, 0.8708, 0.865, 0.8504, 0.8362, 0.82, 0.7688, 0.7596, 0.7476, 0.726, 0.6922, 0.6518, 0.2324, 0.0106, 0.0086, 0.008, 0.0092, 0.0078, 0.0088, 0.008, 0.0076, 0.0138, 0.0122, 0.0112, 0.0104, 0.009, 0.0134, 0.0154, 0.0128, 0.0142, 0.0142, 0.0136, 0.014, 0.0206, 0.02, 0.1812, 0.2948, 0.2662, 0.25, 0.2534, 0.2334, 0.831, 0.8558, 0.8846, 0.8952, 0.906, 0.8998, 0.8912, 0.876, 0.8426, 0.8126, 0.1516, 0.1406, 0.1328, 0.1126, 0.0884, 0.0752, 0.0824, 0.0866, 0.229, 0.215, 0.1992, 0.1914, 0.2114, 0.2136, 0.2524, 0.3562, 0.5478, 0.7668, 0.8124, 0.8276, 0.836, 0.9212, 0.9366, 0.948, 0.9456, 0.9278, 0.8584, 0.8326, 0.8174, 0.778, 0.7412, 0.3534, 0.1538, 0.0468, 0.0452, 0.0452, 0.0448, 0.045, 0.0458, 0.046, 0.046, 0.047, 0.0478, 0.049, 0.0544, 0.0726, 0.1076, 0.2186, 0.452, 0.8652], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DAG1.gap.json b/pfam_gap_rates/DAG1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7388758901f50f5e28c9455f093251b783424e39
--- /dev/null
+++ b/pfam_gap_rates/DAG1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DAGK_acc.gap.json b/pfam_gap_rates/DAGK_acc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..935f9b0e9555a2ded27bff9d1282349b7cb49bae
--- /dev/null
+++ b/pfam_gap_rates/DAGK_acc.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DAHP_synth_2.gap.json b/pfam_gap_rates/DAHP_synth_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20b94373d5df60750b9143f0bca1d579bf2d067f
--- /dev/null
+++ b/pfam_gap_rates/DAHP_synth_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DASH_Spc19.gap.json b/pfam_gap_rates/DASH_Spc19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f138bb4a88da4969b645fa49405c84fac54bef0
--- /dev/null
+++ b/pfam_gap_rates/DASH_Spc19.gap.json
@@ -0,0 +1 @@
+{"family": "DASH_Spc19", "n_seqs": 119, "length": 164, "gap_rates": [0.37815126050420167, 0.226890756302521, 0.11764705882352941, 0.09243697478991597, 0.08403361344537816, 0.07563025210084033, 0.07563025210084033, 0.058823529411764705, 0.058823529411764705, 0.05042016806722689, 0.04201680672268908, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.025210084033613446, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.03361344537815126, 0.25210084033613445, 0.24369747899159663, 0.23529411764705882, 0.2184873949579832, 0.21008403361344538, 0.15966386554621848, 0.12605042016806722, 0.09243697478991597, 0.058823529411764705, 0.05042016806722689, 0.05042016806722689, 0.09243697478991597, 0.09243697478991597, 0.14285714285714285, 0.15126050420168066, 0.31932773109243695, 0.3445378151260504, 0.3277310924369748, 0.3277310924369748, 0.4957983193277311, 0.453781512605042, 0.47058823529411764, 0.5210084033613446, 0.5210084033613446, 0.42857142857142855, 0.3445378151260504, 0.15126050420168066, 0.680672268907563, 0.7310924369747899, 0.8067226890756303, 0.8319327731092437, 0.8739495798319328, 0.907563025210084, 0.9495798319327731, 0.9495798319327731, 0.9327731092436975, 0.8991596638655462, 0.8487394957983193, 0.8319327731092437, 0.7563025210084033, 0.6974789915966386, 0.6722689075630253, 0.06722689075630252, 0.058823529411764705, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.058823529411764705, 0.06722689075630252, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.10084033613445378, 0.12605042016806722, 0.20168067226890757, 0.2773109243697479], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DCP1.gap.json b/pfam_gap_rates/DCP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfd8624b835c4725739b82b2175ff9e050862105
--- /dev/null
+++ b/pfam_gap_rates/DCP1.gap.json
@@ -0,0 +1 @@
+{"family": "DCP1", "n_seqs": 369, "length": 153, "gap_rates": [0.9186991869918699, 0.4092140921409214, 0.19241192411924118, 0.10840108401084012, 0.0921409214092141, 0.08672086720867209, 0.08130081300813008, 0.08130081300813008, 0.07588075880758807, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.06775067750677506, 0.06775067750677506, 0.06775067750677506, 0.06775067750677506, 0.06775067750677506, 0.06775067750677506, 0.06775067750677506, 0.07046070460704607, 0.06775067750677506, 0.06504065040650407, 0.056910569105691054, 0.056910569105691054, 0.05420054200542006, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.05962059620596206, 0.2086720867208672, 0.23848238482384823, 0.07046070460704607, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.04065040650406504, 0.04878048780487805, 0.05420054200542006, 0.05420054200542006, 0.05420054200542006, 0.056910569105691054, 0.056910569105691054, 0.05962059620596206, 0.05962059620596206, 0.056910569105691054, 0.05420054200542006, 0.056910569105691054, 0.056910569105691054, 0.05420054200542006, 0.8726287262872628, 0.8861788617886179, 0.9376693766937669, 0.948509485094851, 0.9024390243902439, 0.8726287262872628, 0.8699186991869918, 0.06775067750677506, 0.06775067750677506, 0.9024390243902439, 0.9024390243902439, 0.943089430894309, 0.9024390243902439, 0.9024390243902439, 0.08672086720867209, 0.06504065040650407, 0.05962059620596206, 0.05962059620596206, 0.05962059620596206, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.051490514905149054, 0.051490514905149054, 0.051490514905149054, 0.051490514905149054, 0.051490514905149054, 0.051490514905149054, 0.04065040650406504, 0.04336043360433604, 0.04336043360433604, 0.04607046070460705, 0.04878048780487805, 0.04878048780487805, 0.04607046070460705, 0.04607046070460705, 0.04607046070460705, 0.9295392953929539, 0.940379403794038, 0.940379403794038, 0.943089430894309, 0.948509485094851, 0.94579945799458, 0.943089430894309, 0.940379403794038, 0.940379403794038, 0.9295392953929539, 0.056910569105691054, 0.04607046070460705, 0.04607046070460705, 0.04607046070460705, 0.04607046070460705, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.051490514905149054, 0.05420054200542006, 0.05420054200542006, 0.05420054200542006, 0.056910569105691054, 0.056910569105691054, 0.07588075880758807, 0.0975609756097561, 0.10569105691056911, 0.1897018970189702, 0.7100271002710027, 0.7642276422764228, 0.8590785907859079, 0.8997289972899729, 0.9159891598915989, 0.9349593495934959, 0.94579945799458, 0.94579945799458, 0.9376693766937669, 0.926829268292683, 0.9024390243902439, 0.8888888888888888, 0.7967479674796748, 0.7317073170731707, 0.6720867208672087, 0.14092140921409213, 0.12737127371273713, 0.12737127371273713, 0.12737127371273713, 0.13008130081300814, 0.13008130081300814, 0.12737127371273713, 0.13008130081300814, 0.13008130081300814, 0.13821138211382114, 0.16531165311653118, 0.1897018970189702, 0.21951219512195122, 0.22493224932249323, 0.22764227642276422, 0.24932249322493225, 0.26558265582655827, 0.2845528455284553, 0.34417344173441733, 0.36585365853658536, 0.5013550135501355], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_1_3.gap.json b/pfam_gap_rates/DDE_Tnp_1_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cacca90f2ee8db66c8577d38f097c0f3088ac0bd
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_1_3.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_1_3", "n_seqs": 415, "length": 163, "gap_rates": [0.9421686746987952, 0.6674698795180722, 0.6168674698795181, 0.5590361445783133, 0.4843373493975904, 0.45542168674698796, 0.41445783132530123, 0.3566265060240964, 0.3060240963855422, 0.3036144578313253, 0.3060240963855422, 0.3060240963855422, 0.3036144578313253, 0.30120481927710846, 0.2963855421686747, 0.29397590361445786, 0.27951807228915665, 0.27710843373493976, 0.27710843373493976, 0.27710843373493976, 0.27710843373493976, 0.27710843373493976, 0.27228915662650605, 0.27228915662650605, 0.27228915662650605, 0.27228915662650605, 0.25301204819277107, 0.25542168674698795, 0.2385542168674699, 0.24096385542168675, 0.236144578313253, 0.24819277108433735, 0.2385542168674699, 0.2385542168674699, 0.2385542168674699, 0.2385542168674699, 0.946987951807229, 0.2385542168674699, 0.2385542168674699, 0.2457831325301205, 0.23373493975903614, 0.8891566265060241, 0.8626506024096385, 0.236144578313253, 0.2385542168674699, 0.236144578313253, 0.236144578313253, 0.2385542168674699, 0.2385542168674699, 0.26987951807228916, 0.27228915662650605, 0.27228915662650605, 0.26506024096385544, 0.25783132530120484, 0.26024096385542167, 0.22650602409638554, 0.22409638554216868, 0.22650602409638554, 0.22650602409638554, 0.2289156626506024, 0.236144578313253, 0.21445783132530122, 0.21204819277108433, 0.20963855421686747, 0.20722891566265061, 0.20240963855421687, 0.20240963855421687, 0.20240963855421687, 0.20481927710843373, 0.20481927710843373, 0.20481927710843373, 0.21204819277108433, 0.22409638554216868, 0.2289156626506024, 0.2289156626506024, 0.2289156626506024, 0.21686746987951808, 0.8144578313253013, 0.8024096385542169, 0.21445783132530122, 0.21204819277108433, 0.20963855421686747, 0.21204819277108433, 0.20963855421686747, 0.20722891566265061, 0.20481927710843373, 0.9421686746987952, 0.19759036144578312, 0.19518072289156627, 0.9397590361445783, 0.19518072289156627, 0.19518072289156627, 0.18795180722891566, 0.18795180722891566, 0.18795180722891566, 0.18795180722891566, 0.1855421686746988, 0.18313253012048192, 0.19036144578313252, 0.19518072289156627, 0.20240963855421687, 0.21686746987951808, 0.20963855421686747, 0.23132530120481928, 0.23373493975903614, 0.236144578313253, 0.24096385542168675, 0.24096385542168675, 0.24096385542168675, 0.24096385542168675, 0.8554216867469879, 0.24096385542168675, 0.24096385542168675, 0.2385542168674699, 0.23373493975903614, 0.23373493975903614, 0.24819277108433735, 0.25783132530120484, 0.26024096385542167, 0.2457831325301205, 0.24819277108433735, 0.2385542168674699, 0.21445783132530122, 0.21686746987951808, 0.23132530120481928, 0.2433734939759036, 0.25301204819277107, 0.2433734939759036, 0.2385542168674699, 0.25060240963855424, 0.23132530120481928, 0.2289156626506024, 0.236144578313253, 0.23373493975903614, 0.2289156626506024, 0.23373493975903614, 0.2289156626506024, 0.22650602409638554, 0.22650602409638554, 0.236144578313253, 0.23132530120481928, 0.22409638554216868, 0.2289156626506024, 0.2289156626506024, 0.236144578313253, 0.2457831325301205, 0.25060240963855424, 0.27228915662650605, 0.27951807228915665, 0.3036144578313253, 0.3325301204819277, 0.35180722891566263, 0.3710843373493976, 0.3927710843373494, 0.39759036144578314, 0.4072289156626506, 0.44819277108433736, 0.4578313253012048, 0.4771084337349398, 0.4867469879518072, 0.4963855421686747, 0.5228915662650603, 0.7783132530120482], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_1_6.gap.json b/pfam_gap_rates/DDE_Tnp_1_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e277bd17dea142069a94ab900f34b39a0268dfb
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_1_6.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_1_6", "n_seqs": 1011, "length": 136, "gap_rates": [0.4589515331355094, 0.27200791295746785, 0.26904055390702275, 0.26211671612265086, 0.26211671612265086, 0.26211671612265086, 0.26211671612265086, 0.26112759643916916, 0.9376854599406528, 0.26508407517309596, 0.26310583580613256, 0.2591493570722057, 0.27596439169139464, 0.32245301681503463, 0.3026706231454006, 0.34421364985163205, 0.31849653808110784, 0.35014836795252224, 0.8526211671612265, 0.34124629080118696, 0.29179030662710187, 0.26112759643916916, 0.24530168150346193, 0.2413452027695351, 0.23837784371909002, 0.39465875370919884, 0.4134520276953511, 0.4579624134520277, 0.5103857566765578, 0.4520276953511375, 0.28486646884273, 0.22354104846686448, 0.20079129574678536, 0.19584569732937684, 0.19485657764589515, 0.19485657764589515, 0.18793273986152326, 0.18694362017804153, 0.18694362017804153, 0.18595450049455983, 0.18496538081107813, 0.19980217606330367, 0.19881305637982197, 0.19090009891196835, 0.17804154302670624, 0.17507418397626112, 0.17507418397626112, 0.827893175074184, 0.9208704253214639, 0.9327398615232443, 0.9386745796241345, 0.9268051434223541, 0.8753709198813057, 0.7665677546983185, 0.1671612265084075, 0.1661721068249258, 0.9297725024727992, 0.19287833827893175, 0.16221562809099901, 0.16221562809099901, 0.16122650840751732, 0.1543026706231454, 0.16122650840751732, 0.1552917903066271, 0.14540059347181009, 0.14836795252225518, 0.8615232443125618, 0.3818001978239367, 0.17408506429277942, 0.12067260138476756, 0.11275964391691394, 0.10385756676557864, 0.09396636993076163, 0.08803165182987141, 0.0830860534124629, 0.09000989119683482, 0.08011869436201781, 0.08506429277942631, 0.07319485657764589, 0.06429277942631058, 0.06033630069238378, 0.05539070227497527, 0.09099901088031652, 0.0830860534124629, 0.043521266073194856, 0.04451038575667656, 0.04846686449060336, 0.04451038575667656, 0.04154302670623145, 0.03560830860534125, 0.03560830860534125, 0.03857566765578635, 0.29179030662710187, 0.033630069238377844, 0.032640949554896145, 0.03165182987141444, 0.03066271018793274, 0.03066271018793274, 0.03165182987141444, 0.03066271018793274, 0.03165182987141444, 0.03066271018793274, 0.03066271018793274, 0.0722057368941642, 0.03956478733926805, 0.03066271018793274, 0.03066271018793274, 0.02967359050445104, 0.03066271018793274, 0.03165182987141444, 0.032640949554896145, 0.033630069238377844, 0.036597428288822946, 0.036597428288822946, 0.03956478733926805, 0.040553907022749754, 0.04253214638971316, 0.04648862512363996, 0.04846686449060336, 0.050445103857566766, 0.05440158259149357, 0.05341246290801187, 0.05440158259149357, 0.05440158259149357, 0.05440158259149357, 0.057368941641938676, 0.05934718100890208, 0.06330365974282888, 0.06726013847675569, 0.0781404549950544, 0.08011869436201781, 0.0830860534124629, 0.08902077151335312, 0.10089020771513353, 0.1394658753709199, 0.7606330365974283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_4.gap.json b/pfam_gap_rates/DDE_Tnp_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab2bbfd01d49a00527fb9755959bf38a2f8a2923
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_4.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_4", "n_seqs": 3263, "length": 194, "gap_rates": [0.4511186025130248, 0.4063745019920319, 0.39380937787312287, 0.3892123812442538, 0.3812442537542139, 0.37664725712534475, 0.37358259270609867, 0.3723567269384002, 0.370211461844928, 0.3643885994483604, 0.3643885994483604, 0.3637756665645112, 0.37664725712534475, 0.816426601287159, 0.7977321483297579, 0.6923076923076923, 0.34201654918786395, 0.33282255593012566, 0.32638676064970884, 0.3217897640208397, 0.3202574318112167, 0.3199509653692921, 0.31749923383389517, 0.3089181734600061, 0.3037082439472878, 0.3012565124118909, 0.29911124731841865, 0.2926754520380018, 0.28593319031566045, 0.2794973950352436, 0.2752068648482991, 0.2687710695678823, 0.25007661661048114, 0.23935029114311984, 0.2316886300950046, 0.22770456634998468, 0.22617223414036164, 0.224333435488814, 0.22372050260496476, 0.22280110327919092, 0.21912350597609562, 0.2151394422310757, 0.21452650934722647, 0.2123812442537542, 0.20809071406680968, 0.20809071406680968, 0.2056389825314128, 0.2148329757891511, 0.20165491878639288, 0.20042905301869446, 0.19950965369292062, 0.19613852283174993, 0.19797732148329758, 0.19675145571559916, 0.19644498927367454, 0.19736438859944835, 0.19736438859944835, 0.19613852283174993, 0.19889672080907142, 0.2022678516702421, 0.20655838185718664, 0.22065583818571866, 0.22739809990806006, 0.22004290530186946, 0.2151394422310757, 0.21973643885994484, 0.22034937174379404, 0.3797119215445909, 0.37358259270609867, 0.7916028194912657, 0.796812749003984, 0.8044744100520993, 0.8268464603125958, 0.8976402083971805, 0.9083665338645418, 0.9353355807539074, 0.9016242721422004, 0.8605577689243028, 0.8109102053325161, 0.7998774134232302, 0.7931351517008888, 0.7912963530493411, 0.5249770150168557, 0.4606190622126877, 0.6506282562059454, 0.816426601287159, 0.9255286546123199, 0.8777198896720809, 0.7594238430891818, 0.5792215752375115, 0.37572785779957096, 0.35243640821330063, 0.25651241189089796, 0.22494636837266319, 0.9249157217284707, 0.18786392889978548, 0.17989580140974562, 0.17468587189702728, 0.16978240882623352, 0.16702421084891203, 0.16395954642966595, 0.16334661354581673, 0.16120134845234446, 0.1630401471038921, 0.1648789457554398, 0.17100827459393197, 0.1719276739197058, 0.1719276739197058, 0.9469813055470426, 0.9313515170088875, 0.25957707631014404, 0.23996322402696904, 0.19491265706405148, 0.19491265706405148, 0.18847686178363468, 0.19000919399325775, 0.3711308611707018, 0.6417407293901318, 0.7974256818878332, 0.8136684033098376, 0.8348145878026356, 0.8660741648789457, 0.9132699969353356, 0.8394115844315048, 0.8286852589641435, 0.8047808764940239, 0.7750536316273368, 0.6150781489426908, 0.35519460619062215, 0.28041679436101746, 0.2114618449279804, 0.20778424762488507, 0.20778424762488507, 0.21667177444069874, 0.19613852283174993, 0.1927673919705792, 0.1881703953417101, 0.1826539993870671, 0.18296046582899173, 0.1826539993870671, 0.18296046582899173, 0.185105730922464, 0.1854121973643886, 0.18602513024823783, 0.18755746245786087, 0.19399325773827766, 0.1946061906221269, 0.19644498927367454, 0.19797732148329758, 0.19981612013484523, 0.20134845234446827, 0.20073551946061907, 0.204719583205639, 0.2059454489733374, 0.20901011339258352, 0.21330064357952805, 0.21697824088262335, 0.22065583818571866, 0.2252528348145878, 0.3748084584737971, 0.24241495556236592, 0.24425375421391357, 0.24793135151700887, 0.2513024823781796, 0.25406068035550106, 0.9402390438247012, 0.9080600674226172, 0.27336806619675147, 0.3343548881397487, 0.2788844621513944, 0.2871590560833589, 0.28777198896720807, 0.29359485136377567, 0.2981918479926448, 0.7676984370211462, 0.9472877719889672, 0.9482071713147411, 0.9316579834508122, 0.3181121667177444, 0.3199509653692921, 0.3199509653692921, 0.3224026969046889, 0.3257738277658596, 0.3282255593012565, 0.33067729083665337, 0.3371130861170702, 0.3414036163040147, 0.34354888139748696, 0.34722647870058226, 0.3536622739809991, 0.3570334048421698, 0.364695065890285, 0.3806313208703647, 0.4115844315047502], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_ISL3.gap.json b/pfam_gap_rates/DDE_Tnp_ISL3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44dbf5e98848358f3641cd8ae48ddaf573ae76a7
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_ISL3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DENN.gap.json b/pfam_gap_rates/DENN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8da54ef76e4b7c62b68d48f633144f63be318455
--- /dev/null
+++ b/pfam_gap_rates/DENN.gap.json
@@ -0,0 +1 @@
+{"family": "DENN", "n_seqs": 1313, "length": 237, "gap_rates": [0.7936024371667936, 0.543031226199543, 0.4127951256664128, 0.32597105864432596, 0.2993145468392993, 0.2901751713632902, 0.2901751713632902, 0.2878903274942879, 0.2871287128712871, 0.2871287128712871, 0.2871287128712871, 0.2863670982482864, 0.2856054836252856, 0.28484386900228487, 0.2840822543792841, 0.2840822543792841, 0.2833206397562833, 0.2817974105102818, 0.9474485910129474, 0.2802741812642803, 0.2795125666412795, 0.2757044935262757, 0.2741812642802742, 0.2741812642802742, 0.27265803503427266, 0.27265803503427266, 0.27265803503427266, 0.27265803503427266, 0.2718964204112719, 0.2718964204112719, 0.26961157654226964, 0.26884996191926885, 0.26656511805026656, 0.26580350342726583, 0.5087585681645087, 0.7776085300837776, 0.8172124904798173, 0.8255902513328256, 0.8309215536938309, 0.8354912414318355, 0.8400609291698401, 0.8895658796648895, 0.8941355674028941, 0.8987052551408987, 0.904036557501904, 0.9108910891089109, 0.9162223914699162, 0.9215536938309216, 0.9284082254379284, 0.9337395277989338, 0.9444021325209444, 0.9497334348819497, 0.9482102056359482, 0.9337395277989338, 0.9306930693069307, 0.9246001523229246, 0.9192688499619193, 0.9131759329779132, 0.9063214013709063, 0.9017517136329017, 0.897943640517898, 0.8926123381568926, 0.8880426504188881, 0.8377760853008378, 0.8332063975628332, 0.8278750952018279, 0.824067022086824, 0.7928408225437928, 0.6778370144706778, 0.5171363290175172, 0.2924600152322925, 0.26884996191926885, 0.26428027418126426, 0.2559025133282559, 0.24980959634424982, 0.24904798172124903, 0.24676313785224677, 0.24980959634424982, 0.24676313785224677, 0.5476009139375476, 0.25514089870525514, 0.24295506473724296, 0.2421934501142422, 0.2718964204112719, 0.23914699162223915, 0.23533891850723535, 0.23533891850723535, 0.23305407463823305, 0.2322924600152323, 0.23153084539223154, 0.2284843869002285, 0.22772277227722773, 0.22543792840822544, 0.22543792840822544, 0.22543792840822544, 0.4706778370144707, 0.45163747143945165, 0.7722772277227723, 0.9101294744859101, 0.9474485910129474, 0.9299314546839299, 0.7897943640517898, 0.7517136329017517, 0.34044173648134046, 0.23914699162223915, 0.23000761614623, 0.2086824067022087, 0.20106626047220105, 0.19725818735719725, 0.19268849961919268, 0.18964204112718963, 0.18735719725818736, 0.18354912414318356, 0.18202589489718202, 0.178979436405179, 0.1782178217821782, 0.8339680121858339, 0.17136329017517135, 0.16755521706016754, 0.16146230007616147, 0.16146230007616147, 0.341964965727342, 0.32063975628332064, 0.8804265041888805, 0.7738004569687738, 0.14927646610814926, 0.13556740289413557, 0.12338156892612338, 0.11271896420411272, 0.10205635948210205, 0.09291698400609291, 0.08377760853008377, 0.07844630616907845, 0.07768469154607768, 0.07692307692307693, 0.07387661843107388, 0.07387661843107388, 0.07387661843107388, 0.07311500380807312, 0.07083015993907082, 0.07083015993907082, 0.06854531607006854, 0.06778370144706779, 0.06930693069306931, 0.06702208682406702, 0.06626047220106626, 0.06626047220106626, 0.06778370144706779, 0.06778370144706779, 0.06854531607006854, 0.06778370144706779, 0.92003046458492, 0.06626047220106626, 0.06321401370906321, 0.062452399086062454, 0.06321401370906321, 0.06473724295506474, 0.06854531607006854, 0.06778370144706779, 0.06626047220106626, 0.06397562833206398, 0.06778370144706779, 0.06854531607006854, 0.0654988575780655, 0.0654988575780655, 0.06473724295506474, 0.0654988575780655, 0.06626047220106626, 0.0654988575780655, 0.06169078446306169, 0.062452399086062454, 0.0594059405940594, 0.057882711348057884, 0.05712109672505712, 0.05635948210205636, 0.05712109672505712, 0.05712109672505712, 0.057882711348057884, 0.0594059405940594, 0.05864432597105865, 0.05635948210205636, 0.05635948210205636, 0.05712109672505712, 0.05635948210205636, 0.05712109672505712, 0.060167555217060166, 0.060167555217060166, 0.05864432597105865, 0.06169078446306169, 0.06092916984006093, 0.06169078446306169, 0.06169078446306169, 0.062452399086062454, 0.06397562833206398, 0.06321401370906321, 0.948971820258949, 0.06473724295506474, 0.0654988575780655, 0.06778370144706779, 0.9261233815689262, 0.0715917745620716, 0.07311500380807312, 0.07387661843107388, 0.07387661843107388, 0.07463823305407463, 0.0753998476770754, 0.0753998476770754, 0.07844630616907845, 0.08225437928408226, 0.08301599390708302, 0.08682406702208682, 0.09748667174409749, 0.10814927646610815, 0.11348057882711349, 0.1188118811881188, 0.12795125666412796, 0.8035034272658035, 0.9405940594059405, 0.9055597867479056, 0.5963442498095963, 0.5148514851485149, 0.18583396801218582, 0.17517136329017516, 0.17136329017517135, 0.17136329017517135, 0.17593297791317594, 0.1782178217821782, 0.18354912414318356, 0.1865955826351866, 0.19268849961919268, 0.1964965727341965, 0.19725818735719725, 0.19725818735719725, 0.20335110434120335, 0.21706016755521707, 0.32520944402132523, 0.734958111195735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DHQ_synthase.gap.json b/pfam_gap_rates/DHQ_synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae9e9b0f81500efa01358114e33cd6767b1c985e
--- /dev/null
+++ b/pfam_gap_rates/DHQ_synthase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DICT.gap.json b/pfam_gap_rates/DICT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf955291a208e36b40876685f64d97214b184d8b
--- /dev/null
+++ b/pfam_gap_rates/DICT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DIT1_PvcA.gap.json b/pfam_gap_rates/DIT1_PvcA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26dc181daf8d75a5ced87035b25d0de7a390dfba
--- /dev/null
+++ b/pfam_gap_rates/DIT1_PvcA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DM.gap.json b/pfam_gap_rates/DM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..390851810c613a36fcd73f81adb3696dba0b92d2
--- /dev/null
+++ b/pfam_gap_rates/DM.gap.json
@@ -0,0 +1 @@
+{"family": "DM", "n_seqs": 476, "length": 47, "gap_rates": [0.28361344537815125, 0.18067226890756302, 0.05672268907563025, 0.04201680672268908, 0.037815126050420166, 0.03571428571428571, 0.03361344537815126, 0.03571428571428571, 0.031512605042016806, 0.031512605042016806, 0.031512605042016806, 0.031512605042016806, 0.031512605042016806, 0.025210084033613446, 0.023109243697478993, 0.023109243697478993, 0.023109243697478993, 0.025210084033613446, 0.02100840336134454, 0.02100840336134454, 0.07352941176470588, 0.06512605042016807, 0.018907563025210083, 0.01680672268907563, 0.014705882352941176, 0.012605042016806723, 0.014705882352941176, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.018907563025210083, 0.018907563025210083, 0.025210084033613446, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04831932773109244, 0.05672268907563025, 0.05672268907563025, 0.058823529411764705, 0.06512605042016807, 0.1134453781512605, 0.15546218487394958, 0.21008403361344538, 0.24369747899159663, 0.31092436974789917, 0.3697478991596639], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DMT_6.gap.json b/pfam_gap_rates/DMT_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..559aac16af264537aa4a1e36dde20d420ab58184
--- /dev/null
+++ b/pfam_gap_rates/DMT_6.gap.json
@@ -0,0 +1 @@
+{"family": "DMT_6", "n_seqs": 311, "length": 116, "gap_rates": [0.3890675241157556, 0.0932475884244373, 0.05144694533762058, 0.03858520900321544, 0.03536977491961415, 0.03536977491961415, 0.03536977491961415, 0.03536977491961415, 0.03536977491961415, 0.03536977491961415, 0.03536977491961415, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.5980707395498392, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.7684887459807074, 0.7781350482315113, 0.7845659163987139, 0.7813504823151125, 0.7781350482315113, 0.7459807073954984, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.6302250803858521, 0.7781350482315113, 0.7781350482315113, 0.7459807073954984, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.797427652733119, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.00964630225080386, 0.012861736334405145, 0.05466237942122187], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_ligase_A_M.gap.json b/pfam_gap_rates/DNA_ligase_A_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be7ddf6d8259c60f62f7bdd8bab8c76af01f05cc
--- /dev/null
+++ b/pfam_gap_rates/DNA_ligase_A_M.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_ligase_A_M", "n_seqs": 2579, "length": 238, "gap_rates": [0.5393563396665374, 0.46452113222179137, 0.4455215199689802, 0.4377665761923226, 0.43505234587049246, 0.43156262117099653, 0.42652190771616905, 0.41993020550601007, 0.9430011632415665, 0.47150058162078323, 0.45870492438929816, 0.4664598681659558, 0.45288871655680496, 0.44668476153547887, 0.449398991857309, 0.4214811942613416, 0.40946103140752227, 0.42535866614967044, 0.9453276463745638, 0.5219077161690577, 0.23575029081039162, 0.1426909654905002, 0.12136487010469174, 0.11244668476153548, 0.130283055447848, 0.10430399379604498, 0.10430399379604498, 0.10275300504071345, 0.10236525785188057, 0.1019775106630477, 0.10236525785188057, 0.1019775106630477, 0.1019775106630477, 0.10120201628538193, 0.10042652190771617, 0.10120201628538193, 0.10042652190771617, 0.10003877471888328, 0.9146956184567662, 0.9267157813105855, 0.9232260566110896, 0.9143078712679333, 0.15199689802248934, 0.788290034897247, 0.1423032183016673, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_tau_5.gap.json b/pfam_gap_rates/DNA_pol3_tau_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b70848f86fcff7a1b525db6d6ef3bb3ae60e02d6
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_tau_5.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_tau_5", "n_seqs": 274, "length": 146, "gap_rates": [0.9051094890510949, 0.8795620437956204, 0.8795620437956204, 0.8759124087591241, 0.8722627737226277, 0.8686131386861314, 0.8613138686131386, 0.8576642335766423, 0.8467153284671532, 0.8394160583941606, 0.8284671532846716, 0.8175182481751825, 0.8138686131386861, 0.8102189781021898, 0.7700729927007299, 0.7481751824817519, 0.708029197080292, 0.6532846715328468, 0.5948905109489051, 0.5328467153284672, 0.4562043795620438, 0.3029197080291971, 0.08029197080291971, 0.06204379562043796, 0.05474452554744526, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.9343065693430657, 0.9343065693430657, 0.9343065693430657, 0.9306569343065694, 0.043795620437956206, 0.043795620437956206, 0.04744525547445255, 0.0364963503649635, 0.0364963503649635, 0.025547445255474453, 0.025547445255474453, 0.021897810218978103, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.014598540145985401, 0.014598540145985401, 0.15328467153284672, 0.01824817518248175, 0.014598540145985401, 0.01824817518248175, 0.04744525547445255, 0.058394160583941604, 0.029197080291970802, 0.021897810218978103, 0.058394160583941604, 0.051094890510948905, 0.014598540145985401, 0.01824817518248175, 0.025547445255474453, 0.032846715328467155, 0.032846715328467155, 0.025547445255474453, 0.010948905109489052, 0.032846715328467155, 0.021897810218978103, 0.014598540145985401, 0.010948905109489052, 0.014598540145985401, 0.014598540145985401, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.08394160583941605, 0.014598540145985401, 0.010948905109489052, 0.010948905109489052, 0.0072992700729927005, 0.010948905109489052, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0036496350364963502, 0.0036496350364963502, 0.0036496350364963502, 0.0072992700729927005, 0.19343065693430658, 0.05474452554744526, 0.025547445255474453, 0.05474452554744526, 0.48905109489051096, 0.21897810218978103, 0.021897810218978103, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.010948905109489052, 0.010948905109489052, 0.025547445255474453, 0.021897810218978103, 0.01824817518248175, 0.01824817518248175, 0.014598540145985401, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.021897810218978103, 0.025547445255474453, 0.025547445255474453, 0.029197080291970802, 0.0364963503649635, 0.05474452554744526, 0.072992700729927, 0.16058394160583941, 0.22627737226277372, 0.25547445255474455, 0.2773722627737226, 0.35766423357664234], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_repr_REX1B.gap.json b/pfam_gap_rates/DNA_repr_REX1B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3c7dd9afb263d4f2b7fbbc4bd8b48d3c805037c
--- /dev/null
+++ b/pfam_gap_rates/DNA_repr_REX1B.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_repr_REX1B", "n_seqs": 109, "length": 100, "gap_rates": [0.8348623853211009, 0.30275229357798167, 0.2018348623853211, 0.14678899082568808, 0.13761467889908258, 0.13761467889908258, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.11926605504587157, 0.10091743119266056, 0.08256880733944955, 0.08256880733944955, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.045871559633027525, 0.8990825688073395, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.03669724770642202, 0.03669724770642202, 0.027522935779816515, 0.8073394495412844, 0.8073394495412844, 0.7798165137614679, 0.01834862385321101, 0.009174311926605505, 0.0, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.01834862385321101, 0.027522935779816515, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.09174311926605505, 0.4036697247706422, 0.6697247706422018, 0.22935779816513763, 0.10091743119266056, 0.10091743119266056, 0.06422018348623854, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.06422018348623854, 0.08256880733944955, 0.10091743119266056, 0.11009174311926606, 0.12844036697247707, 0.1743119266055046, 0.1743119266055046, 0.1834862385321101, 0.1926605504587156, 0.22935779816513763, 0.25688073394495414, 0.27522935779816515, 0.27522935779816515, 0.29357798165137616, 0.3394495412844037, 0.44036697247706424, 0.4954128440366973], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DOCK-C2.gap.json b/pfam_gap_rates/DOCK-C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bcb9c407a56564f375bc6fa479b2630971e8c368
--- /dev/null
+++ b/pfam_gap_rates/DOCK-C2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DPBB_1.gap.json b/pfam_gap_rates/DPBB_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a84447796324b1bce8c93a84e99ffd0f0b9a5aa8
--- /dev/null
+++ b/pfam_gap_rates/DPBB_1.gap.json
@@ -0,0 +1 @@
+{"family": "DPBB_1", "n_seqs": 2743, "length": 123, "gap_rates": [0.7706890266131973, 0.4327378782355086, 0.24389354721108275, 0.17462632154575283, 0.14072183740430186, 0.11921254101348888, 0.10900473933649289, 0.10462996718920889, 0.10317170980678089, 0.9325555960627051, 0.6675173168064163, 0.10353627415238789, 0.14947138169886984, 0.0973386802770689, 0.6350710900473934, 0.6901203062340503, 0.915785636164783, 0.6769959897921983, 0.5858549033904484, 0.08822457163689391, 0.08640174990885892, 0.08457892818082391, 0.08348523514400291, 0.08129784907036092, 0.08056872037914692, 0.07874589865111192, 0.07728764126868393, 0.07510025519504193, 0.07291286912139992, 0.06671527524608094, 0.3966460080204156, 0.38352169157856364, 0.1841049945315348, 0.09041195771053591, 0.06926722566532993, 0.07983959168793292, 0.1068173532628509, 0.4859642726941305, 0.8982865475756471, 0.9066715275246081, 0.9125045570543201, 0.938753189938024, 0.9485964272694131, 0.944586219467736, 0.9241706161137441, 0.907765220561429, 0.9059423988333941, 0.8971928545388261, 0.46919431279620855, 0.44622675902296755, 0.34998177178271966, 0.26686110098432375, 0.3937294932555596, 0.022967553773240976, 0.01859278162595698, 0.01859278162595698, 0.5927816259569814, 0.5676266861100985, 0.3696682464454976, 0.38206343419613564, 0.4826831935836675, 0.3204520597885527, 0.004374772147283996, 0.0025519504192489974, 0.0025519504192489974, 0.002187386073641998, 0.002187386073641998, 0.001093693036820999, 0.0014582573824279985, 0.001093693036820999, 0.0007291286912139992, 0.0007291286912139992, 0.001093693036820999, 0.0007291286912139992, 0.04083120670798396, 0.6598614655486693, 0.6923076923076923, 0.7499088589135983, 0.7641268683922713, 0.7812613926358002, 0.8009478672985783, 0.8045935107546482, 0.7834487787094422, 0.7801676995989792, 0.7597520962449872, 0.7313160772876413, 0.6773605541378053, 0.5778344877870945, 0.01020780167699599, 0.012759752096244987, 0.012030623405030989, 0.014582573824279986, 0.007655851257746992, 0.008020415603353991, 0.008384979948960992, 0.00911410864017499, 0.00911410864017499, 0.01020780167699599, 0.011301494713816989, 0.011666059059423988, 0.011666059059423988, 0.012759752096244987, 0.013488880787458987, 0.016040831206707983, 0.023696682464454975, 0.026613197229310975, 0.03609187021509296, 0.8596427269413052, 0.8665694495078381, 0.8665694495078381, 0.8669340138534452, 0.8665694495078381, 0.8651111921254101, 0.8403208166241342, 0.047757929274516955, 0.05395552314983595, 0.05577834487787094, 0.06707983959168794, 0.07838133430550492, 0.10353627415238789, 0.12978490703609186, 0.16514764855997083, 0.41851986875683556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DRE2_N.gap.json b/pfam_gap_rates/DRE2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..516bf114815c1fd7bf28e969a3560587c16223ae
--- /dev/null
+++ b/pfam_gap_rates/DRE2_N.gap.json
@@ -0,0 +1 @@
+{"family": "DRE2_N", "n_seqs": 116, "length": 151, "gap_rates": [0.8103448275862069, 0.29310344827586204, 0.2672413793103448, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.2413793103448276, 0.22413793103448276, 0.22413793103448276, 0.21551724137931033, 0.21551724137931033, 0.19827586206896552, 0.19827586206896552, 0.1724137931034483, 0.15517241379310345, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.8275862068965517, 0.11206896551724138, 0.11206896551724138, 0.10344827586206896, 0.10344827586206896, 0.7155172413793104, 0.11206896551724138, 0.05172413793103448, 0.8620689655172413, 0.9310344827586207, 0.9137931034482759, 0.853448275862069, 0.034482758620689655, 0.02586206896551724, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.02586206896551724, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.45689655172413796, 0.7758620689655172, 0.9396551724137931, 0.5689655172413793, 0.4482758620689655, 0.29310344827586204, 0.29310344827586204, 0.14655172413793102, 0.1724137931034483, 0.15517241379310345, 0.06896551724137931, 0.034482758620689655, 0.04310344827586207, 0.0603448275862069, 0.41379310344827586, 0.034482758620689655, 0.034482758620689655, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.02586206896551724, 0.034482758620689655, 0.10344827586206896, 0.3017241379310345, 0.28448275862068967, 0.22413793103448276, 0.5689655172413793, 0.8103448275862069, 0.9224137931034483, 0.6982758620689655, 0.47413793103448276, 0.0603448275862069, 0.05172413793103448, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.0603448275862069, 0.08620689655172414, 0.7068965517241379, 0.6810344827586207, 0.4482758620689655, 0.14655172413793102, 0.1206896551724138, 0.11206896551724138, 0.8103448275862069, 0.8879310344827587, 0.8448275862068966, 0.7844827586206896, 0.11206896551724138, 0.1206896551724138, 0.1206896551724138, 0.1206896551724138, 0.12931034482758622, 0.14655172413793102, 0.25, 0.27586206896551724, 0.8620689655172413, 0.23275862068965517, 0.20689655172413793, 0.20689655172413793, 0.21551724137931033, 0.2413793103448276, 0.25862068965517243, 0.4051724137931034], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1054.gap.json b/pfam_gap_rates/DUF1054.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67ae480e3cdc71add37022f5d9bfdcf839774abd
--- /dev/null
+++ b/pfam_gap_rates/DUF1054.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1054", "n_seqs": 146, "length": 198, "gap_rates": [0.0821917808219178, 0.07534246575342465, 0.06164383561643835, 0.0547945205479452, 0.0410958904109589, 0.0410958904109589, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.03424657534246575, 0.02054794520547945, 0.07534246575342465, 0.0273972602739726, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.03424657534246575, 0.03424657534246575, 0.0410958904109589, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.2534246575342466, 0.08904109589041095, 0.04794520547945205, 0.04794520547945205, 0.10273972602739725, 0.0410958904109589, 0.04794520547945205, 0.0410958904109589, 0.04794520547945205, 0.04794520547945205, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.03424657534246575, 0.03424657534246575, 0.04794520547945205, 0.1643835616438356, 0.18493150684931506, 0.4520547945205479, 0.3767123287671233, 0.3561643835616438, 0.06164383561643835, 0.0410958904109589, 0.04794520547945205, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.04794520547945205, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.04794520547945205, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.04794520547945205, 0.04794520547945205, 0.04794520547945205, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.06164383561643835, 0.0684931506849315, 0.0547945205479452, 0.0684931506849315, 0.0547945205479452, 0.0821917808219178, 0.0684931506849315, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.07534246575342465], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1077.gap.json b/pfam_gap_rates/DUF1077.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d633785fe1f5c676e355143198dfe86a708cabb6
--- /dev/null
+++ b/pfam_gap_rates/DUF1077.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1077", "n_seqs": 318, "length": 126, "gap_rates": [0.8427672955974843, 0.48742138364779874, 0.27044025157232704, 0.16352201257861634, 0.12578616352201258, 0.09748427672955975, 0.07861635220125786, 0.07232704402515723, 0.0660377358490566, 0.05660377358490566, 0.050314465408805034, 0.0440251572327044, 0.0440251572327044, 0.040880503144654086, 0.040880503144654086, 0.040880503144654086, 0.03459119496855346, 0.031446540880503145, 0.031446540880503145, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.025157232704402517, 0.0220125786163522, 0.0220125786163522, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.025157232704402517, 0.018867924528301886, 0.018867924528301886, 0.0220125786163522, 0.025157232704402517, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.03459119496855346, 0.03773584905660377, 0.0440251572327044, 0.050314465408805034, 0.04716981132075472, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.1069182389937107, 0.11320754716981132, 0.9276729559748428, 0.940251572327044, 0.940251572327044, 0.9119496855345912, 0.5754716981132075, 0.46540880503144655, 0.9182389937106918, 0.9276729559748428, 0.9433962264150944, 0.9213836477987422, 0.9182389937106918, 0.25157232704402516, 0.1792452830188679, 0.059748427672955975, 0.059748427672955975, 0.059748427672955975, 0.059748427672955975, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.08490566037735849, 0.0880503144654088, 0.1069182389937107, 0.11320754716981132, 0.11006289308176101, 0.11006289308176101, 0.11320754716981132, 0.14150943396226415, 0.14779874213836477, 0.1792452830188679, 0.24528301886792453, 0.4339622641509434, 0.8710691823899371], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1150.gap.json b/pfam_gap_rates/DUF1150.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1296a9e346bc56ab90384d5ef1ebb48d624660a7
--- /dev/null
+++ b/pfam_gap_rates/DUF1150.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1150", "n_seqs": 145, "length": 76, "gap_rates": [0.7103448275862069, 0.5724137931034483, 0.5103448275862069, 0.4206896551724138, 0.3724137931034483, 0.36551724137931035, 0.3448275862068966, 0.32413793103448274, 0.2896551724137931, 0.25517241379310346, 0.19310344827586207, 0.15862068965517243, 0.14482758620689656, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.14482758620689656, 0.14482758620689656, 0.15172413793103448, 0.16551724137931034, 0.1724137931034483, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.5517241379310345, 0.5448275862068965, 0.21379310344827587, 0.21379310344827587, 0.1793103448275862, 0.15862068965517243, 0.13793103448275862, 0.08275862068965517, 0.06206896551724138, 0.05517241379310345, 0.027586206896551724, 0.027586206896551724, 0.013793103448275862, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.020689655172413793, 0.027586206896551724, 0.034482758620689655, 0.06206896551724138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1156.gap.json b/pfam_gap_rates/DUF1156.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04b23861e56f9ebf3a2f4acba21cfe884bc28374
--- /dev/null
+++ b/pfam_gap_rates/DUF1156.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1156", "n_seqs": 171, "length": 77, "gap_rates": [0.49707602339181284, 0.05263157894736842, 0.04678362573099415, 0.04678362573099415, 0.04093567251461988, 0.04093567251461988, 0.03508771929824561, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.08187134502923976, 0.04093567251461988, 0.9064327485380117, 0.6140350877192983, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.0, 0.0, 0.0, 0.9122807017543859, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005847953216374269, 0.023391812865497075, 0.029239766081871343, 0.04093567251461988, 0.3508771929824561, 0.3567251461988304, 0.3684210526315789, 0.8596491228070176, 0.8596491228070176, 0.4444444444444444, 0.5029239766081871, 0.5263157894736842, 0.5380116959064327, 0.5555555555555556, 0.5730994152046783, 0.5789473684210527, 0.39766081871345027, 0.4093567251461988, 0.4327485380116959, 0.4502923976608187, 0.4502923976608187, 0.45614035087719296, 0.4619883040935672, 0.4678362573099415, 0.4678362573099415, 0.47953216374269003, 0.47953216374269003, 0.4853801169590643, 0.5321637426900585, 0.7192982456140351], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1168.gap.json b/pfam_gap_rates/DUF1168.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37e11bd2f398faf1a79f3074fc7914ad322e0979
--- /dev/null
+++ b/pfam_gap_rates/DUF1168.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1168", "n_seqs": 283, "length": 148, "gap_rates": [0.6042402826855123, 0.4204946996466431, 0.3992932862190813, 0.392226148409894, 0.38869257950530034, 0.36042402826855124, 0.3462897526501767, 0.34275618374558303, 0.31802120141342755, 0.31448763250883394, 0.30742049469964666, 0.28975265017667845, 0.24734982332155478, 0.19434628975265017, 0.16607773851590105, 0.6996466431095406, 0.10600706713780919, 0.9081272084805654, 0.9434628975265018, 0.9045936395759717, 0.08833922261484099, 0.07773851590106007, 0.06713780918727916, 0.053003533568904596, 0.04946996466431095, 0.04946996466431095, 0.04240282685512368, 0.038869257950530034, 0.038869257950530034, 0.038869257950530034, 0.038869257950530034, 0.0353356890459364, 0.038869257950530034, 0.0353356890459364, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.028268551236749116, 0.02120141342756184, 0.02120141342756184, 0.024734982332155476, 0.024734982332155476, 0.02120141342756184, 0.02120141342756184, 0.02120141342756184, 0.02120141342756184, 0.02120141342756184, 0.014134275618374558, 0.0176678445229682, 0.0176678445229682, 0.014134275618374558, 0.014134275618374558, 0.014134275618374558, 0.014134275618374558, 0.0176678445229682, 0.0176678445229682, 0.028268551236749116, 0.028268551236749116, 0.038869257950530034, 0.045936395759717315, 0.053003533568904596, 0.06007067137809187, 0.05653710247349823, 0.05653710247349823, 0.05653710247349823, 0.05653710247349823, 0.053003533568904596, 0.05653710247349823, 0.053003533568904596, 0.053003533568904596, 0.053003533568904596, 0.053003533568904596, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.04946996466431095, 0.06007067137809187, 0.0636042402826855, 0.0636042402826855, 0.0636042402826855, 0.18021201413427562, 0.13427561837455831, 0.11307420494699646, 0.07420494699646643, 0.0706713780918728, 0.0706713780918728, 0.07420494699646643, 0.08833922261484099, 0.10954063604240283, 0.13074204946996468, 0.14487632508833923, 0.14840989399293286, 0.1519434628975265, 0.17314487632508835, 0.1872791519434629, 0.20141342756183744, 0.21908127208480566, 0.24734982332155478, 0.2579505300353357, 0.26855123674911663, 0.2862190812720848, 0.31802120141342755, 0.3392226148409894, 0.9187279151943463, 0.9222614840989399, 0.9257950530035336, 0.9363957597173145, 0.9399293286219081, 0.9363957597173145, 0.9293286219081273, 0.9222614840989399, 0.9222614840989399, 0.911660777385159, 0.4204946996466431, 0.48056537102473496, 0.4840989399293286, 0.4911660777385159, 0.49469964664310956, 0.5017667844522968, 0.5265017667844523, 0.5335689045936396, 0.5547703180212014, 0.5618374558303887, 0.5759717314487632, 0.607773851590106, 0.6643109540636042, 0.7279151943462897, 0.8162544169611308, 0.9045936395759717, 0.9469964664310954], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1194.gap.json b/pfam_gap_rates/DUF1194.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bc385749b840cb5bd2c8e1845e7322d5c761b78
--- /dev/null
+++ b/pfam_gap_rates/DUF1194.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1194", "n_seqs": 188, "length": 213, "gap_rates": [0.5212765957446809, 0.07446808510638298, 0.05851063829787234, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.047872340425531915, 0.0425531914893617, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.026595744680851064, 0.031914893617021274, 0.031914893617021274, 0.1276595744680851, 0.18617021276595744, 0.22340425531914893, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.11170212765957446, 0.11170212765957446, 0.0425531914893617, 0.047872340425531915, 0.03723404255319149, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.03723404255319149, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.026595744680851064, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.6063829787234043, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.02127659574468085, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.03723404255319149, 0.026595744680851064, 0.026595744680851064, 0.3351063829787234, 0.03723404255319149, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.031914893617021274, 0.4787234042553192, 0.05851063829787234, 0.03723404255319149, 0.0425531914893617, 0.4521276595744681, 0.06382978723404255, 0.05319148936170213, 0.0425531914893617, 0.0425531914893617, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.0425531914893617, 0.3723404255319149, 0.3670212765957447, 0.3191489361702128, 0.3191489361702128, 0.4521276595744681, 0.5531914893617021, 0.8404255319148937, 0.8670212765957447, 0.7606382978723404, 0.48936170212765956, 0.44148936170212766, 0.0797872340425532, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.0425531914893617, 0.03723404255319149, 0.03723404255319149, 0.0851063829787234, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.047872340425531915, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.06914893617021277, 0.19148936170212766, 0.776595744680851], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1214.gap.json b/pfam_gap_rates/DUF1214.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cfbc4c8739b361a2868cb4499e2a90c9c22cc1e
--- /dev/null
+++ b/pfam_gap_rates/DUF1214.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1214", "n_seqs": 600, "length": 120, "gap_rates": [0.655, 0.48333333333333334, 0.37833333333333335, 0.3466666666666667, 0.335, 0.3283333333333333, 0.3233333333333333, 0.33166666666666667, 0.315, 0.31333333333333335, 0.305, 0.3, 0.29, 0.2816666666666667, 0.25166666666666665, 0.215, 0.19333333333333333, 0.18333333333333332, 0.18, 0.17833333333333334, 0.16333333333333333, 0.9133333333333333, 0.15333333333333332, 0.14166666666666666, 0.13166666666666665, 0.115, 0.10833333333333334, 0.1, 0.13166666666666665, 0.16833333333333333, 0.6766666666666666, 0.3983333333333333, 0.19833333333333333, 0.49, 0.9166666666666666, 0.895, 0.07666666666666666, 0.06333333333333334, 0.06333333333333334, 0.056666666666666664, 0.06, 0.056666666666666664, 0.055, 0.056666666666666664, 0.051666666666666666, 0.05, 0.13666666666666666, 0.4033333333333333, 0.10833333333333334, 0.10166666666666667, 0.20166666666666666, 0.935, 0.065, 0.06833333333333333, 0.051666666666666666, 0.04666666666666667, 0.043333333333333335, 0.04, 0.09, 0.08166666666666667, 0.06666666666666667, 0.93, 0.03666666666666667, 0.02666666666666667, 0.023333333333333334, 0.016666666666666666, 0.018333333333333333, 0.018333333333333333, 0.03166666666666667, 0.9183333333333333, 0.6633333333333333, 0.08333333333333333, 0.25333333333333335, 0.01, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.01, 0.925, 0.44666666666666666, 0.43333333333333335, 0.3933333333333333, 0.056666666666666664, 0.15833333333333333, 0.15166666666666667, 0.011666666666666667, 0.01, 0.011666666666666667, 0.011666666666666667, 0.011666666666666667, 0.013333333333333334, 0.013333333333333334, 0.48, 0.9333333333333333, 0.11, 0.021666666666666667, 0.03166666666666667, 0.03166666666666667, 0.035, 0.03833333333333333, 0.03833333333333333, 0.045, 0.08666666666666667, 0.105, 0.14, 0.17166666666666666, 0.2916666666666667, 0.7866666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1223.gap.json b/pfam_gap_rates/DUF1223.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f0122a5990ad78ffffe49fd21be915dad3c9d72
--- /dev/null
+++ b/pfam_gap_rates/DUF1223.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF126.gap.json b/pfam_gap_rates/DUF126.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61a29f63d6cb1cb57044b7d26d16525142a9951f
--- /dev/null
+++ b/pfam_gap_rates/DUF126.gap.json
@@ -0,0 +1 @@
+{"family": "DUF126", "n_seqs": 218, "length": 89, "gap_rates": [0.3348623853211009, 0.3119266055045872, 0.2981651376146789, 0.28440366972477066, 0.1834862385321101, 0.1559633027522936, 0.1559633027522936, 0.15137614678899083, 0.16972477064220184, 0.13761467889908258, 0.12844036697247707, 0.12385321100917432, 0.12385321100917432, 0.11009174311926606, 0.10550458715596331, 0.05045871559633028, 0.08256880733944955, 0.06422018348623854, 0.05504587155963303, 0.045871559633027525, 0.045871559633027525, 0.04128440366972477, 0.013761467889908258, 0.013761467889908258, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8577981651376146, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045871559633027525, 0.009174311926605505, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.908256880733945, 0.009174311926605505, 0.9495412844036697, 0.009174311926605505, 0.009174311926605505, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.7752293577981652, 0.7752293577981652, 0.7844036697247706, 0.7752293577981652, 0.7752293577981652, 0.7752293577981652, 0.06422018348623854, 0.16972477064220184, 0.2706422018348624, 0.30275229357798167, 0.5091743119266054], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1285.gap.json b/pfam_gap_rates/DUF1285.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..502fc9566bd8e71b70d61e5c0485cb5f8e52ef08
--- /dev/null
+++ b/pfam_gap_rates/DUF1285.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1285", "n_seqs": 265, "length": 152, "gap_rates": [0.12830188679245283, 0.06792452830188679, 0.01509433962264151, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.011320754716981131, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.4716981132075472, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.007547169811320755, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.007547169811320755, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.9471698113207547, 0.2830188679245283, 0.2641509433962264, 0.2490566037735849, 0.23018867924528302, 0.033962264150943396, 0.03018867924528302, 0.018867924528301886, 0.01509433962264151, 0.01509433962264151, 0.01509433962264151, 0.01509433962264151, 0.03018867924528302, 0.018867924528301886, 0.022641509433962263, 0.022641509433962263, 0.022641509433962263, 0.026415094339622643, 0.026415094339622643, 0.03018867924528302, 0.026415094339622643, 0.03018867924528302, 0.06037735849056604, 0.026415094339622643, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.0830188679245283, 0.1471698113207547, 0.15471698113207547, 0.3886792452830189, 0.2830188679245283, 0.1320754716981132, 0.06415094339622641, 0.03018867924528302, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.939622641509434, 0.939622641509434, 0.939622641509434, 0.8754716981132076, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.026415094339622643, 0.03018867924528302, 0.1320754716981132, 0.19245283018867926, 0.3849056603773585, 0.9245283018867925, 0.2830188679245283, 0.2528301886792453, 0.22264150943396227, 0.12075471698113208, 0.12075471698113208, 0.12452830188679245, 0.12830188679245283, 0.14339622641509434, 0.15471698113207547, 0.1509433962264151, 0.16226415094339622, 0.16981132075471697, 0.20754716981132076, 0.23018867924528302, 0.2528301886792453], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1295.gap.json b/pfam_gap_rates/DUF1295.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b4e34941126f9e951d4c7dd452513fc9bb76a3a
--- /dev/null
+++ b/pfam_gap_rates/DUF1295.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1295", "n_seqs": 973, "length": 291, "gap_rates": [0.7009249743062693, 0.4522096608427544, 0.41007194244604317, 0.37923946557040084, 0.36279547790339156, 0.35046248715313466, 0.3371017471736896, 0.32579650565262075, 0.3175745118191161, 0.31449126413155193, 0.3103802672147996, 0.3062692702980473, 0.3011305241521069, 0.3001027749229188, 0.2970195272353546, 0.2959917780061665, 0.2918807810894142, 0.28879753340184994, 0.2857142857142857, 0.2846865364850976, 0.28263103802672146, 0.27852004110996914, 0.27543679342240496, 0.27543679342240496, 0.27543679342240496, 0.2723535457348407, 0.27029804727646456, 0.26618705035971224, 0.2641315519013361, 0.2682425488180884, 0.2682425488180884, 0.2959917780061665, 0.7142857142857143, 0.8766700924974307, 0.9218910585817061, 0.9403905447070915, 0.94655704008222, 0.9424460431654677, 0.935251798561151, 0.9075025693730729, 0.8314491264131552, 0.6813977389516958, 0.2569373072970195, 0.2538540596094553, 0.2312435765673176, 0.8725590955806783, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1302.gap.json b/pfam_gap_rates/DUF1302.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61bac56a73415ee38269dbc2660777e4c6207b60
--- /dev/null
+++ b/pfam_gap_rates/DUF1302.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1361.gap.json b/pfam_gap_rates/DUF1361.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..076bac21e205270ca7c1ecdb800992ed2d65df67
--- /dev/null
+++ b/pfam_gap_rates/DUF1361.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1361", "n_seqs": 176, "length": 193, "gap_rates": [0.1875, 0.09659090909090909, 0.09659090909090909, 0.08522727272727272, 0.07386363636363637, 0.06818181818181818, 0.0625, 0.056818181818181816, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.045454545454545456, 0.045454545454545456, 0.03977272727272727, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03977272727272727, 0.0625, 0.14772727272727273, 0.35795454545454547, 0.4943181818181818, 0.7556818181818182, 0.3806818181818182, 0.17613636363636365, 0.11363636363636363, 0.03977272727272727, 0.8125, 0.9090909090909091, 0.9488636363636364, 0.9318181818181818, 0.8579545454545454, 0.7613636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.056818181818181816, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.7159090909090909, 0.3125, 0.32386363636363635, 0.30113636363636365, 0.6363636363636364, 0.6931818181818182, 0.9034090909090909, 0.9488636363636364, 0.9261363636363636, 0.8295454545454546, 0.6420454545454546, 0.625, 0.05113636363636364, 0.14204545454545456, 0.11363636363636363, 0.17045454545454544, 0.9318181818181818, 0.36363636363636365, 0.6590909090909091, 0.23295454545454544, 0.18181818181818182, 0.1590909090909091, 0.13636363636363635, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.022727272727272728, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.48863636363636365, 0.4943181818181818, 0.05113636363636364, 0.056818181818181816, 0.05113636363636364, 0.5113636363636364, 0.9375, 0.6931818181818182, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.03977272727272727, 0.10227272727272728, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.7556818181818182, 0.7670454545454546, 0.7727272727272727, 0.7556818181818182, 0.6363636363636364, 0.022727272727272728, 0.03977272727272727, 0.056818181818181816, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.056818181818181816, 0.06818181818181818, 0.07386363636363637, 0.08522727272727272, 0.10227272727272728, 0.1590909090909091, 0.2215909090909091, 0.36363636363636365, 0.9318181818181818], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1491.gap.json b/pfam_gap_rates/DUF1491.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb3416045264d1676276d262a7c2c2f399c45c35
--- /dev/null
+++ b/pfam_gap_rates/DUF1491.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1491", "n_seqs": 176, "length": 113, "gap_rates": [0.11931818181818182, 0.0625, 0.056818181818181816, 0.056818181818181816, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.045454545454545456, 0.03977272727272727, 0.03977272727272727, 0.028409090909090908, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.017045454545454544, 0.03977272727272727, 0.011363636363636364, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.6988636363636364, 0.7159090909090909, 0.8068181818181818, 0.9375, 0.9147727272727273, 0.7727272727272727, 0.7045454545454546, 0.6988636363636364, 0.005681818181818182, 0.10795454545454546, 0.09090909090909091, 0.7215909090909091, 0.09090909090909091, 0.045454545454545456, 0.03977272727272727, 0.03977272727272727, 0.022727272727272728, 0.005681818181818182, 0.022727272727272728, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.7272727272727273, 0.6193181818181818, 0.4431818181818182, 0.4147727272727273, 0.022727272727272728, 0.06818181818181818, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.022727272727272728, 0.05113636363636364, 0.06818181818181818, 0.09090909090909091, 0.1534090909090909, 0.17613636363636365, 0.30113636363636365, 0.5965909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1499.gap.json b/pfam_gap_rates/DUF1499.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e38b198b225ae9e781e9bd15bb3bdc56a5c9001a
--- /dev/null
+++ b/pfam_gap_rates/DUF1499.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1499", "n_seqs": 498, "length": 163, "gap_rates": [0.8192771084337349, 0.4578313253012048, 0.39759036144578314, 0.357429718875502, 0.3413654618473896, 0.3273092369477912, 0.3132530120481928, 0.2891566265060241, 0.26907630522088355, 0.26104417670682734, 0.2570281124497992, 0.2570281124497992, 0.2570281124497992, 0.24899598393574296, 0.321285140562249, 0.25502008032128515, 0.5301204819277109, 0.4598393574297189, 0.8955823293172691, 0.9357429718875502, 0.8473895582329317, 0.3072289156626506, 0.19678714859437751, 0.8012048192771084, 0.8012048192771084, 0.8052208835341366, 0.8092369477911646, 0.8192771084337349, 0.8192771084337349, 0.8293172690763052, 0.8293172690763052, 0.8473895582329317, 0.8855421686746988, 0.9216867469879518, 0.857429718875502, 0.8393574297188755, 0.8293172690763052, 0.8232931726907631, 0.8192771084337349, 0.8172690763052208, 0.8092369477911646, 0.8052208835341366, 0.8012048192771084, 0.7991967871485943, 0.18072289156626506, 0.1706827309236948, 0.1606425702811245, 0.9036144578313253, 0.6907630522088354, 0.14457831325301204, 0.13654618473895583, 0.13453815261044177, 0.13052208835341367, 0.12248995983935743, 0.10642570281124498, 0.8353413654618473, 0.8955823293172691, 0.9136546184738956, 0.9377510040160643, 0.9236947791164659, 0.9116465863453815, 0.8755020080321285, 0.7751004016064257, 0.11847389558232932, 0.11244979919678715, 0.08433734939759036, 0.08433734939759036, 0.07630522088353414, 0.06827309236947791, 0.07228915662650602, 0.20682730923694778, 0.06224899598393574, 0.06224899598393574, 0.05622489959839357, 0.05421686746987952, 0.050200803212851405, 0.050200803212851405, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.8634538152610441, 0.5200803212851406, 0.5060240963855421, 0.5200803212851406, 0.5020080321285141, 0.8634538152610441, 0.9337349397590361, 0.7008032128514057, 0.08835341365461848, 0.3473895582329317, 0.4919678714859438, 0.857429718875502, 0.9216867469879518, 0.9056224899598394, 0.7951807228915663, 0.39357429718875503, 0.26305220883534136, 0.04417670682730924, 0.030120481927710843, 0.028112449799196786, 0.020080321285140562, 0.8192771084337349, 0.010040160642570281, 0.010040160642570281, 0.010040160642570281, 0.010040160642570281, 0.008032128514056224, 0.006024096385542169, 0.008032128514056224, 0.008032128514056224, 0.006024096385542169, 0.008032128514056224, 0.03614457831325301, 0.012048192771084338, 0.020080321285140562, 0.020080321285140562, 0.01606425702811245, 0.012048192771084338, 0.006024096385542169, 0.010040160642570281, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.006024096385542169, 0.008032128514056224, 0.010040160642570281, 0.012048192771084338, 0.10441767068273092, 0.10843373493975904, 0.03614457831325301, 0.8554216867469879, 0.5863453815261044, 0.4919678714859438, 0.02610441767068273, 0.012048192771084338, 0.008032128514056224, 0.006024096385542169, 0.006024096385542169, 0.008032128514056224, 0.012048192771084338, 0.010040160642570281, 0.008032128514056224, 0.008032128514056224, 0.010040160642570281, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.018072289156626505, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.018072289156626505, 0.02208835341365462, 0.02208835341365462, 0.02208835341365462, 0.024096385542168676, 0.03413654618473896, 0.03614457831325301, 0.0642570281124498, 0.10040160642570281, 0.2751004016064257, 0.43172690763052207], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1540.gap.json b/pfam_gap_rates/DUF1540.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0634be8233b6404684eb2825009a4f92e541af5
--- /dev/null
+++ b/pfam_gap_rates/DUF1540.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1540", "n_seqs": 742, "length": 63, "gap_rates": [0.3638814016172507, 0.1711590296495957, 0.014824797843665768, 0.014824797843665768, 0.01078167115902965, 0.009433962264150943, 0.005390835579514825, 0.005390835579514825, 0.005390835579514825, 0.0026954177897574125, 0.0026954177897574125, 0.0026954177897574125, 0.871967654986523, 0.6172506738544474, 0.0444743935309973, 0.0026954177897574125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6711590296495957, 0.6778975741239892, 0.6819407008086253, 0.6738544474393531, 0.894878706199461, 0.9083557951482479, 0.9097035040431267, 0.9110512129380054, 0.9150943396226415, 0.9191374663072777, 0.921832884097035, 0.9474393530997305, 0.9326145552560647, 0.9191374663072777, 0.9177897574123989, 0.9123989218328841, 0.9097035040431267, 0.9097035040431267, 0.898921832884097, 0.8840970350404312, 0.578167115902965, 0.7277628032345014, 0.3194070080862534, 0.22506738544474394, 0.21428571428571427, 0.2574123989218329, 0.24393530997304583, 0.22911051212938005, 0.20485175202156333, 0.0862533692722372, 0.07008086253369272, 0.0673854447439353, 0.0646900269541779, 0.0660377358490566, 0.07008086253369272, 0.08355795148247978, 0.09703504043126684, 0.12398921832884097], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1565.gap.json b/pfam_gap_rates/DUF1565.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c06bf9fba3e6c0a7cac6c410a5a2e4205c56e234
--- /dev/null
+++ b/pfam_gap_rates/DUF1565.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1569.gap.json b/pfam_gap_rates/DUF1569.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91183944529f6604fe8a8f89fcfcb9f70bb31f3a
--- /dev/null
+++ b/pfam_gap_rates/DUF1569.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1569", "n_seqs": 107, "length": 164, "gap_rates": [0.9439252336448598, 0.8785046728971962, 0.8130841121495327, 0.8037383177570093, 0.7663551401869159, 0.7570093457943925, 0.7383177570093458, 0.7009345794392523, 0.6915887850467289, 0.5981308411214953, 0.514018691588785, 0.45794392523364486, 0.27102803738317754, 0.21495327102803738, 0.17757009345794392, 0.1308411214953271, 0.11214953271028037, 0.102803738317757, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.09345794392523364, 0.08411214953271028, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.07476635514018691, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.07476635514018691, 0.06542056074766354, 0.06542056074766354, 0.09345794392523364, 0.08411214953271028, 0.9158878504672897, 0.09345794392523364, 0.08411214953271028, 0.17757009345794392, 0.06542056074766354, 0.08411214953271028, 0.102803738317757, 0.102803738317757, 0.12149532710280374, 0.3177570093457944, 0.14018691588785046, 0.07476635514018691, 0.16822429906542055, 0.9065420560747663, 0.897196261682243, 0.11214953271028037, 0.11214953271028037, 0.11214953271028037, 0.056074766355140186, 0.04672897196261682, 0.06542056074766354, 0.04672897196261682, 0.06542056074766354, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.06542056074766354, 0.056074766355140186, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.38317757009345793, 0.45794392523364486, 0.9252336448598131, 0.897196261682243, 0.12149532710280374, 0.102803738317757, 0.07476635514018691, 0.11214953271028037, 0.037383177570093455, 0.04672897196261682, 0.037383177570093455, 0.037383177570093455, 0.04672897196261682, 0.14953271028037382, 0.056074766355140186, 0.04672897196261682, 0.028037383177570093, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.04672897196261682, 0.037383177570093455, 0.028037383177570093, 0.028037383177570093, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.018691588785046728, 0.037383177570093455, 0.8504672897196262, 0.8878504672897196, 0.822429906542056, 0.028037383177570093, 0.028037383177570093, 0.009345794392523364, 0.018691588785046728, 0.9065420560747663, 0.9252336448598131, 0.9065420560747663, 0.009345794392523364, 0.0, 0.009345794392523364, 0.9345794392523364, 0.897196261682243, 0.018691588785046728, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.018691588785046728, 0.037383177570093455, 0.6728971962616822, 0.8130841121495327], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1636.gap.json b/pfam_gap_rates/DUF1636.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c77311fa6ec19a7b3c62f9357244581b41906ae
--- /dev/null
+++ b/pfam_gap_rates/DUF1636.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1636", "n_seqs": 172, "length": 123, "gap_rates": [0.12790697674418605, 0.11046511627906977, 0.10465116279069768, 0.10465116279069768, 0.09883720930232558, 0.09883720930232558, 0.09883720930232558, 0.09883720930232558, 0.09883720930232558, 0.09883720930232558, 0.09883720930232558, 0.10465116279069768, 0.10465116279069768, 0.8604651162790697, 0.5, 0.3488372093023256, 0.23255813953488372, 0.19186046511627908, 0.1686046511627907, 0.11627906976744186, 0.0872093023255814, 0.0872093023255814, 0.08139534883720931, 0.08139534883720931, 0.08139534883720931, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.08139534883720931, 0.3546511627906977, 0.47093023255813954, 0.5058139534883721, 0.5465116279069767, 0.9476744186046512, 0.9302325581395349, 0.11627906976744186, 0.05232558139534884, 0.040697674418604654, 0.023255813953488372, 0.011627906976744186, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.9127906976744186, 0.9302325581395349, 0.6744186046511628, 0.21511627906976744, 0.023255813953488372, 0.023255813953488372, 0.01744186046511628, 0.01744186046511628, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.040697674418604654, 0.040697674418604654, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.040697674418604654, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.06976744186046512, 0.1511627906976744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1653.gap.json b/pfam_gap_rates/DUF1653.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51d250bc1bfdc05153c8d7cd571ea1e6738fbe4f
--- /dev/null
+++ b/pfam_gap_rates/DUF1653.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1688.gap.json b/pfam_gap_rates/DUF1688.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04daa9566d3acaafdcb861768e680af945e8b146
--- /dev/null
+++ b/pfam_gap_rates/DUF1688.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1690.gap.json b/pfam_gap_rates/DUF1690.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..94d885155126968bfada7caeac5f1ac8321c4e71
--- /dev/null
+++ b/pfam_gap_rates/DUF1690.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1775.gap.json b/pfam_gap_rates/DUF1775.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f07ec970d2df77000f9ef7bf020ae53bd41641bd
--- /dev/null
+++ b/pfam_gap_rates/DUF1775.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1775", "n_seqs": 269, "length": 157, "gap_rates": [0.08550185873605948, 0.07434944237918216, 0.07063197026022305, 0.07063197026022305, 0.06691449814126393, 0.06319702602230483, 0.05947955390334572, 0.05947955390334572, 0.05947955390334572, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.06691449814126393, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.05204460966542751, 0.06319702602230483, 0.18587360594795538, 0.055762081784386616, 0.05204460966542751, 0.05204460966542751, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.11152416356877323, 0.7211895910780669, 0.6988847583643123, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.048327137546468404, 0.048327137546468404, 0.05204460966542751, 0.05947955390334572, 0.06319702602230483, 0.137546468401487, 0.4200743494423792, 0.4200743494423792, 0.42379182156133827, 0.42379182156133827, 0.42379182156133827, 0.4200743494423792, 0.41263940520446096, 0.379182156133829, 0.7434944237918215, 0.3643122676579926, 0.35315985130111527, 0.5130111524163569, 0.29739776951672864, 0.20446096654275092, 0.137546468401487, 0.09293680297397769, 0.08178438661710037, 0.07434944237918216, 0.055762081784386616, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.03717472118959108, 0.03717472118959108, 0.07806691449814127, 0.40892193308550184, 0.7174721189591078, 0.9107806691449815, 0.5204460966542751, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.6245353159851301, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.8884758364312267, 0.724907063197026, 0.19330855018587362, 0.17472118959107807, 0.4349442379182156, 0.022304832713754646, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01858736059479554, 0.01858736059479554, 0.3643122676579926, 0.022304832713754646, 0.022304832713754646, 0.022304832713754646, 0.022304832713754646, 0.026022304832713755, 0.02973977695167286, 0.03345724907063197, 0.6022304832713755, 0.5985130111524164, 0.5576208178438662, 0.27137546468401486, 0.5762081784386617, 0.275092936802974, 0.26765799256505574, 0.24907063197026022, 0.22676579925650558, 0.23048327137546468, 0.23048327137546468, 0.23048327137546468, 0.2342007434944238, 0.2342007434944238, 0.2379182156133829, 0.241635687732342, 0.25650557620817843, 0.275092936802974, 0.3420074349442379], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF188.gap.json b/pfam_gap_rates/DUF188.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f119ec39be2a3e091788956f1b1eda2984e1a209
--- /dev/null
+++ b/pfam_gap_rates/DUF188.gap.json
@@ -0,0 +1 @@
+{"family": "DUF188", "n_seqs": 727, "length": 135, "gap_rates": [0.5639614855570839, 0.13892709766162312, 0.07015130674002751, 0.052269601100412656, 0.04264099037138927, 0.039889958734525444, 0.039889958734525444, 0.037138927097661624, 0.03576341127922971, 0.033012379642365884, 0.03163686382393398, 0.030261348005502064, 0.030261348005502064, 0.030261348005502064, 0.027510316368638238, 0.027510316368638238, 0.026134800550206328, 0.026134800550206328, 0.026134800550206328, 0.026134800550206328, 0.026134800550206328, 0.024759284731774415, 0.024759284731774415, 0.023383768913342505, 0.024759284731774415, 0.26822558459422285, 0.9491059147180193, 0.9270976616231087, 0.06740027510316368, 0.0577716643741403, 0.017881705639614855, 0.012379642365887207, 0.012379642365887207, 0.012379642365887207, 0.012379642365887207, 0.013755158184319119, 0.013755158184319119, 0.011004126547455296, 0.011004126547455296, 0.009628610729023384, 0.009628610729023384, 0.009628610729023384, 0.008253094910591471, 0.008253094910591471, 0.0068775790921595595, 0.0068775790921595595, 0.0068775790921595595, 0.008253094910591471, 0.008253094910591471, 0.008253094910591471, 0.009628610729023384, 0.008253094910591471, 0.008253094910591471, 0.008253094910591471, 0.008253094910591471, 0.008253094910591471, 0.008253094910591471, 0.0068775790921595595, 0.0068775790921595595, 0.0068775790921595595, 0.0068775790921595595, 0.0068775790921595595, 0.0068775790921595595, 0.005502063273727648, 0.005502063273727648, 0.005502063273727648, 0.005502063273727648, 0.005502063273727648, 0.005502063273727648, 0.0068775790921595595, 0.008253094910591471, 0.013755158184319119, 0.0068775790921595595, 0.0068775790921595595, 0.0068775790921595595, 0.0068775790921595595, 0.0068775790921595595, 0.009628610729023384, 0.009628610729023384, 0.008253094910591471, 0.008253094910591471, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.015130674002751032, 0.015130674002751032, 0.015130674002751032, 0.015130674002751032, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.015130674002751032, 0.015130674002751032, 0.015130674002751032, 0.015130674002751032, 0.015130674002751032, 0.015130674002751032, 0.015130674002751032, 0.9312242090784044, 0.023383768913342505, 0.9270976616231087, 0.9092159559834938, 0.016506189821182942, 0.016506189821182942, 0.01925722145804677, 0.017881705639614855, 0.017881705639614855, 0.01925722145804677, 0.017881705639614855, 0.017881705639614855, 0.017881705639614855, 0.01925722145804677, 0.017881705639614855, 0.01925722145804677, 0.01925722145804677, 0.01925722145804677, 0.01925722145804677, 0.02063273727647868, 0.02063273727647868, 0.02063273727647868, 0.02063273727647868, 0.02200825309491059, 0.02200825309491059, 0.023383768913342505, 0.0343878954607978, 0.27097661623108665, 0.9174690508940853], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1905.gap.json b/pfam_gap_rates/DUF1905.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20e426993ecef4e695a483b8bfb9171fe904336e
--- /dev/null
+++ b/pfam_gap_rates/DUF1905.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1905", "n_seqs": 370, "length": 98, "gap_rates": [0.327027027027027, 0.2810810810810811, 0.25405405405405407, 0.22432432432432434, 0.1783783783783784, 0.16486486486486487, 0.15675675675675677, 0.14054054054054055, 0.12432432432432433, 0.11891891891891893, 0.13243243243243244, 0.8540540540540541, 0.9135135135135135, 0.8054054054054054, 0.4, 0.1972972972972973, 0.12162162162162163, 0.032432432432432434, 0.024324324324324326, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.016216216216216217, 0.1, 0.03783783783783784, 0.043243243243243246, 0.6702702702702703, 0.7, 0.772972972972973, 0.7081081081081081, 0.672972972972973, 0.6702702702702703, 0.6027027027027027, 0.5297297297297298, 0.1864864864864865, 0.021621621621621623, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.005405405405405406, 0.005405405405405406, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.0, 0.0, 0.0, 0.8432432432432433, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008108108108108109, 0.0, 0.3216216216216216, 0.9162162162162162, 0.9216216216216216, 0.9216216216216216, 0.9216216216216216, 0.918918918918919, 0.7567567567567568, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.002702702702702703, 0.005405405405405406, 0.010810810810810811, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.010810810810810811, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.021621621621621623, 0.024324324324324326, 0.02702702702702703, 0.02702702702702703, 0.032432432432432434, 0.032432432432432434, 0.043243243243243246, 0.05675675675675676, 0.15675675675675677, 0.2972972972972973], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1929.gap.json b/pfam_gap_rates/DUF1929.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..927f2293bd364470bc60462e69fe811cfa576046
--- /dev/null
+++ b/pfam_gap_rates/DUF1929.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1929", "n_seqs": 687, "length": 119, "gap_rates": [0.18340611353711792, 0.13537117903930132, 0.12518195050946143, 0.11935953420669577, 0.1091703056768559, 0.10771470160116449, 0.09461426491994178, 0.7816593886462883, 0.0858806404657933, 0.0858806404657933, 0.06404657933042213, 0.9184861717612809, 0.8457059679767104, 0.049490538573508006, 0.046579330422125184, 0.040756914119359534, 0.040756914119359534, 0.8151382823871907, 0.036390101892285295, 0.033478893740902474, 0.03202328966521106, 0.03056768558951965, 0.03056768558951965, 0.03202328966521106, 0.06986899563318777, 0.07278020378457059, 0.26346433770014555, 0.47016011644832606, 0.7176128093158661, 0.8224163027656477, 0.9126637554585153, 0.8486171761280932, 0.7991266375545851, 0.5924308588064047, 0.29839883551673946, 0.21397379912663755, 0.049490538573508006, 0.06841339155749636, 0.027656477438136828, 0.023289665211062592, 0.01455604075691412, 0.8151382823871907, 0.011644832605531296, 0.011644832605531296, 0.011644832605531296, 0.010189228529839884, 0.010189228529839884, 0.010189228529839884, 0.010189228529839884, 0.011644832605531296, 0.011644832605531296, 0.011644832605531296, 0.011644832605531296, 0.011644832605531296, 0.010189228529839884, 0.008733624454148471, 0.008733624454148471, 0.00727802037845706, 0.005822416302765648, 0.005822416302765648, 0.005822416302765648, 0.005822416302765648, 0.00727802037845706, 0.00727802037845706, 0.00727802037845706, 0.005822416302765648, 0.023289665211062592, 0.03202328966521106, 0.35807860262008734, 0.519650655021834, 0.6404657933042213, 0.9359534206695779, 0.8151382823871907, 0.5458515283842795, 0.4847161572052402, 0.22998544395924309, 0.027656477438136828, 0.013100436681222707, 0.005822416302765648, 0.043668122270742356, 0.9388646288209607, 0.9388646288209607, 0.026200873362445413, 0.023289665211062592, 0.018922852983988356, 0.0858806404657933, 0.00727802037845706, 0.005822416302765648, 0.00727802037845706, 0.00727802037845706, 0.00727802037845706, 0.00727802037845706, 0.00727802037845706, 0.011644832605531296, 0.011644832605531296, 0.013100436681222707, 0.011644832605531296, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.01455604075691412, 0.01455604075691412, 0.01455604075691412, 0.01455604075691412, 0.01455604075691412, 0.01455604075691412, 0.7641921397379913, 0.01455604075691412, 0.01455604075691412, 0.01601164483260553, 0.01601164483260553, 0.017467248908296942, 0.020378457059679767, 0.026200873362445413, 0.02911208151382824, 0.05240174672489083, 0.07132459970887918, 0.12518195050946143, 0.38427947598253276], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1935.gap.json b/pfam_gap_rates/DUF1935.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d8243f526ef0c6b47c725258cb3d6ea55cf3aa9
--- /dev/null
+++ b/pfam_gap_rates/DUF1935.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1935", "n_seqs": 218, "length": 113, "gap_rates": [0.6284403669724771, 0.45871559633027525, 0.3302752293577982, 0.3073394495412844, 0.25688073394495414, 0.944954128440367, 0.944954128440367, 0.1834862385321101, 0.13761467889908258, 0.12385321100917432, 0.43119266055045874, 0.11926605504587157, 0.11467889908256881, 0.11467889908256881, 0.10091743119266056, 0.10091743119266056, 0.10091743119266056, 0.10091743119266056, 0.13761467889908258, 0.6100917431192661, 0.5504587155963303, 0.4541284403669725, 0.0963302752293578, 0.05504587155963303, 0.05045871559633028, 0.05045871559633028, 0.05963302752293578, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.05045871559633028, 0.05963302752293578, 0.29357798165137616, 0.12385321100917432, 0.05045871559633028, 0.04128440366972477, 0.03669724770642202, 0.03669724770642202, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.04128440366972477, 0.03669724770642202, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.01834862385321101, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.01834862385321101, 0.01834862385321101, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.01834862385321101, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.8990825688073395, 0.944954128440367, 0.9495412844036697, 0.9220183486238532, 0.8807339449541285, 0.04128440366972477, 0.16972477064220184, 0.25688073394495414, 0.8761467889908257, 0.944954128440367, 0.9403669724770642, 0.7798165137614679, 0.3073394495412844, 0.03669724770642202, 0.027522935779816515, 0.03211009174311927, 0.027522935779816515, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.03669724770642202, 0.03211009174311927, 0.05963302752293578, 0.0871559633027523, 0.09174311926605505, 0.09174311926605505, 0.0963302752293578, 0.0963302752293578, 0.10550458715596331, 0.11009174311926606, 0.11926605504587157, 0.12844036697247707, 0.1743119266055046, 0.22018348623853212, 0.2981651376146789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1963.gap.json b/pfam_gap_rates/DUF1963.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc303e66e0b6eeccca76498e0a98bfa70de1f60c
--- /dev/null
+++ b/pfam_gap_rates/DUF1963.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF1989.gap.json b/pfam_gap_rates/DUF1989.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9af02c4cbc0cc98c49db50ea8417a37aeb718ad1
--- /dev/null
+++ b/pfam_gap_rates/DUF1989.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2009.gap.json b/pfam_gap_rates/DUF2009.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c34e55a93e9d035ff09be4daa86db82077e8033
--- /dev/null
+++ b/pfam_gap_rates/DUF2009.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2189.gap.json b/pfam_gap_rates/DUF2189.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c3afe3419e907ba2abc8d63afa96cc636570b1e
--- /dev/null
+++ b/pfam_gap_rates/DUF2189.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF222.gap.json b/pfam_gap_rates/DUF222.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f706ca0c573d451c21ed81a51e4a582f9e31f3de
--- /dev/null
+++ b/pfam_gap_rates/DUF222.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2222.gap.json b/pfam_gap_rates/DUF2222.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae56c2bd7513cac234c4d532cc9c1ee7784b75b6
--- /dev/null
+++ b/pfam_gap_rates/DUF2222.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2222", "n_seqs": 120, "length": 156, "gap_rates": [0.8166666666666667, 0.525, 0.4166666666666667, 0.38333333333333336, 0.25, 0.175, 0.125, 0.1, 0.075, 0.058333333333333334, 0.05, 0.05, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.025, 0.025, 0.025, 0.03333333333333333, 0.016666666666666666, 0.016666666666666666, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.03333333333333333, 0.025, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.6083333333333333, 0.6083333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.95, 0.95, 0.95, 0.008333333333333333, 0.45, 0.4, 0.3, 0.2, 0.16666666666666666, 0.08333333333333333, 0.075, 0.075, 0.09166666666666666, 0.06666666666666667, 0.075, 0.08333333333333333, 0.09166666666666666, 0.08333333333333333, 0.1, 0.1, 0.1, 0.10833333333333334, 0.19166666666666668, 0.16666666666666666, 0.14166666666666666, 0.13333333333333333, 0.13333333333333333, 0.125, 0.125, 0.10833333333333334, 0.10833333333333334, 0.11666666666666667, 0.11666666666666667, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.11666666666666667, 0.16666666666666666, 0.15833333333333333, 0.16666666666666666, 0.2, 0.7583333333333333, 0.85, 0.925, 0.8, 0.675, 0.5666666666666667, 0.5333333333333333, 0.475, 0.2916666666666667, 0.20833333333333334, 0.175, 0.15833333333333333, 0.14166666666666666, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.14166666666666666, 0.15, 0.20833333333333334, 0.2833333333333333, 0.3, 0.31666666666666665, 0.35833333333333334, 0.35833333333333334, 0.525, 0.7583333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2249.gap.json b/pfam_gap_rates/DUF2249.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f3e449cef34a23bb675b1b1a8b4757fccd11001
--- /dev/null
+++ b/pfam_gap_rates/DUF2249.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2249", "n_seqs": 399, "length": 72, "gap_rates": [0.5112781954887218, 0.06265664160401002, 0.045112781954887216, 0.042606516290726815, 0.040100250626566414, 0.03258145363408521, 0.040100250626566414, 0.8471177944862155, 0.8471177944862155, 0.05263157894736842, 0.022556390977443608, 0.022556390977443608, 0.017543859649122806, 0.017543859649122806, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.012531328320802004, 0.007518796992481203, 0.005012531328320802, 0.005012531328320802, 0.005012531328320802, 0.005012531328320802, 0.005012531328320802, 0.002506265664160401, 0.002506265664160401, 0.007518796992481203, 0.002506265664160401, 0.002506265664160401, 0.002506265664160401, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002506265664160401, 0.002506265664160401, 0.002506265664160401, 0.47117794486215536, 0.46365914786967416, 0.005012531328320802, 0.002506265664160401, 0.43358395989974935, 0.010025062656641603, 0.007518796992481203, 0.015037593984962405, 0.017543859649122806, 0.020050125313283207, 0.02506265664160401, 0.02756892230576441, 0.02756892230576441, 0.03258145363408521, 0.05764411027568922, 0.06766917293233082, 0.05764411027568922, 0.07017543859649122, 0.07268170426065163, 0.07769423558897243, 0.09022556390977443, 0.18546365914786966, 0.3634085213032581], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2267.gap.json b/pfam_gap_rates/DUF2267.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb40d9528b28b974db310b842222d6a7d71336d5
--- /dev/null
+++ b/pfam_gap_rates/DUF2267.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2267", "n_seqs": 253, "length": 158, "gap_rates": [0.7114624505928854, 0.24110671936758893, 0.07114624505928854, 0.039525691699604744, 0.03162055335968379, 0.03162055335968379, 0.02766798418972332, 0.02766798418972332, 0.02766798418972332, 0.023715415019762844, 0.023715415019762844, 0.023715415019762844, 0.023715415019762844, 0.04743083003952569, 0.932806324110672, 0.05533596837944664, 0.09881422924901186, 0.015810276679841896, 0.015810276679841896, 0.011857707509881422, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.007905138339920948, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.8932806324110671, 0.8932806324110671, 0.8972332015810277, 0.9011857707509882, 0.9051383399209486, 0.9051383399209486, 0.9051383399209486, 0.9051383399209486, 0.8972332015810277, 0.8972332015810277, 0.8932806324110671, 0.8735177865612648, 0.003952569169960474, 0.003952569169960474, 0.0, 0.0, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.019762845849802372, 0.1422924901185771, 0.16205533596837945, 0.33201581027667987, 0.31225296442687744, 0.8142292490118577, 0.8379446640316206, 0.8656126482213439, 0.9367588932806324, 0.9367588932806324, 0.9367588932806324, 0.9367588932806324, 0.9130434782608695, 0.8379446640316206, 0.8260869565217391, 0.5098814229249012, 0.08695652173913043, 0.1067193675889328, 0.007905138339920948, 0.6561264822134387, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.9407114624505929, 0.06324110671936758, 0.9011857707509882, 0.9446640316205533, 0.9407114624505929, 0.83399209486166, 0.04743083003952569, 0.03557312252964427, 0.03162055335968379, 0.03162055335968379, 0.007905138339920948, 0.8300395256916996, 0.8932806324110671, 0.9407114624505929, 0.9209486166007905, 0.8774703557312253, 0.6996047430830039, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.015810276679841896, 0.015810276679841896, 0.015810276679841896, 0.05138339920948617, 0.023715415019762844, 0.023715415019762844, 0.02766798418972332, 0.02766798418972332, 0.02766798418972332, 0.02766798418972332, 0.03162055335968379, 0.03162055335968379, 0.03557312252964427, 0.03557312252964427, 0.039525691699604744, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.05533596837944664, 0.09881422924901186, 0.16205533596837945, 0.2885375494071146, 0.4743083003952569], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2324.gap.json b/pfam_gap_rates/DUF2324.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3d15d3baf9e412b668179ebed43eb25f13d2f5c
--- /dev/null
+++ b/pfam_gap_rates/DUF2324.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2330.gap.json b/pfam_gap_rates/DUF2330.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3165aa502e83805a85d13caaec3b6495b70ebea4
--- /dev/null
+++ b/pfam_gap_rates/DUF2330.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2331.gap.json b/pfam_gap_rates/DUF2331.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0207ba52607834c210c4b86bcc148e83570391f5
--- /dev/null
+++ b/pfam_gap_rates/DUF2331.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2332.gap.json b/pfam_gap_rates/DUF2332.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09257708d4c56878ad12b26bb009b9e44ebf0a9c
--- /dev/null
+++ b/pfam_gap_rates/DUF2332.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2340.gap.json b/pfam_gap_rates/DUF2340.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30e82ff5762981143c707154626c09c2bba83228
--- /dev/null
+++ b/pfam_gap_rates/DUF2340.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2363.gap.json b/pfam_gap_rates/DUF2363.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7447ae854064aa35d3c4da20da29016b147ef768
--- /dev/null
+++ b/pfam_gap_rates/DUF2363.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2367.gap.json b/pfam_gap_rates/DUF2367.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec4d6fee44aab7beed7e7a35a7dd73cc6cb3e2b8
--- /dev/null
+++ b/pfam_gap_rates/DUF2367.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2367", "n_seqs": 149, "length": 123, "gap_rates": [0.9463087248322147, 0.8926174496644296, 0.8523489932885906, 0.8523489932885906, 0.8523489932885906, 0.8389261744966443, 0.8389261744966443, 0.8456375838926175, 0.8322147651006712, 0.8456375838926175, 0.7785234899328859, 0.7181208053691275, 0.6577181208053692, 0.6174496644295302, 0.5906040268456376, 0.5704697986577181, 0.5704697986577181, 0.5973154362416108, 0.6040268456375839, 0.5838926174496645, 0.5704697986577181, 0.5637583892617449, 0.5637583892617449, 0.5704697986577181, 0.5771812080536913, 0.5503355704697986, 0.8993288590604027, 0.9395973154362416, 0.8590604026845637, 0.5167785234899329, 0.5234899328859061, 0.5234899328859061, 0.4966442953020134, 0.5100671140939598, 0.4899328859060403, 0.5033557046979866, 0.5302013422818792, 0.5033557046979866, 0.5100671140939598, 0.4563758389261745, 0.44966442953020136, 0.436241610738255, 0.9060402684563759, 0.9261744966442953, 0.8590604026845637, 0.48322147651006714, 0.48322147651006714, 0.44966442953020136, 0.4429530201342282, 0.42953020134228187, 0.42953020134228187, 0.44966442953020136, 0.436241610738255, 0.40939597315436244, 0.912751677852349, 0.8120805369127517, 0.5838926174496645, 0.4966442953020134, 0.4161073825503356, 0.40268456375838924, 0.40268456375838924, 0.38926174496644295, 0.3624161073825503, 0.31543624161073824, 0.8322147651006712, 0.8456375838926175, 0.912751677852349, 0.8791946308724832, 0.8322147651006712, 0.825503355704698, 0.2483221476510067, 0.21476510067114093, 0.2080536912751678, 0.2080536912751678, 0.19463087248322147, 0.18120805369127516, 0.18791946308724833, 0.174496644295302, 0.11409395973154363, 0.06711409395973154, 0.03355704697986577, 0.026845637583892617, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.912751677852349, 0.912751677852349, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.020134228187919462, 0.013422818791946308, 0.006711409395973154, 0.9328859060402684, 0.9328859060402684, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.8926174496644296, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.12080536912751678, 0.31543624161073824, 0.5234899328859061, 0.6442953020134228], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2399.gap.json b/pfam_gap_rates/DUF2399.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ccadc4cbae4e726be326b5f8acccc1f47261e0d
--- /dev/null
+++ b/pfam_gap_rates/DUF2399.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2415.gap.json b/pfam_gap_rates/DUF2415.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..386cf6e809c6ab11b64394ee82b6fc405022c389
--- /dev/null
+++ b/pfam_gap_rates/DUF2415.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2461.gap.json b/pfam_gap_rates/DUF2461.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..866185655e119cb533e38fda2bc3645832a1c739
--- /dev/null
+++ b/pfam_gap_rates/DUF2461.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2497.gap.json b/pfam_gap_rates/DUF2497.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1312937edd0a654b26143e9a4d5b0a53cf1635cc
--- /dev/null
+++ b/pfam_gap_rates/DUF2497.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2505.gap.json b/pfam_gap_rates/DUF2505.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..31a266cefe1d648e8137066cc347e3bd495001a2
--- /dev/null
+++ b/pfam_gap_rates/DUF2505.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2582.gap.json b/pfam_gap_rates/DUF2582.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc84bb3f44b5af1afe25651ad583ce74dfb958eb
--- /dev/null
+++ b/pfam_gap_rates/DUF2582.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2582", "n_seqs": 121, "length": 67, "gap_rates": [0.5041322314049587, 0.4793388429752066, 0.371900826446281, 0.1652892561983471, 0.05785123966942149, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.8016528925619835, 0.04132231404958678, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.8925619834710744, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04132231404958678, 0.04132231404958678, 0.09090909090909091, 0.14049586776859505, 0.19008264462809918, 0.19834710743801653, 0.24793388429752067, 0.2892561983471074, 0.3140495867768595, 0.3305785123966942, 0.5206611570247934, 0.7272727272727273], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2587.gap.json b/pfam_gap_rates/DUF2587.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44fc8899d0cb1d996ab103c0bff5bff18649f66d
--- /dev/null
+++ b/pfam_gap_rates/DUF2587.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2587", "n_seqs": 140, "length": 164, "gap_rates": [0.8357142857142857, 0.6357142857142857, 0.45, 0.32142857142857145, 0.22857142857142856, 0.19285714285714287, 0.15, 0.09285714285714286, 0.07857142857142857, 0.05, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.03571428571428571, 0.02857142857142857, 0.02142857142857143, 0.014285714285714285, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014285714285714285, 0.04285714285714286, 0.07142857142857142, 0.014285714285714285, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.02142857142857143, 0.02857142857142857, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.6571428571428571, 0.10714285714285714, 0.02857142857142857, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.8142857142857143, 0.8571428571428571, 0.95, 0.8714285714285714, 0.8357142857142857, 0.7785714285714286, 0.17142857142857143, 0.22142857142857142, 0.19285714285714287, 0.2357142857142857, 0.29285714285714287, 0.3, 0.36428571428571427, 0.4, 0.4357142857142857, 0.4785714285714286, 0.5285714285714286, 0.5714285714285714, 0.5714285714285714, 0.5928571428571429, 0.6, 0.5928571428571429, 0.6071428571428571, 0.5857142857142857, 0.5928571428571429, 0.6, 0.6, 0.6285714285714286, 0.6714285714285714, 0.8357142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF269.gap.json b/pfam_gap_rates/DUF269.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1de8408218b3197f57233ab8f3532b1ade73f18a
--- /dev/null
+++ b/pfam_gap_rates/DUF269.gap.json
@@ -0,0 +1 @@
+{"family": "DUF269", "n_seqs": 114, "length": 121, "gap_rates": [0.08771929824561403, 0.06140350877192982, 0.017543859649122806, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.017543859649122806, 0.017543859649122806, 0.008771929824561403, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008771929824561403, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02631578947368421, 0.05263157894736842, 0.07894736842105263, 0.07894736842105263, 0.09649122807017543, 0.543859649122807], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF273.gap.json b/pfam_gap_rates/DUF273.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..394f2f0be7eaa9f3ec1f8e003937931b5a60409b
--- /dev/null
+++ b/pfam_gap_rates/DUF273.gap.json
@@ -0,0 +1 @@
+{"family": "DUF273", "n_seqs": 165, "length": 242, "gap_rates": [0.5636363636363636, 0.41818181818181815, 0.40606060606060607, 0.4, 0.4, 0.4, 0.4, 0.3878787878787879, 0.3878787878787879, 0.3878787878787879, 0.3878787878787879, 0.3878787878787879, 0.3878787878787879, 0.3878787878787879, 0.3939393939393939, 0.9333333333333333, 0.9333333333333333, 0.9212121212121213, 0.4, 0.9272727272727272, 0.9333333333333333, 0.8545454545454545, 0.38181818181818183, 0.3878787878787879, 0.3878787878787879, 0.8484848484848485, 0.9393939393939394, 0.8909090909090909, 0.8303030303030303, 0.38181818181818183, 0.7575757575757576, 0.6909090909090909, 0.38181818181818183, 0.8727272727272727, 0.8484848484848485, 0.3878787878787879, 0.38181818181818183, 0.37575757575757573, 0.7878787878787878, 0.3696969696969697, 0.36363636363636365, 0.34545454545454546, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.2787878787878788, 0.28484848484848485, 0.26666666666666666, 0.9393939393939394, 0.9393939393939394, 0.2606060606060606, 0.9272727272727272, 0.9212121212121213, 0.2606060606060606, 0.2606060606060606, 0.23030303030303031, 0.21818181818181817, 0.21818181818181817, 0.21212121212121213, 0.21212121212121213, 0.21212121212121213, 0.21212121212121213, 0.20606060606060606, 0.2, 0.19393939393939394, 0.2, 0.2, 0.18787878787878787, 0.18787878787878787, 0.18787878787878787, 0.19393939393939394, 0.19393939393939394, 0.2, 0.19393939393939394, 0.19393939393939394, 0.19393939393939394, 0.19393939393939394, 0.19393939393939394, 0.19393939393939394, 0.21212121212121213, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.20606060606060606, 0.20606060606060606, 0.21212121212121213, 0.20606060606060606, 0.20606060606060606, 0.20606060606060606, 0.20606060606060606, 0.2, 0.19393939393939394, 0.23636363636363636, 0.2, 0.2, 0.19393939393939394, 0.2, 0.23030303030303031, 0.24848484848484848, 0.2606060606060606, 0.2606060606060606, 0.26666666666666666, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2787878787878788, 0.2909090909090909, 0.296969696969697, 0.296969696969697, 0.296969696969697, 0.2909090909090909, 0.28484848484848485, 0.2787878787878788, 0.2787878787878788, 0.28484848484848485, 0.2909090909090909, 0.9393939393939394, 0.3090909090909091, 0.30303030303030304, 0.2909090909090909, 0.2909090909090909, 0.2909090909090909, 0.2909090909090909, 0.2909090909090909, 0.2909090909090909, 0.28484848484848485, 0.2787878787878788, 0.2727272727272727, 0.26666666666666666, 0.2606060606060606, 0.3151515151515151, 0.3151515151515151, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.30303030303030304, 0.3151515151515151, 0.3151515151515151, 0.3333333333333333, 0.3151515151515151, 0.3515151515151515, 0.3393939393939394, 0.34545454545454546, 0.3212121212121212, 0.3212121212121212, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.3151515151515151, 0.3151515151515151, 0.3151515151515151, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.3090909090909091, 0.3151515151515151, 0.3151515151515151, 0.3212121212121212, 0.3212121212121212, 0.3212121212121212, 0.3515151515151515, 0.3393939393939394, 0.3212121212121212, 0.9454545454545454, 0.6545454545454545, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.9272727272727272, 0.9272727272727272, 0.2909090909090909, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.3090909090909091, 0.3212121212121212, 0.3151515151515151, 0.3151515151515151, 0.3212121212121212, 0.3151515151515151, 0.3151515151515151, 0.32727272727272727, 0.34545454545454546, 0.34545454545454546, 0.3515151515151515, 0.6363636363636364, 0.4484848484848485, 0.38181818181818183, 0.3575757575757576, 0.3575757575757576, 0.3575757575757576, 0.36363636363636365, 0.36363636363636365, 0.36363636363636365, 0.36363636363636365, 0.36363636363636365, 0.36363636363636365, 0.37575757575757573, 0.3878787878787879, 0.4666666666666667, 0.5575757575757576, 0.6545454545454545, 0.7454545454545455, 0.8181818181818182, 0.8424242424242424, 0.8666666666666667, 0.896969696969697, 0.9030303030303031, 0.9212121212121213], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2786.gap.json b/pfam_gap_rates/DUF2786.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62a2d24ede366710580a384d2cfc36ab4b8986ac
--- /dev/null
+++ b/pfam_gap_rates/DUF2786.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2786", "n_seqs": 239, "length": 41, "gap_rates": [0.4351464435146444, 0.1297071129707113, 0.029288702928870293, 0.012552301255230125, 0.008368200836820083, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.3263598326359833, 0.0, 0.7824267782426778, 0.0, 0.02510460251046025, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.012552301255230125, 0.012552301255230125, 0.016736401673640166, 0.016736401673640166, 0.03765690376569038, 0.11715481171548117, 0.6359832635983264], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2794.gap.json b/pfam_gap_rates/DUF2794.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..057dbd8f331c27bb1759bf4dea64003a8186ee17
--- /dev/null
+++ b/pfam_gap_rates/DUF2794.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2794", "n_seqs": 158, "length": 85, "gap_rates": [0.2721518987341772, 0.11392405063291139, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.04430379746835443, 0.0379746835443038, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.012658227848101266, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.012658227848101266, 0.0189873417721519, 0.0189873417721519, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.03164556962025317, 0.03164556962025317, 0.006329113924050633, 0.012658227848101266, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.012658227848101266, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.0189873417721519, 0.006329113924050633, 0.0189873417721519, 0.0189873417721519, 0.04430379746835443, 0.02531645569620253, 0.02531645569620253, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.05063291139240506, 0.05063291139240506, 0.06329113924050633, 0.06329113924050633, 0.11392405063291139], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2817.gap.json b/pfam_gap_rates/DUF2817.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3879a25b69e25a7dce7eb4122cc3a05c969e14bb
--- /dev/null
+++ b/pfam_gap_rates/DUF2817.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF2842.gap.json b/pfam_gap_rates/DUF2842.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96c7648e5af88a6765c939a9cb12894b707b64ce
--- /dev/null
+++ b/pfam_gap_rates/DUF2842.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2891.gap.json b/pfam_gap_rates/DUF2891.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b48f649feade937a7bfeec13e8c8cfb695a3c089
--- /dev/null
+++ b/pfam_gap_rates/DUF2891.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2933.gap.json b/pfam_gap_rates/DUF2933.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f15db4d3cd2528254ebef6fc8978a76aa6f009ee
--- /dev/null
+++ b/pfam_gap_rates/DUF2933.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2933", "n_seqs": 168, "length": 56, "gap_rates": [0.6130952380952381, 0.4107142857142857, 0.3392857142857143, 0.2916666666666667, 0.2857142857142857, 0.27976190476190477, 0.25595238095238093, 0.25595238095238093, 0.25595238095238093, 0.25, 0.24404761904761904, 0.24404761904761904, 0.24404761904761904, 0.24404761904761904, 0.24404761904761904, 0.24404761904761904, 0.23809523809523808, 0.21428571428571427, 0.18452380952380953, 0.9464285714285714, 0.9345238095238095, 0.13690476190476192, 0.10714285714285714, 0.08928571428571429, 0.05952380952380952, 0.047619047619047616, 0.047619047619047616, 0.023809523809523808, 0.005952380952380952, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005952380952380952, 0.005952380952380952, 0.011904761904761904, 0.005952380952380952, 0.011904761904761904, 0.011904761904761904, 0.8988095238095238, 0.03571428571428571, 0.03571428571428571, 0.047619047619047616, 0.09523809523809523, 0.8869047619047619, 0.8333333333333334, 0.07142857142857142, 0.08928571428571429, 0.125, 0.15476190476190477, 0.23214285714285715, 0.38095238095238093, 0.6964285714285714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF294.gap.json b/pfam_gap_rates/DUF294.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b730d3d951debe34deed482a9baf3ba486e2eec
--- /dev/null
+++ b/pfam_gap_rates/DUF294.gap.json
@@ -0,0 +1 @@
+{"family": "DUF294", "n_seqs": 845, "length": 147, "gap_rates": [0.6366863905325444, 0.5124260355029586, 0.4390532544378698, 0.4106508875739645, 0.38224852071005916, 0.3680473372781065, 0.3621301775147929, 0.35502958579881655, 0.3526627218934911, 0.3431952662721893, 0.3349112426035503, 0.3088757396449704, 0.293491124260355, 0.2319526627218935, 0.17041420118343195, 0.1301775147928994, 0.1136094674556213, 0.10177514792899409, 0.09467455621301775, 0.08520710059171598, 0.08047337278106509, 0.06390532544378698, 0.05325443786982249, 0.0485207100591716, 0.046153846153846156, 0.04142011834319527, 0.040236686390532544, 0.03431952662721893, 0.03431952662721893, 0.03076923076923077, 0.028402366863905324, 0.027218934911242602, 0.02603550295857988, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.022485207100591716, 0.020118343195266272, 0.01893491124260355, 0.020118343195266272, 0.01775147928994083, 0.13727810650887573, 0.13846153846153847, 0.08402366863905325, 0.8165680473372781, 0.834319526627219, 0.8615384615384616, 0.8236686390532545, 0.7846153846153846, 0.02603550295857988, 0.9171597633136095, 0.014201183431952662, 0.010650887573964497, 0.009467455621301775, 0.009467455621301775, 0.009467455621301775, 0.009467455621301775, 0.009467455621301775, 0.008284023668639054, 0.007100591715976331, 0.007100591715976331, 0.007100591715976331, 0.007100591715976331, 0.007100591715976331, 0.007100591715976331, 0.007100591715976331, 0.007100591715976331, 0.008284023668639054, 0.008284023668639054, 0.009467455621301775, 0.010650887573964497, 0.009467455621301775, 0.009467455621301775, 0.009467455621301775, 0.010650887573964497, 0.010650887573964497, 0.011834319526627219, 0.01301775147928994, 0.01301775147928994, 0.01301775147928994, 0.01301775147928994, 0.014201183431952662, 0.7562130177514793, 0.9372781065088758, 0.7798816568047338, 0.5715976331360947, 0.3621301775147929, 0.16568047337278108, 0.13609467455621302, 0.04260355029585799, 0.028402366863905324, 0.028402366863905324, 0.028402366863905324, 0.028402366863905324, 0.029585798816568046, 0.03195266272189349, 0.033136094674556214, 0.03431952662721893, 0.036686390532544376, 0.036686390532544376, 0.04378698224852071, 0.05325443786982249, 0.06153846153846154, 0.07218934911242604, 0.08284023668639054, 0.08757396449704143, 0.09230769230769231, 0.09822485207100591, 0.10059171597633136, 0.10414201183431952, 0.11715976331360947, 0.30414201183431955, 0.31242603550295855, 0.32189349112426036, 0.3289940828402367, 0.3289940828402367, 0.3289940828402367, 0.3289940828402367, 0.3289940828402367, 0.3254437869822485, 0.3254437869822485, 0.32662721893491126, 0.3349112426035503, 0.3384615384615385, 0.33136094674556216, 0.32781065088757394, 0.32662721893491126, 0.32662721893491126, 0.32662721893491126, 0.32662721893491126, 0.32662721893491126, 0.32662721893491126, 0.32662721893491126, 0.32781065088757394, 0.32781065088757394, 0.32781065088757394, 0.32781065088757394, 0.3301775147928994, 0.3301775147928994, 0.3301775147928994, 0.3337278106508876, 0.33727810650887574, 0.3479289940828402, 0.37751479289940826, 0.44970414201183434, 0.5857988165680473, 0.7964497041420119], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2961.gap.json b/pfam_gap_rates/DUF2961.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b27b9b0256ff73113d42cfdf53cc320ac5fc5cf
--- /dev/null
+++ b/pfam_gap_rates/DUF2961.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2992.gap.json b/pfam_gap_rates/DUF2992.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3cb096d7e73fd58d341a18f0cfcb053a546fff3c
--- /dev/null
+++ b/pfam_gap_rates/DUF2992.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2992", "n_seqs": 158, "length": 139, "gap_rates": [0.17721518987341772, 0.10126582278481013, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.0949367088607595, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.0949367088607595, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.9430379746835443, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.08227848101265822, 0.08227848101265822, 0.0759493670886076, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06329113924050633, 0.06329113924050633, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.8987341772151899, 0.9430379746835443, 0.8860759493670886, 0.056962025316455694, 0.06329113924050633, 0.056962025316455694, 0.06329113924050633, 0.0759493670886076, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.0759493670886076, 0.8670886075949367, 0.9367088607594937, 0.8037974683544303, 0.44936708860759494, 0.06329113924050633, 0.06329113924050633, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.06962025316455696, 0.056962025316455694, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.0759493670886076, 0.0759493670886076, 0.06329113924050633, 0.06329113924050633, 0.08860759493670886, 0.10126582278481013, 0.056962025316455694, 0.056962025316455694, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.06329113924050633, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.0949367088607595, 0.10126582278481013], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3035.gap.json b/pfam_gap_rates/DUF3035.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7a82eaeb1b41595dcb1296e08f2db6739f4a4fc
--- /dev/null
+++ b/pfam_gap_rates/DUF3035.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3035", "n_seqs": 131, "length": 161, "gap_rates": [0.5114503816793893, 0.0916030534351145, 0.061068702290076333, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.37404580152671757, 0.732824427480916, 0.9083969465648855, 0.8320610687022901, 0.5954198473282443, 0.1450381679389313, 0.16030534351145037, 0.13740458015267176, 0.12213740458015267, 0.07633587786259542, 0.061068702290076333, 0.061068702290076333, 0.03816793893129771, 0.03816793893129771, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.2748091603053435, 0.007633587786259542, 0.007633587786259542, 0.32061068702290074, 0.015267175572519083, 0.015267175572519083, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.04580152671755725, 0.030534351145038167, 0.030534351145038167, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.05343511450381679, 0.04580152671755725, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.06870229007633588, 0.06870229007633588, 0.061068702290076333, 0.05343511450381679, 0.05343511450381679, 0.15267175572519084, 0.15267175572519084, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.17557251908396945, 0.22137404580152673, 0.2748091603053435, 0.5038167938931297, 0.816793893129771, 0.6946564885496184, 0.4961832061068702, 0.44274809160305345, 0.35877862595419846, 0.24427480916030533, 0.1984732824427481, 0.12213740458015267, 0.06870229007633588, 0.06870229007633588, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.09923664122137404, 0.26717557251908397, 0.22900763358778625, 0.1450381679389313, 0.1450381679389313, 0.13740458015267176, 0.1297709923664122, 0.1297709923664122, 0.1297709923664122, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.1297709923664122, 0.08396946564885496, 0.08396946564885496, 0.0916030534351145, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.0916030534351145, 0.09923664122137404, 0.09923664122137404, 0.12213740458015267, 0.15267175572519084, 0.1450381679389313, 0.15267175572519084, 0.16030534351145037, 0.16793893129770993, 0.16793893129770993, 0.1984732824427481, 0.2366412213740458, 0.22900763358778625, 0.24427480916030533, 0.24427480916030533, 0.24427480916030533, 0.25190839694656486, 0.2748091603053435, 0.29770992366412213, 0.40458015267175573, 0.6106870229007634, 0.6335877862595419, 0.5725190839694656, 0.29770992366412213, 0.29770992366412213, 0.29770992366412213, 0.29770992366412213, 0.3053435114503817, 0.3053435114503817, 0.3053435114503817, 0.3053435114503817, 0.3053435114503817, 0.31297709923664124, 0.3282442748091603, 0.3282442748091603, 0.3282442748091603, 0.3435114503816794, 0.3511450381679389, 0.35877862595419846, 0.35877862595419846, 0.37404580152671757, 0.37404580152671757, 0.3816793893129771, 0.3969465648854962, 0.42748091603053434, 0.48854961832061067, 0.5725190839694656], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3039.gap.json b/pfam_gap_rates/DUF3039.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8de2d06c280410720b3a51087b82befd05eb4d45
--- /dev/null
+++ b/pfam_gap_rates/DUF3039.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3039", "n_seqs": 231, "length": 57, "gap_rates": [0.6017316017316018, 0.05194805194805195, 0.05194805194805195, 0.04329004329004329, 0.04329004329004329, 0.03896103896103896, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.025974025974025976, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7186147186147186, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.008658008658008658, 0.021645021645021644, 0.021645021645021644, 0.025974025974025976, 0.03896103896103896, 0.12987012987012986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3052.gap.json b/pfam_gap_rates/DUF3052.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc1f200b9a1cb679f56d7f63a6d7212c8355018b
--- /dev/null
+++ b/pfam_gap_rates/DUF3052.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3052", "n_seqs": 239, "length": 128, "gap_rates": [0.4476987447698745, 0.28870292887029286, 0.200836820083682, 0.17573221757322174, 0.17573221757322174, 0.17573221757322174, 0.17154811715481172, 0.17154811715481172, 0.17154811715481172, 0.16317991631799164, 0.1589958158995816, 0.1589958158995816, 0.1589958158995816, 0.1589958158995816, 0.1589958158995816, 0.1589958158995816, 0.1506276150627615, 0.1506276150627615, 0.1506276150627615, 0.16736401673640167, 0.16317991631799164, 0.16736401673640167, 0.1589958158995816, 0.15481171548117154, 0.14644351464435146, 0.14644351464435146, 0.14644351464435146, 0.14644351464435146, 0.14644351464435146, 0.1506276150627615, 0.1506276150627615, 0.14644351464435146, 0.1506276150627615, 0.1506276150627615, 0.18410041841004185, 0.14225941422594143, 0.12133891213389121, 0.11715481171548117, 0.16736401673640167, 0.10460251046025104, 0.09623430962343096, 0.09205020920502092, 0.08368200836820083, 0.0794979079497908, 0.07112970711297072, 0.07112970711297072, 0.07112970711297072, 0.06694560669456066, 0.0502092050209205, 0.05439330543933055, 0.04184100418410042, 0.05439330543933055, 0.0502092050209205, 0.04184100418410042, 0.1297071129707113, 0.03765690376569038, 0.03347280334728033, 0.029288702928870293, 0.895397489539749, 0.9246861924686193, 0.8870292887029289, 0.02510460251046025, 0.02510460251046025, 0.02092050209205021, 0.03347280334728033, 0.02092050209205021, 0.02092050209205021, 0.012552301255230125, 0.012552301255230125, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.008368200836820083, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.03347280334728033, 0.02092050209205021, 0.012552301255230125, 0.008368200836820083, 0.012552301255230125, 0.008368200836820083, 0.008368200836820083, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.20920502092050208, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.0794979079497908, 0.14644351464435146, 0.5355648535564853], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3067.gap.json b/pfam_gap_rates/DUF3067.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb77c09b3511c7243dbcea9816db21053ebb7a08
--- /dev/null
+++ b/pfam_gap_rates/DUF3067.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3067", "n_seqs": 112, "length": 117, "gap_rates": [0.6607142857142857, 0.08928571428571429, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.026785714285714284, 0.026785714285714284, 0.5892857142857143, 0.5982142857142857, 0.9375, 0.5982142857142857, 0.5892857142857143, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.017857142857142856, 0.017857142857142856, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.026785714285714284, 0.03571428571428571, 0.03571428571428571, 0.05357142857142857, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.9375, 0.9375, 0.9375, 0.9375, 0.9375, 0.9375, 0.9375, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.9196428571428571, 0.9196428571428571, 0.044642857142857144, 0.044642857142857144, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.08035714285714286, 0.125, 0.7142857142857143, 0.9464285714285714, 0.9464285714285714, 0.7410714285714286, 0.6607142857142857, 0.14285714285714285, 0.1875, 0.23214285714285715, 0.23214285714285715, 0.24107142857142858, 0.25, 0.25892857142857145, 0.33035714285714285], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3099.gap.json b/pfam_gap_rates/DUF3099.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a28691974cd6d9ed70621573fcbfb78fef9e7b21
--- /dev/null
+++ b/pfam_gap_rates/DUF3099.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3099", "n_seqs": 208, "length": 72, "gap_rates": [0.3798076923076923, 0.23076923076923078, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.1971153846153846, 0.19230769230769232, 0.19230769230769232, 0.1875, 0.1875, 0.17307692307692307, 0.13942307692307693, 0.07211538461538461, 0.0673076923076923, 0.07211538461538461, 0.052884615384615384, 0.03365384615384615, 0.028846153846153848, 0.019230769230769232, 0.019230769230769232, 0.014423076923076924, 0.009615384615384616, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.375, 0.3701923076923077, 0.3317307692307692, 0.6971153846153846, 0.38461538461538464, 0.052884615384615384, 0.004807692307692308, 0.0, 0.03365384615384615, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.019230769230769232, 0.0, 0.0, 0.0, 0.0, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.04326923076923077, 0.11538461538461539, 0.20673076923076922, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF310.gap.json b/pfam_gap_rates/DUF310.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..162b30cca935e72b0da34ba4ca5c91d38f11ee59
--- /dev/null
+++ b/pfam_gap_rates/DUF310.gap.json
@@ -0,0 +1 @@
+{"family": "DUF310", "n_seqs": 118, "length": 148, "gap_rates": [0.864406779661017, 0.6271186440677966, 0.5677966101694916, 0.4745762711864407, 0.3813559322033898, 0.3135593220338983, 0.2627118644067797, 0.211864406779661, 0.19491525423728814, 0.15254237288135594, 0.1440677966101695, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.09322033898305085, 0.3474576271186441, 0.2966101694915254, 0.7542372881355932, 0.07627118644067797, 0.025423728813559324, 0.8220338983050848, 0.8559322033898306, 0.923728813559322, 0.923728813559322, 0.8983050847457628, 0.8305084745762712, 0.8135593220338984, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.0423728813559322, 0.1440677966101695, 0.16101694915254236, 0.15254237288135594, 0.2457627118644068, 0.2542372881355932, 0.2627118644067797, 0.2542372881355932, 0.7372881355932204, 0.8135593220338984, 0.8728813559322034, 0.940677966101695, 0.9491525423728814, 0.940677966101695, 0.9152542372881356, 0.847457627118644, 0.788135593220339, 0.5677966101694916, 0.3135593220338983, 0.1016949152542373, 0.07627118644067797, 0.05084745762711865, 0.025423728813559324, 0.00847457627118644, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8728813559322034, 0.8898305084745762, 0.9491525423728814, 0.923728813559322, 0.8728813559322034, 0.864406779661017, 0.00847457627118644, 0.864406779661017, 0.8135593220338984, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00847457627118644, 0.0, 0.0, 0.711864406779661, 0.711864406779661, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9491525423728814, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3644067796610169, 0.7457627118644068, 0.8220338983050848, 0.8728813559322034, 0.8389830508474576, 0.7796610169491526, 0.711864406779661, 0.00847457627118644, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00847457627118644, 0.00847457627118644, 0.01694915254237288, 0.09322033898305085, 0.11864406779661017, 0.17796610169491525, 0.2288135593220339, 0.2796610169491525, 0.423728813559322], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3102.gap.json b/pfam_gap_rates/DUF3102.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fbec1507fbee97cfa331a0068f91fc4300c2e26
--- /dev/null
+++ b/pfam_gap_rates/DUF3102.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3102", "n_seqs": 107, "length": 133, "gap_rates": [0.6261682242990654, 0.616822429906542, 0.5887850467289719, 0.5327102803738317, 0.48598130841121495, 0.45794392523364486, 0.4485981308411215, 0.4485981308411215, 0.4485981308411215, 0.4485981308411215, 0.4485981308411215, 0.4205607476635514, 0.4205607476635514, 0.42990654205607476, 0.42990654205607476, 0.4205607476635514, 0.40186915887850466, 0.3925233644859813, 0.40186915887850466, 0.3925233644859813, 0.38317757009345793, 0.32710280373831774, 0.27102803738317754, 0.11214953271028037, 0.07476635514018691, 0.04672897196261682, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.028037383177570093, 0.9439252336448598, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.056074766355140186, 0.037383177570093455, 0.037383177570093455, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.056074766355140186, 0.07476635514018691, 0.09345794392523364, 0.11214953271028037, 0.11214953271028037, 0.12149532710280374, 0.16822429906542055, 0.3177570093457944, 0.38317757009345793, 0.45794392523364486, 0.5420560747663551, 0.719626168224299, 0.8504672897196262, 0.7663551401869159, 0.5607476635514018, 0.5514018691588785, 0.5420560747663551, 0.514018691588785, 0.5046728971962616, 0.42990654205607476, 0.40186915887850466, 0.35514018691588783, 0.37383177570093457, 0.34579439252336447, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.32710280373831774, 0.32710280373831774, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.3364485981308411, 0.3364485981308411, 0.32710280373831774, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.34579439252336447, 0.35514018691588783, 0.3644859813084112, 0.3925233644859813, 0.48598130841121495, 0.6635514018691588], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3107.gap.json b/pfam_gap_rates/DUF3107.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..800a72c318e57876bde74f479fe074ed8b484781
--- /dev/null
+++ b/pfam_gap_rates/DUF3107.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3112.gap.json b/pfam_gap_rates/DUF3112.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed86c9117db7bc917d5048a5170a45db172392c1
--- /dev/null
+++ b/pfam_gap_rates/DUF3112.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3112", "n_seqs": 121, "length": 220, "gap_rates": [0.6942148760330579, 0.6942148760330579, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6942148760330579, 0.6859504132231405, 0.6859504132231405, 0.7024793388429752, 0.7024793388429752, 0.6859504132231405, 0.6942148760330579, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.6859504132231405, 0.7272727272727273, 0.6859504132231405, 0.6942148760330579, 0.6942148760330579, 0.7024793388429752, 0.7107438016528925, 0.7107438016528925, 0.7107438016528925, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.7520661157024794, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.743801652892562, 0.7520661157024794, 0.7520661157024794, 0.7520661157024794, 0.9090909090909091, 0.743801652892562, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.7355371900826446, 0.743801652892562, 0.743801652892562, 0.7355371900826446, 0.7272727272727273, 0.768595041322314, 0.768595041322314, 0.7603305785123967, 0.7603305785123967, 0.7603305785123967, 0.7520661157024794, 0.7520661157024794, 0.7520661157024794, 0.7272727272727273, 0.7851239669421488, 0.7851239669421488, 0.7768595041322314, 0.7768595041322314, 0.7520661157024794, 0.7520661157024794, 0.743801652892562, 0.71900826446281, 0.7024793388429752, 0.6446280991735537, 0.5041322314049587, 0.2975206611570248, 0.15702479338842976, 0.0743801652892562, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.0743801652892562, 0.0743801652892562, 0.06611570247933884, 0.0743801652892562, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.9008264462809917, 0.7024793388429752, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.08264462809917356, 0.09090909090909091, 0.09090909090909091, 0.5702479338842975], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3189.gap.json b/pfam_gap_rates/DUF3189.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a148621fc818ff189d1e78e94b936654b306f01
--- /dev/null
+++ b/pfam_gap_rates/DUF3189.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3189", "n_seqs": 101, "length": 150, "gap_rates": [0.5742574257425742, 0.10891089108910891, 0.06930693069306931, 0.06930693069306931, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.06930693069306931, 0.0594059405940594, 0.0594059405940594, 0.04950495049504951, 0.039603960396039604, 0.13861386138613863, 0.12871287128712872, 0.10891089108910891, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.0594059405940594, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.0297029702970297, 0.0297029702970297, 0.039603960396039604, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.039603960396039604, 0.10891089108910891, 0.06930693069306931, 0.04950495049504951, 0.039603960396039604, 0.039603960396039604, 0.019801980198019802, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.019801980198019802, 0.0, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.25742574257425743, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.22772277227722773, 0.7623762376237624, 0.7623762376237624, 0.7524752475247525, 0.0594059405940594, 0.04950495049504951, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0297029702970297, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.04950495049504951, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.04950495049504951, 0.0594059405940594, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.09900990099009901, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.10891089108910891, 0.1188118811881188, 0.12871287128712872, 0.13861386138613863, 0.1485148514851485, 0.16831683168316833, 0.18811881188118812, 0.24752475247524752, 0.5148514851485149], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3224.gap.json b/pfam_gap_rates/DUF3224.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..267387a470b9cf1ef482f04a5d1b7659e6a0b6ae
--- /dev/null
+++ b/pfam_gap_rates/DUF3224.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3224", "n_seqs": 124, "length": 140, "gap_rates": [0.6532258064516129, 0.3225806451612903, 0.21774193548387097, 0.12903225806451613, 0.12096774193548387, 0.10483870967741936, 0.0967741935483871, 0.08870967741935484, 0.08870967741935484, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08870967741935484, 0.0967741935483871, 0.10483870967741936, 0.13709677419354838, 0.3951612903225806, 0.9193548387096774, 0.9435483870967742, 0.9032258064516129, 0.16129032258064516, 0.11290322580645161, 0.9435483870967742, 0.08870967741935484, 0.06451612903225806, 0.04838709677419355, 0.04032258064516129, 0.04032258064516129, 0.03225806451612903, 0.03225806451612903, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.04032258064516129, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.9354838709677419, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.4596774193548387, 0.8790322580645161, 0.8870967741935484, 0.9112903225806451, 0.8951612903225806, 0.8790322580645161, 0.8387096774193549, 0.12096774193548387, 0.04838709677419355, 0.04032258064516129, 0.03225806451612903, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04838709677419355, 0.024193548387096774, 0.024193548387096774, 0.03225806451612903, 0.9354838709677419, 0.782258064516129, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.08064516129032258, 0.07258064516129033, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.03225806451612903, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.07258064516129033, 0.4112903225806452, 0.16129032258064516, 0.18548387096774194, 0.8629032258064516, 0.20161290322580644, 0.21774193548387097, 0.22580645161290322, 0.25, 0.27419354838709675, 0.33064516129032256, 0.45161290322580644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3318.gap.json b/pfam_gap_rates/DUF3318.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b4a910573691cdaca98d533783122061fe859ba
--- /dev/null
+++ b/pfam_gap_rates/DUF3318.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3326.gap.json b/pfam_gap_rates/DUF3326.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aca8a69da52ce2cc7070d18d24f6b212c7d63001
--- /dev/null
+++ b/pfam_gap_rates/DUF3326.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3329.gap.json b/pfam_gap_rates/DUF3329.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..132fa6612da84c7b7e411b26f296702651aa392c
--- /dev/null
+++ b/pfam_gap_rates/DUF3329.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3329", "n_seqs": 235, "length": 91, "gap_rates": [0.8085106382978723, 0.4851063829787234, 0.948936170212766, 0.4085106382978723, 0.32340425531914896, 0.251063829787234, 0.2, 0.14468085106382977, 0.10212765957446808, 0.08936170212765958, 0.06382978723404255, 0.05531914893617021, 0.0425531914893617, 0.0425531914893617, 0.03829787234042553, 0.02553191489361702, 0.02127659574468085, 0.1148936170212766, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.6978723404255319, 0.9319148936170213, 0.676595744680851, 0.01276595744680851, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00425531914893617, 0.00425531914893617, 0.0, 0.03404255319148936, 0.9148936170212766, 0.00851063829787234, 0.0, 0.00425531914893617, 0.0, 0.0, 0.05106382978723404, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00851063829787234, 0.01702127659574468, 0.02127659574468085, 0.02553191489361702, 0.029787234042553193, 0.05531914893617021, 0.06808510638297872, 0.0851063829787234, 0.15319148936170213, 0.19574468085106383, 0.30638297872340425, 0.6340425531914894], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3372.gap.json b/pfam_gap_rates/DUF3372.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acbdbb6332b0f973b3eb8e898ed052fbd6da72e7
--- /dev/null
+++ b/pfam_gap_rates/DUF3372.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3382.gap.json b/pfam_gap_rates/DUF3382.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9dc253c00a74ed762a9db24c552e5249fdedd427
--- /dev/null
+++ b/pfam_gap_rates/DUF3382.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3382", "n_seqs": 119, "length": 109, "gap_rates": [0.8571428571428571, 0.2857142857142857, 0.058823529411764705, 0.01680672268907563, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7815126050420168, 0.08403361344537816, 0.08403361344537816, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7563025210084033, 0.7563025210084033, 0.7563025210084033, 0.7563025210084033, 0.09243697478991597, 0.08403361344537816, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.03361344537815126, 0.03361344537815126, 0.16806722689075632, 0.1092436974789916, 0.11764705882352941, 0.13445378151260504, 0.20168067226890757, 0.14285714285714285, 0.1092436974789916, 0.10084033613445378, 0.05042016806722689, 0.05042016806722689, 0.07563025210084033, 0.058823529411764705, 0.058823529411764705, 0.06722689075630252, 0.08403361344537816, 0.1092436974789916, 0.21008403361344538, 0.5210084033613446, 0.7478991596638656, 0.8235294117647058, 0.9411764705882353, 0.7983193277310925, 0.6218487394957983, 0.48739495798319327, 0.07563025210084033, 0.07563025210084033, 0.06722689075630252, 0.06722689075630252, 0.07563025210084033, 0.07563025210084033, 0.06722689075630252, 0.06722689075630252, 0.07563025210084033, 0.07563025210084033, 0.08403361344537816, 0.09243697478991597, 0.09243697478991597, 0.12605042016806722, 0.20168067226890757, 0.4369747899159664], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3388.gap.json b/pfam_gap_rates/DUF3388.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d1f3fcfafb60b25c04d16b33161fb7e977ef1ee
--- /dev/null
+++ b/pfam_gap_rates/DUF3388.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3388", "n_seqs": 107, "length": 190, "gap_rates": [0.16822429906542055, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009345794392523364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009345794392523364, 0.028037383177570093, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009345794392523364, 0.0, 0.0, 0.0, 0.009345794392523364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.028037383177570093, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.018691588785046728, 0.018691588785046728, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.08411214953271028, 0.27102803738317754, 0.3925233644859813, 0.45794392523364486, 0.4766355140186916, 0.5046728971962616, 0.514018691588785, 0.5046728971962616, 0.5233644859813084, 0.5514018691588785, 0.5607476635514018, 0.6074766355140186, 0.6261682242990654, 0.6448598130841121], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3416.gap.json b/pfam_gap_rates/DUF3416.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53908e59047f9f91756ec417e5a8a81debc3a19e
--- /dev/null
+++ b/pfam_gap_rates/DUF3416.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3416", "n_seqs": 330, "length": 206, "gap_rates": [0.43636363636363634, 0.13333333333333333, 0.08484848484848485, 0.0696969696969697, 0.06666666666666667, 0.06666666666666667, 0.045454545454545456, 0.04242424242424243, 0.03636363636363636, 0.03333333333333333, 0.03333333333333333, 0.030303030303030304, 0.021212121212121213, 0.024242424242424242, 0.01818181818181818, 0.03333333333333333, 0.03636363636363636, 0.024242424242424242, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.906060606060606, 0.9181818181818182, 0.9424242424242424, 0.9090909090909091, 0.8939393939393939, 0.0030303030303030303, 0.03333333333333333, 0.01818181818181818, 0.20303030303030303, 0.01818181818181818, 0.015151515151515152, 0.015151515151515152, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.5060606060606061, 0.9363636363636364, 0.4212121212121212, 0.0030303030303030303, 0.00909090909090909, 0.03333333333333333, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.00909090909090909, 0.045454545454545456, 0.012121212121212121, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.8454545454545455, 0.8484848484848485, 0.8454545454545455, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.024242424242424242, 0.021212121212121213, 0.06363636363636363, 0.17272727272727273, 0.03636363636363636, 0.09696969696969697, 0.45151515151515154, 0.7878787878787878, 0.9212121212121213, 0.8454545454545455, 0.593939393939394, 0.10303030303030303, 0.07272727272727272, 0.01818181818181818, 0.01818181818181818, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.021212121212121213, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.015151515151515152, 0.8878787878787879, 0.9333333333333333, 0.8333333333333334, 0.02727272727272727, 0.09393939393939393, 0.048484848484848485, 0.2878787878787879, 0.9484848484848485, 0.5303030303030303, 0.18484848484848485, 0.021212121212121213, 0.01818181818181818, 0.015151515151515152, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.021212121212121213, 0.021212121212121213, 0.021212121212121213, 0.02727272727272727, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.021212121212121213, 0.021212121212121213, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.021212121212121213, 0.021212121212121213, 0.021212121212121213, 0.7151515151515152, 0.021212121212121213, 0.021212121212121213, 0.021212121212121213, 0.02727272727272727, 0.030303030303030304, 0.04242424242424243, 0.11212121212121212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3417.gap.json b/pfam_gap_rates/DUF3417.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..377fe6c982512ba4eafb96dc3ca69f9eeba816d6
--- /dev/null
+++ b/pfam_gap_rates/DUF3417.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3417", "n_seqs": 450, "length": 115, "gap_rates": [0.12, 0.09555555555555556, 0.08444444444444445, 0.08222222222222222, 0.07111111111111111, 0.035555555555555556, 0.022222222222222223, 0.017777777777777778, 0.013333333333333334, 0.008888888888888889, 0.008888888888888889, 0.008888888888888889, 0.008888888888888889, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.008888888888888889, 0.006666666666666667, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.0044444444444444444, 0.09333333333333334, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.008888888888888889, 0.011111111111111112, 0.008888888888888889, 0.008888888888888889, 0.008888888888888889, 0.011111111111111112, 0.008888888888888889, 0.008888888888888889, 0.008888888888888889, 0.006666666666666667, 0.011111111111111112, 0.006666666666666667, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0044444444444444444, 0.0044444444444444444, 0.7622222222222222, 0.2222222222222222, 0.2088888888888889, 0.19555555555555557, 0.20222222222222222, 0.20666666666666667, 0.2111111111111111, 0.20444444444444446, 0.8111111111111111, 0.9177777777777778, 0.9355555555555556, 0.8822222222222222, 0.7222222222222222, 0.13333333333333333, 0.042222222222222223, 0.0044444444444444444, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0022222222222222222, 0.0044444444444444444, 0.008888888888888889, 0.12222222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3426.gap.json b/pfam_gap_rates/DUF3426.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9f8c8bd355439ed4199f364c814812c21d36b24
--- /dev/null
+++ b/pfam_gap_rates/DUF3426.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3426", "n_seqs": 243, "length": 180, "gap_rates": [0.7983539094650206, 0.2839506172839506, 0.13991769547325103, 0.09876543209876543, 0.07407407407407407, 0.07407407407407407, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06584362139917696, 0.07407407407407407, 0.07818930041152264, 0.07818930041152264, 0.12757201646090535, 0.12345679012345678, 0.4074074074074074, 0.11522633744855967, 0.102880658436214, 0.07407407407407407, 0.07818930041152264, 0.06584362139917696, 0.06172839506172839, 0.06172839506172839, 0.05761316872427984, 0.05761316872427984, 0.05761316872427984, 0.06172839506172839, 0.06995884773662552, 0.07407407407407407, 0.9423868312757202, 0.18106995884773663, 0.1728395061728395, 0.13991769547325103, 0.13168724279835392, 0.10699588477366255, 0.10699588477366255, 0.102880658436214, 0.1522633744855967, 0.12757201646090535, 0.11522633744855967, 0.0823045267489712, 0.07818930041152264, 0.9423868312757202, 0.9135802469135802, 0.07818930041152264, 0.05761316872427984, 0.05761316872427984, 0.04526748971193416, 0.03292181069958848, 0.024691358024691357, 0.024691358024691357, 0.02880658436213992, 0.02880658436213992, 0.024691358024691357, 0.02880658436213992, 0.03292181069958848, 0.7037037037037037, 0.02880658436213992, 0.01646090534979424, 0.024691358024691357, 0.0205761316872428, 0.012345679012345678, 0.0205761316872428, 0.4609053497942387, 0.35802469135802467, 0.9300411522633745, 0.9423868312757202, 0.934156378600823, 0.9300411522633745, 0.012345679012345678, 0.00823045267489712, 0.00823045267489712, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00823045267489712, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00823045267489712, 0.00411522633744856, 0.00823045267489712, 0.00411522633744856, 0.8065843621399177, 0.8106995884773662, 0.8148148148148148, 0.8271604938271605, 0.8271604938271605, 0.8353909465020576, 0.8395061728395061, 0.8395061728395061, 0.831275720164609, 0.8271604938271605, 0.823045267489712, 0.8106995884773662, 0.8106995884773662, 0.8065843621399177, 0.024691358024691357, 0.02880658436213992, 0.0411522633744856, 0.06172839506172839, 0.06995884773662552, 0.07407407407407407, 0.06995884773662552, 0.8271604938271605, 0.7860082304526749, 0.1522633744855967, 0.1934156378600823, 0.22633744855967078, 0.2716049382716049, 0.18930041152263374, 0.7448559670781894, 0.8024691358024691, 0.9465020576131687, 0.7777777777777778, 0.7407407407407407, 0.23045267489711935, 0.11934156378600823, 0.08641975308641975, 0.053497942386831275, 0.05761316872427984, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.03292181069958848, 0.03292181069958848, 0.03292181069958848, 0.03292181069958848, 0.03292181069958848, 0.03292181069958848, 0.037037037037037035, 0.0411522633744856, 0.04526748971193416, 0.06584362139917696, 0.9135802469135802, 0.9465020576131687, 0.9382716049382716, 0.9094650205761317, 0.07407407407407407, 0.09876543209876543, 0.1111111111111111, 0.1111111111111111, 0.11934156378600823, 0.13168724279835392, 0.14814814814814814, 0.16049382716049382, 0.1728395061728395, 0.18930041152263374, 0.27983539094650206, 0.691358024691358], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3427.gap.json b/pfam_gap_rates/DUF3427.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bec1b1df0514fdfe60b48612221440cd417d942a
--- /dev/null
+++ b/pfam_gap_rates/DUF3427.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3453.gap.json b/pfam_gap_rates/DUF3453.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..292a30c595fe9fab5ff2e9b4b31e02aff976c37e
--- /dev/null
+++ b/pfam_gap_rates/DUF3453.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3456.gap.json b/pfam_gap_rates/DUF3456.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..525edf05f48f7898ded3fc8455be3c792f916282
--- /dev/null
+++ b/pfam_gap_rates/DUF3456.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3459.gap.json b/pfam_gap_rates/DUF3459.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bebba6f724929b9589dd787e9fae767eb3eebe1
--- /dev/null
+++ b/pfam_gap_rates/DUF3459.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3459", "n_seqs": 916, "length": 111, "gap_rates": [0.29366812227074235, 0.039301310043668124, 0.018558951965065504, 0.013100436681222707, 0.010917030567685589, 0.009825327510917031, 0.006550218340611353, 0.006550218340611353, 0.006550218340611353, 0.006550218340611353, 0.006550218340611353, 0.006550218340611353, 0.8624454148471615, 0.8384279475982532, 0.013100436681222707, 0.05458515283842795, 0.019650655021834062, 0.018558951965065504, 0.019650655021834062, 0.016375545851528384, 0.1648471615720524, 0.14301310043668122, 0.08842794759825327, 0.014192139737991267, 0.016375545851528384, 0.013100436681222707, 0.2827510917030568, 0.5283842794759825, 0.4334061135371179, 0.17903930131004367, 0.04475982532751092, 0.008733624454148471, 0.007641921397379912, 0.004366812227074236, 0.002183406113537118, 0.007641921397379912, 0.0032751091703056767, 0.001091703056768559, 0.0032751091703056767, 0.0032751091703056767, 0.2521834061135371, 0.9465065502183406, 0.9246724890829694, 0.3569868995633188, 0.2390829694323144, 0.20087336244541484, 0.021834061135371178, 0.009825327510917031, 0.017467248908296942, 0.006550218340611353, 0.001091703056768559, 0.001091703056768559, 0.002183406113537118, 0.002183406113537118, 0.0032751091703056767, 0.0032751091703056767, 0.0032751091703056767, 0.9432314410480349, 0.9268558951965066, 0.006550218340611353, 0.015283842794759825, 0.015283842794759825, 0.014192139737991267, 0.015283842794759825, 0.013100436681222707, 0.6844978165938864, 0.8679039301310044, 0.9475982532751092, 0.9104803493449781, 0.7663755458515283, 0.5960698689956332, 0.4465065502183406, 0.34934497816593885, 0.259825327510917, 0.1168122270742358, 0.05458515283842795, 0.055676855895196505, 0.060043668122270744, 0.06441048034934498, 0.07096069868995633, 0.07532751091703056, 0.07969432314410481, 0.08842794759825327, 0.09606986899563319, 0.0982532751091703, 0.11572052401746726, 0.13209606986899564, 0.2576419213973799, 0.3307860262008734, 0.38427947598253276, 0.767467248908297, 0.8853711790393013, 0.9224890829694323, 0.9443231441048034, 0.9366812227074236, 0.9050218340611353, 0.8417030567685589, 0.62117903930131, 0.47489082969432317, 0.21069868995633187, 0.20414847161572053, 0.20414847161572053, 0.212882096069869, 0.2183406113537118, 0.2368995633187773, 0.26965065502183405, 0.2849344978165939, 0.3231441048034934, 0.3624454148471616, 0.42903930131004364, 0.7467248908296943], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3485.gap.json b/pfam_gap_rates/DUF3485.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2dab515493d4651657a70b2c94ed9bab8e727dca
--- /dev/null
+++ b/pfam_gap_rates/DUF3485.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3485", "n_seqs": 212, "length": 233, "gap_rates": [0.8962264150943396, 0.42924528301886794, 0.2783018867924528, 0.1792452830188679, 0.14150943396226415, 0.11320754716981132, 0.10849056603773585, 0.10377358490566038, 0.09905660377358491, 0.09433962264150944, 0.09433962264150944, 0.08490566037735849, 0.08962264150943396, 0.9481132075471698, 0.09905660377358491, 0.09433962264150944, 0.09433962264150944, 0.08490566037735849, 0.08490566037735849, 0.08018867924528301, 0.08490566037735849, 0.08490566037735849, 0.08962264150943396, 0.09433962264150944, 0.15566037735849056, 0.1792452830188679, 0.22641509433962265, 0.7594339622641509, 0.9386792452830188, 0.8349056603773585, 0.7405660377358491, 0.2783018867924528, 0.18396226415094338, 0.15566037735849056, 0.14150943396226415, 0.6509433962264151, 0.0660377358490566, 0.05188679245283019, 0.05660377358490566, 0.07075471698113207, 0.06132075471698113, 0.06132075471698113, 0.05188679245283019, 0.04716981132075472, 0.04245283018867924, 0.03773584905660377, 0.9245283018867925, 0.41509433962264153, 0.12264150943396226, 0.08018867924528301, 0.0660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05188679245283019, 0.2688679245283019, 0.04716981132075472, 0.018867924528301886, 0.018867924528301886, 0.014150943396226415, 0.018867924528301886, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.009433962264150943, 0.8349056603773585, 0.8679245283018868, 0.8962264150943396, 0.9292452830188679, 0.8679245283018868, 0.8537735849056604, 0.8160377358490566, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.018867924528301886, 0.9386792452830188, 0.8679245283018868, 0.018867924528301886, 0.23113207547169812, 0.08490566037735849, 0.0047169811320754715, 0.014150943396226415, 0.0047169811320754715, 0.8254716981132075, 0.0047169811320754715, 0.0, 0.0, 0.0, 0.0, 0.02358490566037736, 0.02358490566037736, 0.014150943396226415, 0.03773584905660377, 0.03773584905660377, 0.02358490566037736, 0.05660377358490566, 0.04245283018867924, 0.0047169811320754715, 0.02358490566037736, 0.03773584905660377, 0.9481132075471698, 0.5424528301886793, 0.009433962264150943, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.05188679245283019, 0.014150943396226415, 0.009433962264150943, 0.8726415094339622, 0.8018867924528302, 0.014150943396226415, 0.014150943396226415, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.9386792452830188, 0.05188679245283019, 0.05660377358490566, 0.04245283018867924, 0.02830188679245283, 0.13679245283018868, 0.12264150943396226, 0.10377358490566038, 0.11320754716981132, 0.1509433962264151, 0.9433962264150944, 0.8537735849056604, 0.5330188679245284, 0.5283018867924528, 0.1509433962264151, 0.08018867924528301, 0.06132075471698113, 0.0660377358490566, 0.8679245283018868, 0.05660377358490566, 0.07547169811320754, 0.9433962264150944, 0.07075471698113207, 0.0660377358490566, 0.04245283018867924, 0.0330188679245283, 0.0330188679245283, 0.02358490566037736, 0.018867924528301886, 0.02358490566037736, 0.02358490566037736, 0.03773584905660377, 0.03773584905660377, 0.9386792452830188, 0.839622641509434, 0.02830188679245283, 0.02830188679245283, 0.0330188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.0330188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.03773584905660377, 0.0330188679245283, 0.03773584905660377, 0.04245283018867924, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.05660377358490566, 0.06132075471698113, 0.06132075471698113, 0.05660377358490566, 0.06132075471698113, 0.0660377358490566, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.07075471698113207, 0.0660377358490566, 0.07075471698113207, 0.08018867924528301, 0.07075471698113207, 0.07075471698113207, 0.07075471698113207, 0.07547169811320754, 0.08018867924528301, 0.08018867924528301, 0.07547169811320754, 0.07547169811320754, 0.08018867924528301, 0.08018867924528301, 0.08018867924528301, 0.08018867924528301, 0.09905660377358491, 0.1320754716981132, 0.1509433962264151, 0.42924528301886794, 0.7971698113207547, 0.6698113207547169, 0.1179245283018868, 0.10849056603773585, 0.10849056603773585, 0.10849056603773585, 0.11320754716981132, 0.1179245283018868, 0.1179245283018868, 0.1179245283018868, 0.12735849056603774, 0.1320754716981132, 0.13679245283018868, 0.16037735849056603, 0.18396226415094338, 0.2169811320754717, 0.24056603773584906, 0.29245283018867924, 0.3490566037735849, 0.42452830188679247, 0.6226415094339622, 0.8820754716981132], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF349.gap.json b/pfam_gap_rates/DUF349.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90282d6722a5f161245d1d5f72fdb85a6c24059d
--- /dev/null
+++ b/pfam_gap_rates/DUF349.gap.json
@@ -0,0 +1 @@
+{"family": "DUF349", "n_seqs": 1495, "length": 79, "gap_rates": [0.4528428093645485, 0.18127090301003346, 0.14381270903010032, 0.09832775919732442, 0.08160535117056857, 0.06555183946488294, 0.06220735785953177, 0.0548494983277592, 0.04749163879598662, 0.042140468227424746, 0.036120401337792644, 0.03076923076923077, 0.028093645484949834, 0.026755852842809364, 0.02274247491638796, 0.02274247491638796, 0.022073578595317726, 0.02140468227424749, 0.018729096989966554, 0.018729096989966554, 0.018729096989966554, 0.016053511705685617, 0.016053511705685617, 0.01471571906354515, 0.010702341137123745, 0.009364548494983277, 0.0026755852842809363, 0.0013377926421404682, 0.0006688963210702341, 0.0006688963210702341, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002006688963210702, 0.0, 0.0, 0.008695652173913044, 0.006020066889632107, 0.006688963210702341, 0.3712374581939799, 0.26153846153846155, 0.797324414715719, 0.8909698996655518, 0.8120401337792642, 0.7906354515050167, 0.06354515050167224, 0.049498327759197325, 0.0026755852842809363, 0.0013377926421404682, 0.0006688963210702341, 0.0006688963210702341, 0.0033444816053511705, 0.0033444816053511705, 0.0033444816053511705, 0.005351170568561873, 0.005351170568561873, 0.005351170568561873, 0.005351170568561873, 0.006688963210702341, 0.008695652173913044, 0.008695652173913044, 0.009364548494983277, 0.01137123745819398, 0.02274247491638796, 0.03678929765886288, 0.06354515050167224, 0.10501672240802676, 0.1331103678929766, 0.2180602006688963, 0.5618729096989966], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3502.gap.json b/pfam_gap_rates/DUF3502.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93839c838377e4b5b5729203d2d65ab5ecf6a446
--- /dev/null
+++ b/pfam_gap_rates/DUF3502.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3502", "n_seqs": 364, "length": 149, "gap_rates": [0.03296703296703297, 0.03021978021978022, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.0989010989010989, 0.024725274725274724, 0.04120879120879121, 0.9478021978021978, 0.8653846153846154, 0.07142857142857142, 0.08516483516483517, 0.04945054945054945, 0.03296703296703297, 0.1978021978021978, 0.027472527472527472, 0.027472527472527472, 0.0521978021978022, 0.18406593406593408, 0.15384615384615385, 0.5494505494505495, 0.6565934065934066, 0.9395604395604396, 0.6868131868131868, 0.5879120879120879, 0.4010989010989011, 0.038461538461538464, 0.0989010989010989, 0.10989010989010989, 0.11263736263736264, 0.019230769230769232, 0.7802197802197802, 0.9203296703296703, 0.8736263736263736, 0.5686813186813187, 0.019230769230769232, 0.03296703296703297, 0.019230769230769232, 0.046703296703296704, 0.019230769230769232, 0.016483516483516484, 0.8076923076923077, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.038461538461538464, 0.1565934065934066, 0.17032967032967034, 0.07967032967032966, 0.03571428571428571, 0.027472527472527472, 0.02197802197802198, 0.016483516483516484, 0.9258241758241759, 0.8681318681318682, 0.02197802197802198, 0.024725274725274724, 0.02197802197802198, 0.024725274725274724, 0.019230769230769232, 0.8461538461538461, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.027472527472527472, 0.02197802197802198, 0.9478021978021978, 0.027472527472527472, 0.019230769230769232, 0.008241758241758242, 0.005494505494505495, 0.9423076923076923, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0027472527472527475, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01098901098901099, 0.0, 0.0, 0.0, 0.005494505494505495, 0.0027472527472527475, 0.0027472527472527475, 0.7115384615384616, 0.005494505494505495, 0.013736263736263736, 0.0027472527472527475, 0.019230769230769232, 0.005494505494505495, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.03021978021978022, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.008241758241758242, 0.008241758241758242, 0.008241758241758242, 0.016483516483516484, 0.03021978021978022, 0.06043956043956044, 0.07967032967032966, 0.45054945054945056], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3513.gap.json b/pfam_gap_rates/DUF3513.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10f60a8ed15ad774f9133095a1893019a3193a6a
--- /dev/null
+++ b/pfam_gap_rates/DUF3513.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3523.gap.json b/pfam_gap_rates/DUF3523.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f6e74949e7682f301e7b456f31ece68abded8c6
--- /dev/null
+++ b/pfam_gap_rates/DUF3523.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3531.gap.json b/pfam_gap_rates/DUF3531.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6341000deabbbd216e968d3e9c64959c9b1da10f
--- /dev/null
+++ b/pfam_gap_rates/DUF3531.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3531", "n_seqs": 127, "length": 146, "gap_rates": [0.33858267716535434, 0.08661417322834646, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.031496062992125984, 0.03937007874015748, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.3937007874015748, 0.047244094488188976, 0.047244094488188976, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.05511811023622047, 0.047244094488188976, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.047244094488188976, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.05511811023622047, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.11023622047244094, 0.5905511811023622, 0.11023622047244094, 0.11023622047244094, 0.11023622047244094, 0.11023622047244094, 0.11811023622047244, 0.11811023622047244, 0.14960629921259844, 0.2125984251968504, 0.3464566929133858, 0.8188976377952756], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3533.gap.json b/pfam_gap_rates/DUF3533.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bf2350f2d6916824b16383a57bec14ad9450d77
--- /dev/null
+++ b/pfam_gap_rates/DUF3533.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3558.gap.json b/pfam_gap_rates/DUF3558.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de45c412c31dc32ee68d11098697444711c09eae
--- /dev/null
+++ b/pfam_gap_rates/DUF3558.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3611.gap.json b/pfam_gap_rates/DUF3611.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d6f962e84dfc479d1da99697cb2eed56587644d
--- /dev/null
+++ b/pfam_gap_rates/DUF3611.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3675.gap.json b/pfam_gap_rates/DUF3675.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f7c3477603db66c84a2a1a613821a043bafe6b7
--- /dev/null
+++ b/pfam_gap_rates/DUF3675.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3675", "n_seqs": 214, "length": 123, "gap_rates": [0.205607476635514, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.08878504672897196, 0.9439252336448598, 0.24766355140186916, 0.11682242990654206, 0.11214953271028037, 0.1261682242990654, 0.11682242990654206, 0.08878504672897196, 0.10747663551401869, 0.08411214953271028, 0.08411214953271028, 0.07476635514018691, 0.06542056074766354, 0.056074766355140186, 0.04205607476635514, 0.04672897196261682, 0.056074766355140186, 0.037383177570093455, 0.03271028037383177, 0.06074766355140187, 0.14485981308411214, 0.16822429906542055, 0.616822429906542, 0.49065420560747663, 0.14018691588785046, 0.102803738317757, 0.09813084112149532, 0.09345794392523364, 0.0794392523364486, 0.16355140186915887, 0.11214953271028037, 0.11682242990654206, 0.09345794392523364, 0.07009345794392523, 0.0514018691588785, 0.028037383177570093, 0.018691588785046728, 0.1308411214953271, 0.11214953271028037, 0.07476635514018691, 0.10747663551401869, 0.12149532710280374, 0.11214953271028037, 0.09345794392523364, 0.09345794392523364, 0.1588785046728972, 0.037383177570093455, 0.08411214953271028, 0.0514018691588785, 0.04672897196261682, 0.04672897196261682, 0.04205607476635514, 0.07009345794392523, 0.04672897196261682, 0.04205607476635514, 0.028037383177570093, 0.02336448598130841, 0.9439252336448598, 0.02336448598130841, 0.02336448598130841, 0.018691588785046728, 0.018691588785046728, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.018691588785046728, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.02336448598130841, 0.028037383177570093, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.04205607476635514, 0.04672897196261682, 0.0794392523364486, 0.037383177570093455, 0.9392523364485982, 0.705607476635514, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.037383177570093455, 0.0514018691588785, 0.09345794392523364, 0.11214953271028037, 0.0794392523364486, 0.0794392523364486, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09813084112149532, 0.10747663551401869, 0.10747663551401869, 0.11682242990654206, 0.308411214953271], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3692.gap.json b/pfam_gap_rates/DUF3692.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..805c08162a8c6564bcb5e233f326add7840ffc00
--- /dev/null
+++ b/pfam_gap_rates/DUF3692.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3692", "n_seqs": 155, "length": 149, "gap_rates": [0.41935483870967744, 0.05806451612903226, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0, 0.0, 0.012903225806451613, 0.01935483870967742, 0.05161290322580645, 0.05806451612903226, 0.01935483870967742, 0.03870967741935484, 0.11612903225806452, 0.1032258064516129, 0.33548387096774196, 0.9290322580645162, 0.9161290322580645, 0.2645161290322581, 0.03870967741935484, 0.03870967741935484, 0.04516129032258064, 0.04516129032258064, 0.05161290322580645, 0.06451612903225806, 0.11612903225806452, 0.11612903225806452, 0.21935483870967742, 0.3161290322580645, 0.2903225806451613, 0.25806451612903225, 0.2645161290322581, 0.2709677419354839, 0.25806451612903225, 0.23870967741935484, 0.25806451612903225, 0.2838709677419355, 0.567741935483871, 0.5806451612903226, 0.6193548387096774, 0.6580645161290323, 0.7161290322580646, 0.7612903225806451, 0.7935483870967742, 0.8129032258064516, 0.8193548387096774, 0.8774193548387097, 0.9032258064516129, 0.9290322580645162, 0.9419354838709677, 0.9161290322580645, 0.8903225806451613, 0.8580645161290322, 0.8129032258064516, 0.8064516129032258, 0.7806451612903226, 0.7354838709677419, 0.6838709677419355, 0.6387096774193548, 0.5935483870967742, 0.5806451612903226, 0.5419354838709678, 0.38064516129032255, 0.4064516129032258, 0.36129032258064514, 0.3032258064516129, 0.9483870967741935, 0.9483870967741935, 0.9483870967741935, 0.21935483870967742, 0.2129032258064516, 0.2, 0.18064516129032257, 0.16774193548387098, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.1870967741935484, 0.1935483870967742, 0.2903225806451613, 0.9161290322580645, 0.9419354838709677, 0.8903225806451613, 0.5096774193548387, 0.432258064516129, 0.34838709677419355, 0.9032258064516129, 0.8709677419354839, 0.3032258064516129, 0.3032258064516129, 0.22580645161290322, 0.22580645161290322, 0.21935483870967742, 0.9483870967741935, 0.9483870967741935, 0.9483870967741935, 0.9354838709677419, 0.23870967741935484, 0.23870967741935484, 0.23870967741935484, 0.24516129032258063, 0.25806451612903225, 0.25806451612903225, 0.2645161290322581, 0.2709677419354839, 0.2838709677419355, 0.2903225806451613, 0.3225806451612903, 0.3870967741935484, 0.5548387096774193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3727.gap.json b/pfam_gap_rates/DUF3727.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19acad32e5798ad67db6e50800a2a3226b9cb627
--- /dev/null
+++ b/pfam_gap_rates/DUF3727.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3727", "n_seqs": 101, "length": 104, "gap_rates": [0.2079207920792079, 0.09900990099009901, 0.0891089108910891, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.3564356435643564, 0.9306930693069307, 0.0594059405940594, 0.039603960396039604, 0.039603960396039604, 0.0297029702970297, 0.039603960396039604, 0.04950495049504951, 0.0297029702970297, 0.04950495049504951, 0.019801980198019802, 0.019801980198019802, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0297029702970297, 0.0594059405940594, 0.7821782178217822, 0.6435643564356436, 0.31683168316831684, 0.22772277227722773, 0.19801980198019803, 0.0891089108910891, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.31683168316831684, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.039603960396039604, 0.1188118811881188, 0.04950495049504951, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.06930693069306931, 0.19801980198019803, 0.09900990099009901, 0.3465346534653465, 0.3564356435643564, 0.10891089108910891, 0.10891089108910891, 0.9207920792079208, 0.9207920792079208, 0.9207920792079208, 0.10891089108910891, 0.1188118811881188, 0.12871287128712872, 0.12871287128712872, 0.13861386138613863, 0.13861386138613863, 0.16831683168316833, 0.24752475247524752, 0.8910891089108911], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3737.gap.json b/pfam_gap_rates/DUF3737.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c54ccfcd2bc55ed0333366cd93349dabd4f98227
--- /dev/null
+++ b/pfam_gap_rates/DUF3737.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF3741.gap.json b/pfam_gap_rates/DUF3741.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51bc47e35dbd1b64967ab89bdd40db5e2bb37908
--- /dev/null
+++ b/pfam_gap_rates/DUF3741.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3791.gap.json b/pfam_gap_rates/DUF3791.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d81c0752b713daa69a524e4ebaf58f094ff55f11
--- /dev/null
+++ b/pfam_gap_rates/DUF3791.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3808.gap.json b/pfam_gap_rates/DUF3808.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22e146f781d8d5e06fcadc6f4f4d24134b12008c
--- /dev/null
+++ b/pfam_gap_rates/DUF3808.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3817.gap.json b/pfam_gap_rates/DUF3817.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6653154c836883a6dfe2871be034bef2f8ba1c7
--- /dev/null
+++ b/pfam_gap_rates/DUF3817.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3817", "n_seqs": 505, "length": 116, "gap_rates": [0.6435643564356436, 0.21188118811881188, 0.05742574257425743, 0.023762376237623763, 0.023762376237623763, 0.019801980198019802, 0.011881188118811881, 0.009900990099009901, 0.009900990099009901, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.005940594059405941, 0.005940594059405941, 0.005940594059405941, 0.005940594059405941, 0.005940594059405941, 0.005940594059405941, 0.6178217821782178, 0.005940594059405941, 0.007920792079207921, 0.005940594059405941, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0039603960396039604, 0.0019801980198019802, 0.007920792079207921, 0.02178217821782178, 0.5762376237623762, 0.7881188118811882, 0.8554455445544554, 0.8792079207920792, 0.900990099009901, 0.906930693069307, 0.9108910891089109, 0.9128712871287129, 0.9148514851485149, 0.9148514851485149, 0.9207920792079208, 0.9326732673267327, 0.9465346534653465, 0.9485148514851485, 0.9465346534653465, 0.9425742574257425, 0.9326732673267327, 0.9148514851485149, 0.9148514851485149, 0.9148514851485149, 0.9108910891089109, 0.9089108910891089, 0.902970297029703, 0.8930693069306931, 0.8653465346534653, 0.8376237623762376, 0.7346534653465346, 0.09306930693069307, 0.009900990099009901, 0.0039603960396039604, 0.0019801980198019802, 0.0019801980198019802, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0039603960396039604, 0.0039603960396039604, 0.0039603960396039604, 0.0039603960396039604, 0.0019801980198019802, 0.005940594059405941, 0.007920792079207921, 0.005940594059405941, 0.005940594059405941, 0.005940594059405941, 0.005940594059405941, 0.005940594059405941, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.009900990099009901, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.009900990099009901, 0.013861386138613862, 0.02178217821782178, 0.02574257425742574, 0.04950495049504951, 0.2594059405940594, 0.6257425742574257], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF382.gap.json b/pfam_gap_rates/DUF382.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9d6f54aed1da02060c7f3c425cee760437c2cc8
--- /dev/null
+++ b/pfam_gap_rates/DUF382.gap.json
@@ -0,0 +1 @@
+{"family": "DUF382", "n_seqs": 359, "length": 127, "gap_rates": [0.7910863509749304, 0.13649025069637882, 0.09192200557103064, 0.08913649025069638, 0.08356545961002786, 0.0807799442896936, 0.0807799442896936, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07520891364902507, 0.07799442896935933, 0.07799442896935933, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.06963788300835655, 0.06685236768802229, 0.06406685236768803, 0.06406685236768803, 0.06406685236768803, 0.06406685236768803, 0.052924791086350974, 0.06963788300835655, 0.07242339832869081, 0.07799442896935933, 0.08356545961002786, 0.0807799442896936, 0.06963788300835655, 0.06963788300835655, 0.06685236768802229, 0.06685236768802229, 0.06685236768802229, 0.06685236768802229, 0.06963788300835655, 0.06406685236768803, 0.06963788300835655, 0.06685236768802229, 0.06963788300835655, 0.06963788300835655, 0.06406685236768803, 0.06685236768802229, 0.07242339832869081, 0.06963788300835655, 0.07242339832869081, 0.06128133704735376, 0.06128133704735376, 0.06128133704735376, 0.06128133704735376, 0.10584958217270195, 0.11142061281337047, 0.09192200557103064, 0.08913649025069638, 0.0807799442896936, 0.07799442896935933, 0.07799442896935933, 0.08356545961002786, 0.08356545961002786, 0.0807799442896936, 0.0807799442896936, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07799442896935933, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07242339832869081, 0.07242339832869081, 0.07520891364902507, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.08356545961002786, 0.08356545961002786, 0.08635097493036212, 0.08913649025069638, 0.09749303621169916, 0.0947075208913649, 0.09192200557103064, 0.09192200557103064, 0.09192200557103064, 0.09192200557103064, 0.09192200557103064, 0.09192200557103064, 0.09192200557103064, 0.09192200557103064, 0.09192200557103064, 0.09192200557103064, 0.0947075208913649, 0.09749303621169916, 0.09749303621169916, 0.10027855153203342, 0.10863509749303621, 0.1392757660167131], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3847.gap.json b/pfam_gap_rates/DUF3847.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d9a0d6944035281315a5b54b40d01cfd0d102fa
--- /dev/null
+++ b/pfam_gap_rates/DUF3847.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3990.gap.json b/pfam_gap_rates/DUF3990.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef307bda7dcffa3cdae9591653d018f70dc78bc8
--- /dev/null
+++ b/pfam_gap_rates/DUF3990.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4007.gap.json b/pfam_gap_rates/DUF4007.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3446b0e8781e25815d85d7882f4bfcff007a980
--- /dev/null
+++ b/pfam_gap_rates/DUF4007.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4031.gap.json b/pfam_gap_rates/DUF4031.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..290de648d93b61a18b6240cb2bdecd81983d6dd0
--- /dev/null
+++ b/pfam_gap_rates/DUF4031.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4031", "n_seqs": 138, "length": 81, "gap_rates": [0.18115942028985507, 0.057971014492753624, 0.050724637681159424, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.036231884057971016, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.014492753623188406, 0.014492753623188406, 0.0, 0.0, 0.0, 0.0, 0.21739130434782608, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007246376811594203, 0.0, 0.0, 0.0, 0.927536231884058, 0.8333333333333334, 0.7608695652173914, 0.7608695652173914, 0.7681159420289855, 0.7681159420289855, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.036231884057971016, 0.09420289855072464, 0.2898550724637681], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4032.gap.json b/pfam_gap_rates/DUF4032.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0b3cebda3725698f3c2df2ffe3828ac2f93750f
--- /dev/null
+++ b/pfam_gap_rates/DUF4032.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4038.gap.json b/pfam_gap_rates/DUF4038.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..224c7081e057355c774eb7ad8d0af2c2045006cf
--- /dev/null
+++ b/pfam_gap_rates/DUF4038.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4070.gap.json b/pfam_gap_rates/DUF4070.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b7f3cb2b6ab3ba9f6551be7cc3beebcf34a7200
--- /dev/null
+++ b/pfam_gap_rates/DUF4070.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4110.gap.json b/pfam_gap_rates/DUF4110.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b89a5a657a19cd567b0125eb8d0f6f33f87c3f34
--- /dev/null
+++ b/pfam_gap_rates/DUF4110.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4110", "n_seqs": 193, "length": 97, "gap_rates": [0.49222797927461137, 0.29533678756476683, 0.14507772020725387, 0.08290155440414508, 0.07253886010362694, 0.06217616580310881, 0.05699481865284974, 0.04145077720207254, 0.03626943005181347, 0.03626943005181347, 0.02072538860103627, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.32642487046632124, 0.44041450777202074, 0.5699481865284974, 0.5595854922279793, 0.5595854922279793, 0.5803108808290155, 0.7305699481865285, 0.9326424870466321, 0.6113989637305699, 0.031088082901554404, 0.025906735751295335, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.015544041450777202, 0.015544041450777202, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.015544041450777202, 0.02072538860103627, 0.02072538860103627, 0.47668393782383417, 0.48186528497409326, 0.48704663212435234, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.05181347150259067, 0.8601036269430051, 0.10362694300518134, 0.17098445595854922, 0.17098445595854922, 0.19689119170984457, 0.20207253886010362, 0.22797927461139897, 0.22797927461139897, 0.22279792746113988, 0.24352331606217617, 0.2538860103626943, 0.26424870466321243, 0.2849740932642487, 0.29533678756476683, 0.31088082901554404, 0.33678756476683935, 0.3626943005181347, 0.5181347150259067, 0.7772020725388601], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4123.gap.json b/pfam_gap_rates/DUF4123.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0e318afd541f627e3d0b72f2828fedfce43d604
--- /dev/null
+++ b/pfam_gap_rates/DUF4123.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4123", "n_seqs": 161, "length": 146, "gap_rates": [0.5031055900621118, 0.2236024844720497, 0.15527950310559005, 0.13664596273291926, 0.13664596273291926, 0.13664596273291926, 0.13664596273291926, 0.9440993788819876, 0.8944099378881988, 0.16770186335403728, 0.14906832298136646, 0.14285714285714285, 0.13664596273291926, 0.13664596273291926, 0.13043478260869565, 0.11801242236024845, 0.12422360248447205, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.12422360248447205, 0.14285714285714285, 0.13043478260869565, 0.18633540372670807, 0.18012422360248448, 0.515527950310559, 0.5279503105590062, 0.9192546583850931, 0.9006211180124224, 0.10559006211180125, 0.08695652173913043, 0.08074534161490683, 0.9440993788819876, 0.08074534161490683, 0.07453416149068323, 0.07453416149068323, 0.08695652173913043, 0.08695652173913043, 0.08074534161490683, 0.08074534161490683, 0.09937888198757763, 0.06832298136645963, 0.055900621118012424, 0.055900621118012424, 0.043478260869565216, 0.037267080745341616, 0.031055900621118012, 0.024844720496894408, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.11801242236024845, 0.08074534161490683, 0.06832298136645963, 0.08695652173913043, 0.09316770186335403, 0.12422360248447205, 0.13664596273291926, 0.14906832298136646, 0.024844720496894408, 0.09937888198757763, 0.391304347826087, 0.5527950310559007, 0.6894409937888198, 0.8136645962732919, 0.8633540372670807, 0.906832298136646, 0.9254658385093167, 0.937888198757764, 0.9440993788819876, 0.937888198757764, 0.9130434782608695, 0.8757763975155279, 0.8385093167701864, 0.7267080745341615, 0.6273291925465838, 0.4658385093167702, 0.16149068322981366, 0.07453416149068323, 0.018633540372670808, 0.031055900621118012, 0.018633540372670808, 0.018633540372670808, 0.012422360248447204, 0.024844720496894408, 0.9130434782608695, 0.30434782608695654, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.018633540372670808, 0.8944099378881988, 0.11180124223602485, 0.8944099378881988, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.031055900621118012, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.031055900621118012, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.055900621118012424, 0.043478260869565216, 0.049689440993788817, 0.049689440993788817, 0.062111801242236024, 0.11180124223602485, 0.14285714285714285, 0.17391304347826086, 0.19254658385093168, 0.2111801242236025, 0.2608695652173913, 0.36024844720496896, 0.5962732919254659, 0.8819875776397516], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4126.gap.json b/pfam_gap_rates/DUF4126.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06040581a871d3194f0604a281fff665a16fa23a
--- /dev/null
+++ b/pfam_gap_rates/DUF4126.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4126", "n_seqs": 318, "length": 193, "gap_rates": [0.5062893081761006, 0.20125786163522014, 0.10377358490566038, 0.06289308176100629, 0.04716981132075472, 0.03773584905660377, 0.031446540880503145, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.025157232704402517, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.018867924528301886, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.0220125786163522, 0.7578616352201258, 0.0440251572327044, 0.02830188679245283, 0.02830188679245283, 0.949685534591195, 0.0220125786163522, 0.040880503144654086, 0.06918238993710692, 0.8773584905660378, 0.07861635220125786, 0.059748427672955975, 0.03773584905660377, 0.015723270440251572, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.018867924528301886, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.0880503144654088, 0.1069182389937107, 0.839622641509434, 0.9119496855345912, 0.9339622641509434, 0.8710691823899371, 0.8238993710691824, 0.710691823899371, 0.8962264150943396, 0.940251572327044, 0.9025157232704403, 0.8836477987421384, 0.6729559748427673, 0.6163522012578616, 0.2169811320754717, 0.09119496855345911, 0.05345911949685535, 0.05345911949685535, 0.031446540880503145, 0.0220125786163522, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.015723270440251572, 0.0220125786163522, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.012578616352201259, 0.012578616352201259, 0.009433962264150943, 0.015723270440251572, 0.015723270440251572, 0.1289308176100629, 0.1320754716981132, 0.12578616352201258, 0.12578616352201258, 0.12264150943396226, 0.1289308176100629, 0.20125786163522014, 0.1792452830188679, 0.16666666666666666, 0.1509433962264151, 0.02830188679245283, 0.0440251572327044, 0.03459119496855346, 0.025157232704402517, 0.0220125786163522, 0.025157232704402517, 0.018867924528301886, 0.8805031446540881, 0.8836477987421384, 0.8836477987421384, 0.8836477987421384, 0.8710691823899371, 0.031446540880503145, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.0220125786163522, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.0220125786163522, 0.03459119496855346, 0.05345911949685535, 0.05345911949685535, 0.05660377358490566, 0.06289308176100629, 0.07232704402515723, 0.09119496855345911, 0.10377358490566038, 0.11006289308176101, 0.11949685534591195, 0.11949685534591195, 0.11949685534591195, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.12578616352201258, 0.12578616352201258, 0.12578616352201258, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.12578616352201258, 0.14150943396226415, 0.17295597484276728, 0.2169811320754717, 0.3836477987421384, 0.5691823899371069, 0.8867924528301887], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4139.gap.json b/pfam_gap_rates/DUF4139.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0824c6d4ef1247ddfbdd2836c2506733974028bf
--- /dev/null
+++ b/pfam_gap_rates/DUF4139.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4140.gap.json b/pfam_gap_rates/DUF4140.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27e89c31bea0b6d707f5e35ead33100ad2999a7c
--- /dev/null
+++ b/pfam_gap_rates/DUF4140.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4140", "n_seqs": 361, "length": 134, "gap_rates": [0.12188365650969529, 0.07202216066481995, 0.05263157894736842, 0.05263157894736842, 0.038781163434903045, 0.0332409972299169, 0.0332409972299169, 0.9418282548476454, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.8476454293628809, 0.05263157894736842, 0.06925207756232687, 0.0332409972299169, 0.019390581717451522, 0.019390581717451522, 0.024930747922437674, 0.01662049861495845, 0.01662049861495845, 0.019390581717451522, 0.024930747922437674, 0.024930747922437674, 0.05263157894736842, 0.013850415512465374, 0.008310249307479225, 0.002770083102493075, 0.0110803324099723, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.008310249307479225, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.9390581717451524, 0.9085872576177285, 0.002770083102493075, 0.002770083102493075, 0.00554016620498615, 0.04986149584487535, 0.9058171745152355, 0.8005540166204986, 0.013850415512465374, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.00554016620498615, 0.00554016620498615, 0.00554016620498615, 0.00554016620498615, 0.008310249307479225, 0.024930747922437674, 0.01662049861495845, 0.013850415512465374, 0.0110803324099723, 0.0110803324099723, 0.0110803324099723, 0.013850415512465374, 0.01662049861495845, 0.06371191135734072, 0.5844875346260388, 0.7423822714681441, 0.7839335180055401, 0.7977839335180056, 0.8116343490304709, 0.8421052631578947, 0.8421052631578947, 0.8421052631578947, 0.8448753462603878, 0.853185595567867, 0.8614958448753463, 0.8781163434903048, 0.8919667590027701, 0.9335180055401662, 0.9445983379501385, 0.9168975069252078, 0.8836565096952909, 0.8753462603878116, 0.8559556786703602, 0.8476454293628809, 0.8421052631578947, 0.8421052631578947, 0.8421052631578947, 0.8310249307479224, 0.8060941828254847, 0.7922437673130194, 0.7811634349030471, 0.7063711911357341, 0.5290858725761773, 0.14127423822714683, 0.814404432132964, 0.060941828254847646, 0.0332409972299169, 0.027700831024930747, 0.0221606648199446, 0.01662049861495845, 0.01662049861495845, 0.019390581717451522, 0.01662049861495845, 0.01662049861495845, 0.01662049861495845, 0.01662049861495845, 0.01662049861495845, 0.019390581717451522, 0.019390581717451522, 0.01662049861495845, 0.01662049861495845, 0.019390581717451522, 0.030470914127423823, 0.0332409972299169, 0.036011080332409975, 0.038781163434903045, 0.04986149584487535, 0.05817174515235457, 0.08310249307479224, 0.09418282548476455, 0.14127423822714683, 0.15512465373961218, 0.20221606648199447, 0.2520775623268698, 0.31301939058171746, 0.39058171745152354, 0.5789473684210527], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4148.gap.json b/pfam_gap_rates/DUF4148.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e832a10e8b716e8eda4bc9577f866bdce556c8e
--- /dev/null
+++ b/pfam_gap_rates/DUF4148.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4148", "n_seqs": 232, "length": 82, "gap_rates": [0.3146551724137931, 0.3103448275862069, 0.8879310344827587, 0.36637931034482757, 0.43103448275862066, 0.28879310344827586, 0.33620689655172414, 0.22844827586206898, 0.21551724137931033, 0.1810344827586207, 0.16810344827586207, 0.16379310344827586, 0.16379310344827586, 0.9396551724137931, 0.1724137931034483, 0.16379310344827586, 0.15948275862068967, 0.15517241379310345, 0.15086206896551724, 0.14224137931034483, 0.15086206896551724, 0.15517241379310345, 0.1336206896551724, 0.4051724137931034, 0.5, 0.5431034482758621, 0.625, 0.6896551724137931, 0.7413793103448276, 0.7758620689655172, 0.8189655172413793, 0.8836206896551724, 0.9051724137931034, 0.9181034482758621, 0.9224137931034483, 0.9137931034482759, 0.896551724137931, 0.853448275862069, 0.7974137931034483, 0.7586206896551724, 0.7112068965517241, 0.6336206896551724, 0.5818965517241379, 0.5258620689655172, 0.4827586206896552, 0.29310344827586204, 0.1896551724137931, 0.14655172413793102, 0.03017241379310345, 0.01293103448275862, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004310344827586207, 0.004310344827586207, 0.01293103448275862, 0.01293103448275862, 0.01293103448275862, 0.017241379310344827, 0.017241379310344827, 0.021551724137931036, 0.03879310344827586, 0.9396551724137931, 0.04741379310344827, 0.07758620689655173, 0.12931034482758622, 0.17672413793103448, 0.8620689655172413, 0.7025862068965517, 0.24568965517241378, 0.27155172413793105, 0.33620689655172414, 0.3577586206896552, 0.36637931034482757, 0.38362068965517243], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4150.gap.json b/pfam_gap_rates/DUF4150.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..398c0d96aaabe331666c444e9f5baa517fb49068
--- /dev/null
+++ b/pfam_gap_rates/DUF4150.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4150", "n_seqs": 162, "length": 118, "gap_rates": [0.7962962962962963, 0.3333333333333333, 0.15432098765432098, 0.09259259259259259, 0.05555555555555555, 0.043209876543209874, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.08024691358024691, 0.17901234567901234, 0.29012345679012347, 0.25308641975308643, 0.7839506172839507, 0.8580246913580247, 0.8580246913580247, 0.7407407407407407, 0.024691358024691357, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.9382716049382716, 0.006172839506172839, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.018518518518518517, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.7222222222222222, 0.012345679012345678, 0.006172839506172839, 0.006172839506172839, 0.006172839506172839, 0.006172839506172839, 0.006172839506172839, 0.006172839506172839, 0.006172839506172839, 0.024691358024691357, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.030864197530864196, 0.030864197530864196, 0.037037037037037035, 0.018518518518518517, 0.012345679012345678, 0.8209876543209876, 0.9382716049382716, 0.7407407407407407, 0.043209876543209874, 0.043209876543209874, 0.043209876543209874, 0.043209876543209874, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.9320987654320988, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.030864197530864196, 0.15432098765432098, 0.20987654320987653, 0.25925925925925924, 0.3333333333333333, 0.6172839506172839], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4203.gap.json b/pfam_gap_rates/DUF4203.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33fc3f7347a6cf8991eb881b96d27c51869a897c
--- /dev/null
+++ b/pfam_gap_rates/DUF4203.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4203", "n_seqs": 400, "length": 240, "gap_rates": [0.605, 0.3525, 0.28, 0.21, 0.1775, 0.165, 0.1475, 0.1475, 0.1475, 0.145, 0.145, 0.145, 0.1425, 0.1425, 0.145, 0.1375, 0.1325, 0.13, 0.13, 0.13, 0.1275, 0.1275, 0.1275, 0.1225, 0.1075, 0.105, 0.1, 0.0975, 0.0975, 0.095, 0.0925, 0.0925, 0.09, 0.0875, 0.085, 0.085, 0.085, 0.085, 0.085, 0.085, 0.085, 0.0925, 0.095, 0.0975, 0.2325, 0.2725, 0.29, 0.3875, 0.7475, 0.8575, 0.87, 0.8525, 0.545, 0.155, 0.1375, 0.1125, 0.095, 0.075, 0.0675, 0.065, 0.06, 0.0525, 0.05, 0.05, 0.0475, 0.0475, 0.045, 0.045, 0.045, 0.045, 0.045, 0.045, 0.045, 0.045, 0.045, 0.115, 0.91, 0.0525, 0.04, 0.0425, 0.0475, 0.0475, 0.0425, 0.0425, 0.0425, 0.0425, 0.0425, 0.0425, 0.0425, 0.0425, 0.9, 0.05, 0.05, 0.05, 0.05, 0.05, 0.055, 0.055, 0.05, 0.0475, 0.0475, 0.0475, 0.0475, 0.0475, 0.0475, 0.4125, 0.28, 0.2475, 0.13, 0.105, 0.0925, 0.1175, 0.095, 0.095, 0.0775, 0.1725, 0.1225, 0.1175, 0.065, 0.7875, 0.91, 0.9175, 0.93, 0.9175, 0.8025, 0.6825, 0.4525, 0.43, 0.06, 0.045, 0.045, 0.045, 0.045, 0.045, 0.045, 0.045, 0.0475, 0.0475, 0.0475, 0.0475, 0.0475, 0.0475, 0.05, 0.7575, 0.7375, 0.0625, 0.0425, 0.0425, 0.035, 0.035, 0.035, 0.0375, 0.0375, 0.0375, 0.0375, 0.035, 0.035, 0.035, 0.035, 0.035, 0.035, 0.0375, 0.0425, 0.045, 0.0525, 0.0625, 0.0725, 0.075, 0.075, 0.0775, 0.08, 0.0825, 0.0925, 0.2425, 0.215, 0.1975, 0.2475, 0.2525, 0.2375, 0.655, 0.72, 0.7325, 0.8425, 0.7275, 0.6925, 0.605, 0.235, 0.255, 0.23, 0.235, 0.255, 0.27, 0.27, 0.325, 0.785, 0.82, 0.875, 0.81, 0.765, 0.49, 0.4675, 0.4025, 0.1725, 0.155, 0.1425, 0.135, 0.135, 0.1425, 0.125, 0.855, 0.8775, 0.8925, 0.9125, 0.93, 0.9325, 0.915, 0.9075, 0.8775, 0.8725, 0.85, 0.1225, 0.125, 0.1275, 0.13, 0.13, 0.1325, 0.14, 0.1425, 0.145, 0.145, 0.145, 0.1525, 0.1625, 0.165, 0.17, 0.1725, 0.1725, 0.175, 0.1825, 0.39], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4205.gap.json b/pfam_gap_rates/DUF4205.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ca9e39c30656ec762e677e01bb2111884b9b7e3
--- /dev/null
+++ b/pfam_gap_rates/DUF4205.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4205", "n_seqs": 293, "length": 409, "gap_rates": [0.7542662116040956, 0.7064846416382252, 0.590443686006826, 0.5802047781569966, 0.5733788395904437, 0.5699658703071673, 0.5665529010238908, 0.5631399317406144, 0.5563139931740614, 0.5597269624573379, 0.5426621160409556, 0.5221843003412969, 0.8361774744027304, 0.4880546075085324, 0.42662116040955633, 0.378839590443686, 0.36177474402730375, 0.5699658703071673, 0.3583617747440273, 0.3515358361774744, 0.3447098976109215, 0.3378839590443686, 0.3378839590443686, 0.3378839590443686, 0.33447098976109213, 0.3310580204778157, 0.40273037542662116, 0.8156996587030717, 0.5221843003412969, 0.47440273037542663, 0.36860068259385664, 0.3242320819112628, 0.29692832764505117, 0.2935153583617747, 0.28668941979522183, 0.28668941979522183, 0.2832764505119454, 0.2832764505119454, 0.27986348122866894, 0.27986348122866894, 0.27986348122866894, 0.27986348122866894, 0.27986348122866894, 0.27986348122866894, 0.2832764505119454, 0.2832764505119454, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4209.gap.json b/pfam_gap_rates/DUF4209.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4f4db171d8e1ddc1feca3e8153ad0c871cf5039
--- /dev/null
+++ b/pfam_gap_rates/DUF4209.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4209", "n_seqs": 104, "length": 97, "gap_rates": [0.5, 0.36538461538461536, 0.34615384615384615, 0.33653846153846156, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.2980769230769231, 0.28846153846153844, 0.375, 0.3269230769230769, 0.33653846153846156, 0.34615384615384615, 0.3557692307692308, 0.4807692307692308, 0.47115384615384615, 0.4519230769230769, 0.4326923076923077, 0.375, 0.34615384615384615, 0.28846153846153844, 0.6346153846153846, 0.9326923076923077, 0.6826923076923077, 0.6153846153846154, 0.09615384615384616, 0.08653846153846154, 0.08653846153846154, 0.08653846153846154, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08653846153846154, 0.9423076923076923, 0.08653846153846154, 0.07692307692307693, 0.0673076923076923, 0.07692307692307693, 0.0673076923076923, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.9423076923076923, 0.9423076923076923, 0.9423076923076923, 0.057692307692307696, 0.04807692307692308, 0.038461538461538464, 0.038461538461538464, 0.028846153846153848, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.0, 0.0, 0.11538461538461539, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.028846153846153848, 0.038461538461538464, 0.057692307692307696, 0.04807692307692308, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.0673076923076923, 0.0673076923076923, 0.0673076923076923, 0.07692307692307693, 0.10576923076923077, 0.1346153846153846, 0.22115384615384615, 0.4230769230769231, 0.75], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4215.gap.json b/pfam_gap_rates/DUF4215.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a08ba46ccfe3e7f3636ce00c7b257295e7062b31
--- /dev/null
+++ b/pfam_gap_rates/DUF4215.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4215", "n_seqs": 1519, "length": 53, "gap_rates": [0.532587228439763, 0.4897959183673469, 0.4121132323897301, 0.35813034891375906, 0.34430546412113233, 0.32982225148123767, 0.9058591178406846, 0.8209348255431205, 0.29624753127057274, 0.2896642527978934, 0.28308097432521395, 0.27583936800526665, 0.27913100724160633, 0.619486504279131, 0.554970375246873, 0.23304805793285055, 0.17709019091507572, 0.17774851876234365, 0.11981566820276497, 0.8762343647136274, 0.11454904542462147, 0.07109940750493746, 0.025674786043449638, 0.0013166556945358788, 0.0013166556945358788, 0.0013166556945358788, 0.0013166556945358788, 0.0013166556945358788, 0.0013166556945358788, 0.0006583278472679394, 0.8986175115207373, 0.7458854509545754, 0.014483212639894667, 0.0006583278472679394, 0.0, 0.0, 0.0, 0.0, 0.0032916392363396972, 0.0019749835418038184, 0.009874917709019092, 0.005924950625411455, 0.007899934167215274, 0.009216589861751152, 0.005924950625411455, 0.007241606319947334, 0.005924950625411455, 0.008558262014483212, 0.016458196181698487, 0.021724818959842, 0.4937458854509546, 0.025674786043449638, 0.4878209348255431], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4216.gap.json b/pfam_gap_rates/DUF4216.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..931ca426a66ae739dbdaec6f104e3dc44d578db2
--- /dev/null
+++ b/pfam_gap_rates/DUF4216.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4216", "n_seqs": 395, "length": 80, "gap_rates": [0.19240506329113924, 0.15443037974683543, 0.12658227848101267, 0.12658227848101267, 0.1240506329113924, 0.12151898734177215, 0.11392405063291139, 0.5949367088607594, 0.9088607594936708, 0.10126582278481013, 0.10126582278481013, 0.09367088607594937, 0.09367088607594937, 0.09113924050632911, 0.08860759493670886, 0.09113924050632911, 0.08860759493670886, 0.08860759493670886, 0.0810126582278481, 0.0810126582278481, 0.0810126582278481, 0.7873417721518987, 0.8430379746835444, 0.44556962025316454, 0.26329113924050634, 0.17215189873417722, 0.1569620253164557, 0.1518987341772152, 0.043037974683544304, 0.04050632911392405, 0.04050632911392405, 0.04556962025316456, 0.0379746835443038, 0.0379746835443038, 0.1189873417721519, 0.030379746835443037, 0.027848101265822784, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.020253164556962026, 0.027848101265822784, 0.020253164556962026, 0.02278481012658228, 0.027848101265822784, 0.030379746835443037, 0.03291139240506329, 0.9240506329113924, 0.9265822784810127, 0.9291139240506329, 0.9265822784810127, 0.9240506329113924, 0.030379746835443037, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.043037974683544304, 0.04556962025316456, 0.05063291139240506, 0.05822784810126582, 0.06329113924050633, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.07088607594936709, 0.8759493670886076, 0.08860759493670886, 0.16962025316455695, 0.47341772151898737, 0.4962025316455696, 0.529113924050633], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4220.gap.json b/pfam_gap_rates/DUF4220.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aee5354a5c09dd465b68e39436705820cc04d31e
--- /dev/null
+++ b/pfam_gap_rates/DUF4220.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4249.gap.json b/pfam_gap_rates/DUF4249.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b52cded4116231d743b008e505246641fb82a79b
--- /dev/null
+++ b/pfam_gap_rates/DUF4249.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4250.gap.json b/pfam_gap_rates/DUF4250.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf317ca8886284b28051cd966d6fa7d5eaf677de
--- /dev/null
+++ b/pfam_gap_rates/DUF4250.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4250", "n_seqs": 221, "length": 56, "gap_rates": [0.3574660633484163, 0.25339366515837103, 0.11312217194570136, 0.04524886877828054, 0.04524886877828054, 0.04072398190045249, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.013574660633484163, 0.013574660633484163, 0.00904977375565611, 0.004524886877828055, 0.004524886877828055, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9366515837104072, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004524886877828055, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.01809954751131222, 0.058823529411764705], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4253.gap.json b/pfam_gap_rates/DUF4253.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ffcfe6a02641cc3dca8c5fa103cb5425d2e63c5
--- /dev/null
+++ b/pfam_gap_rates/DUF4253.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4256.gap.json b/pfam_gap_rates/DUF4256.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3cccf9200805049297c802a0b1b10047728fb88
--- /dev/null
+++ b/pfam_gap_rates/DUF4256.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4258.gap.json b/pfam_gap_rates/DUF4258.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4389f6c932c3112d539e2da9721bd1e71cc77383
--- /dev/null
+++ b/pfam_gap_rates/DUF4258.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4258", "n_seqs": 261, "length": 85, "gap_rates": [0.2796934865900383, 0.12643678160919541, 0.0842911877394636, 0.05747126436781609, 0.05363984674329502, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.019157088122605363, 0.01532567049808429, 0.011494252873563218, 0.011494252873563218, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9386973180076629, 0.9425287356321839, 0.9233716475095786, 0.007662835249042145, 0.8620689655172413, 0.11877394636015326, 0.0842911877394636, 0.05747126436781609, 0.04980842911877394, 0.0421455938697318, 0.011494252873563218, 0.06896551724137931, 0.16091954022988506, 0.2796934865900383, 0.39846743295019155, 0.8505747126436781, 0.9233716475095786, 0.9042145593869731, 0.7854406130268199, 0.32950191570881227, 0.2222222222222222, 0.13409961685823754, 0.038314176245210725, 0.022988505747126436, 0.13409961685823754, 0.11877394636015326, 0.09195402298850575, 0.07279693486590039, 0.14559386973180077, 0.04597701149425287, 0.038314176245210725, 0.034482758620689655, 0.01532567049808429, 0.019157088122605363, 0.011494252873563218, 0.9386973180076629, 0.9425287356321839, 0.9348659003831418, 0.019157088122605363, 0.019157088122605363, 0.019157088122605363, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.03065134099616858, 0.038314176245210725, 0.08812260536398467, 0.07662835249042145, 0.06896551724137931, 0.8390804597701149, 0.946360153256705, 0.6360153256704981, 0.06513409961685823, 0.05747126436781609, 0.06130268199233716, 0.07662835249042145, 0.09578544061302682, 0.19540229885057472, 0.6590038314176245], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4278.gap.json b/pfam_gap_rates/DUF4278.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcb1f6eedbdf06e205dd82334d51901912cdbd37
--- /dev/null
+++ b/pfam_gap_rates/DUF4278.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4278", "n_seqs": 138, "length": 69, "gap_rates": [0.18840579710144928, 0.07971014492753623, 0.050724637681159424, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.014492753623188406, 0.06521739130434782, 0.9420289855072463, 0.9492753623188406, 0.9420289855072463, 0.8985507246376812, 0.007246376811594203, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.014492753623188406, 0.007246376811594203, 0.0, 0.10869565217391304, 0.17391304347826086, 0.007246376811594203, 0.927536231884058, 0.9420289855072463, 0.9492753623188406, 0.9347826086956522, 0.927536231884058, 0.007246376811594203, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.014492753623188406, 0.021739130434782608, 0.021739130434782608, 0.028985507246376812, 0.9347826086956522, 0.050724637681159424, 0.036231884057971016, 0.043478260869565216, 0.050724637681159424, 0.057971014492753624, 0.06521739130434782, 0.10144927536231885, 0.9492753623188406, 0.9202898550724637, 0.2028985507246377, 0.12318840579710146, 0.10869565217391304, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.15942028985507245, 0.2391304347826087], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4281.gap.json b/pfam_gap_rates/DUF4281.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..074a37e01bbf3ee571cb3f89bb01454ba591841e
--- /dev/null
+++ b/pfam_gap_rates/DUF4281.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4281", "n_seqs": 192, "length": 147, "gap_rates": [0.7239583333333334, 0.17708333333333334, 0.13541666666666666, 0.13541666666666666, 0.125, 0.11458333333333333, 0.09375, 0.109375, 0.07291666666666667, 0.07291666666666667, 0.07291666666666667, 0.07291666666666667, 0.0625, 0.0625, 0.0625, 0.0625, 0.046875, 0.052083333333333336, 0.052083333333333336, 0.046875, 0.041666666666666664, 0.041666666666666664, 0.057291666666666664, 0.052083333333333336, 0.036458333333333336, 0.041666666666666664, 0.036458333333333336, 0.03125, 0.03125, 0.08854166666666667, 0.11458333333333333, 0.041666666666666664, 0.03125, 0.041666666666666664, 0.041666666666666664, 0.046875, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.546875, 0.671875, 0.9375, 0.9322916666666666, 0.6197916666666666, 0.5, 0.20833333333333334, 0.18229166666666666, 0.22916666666666666, 0.14583333333333334, 0.08854166666666667, 0.0625, 0.09895833333333333, 0.052083333333333336, 0.057291666666666664, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.046875, 0.8958333333333334, 0.8958333333333334, 0.041666666666666664, 0.041666666666666664, 0.026041666666666668, 0.8645833333333334, 0.8802083333333334, 0.8854166666666666, 0.890625, 0.9270833333333334, 0.9427083333333334, 0.9270833333333334, 0.9270833333333334, 0.890625, 0.8802083333333334, 0.875, 0.8645833333333334, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.015625, 0.015625, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.036458333333333336, 0.026041666666666668, 0.026041666666666668, 0.59375, 0.59375, 0.5625, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.036458333333333336, 0.036458333333333336, 0.036458333333333336, 0.036458333333333336, 0.036458333333333336, 0.036458333333333336, 0.036458333333333336, 0.036458333333333336, 0.036458333333333336, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.046875, 0.057291666666666664, 0.078125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4301.gap.json b/pfam_gap_rates/DUF4301.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd2ad99ec0367888884cbed33d19a9554dacf625
--- /dev/null
+++ b/pfam_gap_rates/DUF4301.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4316.gap.json b/pfam_gap_rates/DUF4316.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a73f19510c30fd1b61f2f78b0435c0745e1593c7
--- /dev/null
+++ b/pfam_gap_rates/DUF4316.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4316", "n_seqs": 133, "length": 70, "gap_rates": [0.38345864661654133, 0.09774436090225563, 0.007518796992481203, 0.007518796992481203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2556390977443609, 0.3157894736842105, 0.44360902255639095, 0.7744360902255639, 0.7969924812030075, 0.8721804511278195, 0.8721804511278195, 0.8796992481203008, 0.8947368421052632, 0.9172932330827067, 0.9323308270676691, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.9323308270676691, 0.9172932330827067, 0.9172932330827067, 0.8796992481203008, 0.8721804511278195, 0.8721804511278195, 0.8345864661654135, 0.7744360902255639, 0.5037593984962406, 0.44360902255639095, 0.3007518796992481, 0.2556390977443609, 0.12781954887218044, 0.13533834586466165, 0.08270676691729323, 0.08270676691729323, 0.06766917293233082, 0.09022556390977443, 0.08270676691729323, 0.06766917293233082, 0.07518796992481203, 0.07518796992481203, 0.06766917293233082, 0.06766917293233082, 0.09022556390977443, 0.12781954887218044, 0.18045112781954886, 0.43609022556390975], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4326.gap.json b/pfam_gap_rates/DUF4326.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72a79265f8689ab720ba66c5c0d558335468a6df
--- /dev/null
+++ b/pfam_gap_rates/DUF4326.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4326", "n_seqs": 106, "length": 175, "gap_rates": [0.8679245283018868, 0.7547169811320755, 0.6886792452830188, 0.6037735849056604, 0.49056603773584906, 0.4716981132075472, 0.46226415094339623, 0.39622641509433965, 0.330188679245283, 0.27358490566037735, 0.25471698113207547, 0.1792452830188679, 0.16037735849056603, 0.12264150943396226, 0.11320754716981132, 0.11320754716981132, 0.09433962264150944, 0.7075471698113207, 0.7169811320754716, 0.7169811320754716, 0.7358490566037735, 0.8113207547169812, 0.7735849056603774, 0.7358490566037735, 0.7169811320754716, 0.7169811320754716, 0.7075471698113207, 0.09433962264150944, 0.09433962264150944, 0.08490566037735849, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.08490566037735849, 0.07547169811320754, 0.08490566037735849, 0.07547169811320754, 0.07547169811320754, 0.0660377358490566, 0.05660377358490566, 0.6320754716981132, 0.7641509433962265, 0.7830188679245284, 0.8113207547169812, 0.8584905660377359, 0.8773584905660378, 0.8867924528301887, 0.8867924528301887, 0.9150943396226415, 0.9245283018867925, 0.9339622641509434, 0.9433962264150944, 0.9433962264150944, 0.9339622641509434, 0.9150943396226415, 0.9056603773584906, 0.8867924528301887, 0.8867924528301887, 0.8679245283018868, 0.839622641509434, 0.7924528301886793, 0.7641509433962265, 0.6981132075471698, 0.5754716981132075, 0.46226415094339623, 0.07547169811320754, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.03773584905660377, 0.5849056603773585, 0.6132075471698113, 0.6886792452830188, 0.7264150943396226, 0.7452830188679245, 0.7735849056603774, 0.8207547169811321, 0.8679245283018868, 0.8773584905660378, 0.8773584905660378, 0.8773584905660378, 0.8773584905660378, 0.8773584905660378, 0.8962264150943396, 0.9056603773584906, 0.9339622641509434, 0.9339622641509434, 0.9339622641509434, 0.8962264150943396, 0.8867924528301887, 0.8773584905660378, 0.8773584905660378, 0.8773584905660378, 0.8773584905660378, 0.8773584905660378, 0.8207547169811321, 0.8113207547169812, 0.7641509433962265, 0.7358490566037735, 0.7075471698113207, 0.6509433962264151, 0.5849056603773585, 0.5471698113207547, 0.42452830188679247, 0.46226415094339623, 0.4339622641509434, 0.29245283018867924, 0.1320754716981132, 0.03773584905660377, 0.8679245283018868, 0.8773584905660378, 0.9339622641509434, 0.9339622641509434, 0.9433962264150944, 0.9433962264150944, 0.9433962264150944, 0.9433962264150944, 0.9433962264150944, 0.9339622641509434, 0.9245283018867925, 0.8679245283018868, 0.8679245283018868, 0.04716981132075472, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.03773584905660377, 0.018867924528301886, 0.8490566037735849, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.8490566037735849, 0.8207547169811321, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.9150943396226415, 0.9433962264150944, 0.6886792452830188, 0.02830188679245283, 0.04716981132075472, 0.8584905660377359, 0.04716981132075472, 0.9150943396226415, 0.9339622641509434, 0.9433962264150944, 0.9150943396226415, 0.9150943396226415, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.04716981132075472, 0.07547169811320754, 0.16037735849056603, 0.660377358490566], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4328.gap.json b/pfam_gap_rates/DUF4328.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72d08940854e3a24572f775e1da389d7be8a992c
--- /dev/null
+++ b/pfam_gap_rates/DUF4328.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4328", "n_seqs": 131, "length": 177, "gap_rates": [0.8931297709923665, 0.8091603053435115, 0.6946564885496184, 0.6335877862595419, 0.6106870229007634, 0.5419847328244275, 0.5038167938931297, 0.45038167938931295, 0.37404580152671757, 0.35877862595419846, 0.3511450381679389, 0.3282442748091603, 0.3053435114503817, 0.26717557251908397, 0.22137404580152673, 0.22900763358778625, 0.20610687022900764, 0.17557251908396945, 0.1297709923664122, 0.0916030534351145, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.06870229007633588, 0.06870229007633588, 0.061068702290076333, 0.061068702290076333, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.06870229007633588, 0.061068702290076333, 0.16793893129770993, 0.10687022900763359, 0.8549618320610687, 0.061068702290076333, 0.04580152671755725, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.04580152671755725, 0.015267175572519083, 0.015267175572519083, 0.007633587786259542, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.11450381679389313, 0.11450381679389313, 0.1450381679389313, 0.13740458015267176, 0.15267175572519084, 0.2824427480916031, 0.32061068702290074, 0.3969465648854962, 0.6259541984732825, 0.9083969465648855, 0.9389312977099237, 0.9389312977099237, 0.9236641221374046, 0.8091603053435115, 0.3053435114503817, 0.26717557251908397, 0.22137404580152673, 0.20610687022900764, 0.183206106870229, 0.15267175572519084, 0.183206106870229, 0.4732824427480916, 0.4122137404580153, 0.3435114503816794, 0.030534351145038167, 0.022900763358778626, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.015267175572519083, 0.022900763358778626, 0.015267175572519083, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.022900763358778626, 0.015267175572519083, 0.022900763358778626, 0.03816793893129771, 0.09923664122137404, 0.0916030534351145, 0.07633587786259542, 0.32061068702290074, 0.3969465648854962, 0.9465648854961832, 0.8931297709923665, 0.5801526717557252, 0.48854961832061067, 0.40458015267175573, 0.11450381679389313, 0.09923664122137404, 0.08396946564885496, 0.05343511450381679, 0.03816793893129771, 0.030534351145038167, 0.03816793893129771, 0.03816793893129771, 0.08396946564885496, 0.07633587786259542, 0.10687022900763359, 0.07633587786259542, 0.061068702290076333, 0.03816793893129771, 0.04580152671755725, 0.9465648854961832, 0.9465648854961832, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.030534351145038167, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.05343511450381679, 0.07633587786259542, 0.08396946564885496, 0.0916030534351145, 0.10687022900763359, 0.1450381679389313, 0.2595419847328244, 0.8091603053435115], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4338.gap.json b/pfam_gap_rates/DUF4338.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bcf36d46308bcc6e1a522d4474ca809feb95478
--- /dev/null
+++ b/pfam_gap_rates/DUF4338.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4350.gap.json b/pfam_gap_rates/DUF4350.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..841544a9d1501007d2fb3c9c0925ff927cb64fbf
--- /dev/null
+++ b/pfam_gap_rates/DUF4350.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4350", "n_seqs": 190, "length": 88, "gap_rates": [0.35789473684210527, 0.21578947368421053, 0.07894736842105263, 0.05263157894736842, 0.02631578947368421, 0.015789473684210527, 0.010526315789473684, 0.010526315789473684, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02631578947368421, 0.005263157894736842, 0.0, 0.9157894736842105, 0.8578947368421053, 0.0, 0.0, 0.0, 0.0, 0.0, 0.09473684210526316, 0.07894736842105263, 0.031578947368421054, 0.0, 0.005263157894736842, 0.9421052631578948, 0.0, 0.0, 0.8263157894736842, 0.6578947368421053, 0.0, 0.010526315789473684, 0.868421052631579, 0.005263157894736842, 0.0, 0.6052631578947368, 0.8210526315789474, 0.9157894736842105, 0.9315789473684211, 0.9473684210526315, 0.9210526315789473, 0.8947368421052632, 0.7473684210526316, 0.5526315789473685, 0.0, 0.0, 0.005263157894736842, 0.9473684210526315, 0.9368421052631579, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3, 0.03684210526315789, 0.015789473684210527, 0.005263157894736842, 0.010526315789473684, 0.8947368421052632, 0.08421052631578947, 0.11052631578947368, 0.1, 0.021052631578947368, 0.031578947368421054, 0.031578947368421054, 0.02631578947368421, 0.042105263157894736, 0.1, 0.1, 0.09473684210526316, 0.9157894736842105, 0.05263157894736842, 0.05789473684210526, 0.06315789473684211, 0.05789473684210526, 0.06842105263157895, 0.06842105263157895, 0.11052631578947368, 0.2631578947368421, 0.6947368421052632], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4357.gap.json b/pfam_gap_rates/DUF4357.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e884467d0f77ee864ff85994c9a10e57b2cac443
--- /dev/null
+++ b/pfam_gap_rates/DUF4357.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4357", "n_seqs": 198, "length": 58, "gap_rates": [0.47474747474747475, 0.3383838383838384, 0.29292929292929293, 0.2727272727272727, 0.2676767676767677, 0.26262626262626265, 0.25757575757575757, 0.2474747474747475, 0.25252525252525254, 0.2828282828282828, 0.2676767676767677, 0.9343434343434344, 0.9141414141414141, 0.2777777777777778, 0.25252525252525254, 0.803030303030303, 0.23737373737373738, 0.20202020202020202, 0.1414141414141414, 0.12626262626262627, 0.025252525252525252, 0.020202020202020204, 0.010101010101010102, 0.015151515151515152, 0.010101010101010102, 0.005050505050505051, 0.005050505050505051, 0.005050505050505051, 0.010101010101010102, 0.005050505050505051, 0.005050505050505051, 0.005050505050505051, 0.015151515151515152, 0.010101010101010102, 0.010101010101010102, 0.005050505050505051, 0.0, 0.005050505050505051, 0.005050505050505051, 0.010101010101010102, 0.005050505050505051, 0.005050505050505051, 0.005050505050505051, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.020202020202020204, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.8939393939393939, 0.045454545454545456, 0.09595959595959595, 0.1414141414141414, 0.15151515151515152, 0.18181818181818182, 0.25757575757575757, 0.3787878787878788], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4365.gap.json b/pfam_gap_rates/DUF4365.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba2bfcd90f37701a149db5d5502735714e4253c7
--- /dev/null
+++ b/pfam_gap_rates/DUF4365.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4365", "n_seqs": 142, "length": 181, "gap_rates": [0.7253521126760564, 0.5563380281690141, 0.3873239436619718, 0.3028169014084507, 0.22535211267605634, 0.19718309859154928, 0.176056338028169, 0.1619718309859155, 0.14788732394366197, 0.14084507042253522, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.1267605633802817, 0.28169014084507044, 0.13380281690140844, 0.1056338028169014, 0.09859154929577464, 0.1056338028169014, 0.09859154929577464, 0.21830985915492956, 0.19014084507042253, 0.20422535211267606, 0.18309859154929578, 0.3028169014084507, 0.3591549295774648, 0.7746478873239436, 0.056338028169014086, 0.8098591549295775, 0.04225352112676056, 0.04225352112676056, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.04225352112676056, 0.04225352112676056, 0.852112676056338, 0.9436619718309859, 0.5985915492957746, 0.04225352112676056, 0.04929577464788732, 0.11971830985915492, 0.11267605633802817, 0.2323943661971831, 0.13380281690140844, 0.1056338028169014, 0.04225352112676056, 0.7887323943661971, 0.8591549295774648, 0.9295774647887324, 0.8943661971830986, 0.8380281690140845, 0.6901408450704225, 0.035211267605633804, 0.028169014084507043, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.15492957746478872, 0.36619718309859156, 0.19718309859154928, 0.13380281690140844, 0.08450704225352113, 0.056338028169014086, 0.09154929577464789, 0.13380281690140844, 0.2323943661971831, 0.9295774647887324, 0.9366197183098591, 0.9366197183098591, 0.9295774647887324, 0.9084507042253521, 0.4507042253521127, 0.23943661971830985, 0.09154929577464789, 0.06338028169014084, 0.9084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.7535211267605634, 0.6549295774647887, 0.007042253521126761, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007042253521126761, 0.0, 0.0, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.028169014084507043, 0.5985915492957746, 0.647887323943662, 0.676056338028169, 0.6971830985915493, 0.6971830985915493, 0.7112676056338029, 0.7112676056338029, 0.7323943661971831, 0.7112676056338029, 0.7112676056338029, 0.7112676056338029, 0.6971830985915493, 0.6830985915492958, 0.6690140845070423, 0.6338028169014085, 0.5633802816901409, 0.028169014084507043, 0.028169014084507043, 0.02112676056338028, 0.02112676056338028, 0.028169014084507043, 0.014084507042253521, 0.014084507042253521, 0.2535211267605634, 0.676056338028169, 0.7676056338028169, 0.8450704225352113, 0.9295774647887324, 0.8943661971830986, 0.8098591549295775, 0.7112676056338029, 0.6408450704225352, 0.08450704225352113, 0.1267605633802817, 0.11971830985915492, 0.09154929577464789, 0.1056338028169014, 0.11971830985915492, 0.24647887323943662, 0.36619718309859156, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.11267605633802817, 0.13380281690140844, 0.13380281690140844, 0.14788732394366197, 0.16901408450704225, 0.20422535211267606, 0.8943661971830986, 0.176056338028169, 0.19014084507042253, 0.20422535211267606, 0.22535211267605634, 0.24647887323943662, 0.2605633802816901, 0.2746478873239437, 0.2887323943661972, 0.29577464788732394, 0.34507042253521125, 0.4788732394366197, 0.6971830985915493], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4371.gap.json b/pfam_gap_rates/DUF4371.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa5be362c28b23dd735c772d17a01026e661a074
--- /dev/null
+++ b/pfam_gap_rates/DUF4371.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4379.gap.json b/pfam_gap_rates/DUF4379.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85a39ee6e1e3904ccf0cd1d291c497deb4db1810
--- /dev/null
+++ b/pfam_gap_rates/DUF4379.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4379", "n_seqs": 513, "length": 64, "gap_rates": [0.43079922027290446, 0.24171539961013644, 0.15789473684210525, 0.1286549707602339, 0.11695906432748537, 0.10136452241715399, 0.08966861598440545, 0.08966861598440545, 0.2982456140350877, 0.08966861598440545, 0.32748538011695905, 0.3001949317738791, 0.9161793372319688, 0.22612085769980506, 0.08187134502923976, 0.0682261208576998, 0.03313840155945419, 0.02729044834307992, 0.029239766081871343, 0.025341130604288498, 0.01949317738791423, 0.009746588693957114, 0.007797270955165692, 0.005847953216374269, 0.009746588693957114, 0.007797270955165692, 0.003898635477582846, 0.003898635477582846, 0.001949317738791423, 0.0, 0.0, 0.0, 0.0, 0.9025341130604289, 0.003898635477582846, 0.003898635477582846, 0.40350877192982454, 0.005847953216374269, 0.9395711500974658, 0.005847953216374269, 0.005847953216374269, 0.007797270955165692, 0.007797270955165692, 0.007797270955165692, 0.009746588693957114, 0.009746588693957114, 0.009746588693957114, 0.007797270955165692, 0.007797270955165692, 0.007797270955165692, 0.8771929824561403, 0.029239766081871343, 0.031189083820662766, 0.029239766081871343, 0.03508771929824561, 0.39766081871345027, 0.7251461988304093, 0.9278752436647173, 0.9083820662768031, 0.6627680311890838, 0.031189083820662766, 0.03508771929824561, 0.04678362573099415, 0.04678362573099415], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4382.gap.json b/pfam_gap_rates/DUF4382.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae16cb82f5db3208a4145ffa33e43c42b31fb385
--- /dev/null
+++ b/pfam_gap_rates/DUF4382.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4382", "n_seqs": 169, "length": 211, "gap_rates": [0.5857988165680473, 0.23076923076923078, 0.17159763313609466, 0.11242603550295859, 0.10059171597633136, 0.10059171597633136, 0.10059171597633136, 0.09467455621301775, 0.08875739644970414, 0.08875739644970414, 0.07692307692307693, 0.07100591715976332, 0.30177514792899407, 0.8106508875739645, 0.7988165680473372, 0.05917159763313609, 0.04142011834319527, 0.023668639053254437, 0.023668639053254437, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.8047337278106509, 0.834319526627219, 0.8520710059171598, 0.8698224852071006, 0.8816568047337278, 0.893491124260355, 0.9053254437869822, 0.9112426035502958, 0.9230769230769231, 0.9467455621301775, 0.9467455621301775, 0.9467455621301775, 0.9467455621301775, 0.9467455621301775, 0.9467455621301775, 0.9467455621301775, 0.9349112426035503, 0.9230769230769231, 0.9053254437869822, 0.8994082840236687, 0.893491124260355, 0.8757396449704142, 0.8579881656804734, 0.8402366863905325, 0.8224852071005917, 0.7041420118343196, 0.6272189349112426, 0.5562130177514792, 0.44970414201183434, 0.42011834319526625, 0.35502958579881655, 0.17751479289940827, 0.08284023668639054, 0.029585798816568046, 0.047337278106508875, 0.05325443786982249, 0.0650887573964497, 0.44970414201183434, 0.8579881656804734, 0.6568047337278107, 0.591715976331361, 0.46745562130177515, 0.029585798816568046, 0.011834319526627219, 0.005917159763313609, 0.023668639053254437, 0.005917159763313609, 0.0, 0.0, 0.0, 0.01775147928994083, 0.03550295857988166, 0.023668639053254437, 0.023668639053254437, 0.05917159763313609, 0.023668639053254437, 0.9467455621301775, 0.6982248520710059, 0.03550295857988166, 0.0, 0.0, 0.011834319526627219, 0.005917159763313609, 0.011834319526627219, 0.0, 0.0, 0.0, 0.005917159763313609, 0.005917159763313609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01775147928994083, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011834319526627219, 0.13609467455621302, 0.15384615384615385, 0.16568047337278108, 0.16568047337278108, 0.1952662721893491, 0.4437869822485207, 0.5621301775147929, 0.5798816568047337, 0.6449704142011834, 0.7455621301775148, 0.8165680473372781, 0.8757396449704142, 0.9053254437869822, 0.9467455621301775, 0.9171597633136095, 0.893491124260355, 0.8520710059171598, 0.7810650887573964, 0.6745562130177515, 0.621301775147929, 0.5739644970414202, 0.5088757396449705, 0.2485207100591716, 0.17159763313609466, 0.16568047337278108, 0.15976331360946747, 0.13609467455621302, 0.08284023668639054, 0.011834319526627219, 0.047337278106508875, 0.05325443786982249, 0.04142011834319527, 0.9171597633136095, 0.10059171597633136, 0.10059171597633136, 0.10650887573964497, 0.10059171597633136, 0.11242603550295859, 0.9112426035502958, 0.10059171597633136, 0.08875739644970414, 0.0650887573964497, 0.047337278106508875, 0.05917159763313609, 0.28402366863905326, 0.26627218934911245, 0.7633136094674556, 0.7810650887573964, 0.8461538461538461, 0.9349112426035503, 0.9467455621301775, 0.893491124260355, 0.7869822485207101, 0.7751479289940828, 0.727810650887574, 0.029585798816568046, 0.04142011834319527, 0.08875739644970414, 0.5621301775147929, 0.4911242603550296, 0.04142011834319527, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.029585798816568046, 0.03550295857988166, 0.03550295857988166, 0.047337278106508875, 0.05325443786982249, 0.0650887573964497, 0.07100591715976332, 0.10650887573964497, 0.834319526627219, 0.9289940828402367, 0.5798816568047337, 0.28402366863905326, 0.23668639053254437, 0.23668639053254437, 0.1834319526627219, 0.1893491124260355, 0.20118343195266272, 0.20710059171597633, 0.21301775147928995, 0.23076923076923078, 0.23076923076923078], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4412.gap.json b/pfam_gap_rates/DUF4412.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e88982b1a8717bc92a96d298cbead7b155deb1f7
--- /dev/null
+++ b/pfam_gap_rates/DUF4412.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4412", "n_seqs": 115, "length": 231, "gap_rates": [0.8695652173913043, 0.8608695652173913, 0.8521739130434782, 0.8260869565217391, 0.808695652173913, 0.6956521739130435, 0.6521739130434783, 0.6434782608695652, 0.6434782608695652, 0.6347826086956522, 0.6086956521739131, 0.6, 0.9130434782608695, 0.5304347826086957, 0.48695652173913045, 0.4434782608695652, 0.4, 0.9130434782608695, 0.3739130434782609, 0.3652173913043478, 0.3652173913043478, 0.3565217391304348, 0.3565217391304348, 0.3565217391304348, 0.3565217391304348, 0.34782608695652173, 0.34782608695652173, 0.34782608695652173, 0.34782608695652173, 0.3391304347826087, 0.3217391304347826, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.2956521739130435, 0.30434782608695654, 0.34782608695652173, 0.3565217391304348, 0.5391304347826087, 0.7391304347826086, 0.6956521739130435, 0.6695652173913044, 0.5739130434782609, 0.5478260869565217, 0.3391304347826087, 0.43478260869565216, 0.23478260869565218, 0.20869565217391303, 0.19130434782608696, 0.2, 0.1826086956521739, 0.17391304347826086, 0.16521739130434782, 0.2, 0.6086956521739131, 0.30434782608695654, 0.13043478260869565, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.08695652173913043, 0.10434782608695652, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09565217391304348, 0.10434782608695652, 0.09565217391304348, 0.09565217391304348, 0.08695652173913043, 0.09565217391304348, 0.9217391304347826, 0.9478260869565217, 0.7739130434782608, 0.2956521739130435, 0.2608695652173913, 0.1826086956521739, 0.14782608695652175, 0.13043478260869565, 0.09565217391304348, 0.0782608695652174, 0.05217391304347826, 0.06086956521739131, 0.043478260869565216, 0.043478260869565216, 0.034782608695652174, 0.043478260869565216, 0.6434782608695652, 0.7565217391304347, 0.8695652173913043, 0.9304347826086956, 0.9304347826086956, 0.8173913043478261, 0.6956521739130435, 0.5739130434782609, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.05217391304347826, 0.043478260869565216, 0.034782608695652174, 0.02608695652173913, 0.034782608695652174, 0.02608695652173913, 0.4782608695652174, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.034782608695652174, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.043478260869565216, 0.7565217391304347, 0.8956521739130435, 0.8521739130434782, 0.6173913043478261, 0.043478260869565216, 0.06956521739130435, 0.0782608695652174, 0.05217391304347826, 0.8260869565217391, 0.9043478260869565, 0.9391304347826087, 0.8869565217391304, 0.8, 0.05217391304347826, 0.05217391304347826, 0.06086956521739131, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.06956521739130435, 0.08695652173913043, 0.09565217391304348, 0.2, 0.9304347826086956, 0.8782608695652174, 0.33043478260869563, 0.3739130434782609, 0.3652173913043478, 0.40869565217391307, 0.41739130434782606, 0.4260869565217391, 0.4260869565217391, 0.4434782608695652, 0.4434782608695652, 0.4608695652173913, 0.4434782608695652, 0.45217391304347826, 0.45217391304347826, 0.4782608695652174, 0.48695652173913045, 0.4782608695652174, 0.9217391304347826, 0.9391304347826087, 0.8434782608695652, 0.6521739130434783, 0.5478260869565217, 0.5130434782608696, 0.5043478260869565, 0.4782608695652174, 0.48695652173913045, 0.46956521739130436, 0.4782608695652174, 0.48695652173913045, 0.5043478260869565, 0.4956521739130435, 0.9391304347826087, 0.9043478260869565, 0.48695652173913045, 0.4782608695652174, 0.5130434782608696, 0.48695652173913045, 0.9043478260869565, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.4782608695652174, 0.4782608695652174, 0.4782608695652174, 0.9217391304347826, 0.9478260869565217, 0.9478260869565217, 0.9217391304347826, 0.4782608695652174, 0.5391304347826087, 0.8434782608695652, 0.9217391304347826, 0.9478260869565217, 0.9217391304347826, 0.782608695652174, 0.5304347826086957, 0.4782608695652174, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.48695652173913045, 0.4956521739130435, 0.4956521739130435, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5217391304347826, 0.5217391304347826, 0.5217391304347826, 0.5217391304347826, 0.5304347826086957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4413.gap.json b/pfam_gap_rates/DUF4413.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81fe3cc6bdbbd8f707209e4c3fb33cd836273bfd
--- /dev/null
+++ b/pfam_gap_rates/DUF4413.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF442.gap.json b/pfam_gap_rates/DUF442.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a6d9652713a133a26247d6240eb033d4d3d8161
--- /dev/null
+++ b/pfam_gap_rates/DUF442.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF4420.gap.json b/pfam_gap_rates/DUF4420.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60541ded53b2e4aa5cd57ae49feffd8977e92f60
--- /dev/null
+++ b/pfam_gap_rates/DUF4420.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4426.gap.json b/pfam_gap_rates/DUF4426.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eff5dacc598648f363cc1c2bced8140158fb076f
--- /dev/null
+++ b/pfam_gap_rates/DUF4426.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4426", "n_seqs": 107, "length": 124, "gap_rates": [0.9439252336448598, 0.4392523364485981, 0.18691588785046728, 0.1308411214953271, 0.037383177570093455, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.056074766355140186, 0.07476635514018691, 0.04672897196261682, 0.06542056074766354, 0.1588785046728972, 0.19626168224299065, 0.14953271028037382, 0.9158878504672897, 0.5607476635514018, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.037383177570093455, 0.037383177570093455, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.4672897196261682, 0.028037383177570093, 0.056074766355140186, 0.028037383177570093, 0.028037383177570093, 0.06542056074766354, 0.21495327102803738, 0.018691588785046728, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.056074766355140186, 0.102803738317757, 0.16822429906542055, 0.3644859813084112], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4476.gap.json b/pfam_gap_rates/DUF4476.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acdbc1257411a1db2311a08d4527300931ef65fa
--- /dev/null
+++ b/pfam_gap_rates/DUF4476.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4476", "n_seqs": 159, "length": 95, "gap_rates": [0.4716981132075472, 0.4088050314465409, 0.3081761006289308, 0.25157232704402516, 0.2138364779874214, 0.18238993710691823, 0.16981132075471697, 0.16352201257861634, 0.15723270440251572, 0.1509433962264151, 0.14465408805031446, 0.13836477987421383, 0.13836477987421383, 0.14465408805031446, 0.14465408805031446, 0.14465408805031446, 0.13836477987421383, 0.1509433962264151, 0.12578616352201258, 0.11949685534591195, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.0880503144654088, 0.06918238993710692, 0.06918238993710692, 0.06289308176100629, 0.3018867924528302, 0.9056603773584906, 0.16981132075471697, 0.06289308176100629, 0.050314465408805034, 0.0440251572327044, 0.03773584905660377, 0.7169811320754716, 0.6226415094339622, 0.018867924528301886, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.025157232704402517, 0.012578616352201259, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006289308176100629, 0.012578616352201259, 0.05660377358490566, 0.06289308176100629, 0.1320754716981132, 0.1509433962264151, 0.18867924528301888, 0.18867924528301888, 0.1761006289308176, 0.1761006289308176, 0.1761006289308176, 0.8238993710691824, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.20754716981132076, 0.2138364779874214, 0.2641509433962264, 0.89937106918239, 0.24528301886792453, 0.2389937106918239, 0.2389937106918239, 0.24528301886792453, 0.25157232704402516, 0.2578616352201258, 0.3018867924528302, 0.3270440251572327, 0.4088050314465409, 0.5471698113207547], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4478.gap.json b/pfam_gap_rates/DUF4478.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98dc742dc5e1abbf98231b2faf7c6c9274ab1b68
--- /dev/null
+++ b/pfam_gap_rates/DUF4478.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4478", "n_seqs": 136, "length": 108, "gap_rates": [0.14705882352941177, 0.058823529411764705, 0.058823529411764705, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.029411764705882353, 0.029411764705882353, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.029411764705882353, 0.029411764705882353, 0.07352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.08088235294117647, 0.27941176470588236, 0.7867647058823529], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4735.gap.json b/pfam_gap_rates/DUF4735.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7297e88c058b735ad6bb35a8370071150b0433b4
--- /dev/null
+++ b/pfam_gap_rates/DUF4735.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4735", "n_seqs": 100, "length": 361, "gap_rates": [0.5, 0.49, 0.44, 0.44, 0.44, 0.44, 0.42, 0.41, 0.41, 0.41, 0.41, 0.4, 0.4, 0.4, 0.39, 0.39, 0.39, 0.44, 0.42, 0.43, 0.88, 0.94, 0.78, 0.67, 0.41, 0.38, 0.37, 0.36, 0.36, 0.36, 0.35, 0.35, 0.34, 0.35, 0.35, 0.34, 0.33, 0.33, 0.33, 0.33, 0.33, 0.33, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.34, 0.33, 0.33, 0.32, 0.32, 0.33, 0.31, 0.32, 0.32, 0.31, 0.31, 0.3, 0.31, 0.34, 0.3, 0.3, 0.28, 0.28, 0.28, 0.28, 0.28, 0.28, 0.65, 0.28, 0.29, 0.28, 0.28, 0.28, 0.28, 0.28, 0.28, 0.92, 0.89, 0.28, 0.28, 0.29, 0.89, 0.92, 0.94, 0.94, 0.9, 0.88, 0.28, 0.28, 0.27, 0.27, 0.25, 0.26, 0.26, 0.25, 0.26, 0.3, 0.28, 0.27, 0.24, 0.75, 0.83, 0.89, 0.9, 0.94, 0.94, 0.91, 0.9, 0.86, 0.81, 0.66, 0.24, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.24, 0.24, 0.25, 0.24, 0.24, 0.24, 0.95, 0.23, 0.23, 0.25, 0.26, 0.28, 0.28, 0.27, 0.5, 0.46, 0.86, 0.93, 0.95, 0.94, 0.9, 0.86, 0.27, 0.26, 0.25, 0.25, 0.25, 0.24, 0.24, 0.24, 0.24, 0.85, 0.23, 0.23, 0.23, 0.23, 0.24, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.23, 0.22, 0.22, 0.24, 0.24, 0.24, 0.24, 0.27, 0.24, 0.41, 0.41, 0.5, 0.49, 0.49, 0.6, 0.75, 0.63, 0.52, 0.31, 0.26, 0.25, 0.25, 0.23, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 0.21, 0.21, 0.21, 0.19, 0.19, 0.83, 0.18, 0.18, 0.18, 0.17, 0.17, 0.19, 0.89, 0.92, 0.93, 0.92, 0.81, 0.22, 0.18, 0.18, 0.17, 0.17, 0.17, 0.16, 0.15, 0.15, 0.15, 0.15, 0.14, 0.15, 0.17, 0.19, 0.19, 0.18, 0.18, 0.91, 0.18, 0.18, 0.18, 0.19, 0.19, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.56, 0.19, 0.24, 0.26, 0.19, 0.19, 0.2, 0.93, 0.93, 0.94, 0.94, 0.94, 0.93, 0.93, 0.43, 0.48, 0.47, 0.51, 0.52, 0.51, 0.51, 0.51, 0.47, 0.45, 0.42, 0.82, 0.87, 0.88, 0.9, 0.91, 0.93, 0.93, 0.93, 0.94, 0.95, 0.95, 0.95, 0.94, 0.93, 0.93, 0.93, 0.9, 0.89, 0.87, 0.83, 0.81, 0.52, 0.51, 0.47, 0.45, 0.42, 0.36, 0.35, 0.34, 0.34, 0.33, 0.36, 0.33, 0.31, 0.32, 0.31, 0.3, 0.27, 0.27, 0.27, 0.28, 0.29, 0.3, 0.95, 0.29, 0.93, 0.95, 0.93, 0.93, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.31, 0.31, 0.31, 0.32, 0.42, 0.78], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4749.gap.json b/pfam_gap_rates/DUF4749.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75f1ee3ac45502bcf55998463d0c972b3d9b158e
--- /dev/null
+++ b/pfam_gap_rates/DUF4749.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4749", "n_seqs": 199, "length": 142, "gap_rates": [0.48743718592964824, 0.35175879396984927, 0.32663316582914576, 0.3015075376884422, 0.2562814070351759, 0.23618090452261306, 0.21105527638190955, 0.20603015075376885, 0.20603015075376885, 0.20603015075376885, 0.20603015075376885, 0.20603015075376885, 0.20603015075376885, 0.20100502512562815, 0.20100502512562815, 0.17587939698492464, 0.1708542713567839, 0.1658291457286432, 0.1457286432160804, 0.1306532663316583, 0.1306532663316583, 0.9095477386934674, 0.9095477386934674, 0.8994974874371859, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.135678391959799, 0.1708542713567839, 0.1708542713567839, 0.18592964824120603, 0.18592964824120603, 0.1708542713567839, 0.1658291457286432, 0.23618090452261306, 0.23115577889447236, 0.23115577889447236, 0.2562814070351759, 0.25125628140703515, 0.33668341708542715, 0.33668341708542715, 0.4824120603015075, 0.914572864321608, 0.9195979899497487, 0.8341708542713567, 0.6884422110552764, 0.6080402010050251, 0.8241206030150754, 0.9346733668341709, 0.914572864321608, 0.7035175879396985, 0.25125628140703515, 0.19597989949748743, 0.1306532663316583, 0.12060301507537688, 0.11055276381909548, 0.10050251256281408, 0.10552763819095477, 0.11557788944723618, 0.1306532663316583, 0.11055276381909548, 0.10552763819095477, 0.10552763819095477, 0.10552763819095477, 0.10552763819095477, 0.10552763819095477, 0.10552763819095477, 0.11055276381909548, 0.11055276381909548, 0.11557788944723618, 0.11557788944723618, 0.11055276381909548, 0.11055276381909548, 0.11557788944723618, 0.135678391959799, 0.1407035175879397, 0.7035175879396985, 0.7487437185929648, 0.7788944723618091, 0.7939698492462312, 0.8894472361809045, 0.8994974874371859, 0.9195979899497487, 0.9346733668341709, 0.9396984924623115, 0.9447236180904522, 0.949748743718593, 0.9447236180904522, 0.9396984924623115, 0.9346733668341709, 0.914572864321608, 0.8994974874371859, 0.8040201005025126, 0.7788944723618091, 0.7738693467336684, 0.7286432160804021, 0.6532663316582915, 0.19597989949748743, 0.20100502512562815, 0.6984924623115578, 0.7135678391959799, 0.8040201005025126, 0.8341708542713567, 0.8592964824120602, 0.9296482412060302, 0.9447236180904522, 0.949748743718593, 0.9396984924623115, 0.8994974874371859, 0.8341708542713567, 0.8241206030150754, 0.8040201005025126, 0.7035175879396985, 0.6633165829145728, 0.21105527638190955, 0.21105527638190955, 0.21608040201005024, 0.23618090452261306, 0.24120603015075376, 0.25125628140703515, 0.271356783919598, 0.2814070351758794, 0.3015075376884422, 0.3015075376884422, 0.3065326633165829, 0.31155778894472363, 0.31155778894472363, 0.32663316582914576, 0.33668341708542715, 0.48743718592964824, 0.5175879396984925, 0.5628140703517588, 0.6080402010050251, 0.6432160804020101, 0.6683417085427136, 0.7035175879396985, 0.7688442211055276, 0.7939698492462312, 0.8291457286432161, 0.8442211055276382], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4800.gap.json b/pfam_gap_rates/DUF4800.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..84e90b926d1d826bee4e8bc63062be37262018f0
--- /dev/null
+++ b/pfam_gap_rates/DUF4800.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4800", "n_seqs": 124, "length": 258, "gap_rates": [0.7096774193548387, 0.7016129032258065, 0.6451612903225806, 0.6209677419354839, 0.6209677419354839, 0.6209677419354839, 0.6209677419354839, 0.6209677419354839, 0.6209677419354839, 0.6209677419354839, 0.6209677419354839, 0.6209677419354839, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6209677419354839, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6209677419354839, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4806.gap.json b/pfam_gap_rates/DUF4806.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8fdb99f25d74464648534aa2f783a10f50be266
--- /dev/null
+++ b/pfam_gap_rates/DUF4806.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4806", "n_seqs": 329, "length": 100, "gap_rates": [0.9361702127659575, 0.8237082066869301, 0.7537993920972644, 0.6534954407294833, 0.3677811550151976, 0.1276595744680851, 0.09422492401215805, 0.0425531914893617, 0.0364741641337386, 0.0364741641337386, 0.02127659574468085, 0.00911854103343465, 0.00911854103343465, 0.00911854103343465, 0.00911854103343465, 0.00911854103343465, 0.00911854103343465, 0.00911854103343465, 0.00911854103343465, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.3556231003039514, 0.030395136778115502, 0.02735562310030395, 0.03343465045592705, 0.057750759878419454, 0.0121580547112462, 0.00911854103343465, 0.0060790273556231, 0.0060790273556231, 0.00303951367781155, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0060790273556231, 0.0, 0.0, 0.08206686930091185, 0.3100303951367781, 0.8601823708206687, 0.24924012158054712, 0.04559270516717325, 0.9209726443768997, 0.00303951367781155, 0.0, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.0, 0.9118541033434651, 0.9240121580547113, 0.9179331306990881, 0.8541033434650456, 0.00303951367781155, 0.0, 0.0, 0.0, 0.0, 0.00911854103343465, 0.0, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.00911854103343465, 0.015197568389057751, 0.015197568389057751, 0.02127659574468085, 0.0425531914893617, 0.541033434650456, 0.60790273556231, 0.723404255319149, 0.9331306990881459, 0.9483282674772037, 0.8936170212765957, 0.601823708206687, 0.15501519756838905, 0.1580547112462006, 0.17325227963525835, 0.19148936170212766, 0.20972644376899696, 0.22188449848024316, 0.2613981762917933, 0.303951367781155, 0.6413373860182371, 0.42249240121580545, 0.45592705167173253, 0.48936170212765956, 0.5106382978723404, 0.5653495440729484, 0.6504559270516718, 0.7598784194528876, 0.8297872340425532], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF481.gap.json b/pfam_gap_rates/DUF481.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24c609648f3d229466f3847c681fb953945347fc
--- /dev/null
+++ b/pfam_gap_rates/DUF481.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4816.gap.json b/pfam_gap_rates/DUF4816.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ddd9898857399d6e4bbe91cacd14c0f3286a0a5
--- /dev/null
+++ b/pfam_gap_rates/DUF4816.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4816", "n_seqs": 208, "length": 45, "gap_rates": [0.7067307692307693, 0.4375, 0.8125, 0.8125, 0.22115384615384615, 0.19230769230769232, 0.13942307692307693, 0.13942307692307693, 0.08653846153846154, 0.0673076923076923, 0.0625, 0.019230769230769232, 0.019230769230769232, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.0, 0.0, 0.0, 0.0, 0.04326923076923077, 0.04326923076923077, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.22115384615384615, 0.22115384615384615, 0.23557692307692307, 0.2403846153846154, 0.2644230769230769, 0.27403846153846156, 0.28365384615384615, 0.28365384615384615, 0.28365384615384615, 0.28846153846153844, 0.2932692307692308, 0.32211538461538464, 0.36538461538461536, 0.7019230769230769], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4837.gap.json b/pfam_gap_rates/DUF4837.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..857ab06c6337c893a849a56b61ae9a8d678ad5ee
--- /dev/null
+++ b/pfam_gap_rates/DUF4837.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4953.gap.json b/pfam_gap_rates/DUF4953.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e7289c9db89c8815129a5ecb304da727f281dfe
--- /dev/null
+++ b/pfam_gap_rates/DUF4953.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF5009.gap.json b/pfam_gap_rates/DUF5009.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf1b42ca46a4bdb44c31173267e2ecdfb7551b9e
--- /dev/null
+++ b/pfam_gap_rates/DUF5009.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5058.gap.json b/pfam_gap_rates/DUF5058.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28f0d3f94cbb92796a79e29fa364ee32085ed87c
--- /dev/null
+++ b/pfam_gap_rates/DUF5058.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5128.gap.json b/pfam_gap_rates/DUF5128.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76b0c7d09760698ac5a21856fb6d11afbf375b19
--- /dev/null
+++ b/pfam_gap_rates/DUF5128.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF523.gap.json b/pfam_gap_rates/DUF523.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..066d0833cf370ac34b6d2f10a41d56ef11fa2b80
--- /dev/null
+++ b/pfam_gap_rates/DUF523.gap.json
@@ -0,0 +1 @@
+{"family": "DUF523", "n_seqs": 722, "length": 160, "gap_rates": [0.29778393351800553, 0.05263157894736842, 0.045706371191135735, 0.038781163434903045, 0.038781163434903045, 0.038781163434903045, 0.037396121883656507, 0.04293628808864266, 0.036011080332409975, 0.036011080332409975, 0.0332409972299169, 0.0332409972299169, 0.030470914127423823, 0.030470914127423823, 0.030470914127423823, 0.030470914127423823, 0.030470914127423823, 0.030470914127423823, 0.030470914127423823, 0.030470914127423823, 0.43351800554016623, 0.5138504155124654, 0.425207756232687, 0.3739612188365651, 0.07617728531855955, 0.038781163434903045, 0.1592797783933518, 0.0443213296398892, 0.045706371191135735, 0.04293628808864266, 0.03185595567867036, 0.036011080332409975, 0.4085872576177285, 0.39473684210526316, 0.9196675900277008, 0.44598337950138506, 0.04016620498614958, 0.018005540166204988, 0.01662049861495845, 0.015235457063711912, 0.013850415512465374, 0.9404432132963989, 0.013850415512465374, 0.013850415512465374, 0.013850415512465374, 0.012465373961218837, 0.013850415512465374, 0.029085872576177285, 0.062326869806094184, 0.02077562326869806, 0.02631578947368421, 0.027700831024930747, 0.02077562326869806, 0.01662049861495845, 0.01662049861495845, 0.018005540166204988, 0.015235457063711912, 0.015235457063711912, 0.015235457063711912, 0.2451523545706371, 0.2853185595567867, 0.5637119113573407, 0.631578947368421, 0.6634349030470914, 0.9168975069252078, 0.6883656509695291, 0.6592797783933518, 0.6094182825484764, 0.3060941828254848, 0.26177285318559557, 0.04986149584487535, 0.013850415512465374, 0.12049861495844875, 0.0221606648199446, 0.6523545706371191, 0.015235457063711912, 0.015235457063711912, 0.015235457063711912, 0.015235457063711912, 0.013850415512465374, 0.015235457063711912, 0.9002770083102493, 0.015235457063711912, 0.015235457063711912, 0.015235457063711912, 0.013850415512465374, 0.013850415512465374, 0.013850415512465374, 0.012465373961218837, 0.012465373961218837, 0.0110803324099723, 0.0110803324099723, 0.0110803324099723, 0.012465373961218837, 0.012465373961218837, 0.012465373961218837, 0.012465373961218837, 0.013850415512465374, 0.019390581717451522, 0.027700831024930747, 0.03185595567867036, 0.14127423822714683, 0.2188365650969529, 0.10941828254847645, 0.009695290858725761, 0.009695290858725761, 0.009695290858725761, 0.0110803324099723, 0.012465373961218837, 0.0110803324099723, 0.0110803324099723, 0.0110803324099723, 0.0110803324099723, 0.0110803324099723, 0.0110803324099723, 0.012465373961218837, 0.013850415512465374, 0.013850415512465374, 0.013850415512465374, 0.0221606648199446, 0.024930747922437674, 0.029085872576177285, 0.6703601108033241, 0.6509695290858726, 0.02631578947368421, 0.9196675900277008, 0.945983379501385, 0.8961218836565097, 0.036011080332409975, 0.09695290858725762, 0.07617728531855955, 0.1786703601108033, 0.08587257617728532, 0.05955678670360111, 0.05678670360110803, 0.04709141274238227, 0.889196675900277, 0.04155124653739612, 0.037396121883656507, 0.036011080332409975, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.03462603878116344, 0.036011080332409975, 0.04016620498614958, 0.04155124653739612, 0.0443213296398892, 0.05263157894736842, 0.0664819944598338, 0.08448753462603878, 0.08725761772853186, 0.09418282548476455, 0.10526315789473684, 0.12465373961218837, 0.17590027700831026, 0.2257617728531856, 0.3060941828254848, 0.5720221606648199], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF538.gap.json b/pfam_gap_rates/DUF538.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f3bdcf420b0bc3c04735d553c8bfc78f8cff491
--- /dev/null
+++ b/pfam_gap_rates/DUF538.gap.json
@@ -0,0 +1 @@
+{"family": "DUF538", "n_seqs": 692, "length": 119, "gap_rates": [0.7369942196531792, 0.4147398843930636, 0.1546242774566474, 0.08959537572254335, 0.08526011560693642, 0.08526011560693642, 0.07947976878612717, 0.07658959537572255, 0.07514450867052024, 0.07369942196531792, 0.07369942196531792, 0.06936416184971098, 0.06502890173410404, 0.06502890173410404, 0.06358381502890173, 0.06069364161849711, 0.6546242774566474, 0.06069364161849711, 0.057803468208092484, 0.057803468208092484, 0.05491329479768786, 0.05202312138728324, 0.05057803468208093, 0.049132947976878616, 0.0476878612716763, 0.046242774566473986, 0.046242774566473986, 0.26734104046242774, 0.05635838150289017, 0.046242774566473986, 0.046242774566473986, 0.046242774566473986, 0.044797687861271675, 0.04335260115606936, 0.04335260115606936, 0.04335260115606936, 0.04046242774566474, 0.20520231213872833, 0.17052023121387283, 0.04190751445086705, 0.03901734104046243, 0.03757225433526012, 0.03757225433526012, 0.03757225433526012, 0.15606936416184972, 0.7933526011560693, 0.6083815028901735, 0.588150289017341, 0.43352601156069365, 0.1430635838150289, 0.033236994219653176, 0.023121387283236993, 0.023121387283236993, 0.024566473988439308, 0.02167630057803468, 0.02023121387283237, 0.02167630057803468, 0.02167630057803468, 0.02167630057803468, 0.02023121387283237, 0.01878612716763006, 0.01878612716763006, 0.01878612716763006, 0.017341040462427744, 0.01878612716763006, 0.017341040462427744, 0.017341040462427744, 0.014450867052023121, 0.014450867052023121, 0.014450867052023121, 0.014450867052023121, 0.017341040462427744, 0.015895953757225433, 0.017341040462427744, 0.01878612716763006, 0.01878612716763006, 0.02167630057803468, 0.02167630057803468, 0.02167630057803468, 0.1907514450867052, 0.057803468208092484, 0.059248554913294796, 0.057803468208092484, 0.028901734104046242, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.4277456647398844, 0.9393063583815029, 0.36127167630057805, 0.33236994219653176, 0.03757225433526012, 0.03901734104046243, 0.03901734104046243, 0.04046242774566474, 0.04190751445086705, 0.04190751445086705, 0.04190751445086705, 0.7442196531791907, 0.703757225433526, 0.04335260115606936, 0.04335260115606936, 0.05057803468208093, 0.4277456647398844, 0.9393063583815029, 0.05202312138728324, 0.05202312138728324, 0.05202312138728324, 0.05635838150289017, 0.059248554913294796, 0.059248554913294796, 0.06358381502890173, 0.06502890173410404, 0.07225433526011561, 0.08092485549132948, 0.4277456647398844], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF565.gap.json b/pfam_gap_rates/DUF565.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c2042142a45b257e321dbbbfb053718375a4f7e
--- /dev/null
+++ b/pfam_gap_rates/DUF565.gap.json
@@ -0,0 +1 @@
+{"family": "DUF565", "n_seqs": 166, "length": 72, "gap_rates": [0.3493975903614458, 0.3433734939759036, 0.1144578313253012, 0.0783132530120482, 0.05421686746987952, 0.04216867469879518, 0.03614457831325301, 0.024096385542168676, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.9397590361445783, 0.9096385542168675, 0.0963855421686747, 0.8554216867469879, 0.7650602409638554, 0.3253012048192771, 0.3433734939759036, 0.2289156626506024, 0.7048192771084337, 0.8614457831325302, 0.891566265060241, 0.9216867469879518, 0.9156626506024096, 0.891566265060241, 0.7951807228915663, 0.6807228915662651, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.030120481927710843, 0.03614457831325301, 0.21084337349397592, 0.2469879518072289, 0.2710843373493976], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF573.gap.json b/pfam_gap_rates/DUF573.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37f1bf06b7fc14ff1d021d117a16cec0400a478d
--- /dev/null
+++ b/pfam_gap_rates/DUF573.gap.json
@@ -0,0 +1 @@
+{"family": "DUF573", "n_seqs": 222, "length": 103, "gap_rates": [0.49099099099099097, 0.26126126126126126, 0.18468468468468469, 0.12162162162162163, 0.0990990990990991, 0.0990990990990991, 0.09009009009009009, 0.08108108108108109, 0.08108108108108109, 0.07657657657657657, 0.07657657657657657, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.06756756756756757, 0.06756756756756757, 0.06306306306306306, 0.07207207207207207, 0.06756756756756757, 0.07207207207207207, 0.07657657657657657, 0.05855855855855856, 0.05855855855855856, 0.06306306306306306, 0.09009009009009009, 0.8603603603603603, 0.3153153153153153, 0.32882882882882886, 0.7117117117117117, 0.9279279279279279, 0.6306306306306306, 0.07657657657657657, 0.05855855855855856, 0.04504504504504504, 0.04504504504504504, 0.04054054054054054, 0.036036036036036036, 0.036036036036036036, 0.03153153153153153, 0.036036036036036036, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.06756756756756757, 0.8918918918918919, 0.02252252252252252, 0.02702702702702703, 0.02252252252252252, 0.018018018018018018, 0.9054054054054054, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.009009009009009009, 0.018018018018018018, 0.02252252252252252, 0.02252252252252252, 0.04954954954954955, 0.11261261261261261, 0.42342342342342343, 0.4369369369369369, 0.9414414414414415, 0.8108108108108109, 0.3333333333333333, 0.3063063063063063, 0.22972972972972974, 0.09009009009009009, 0.08558558558558559, 0.05855855855855856, 0.05855855855855856, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.05405405405405406, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.05855855855855856, 0.04954954954954955, 0.05405405405405406, 0.26576576576576577], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF697.gap.json b/pfam_gap_rates/DUF697.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e89ca15f7e95be759496990ea75e7f48658defdf
--- /dev/null
+++ b/pfam_gap_rates/DUF697.gap.json
@@ -0,0 +1 @@
+{"family": "DUF697", "n_seqs": 640, "length": 181, "gap_rates": [0.8390625, 0.5578125, 0.4703125, 0.41875, 0.3890625, 0.36875, 0.3578125, 0.3453125, 0.3265625, 0.309375, 0.29375, 0.278125, 0.2546875, 0.24375, 0.225, 0.196875, 0.1765625, 0.1578125, 0.1296875, 0.1171875, 0.109375, 0.0984375, 0.096875, 0.0890625, 0.08125, 0.0765625, 0.09375, 0.0828125, 0.08125, 0.0734375, 0.0703125, 0.046875, 0.04375, 0.0359375, 0.0421875, 0.0390625, 0.046875, 0.0265625, 0.0296875, 0.0359375, 0.0296875, 0.0171875, 0.0140625, 0.0140625, 0.0109375, 0.0109375, 0.0109375, 0.0109375, 0.0078125, 0.0078125, 0.009375, 0.009375, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.003125, 0.003125, 0.003125, 0.003125, 0.003125, 0.003125, 0.003125, 0.003125, 0.003125, 0.003125, 0.003125, 0.003125, 0.00625, 0.009375, 0.0109375, 0.0171875, 0.03125, 0.034375, 0.03125, 0.03125, 0.0203125, 0.021875, 0.028125, 0.0265625, 0.03125, 0.0328125, 0.034375, 0.040625, 0.0359375, 0.03125, 0.0328125, 0.0390625, 0.0546875, 0.0609375, 0.0609375, 0.04375, 0.0375, 0.03125, 0.0328125, 0.0328125, 0.03125, 0.859375, 0.8890625, 0.8671875, 0.8390625, 0.046875, 0.0546875, 0.059375, 0.0578125, 0.0734375, 0.071875, 0.0703125, 0.79375, 0.8296875, 0.8375, 0.8515625, 0.915625, 0.9359375, 0.9265625, 0.9125, 0.8421875, 0.83125, 0.821875, 0.6984375, 0.1703125, 0.1546875, 0.109375, 0.0796875, 0.0828125, 0.078125, 0.0703125, 0.05, 0.053125, 0.053125, 0.05625, 0.0609375, 0.05625, 0.0515625, 0.053125, 0.0578125, 0.059375, 0.0609375, 0.0703125, 0.065625, 0.065625, 0.065625, 0.0640625, 0.0640625, 0.065625, 0.0703125, 0.0703125, 0.0734375, 0.075, 0.075, 0.0765625, 0.090625, 0.1, 0.109375, 0.1234375, 0.440625, 0.9421875, 0.946875, 0.940625, 0.1828125, 0.178125, 0.1875, 0.20625, 0.215625, 0.5515625, 0.5296875, 0.5296875, 0.2484375, 0.2546875, 0.25625, 0.265625, 0.271875, 0.2828125, 0.2953125, 0.3125, 0.33125, 0.371875, 0.428125, 0.5390625, 0.634375, 0.903125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF702.gap.json b/pfam_gap_rates/DUF702.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af0d869d13e246d6e3d65d86059130519e447915
--- /dev/null
+++ b/pfam_gap_rates/DUF702.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF727.gap.json b/pfam_gap_rates/DUF727.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9e1aa6aca32994d425155a83cc9156d12df8842
--- /dev/null
+++ b/pfam_gap_rates/DUF727.gap.json
@@ -0,0 +1 @@
+{"family": "DUF727", "n_seqs": 269, "length": 112, "gap_rates": [0.929368029739777, 0.5613382899628253, 0.5130111524163569, 0.4944237918215613, 0.4944237918215613, 0.49070631970260226, 0.4795539033457249, 0.4758364312267658, 0.4758364312267658, 0.4721189591078067, 0.4721189591078067, 0.4721189591078067, 0.4721189591078067, 0.4758364312267658, 0.4721189591078067, 0.4721189591078067, 0.4684014869888476, 0.4684014869888476, 0.4721189591078067, 0.4721189591078067, 0.4721189591078067, 0.9479553903345725, 0.4721189591078067, 0.45353159851301117, 0.4423791821561338, 0.40892193308550184, 0.3940520446096654, 0.37174721189591076, 0.31226765799256506, 0.1412639405204461, 0.07806691449814127, 0.07063197026022305, 0.07063197026022305, 0.06319702602230483, 0.05204460966542751, 0.055762081784386616, 0.05204460966542751, 0.05204460966542751, 0.048327137546468404, 0.03345724907063197, 0.02973977695167286, 0.03345724907063197, 0.048327137546468404, 0.05204460966542751, 0.05204460966542751, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.05204460966542751, 0.05204460966542751, 0.055762081784386616, 0.055762081784386616, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.06319702602230483, 0.06319702602230483, 0.07063197026022305, 0.07806691449814127, 0.08921933085501858, 0.08550185873605948, 0.09293680297397769, 0.10037174721189591, 0.10780669144981413, 0.8921933085501859, 0.9219330855018587, 0.9405204460966543, 0.9368029739776952, 0.9144981412639405, 0.6691449814126395, 0.5762081784386617, 0.5130111524163569, 0.3382899628252788, 0.32342007434944237, 0.1895910780669145, 0.1412639405204461, 0.10408921933085502, 0.10037174721189591, 0.08921933085501858, 0.05947955390334572, 0.06319702602230483, 0.05947955390334572, 0.05947955390334572, 0.05947955390334572, 0.05947955390334572, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06319702602230483, 0.06691449814126393, 0.06691449814126393, 0.07063197026022305, 0.07434944237918216, 0.11524163568773234, 0.22676579925650558, 0.24907063197026022, 0.2788104089219331, 0.29739776951672864, 0.31226765799256506, 0.4349442379182156, 0.44981412639405205, 0.5278810408921933, 0.6319702602230484], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF799.gap.json b/pfam_gap_rates/DUF799.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..565ecef714e7085d6f220f8aabdd9765eb98c3c2
--- /dev/null
+++ b/pfam_gap_rates/DUF799.gap.json
@@ -0,0 +1 @@
+{"family": "DUF799", "n_seqs": 117, "length": 208, "gap_rates": [0.8461538461538461, 0.4700854700854701, 0.3418803418803419, 0.27350427350427353, 0.23931623931623933, 0.2222222222222222, 0.20512820512820512, 0.20512820512820512, 0.19658119658119658, 0.19658119658119658, 0.19658119658119658, 0.19658119658119658, 0.19658119658119658, 0.717948717948718, 0.905982905982906, 0.8632478632478633, 0.49572649572649574, 0.19658119658119658, 0.19658119658119658, 0.18803418803418803, 0.19658119658119658, 0.19658119658119658, 0.17094017094017094, 0.1623931623931624, 0.1623931623931624, 0.1623931623931624, 0.1452991452991453, 0.13675213675213677, 0.1282051282051282, 0.1282051282051282, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10256410256410256, 0.09401709401709402, 0.10256410256410256, 0.09401709401709402, 0.10256410256410256, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.09401709401709402, 0.08547008547008547, 0.08547008547008547, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.06837606837606838, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05128205128205128, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.03418803418803419, 0.02564102564102564, 0.02564102564102564, 0.017094017094017096, 0.008547008547008548, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.02564102564102564, 0.03418803418803419, 0.008547008547008548, 0.008547008547008548, 0.0, 0.0, 0.0, 0.008547008547008548, 0.0, 0.008547008547008548, 0.0, 0.017094017094017096, 0.008547008547008548, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008547008547008548, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008547008547008548, 0.008547008547008548, 0.02564102564102564, 0.042735042735042736, 0.08547008547008547, 0.09401709401709402, 0.05982905982905983, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.02564102564102564, 0.03418803418803419, 0.03418803418803419, 0.02564102564102564, 0.02564102564102564, 0.017094017094017096, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.03418803418803419, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.02564102564102564, 0.02564102564102564, 0.042735042735042736, 0.06837606837606838, 0.09401709401709402, 0.15384615384615385, 0.1623931623931624, 0.1794871794871795, 0.20512820512820512, 0.2222222222222222, 0.24786324786324787, 0.23931623931623933, 0.5555555555555556, 0.9401709401709402, 0.9401709401709402, 0.8974358974358975, 0.358974358974359, 0.28205128205128205, 0.26495726495726496, 0.24786324786324787, 0.24786324786324787, 0.26495726495726496, 0.24786324786324787, 0.2564102564102564, 0.2564102564102564, 0.27350427350427353, 0.28205128205128205, 0.27350427350427353, 0.27350427350427353, 0.2905982905982906, 0.29914529914529914, 0.29914529914529914, 0.29914529914529914, 0.3162393162393162, 0.3247863247863248, 0.3418803418803419, 0.358974358974359, 0.36752136752136755, 0.37606837606837606, 0.42735042735042733, 0.46153846153846156, 0.4700854700854701, 0.49572649572649574, 0.49572649572649574, 0.5042735042735043, 0.5213675213675214, 0.5213675213675214, 0.5299145299145299, 0.5299145299145299, 0.5384615384615384, 0.5555555555555556, 0.5641025641025641, 0.5641025641025641, 0.5726495726495726, 0.5726495726495726, 0.6495726495726496, 0.5982905982905983, 0.5982905982905983, 0.6068376068376068, 0.6068376068376068, 0.6068376068376068, 0.6068376068376068, 0.6068376068376068, 0.6068376068376068, 0.6153846153846154, 0.7094017094017094], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF86.gap.json b/pfam_gap_rates/DUF86.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88af430fbeabd5a89fb427279844589c49a79336
--- /dev/null
+++ b/pfam_gap_rates/DUF86.gap.json
@@ -0,0 +1 @@
+{"family": "DUF86", "n_seqs": 1225, "length": 122, "gap_rates": [0.6546938775510204, 0.506938775510204, 0.4146938775510204, 0.34530612244897957, 0.3142857142857143, 0.29061224489795917, 0.2726530612244898, 0.26040816326530614, 0.2506122448979592, 0.2416326530612245, 0.24408163265306124, 0.2473469387755102, 0.4726530612244898, 0.23020408163265307, 0.19918367346938776, 0.17877551020408164, 0.9224489795918367, 0.15918367346938775, 0.14775510204081632, 0.14530612244897959, 0.14204081632653062, 0.13959183673469389, 0.16489795918367348, 0.10204081632653061, 0.09306122448979592, 0.08571428571428572, 0.08081632653061224, 0.07755102040816327, 0.07591836734693877, 0.07265306122448979, 0.07102040816326531, 0.0653061224489796, 0.0636734693877551, 0.060408163265306125, 0.061224489795918366, 0.060408163265306125, 0.0563265306122449, 0.054693877551020405, 0.054693877551020405, 0.052244897959183675, 0.053061224489795916, 0.053061224489795916, 0.052244897959183675, 0.053061224489795916, 0.053877551020408164, 0.054693877551020405, 0.054693877551020405, 0.05551020408163265, 0.5828571428571429, 0.5820408163265306, 0.5853061224489796, 0.6040816326530613, 0.6081632653061224, 0.6073469387755102, 0.6057142857142858, 0.6057142857142858, 0.6040816326530613, 0.6040816326530613, 0.6040816326530613, 0.6040816326530613, 0.603265306122449, 0.6424489795918368, 0.6155102040816327, 0.6008163265306122, 0.6, 0.5991836734693877, 0.5983673469387755, 0.5975510204081632, 0.5746938775510204, 0.5453061224489796, 0.5436734693877551, 0.5183673469387755, 0.06938775510204082, 0.05061224489795919, 0.04897959183673469, 0.04653061224489796, 0.04816326530612245, 0.04897959183673469, 0.053877551020408164, 0.04979591836734694, 0.04244897959183674, 0.04081632653061224, 0.03836734693877551, 0.037551020408163265, 0.03346938775510204, 0.03346938775510204, 0.030204081632653063, 0.024489795918367346, 0.025306122448979593, 0.026938775510204082, 0.02857142857142857, 0.030204081632653063, 0.03183673469387755, 0.03346938775510204, 0.03346938775510204, 0.03428571428571429, 0.03510204081632653, 0.044081632653061226, 0.044897959183673466, 0.045714285714285714, 0.0473469387755102, 0.04979591836734694, 0.053877551020408164, 0.05714285714285714, 0.06693877551020408, 0.06938775510204082, 0.07265306122448979, 0.07510204081632653, 0.08244897959183674, 0.08571428571428572, 0.11510204081632654, 0.10122448979591837, 0.10448979591836735, 0.10775510204081633, 0.11346938775510204, 0.12326530612244897, 0.13387755102040816, 0.16653061224489796, 0.21387755102040817, 0.363265306122449, 0.5428571428571428, 0.8310204081632653], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF89.gap.json b/pfam_gap_rates/DUF89.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7539d92c8949c24c6376b6fa8349541f294b113e
--- /dev/null
+++ b/pfam_gap_rates/DUF89.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF932.gap.json b/pfam_gap_rates/DUF932.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3b9c90fcfb2b1197982ea2b85f0df24fdbf8479
--- /dev/null
+++ b/pfam_gap_rates/DUF932.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF936.gap.json b/pfam_gap_rates/DUF936.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f404f183283527f26fb1c1759cd2db8c72388f0
--- /dev/null
+++ b/pfam_gap_rates/DUF936.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF963.gap.json b/pfam_gap_rates/DUF963.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b2d047a86cc40d69aed0f0b0f43b3db1d971ebb
--- /dev/null
+++ b/pfam_gap_rates/DUF963.gap.json
@@ -0,0 +1 @@
+{"family": "DUF963", "n_seqs": 142, "length": 36, "gap_rates": [0.07746478873239436, 0.056338028169014086, 0.028169014084507043, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.007042253521126761, 0.007042253521126761, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007042253521126761, 0.007042253521126761, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.09154929577464789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF974.gap.json b/pfam_gap_rates/DUF974.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a843adb546eb6d7f373cd4ad45428e702806532
--- /dev/null
+++ b/pfam_gap_rates/DUF974.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF982.gap.json b/pfam_gap_rates/DUF982.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bea94b37c2ab56848287d9915eed244c5d7b4c5
--- /dev/null
+++ b/pfam_gap_rates/DUF982.gap.json
@@ -0,0 +1 @@
+{"family": "DUF982", "n_seqs": 105, "length": 74, "gap_rates": [0.47619047619047616, 0.12380952380952381, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.0761904761904762, 0.0761904761904762, 0.05714285714285714, 0.047619047619047616, 0.3047619047619048, 0.06666666666666667, 0.02857142857142857, 0.0380952380952381, 0.047619047619047616, 0.2, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.0, 0.0, 0.34285714285714286, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.638095238095238, 0.14285714285714285, 0.0, 0.009523809523809525, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.0380952380952381, 0.02857142857142857, 0.02857142857142857, 0.0380952380952381, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.047619047619047616, 0.06666666666666667, 0.29523809523809524, 0.8476190476190476], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DWNN.gap.json b/pfam_gap_rates/DWNN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e541097e002993cd6e7dbf61ae00a0a9a951bf5
--- /dev/null
+++ b/pfam_gap_rates/DWNN.gap.json
@@ -0,0 +1 @@
+{"family": "DWNN", "n_seqs": 377, "length": 77, "gap_rates": [0.05570291777188329, 0.029177718832891247, 0.026525198938992044, 0.026525198938992044, 0.026525198938992044, 0.023872679045092837, 0.023872679045092837, 0.023872679045092837, 0.023872679045092837, 0.946949602122016, 0.023872679045092837, 0.023872679045092837, 0.023872679045092837, 0.023872679045092837, 0.023872679045092837, 0.023872679045092837, 0.023872679045092837, 0.021220159151193633, 0.021220159151193633, 0.021220159151193633, 0.01856763925729443, 0.021220159151193633, 0.01856763925729443, 0.01856763925729443, 0.015915119363395226, 0.015915119363395226, 0.015915119363395226, 0.015915119363395226, 0.01856763925729443, 0.01856763925729443, 0.015915119363395226, 0.021220159151193633, 0.013262599469496022, 0.010610079575596816, 0.013262599469496022, 0.013262599469496022, 0.015915119363395226, 0.9363395225464191, 0.3076923076923077, 0.11671087533156499, 0.11405835543766578, 0.9442970822281167, 0.021220159151193633, 0.015915119363395226, 0.013262599469496022, 0.013262599469496022, 0.013262599469496022, 0.013262599469496022, 0.013262599469496022, 0.01856763925729443, 0.03713527851458886, 0.026525198938992044, 0.023872679045092837, 0.026525198938992044, 0.026525198938992044, 0.023872679045092837, 0.03183023872679045, 0.034482758620689655, 0.03978779840848806, 0.05570291777188329, 0.05305039787798409, 0.04509283819628647, 0.14058355437665782, 0.04509283819628647, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.03713527851458886, 0.03713527851458886, 0.03713527851458886, 0.042440318302387266, 0.11140583554376658], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DYW_deaminase.gap.json b/pfam_gap_rates/DYW_deaminase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e1708413b3f36c2574f768db57497b49c02a319
--- /dev/null
+++ b/pfam_gap_rates/DYW_deaminase.gap.json
@@ -0,0 +1 @@
+{"family": "DYW_deaminase", "n_seqs": 2639, "length": 127, "gap_rates": [0.46115953012504735, 0.22546419098143236, 0.1788556271314892, 0.14134141720348617, 0.13224706328154603, 0.1261841606669193, 0.1220159151193634, 0.11860553239863585, 0.1151951496779083, 0.10989010989010989, 0.10534293292913982, 0.10193255020841228, 0.09852216748768473, 0.09738537324744222, 0.0962485790071997, 0.09435392194012884, 0.09321712769988633, 0.09170140204622963, 0.09056460780598712, 0.08829101932550208, 0.08791208791208792, 0.08829101932550208, 0.08412277377794619, 0.08184918529746116, 0.08488063660477453, 0.0799545282303903, 0.08563849943160289, 0.07919666540356196, 0.07654414550966275, 0.07161803713527852, 0.06858658582796513, 0.0651762031072376, 0.06062902614626753, 0.057976506252368325, 0.055323986358469114, 0.05342932929139826, 0.05380826070481243, 0.051155740810913224, 0.04812428950359985, 0.04130352406214475, 0.042061386888973096, 0.042440318302387266, 0.04357711254262978, 0.04395604395604396, 0.04357711254262978, 0.04698749526335733, 0.04812428950359985, 0.05191360363774157, 0.054945054945054944, 0.062144751799924215, 0.0731337627889352, 0.08336491095111785, 0.08109132247063282, 0.0799545282303903, 0.07692307692307693, 0.07540735126942023, 0.07502841985600606, 0.07805987116331944, 0.10382720727548314, 0.09321712769988633, 0.16900341038272074, 0.1466464569912846, 0.9151193633952255, 0.8726790450928382, 0.09928003031451307, 0.08829101932550208, 0.07919666540356196, 0.07086017430845017, 0.06820765441455097, 0.07010231148162183, 0.06934444865479349, 0.07010231148162183, 0.07010231148162183, 0.06896551724137931, 0.06858658582796513, 0.06972338006820765, 0.06972338006820765, 0.06972338006820765, 0.07161803713527852, 0.07199696854869268, 0.07389162561576355, 0.09170140204622963, 0.08109132247063282, 0.08071239105721864, 0.07805987116331944, 0.07805987116331944, 0.07616521409624857, 0.07692307692307693, 0.07692307692307693, 0.07616521409624857, 0.07654414550966275, 0.07616521409624857, 0.07502841985600606, 0.0746494884425919, 0.07654414550966275, 0.07805987116331944, 0.0799545282303903, 0.08071239105721864, 0.08147025388404698, 0.08147025388404698, 0.08147025388404698, 0.08222811671087533, 0.08298597953770367, 0.08525956801818871, 0.08563849943160289, 0.08639636225843123, 0.08715422508525957, 0.08715422508525957, 0.08791208791208792, 0.08904888215233042, 0.09018567639257294, 0.09170140204622963, 0.09056460780598712, 0.09132247063281546, 0.09170140204622963, 0.09359605911330049, 0.09435392194012884, 0.09662751042061386, 0.0989010989010989, 0.10155361879499811, 0.10193255020841228, 0.10306934444865479, 0.1042061386888973, 0.105721864342554, 0.10685865858279651, 0.11974232663887836, 0.33573323228495644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DZF.gap.json b/pfam_gap_rates/DZF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd92b5b7609cac92ba152d13d2e9e191eb024cf9
--- /dev/null
+++ b/pfam_gap_rates/DZF.gap.json
@@ -0,0 +1 @@
+{"family": "DZF", "n_seqs": 273, "length": 251, "gap_rates": [0.358974358974359, 0.20512820512820512, 0.1978021978021978, 0.19413919413919414, 0.19413919413919414, 0.19413919413919414, 0.19413919413919414, 0.19413919413919414, 0.19413919413919414, 0.19047619047619047, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.19047619047619047, 0.19047619047619047, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.1794871794871795, 0.18315018315018314, 0.18681318681318682, 0.18681318681318682, 0.19047619047619047, 0.1978021978021978, 0.1978021978021978, 0.20146520146520147, 0.20146520146520147, 0.1978021978021978, 0.20146520146520147, 0.20146520146520147, 0.20146520146520147, 0.20146520146520147, 0.20146520146520147, 0.20512820512820512, 0.21245421245421245, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Dehydratase_MU.gap.json b/pfam_gap_rates/Dehydratase_MU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73aca88e3414b8d845d9f3e20b5b1b55e4f3fc1e
--- /dev/null
+++ b/pfam_gap_rates/Dehydratase_MU.gap.json
@@ -0,0 +1 @@
+{"family": "Dehydratase_MU", "n_seqs": 118, "length": 115, "gap_rates": [0.559322033898305, 0.16101694915254236, 0.11016949152542373, 0.1016949152542373, 0.09322033898305085, 0.09322033898305085, 0.09322033898305085, 0.09322033898305085, 0.06779661016949153, 0.05084745762711865, 0.059322033898305086, 0.05084745762711865, 0.0423728813559322, 0.4576271186440678, 0.4745762711864407, 0.4661016949152542, 0.3050847457627119, 0.09322033898305085, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0423728813559322, 0.3813559322033898, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.0, 0.0, 0.0, 0.0, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.01694915254237288, 0.3050847457627119, 0.01694915254237288, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.01694915254237288, 0.4067796610169492, 0.3474576271186441, 0.16101694915254236, 0.0423728813559322, 0.03389830508474576, 0.03389830508474576, 0.01694915254237288, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.07627118644067797, 0.6864406779661016], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DiS_P_DiS.gap.json b/pfam_gap_rates/DiS_P_DiS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb9691b06b4adda8284b7ed05d97fc1da8cfe75d
--- /dev/null
+++ b/pfam_gap_rates/DiS_P_DiS.gap.json
@@ -0,0 +1 @@
+{"family": "DiS_P_DiS", "n_seqs": 1311, "length": 111, "gap_rates": [0.2730739893211289, 0.06941266209000763, 0.05186880244088482, 0.036613272311212815, 0.031273836765827616, 0.02669717772692601, 0.02593440122044241, 0.02593440122044241, 0.02593440122044241, 0.02593440122044241, 0.02593440122044241, 0.02364607170099161, 0.02135774218154081, 0.019832189168573607, 0.019832189168573607, 0.019832189168573607, 0.01906941266209001, 0.020594965675057208, 0.02135774218154081, 0.7627765064836003, 0.7681159420289855, 0.778794813119756, 0.7864225781845919, 0.7917620137299771, 0.7948131197559115, 0.7963386727688787, 0.8001525553012967, 0.8039664378337147, 0.8100686498855835, 0.8115942028985508, 0.8954996186117468, 0.9397406559877955, 0.9435545385202135, 0.9252479023646072, 0.8611746758199847, 0.8115942028985508, 0.8070175438596491, 0.8009153318077803, 0.7986270022883295, 0.7963386727688787, 0.7940503432494279, 0.7894736842105263, 0.782608695652174, 0.7688787185354691, 0.7673531655225019, 0.7612509534706331, 0.08009153318077804, 0.02593440122044241, 0.017543859649122806, 0.01906941266209001, 0.03966437833714721, 0.01906941266209001, 0.012967200610221205, 0.013729977116704805, 0.008390541571319604, 0.008390541571319604, 0.008390541571319604, 0.012967200610221205, 0.006864988558352402, 0.006864988558352402, 0.006864988558352402, 0.006864988558352402, 0.007627765064836003, 0.007627765064836003, 0.007627765064836003, 0.006864988558352402, 0.006102212051868803, 0.005339435545385202, 0.005339435545385202, 0.004576659038901602, 0.004576659038901602, 0.0038138825324180014, 0.0038138825324180014, 0.0038138825324180014, 0.005339435545385202, 0.006102212051868803, 0.006864988558352402, 0.008390541571319604, 0.006102212051868803, 0.004576659038901602, 0.005339435545385202, 0.004576659038901602, 0.004576659038901602, 0.004576659038901602, 0.005339435545385202, 0.004576659038901602, 0.004576659038901602, 0.004576659038901602, 0.004576659038901602, 0.004576659038901602, 0.005339435545385202, 0.004576659038901602, 0.004576659038901602, 0.004576659038901602, 0.005339435545385202, 0.006102212051868803, 0.005339435545385202, 0.005339435545385202, 0.006102212051868803, 0.006102212051868803, 0.006102212051868803, 0.006864988558352402, 0.008390541571319604, 0.009916094584286803, 0.012967200610221205, 0.019832189168573607, 0.038901601830663615, 0.11060259344012205, 0.22730739893211288, 0.4477498093058734, 0.662090007627765], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dioxygenase_C.gap.json b/pfam_gap_rates/Dioxygenase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b863f3687cf2de144f655a6cb6e388a5df38f14
--- /dev/null
+++ b/pfam_gap_rates/Dioxygenase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Dioxygenase_C", "n_seqs": 1289, "length": 211, "gap_rates": [0.7595034910783554, 0.4615981380915438, 0.3048875096974399, 0.28937160589604344, 0.2885958107059736, 0.2878200155159038, 0.287044220325834, 0.287044220325834, 0.3700543056633049, 0.8440651667959659, 0.8246702870442203, 0.3661753297129558, 0.3669511249030256, 0.36772692009309543, 0.36229635376260666, 0.28937160589604344, 0.26532195500387895, 0.2560124127230411, 0.24670287044220326, 0.24204809930178434, 0.24282389449185415, 0.24049650892164467, 0.23506594259115593, 0.5151280062063616, 0.3537626066718386, 0.8339798293250582, 0.1264546159813809, 0.1008533747090768, 0.07447633824670287, 0.06516679596586501, 0.05896043444530644, 0.04034134988363072, 0.028704422032583398, 0.02404965089216447, 0.023273855702094646, 0.02404965089216447, 0.023273855702094646, 0.022498060512024826, 0.022498060512024826, 0.02094647013188518, 0.02094647013188518, 0.9208688906128782, 0.022498060512024826, 0.9239720713731575, 0.02017067494181536, 0.8906128782001551, 0.019394879751745538, 0.02094647013188518, 0.019394879751745538, 0.02017067494181536, 0.017067494181536073, 0.02017067494181536, 0.017843289371605897, 0.016291698991466253, 0.015515903801396431, 0.015515903801396431, 0.015515903801396431, 0.015515903801396431, 0.015515903801396431, 0.015515903801396431, 0.015515903801396431, 0.015515903801396431, 0.01474010861132661, 0.013964313421256789, 0.01474010861132661, 0.017067494181536073, 0.018619084561675717, 0.019394879751745538, 0.026377036462373934, 0.03180760279286268, 0.04266873545384019, 0.05430566330488751, 0.4972847168347556, 0.3809154383242824, 0.11559348332040341, 0.0791311093871218, 0.9371605896043445, 0.6718386346004654, 0.07059736229635376, 0.057408844065166796, 0.05663304887509697, 0.03801396431342126, 0.03335919317300233, 0.6237393328161366, 0.943366951124903, 0.948021722265322, 0.8921644685802949, 0.6105508145849495, 0.032583397982932506, 0.03180760279286268, 0.03180760279286268, 0.031031807602792862, 0.031031807602792862, 0.02948021722265322, 0.028704422032583398, 0.02948021722265322, 0.027928626842513578, 0.02948021722265322, 0.028704422032583398, 0.028704422032583398, 0.027928626842513578, 0.028704422032583398, 0.02948021722265322, 0.02948021722265322, 0.028704422032583398, 0.028704422032583398, 0.027928626842513578, 0.031031807602792862, 0.04654771140418929, 0.057408844065166796, 0.1287820015515904, 0.1466252909231963, 0.17377812257564004, 0.6237393328161366, 0.5981380915438325, 0.5981380915438325, 0.6082234290147401, 0.5989138867339022, 0.604344453064391, 0.6058960434445306, 0.6066718386346005, 0.6183087664856478, 0.6214119472459271, 0.6214119472459271, 0.4499612102404965, 0.4321179208688906, 0.41582622187742435, 0.395655546935609, 0.38013964313421256, 0.3646237393328161, 0.33281613653995346, 0.2808378588052754, 0.2575640031031808, 0.2575640031031808, 0.2583397982932506, 0.2583397982932506, 0.25678820791311097, 0.2591155934833204, 0.2637703646237393, 0.26454615981380913, 0.26532195500387895, 0.2692009309542281, 0.2699767261442979, 0.7207137315748642, 0.2692009309542281, 0.2699767261442979, 0.2699767261442979, 0.2699767261442979, 0.2699767261442979, 0.2707525213343677, 0.2730799069045772, 0.273855702094647, 0.2746314972847168, 0.27851047323506595, 0.2932505818463926, 0.30721489526764933, 0.31885182311869664, 0.32195500387897596, 0.3242823894491854, 0.32893716058960437, 0.9387121799844841, 0.7339022498060512, 0.33669511249030254, 0.33747090768037236, 0.33824670287044223, 0.3405740884406517, 0.3475562451512801, 0.3599689681923972, 0.7540729247478666, 0.764934057408844, 0.8200155159038014, 0.7587276958882855, 0.7470907680372382, 0.37238169123351433, 0.3700543056633049, 0.36772692009309543, 0.36850271528316525, 0.36850271528316525, 0.3700543056633049, 0.3708301008533747, 0.37548487199379366, 0.3809154383242824, 0.3878975950349108, 0.395655546935609, 0.4003103180760279, 0.4034134988363072, 0.4034134988363072, 0.41117145073700545, 0.834755624515128, 0.8440651667959659, 0.8502715283165244, 0.8937160589604345, 0.8525989138867339, 0.8463925523661753, 0.8401861908456167, 0.8269976726144298, 0.5290923196276183, 0.525989138867339, 0.5275407292474786, 0.4910783553141971, 0.44685802948021724, 0.43987587276958884, 0.43444530643910007, 0.4375484871993794, 0.4383242823894492, 0.44608223429014743, 0.4499612102404965, 0.4538401861908456, 0.4615981380915438, 0.5996896819239721, 0.8836307214895268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DnaG_DnaB_bind.gap.json b/pfam_gap_rates/DnaG_DnaB_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f39cabd7f564eee16141309d34f7edca8d92a40
--- /dev/null
+++ b/pfam_gap_rates/DnaG_DnaB_bind.gap.json
@@ -0,0 +1 @@
+{"family": "DnaG_DnaB_bind", "n_seqs": 414, "length": 148, "gap_rates": [0.41545893719806765, 0.18115942028985507, 0.0821256038647343, 0.026570048309178744, 0.021739130434782608, 0.014492753623188406, 0.012077294685990338, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.012077294685990338, 0.014492753623188406, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.012077294685990338, 0.014492753623188406, 0.9444444444444444, 0.8357487922705314, 0.10144927536231885, 0.06280193236714976, 0.01932367149758454, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.857487922705314, 0.9299516908212561, 0.9444444444444444, 0.8768115942028986, 0.714975845410628, 0.024154589371980676, 0.08454106280193237, 0.16183574879227053, 0.9492753623188406, 0.09178743961352658, 0.07004830917874397, 0.043478260869565216, 0.9492753623188406, 0.8743961352657005, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.007246376811594203, 0.00966183574879227, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.6811594202898551, 0.00966183574879227, 0.004830917874396135, 0.6183574879227053, 0.9227053140096618, 0.7101449275362319, 0.5869565217391305, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.004830917874396135, 0.004830917874396135, 0.00966183574879227, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.00966183574879227, 0.014492753623188406, 0.012077294685990338, 0.012077294685990338, 0.00966183574879227, 0.024154589371980676, 0.5869565217391305, 0.8888888888888888, 0.9202898550724637, 0.9009661835748792, 0.8067632850241546, 0.1280193236714976, 0.016908212560386472, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.9468599033816425, 0.9323671497584541, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.014492753623188406, 0.016908212560386472, 0.01932367149758454, 0.01932367149758454, 0.021739130434782608, 0.024154589371980676, 0.026570048309178744, 0.07004830917874397, 0.08454106280193237, 0.49516908212560384, 0.9178743961352657, 0.5966183574879227, 0.08695652173913043, 0.07004830917874397, 0.07971014492753623, 0.6400966183574879, 0.11594202898550725, 0.12077294685990338, 0.13043478260869565, 0.14251207729468598, 0.16666666666666666, 0.178743961352657, 0.19806763285024154, 0.2222222222222222, 0.27053140096618356, 0.38164251207729466, 0.5265700483091788], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DnaJ.gap.json b/pfam_gap_rates/DnaJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe8cd0ff77cbd17ab36437ac3c081ae0871a2511
--- /dev/null
+++ b/pfam_gap_rates/DnaJ.gap.json
@@ -0,0 +1 @@
+{"family": "DnaJ", "n_seqs": 5000, "length": 72, "gap_rates": [0.3322, 0.1234, 0.1074, 0.0786, 0.0592, 0.0514, 0.0488, 0.0472, 0.0446, 0.0414, 0.0364, 0.948, 0.0306, 0.0258, 0.0236, 0.0222, 0.0214, 0.0202, 0.0166, 0.0152, 0.0128, 0.0132, 0.0124, 0.0114, 0.0096, 0.007, 0.0042, 0.003, 0.0022, 0.0052, 0.0036, 0.0032, 0.0022, 0.0044, 0.8738, 0.9128, 0.9352, 0.8984, 0.86, 0.3534, 0.13, 0.1232, 0.0546, 0.8524, 0.9296, 0.7256, 0.04, 0.0382, 0.0364, 0.0172, 0.019, 0.0194, 0.0192, 0.0192, 0.0208, 0.0212, 0.0234, 0.0244, 0.0254, 0.0274, 0.0394, 0.0488, 0.0668, 0.0962, 0.1318, 0.1522, 0.1656, 0.1816, 0.1952, 0.2108, 0.22, 0.2606], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DotU.gap.json b/pfam_gap_rates/DotU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02f95b7d9c744079516746108597bce5ed106d75
--- /dev/null
+++ b/pfam_gap_rates/DotU.gap.json
@@ -0,0 +1 @@
+{"family": "DotU", "n_seqs": 300, "length": 222, "gap_rates": [0.6466666666666666, 0.29333333333333333, 0.24666666666666667, 0.21333333333333335, 0.19666666666666666, 0.17666666666666667, 0.17333333333333334, 0.17, 0.15333333333333332, 0.15, 0.14666666666666667, 0.14, 0.14, 0.14, 0.14, 0.13333333333333333, 0.13, 0.14333333333333334, 0.13333333333333333, 0.12333333333333334, 0.11333333333333333, 0.8733333333333333, 0.9466666666666667, 0.8, 0.12666666666666668, 0.1, 0.1, 0.09666666666666666, 0.08, 0.07, 0.07, 0.07, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06333333333333334, 0.06333333333333334, 0.06333333333333334, 0.06333333333333334, 0.06333333333333334, 0.07, 0.07, 0.06666666666666667, 0.07, 0.06333333333333334, 0.06333333333333334, 0.06333333333333334, 0.06333333333333334, 0.08, 0.06333333333333334, 0.056666666666666664, 0.05, 0.04, 0.03666666666666667, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.05, 0.043333333333333335, 0.04666666666666667, 0.05, 0.05333333333333334, 0.9466666666666667, 0.94, 0.04666666666666667, 0.04, 0.03666666666666667, 0.05, 0.06333333333333334, 0.05333333333333334, 0.05, 0.043333333333333335, 0.043333333333333335, 0.043333333333333335, 0.04666666666666667, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.043333333333333335, 0.043333333333333335, 0.043333333333333335, 0.043333333333333335, 0.04, 0.03666666666666667, 0.03666666666666667, 0.93, 0.12333333333333334, 0.11333333333333333, 0.09666666666666666, 0.04666666666666667, 0.043333333333333335, 0.043333333333333335, 0.056666666666666664, 0.06, 0.03666666666666667, 0.03333333333333333, 0.03333333333333333, 0.03666666666666667, 0.03666666666666667, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03333333333333333, 0.03333333333333333, 0.03, 0.043333333333333335, 0.056666666666666664, 0.05333333333333334, 0.2733333333333333, 0.25666666666666665, 0.12333333333333334, 0.12666666666666668, 0.08, 0.02666666666666667, 0.023333333333333334, 0.023333333333333334, 0.023333333333333334, 0.023333333333333334, 0.023333333333333334, 0.023333333333333334, 0.02666666666666667, 0.03, 0.03, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.10666666666666667, 0.11, 0.08666666666666667, 0.9333333333333333, 0.9333333333333333, 0.09666666666666666, 0.08666666666666667, 0.07, 0.06333333333333334, 0.18333333333333332, 0.08, 0.8266666666666667, 0.043333333333333335, 0.04, 0.04, 0.04666666666666667, 0.05333333333333334, 0.07333333333333333, 0.5833333333333334, 0.08333333333333333, 0.06666666666666667, 0.05333333333333334, 0.05333333333333334, 0.056666666666666664, 0.05333333333333334, 0.06, 0.08333333333333333, 0.23333333333333334, 0.9233333333333333, 0.9466666666666667, 0.9066666666666666, 0.14666666666666667, 0.11333333333333333, 0.91, 0.94, 0.8966666666666666, 0.08666666666666667, 0.08666666666666667, 0.08333333333333333, 0.94, 0.06, 0.95, 0.06666666666666667, 0.043333333333333335, 0.043333333333333335, 0.043333333333333335, 0.043333333333333335, 0.043333333333333335, 0.043333333333333335, 0.043333333333333335, 0.04666666666666667, 0.04666666666666667, 0.04666666666666667, 0.04666666666666667, 0.05333333333333334, 0.06333333333333334, 0.07, 0.09666666666666666, 0.15, 0.19333333333333333, 0.33, 0.5066666666666667, 0.95], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DpaA_N.gap.json b/pfam_gap_rates/DpaA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..056a902c60e8326791ca0e3703128b24ae6c4271
--- /dev/null
+++ b/pfam_gap_rates/DpaA_N.gap.json
@@ -0,0 +1 @@
+{"family": "DpaA_N", "n_seqs": 224, "length": 119, "gap_rates": [0.4732142857142857, 0.0625, 0.05357142857142857, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.05357142857142857, 0.044642857142857144, 0.03571428571428571, 0.03125, 0.03125, 0.03125, 0.03125, 0.03571428571428571, 0.04017857142857143, 0.9330357142857143, 0.45535714285714285, 0.25892857142857145, 0.21875, 0.17410714285714285, 0.16071428571428573, 0.12946428571428573, 0.10267857142857142, 0.09375, 0.07142857142857142, 0.0625, 0.05357142857142857, 0.044642857142857144, 0.026785714285714284, 0.026785714285714284, 0.03125, 0.03571428571428571, 0.044642857142857144, 0.026785714285714284, 0.022321428571428572, 0.05357142857142857, 0.022321428571428572, 0.004464285714285714, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013392857142857142, 0.008928571428571428, 0.013392857142857142, 0.017857142857142856, 0.026785714285714284, 0.022321428571428572, 0.022321428571428572, 0.017857142857142856, 0.017857142857142856, 0.022321428571428572, 0.12053571428571429, 0.09821428571428571, 0.05357142857142857, 0.07142857142857142, 0.022321428571428572, 0.017857142857142856, 0.026785714285714284, 0.022321428571428572, 0.008928571428571428, 0.4017857142857143, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004464285714285714, 0.0, 0.0, 0.004464285714285714, 0.0625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013392857142857142, 0.008928571428571428, 0.008928571428571428, 0.013392857142857142, 0.022321428571428572, 0.03571428571428571, 0.044642857142857144, 0.05357142857142857, 0.0625, 0.05357142857142857, 0.0625, 0.08035714285714286, 0.07589285714285714, 0.08482142857142858, 0.08928571428571429, 0.11160714285714286, 0.4375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dpy-30.gap.json b/pfam_gap_rates/Dpy-30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f880302773b193a2e249be18e01971255ccb14f1
--- /dev/null
+++ b/pfam_gap_rates/Dpy-30.gap.json
@@ -0,0 +1 @@
+{"family": "Dpy-30", "n_seqs": 627, "length": 42, "gap_rates": [0.5677830940988836, 0.31100478468899523, 0.17065390749601275, 0.09250398724082935, 0.044657097288676235, 0.03987240829346093, 0.03668261562998405, 0.028708133971291867, 0.025518341307814992, 0.019138755980861243, 0.017543859649122806, 0.01594896331738437, 0.012759170653907496, 0.007974481658692184, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.003189792663476874, 0.003189792663476874, 0.001594896331738437, 0.003189792663476874, 0.006379585326953748, 0.004784688995215311, 0.017543859649122806, 0.017543859649122806, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.025518341307814992, 0.02711323763955343, 0.030303030303030304, 0.044657097288676235, 0.04784688995215311, 0.05741626794258373, 0.06220095693779904, 0.08452950558213716, 0.10366826156299841, 0.16267942583732056, 0.34768740031897927, 0.7192982456140351], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DrsE_2.gap.json b/pfam_gap_rates/DrsE_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..97dd8e0418660a86cb7af31bdf17789bdabe37fa
--- /dev/null
+++ b/pfam_gap_rates/DrsE_2.gap.json
@@ -0,0 +1 @@
+{"family": "DrsE_2", "n_seqs": 549, "length": 157, "gap_rates": [0.6338797814207651, 0.4098360655737705, 0.2768670309653916, 0.2204007285974499, 0.21311475409836064, 0.19672131147540983, 0.19489981785063754, 0.19672131147540983, 0.1930783242258652, 0.20036429872495445, 0.18761384335154827, 0.19854280510018216, 0.18761384335154827, 0.2568306010928962, 0.18214936247723132, 0.18214936247723132, 0.18032786885245902, 0.18032786885245902, 0.18214936247723132, 0.18032786885245902, 0.18032786885245902, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.18032786885245902, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.1785063752276867, 0.18032786885245902, 0.18032786885245902, 0.18032786885245902, 0.18032786885245902, 0.1785063752276867, 0.18214936247723132, 0.18214936247723132, 0.18579234972677597, 0.19489981785063754, 0.21493624772313297, 0.21311475409836064, 0.21129326047358835, 0.21493624772313297, 0.2331511839708561, 0.24772313296903462, 0.25136612021857924, 0.25136612021857924, 0.2495446265938069, 0.2495446265938069, 0.24772313296903462, 0.25136612021857924, 0.2550091074681239, 0.25318761384335153, 0.25136612021857924, 0.2568306010928962, 0.2641165755919854, 0.2659380692167577, 0.29690346083788705, 0.3296903460837887, 0.36247723132969034, 0.36065573770491804, 0.3460837887067395, 0.8998178506375227, 0.30601092896174864, 0.29508196721311475, 0.29143897996357016, 0.2786885245901639, 0.26229508196721313, 0.2568306010928962, 0.23679417122040072, 0.23497267759562843, 0.23132969034608378, 0.22404371584699453, 0.2204007285974499, 0.21311475409836064, 0.1894353369763206, 0.1785063752276867, 0.1657559198542805, 0.16029143897996356, 0.14389799635701275, 0.1366120218579235, 0.13114754098360656, 0.1111111111111111, 0.10200364298724955, 0.0965391621129326, 0.0965391621129326, 0.0947176684881603, 0.0947176684881603, 0.0947176684881603, 0.09107468123861566, 0.09107468123861566, 0.09289617486338798, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09107468123861566, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.0965391621129326, 0.0965391621129326, 0.09107468123861566, 0.09107468123861566, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.7540983606557377, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09107468123861566, 0.09289617486338798, 0.09289617486338798, 0.09836065573770492, 0.10382513661202186, 0.12021857923497267, 0.12932604735883424, 0.1366120218579235, 0.14207650273224043, 0.19489981785063754, 0.26229508196721313, 0.2786885245901639, 0.39162112932604737], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DsrC.gap.json b/pfam_gap_rates/DsrC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ffe71d85f004b289cb064069dfc40df9ec858cd
--- /dev/null
+++ b/pfam_gap_rates/DsrC.gap.json
@@ -0,0 +1 @@
+{"family": "DsrC", "n_seqs": 438, "length": 109, "gap_rates": [0.7351598173515982, 0.3515981735159817, 0.2876712328767123, 0.2579908675799087, 0.2328767123287671, 0.18493150684931506, 0.1415525114155251, 0.09817351598173515, 0.0639269406392694, 0.05707762557077625, 0.05251141552511415, 0.04794520547945205, 0.04337899543378995, 0.04337899543378995, 0.0410958904109589, 0.0319634703196347, 0.02054794520547945, 0.01141552511415525, 0.0228310502283105, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.0045662100456621, 0.0045662100456621, 0.00228310502283105, 0.00228310502283105, 0.00228310502283105, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00228310502283105, 0.7100456621004566, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00228310502283105, 0.00228310502283105, 0.00684931506849315, 0.00228310502283105, 0.00684931506849315, 0.0045662100456621, 0.0045662100456621, 0.9360730593607306, 0.0091324200913242, 0.0045662100456621, 0.00228310502283105, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.3949771689497717, 0.3926940639269406, 0.3904109589041096, 0.3926940639269406, 0.3995433789954338, 0.4018264840182648, 0.3995433789954338, 0.0867579908675799, 0.01141552511415525, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.00684931506849315, 0.00684931506849315, 0.01141552511415525, 0.0228310502283105, 0.02511415525114155, 0.02054794520547945, 0.0319634703196347, 0.01598173515981735, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.01141552511415525, 0.0319634703196347, 0.07534246575342465, 0.1232876712328767, 0.21232876712328766, 0.2511415525114155, 0.2876712328767123], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/E1_UFD.gap.json b/pfam_gap_rates/E1_UFD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f03e5120b476c8ad5e3a7b084423fee3233752e
--- /dev/null
+++ b/pfam_gap_rates/E1_UFD.gap.json
@@ -0,0 +1 @@
+{"family": "E1_UFD", "n_seqs": 482, "length": 101, "gap_rates": [0.03941908713692946, 0.029045643153526972, 0.026970954356846474, 0.026970954356846474, 0.026970954356846474, 0.026970954356846474, 0.026970954356846474, 0.9087136929460581, 0.1887966804979253, 0.7883817427385892, 0.8962655601659751, 0.9045643153526971, 0.8983402489626556, 0.8775933609958506, 0.7759336099585062, 0.026970954356846474, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.022821576763485476, 0.024896265560165973, 0.022821576763485476, 0.035269709543568464, 0.043568464730290454, 0.029045643153526972, 0.2697095435684647, 0.016597510373443983, 0.014522821576763486, 0.014522821576763486, 0.014522821576763486, 0.014522821576763486, 0.012448132780082987, 0.014522821576763486, 0.016597510373443983, 0.014522821576763486, 0.014522821576763486, 0.014522821576763486, 0.014522821576763486, 0.012448132780082987, 0.012448132780082987, 0.01037344398340249, 0.01037344398340249, 0.012448132780082987, 0.016597510373443983, 0.02074688796680498, 0.3651452282157676, 0.33195020746887965, 0.05186721991701245, 0.024896265560165973, 0.02074688796680498, 0.01867219917012448, 0.014522821576763486, 0.014522821576763486, 0.024896265560165973, 0.022821576763485476, 0.024896265560165973, 0.029045643153526972, 0.03112033195020747, 0.03112033195020747, 0.03319502074688797, 0.03112033195020747, 0.03112033195020747, 0.035269709543568464, 0.03734439834024896, 0.08506224066390042, 0.1037344398340249, 0.11825726141078838, 0.13070539419087138, 0.13900414937759337, 0.12863070539419086, 0.10580912863070539, 0.08921161825726141, 0.056016597510373446, 0.043568464730290454, 0.043568464730290454, 0.043568464730290454, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.043568464730290454, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04771784232365145, 0.8651452282157677, 0.06431535269709543, 0.06224066390041494, 0.1037344398340249, 0.07053941908713693, 0.07468879668049792, 0.07261410788381743, 0.08921161825726141, 0.0912863070539419, 0.0995850622406639, 0.11618257261410789, 0.1970954356846473], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EAF.gap.json b/pfam_gap_rates/EAF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fd57c1a41737007b5ce498010d15a35ea3d20e4
--- /dev/null
+++ b/pfam_gap_rates/EAF.gap.json
@@ -0,0 +1 @@
+{"family": "EAF", "n_seqs": 275, "length": 139, "gap_rates": [0.37454545454545457, 0.2690909090909091, 0.16363636363636364, 0.15636363636363637, 0.14909090909090908, 0.14909090909090908, 0.14909090909090908, 0.14909090909090908, 0.14909090909090908, 0.16, 0.28, 0.7454545454545455, 0.7454545454545455, 0.8690909090909091, 0.8909090909090909, 0.8981818181818182, 0.9127272727272727, 0.9163636363636364, 0.9345454545454546, 0.9236363636363636, 0.9127272727272727, 0.9018181818181819, 0.8945454545454545, 0.8836363636363637, 0.8436363636363636, 0.3381818181818182, 0.14181818181818182, 0.12363636363636364, 0.11636363636363636, 0.10181818181818182, 0.10181818181818182, 0.10181818181818182, 0.10181818181818182, 0.10181818181818182, 0.09454545454545454, 0.09454545454545454, 0.09454545454545454, 0.03636363636363636, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.92, 0.8909090909090909, 0.03636363636363636, 0.04363636363636364, 0.03636363636363636, 0.04363636363636364, 0.04363636363636364, 0.02909090909090909, 0.9381818181818182, 0.02909090909090909, 0.02909090909090909, 0.025454545454545455, 0.02181818181818182, 0.01818181818181818, 0.02181818181818182, 0.9381818181818182, 0.9418181818181818, 0.8909090909090909, 0.6509090909090909, 0.2581818181818182, 0.10545454545454545, 0.4, 0.08363636363636363, 0.12, 0.17454545454545456, 0.13090909090909092, 0.02181818181818182, 0.01818181818181818, 0.01818181818181818, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.850909090909091, 0.6145454545454545, 0.05818181818181818, 0.13818181818181818, 0.5381818181818182, 0.8327272727272728, 0.32727272727272727, 0.025454545454545455, 0.03636363636363636, 0.26181818181818184, 0.8654545454545455, 0.9163636363636364, 0.9490909090909091, 0.9018181818181819, 0.6290909090909091, 0.07636363636363637, 0.025454545454545455, 0.0, 0.0, 0.0, 0.09454545454545454, 0.01090909090909091, 0.0036363636363636364, 0.007272727272727273, 0.04727272727272727, 0.8690909090909091, 0.9054545454545454, 0.9163636363636364, 0.9090909090909091, 0.8872727272727273, 0.8072727272727273, 0.025454545454545455, 0.28, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.01818181818181818, 0.014545454545454545, 0.01090909090909091, 0.01090909090909091, 0.16363636363636364, 0.16727272727272727, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.02909090909090909, 0.02909090909090909, 0.03272727272727273, 0.8618181818181818, 0.05818181818181818, 0.06909090909090909, 0.08727272727272728, 0.09454545454545454, 0.12363636363636364, 0.15636363636363637, 0.44727272727272727, 0.9490909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EBP.gap.json b/pfam_gap_rates/EBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..477d86a66b2efbdd0fe0f1ad66d021ad7ce11d8f
--- /dev/null
+++ b/pfam_gap_rates/EBP.gap.json
@@ -0,0 +1 @@
+{"family": "EBP", "n_seqs": 360, "length": 237, "gap_rates": [0.9472222222222222, 0.6222222222222222, 0.4527777777777778, 0.375, 0.35, 0.33055555555555555, 0.325, 0.3111111111111111, 0.3, 0.3, 0.2972222222222222, 0.2972222222222222, 0.2972222222222222, 0.3, 0.3, 0.2916666666666667, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.3333333333333333, 0.3527777777777778, 0.3888888888888889, 0.8305555555555556, 0.3972222222222222, 0.3888888888888889, 0.45, 0.2611111111111111, 0.21944444444444444, 0.21666666666666667, 0.19444444444444445, 0.17222222222222222, 0.16666666666666666, 0.14444444444444443, 0.14444444444444443, 0.14444444444444443, 0.14444444444444443, 0.1361111111111111, 0.1361111111111111, 0.13333333333333333, 0.14166666666666666, 0.95, 0.14166666666666666, 0.1361111111111111, 0.17222222222222222, 0.13055555555555556, 0.12222222222222222, 0.11944444444444445, 0.11388888888888889, 0.11666666666666667, 0.11388888888888889, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11944444444444445, 0.36944444444444446, 0.49722222222222223, 0.5, 0.5166666666666667, 0.9, 0.7833333333333333, 0.5083333333333333, 0.5, 0.4777777777777778, 0.39444444444444443, 0.18055555555555555, 0.10555555555555556, 0.6861111111111111, 0.6888888888888889, 0.7, 0.7027777777777777, 0.725, 0.8027777777777778, 0.8083333333333333, 0.8138888888888889, 0.8194444444444444, 0.8222222222222222, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8444444444444444, 0.8444444444444444, 0.8472222222222222, 0.8694444444444445, 0.8888888888888888, 0.8944444444444445, 0.925, 0.9416666666666667, 0.9361111111111111, 0.9027777777777778, 0.8888888888888888, 0.8722222222222222, 0.8638888888888889, 0.8472222222222222, 0.8444444444444444, 0.8444444444444444, 0.8333333333333334, 0.8333333333333334, 0.8277777777777777, 0.8222222222222222, 0.8194444444444444, 0.8111111111111111, 0.8083333333333333, 0.775, 0.725, 0.7027777777777777, 0.6944444444444444, 0.6861111111111111, 0.6833333333333333, 0.09166666666666666, 0.09444444444444444, 0.09166666666666666, 0.08888888888888889, 0.07777777777777778, 0.07222222222222222, 0.06944444444444445, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06666666666666667, 0.95, 0.06666666666666667, 0.06666666666666667, 0.07222222222222222, 0.075, 0.07222222222222222, 0.07222222222222222, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06944444444444445, 0.09722222222222222, 0.06944444444444445, 0.07222222222222222, 0.07222222222222222, 0.07777777777777778, 0.075, 0.075, 0.075, 0.075, 0.07222222222222222, 0.06944444444444445, 0.07222222222222222, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.08055555555555556, 0.075, 0.10277777777777777, 0.08611111111111111, 0.9277777777777778, 0.07222222222222222, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.07222222222222222, 0.07222222222222222, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06388888888888888, 0.058333333333333334, 0.058333333333333334, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06944444444444445, 0.06666666666666667, 0.7055555555555556, 0.9444444444444444, 0.95, 0.95, 0.95, 0.95, 0.7083333333333334, 0.7, 0.2861111111111111, 0.10555555555555556, 0.08333333333333333, 0.07222222222222222, 0.06944444444444445, 0.07222222222222222, 0.07222222222222222, 0.18611111111111112, 0.9388888888888889, 0.075, 0.07777777777777778, 0.07222222222222222, 0.07222222222222222, 0.06944444444444445, 0.06944444444444445, 0.06666666666666667, 0.06944444444444445, 0.06944444444444445, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.075, 0.075, 0.075, 0.075, 0.07777777777777778, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08888888888888889, 0.10277777777777777, 0.10555555555555556, 0.10555555555555556, 0.11388888888888889, 0.12777777777777777, 0.13055555555555556, 0.14722222222222223, 0.16944444444444445, 0.18888888888888888, 0.26666666666666666, 0.45, 0.7833333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EB_dh.gap.json b/pfam_gap_rates/EB_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87ee2c3bef58680327e00c3e8403f3316d2cc204
--- /dev/null
+++ b/pfam_gap_rates/EB_dh.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EFhand_Ca_insen.gap.json b/pfam_gap_rates/EFhand_Ca_insen.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..385b00fa039dd27bf5fb16af4538c3e00607f394
--- /dev/null
+++ b/pfam_gap_rates/EFhand_Ca_insen.gap.json
@@ -0,0 +1 @@
+{"family": "EFhand_Ca_insen", "n_seqs": 358, "length": 73, "gap_rates": [0.09217877094972067, 0.08100558659217877, 0.05865921787709497, 0.036312849162011177, 0.030726256983240222, 0.027932960893854747, 0.027932960893854747, 0.027932960893854747, 0.027932960893854747, 0.027932960893854747, 0.027932960893854747, 0.027932960893854747, 0.027932960893854747, 0.027932960893854747, 0.027932960893854747, 0.776536312849162, 0.027932960893854747, 0.027932960893854747, 0.025139664804469275, 0.019553072625698324, 0.0111731843575419, 0.01675977653631285, 0.0111731843575419, 0.013966480446927373, 0.013966480446927373, 0.01675977653631285, 0.013966480446927373, 0.013966480446927373, 0.008379888268156424, 0.013966480446927373, 0.013966480446927373, 0.013966480446927373, 0.013966480446927373, 0.013966480446927373, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.6843575418994413, 0.013966480446927373, 0.013966480446927373, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.019553072625698324, 0.025139664804469275, 0.055865921787709494, 0.08100558659217877, 0.09497206703910614, 0.8128491620111732, 0.6759776536312849, 0.5391061452513967, 0.5139664804469274, 0.13687150837988826, 0.10335195530726257, 0.09217877094972067, 0.055865921787709494, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.04748603351955307, 0.05027932960893855, 0.05027932960893855, 0.05307262569832402, 0.055865921787709494, 0.05865921787709497, 0.06983240223463687, 0.0893854748603352, 0.19273743016759776, 0.4273743016759777], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EIF_2_alpha.gap.json b/pfam_gap_rates/EIF_2_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b55cda9e2d8f04744208e577d8ffbcb985a23d4
--- /dev/null
+++ b/pfam_gap_rates/EIF_2_alpha.gap.json
@@ -0,0 +1 @@
+{"family": "EIF_2_alpha", "n_seqs": 459, "length": 144, "gap_rates": [0.3485838779956427, 0.1786492374727669, 0.11328976034858387, 0.08278867102396514, 0.06318082788671024, 0.058823529411764705, 0.054466230936819175, 0.05010893246187364, 0.0457516339869281, 0.04357298474945534, 0.04357298474945534, 0.04357298474945534, 0.04357298474945534, 0.0457516339869281, 0.04357298474945534, 0.8017429193899782, 0.9368191721132898, 0.8148148148148148, 0.8017429193899782, 0.04139433551198257, 0.04139433551198257, 0.04139433551198257, 0.04139433551198257, 0.04139433551198257, 0.8257080610021786, 0.04139433551198257, 0.04139433551198257, 0.032679738562091505, 0.030501089324618737, 0.030501089324618737, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.934640522875817, 0.6666666666666666, 0.032679738562091505, 0.034858387799564274, 0.034858387799564274, 0.032679738562091505, 0.06318082788671024, 0.06535947712418301, 0.8649237472766884, 0.8823529411764706, 0.8845315904139434, 0.8888888888888888, 0.8888888888888888, 0.8976034858387799, 0.8997821350762527, 0.9019607843137255, 0.9041394335511983, 0.906318082788671, 0.9041394335511983, 0.8997821350762527, 0.8976034858387799, 0.8910675381263616, 0.8888888888888888, 0.8845315904139434, 0.8845315904139434, 0.8823529411764706, 0.8540305010893247, 0.0457516339869281, 0.0392156862745098, 0.8649237472766884, 0.032679738562091505, 0.034858387799564274, 0.9498910675381264, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.034858387799564274, 0.030501089324618737, 0.030501089324618737, 0.030501089324618737, 0.032679738562091505, 0.02832244008714597, 0.02832244008714597, 0.015250544662309368, 0.015250544662309368, 0.015250544662309368, 0.017429193899782137, 0.017429193899782137, 0.0196078431372549, 0.0196078431372549, 0.02178649237472767, 0.02178649237472767, 0.02178649237472767, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.02178649237472767, 0.0196078431372549, 0.023965141612200435, 0.02178649237472767, 0.02178649237472767, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.026143790849673203, 0.026143790849673203, 0.05010893246187364, 0.05228758169934641, 0.058823529411764705, 0.06100217864923747, 0.1437908496732026, 0.16122004357298475, 0.20697167755991286, 0.20915032679738563, 0.20043572984749455, 0.8649237472766884, 0.8082788671023965, 0.7690631808278867, 0.7189542483660131, 0.681917211328976, 0.030501089324618737, 0.030501089324618737, 0.02832244008714597, 0.02832244008714597, 0.02832244008714597, 0.032679738562091505, 0.034858387799564274, 0.034858387799564274, 0.034858387799564274, 0.034858387799564274, 0.034858387799564274, 0.037037037037037035, 0.037037037037037035, 0.04357298474945534, 0.04357298474945534, 0.04357298474945534, 0.0457516339869281, 0.04793028322440087, 0.054466230936819175, 0.08932461873638345, 0.12636165577342048, 0.3485838779956427], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ELFV_dehydrog_N.gap.json b/pfam_gap_rates/ELFV_dehydrog_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6448bb3950497ae84716b71d4b24ec4ea529b7ed
--- /dev/null
+++ b/pfam_gap_rates/ELFV_dehydrog_N.gap.json
@@ -0,0 +1 @@
+{"family": "ELFV_dehydrog_N", "n_seqs": 3106, "length": 135, "gap_rates": [0.4207984546039923, 0.33419188667095945, 0.2446877012234385, 0.2189311010946555, 0.20186735350933677, 0.19671603348358016, 0.18931101094655506, 0.1828718609143593, 0.1728911783644559, 0.16806181584030908, 0.23084352865421764, 0.22858982614294912, 0.24018029620090148, 0.13844172569220864, 0.12395363811976819, 0.11558274307791372, 0.23953638119768192, 0.22730199613650998, 0.2163554410817772, 0.19188667095943335, 0.04475209272376046, 0.03831294269156471, 0.03670315518351577, 0.03316162266580811, 0.030264005151320026, 0.02962009014810045, 0.028976175144880875, 0.027688345138441726, 0.028010302640051513, 0.026722472633612365, 0.026400515132002575, 0.025756600128783, 0.02446877012234385, 0.02350289761751449, 0.022858982614294913, 0.022215067611075338, 0.021571152607855762, 0.02189311010946555, 0.02189311010946555, 0.02189311010946555, 0.022215067611075338, 0.021571152607855762, 0.021249195106245976, 0.0206052801030264, 0.019961365099806824, 0.019639407598197038, 0.019639407598197038, 0.019961365099806824, 0.8296844816484225, 0.8309723116548615, 0.8296844816484225, 0.8290405666452029, 0.020283322601416614, 0.019639407598197038, 0.019961365099806824, 0.019639407598197038, 0.019961365099806824, 0.020283322601416614, 0.019961365099806824, 0.020283322601416614, 0.018351577591757887, 0.018673535093367676, 0.018673535093367676, 0.019317450096587252, 0.018673535093367676, 0.018995492594977462, 0.0180296200901481, 0.018351577591757887, 0.018351577591757887, 0.019317450096587252, 0.017385705086928525, 0.016097875080489377, 0.016097875080489377, 0.015775917578879587, 0.015775917578879587, 0.016097875080489377, 0.016097875080489377, 0.016419832582099163, 0.01674179008370895, 0.02414681262073406, 0.02092723760463619, 0.021571152607855762, 0.02092723760463619, 0.022215067611075338, 0.022858982614294913, 0.021249195106245976, 0.022858982614294913, 0.022537025112685124, 0.02350289761751449, 0.025756600128783, 0.026400515132002575, 0.022858982614294913, 0.019961365099806824, 0.017707662588538314, 0.0180296200901481, 0.01674179008370895, 0.017385705086928525, 0.01706374758531874, 0.015775917578879587, 0.01706374758531874, 0.016419832582099163, 0.01674179008370895, 0.01706374758531874, 0.7215067611075338, 0.9008370895041854, 0.02414681262073406, 0.02189311010946555, 0.03187379265936896, 0.19929169349645848, 0.1828718609143593, 0.18254990341274951, 0.18126207340631037, 0.18158403090792016, 0.1751448808757244, 0.028976175144880875, 0.037025112685125566, 0.03766902768834514, 0.037990985189954925, 0.038634900193174504, 0.039278815196394076, 0.03895685769478429, 0.03992273019961365, 0.04024468770122344, 0.04185447520927238, 0.044430135222150675, 0.04764971023824855, 0.05183515775917579, 0.054732775273663874, 0.05730843528654218, 0.061171925305859624, 0.07308435286542177, 0.08564069542820348, 0.1081777205408886, 0.18995492594977462, 0.5399227301996137], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EOS1.gap.json b/pfam_gap_rates/EOS1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea59ef86e09d0285e44e45af9c4455dcd054f494
--- /dev/null
+++ b/pfam_gap_rates/EOS1.gap.json
@@ -0,0 +1 @@
+{"family": "EOS1", "n_seqs": 114, "length": 209, "gap_rates": [0.5614035087719298, 0.41228070175438597, 0.38596491228070173, 0.3157894736842105, 0.2631578947368421, 0.2543859649122807, 0.2543859649122807, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.23684210526315788, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.23684210526315788, 0.21929824561403508, 0.21052631578947367, 0.20175438596491227, 0.19298245614035087, 0.19298245614035087, 0.19298245614035087, 0.19298245614035087, 0.15789473684210525, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.8157894736842105, 0.7105263157894737, 0.5, 0.2982456140350877, 0.14912280701754385, 0.14912280701754385, 0.13157894736842105, 0.14035087719298245, 0.14912280701754385, 0.14912280701754385, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.16666666666666666, 0.15789473684210525, 0.15789473684210525, 0.17543859649122806, 0.18421052631578946, 0.18421052631578946, 0.18421052631578946, 0.19298245614035087, 0.24561403508771928, 0.2807017543859649, 0.42105263157894735, 0.4473684210526316, 0.4473684210526316, 0.4473684210526316, 0.4473684210526316, 0.4473684210526316, 0.4473684210526316, 0.4473684210526316, 0.45614035087719296, 0.49122807017543857, 0.543859649122807, 0.6754385964912281, 0.6754385964912281, 0.6929824561403509, 0.7982456140350878, 0.8245614035087719, 0.8333333333333334, 0.8421052631578947, 0.8421052631578947, 0.8333333333333334, 0.9473684210526315, 0.9385964912280702, 0.868421052631579, 0.8596491228070176, 0.8596491228070176, 0.8421052631578947, 0.8508771929824561, 0.8421052631578947, 0.8508771929824561, 0.8245614035087719, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.9298245614035088, 0.9298245614035088, 0.9385964912280702, 0.9385964912280702, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.9385964912280702, 0.9385964912280702, 0.9385964912280702, 0.9298245614035088, 0.9210526315789473, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.9122807017543859, 0.8157894736842105, 0.8333333333333334, 0.8245614035087719, 0.8070175438596491, 0.7982456140350878, 0.8070175438596491, 0.8157894736842105, 0.7982456140350878, 0.7894736842105263, 0.7894736842105263, 0.8508771929824561, 0.8333333333333334, 0.8245614035087719, 0.7982456140350878, 0.7807017543859649, 0.7719298245614035, 0.7982456140350878, 0.8070175438596491, 0.8070175438596491, 0.8245614035087719, 0.8157894736842105, 0.8157894736842105, 0.7982456140350878, 0.9298245614035088, 0.9385964912280702, 0.9473684210526315, 0.9385964912280702, 0.9298245614035088, 0.8245614035087719, 0.7807017543859649, 0.7719298245614035, 0.7631578947368421, 0.7631578947368421, 0.7631578947368421, 0.7280701754385965, 0.6578947368421053, 0.6666666666666666, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6578947368421053, 0.6666666666666666, 0.6666666666666666, 0.6666666666666666, 0.6666666666666666, 0.6666666666666666, 0.6666666666666666, 0.6666666666666666, 0.6666666666666666, 0.7105263157894737, 0.7543859649122807, 0.7543859649122807, 0.7719298245614035], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ERGIC_N.gap.json b/pfam_gap_rates/ERGIC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ffe4e60923218438837bd98362cef8bb8ff1046
--- /dev/null
+++ b/pfam_gap_rates/ERGIC_N.gap.json
@@ -0,0 +1 @@
+{"family": "ERGIC_N", "n_seqs": 830, "length": 95, "gap_rates": [0.2891566265060241, 0.14698795180722893, 0.10240963855421686, 0.08433734939759036, 0.07951807228915662, 0.07590361445783132, 0.07349397590361446, 0.06987951807228916, 0.06626506024096386, 0.05903614457831325, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05060240963855422, 0.9337349397590361, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04939759036144578, 0.04939759036144578, 0.04939759036144578, 0.04819277108433735, 0.04578313253012048, 0.04578313253012048, 0.04578313253012048, 0.04457831325301205, 0.043373493975903614, 0.043373493975903614, 0.043373493975903614, 0.04096385542168675, 0.03493975903614458, 0.03253012048192771, 0.03253012048192771, 0.03253012048192771, 0.030120481927710843, 0.027710843373493974, 0.02650602409638554, 0.02650602409638554, 0.02530120481927711, 0.02530120481927711, 0.02530120481927711, 0.024096385542168676, 0.02530120481927711, 0.021686746987951807, 0.021686746987951807, 0.02289156626506024, 0.021686746987951807, 0.01566265060240964, 0.014457831325301205, 0.012048192771084338, 0.00963855421686747, 0.00963855421686747, 0.00963855421686747, 0.010843373493975903, 0.9421686746987952, 0.9433734939759036, 0.9409638554216867, 0.00963855421686747, 0.010843373493975903, 0.010843373493975903, 0.00963855421686747, 0.8602409638554217, 0.00963855421686747, 0.010843373493975903, 0.007228915662650603, 0.007228915662650603, 0.008433734939759036, 0.008433734939759036, 0.00963855421686747, 0.00963855421686747, 0.014457831325301205, 0.014457831325301205, 0.014457831325301205, 0.28072289156626506, 0.016867469879518072, 0.018072289156626505, 0.018072289156626505, 0.020481927710843374, 0.02289156626506024, 0.02289156626506024, 0.027710843373493974, 0.03253012048192771, 0.03734939759036145, 0.04819277108433735, 0.046987951807228916, 0.04939759036144578, 0.051807228915662654, 0.05421686746987952, 0.06265060240963856, 0.06867469879518072, 0.09759036144578313, 0.1674698795180723, 0.4072289156626506], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ER_lumen_recept.gap.json b/pfam_gap_rates/ER_lumen_recept.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58d193391cebf738c1949bdc0c013d7e5ba48e7e
--- /dev/null
+++ b/pfam_gap_rates/ER_lumen_recept.gap.json
@@ -0,0 +1 @@
+{"family": "ER_lumen_recept", "n_seqs": 738, "length": 163, "gap_rates": [0.17344173441734417, 0.12601626016260162, 0.11517615176151762, 0.1016260162601626, 0.0975609756097561, 0.0975609756097561, 0.09620596205962059, 0.0948509485094851, 0.09349593495934959, 0.09078590785907859, 0.08943089430894309, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08401084010840108, 0.08265582655826559, 0.08265582655826559, 0.08130081300813008, 0.07994579945799458, 0.07994579945799458, 0.07994579945799458, 0.8157181571815718, 0.07859078590785908, 0.07723577235772358, 0.07723577235772358, 0.9119241192411924, 0.09078590785907859, 0.8238482384823849, 0.15582655826558264, 0.11924119241192412, 0.13550135501355012, 0.24390243902439024, 0.8035230352303523, 0.9186991869918699, 0.924119241192412, 0.8888888888888888, 0.6734417344173442, 0.22357723577235772, 0.22357723577235772, 0.0921409214092141, 0.08130081300813008, 0.07723577235772358, 0.07181571815718157, 0.056910569105691054, 0.051490514905149054, 0.05013550135501355, 0.051490514905149054, 0.052845528455284556, 0.052845528455284556, 0.05420054200542006, 0.05420054200542006, 0.05420054200542006, 0.052845528455284556, 0.05420054200542006, 0.052845528455284556, 0.052845528455284556, 0.052845528455284556, 0.051490514905149054, 0.04607046070460705, 0.044715447154471545, 0.05420054200542006, 0.04336043360433604, 0.8102981029810298, 0.8048780487804879, 0.04336043360433604, 0.04336043360433604, 0.04336043360433604, 0.04607046070460705, 0.04607046070460705, 0.04607046070460705, 0.04607046070460705, 0.04742547425474255, 0.04607046070460705, 0.13821138211382114, 0.052845528455284556, 0.051490514905149054, 0.04878048780487805, 0.04742547425474255, 0.04607046070460705, 0.9471544715447154, 0.8252032520325203, 0.04336043360433604, 0.04200542005420054, 0.04200542005420054, 0.044715447154471545, 0.044715447154471545, 0.044715447154471545, 0.04336043360433604, 0.04742547425474255, 0.04742547425474255, 0.04878048780487805, 0.9186991869918699, 0.9363143631436315, 0.9254742547425474, 0.9173441734417345, 0.051490514905149054, 0.05420054200542006, 0.05420054200542006, 0.05420054200542006, 0.06639566395663957, 0.6544715447154471, 0.9281842818428184, 0.7113821138211383, 0.6395663956639567, 0.07046070460704607, 0.06504065040650407, 0.06097560975609756, 0.06368563685636856, 0.06097560975609756, 0.056910569105691054, 0.05555555555555555, 0.05420054200542006, 0.056910569105691054, 0.05420054200542006, 0.052845528455284556, 0.05013550135501355, 0.05013550135501355, 0.04878048780487805, 0.05013550135501355, 0.05013550135501355, 0.05013550135501355, 0.05013550135501355, 0.05013550135501355, 0.05013550135501355, 0.04878048780487805, 0.05013550135501355, 0.05013550135501355, 0.04607046070460705, 0.04607046070460705, 0.04742547425474255, 0.04742547425474255, 0.04742547425474255, 0.04742547425474255, 0.04742547425474255, 0.9417344173441734, 0.044715447154471545, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.05013550135501355, 0.05013550135501355, 0.05013550135501355, 0.05013550135501355, 0.05013550135501355, 0.051490514905149054, 0.052845528455284556, 0.05420054200542006, 0.05420054200542006, 0.058265582655826556, 0.06097560975609756, 0.06097560975609756, 0.06368563685636856, 0.06504065040650407, 0.06639566395663957, 0.06910569105691057, 0.07181571815718157, 0.07317073170731707, 0.07452574525745258, 0.07994579945799458, 0.1043360433604336, 0.33739837398373984], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ETC_C1_NDUFA4.gap.json b/pfam_gap_rates/ETC_C1_NDUFA4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4acf241ffca9ea6e61b5e8629814e2ee6f002075
--- /dev/null
+++ b/pfam_gap_rates/ETC_C1_NDUFA4.gap.json
@@ -0,0 +1 @@
+{"family": "ETC_C1_NDUFA4", "n_seqs": 513, "length": 102, "gap_rates": [0.43664717348927873, 0.06432748538011696, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.05847953216374269, 0.050682261208576995, 0.04873294346978557, 0.04873294346978557, 0.04678362573099415, 0.042884990253411304, 0.029239766081871343, 0.02729044834307992, 0.02729044834307992, 0.02729044834307992, 0.05458089668615984, 0.029239766081871343, 0.03313840155945419, 0.029239766081871343, 0.025341130604288498, 0.025341130604288498, 0.025341130604288498, 0.025341130604288498, 0.023391812865497075, 0.023391812865497075, 0.021442495126705652, 0.021442495126705652, 0.01949317738791423, 0.01949317738791423, 0.017543859649122806, 0.31968810916179335, 0.7309941520467836, 0.723196881091618, 0.015594541910331383, 0.015594541910331383, 0.01364522417153996, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.005847953216374269, 0.005847953216374269, 0.007797270955165692, 0.011695906432748537, 0.007797270955165692, 0.005847953216374269, 0.001949317738791423, 0.005847953216374269, 0.005847953216374269, 0.007797270955165692, 0.007797270955165692, 0.007797270955165692, 0.847953216374269, 0.9200779727095516, 0.8401559454191033, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.007797270955165692, 0.007797270955165692, 0.007797270955165692, 0.009746588693957114, 0.01364522417153996, 0.01364522417153996, 0.017543859649122806, 0.01949317738791423, 0.025341130604288498, 0.04483430799220273, 0.04873294346978557, 0.9142300194931774, 0.8732943469785575, 0.04873294346978557, 0.050682261208576995, 0.056530214424951264, 0.05847953216374269, 0.05847953216374269, 0.06042884990253411, 0.06042884990253411, 0.06237816764132553, 0.06432748538011696, 0.06432748538011696, 0.07017543859649122, 0.07407407407407407, 0.09551656920077972, 0.15984405458089668, 0.18323586744639375, 0.33723196881091616, 0.5341130604288499], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ETX_MTX2.gap.json b/pfam_gap_rates/ETX_MTX2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2ea8d59b32d25f65b300ad5bac2622817be7e45
--- /dev/null
+++ b/pfam_gap_rates/ETX_MTX2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EVE.gap.json b/pfam_gap_rates/EVE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..649176e93aeb61211efeff31b578efc610e55f30
--- /dev/null
+++ b/pfam_gap_rates/EVE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ebp2.gap.json b/pfam_gap_rates/Ebp2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d74715a1d223e30082718c123b6d4515dcd879cd
--- /dev/null
+++ b/pfam_gap_rates/Ebp2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EcKinase.gap.json b/pfam_gap_rates/EcKinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..448bb6a38cbc2282f37e8ccd8b3de36578627a35
--- /dev/null
+++ b/pfam_gap_rates/EcKinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EcoRI_methylase.gap.json b/pfam_gap_rates/EcoRI_methylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85edf3b05a382df4c48ede33425e51bba46d804a
--- /dev/null
+++ b/pfam_gap_rates/EcoRI_methylase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EcsB.gap.json b/pfam_gap_rates/EcsB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..365dc460149bc722b19b6be13ddc08425e85369d
--- /dev/null
+++ b/pfam_gap_rates/EcsB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Enolase_N.gap.json b/pfam_gap_rates/Enolase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b36d2d753bf8d69534aca6bb271dcde1f0f857a4
--- /dev/null
+++ b/pfam_gap_rates/Enolase_N.gap.json
@@ -0,0 +1 @@
+{"family": "Enolase_N", "n_seqs": 2810, "length": 133, "gap_rates": [0.07508896797153025, 0.05551601423487545, 0.04306049822064057, 0.04092526690391459, 0.039501779359430604, 0.03879003558718861, 0.03879003558718861, 0.03807829181494662, 0.037366548042704624, 0.037366548042704624, 0.037366548042704624, 0.03665480427046263, 0.036298932384341634, 0.036298932384341634, 0.036298932384341634, 0.03594306049822064, 0.03558718861209965, 0.03558718861209965, 0.034875444839857654, 0.03451957295373666, 0.03451957295373666, 0.034875444839857654, 0.034875444839857654, 0.034875444839857654, 0.034875444839857654, 0.05195729537366548, 0.043772241992882564, 0.17651245551601424, 0.055871886120996445, 0.04804270462633452, 0.03131672597864769, 0.03131672597864769, 0.03096085409252669, 0.0298932384341637, 0.029537366548042704, 0.030249110320284697, 0.030249110320284697, 0.029537366548042704, 0.029537366548042704, 0.0298932384341637, 0.029181494661921707, 0.028113879003558717, 0.027402135231316727, 0.027758007117437724, 0.028113879003558717, 0.028469750889679714, 0.03914590747330961, 0.036298932384341634, 0.03772241992882562, 0.038434163701067614, 0.04661921708185053, 0.2405693950177936, 0.06654804270462633, 0.06512455516014234, 0.06192170818505338, 0.059430604982206404, 0.053736654804270464, 0.050533807829181494, 0.04911032028469751, 0.040569395017793594, 0.0398576512455516, 0.03558718861209965, 0.028113879003558717, 0.028113879003558717, 0.028113879003558717, 0.027402135231316727, 0.028469750889679714, 0.028469750889679714, 0.02882562277580071, 0.0298932384341637, 0.030249110320284697, 0.027402135231316727, 0.02704626334519573, 0.026690391459074734, 0.02704626334519573, 0.025622775800711744, 0.02597864768683274, 0.8879003558718861, 0.8850533807829182, 0.025266903914590747, 0.02597864768683274, 0.025266903914590747, 0.03558718861209965, 0.026334519572953737, 0.024555160142348754, 0.025266903914590747, 0.02597864768683274, 0.026334519572953737, 0.026334519572953737, 0.026334519572953737, 0.026690391459074734, 0.02597864768683274, 0.0199288256227758, 0.02099644128113879, 0.02206405693950178, 0.025622775800711744, 0.026690391459074734, 0.030249110320284697, 0.030604982206405694, 0.030249110320284697, 0.029181494661921707, 0.028113879003558717, 0.026334519572953737, 0.02704626334519573, 0.02597864768683274, 0.026690391459074734, 0.026690391459074734, 0.026690391459074734, 0.02704626334519573, 0.027402135231316727, 0.027402135231316727, 0.027758007117437724, 0.02882562277580071, 0.029537366548042704, 0.029537366548042704, 0.029181494661921707, 0.029181494661921707, 0.02882562277580071, 0.02882562277580071, 0.029181494661921707, 0.029537366548042704, 0.029537366548042704, 0.0298932384341637, 0.030604982206405694, 0.03096085409252669, 0.03096085409252669, 0.03096085409252669, 0.031672597864768684, 0.031672597864768684, 0.03238434163701068, 0.03416370106761566, 0.0402135231316726, 0.11565836298932385], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EntA_Immun.gap.json b/pfam_gap_rates/EntA_Immun.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cee9fdd051c12f1b9074f1771480df6640457cfc
--- /dev/null
+++ b/pfam_gap_rates/EntA_Immun.gap.json
@@ -0,0 +1 @@
+{"family": "EntA_Immun", "n_seqs": 146, "length": 80, "gap_rates": [0.863013698630137, 0.4589041095890411, 0.2876712328767123, 0.22602739726027396, 0.15753424657534246, 0.1232876712328767, 0.1232876712328767, 0.10273972602739725, 0.0958904109589041, 0.0821917808219178, 0.07534246575342465, 0.0821917808219178, 0.0684931506849315, 0.06164383561643835, 0.07534246575342465, 0.0684931506849315, 0.8767123287671232, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.3972602739726027, 0.8424657534246576, 0.7945205479452054, 0.3698630136986301, 0.02054794520547945, 0.0136986301369863, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.06164383561643835, 0.00684931506849315, 0.00684931506849315, 0.0, 0.00684931506849315, 0.0136986301369863, 0.0136986301369863, 0.00684931506849315, 0.00684931506849315, 0.8013698630136986, 0.0136986301369863, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.0273972602739726, 0.3424657534246575, 0.3904109589041096, 0.9383561643835616, 0.9452054794520548, 0.9383561643835616, 0.0410958904109589, 0.0547945205479452, 0.0547945205479452, 0.0684931506849315, 0.07534246575342465, 0.08904109589041095, 0.0958904109589041, 0.10273972602739725, 0.10273972602739725, 0.11643835616438356, 0.1232876712328767, 0.14383561643835616, 0.21232876712328766, 0.3356164383561644, 0.4794520547945205], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Epimerase.gap.json b/pfam_gap_rates/Epimerase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a38cf7969a392fff998b40e11b9ff7fbab6f3a6a
--- /dev/null
+++ b/pfam_gap_rates/Epimerase.gap.json
@@ -0,0 +1 @@
+{"family": "Epimerase", "n_seqs": 5000, "length": 304, "gap_rates": [0.2782, 0.1146, 0.0926, 0.0884, 0.0834, 0.075, 0.0862, 0.0704, 0.0688, 0.0678, 0.0674, 0.067, 0.0668, 0.066, 0.0658, 0.0646, 0.0632, 0.062, 0.0618, 0.0634, 0.074, 0.0748, 0.9224, 0.838, 0.0762, 0.0692, 0.8984, 0.0664, 0.0648, 0.0626, 0.062, 0.0618, 0.0626, 0.0634, 0.2478, 0.2274, 0.2044, 0.1832, 0.189, 0.2276, 0.2326, 0.2624, 0.2874, 0.2982, 0.3464, 0.2866, 0.6016, 0.6706, 0.733, 0.816, 0.8768, 0.9396, 0.9442, 0.9182, 0.8462, 0.7662, 0.7052, 0.6444, 0.571, 0.197, 0.1818, 0.1562, 0.0852, 0.082, 0.0758, 0.0714, 0.0642, 0.0726, 0.0792, 0.0752, 0.1036, 0.0782, 0.0708, 0.0684, 0.076, 0.0768, 0.0714, 0.5034, 0.5296, 0.915, 0.0692, 0.0572, 0.056, 0.055, 0.0548, 0.0536, 0.0552, 0.0606, 0.162, 0.1526, 0.7128, 0.1776, 0.1476, 0.1206, 0.111, 0.1088, 0.1138, 0.2294, 0.2054, 0.151, 0.1262, 0.1686, 0.1396, 0.1194, 0.1368, 0.12, 0.1176, 0.1174, 0.107, 0.0948, 0.0902, 0.0852, 0.0804, 0.0788, 0.0748, 0.073, 0.0716, 0.0728, 0.0708, 0.0704, 0.0708, 0.0762, 0.074, 0.939, 0.848, 0.071, 0.0684, 0.1872, 0.9408, 0.8736, 0.068, 0.061, 0.0584, 0.058, 0.0588, 0.0588, 0.0596, 0.9216, 0.0888, 0.091, 0.0868, 0.0782, 0.0786, 0.9062, 0.9106, 0.916, 0.924, 0.9336, 0.9478, 0.9388, 0.9306, 0.9206, 0.9134, 0.9084, 0.9046, 0.0856, 0.12, 0.1224, 0.1214, 0.9226, 0.8542, 0.3134, 0.9442, 0.2956, 0.8324, 0.912, 0.9484, 0.8818, 0.7096, 0.1702, 0.1366, 0.1178, 0.1156, 0.1282, 0.5962, 0.5624, 0.5282, 0.1726, 0.1458, 0.8688, 0.9424, 0.6452, 0.1282, 0.1038, 0.0906, 0.0846, 0.0818, 0.0842, 0.0844, 0.1174, 0.092, 0.091, 0.0838, 0.081, 0.076, 0.075, 0.0748, 0.0744, 0.0758, 0.076, 0.0828, 0.107, 0.1416, 0.1292, 0.1234, 0.1116, 0.8786, 0.172, 0.1168, 0.0966, 0.088, 0.0812, 0.0806, 0.0806, 0.0808, 0.0816, 0.0896, 0.0962, 0.099, 0.1026, 0.1058, 0.1068, 0.1088, 0.8576, 0.9048, 0.9416, 0.9198, 0.887, 0.694, 0.5498, 0.4936, 0.4444, 0.3186, 0.2698, 0.8806, 0.2048, 0.1582, 0.154, 0.1554, 0.1688, 0.1682, 0.2302, 0.1796, 0.1668, 0.164, 0.1776, 0.1784, 0.184, 0.1906, 0.185, 0.2032, 0.92, 0.9366, 0.854, 0.7614, 0.3074, 0.2204, 0.2076, 0.1916, 0.2108, 0.2208, 0.89, 0.9028, 0.9054, 0.9042, 0.8926, 0.8774, 0.2592, 0.2314, 0.2098, 0.2, 0.2234, 0.2112, 0.2012, 0.1812, 0.177, 0.177, 0.177, 0.1776, 0.1778, 0.1792, 0.18, 0.1808, 0.1814, 0.1818, 0.1846, 0.188, 0.1896, 0.1966, 0.205, 0.2202, 0.5034, 0.5214, 0.5382, 0.5796, 0.5656, 0.5586, 0.5232, 0.5188, 0.5194, 0.5276, 0.5474, 0.5876, 0.677], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Epimerase_2.gap.json b/pfam_gap_rates/Epimerase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7a575e82517e65bb51603ea4fa604e9806cdf66
--- /dev/null
+++ b/pfam_gap_rates/Epimerase_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EpoR_lig-bind.gap.json b/pfam_gap_rates/EpoR_lig-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2839bce3f6e035c847ed1345fda4a04d26ef891
--- /dev/null
+++ b/pfam_gap_rates/EpoR_lig-bind.gap.json
@@ -0,0 +1 @@
+{"family": "EpoR_lig-bind", "n_seqs": 100, "length": 114, "gap_rates": [0.89, 0.79, 0.76, 0.72, 0.51, 0.29, 0.2, 0.16, 0.12, 0.1, 0.09, 0.08, 0.07, 0.07, 0.07, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.87, 0.86, 0.17, 0.95, 0.95, 0.1, 0.09, 0.16, 0.89, 0.81, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.06, 0.05, 0.06, 0.89, 0.95, 0.38, 0.05, 0.05, 0.04, 0.04, 0.04, 0.04, 0.03, 0.04, 0.05, 0.04, 0.05, 0.07, 0.04, 0.04, 0.03, 0.04, 0.67, 0.65, 0.66, 0.65, 0.62, 0.03, 0.03, 0.04, 0.04, 0.24, 0.09, 0.89, 0.05, 0.05, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.19, 0.16, 0.11, 0.13, 0.16, 0.16, 0.15, 0.18, 0.18, 0.2, 0.2, 0.2, 0.23, 0.25, 0.26, 0.31, 0.54], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Es2.gap.json b/pfam_gap_rates/Es2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ae43154b3913207dc8d81f28e570150448e8209
--- /dev/null
+++ b/pfam_gap_rates/Es2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EutH.gap.json b/pfam_gap_rates/EutH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5575c77a934edaa12fb9ec69cf2f752d1b1574d
--- /dev/null
+++ b/pfam_gap_rates/EutH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EutQ.gap.json b/pfam_gap_rates/EutQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd786c8218414938a74479a6407b66fa3ce90421
--- /dev/null
+++ b/pfam_gap_rates/EutQ.gap.json
@@ -0,0 +1 @@
+{"family": "EutQ", "n_seqs": 167, "length": 156, "gap_rates": [0.8622754491017964, 0.7544910179640718, 0.7365269461077845, 0.7125748502994012, 0.6946107784431138, 0.6766467065868264, 0.6646706586826348, 0.6646706586826348, 0.6586826347305389, 0.6586826347305389, 0.6586826347305389, 0.6586826347305389, 0.6526946107784432, 0.6526946107784432, 0.6526946107784432, 0.6526946107784432, 0.6586826347305389, 0.6526946107784432, 0.6526946107784432, 0.7065868263473054, 0.7365269461077845, 0.7245508982035929, 0.8263473053892215, 0.7964071856287425, 0.7784431137724551, 0.7485029940119761, 0.7065868263473054, 0.6946107784431138, 0.6766467065868264, 0.6526946107784432, 0.6227544910179641, 0.6167664670658682, 0.592814371257485, 0.6167664670658682, 0.5988023952095808, 0.5868263473053892, 0.562874251497006, 0.562874251497006, 0.5748502994011976, 0.5808383233532934, 0.5688622754491018, 0.5508982035928144, 0.5508982035928144, 0.6227544910179641, 0.6107784431137725, 0.592814371257485, 0.5269461077844312, 0.5329341317365269, 0.5389221556886228, 0.5449101796407185, 0.562874251497006, 0.5508982035928144, 0.562874251497006, 0.5508982035928144, 0.5508982035928144, 0.562874251497006, 0.5209580838323353, 0.5209580838323353, 0.49700598802395207, 0.46706586826347307, 0.4431137724550898, 0.41317365269461076, 0.41317365269461076, 0.39520958083832336, 0.39520958083832336, 0.39520958083832336, 0.31736526946107785, 0.2994011976047904, 0.281437125748503, 0.2754491017964072, 0.25149700598802394, 0.25748502994011974, 0.23353293413173654, 0.2155688622754491, 0.2155688622754491, 0.11377245508982035, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08383233532934131, 0.07784431137724551, 0.07784431137724551, 0.8323353293413174, 0.07784431137724551, 0.8982035928143712, 0.07784431137724551, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.04790419161676647, 0.029940119760479042, 0.017964071856287425, 0.017964071856287425, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.011976047904191617, 0.005988023952095809, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9341317365269461, 0.0, 0.0, 0.7784431137724551, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005988023952095809, 0.0, 0.0, 0.0, 0.0, 0.023952095808383235, 0.029940119760479042, 0.04790419161676647, 0.08982035928143713, 0.11377245508982035, 0.17964071856287425, 0.20359281437125748, 0.2215568862275449, 0.23952095808383234, 0.281437125748503, 0.3592814371257485, 0.41317365269461076, 0.437125748502994, 0.46706586826347307, 0.5209580838323353, 0.5269461077844312, 0.5449101796407185, 0.8143712574850299], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FAD_oxidored.gap.json b/pfam_gap_rates/FAD_oxidored.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82c842df7ed45bfecca47d79429c52fe305ebae4
--- /dev/null
+++ b/pfam_gap_rates/FAD_oxidored.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FAM221.gap.json b/pfam_gap_rates/FAM221.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c1466087b272ec9aa72b95878fa8f5957216b77
--- /dev/null
+++ b/pfam_gap_rates/FAM221.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FAM91_C.gap.json b/pfam_gap_rates/FAM91_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b709c56b6d39730e72af5ef5c8071055ce8d776
--- /dev/null
+++ b/pfam_gap_rates/FAM91_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FA_synthesis.gap.json b/pfam_gap_rates/FA_synthesis.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..163601efd0688cea1df9ab98a5074c6d871176ef
--- /dev/null
+++ b/pfam_gap_rates/FA_synthesis.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FGase.gap.json b/pfam_gap_rates/FGase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1974947af0ca47f527c276e16ae036b0c5168fbb
--- /dev/null
+++ b/pfam_gap_rates/FGase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FHA.gap.json b/pfam_gap_rates/FHA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27df3214ce3589458c961dc69d85d9a124343305
--- /dev/null
+++ b/pfam_gap_rates/FHA.gap.json
@@ -0,0 +1 @@
+{"family": "FHA", "n_seqs": 5000, "length": 99, "gap_rates": [0.6736, 0.244, 0.1258, 0.1094, 0.1084, 0.1052, 0.816, 0.894, 0.9178, 0.9378, 0.901, 0.8366, 0.667, 0.1284, 0.0922, 0.0788, 0.064, 0.0574, 0.0562, 0.0474, 0.0304, 0.8338, 0.8978, 0.9458, 0.935, 0.864, 0.7828, 0.0244, 0.0196, 0.016, 0.011, 0.01, 0.0092, 0.0076, 0.0076, 0.0074, 0.007, 0.007, 0.0072, 0.0104, 0.0114, 0.011, 0.0074, 0.8036, 0.876, 0.9076, 0.9222, 0.9334, 0.9442, 0.926, 0.9168, 0.8938, 0.8402, 0.7912, 0.6332, 0.463, 0.011, 0.004, 0.003, 0.0026, 0.0026, 0.0024, 0.1278, 0.0884, 0.0838, 0.0042, 0.002, 0.002, 0.0024, 0.0052, 0.0068, 0.0516, 0.0596, 0.9358, 0.926, 0.0632, 0.0432, 0.0448, 0.0474, 0.0532, 0.8958, 0.9072, 0.9034, 0.8734, 0.4558, 0.4114, 0.2258, 0.0726, 0.0766, 0.079, 0.0842, 0.0892, 0.0934, 0.099, 0.1036, 0.1098, 0.1304, 0.1664, 0.3584], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FOXP-CC.gap.json b/pfam_gap_rates/FOXP-CC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cec739c11f9c9c669c83344a535bf68476f1664
--- /dev/null
+++ b/pfam_gap_rates/FOXP-CC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FPN1.gap.json b/pfam_gap_rates/FPN1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..470e969aa4e914b2ad37c20ccb3c8bc88bb2797f
--- /dev/null
+++ b/pfam_gap_rates/FPN1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FRB_dom.gap.json b/pfam_gap_rates/FRB_dom.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1c7c839462336b32d5a39a44ffb6eebb1726319
--- /dev/null
+++ b/pfam_gap_rates/FRB_dom.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FSA_C.gap.json b/pfam_gap_rates/FSA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3766f9bfa7f1140eb5979dcb33dc7fb28a15cca
--- /dev/null
+++ b/pfam_gap_rates/FSA_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FTCD_N.gap.json b/pfam_gap_rates/FTCD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d2a1f62fe1f76ad2bfe51f1bda55b1e22843b88
--- /dev/null
+++ b/pfam_gap_rates/FTCD_N.gap.json
@@ -0,0 +1 @@
+{"family": "FTCD_N", "n_seqs": 414, "length": 207, "gap_rates": [0.2753623188405797, 0.14251207729468598, 0.09903381642512077, 0.08454106280193237, 0.07971014492753623, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.08454106280193237, 0.0748792270531401, 0.07246376811594203, 0.06763285024154589, 0.06038647342995169, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.05555555555555555, 0.06038647342995169, 0.06521739130434782, 0.06521739130434782, 0.07971014492753623, 0.9323671497584541, 0.11835748792270531, 0.0748792270531401, 0.07246376811594203, 0.07004830917874397, 0.05555555555555555, 0.050724637681159424, 0.050724637681159424, 0.04830917874396135, 0.04589371980676329, 0.04589371980676329, 0.04589371980676329, 0.04589371980676329, 0.04589371980676329, 0.04589371980676329, 0.04589371980676329, 0.04589371980676329, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.8961352657004831, 0.9009661835748792, 0.9057971014492754, 0.9371980676328503, 0.9202898550724637, 0.9033816425120773, 0.8961352657004831, 0.8913043478260869, 0.050724637681159424, 0.10628019323671498, 0.12077294685990338, 0.13285024154589373, 0.12560386473429952, 0.057971014492753624, 0.9082125603864735, 0.9202898550724637, 0.9444444444444444, 0.9178743961352657, 0.8961352657004831, 0.057971014492753624, 0.057971014492753624, 0.050724637681159424, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.04589371980676329, 0.043478260869565216, 0.04589371980676329, 0.04589371980676329, 0.04589371980676329, 0.043478260869565216, 0.043478260869565216, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.036231884057971016, 0.03864734299516908, 0.03864734299516908, 0.03864734299516908, 0.03864734299516908, 0.036231884057971016, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.04106280193236715, 0.033816425120772944, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.050724637681159424, 0.06763285024154589, 0.04106280193236715, 0.036231884057971016, 0.043478260869565216, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04106280193236715, 0.04589371980676329, 0.04830917874396135, 0.050724637681159424, 0.2608695652173913, 0.22946859903381642, 0.0821256038647343, 0.07004830917874397, 0.06280193236714976, 0.06038647342995169, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.04589371980676329, 0.7995169082125604, 0.7971014492753623, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.06038647342995169, 0.07729468599033816, 0.10144927536231885, 0.13285024154589373, 0.11835748792270531, 0.8695652173913043, 0.17391304347826086, 0.2028985507246377, 0.23671497584541062, 0.15942028985507245, 0.06521739130434782, 0.050724637681159424, 0.8599033816425121, 0.8599033816425121, 0.8599033816425121, 0.8599033816425121, 0.8719806763285024, 0.8816425120772947, 0.8719806763285024, 0.8599033816425121, 0.8599033816425121, 0.8599033816425121, 0.8599033816425121, 0.050724637681159424, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.0893719806763285, 0.06280193236714976, 0.06038647342995169, 0.057971014492753624, 0.0893719806763285, 0.9371980676328503, 0.9396135265700483, 0.9323671497584541, 0.06038647342995169, 0.07246376811594203, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.06038647342995169, 0.06038647342995169, 0.06038647342995169, 0.06763285024154589, 0.1932367149758454], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FYDLN_acid.gap.json b/pfam_gap_rates/FYDLN_acid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f55871e11f17d74aa9d1ceb9476682704857190c
--- /dev/null
+++ b/pfam_gap_rates/FYDLN_acid.gap.json
@@ -0,0 +1 @@
+{"family": "FYDLN_acid", "n_seqs": 197, "length": 139, "gap_rates": [0.1218274111675127, 0.09137055837563451, 0.06598984771573604, 0.06091370558375635, 0.050761421319796954, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.04060913705583756, 0.025380710659898477, 0.015228426395939087, 0.02030456852791878, 0.01015228426395939, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.8578680203045685, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9238578680203046, 0.949238578680203, 0.883248730964467, 0.28426395939086296, 0.1065989847715736, 0.08629441624365482, 0.03553299492385787, 0.025380710659898477, 0.015228426395939087, 0.015228426395939087, 0.030456852791878174, 0.030456852791878174, 0.02030456852791878, 0.04060913705583756, 0.06598984771573604, 0.06598984771573604, 0.8934010152284264, 0.25888324873096447, 0.19289340101522842, 0.14720812182741116, 0.09137055837563451, 0.15736040609137056, 0.12690355329949238, 0.06598984771573604, 0.07106598984771574, 0.04060913705583756, 0.025380710659898477, 0.025380710659898477, 0.030456852791878174, 0.025380710659898477, 0.025380710659898477, 0.06598984771573604, 0.03553299492385787, 0.030456852791878174, 0.025380710659898477, 0.05583756345177665, 0.08629441624365482, 0.07106598984771574, 0.04060913705583756, 0.030456852791878174, 0.03553299492385787, 0.03553299492385787, 0.04568527918781726, 0.05583756345177665, 0.09137055837563451, 0.19796954314720813, 0.25888324873096447, 0.5989847715736041, 0.6446700507614214, 0.7360406091370558, 0.8274111675126904, 0.8781725888324873, 0.934010152284264, 0.949238578680203, 0.9441624365482234, 0.9187817258883249, 0.8527918781725888, 0.7868020304568528, 0.700507614213198, 0.6142131979695431, 0.5532994923857868, 0.09644670050761421, 0.12690355329949238, 0.1116751269035533, 0.10152284263959391, 0.8071065989847716, 0.8730964467005076, 0.9086294416243654, 0.9390862944162437, 0.949238578680203, 0.9441624365482234, 0.9137055837563451, 0.8934010152284264, 0.8223350253807107, 0.7918781725888325, 0.20304568527918782, 0.15736040609137056, 0.1116751269035533, 0.07614213197969544, 0.10152284263959391, 0.09137055837563451, 0.1065989847715736, 0.08629441624365482, 0.09137055837563451, 0.09644670050761421, 0.9187817258883249, 0.949238578680203, 0.934010152284264, 0.8730964467005076, 0.1319796954314721, 0.17258883248730963, 0.19796954314720813, 0.24873096446700507, 0.27918781725888325, 0.29949238578680204, 0.3756345177664975, 0.4873096446700508], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fascin.gap.json b/pfam_gap_rates/Fascin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34f5c1095db8e19f95c9efb3c249312f839e6c12
--- /dev/null
+++ b/pfam_gap_rates/Fascin.gap.json
@@ -0,0 +1 @@
+{"family": "Fascin", "n_seqs": 429, "length": 129, "gap_rates": [0.9184149184149184, 0.46153846153846156, 0.3543123543123543, 0.32867132867132864, 0.317016317016317, 0.3123543123543124, 0.31002331002331, 0.30536130536130535, 0.29603729603729606, 0.2913752913752914, 0.2540792540792541, 0.24242424242424243, 0.2191142191142191, 0.20745920745920746, 0.20279720279720279, 0.19813519813519814, 0.1888111888111888, 0.2517482517482518, 0.3986013986013986, 0.3146853146853147, 0.3076923076923077, 0.16783216783216784, 0.1561771561771562, 0.14219114219114218, 0.8088578088578089, 0.8135198135198135, 0.8228438228438228, 0.8321678321678322, 0.8554778554778555, 0.8298368298368298, 0.8205128205128205, 0.8111888111888111, 0.8041958041958042, 0.13053613053613053, 0.12354312354312354, 0.11655011655011654, 0.11655011655011654, 0.11655011655011654, 0.11188811188811189, 0.17715617715617715, 0.10955710955710955, 0.10256410256410256, 0.10256410256410256, 0.8438228438228438, 0.8531468531468531, 0.7226107226107226, 0.07226107226107226, 0.06293706293706294, 0.055944055944055944, 0.40792540792540793, 0.3473193473193473, 0.018648018648018648, 0.016317016317016316, 0.02097902097902098, 0.011655011655011656, 0.011655011655011656, 0.011655011655011656, 0.011655011655011656, 0.011655011655011656, 0.011655011655011656, 0.011655011655011656, 0.2564102564102564, 0.23776223776223776, 0.013986013986013986, 0.011655011655011656, 0.018648018648018648, 0.04428904428904429, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.018648018648018648, 0.02097902097902098, 0.02097902097902098, 0.3822843822843823, 0.2680652680652681, 0.23543123543123542, 0.023310023310023312, 0.023310023310023312, 0.02564102564102564, 0.02564102564102564, 0.027972027972027972, 0.027972027972027972, 0.02564102564102564, 0.02564102564102564, 0.023310023310023312, 0.018648018648018648, 0.6806526806526807, 0.9114219114219114, 0.8811188811188811, 0.5664335664335665, 0.02097902097902098, 0.023310023310023312, 0.02564102564102564, 0.023310023310023312, 0.027972027972027972, 0.027972027972027972, 0.12354312354312354, 0.1282051282051282, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.7832167832167832, 0.2564102564102564, 0.03496503496503497, 0.03496503496503497, 0.037296037296037296, 0.04428904428904429, 0.039627039627039624, 0.046620046620046623, 0.05128205128205128, 0.055944055944055944, 0.9044289044289044, 0.06293706293706294, 0.08857808857808858, 0.1048951048951049, 0.11188811188811189, 0.12354312354312354, 0.13286713286713286, 0.14685314685314685, 0.1655011655011655, 0.1888111888111888, 0.19347319347319347, 0.2097902097902098, 0.28205128205128205, 0.5407925407925408], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FecCD.gap.json b/pfam_gap_rates/FecCD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4539748962d7de72ffb23003f32e7348109bc21d
--- /dev/null
+++ b/pfam_gap_rates/FecCD.gap.json
@@ -0,0 +1 @@
+{"family": "FecCD", "n_seqs": 5000, "length": 333, "gap_rates": [0.7468, 0.3396, 0.2176, 0.1738, 0.152, 0.1444, 0.1384, 0.1334, 0.131, 0.1292, 0.126, 0.1232, 0.1224, 0.1208, 0.1216, 0.1262, 0.123, 0.119, 0.1184, 0.1186, 0.1156, 0.1138, 0.1138, 0.1132, 0.1274, 0.1892, 0.1918, 0.2096, 0.2212, 0.2114, 0.6808, 0.7686, 0.7972, 0.8704, 0.9468, 0.9076, 0.8156, 0.7788, 0.754, 0.557, 0.1158, 0.1062, 0.0926, 0.0806, 0.0854, 0.0686, 0.064, 0.0494, 0.0466, 0.0452, 0.0424, 0.0408, 0.0404, 0.0402, 0.04, 0.0396, 0.0388, 0.0374, 0.0374, 0.0372, 0.0372, 0.0368, 0.0368, 0.0368, 0.0364, 0.0364, 0.0362, 0.036, 0.036, 0.0358, 0.0358, 0.0358, 0.0344, 0.0348, 0.0348, 0.0348, 0.0346, 0.0346, 0.0348, 0.0348, 0.0352, 0.0352, 0.0356, 0.0354, 0.0356, 0.0356, 0.0356, 0.0356, 0.0358, 0.036, 0.0356, 0.0356, 0.0354, 0.0352, 0.0352, 0.0352, 0.0354, 0.0352, 0.0356, 0.0356, 0.0354, 0.0356, 0.0364, 0.1466, 0.6882, 0.8204, 0.886, 0.9476, 0.9122, 0.8598, 0.7668, 0.6418, 0.5566, 0.1846, 0.1044, 0.0576, 0.044, 0.0398, 0.0392, 0.0366, 0.037, 0.0364, 0.0354, 0.035, 0.035, 0.035, 0.0348, 0.0344, 0.0354, 0.0354, 0.0352, 0.0352, 0.0348, 0.0346, 0.0346, 0.0344, 0.0348, 0.0382, 0.0362, 0.0396, 0.7786, 0.4396, 0.1466, 0.0536, 0.0408, 0.0368, 0.0366, 0.036, 0.035, 0.035, 0.0344, 0.0338, 0.0336, 0.0334, 0.0328, 0.033, 0.033, 0.0332, 0.0334, 0.0336, 0.0338, 0.0338, 0.0338, 0.0336, 0.0332, 0.0334, 0.0334, 0.0338, 0.0334, 0.0334, 0.0334, 0.0332, 0.0356, 0.3606, 0.8466, 0.125, 0.0776, 0.048, 0.0368, 0.0366, 0.0364, 0.036, 0.035, 0.0338, 0.0336, 0.0336, 0.0332, 0.033, 0.0332, 0.0334, 0.0332, 0.0632, 0.0366, 0.0364, 0.0388, 0.0382, 0.0368, 0.0378, 0.0396, 0.0556, 0.0392, 0.0338, 0.0344, 0.034, 0.0346, 0.034, 0.0338, 0.034, 0.0336, 0.0344, 0.0342, 0.0344, 0.0344, 0.0346, 0.0344, 0.0346, 0.0348, 0.035, 0.035, 0.034, 0.0342, 0.0344, 0.0342, 0.0344, 0.034, 0.0342, 0.0344, 0.0346, 0.0346, 0.0344, 0.0342, 0.0344, 0.0336, 0.0336, 0.0332, 0.0344, 0.0342, 0.0338, 0.034, 0.034, 0.034, 0.0338, 0.0342, 0.0338, 0.0344, 0.0342, 0.0342, 0.0336, 0.0338, 0.0336, 0.0338, 0.034, 0.034, 0.034, 0.034, 0.0338, 0.0336, 0.0336, 0.0342, 0.0344, 0.0342, 0.0338, 0.0334, 0.0338, 0.0342, 0.0336, 0.0336, 0.033, 0.0326, 0.0328, 0.0324, 0.0322, 0.0318, 0.0316, 0.0436, 0.0316, 0.0326, 0.0322, 0.8728, 0.0886, 0.0394, 0.0382, 0.0346, 0.0342, 0.033, 0.0326, 0.0336, 0.0394, 0.0326, 0.0328, 0.0326, 0.0322, 0.0322, 0.0328, 0.0328, 0.0332, 0.0332, 0.033, 0.0328, 0.033, 0.033, 0.033, 0.0332, 0.0334, 0.0334, 0.0338, 0.034, 0.0606, 0.155, 0.0734, 0.0424, 0.04, 0.0494, 0.0352, 0.035, 0.0348, 0.0346, 0.0348, 0.0352, 0.0352, 0.0354, 0.0352, 0.0356, 0.0358, 0.0362, 0.037, 0.0372, 0.0374, 0.039, 0.0412, 0.044, 0.1026, 0.29], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer2.gap.json b/pfam_gap_rates/Fer2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8a9df013fe890a9db7009cdd7c3087d45dacddd
--- /dev/null
+++ b/pfam_gap_rates/Fer2.gap.json
@@ -0,0 +1 @@
+{"family": "Fer2", "n_seqs": 5000, "length": 94, "gap_rates": [0.9148, 0.6046, 0.4552, 0.3624, 0.277, 0.2246, 0.216, 0.1418, 0.1056, 0.0876, 0.0898, 0.0848, 0.1472, 0.065, 0.055, 0.035, 0.0336, 0.7514, 0.0254, 0.0228, 0.0216, 0.0206, 0.0204, 0.021, 0.0332, 0.7022, 0.0268, 0.5746, 0.0154, 0.013, 0.0108, 0.0104, 0.0148, 0.0068, 0.003, 0.0008, 0.0006, 0.001, 0.0014, 0.0008, 0.7128, 0.0006, 0.0006, 0.0004, 0.0004, 0.0004, 0.0012, 0.0176, 0.019, 0.0084, 0.1778, 0.1418, 0.163, 0.1898, 0.8014, 0.9082, 0.4066, 0.2432, 0.3864, 0.3122, 0.8266, 0.9018, 0.6778, 0.4134, 0.3696, 0.3444, 0.3228, 0.3168, 0.26, 0.2648, 0.3026, 0.4342, 0.423, 0.4172, 0.4272, 0.411, 0.3386, 0.7892, 0.8028, 0.9254, 0.9466, 0.9384, 0.8232, 0.7992, 0.7864, 0.4452, 0.249, 0.247, 0.2494, 0.265, 0.288, 0.3472, 0.4526, 0.84], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_11.gap.json b/pfam_gap_rates/Fer4_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c89803dd010d7e71cab5e7da312c4622eb8edc11
--- /dev/null
+++ b/pfam_gap_rates/Fer4_11.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_11", "n_seqs": 2478, "length": 102, "gap_rates": [0.7001614205004035, 0.5411622276029056, 0.39023405972558517, 0.29983857949959647, 0.18401937046004843, 0.11016949152542373, 0.08757062146892655, 0.048426150121065374, 0.0480225988700565, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.0480225988700565, 0.05004035512510089, 0.04963680387409201, 0.04721549636803874, 0.04721549636803874, 0.04721549636803874, 0.046811945117029866, 0.046811945117029866, 0.046811945117029866, 0.04721549636803874, 0.047619047619047616, 0.04721549636803874, 0.9382566585956417, 0.048829701372074256, 0.0480225988700565, 0.050443906376109765, 0.04923325262308313, 0.05367231638418079, 0.05649717514124294, 0.5254237288135594, 0.06537530266343826, 0.05125100887812752, 0.047619047619047616, 0.04600484261501211, 0.044794188861985475, 0.044794188861985475, 0.044794188861985475, 0.04439063761097659, 0.04398708635996772, 0.04398708635996772, 0.04398708635996772, 0.05125100887812752, 0.04317998385794996, 0.042776432606941084, 0.0423728813559322, 0.041969330104923326, 0.04116222760290557, 0.04116222760290557, 0.04075867635189669, 0.04035512510088781, 0.03954802259887006, 0.0387409200968523, 0.03753026634382567, 0.03753026634382567, 0.03833736884584342, 0.03753026634382567, 0.041969330104923326, 0.053268765133171914, 0.06577885391444714, 0.07707828894269572, 0.0940274414850686, 0.9483454398708636, 0.9495560936238903, 0.9455205811138014, 0.10653753026634383, 0.11864406779661017, 0.13962873284907182, 0.13034705407586764, 0.1271186440677966, 0.12792574656981437, 0.13034705407586764, 0.12994350282485875, 0.13075060532687652, 0.13075060532687652, 0.16626311541565778, 0.18926553672316385, 0.21670702179176757, 0.22033898305084745, 0.22074253430185634, 0.2841000807102502, 0.24939467312348668, 0.23325262308313155, 0.19572235673930588, 0.16626311541565778, 0.16747376916868442, 0.16626311541565778, 0.16626311541565778, 0.16666666666666666, 0.16707021791767554, 0.16747376916868442, 0.17029862792574657, 0.1751412429378531, 0.18038740920096852, 0.18361581920903955, 0.18563357546408393, 0.19531880548829703, 0.23527037933817596, 0.29782082324455206, 0.4543987086359968, 0.9200968523002422], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_15.gap.json b/pfam_gap_rates/Fer4_15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..97eb3fcb2bdc275ca4f2106475978dc37d3f14b1
--- /dev/null
+++ b/pfam_gap_rates/Fer4_15.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_15", "n_seqs": 561, "length": 84, "gap_rates": [0.26737967914438504, 0.14616755793226383, 0.0748663101604278, 0.0570409982174688, 0.040998217468805706, 0.0213903743315508, 0.0196078431372549, 0.016042780748663103, 0.008912655971479501, 0.008912655971479501, 0.008912655971479501, 0.008912655971479501, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.012477718360071301, 0.9251336898395722, 0.9251336898395722, 0.9251336898395722, 0.9251336898395722, 0.9215686274509803, 0.012477718360071301, 0.017825311942959002, 0.0017825311942959, 0.0017825311942959, 0.0017825311942959, 0.0017825311942959, 0.0, 0.040998217468805706, 0.0053475935828877, 0.9144385026737968, 0.0053475935828877, 0.0017825311942959, 0.0053475935828877, 0.1586452762923351, 0.0338680926916221, 0.017825311942959002, 0.8894830659536542, 0.910873440285205, 0.9429590017825312, 0.9251336898395722, 0.9019607843137255, 0.8877005347593583, 0.26024955436720143, 0.4206773618538324, 0.64349376114082, 0.6541889483065954, 0.6470588235294118, 0.7219251336898396, 0.6862745098039216, 0.38859180035650626, 0.1800356506238859, 0.8163992869875223, 0.8431372549019608, 0.948306595365419, 0.8912655971479501, 0.8377896613190731, 0.8021390374331551, 0.06060606060606061, 0.049910873440285206, 0.016042780748663103, 0.0106951871657754, 0.012477718360071301, 0.023172905525846704, 0.0748663101604278, 0.035650623885918005, 0.0196078431372549, 0.0106951871657754, 0.0142602495543672, 0.0142602495543672, 0.016042780748663103, 0.0142602495543672, 0.0142602495543672, 0.0142602495543672, 0.0142602495543672, 0.016042780748663103, 0.016042780748663103, 0.0213903743315508, 0.0213903743315508, 0.023172905525846704, 0.12477718360071301, 0.39928698752228164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_18.gap.json b/pfam_gap_rates/Fer4_18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..353fa9ba68b018a9015a943521541039f7cb35be
--- /dev/null
+++ b/pfam_gap_rates/Fer4_18.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_18", "n_seqs": 587, "length": 114, "gap_rates": [0.1890971039182283, 0.1141396933560477, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10902896081771721, 0.10732538330494037, 0.10732538330494037, 0.10732538330494037, 0.10732538330494037, 0.10732538330494037, 0.10562180579216354, 0.10562180579216354, 0.10562180579216354, 0.10562180579216354, 0.10562180579216354, 0.10391822827938671, 0.10391822827938671, 0.10391822827938671, 0.10562180579216354, 0.10562180579216354, 0.10902896081771721, 0.11073253833049404, 0.11243611584327087, 0.11243611584327087, 0.11584327086882454, 0.12436115843270869, 0.151618398637138, 0.1839863713798978, 0.23509369676320271, 0.3049403747870528, 0.44122657580919933, 0.6643952299829642, 0.7768313458262351, 0.7921635434412265, 0.7751277683134583, 0.7563884156729132, 0.717206132879046, 0.6729131175468483, 0.5775127768313458, 0.41567291311754684, 0.2282793867120954, 0.12776831345826234, 0.09028960817717206, 0.06984667802385008, 0.04599659284497445, 0.04088586030664395, 0.039182282793867124, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.039182282793867124, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.03747870528109029, 0.039182282793867124, 0.039182282793867124, 0.039182282793867124, 0.039182282793867124, 0.04258943781942078, 0.06132879045996593, 0.06984667802385008, 0.07155025553662692, 0.07325383304940375, 0.07325383304940375, 0.07325383304940375, 0.07325383304940375, 0.07325383304940375, 0.07495741056218058, 0.15332197614991483, 0.08006814310051108, 0.08006814310051108, 0.08347529812606473, 0.08517887563884156, 0.09028960817717206, 0.14991482112436116, 0.2606473594548552, 0.7887563884156729], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FhuF_C.gap.json b/pfam_gap_rates/FhuF_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8236db07da556dcf0050829de881850b4bf6368
--- /dev/null
+++ b/pfam_gap_rates/FhuF_C.gap.json
@@ -0,0 +1 @@
+{"family": "FhuF_C", "n_seqs": 212, "length": 24, "gap_rates": [0.09433962264150944, 0.08018867924528301, 0.018867924528301886, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8632075471698113, 0.02830188679245283, 0.0, 0.0, 0.0, 0.0, 0.9386792452830188, 0.8915094339622641, 0.0, 0.0, 0.0, 0.0, 0.03773584905660377, 0.17452830188679244], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fib_succ_major.gap.json b/pfam_gap_rates/Fib_succ_major.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a8773de7d8c3134b6065d65e0d8de139037706d
--- /dev/null
+++ b/pfam_gap_rates/Fib_succ_major.gap.json
@@ -0,0 +1 @@
+{"family": "Fib_succ_major", "n_seqs": 261, "length": 303, "gap_rates": [0.47509578544061304, 0.40229885057471265, 0.32950191570881227, 0.3065134099616858, 0.1724137931034483, 0.13793103448275862, 0.12260536398467432, 0.11877394636015326, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11494252873563218, 0.11494252873563218, 0.11494252873563218, 0.1111111111111111, 0.3371647509578544, 0.9157088122605364, 0.9195402298850575, 0.9425287356321839, 0.9310344827586207, 0.9195402298850575, 0.9080459770114943, 0.4789272030651341, 0.4444444444444444, 0.39080459770114945, 0.37547892720306514, 0.37547892720306514, 0.37547892720306514, 0.3524904214559387, 0.3831417624521073, 0.41379310344827586, 0.42528735632183906, 0.3946360153256705, 0.7318007662835249, 0.7432950191570882, 0.7816091954022989, 0.8735632183908046, 0.9157088122605364, 0.9348659003831418, 0.896551724137931, 0.8122605363984674, 0.7547892720306514, 0.735632183908046, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Filamin.gap.json b/pfam_gap_rates/Filamin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4a5f918a0af0f7f592c9f1d1f05c1090a7d03b62
--- /dev/null
+++ b/pfam_gap_rates/Filamin.gap.json
@@ -0,0 +1 @@
+{"family": "Filamin", "n_seqs": 4213, "length": 110, "gap_rates": [0.5898409684310467, 0.40375029670068835, 0.30761927367671493, 0.27154046997389036, 0.24471872774744838, 0.21409921671018275, 0.2031806313790648, 0.19344884880132923, 0.24899121765962498, 0.23925943508188938, 0.18585331117968193, 0.17802041300735819, 0.19178732494659387, 0.9420840256349394, 0.17540944694991692, 0.16733918822691668, 0.14526465701400426, 0.8231663897460242, 0.7256112034179919, 0.1291241395680038, 0.12224068359838595, 0.11725611203417992, 0.11369570377403275, 0.10966057441253264, 0.10989793496320911, 0.1025397578922383, 0.10111559458817944, 0.09992879183479705, 0.09826726798006172, 0.09708046522667933, 0.09446949916923807, 0.09446949916923807, 0.09304533586517921, 0.09280797531450273, 0.22264419653453596, 0.10182767624020887, 0.10396392119629717, 0.49489674816045576, 0.5062900545929266, 0.5454545454545454, 0.6185615950629005, 0.7443626869214337, 0.7491098979349632, 0.7135058153334916, 0.4564443389508664, 0.34939473059577497, 0.20982672679800618, 0.07002136244956088, 0.06574887253738429, 0.07215760740564918, 0.8260147163541419, 0.9406598623308806, 0.9311654403038215, 0.794683123664847, 0.089959648706385, 0.06646095418941372, 0.05316876335153098, 0.09352005696653216, 0.11962971754094469, 0.14858770472347496, 0.8658912888677902, 0.873249465938761, 0.8613814384049371, 0.8758604319962022, 0.9444576311417042, 0.9480180394018514, 0.9420840256349394, 0.26370757180156656, 0.1801566579634465, 0.03323047709470686, 0.01851412295276525, 0.016377877996676952, 0.006408734868264894, 0.004984571564206029, 0.004747211013529551, 0.004747211013529551, 0.005696653216235461, 0.011868027533823879, 0.005221932114882507, 0.042250178020413004, 0.0011868027533823878, 0.001661523854735343, 0.0011868027533823878, 0.001661523854735343, 0.002136244956088298, 0.0028483266081177306, 0.0018988844054118206, 0.002136244956088298, 0.0026109660574412533, 0.00688345596961785, 0.004272489912176596, 0.004272489912176596, 0.004984571564206029, 0.005221932114882507, 0.005221932114882507, 0.005696653216235461, 0.006408734868264894, 0.007358177070970804, 0.007832898172323759, 0.013529551388559222, 0.017089959648706386, 0.022786612864941845, 0.03204367434132447, 0.034892000949442205, 0.04272489912176596, 0.048896273439354376, 0.0602895798718253, 0.06574887253738429, 0.09755518632803228, 0.4633277949204842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fip1.gap.json b/pfam_gap_rates/Fip1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52d5177d4ca910cb74509d58902cdfc2d68206c6
--- /dev/null
+++ b/pfam_gap_rates/Fip1.gap.json
@@ -0,0 +1 @@
+{"family": "Fip1", "n_seqs": 359, "length": 45, "gap_rates": [0.4206128133704735, 0.24233983286908078, 0.19498607242339833, 0.17548746518105848, 0.1309192200557103, 0.116991643454039, 0.10584958217270195, 0.9498607242339833, 0.036211699164345405, 0.883008356545961, 0.03064066852367688, 0.025069637883008356, 0.025069637883008356, 0.025069637883008356, 0.022284122562674095, 0.019498607242339833, 0.019498607242339833, 0.03899721448467967, 0.013927576601671309, 0.011142061281337047, 0.011142061281337047, 0.005571030640668524, 0.002785515320334262, 0.002785515320334262, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002785515320334262, 0.002785515320334262, 0.002785515320334262, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.008356545961002786, 0.013927576601671309, 0.016713091922005572, 0.027855153203342618, 0.07520891364902507, 0.08913649025069638, 0.1532033426183844, 0.33147632311977715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flavodoxin_2.gap.json b/pfam_gap_rates/Flavodoxin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..392105b988d0de0798cf7a1eb3312af604f75b14
--- /dev/null
+++ b/pfam_gap_rates/Flavodoxin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Flavodoxin_2", "n_seqs": 2068, "length": 237, "gap_rates": [0.4574468085106383, 0.14410058027079303, 0.0913926499032882, 0.07495164410058026, 0.06914893617021277, 0.06624758220502901, 0.06382978723404255, 0.06286266924564797, 0.0609284332688588, 0.0609284332688588, 0.06141199226305609, 0.06286266924564797, 0.45551257253384914, 0.2577369439071567, 0.8563829787234043, 0.18762088974854932, 0.14216634429400388, 0.15425531914893617, 0.09090909090909091, 0.08752417794970986, 0.07011605415860735, 0.05609284332688588, 0.05415860735009671, 0.054642166344294, 0.05319148936170213, 0.05270793036750483, 0.05125725338491296, 0.04932301740812379, 0.05077369439071567, 0.05367504835589942, 0.0551257253384913, 0.058027079303675046, 0.0609284332688588, 0.5947775628626693, 0.9352030947775629, 0.9482591876208898, 0.6528046421663443, 0.1286266924564797, 0.19100580270793036, 0.05851063829787234, 0.05415860735009671, 0.049806576402321084, 0.0488394584139265, 0.048355899419729204, 0.047388781431334626, 0.04642166344294004, 0.04690522243713733, 0.24274661508704062, 0.6740812379110251, 0.3452611218568665, 0.33268858800773693, 0.32640232108317213, 0.3230174081237911, 0.32350096711798837, 0.32688588007736946, 0.33365570599613154, 0.405705996131528, 0.405705996131528, 0.40135396518375244, 0.4032882011605416, 0.5338491295938105, 0.6392649903288201, 0.655705996131528, 0.7877176015473888, 0.8515473887814313, 0.8795938104448743, 0.9366537717601547, 0.9090909090909091, 0.8737911025145068, 0.8157640232108317, 0.6764990328820116, 0.6445841392649904, 0.6300773694390716, 0.5299806576402321, 0.9356866537717602, 0.6629593810444874, 0.5323984526112185, 0.19390715667311412, 0.1653771760154739, 0.163926499032882, 0.172147001934236, 0.34961315280464217, 0.8191489361702128, 0.9395551257253385, 0.7016441005802708, 0.1165377176015474, 0.6673114119922631, 0.0488394584139265, 0.043036750483559, 0.04110251450676983, 0.03916827852998066, 0.03916827852998066, 0.039651837524177946, 0.045454545454545456, 0.6334622823984526, 0.5933268858800773, 0.04013539651837524, 0.03868471953578337, 0.03529980657640232, 0.03433268858800774, 0.03433268858800774, 0.033849129593810444, 0.033849129593810444, 0.033849129593810444, 0.033849129593810444, 0.033365570599613155, 0.03288201160541586, 0.033365570599613155, 0.033365570599613155, 0.033365570599613155, 0.031431334622823985, 0.031431334622823985, 0.031431334622823985, 0.0304642166344294, 0.029980657640232108, 0.02756286266924565, 0.02756286266924565, 0.02756286266924565, 0.02756286266924565, 0.026595744680851064, 0.02756286266924565, 0.027079303675048357, 0.02804642166344294, 0.029013539651837523, 0.029013539651837523, 0.029980657640232108, 0.03239845261121857, 0.04497098646034816, 0.0425531914893617, 0.041586073500967116, 0.043520309477756286, 0.04110251450676983, 0.059961315280464215, 0.06044487427466151, 0.4071566731141199, 0.36992263056092844, 0.8631528046421664, 0.8882978723404256, 0.940522243713733, 0.9163442940038685, 0.8810444874274661, 0.8525145067698259, 0.3428433268858801, 0.32688588007736946, 0.2935203094777563, 0.16102514506769827, 0.6547388781431335, 0.7838491295938105, 0.6121856866537717, 0.23549323017408125, 0.35880077369439073, 0.14264990328820115, 0.05029013539651837, 0.04110251450676983, 0.039651837524177946, 0.0367504835589942, 0.8293036750483559, 0.0367504835589942, 0.0367504835589942, 0.03868471953578337, 0.03723404255319149, 0.0367504835589942, 0.0367504835589942, 0.03820116054158607, 0.03868471953578337, 0.0362669245647969, 0.0362669245647969, 0.0367504835589942, 0.03723404255319149, 0.03820116054158607, 0.3607350096711799, 0.140715667311412, 0.16344294003868473, 0.1760154738878143, 0.1769825918762089, 0.43907156673114117, 0.4695357833655706, 0.4400386847195358, 0.2761121856866538, 0.9231141199226306, 0.9206963249516441, 0.1890715667311412, 0.1518375241779497, 0.2911025145067698, 0.10783365570599614, 0.097678916827853, 0.07495164410058026, 0.07108317214700194, 0.07108317214700194, 0.0788201160541586, 0.24516441005802708, 0.24226305609284332, 0.8776595744680851, 0.09332688588007737, 0.07736943907156674, 0.0788201160541586, 0.08172147001934237, 0.08172147001934237, 0.08365570599613152, 0.08897485493230174, 0.08897485493230174, 0.09235976789168278, 0.09864603481624758, 0.10638297872340426, 0.10880077369439071, 0.11847195357833655, 0.12040618955512572, 0.12088974854932302, 0.12620889748549324, 0.13104448742746616, 0.1349129593810445, 0.15038684719535783, 0.14748549323017407, 0.19825918762088976, 0.261605415860735, 0.9313346228239845, 0.6426499032882012, 0.26063829787234044, 0.2577369439071567, 0.2374274661508704, 0.41876208897485495, 0.6876208897485493, 0.2640232108317215, 0.2553191489361702, 0.28481624758220503, 0.261605415860735, 0.26934235976789167, 0.28191489361702127, 0.30222437137330754, 0.3293036750483559, 0.3515473887814313, 0.38733075435203096, 0.43133462282398455, 0.5207930367504836, 0.6223404255319149, 0.8525145067698259, 0.9497098646034816], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flavodoxin_5.gap.json b/pfam_gap_rates/Flavodoxin_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05c41de4bdc319d036d020625699974f1690024c
--- /dev/null
+++ b/pfam_gap_rates/Flavodoxin_5.gap.json
@@ -0,0 +1 @@
+{"family": "Flavodoxin_5", "n_seqs": 822, "length": 162, "gap_rates": [0.3746958637469586, 0.08637469586374696, 0.025547445255474453, 0.024330900243309004, 0.02068126520681265, 0.015815085158150853, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.009732360097323601, 0.009732360097323601, 0.009732360097323601, 0.00851581508515815, 0.009732360097323601, 0.009732360097323601, 0.00851581508515815, 0.00851581508515815, 0.00851581508515815, 0.00851581508515815, 0.0072992700729927005, 0.0072992700729927005, 0.00851581508515815, 0.00851581508515815, 0.21897810218978103, 0.20559610705596107, 0.8345498783454988, 0.9051094890510949, 0.8588807785888077, 0.718978102189781, 0.0681265206812652, 0.045012165450121655, 0.019464720194647202, 0.015815085158150853, 0.010948905109489052, 0.006082725060827251, 0.006082725060827251, 0.00851581508515815, 0.9099756690997567, 0.8491484184914841, 0.021897810218978103, 0.49878345498783455, 0.9318734793187348, 0.8540145985401459, 0.4257907542579075, 0.05961070559610705, 0.040145985401459854, 0.012165450121654502, 0.9440389294403893, 0.00851581508515815, 0.006082725060827251, 0.006082725060827251, 0.006082725060827251, 0.006082725060827251, 0.0072992700729927005, 0.006082725060827251, 0.006082725060827251, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.004866180048661801, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.009732360097323601, 0.01338199513381995, 0.0170316301703163, 0.01824817518248175, 0.17761557177615572, 0.13503649635036497, 0.030413625304136254, 0.031630170316301706, 0.032846715328467155, 0.030413625304136254, 0.031630170316301706, 0.0705596107055961, 0.16058394160583941, 0.8856447688564477, 0.12773722627737227, 0.14233576642335766, 0.13260340632603407, 0.12165450121654502, 0.11557177615571776, 0.11435523114355231, 0.11800486618004866, 0.1192214111922141, 0.12043795620437957, 0.12287104622871046, 0.12895377128953772, 0.13381995133819952, 0.14841849148418493, 0.170316301703163, 0.1873479318734793, 0.20802919708029197, 0.22992700729927007, 0.927007299270073, 0.9452554744525548, 0.8978102189781022, 0.26763990267639903, 0.30170316301703165, 0.31143552311435524, 0.3150851581508516, 0.3150851581508516, 0.3077858880778589, 0.7299270072992701, 0.8369829683698297, 0.8698296836982968, 0.8540145985401459, 0.791970802919708, 0.6739659367396593, 0.5900243309002433, 0.3710462287104623, 0.3491484184914842, 0.36009732360097324, 0.402676399026764, 0.3880778588807786, 0.38321167883211676, 0.40875912408759124, 0.4440389294403893, 0.45498783454987834, 0.48661800486618007, 0.5681265206812652, 0.5072992700729927, 0.4902676399026764, 0.48418491484184917, 0.4878345498783455, 0.4878345498783455, 0.4927007299270073, 0.4927007299270073, 0.4927007299270073, 0.5389294403892944, 0.49391727493917276, 0.49635036496350365, 0.5060827250608273, 0.5060827250608273, 0.5097323600973236, 0.51338199513382, 0.51338199513382, 0.5170316301703163, 0.5218978102189781, 0.524330900243309, 0.5279805352798054, 0.5352798053527981, 0.5413625304136253, 0.5437956204379562, 0.5462287104622872, 0.551094890510949, 0.5571776155717761, 0.5608272506082725, 0.572992700729927, 0.5790754257907542, 0.5912408759124088, 0.6021897810218978, 0.6240875912408759, 0.6508515815085159, 0.6788321167883211, 0.7019464720194647, 0.7384428223844283, 0.8102189781021898, 0.8673965936739659, 0.9148418491484185], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FlbT.gap.json b/pfam_gap_rates/FlbT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b07c4e728536784049b1b396ffd37697228815ed
--- /dev/null
+++ b/pfam_gap_rates/FlbT.gap.json
@@ -0,0 +1 @@
+{"family": "FlbT", "n_seqs": 147, "length": 127, "gap_rates": [0.08163265306122448, 0.034013605442176874, 0.027210884353741496, 0.027210884353741496, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.3401360544217687, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.7755102040816326, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.0, 0.19047619047619047, 0.006802721088435374, 0.006802721088435374, 0.0, 0.0, 0.0, 0.9387755102040817, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3129251700680272, 0.2857142857142857, 0.0, 0.0, 0.027210884353741496, 0.0, 0.0, 0.006802721088435374, 0.0, 0.013605442176870748, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.034013605442176874, 0.04081632653061224, 0.047619047619047616, 0.08843537414965986, 0.09523809523809523, 0.23809523809523808], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FlgH.gap.json b/pfam_gap_rates/FlgH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b925c29eec59e139d0488ed1bfa44b73b26d906e
--- /dev/null
+++ b/pfam_gap_rates/FlgH.gap.json
@@ -0,0 +1 @@
+{"family": "FlgH", "n_seqs": 567, "length": 194, "gap_rates": [0.7160493827160493, 0.2698412698412698, 0.11992945326278659, 0.08641975308641975, 0.08112874779541446, 0.07407407407407407, 0.07231040564373897, 0.07231040564373897, 0.07407407407407407, 0.06878306878306878, 0.06701940035273368, 0.41622574955908287, 0.9365079365079365, 0.47619047619047616, 0.41798941798941797, 0.05114638447971781, 0.047619047619047616, 0.042328042328042326, 0.04409171075837742, 0.04409171075837742, 0.04056437389770723, 0.02821869488536155, 0.02821869488536155, 0.02821869488536155, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.021164021164021163, 0.021164021164021163, 0.02292768959435626, 0.04409171075837742, 0.02292768959435626, 0.037037037037037035, 0.04056437389770723, 0.04409171075837742, 0.07231040564373897, 0.12874779541446207, 0.2239858906525573, 0.3439153439153439, 0.5661375661375662, 0.6331569664902998, 0.7072310405643739, 0.8871252204585538, 0.9365079365079365, 0.9488536155202821, 0.9118165784832452, 0.7689594356261023, 0.6578483245149912, 0.6031746031746031, 0.47442680776014107, 0.26102292768959434, 0.1657848324514991, 0.1146384479717813, 0.059964726631393295, 0.04409171075837742, 0.03880070546737213, 0.03527336860670194, 0.024691358024691357, 0.07054673721340388, 0.06878306878306878, 0.06172839506172839, 0.059964726631393295, 0.0564373897707231, 0.059964726631393295, 0.024691358024691357, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.024691358024691357, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.02292768959435626, 0.02292768959435626, 0.02292768959435626, 0.021164021164021163, 0.021164021164021163, 0.02292768959435626, 0.021164021164021163, 0.019400352733686066, 0.019400352733686066, 0.01763668430335097, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.01763668430335097, 0.01763668430335097, 0.01763668430335097, 0.019400352733686066, 0.01763668430335097, 0.014109347442680775, 0.012345679012345678, 0.012345679012345678, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.012345679012345678, 0.024691358024691357, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.014109347442680775, 0.015873015873015872, 0.019400352733686066, 0.021164021164021163, 0.02292768959435626, 0.02292768959435626, 0.02821869488536155, 0.02821869488536155, 0.02821869488536155, 0.029982363315696647, 0.031746031746031744, 0.03350970017636684, 0.03350970017636684, 0.037037037037037035, 0.03350970017636684, 0.03527336860670194, 0.03527336860670194, 0.037037037037037035, 0.037037037037037035, 0.03880070546737213, 0.04056437389770723, 0.04409171075837742, 0.04585537918871252, 0.047619047619047616, 0.0564373897707231, 0.10405643738977072, 0.8430335097001763, 0.1710758377425044, 0.23985890652557318, 0.2945326278659612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliE.gap.json b/pfam_gap_rates/FliE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6db86d9d775d156758fec392cd9bff52e911f02f
--- /dev/null
+++ b/pfam_gap_rates/FliE.gap.json
@@ -0,0 +1 @@
+{"family": "FliE", "n_seqs": 875, "length": 88, "gap_rates": [0.8891428571428571, 0.7977142857142857, 0.6731428571428572, 0.5645714285714286, 0.48, 0.3702857142857143, 0.2914285714285714, 0.21485714285714286, 0.152, 0.09942857142857142, 0.060571428571428575, 0.05028571428571429, 0.03428571428571429, 0.02857142857142857, 0.025142857142857144, 0.8754285714285714, 0.017142857142857144, 0.017142857142857144, 0.014857142857142857, 0.013714285714285714, 0.011428571428571429, 0.016, 0.012571428571428572, 0.014857142857142857, 0.009142857142857144, 0.005714285714285714, 0.004571428571428572, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.0034285714285714284, 0.0034285714285714284, 0.0034285714285714284, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.20685714285714285, 0.7508571428571429, 0.010285714285714285, 0.0034285714285714284, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.001142857142857143, 0.001142857142857143, 0.001142857142857143, 0.001142857142857143, 0.001142857142857143, 0.001142857142857143, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.002285714285714286, 0.012571428571428572, 0.021714285714285714, 0.038857142857142854, 0.19314285714285714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Foie-gras_1.gap.json b/pfam_gap_rates/Foie-gras_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e2c224872114c1d6e92c739c86198937568f6ef
--- /dev/null
+++ b/pfam_gap_rates/Foie-gras_1.gap.json
@@ -0,0 +1 @@
+{"family": "Foie-gras_1", "n_seqs": 338, "length": 332, "gap_rates": [0.5029585798816568, 0.4378698224852071, 0.3994082840236686, 0.33136094674556216, 0.31952662721893493, 0.3136094674556213, 0.2988165680473373, 0.2988165680473373, 0.2988165680473373, 0.2988165680473373, 0.2988165680473373, 0.2988165680473373, 0.2988165680473373, 0.2988165680473373, 0.2988165680473373, 0.28994082840236685, 0.27514792899408286, 0.25443786982248523, 0.2514792899408284, 0.2485207100591716, 0.2514792899408284, 0.2514792899408284, 0.2455621301775148, 0.2455621301775148, 0.24260355029585798, 0.23964497041420119, 0.22189349112426035, 0.21893491124260356, 0.21893491124260356, 0.21893491124260356, 0.21893491124260356, 0.21597633136094674, 0.21597633136094674, 0.21597633136094674, 0.21597633136094674, 0.21597633136094674, 0.21597633136094674, 0.21597633136094674, 0.21597633136094674, 0.21893491124260356, 0.22485207100591717, 0.23372781065088757, 0.23372781065088757, 0.9230769230769231, 0.9319526627218935, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Folate_rec.gap.json b/pfam_gap_rates/Folate_rec.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..401ba710b897e3e87c9b5f299e7655359adb90e2
--- /dev/null
+++ b/pfam_gap_rates/Folate_rec.gap.json
@@ -0,0 +1 @@
+{"family": "Folate_rec", "n_seqs": 246, "length": 201, "gap_rates": [0.6951219512195121, 0.5365853658536586, 0.5609756097560976, 0.5894308943089431, 0.5853658536585366, 0.5203252032520326, 0.483739837398374, 0.47560975609756095, 0.44308943089430897, 0.4105691056910569, 0.35772357723577236, 0.34959349593495936, 0.3089430894308943, 0.2764227642276423, 0.26422764227642276, 0.2682926829268293, 0.943089430894309, 0.21138211382113822, 0.17479674796747968, 0.18699186991869918, 0.2032520325203252, 0.32113821138211385, 0.9186991869918699, 0.9308943089430894, 0.9471544715447154, 0.9471544715447154, 0.9308943089430894, 0.9186991869918699, 0.9186991869918699, 0.11382113821138211, 0.1016260162601626, 0.1016260162601626, 0.09349593495934959, 0.08943089430894309, 0.08943089430894309, 0.08130081300813008, 0.9186991869918699, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.06910569105691057, 0.06910569105691057, 0.06910569105691057, 0.06910569105691057, 0.06504065040650407, 0.06504065040650407, 0.08943089430894309, 0.08943089430894309, 0.07317073170731707, 0.0975609756097561, 0.10569105691056911, 0.7154471544715447, 0.14227642276422764, 0.12601626016260162, 0.2764227642276423, 0.4105691056910569, 0.4349593495934959, 0.5040650406504065, 0.483739837398374, 0.4634146341463415, 0.34146341463414637, 0.943089430894309, 0.9308943089430894, 0.12601626016260162, 0.06910569105691057, 0.04878048780487805, 0.04065040650406504, 0.04065040650406504, 0.036585365853658534, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.036585365853658534, 0.036585365853658534, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.24796747967479674, 0.044715447154471545, 0.32926829268292684, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.17479674796747968, 0.17479674796747968, 0.9146341463414634, 0.08130081300813008, 0.07723577235772358, 0.07317073170731707, 0.6219512195121951, 0.6788617886178862, 0.9349593495934959, 0.6382113821138211, 0.483739837398374, 0.35772357723577236, 0.33739837398373984, 0.32926829268292684, 0.32113821138211385, 0.3048780487804878, 0.3008130081300813, 0.22764227642276422, 0.06910569105691057, 0.06910569105691057, 0.036585365853658534, 0.6016260162601627, 0.032520325203252036, 0.032520325203252036, 0.036585365853658534, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.036585365853658534, 0.036585365853658534, 0.032520325203252036, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.04065040650406504, 0.052845528455284556, 0.17073170731707318, 0.2845528455284553, 0.23983739837398374, 0.23577235772357724, 0.943089430894309, 0.21138211382113822, 0.16260162601626016, 0.14227642276422764, 0.16260162601626016, 0.2073170731707317, 0.943089430894309, 0.15040650406504066, 0.17886178861788618, 0.18699186991869918, 0.16666666666666666, 0.16260162601626016, 0.7439024390243902, 0.16260162601626016, 0.17073170731707318, 0.16666666666666666, 0.5284552845528455, 0.44308943089430897, 0.2886178861788618, 0.2886178861788618, 0.21951219512195122, 0.21138211382113822, 0.9308943089430894, 0.9308943089430894, 0.9308943089430894, 0.17886178861788618, 0.17886178861788618, 0.18699186991869918, 0.16260162601626016, 0.1991869918699187, 0.1991869918699187, 0.1991869918699187, 0.16666666666666666, 0.16666666666666666, 0.17073170731707318, 0.17073170731707318, 0.17073170731707318, 0.17886178861788618, 0.18292682926829268, 0.9227642276422764, 0.9227642276422764, 0.22764227642276422, 0.24796747967479674, 0.26422764227642276, 0.4186991869918699, 0.37398373983739835, 0.3821138211382114, 0.34146341463414637, 0.34959349593495936, 0.3699186991869919, 0.3780487804878049, 0.3943089430894309, 0.8902439024390244, 0.8699186991869918, 0.6544715447154471, 0.6504065040650406, 0.6138211382113821, 0.4796747967479675, 0.4715447154471545, 0.483739837398374, 0.4796747967479675, 0.4796747967479675, 0.4878048780487805, 0.5365853658536586, 0.7520325203252033], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Frataxin_Cyay.gap.json b/pfam_gap_rates/Frataxin_Cyay.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10ad1530c5d8513b8fd20025e2d96f9017f8bc45
--- /dev/null
+++ b/pfam_gap_rates/Frataxin_Cyay.gap.json
@@ -0,0 +1 @@
+{"family": "Frataxin_Cyay", "n_seqs": 533, "length": 123, "gap_rates": [0.474671669793621, 0.2270168855534709, 0.1669793621013133, 0.11069418386491557, 0.07692307692307693, 0.06378986866791744, 0.06378986866791744, 0.0600375234521576, 0.0600375234521576, 0.05628517823639775, 0.054409005628517824, 0.054409005628517824, 0.05628517823639775, 0.05065666041275797, 0.05065666041275797, 0.05065666041275797, 0.04690431519699812, 0.0450281425891182, 0.04690431519699812, 0.0450281425891182, 0.043151969981238276, 0.225140712945591, 0.21388367729831145, 0.20825515947467166, 0.2101313320825516, 0.04127579737335835, 0.04878048780487805, 0.28330206378986866, 0.3545966228893058, 0.2176360225140713, 0.1350844277673546, 0.11632270168855535, 0.8461538461538461, 0.4521575984990619, 0.03377110694183865, 0.0300187617260788, 0.028142589118198873, 0.028142589118198873, 0.02626641651031895, 0.9024390243902439, 0.8686679174484052, 0.02626641651031895, 0.02626641651031895, 0.02626641651031895, 0.0225140712945591, 0.0225140712945591, 0.024390243902439025, 0.024390243902439025, 0.0225140712945591, 0.8067542213883677, 0.06566604127579738, 0.03189493433395872, 0.03189493433395872, 0.016885553470919325, 0.016885553470919325, 0.01876172607879925, 0.020637898686679174, 0.01876172607879925, 0.01876172607879925, 0.013133208255159476, 0.0150093808630394, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.013133208255159476, 0.0150093808630394, 0.0150093808630394, 0.013133208255159476, 0.013133208255159476, 0.34709193245778613, 0.03564727954971857, 0.0150093808630394, 0.016885553470919325, 0.0150093808630394, 0.016885553470919325, 0.020637898686679174, 0.0225140712945591, 0.024390243902439025, 0.02626641651031895, 0.02626641651031895, 0.8311444652908068, 0.849906191369606, 0.8555347091932458, 0.8761726078799249, 0.8818011257035647, 0.8874296435272045, 0.8836772983114447, 0.8780487804878049, 0.8724202626641651, 0.851782363977486, 0.8386491557223265, 0.5384615384615384, 0.50093808630394, 0.0375234521575985, 0.03189493433395872, 0.028142589118198873, 0.03189493433395872, 0.03377110694183865, 0.0600375234521576, 0.0375234521575985, 0.03564727954971857, 0.04878048780487805, 0.039399624765478425, 0.0375234521575985, 0.0375234521575985, 0.0375234521575985, 0.0375234521575985, 0.039399624765478425, 0.039399624765478425, 0.039399624765478425, 0.039399624765478425, 0.043151969981238276, 0.04878048780487805, 0.0600375234521576, 0.09193245778611632, 0.12382739212007504, 0.15947467166979362, 0.24577861163227016, 0.36397748592870544, 0.5966228893058161], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FrhB_FdhB_C.gap.json b/pfam_gap_rates/FrhB_FdhB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..97315be5791b3d9a3a8e41002962ed42e9e72c22
--- /dev/null
+++ b/pfam_gap_rates/FrhB_FdhB_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FtsK_SpoIIIE.gap.json b/pfam_gap_rates/FtsK_SpoIIIE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d18466eb975442426815bf36ba011b387986c63
--- /dev/null
+++ b/pfam_gap_rates/FtsK_SpoIIIE.gap.json
@@ -0,0 +1 @@
+{"family": "FtsK_SpoIIIE", "n_seqs": 4666, "length": 258, "gap_rates": [0.6879554222031719, 0.6219459922846121, 0.589369909987141, 0.5657951135876553, 0.5548649807115302, 0.5447921131590228, 0.5372910415773682, 0.5282897556793827, 0.5182168881268753, 0.5072867552507501, 0.491213030432919, 0.4813544792113159, 0.45177882554650667, 0.4327046720960137, 0.414273467638234, 0.3964852121731676, 0.37762537505357907, 0.3632661808829833, 0.35190741534504927, 0.3437633947706815, 0.33883411915988, 0.33433347621088727, 0.33304757822546077, 0.3317616802400343, 0.35169309901414486, 0.32940420060008574, 0.30818688384054865, 0.2957565366480926, 0.28204029147021004, 0.2736819545649378, 0.2685383626232319, 0.26382340334333476, 0.25889412773253323, 0.2558936990998714, 0.2528932704672096, 0.2486069438491213, 0.24646378054007714, 0.23253321903129018, 0.8975567938276897, 0.9297042434633519, 0.9350621517359623, 0.9243463351907415, 0.8855550792970425, 0.7777539648521218, 0.22053150450064296, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Fumerase_C.gap.json b/pfam_gap_rates/Fumerase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30ccbe9cac24e7e2347c66a7666c9a990695b034
--- /dev/null
+++ b/pfam_gap_rates/Fumerase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Fumerase_C", "n_seqs": 1303, "length": 215, "gap_rates": [0.5057559478127398, 0.49961627014581733, 0.4927091327705295, 0.4896392939370683, 0.4873369148119724, 0.48656945510360705, 0.48503453568687643, 0.4827321565617805, 0.4827321565617805, 0.4827321565617805, 0.4827321565617805, 0.4804297774366846, 0.47889485801995396, 0.476592478894858, 0.4758250191864927, 0.4750575594781274, 0.47352264006139677, 0.4689178818112049, 0.46508058326937834, 0.46508058326937834, 0.46431312356101306, 0.4620107444359171, 0.4620107444359171, 0.6538756715272448, 0.513430544896393, 0.9485801995395242, 0.9424405218726016, 0.44973138910207217, 0.44512663085188026, 0.4328472755180353, 0.40138142747505756, 0.37145049884881043, 0.36377590176515734, 0.3499616270145817, 0.33614735226400616, 0.3215656178050652, 0.6999232540291634, 0.6676899462778204, 0.3914044512663085, 0.11128165771297006, 0.07828089025326171, 0.05065234075211052, 0.039907904834996163, 0.03300076745970836, 0.03069838833461243, 0.02686108979278588, 0.024558710667689946, 0.023023791250959325, 0.023023791250959325, 0.023023791250959325, 0.023023791250959325, 0.023023791250959325, 0.023023791250959325, 0.023023791250959325, 0.022256331542594012, 0.022256331542594012, 0.02072141212586339, 0.019953952417498082, 0.019953952417498082, 0.019953952417498082, 0.01918649270913277, 0.01918649270913277, 0.019953952417498082, 0.019953952417498082, 0.01918649270913277, 0.01918649270913277, 0.01918649270913277, 0.01918649270913277, 0.01918649270913277, 0.01918649270913277, 0.022256331542594012, 0.0283960092095165, 0.15272448196469685, 0.16193399846508058, 0.15963161933998465, 0.10053722179585571, 0.08595548733691481, 0.02072141212586339, 0.019953952417498082, 0.02072141212586339, 0.02072141212586339, 0.01918649270913277, 0.6185725249424405, 0.6155026861089793, 0.023791250959324637, 0.023791250959324637, 0.3177283192632387, 0.3123561013046815, 0.019953952417498082, 0.017651573292402148, 0.017651573292402148, 0.017651573292402148, 0.017651573292402148, 0.017651573292402148, 0.017651573292402148, 0.021488871834228703, 0.026093630084420567, 0.026093630084420567, 0.8319263238679969, 0.8679969301611665, 0.8288564850345357, 0.02686108979278588, 0.03069838833461243, 0.03069838833461243, 0.02916346891788181, 0.02762854950115119, 0.023791250959324637, 0.019953952417498082, 0.022256331542594012, 0.022256331542594012, 0.02072141212586339, 0.01918649270913277, 0.019953952417498082, 0.019953952417498082, 0.019953952417498082, 0.019953952417498082, 0.019953952417498082, 0.019953952417498082, 0.01918649270913277, 0.017651573292402148, 0.017651573292402148, 0.021488871834228703, 0.01841903300076746, 0.017651573292402148, 0.01841903300076746, 0.023023791250959325, 0.01918649270913277, 0.01841903300076746, 0.022256331542594012, 0.2578664620107444, 0.08365310821181889, 0.01688411358403684, 0.016116653875671526, 0.016116653875671526, 0.015349194167306216, 0.013046815042210284, 0.013046815042210284, 0.013046815042210284, 0.013046815042210284, 0.013046815042210284, 0.013814274750575594, 0.013046815042210284, 0.013046815042210284, 0.013814274750575594, 0.013814274750575594, 0.013814274750575594, 0.014581734458940905, 0.016116653875671526, 0.015349194167306216, 0.016116653875671526, 0.015349194167306216, 0.01841903300076746, 0.01918649270913277, 0.016116653875671526, 0.014581734458940905, 0.014581734458940905, 0.015349194167306216, 0.01688411358403684, 0.01841903300076746, 0.016116653875671526, 0.014581734458940905, 0.014581734458940905, 0.014581734458940905, 0.6730621642363775, 0.01841903300076746, 0.01688411358403684, 0.02072141212586339, 0.014581734458940905, 0.01841903300076746, 0.017651573292402148, 0.015349194167306216, 0.016116653875671526, 0.01688411358403684, 0.01918649270913277, 0.01688411358403684, 0.014581734458940905, 0.014581734458940905, 0.015349194167306216, 0.015349194167306216, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.8280890253261703, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.016116653875671526, 0.01688411358403684, 0.01688411358403684, 0.9017651573292402, 0.017651573292402148, 0.017651573292402148, 0.017651573292402148, 0.017651573292402148, 0.017651573292402148, 0.02072141212586339, 0.024558710667689946, 0.023023791250959325, 0.022256331542594012, 0.023023791250959325, 0.023023791250959325, 0.023791250959324637, 0.024558710667689946, 0.0283960092095165, 0.051419800460475826, 0.31619339984650807], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Furin-like_2.gap.json b/pfam_gap_rates/Furin-like_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f67439fdd61e839c9929ede5e5cc4ff7b573f4a1
--- /dev/null
+++ b/pfam_gap_rates/Furin-like_2.gap.json
@@ -0,0 +1 @@
+{"family": "Furin-like_2", "n_seqs": 233, "length": 111, "gap_rates": [0.8841201716738197, 0.6824034334763949, 0.9484978540772532, 0.5793991416309013, 0.5493562231759657, 0.5493562231759657, 0.5450643776824035, 0.5493562231759657, 0.5493562231759657, 0.5450643776824035, 0.5450643776824035, 0.5450643776824035, 0.5450643776824035, 0.5364806866952789, 0.5364806866952789, 0.5364806866952789, 0.5364806866952789, 0.5364806866952789, 0.5321888412017167, 0.5450643776824035, 0.5536480686695279, 0.5407725321888412, 0.5450643776824035, 0.5493562231759657, 0.5793991416309013, 0.5793991416309013, 0.592274678111588, 0.5879828326180258, 0.592274678111588, 0.5536480686695279, 0.5150214592274678, 0.44635193133047213, 0.33476394849785407, 0.21888412017167383, 0.12017167381974249, 0.08583690987124463, 0.08583690987124463, 0.09012875536480687, 0.08583690987124463, 0.0815450643776824, 0.07725321888412018, 0.07725321888412018, 0.07725321888412018, 0.07725321888412018, 0.0815450643776824, 0.13733905579399142, 0.2832618025751073, 0.33047210300429186, 0.3218884120171674, 0.2532188841201717, 0.19742489270386265, 0.15021459227467812, 0.055793991416309016, 0.04291845493562232, 0.04291845493562232, 0.02575107296137339, 0.017167381974248927, 0.012875536480686695, 0.008583690987124463, 0.012875536480686695, 0.6094420600858369, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.02145922746781116, 0.9055793991416309, 0.017167381974248927, 0.02145922746781116, 0.02145922746781116, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.02145922746781116, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.04291845493562232, 0.034334763948497854, 0.034334763948497854, 0.03862660944206009, 0.03862660944206009, 0.03862660944206009, 0.03862660944206009, 0.04721030042918455, 0.0944206008583691, 0.18025751072961374, 0.22317596566523606, 0.26609442060085836, 0.30042918454935624, 0.3218884120171674, 0.3261802575107296, 0.33047210300429186, 0.36909871244635195, 0.5021459227467812, 0.8798283261802575, 0.871244635193133, 0.6523605150214592, 0.6824034334763949, 0.8283261802575107], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GAF_2.gap.json b/pfam_gap_rates/GAF_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56a3ae0604519a185f9537f529ab720511484279
--- /dev/null
+++ b/pfam_gap_rates/GAF_2.gap.json
@@ -0,0 +1 @@
+{"family": "GAF_2", "n_seqs": 5000, "length": 177, "gap_rates": [0.6378, 0.429, 0.3356, 0.2842, 0.2494, 0.2186, 0.1884, 0.1728, 0.1588, 0.1446, 0.1374, 0.1304, 0.1264, 0.1216, 0.1182, 0.115, 0.6874, 0.1248, 0.5152, 0.1044, 0.8078, 0.1018, 0.0962, 0.9214, 0.0864, 0.062, 0.0574, 0.0586, 0.0566, 0.0538, 0.0986, 0.0876, 0.945, 0.1662, 0.1518, 0.0572, 0.0662, 0.8918, 0.9308, 0.7106, 0.2926, 0.301, 0.102, 0.0632, 0.7722, 0.8526, 0.9172, 0.949, 0.9314, 0.887, 0.8104, 0.6736, 0.0458, 0.0522, 0.0444, 0.0416, 0.037, 0.0342, 0.0314, 0.03, 0.029, 0.0304, 0.027, 0.0308, 0.0354, 0.3484, 0.3306, 0.9108, 0.9476, 0.7978, 0.0546, 0.0362, 0.8394, 0.9312, 0.9478, 0.8986, 0.7748, 0.0302, 0.0188, 0.0192, 0.8136, 0.0272, 0.0272, 0.025, 0.0102, 0.009, 0.0092, 0.009, 0.0092, 0.0302, 0.0178, 0.0122, 0.009, 0.0084, 0.0188, 0.0228, 0.0194, 0.84, 0.044, 0.0364, 0.0322, 0.9338, 0.9494, 0.9182, 0.1442, 0.1382, 0.1324, 0.0642, 0.0636, 0.0408, 0.0326, 0.0386, 0.7936, 0.9304, 0.6598, 0.0898, 0.0248, 0.0178, 0.0086, 0.0078, 0.0088, 0.0112, 0.0122, 0.0006, 0.892, 0.934, 0.9224, 0.8734, 0.0002, 0.0002, 0.0002, 0.0004, 0.0006, 0.0106, 0.0114, 0.816, 0.0276, 0.0214, 0.052, 0.0014, 0.0012, 0.0004, 0.0006, 0.0008, 0.0008, 0.0064, 0.894, 0.1248, 0.0532, 0.0216, 0.009, 0.0126, 0.0438, 0.0416, 0.944, 0.8648, 0.0202, 0.0256, 0.0144, 0.0156, 0.0162, 0.0174, 0.0186, 0.0216, 0.0222, 0.0232, 0.0264, 0.0292, 0.041, 0.0564, 0.0776, 0.0946, 0.1212, 0.1694, 0.2192, 0.277, 0.604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GCFC.gap.json b/pfam_gap_rates/GCFC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1081a285dfcf889b203e31e1fa9e0d468a5e0c53
--- /dev/null
+++ b/pfam_gap_rates/GCFC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GDE_N.gap.json b/pfam_gap_rates/GDE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87d67c78d235f9dc5c2903dc9139888152efd895
--- /dev/null
+++ b/pfam_gap_rates/GDE_N.gap.json
@@ -0,0 +1 @@
+{"family": "GDE_N", "n_seqs": 293, "length": 247, "gap_rates": [0.2696245733788396, 0.13993174061433447, 0.08873720136518772, 0.040955631399317405, 0.040955631399317405, 0.040955631399317405, 0.040955631399317405, 0.03754266211604096, 0.03754266211604096, 0.03754266211604096, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.9488054607508533, 0.030716723549488054, 0.030716723549488054, 0.027303754266211604, 0.030716723549488054, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.03754266211604096, 0.06143344709897611, 0.040955631399317405, 0.9419795221843004, 0.8873720136518771, 0.040955631399317405, 0.03754266211604096, 0.040955631399317405, 0.034129692832764506, 0.027303754266211604, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GDYXXLXY.gap.json b/pfam_gap_rates/GDYXXLXY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcf9fe67d8f689dccec3958a6a6bc3df601bb690
--- /dev/null
+++ b/pfam_gap_rates/GDYXXLXY.gap.json
@@ -0,0 +1 @@
+{"family": "GDYXXLXY", "n_seqs": 204, "length": 210, "gap_rates": [0.4166666666666667, 0.12745098039215685, 0.06862745098039216, 0.0392156862745098, 0.03431372549019608, 0.024509803921568627, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.00980392156862745, 0.004901960784313725, 0.0, 0.0, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.0784313725490196, 0.0784313725490196, 0.07352941176470588, 0.07352941176470588, 0.5294117647058824, 0.5882352941176471, 0.6617647058823529, 0.7401960784313726, 0.8235294117647058, 0.8872549019607843, 0.9019607843137255, 0.9313725490196079, 0.8921568627450981, 0.8578431372549019, 0.7794117647058824, 0.7205882352941176, 0.6421568627450981, 0.5637254901960784, 0.4803921568627451, 0.12745098039215685, 0.8284313725490197, 0.5049019607843137, 0.5735294117647058, 0.22549019607843138, 0.16176470588235295, 0.11274509803921569, 0.09803921568627451, 0.07352941176470588, 0.03431372549019608, 0.0196078431372549, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.024509803921568627, 0.1715686274509804, 0.04411764705882353, 0.03431372549019608, 0.03431372549019608, 0.19117647058823528, 0.12745098039215685, 0.09803921568627451, 0.23529411764705882, 0.20588235294117646, 0.1715686274509804, 0.08333333333333333, 0.049019607843137254, 0.03431372549019608, 0.0392156862745098, 0.049019607843137254, 0.058823529411764705, 0.06862745098039216, 0.38235294117647056, 0.5784313725490197, 0.5147058823529411, 0.5343137254901961, 0.43137254901960786, 0.37745098039215685, 0.7941176470588235, 0.8529411764705882, 0.8578431372549019, 0.8676470588235294, 0.8774509803921569, 0.8676470588235294, 0.8676470588235294, 0.8578431372549019, 0.8137254901960784, 0.7941176470588235, 0.06862745098039216, 0.06372549019607843, 0.049019607843137254, 0.049019607843137254, 0.0392156862745098, 0.0392156862745098, 0.03431372549019608, 0.0392156862745098, 0.03431372549019608, 0.6715686274509803, 0.6911764705882353, 0.7450980392156863, 0.7892156862745098, 0.8431372549019608, 0.8823529411764706, 0.9117647058823529, 0.9264705882352942, 0.9362745098039216, 0.946078431372549, 0.9264705882352942, 0.9215686274509803, 0.9068627450980392, 0.8578431372549019, 0.8137254901960784, 0.7549019607843137, 0.7254901960784313, 0.6764705882352942, 0.6568627450980392, 0.049019607843137254, 0.0784313725490196, 0.08333333333333333, 0.09313725490196079, 0.058823529411764705, 0.8186274509803921, 0.8970588235294118, 0.9117647058823529, 0.8676470588235294, 0.6764705882352942, 0.05392156862745098, 0.04411764705882353, 0.03431372549019608, 0.0392156862745098, 0.946078431372549, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.37745098039215685, 0.4215686274509804, 0.4068627450980392, 0.4166666666666667, 0.4019607843137255, 0.7990196078431373, 0.8333333333333334, 0.8676470588235294, 0.9411764705882353, 0.9117647058823529, 0.8578431372549019, 0.8235294117647058, 0.75, 0.06372549019607843, 0.06372549019607843, 0.058823529411764705, 0.058823529411764705, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.07352941176470588, 0.25980392156862747, 0.09803921568627451, 0.09313725490196079, 0.10294117647058823, 0.11274509803921569, 0.11274509803921569, 0.11274509803921569, 0.12745098039215685, 0.1323529411764706, 0.18137254901960784, 0.37254901960784315], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GFO_IDH_MocA_C.gap.json b/pfam_gap_rates/GFO_IDH_MocA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57eef8500e4655cbb664d1f29335413a8d5e07b9
--- /dev/null
+++ b/pfam_gap_rates/GFO_IDH_MocA_C.gap.json
@@ -0,0 +1 @@
+{"family": "GFO_IDH_MocA_C", "n_seqs": 5000, "length": 131, "gap_rates": [0.4802, 0.3634, 0.2678, 0.2124, 0.1858, 0.1646, 0.1532, 0.141, 0.1292, 0.1262, 0.124, 0.1212, 0.1194, 0.1158, 0.1134, 0.217, 0.3794, 0.79, 0.2198, 0.1698, 0.1474, 0.1212, 0.1136, 0.0974, 0.0936, 0.0868, 0.0794, 0.073, 0.0672, 0.0598, 0.0548, 0.0494, 0.0476, 0.0584, 0.1882, 0.2228, 0.283, 0.786, 0.9268, 0.9414, 0.9356, 0.9028, 0.5462, 0.2128, 0.0642, 0.0118, 0.0076, 0.0038, 0.0018, 0.0006, 0.0004, 0.0004, 0.001, 0.0008, 0.0008, 0.0002, 0.0, 0.0, 0.0004, 0.0012, 0.0018, 0.0024, 0.0028, 0.004, 0.0044, 0.0118, 0.0214, 0.031, 0.0448, 0.0604, 0.076, 0.098, 0.114, 0.9286, 0.1478, 0.173, 0.3052, 0.5362, 0.6208, 0.3396, 0.2916, 0.2884, 0.2932, 0.3488, 0.3264, 0.334, 0.3436, 0.3568, 0.3704, 0.3804, 0.3942, 0.4092, 0.6306, 0.8126, 0.914, 0.938, 0.9482, 0.9446, 0.931, 0.9056, 0.7746, 0.6614, 0.6196, 0.5068, 0.4762, 0.4792, 0.4872, 0.4942, 0.5008, 0.5068, 0.5144, 0.5246, 0.5398, 0.556, 0.5726, 0.5888, 0.6062, 0.6256, 0.6508, 0.6774, 0.707, 0.7272, 0.751, 0.7666, 0.7816, 0.7948, 0.8126, 0.8318, 0.8586, 0.8964, 0.9382], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GILT.gap.json b/pfam_gap_rates/GILT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..789ae73b155a07cef0877ccdf95ce23bee2891ef
--- /dev/null
+++ b/pfam_gap_rates/GILT.gap.json
@@ -0,0 +1 @@
+{"family": "GILT", "n_seqs": 517, "length": 125, "gap_rates": [0.816247582205029, 0.1702127659574468, 0.10444874274661509, 0.07930367504835589, 0.07930367504835589, 0.07736943907156674, 0.07156673114119923, 0.07156673114119923, 0.07156673114119923, 0.07156673114119923, 0.06963249516441006, 0.06769825918762089, 0.06769825918762089, 0.06769825918762089, 0.059961315280464215, 0.05609284332688588, 0.14893617021276595, 0.06576402321083172, 0.061895551257253385, 0.05222437137330754, 0.05222437137330754, 0.05029013539651837, 0.05029013539651837, 0.048355899419729204, 0.048355899419729204, 0.048355899419729204, 0.816247582205029, 0.5647969052224371, 0.9497098646034816, 0.05029013539651837, 0.06576402321083172, 0.048355899419729204, 0.04642166344294004, 0.04642166344294004, 0.04448742746615087, 0.0425531914893617, 0.0425531914893617, 0.04061895551257253, 0.03481624758220503, 0.0367504835589942, 0.0367504835589942, 0.029013539651837523, 0.029013539651837523, 0.03868471953578337, 0.03868471953578337, 0.058027079303675046, 0.06769825918762089, 0.08123791102514506, 0.07736943907156674, 0.14893617021276595, 0.3539651837524178, 0.5725338491295938, 0.539651837524178, 0.9284332688588007, 0.804642166344294, 0.4700193423597679, 0.048355899419729204, 0.0367504835589942, 0.029013539651837523, 0.029013539651837523, 0.027079303675048357, 0.0367504835589942, 0.03868471953578337, 0.03868471953578337, 0.0367504835589942, 0.0367504835589942, 0.0367504835589942, 0.0367504835589942, 0.0367504835589942, 0.0367504835589942, 0.0367504835589942, 0.0367504835589942, 0.04061895551257253, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.04448742746615087, 0.9013539651837524, 0.9245647969052224, 0.9323017408123792, 0.9361702127659575, 0.9245647969052224, 0.9168278529980658, 0.8568665377176016, 0.25918762088974856, 0.13926499032882012, 0.05609284332688588, 0.05415860735009671, 0.05222437137330754, 0.05222437137330754, 0.05222437137330754, 0.05415860735009671, 0.05609284332688588, 0.058027079303675046, 0.06382978723404255, 0.06769825918762089, 0.06769825918762089, 0.06963249516441006, 0.07156673114119923, 0.6054158607350096, 0.9110251450676983, 0.941972920696325, 0.7040618955512572, 0.574468085106383, 0.10058027079303675, 0.31334622823984526, 0.16827852998065765, 0.6460348162475822, 0.8916827852998066, 0.7833655705996132, 0.3984526112185687, 0.18375241779497098, 0.9206963249516441, 0.1644100580270793, 0.16247582205029013, 0.15667311411992263, 0.15667311411992263, 0.15667311411992263, 0.15860735009671179, 0.16827852998065765, 0.3520309477756286, 0.6421663442940039], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GIT_SHD.gap.json b/pfam_gap_rates/GIT_SHD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cea3bf627deecc59757fbef2d72bcbfe3ffb1d0c
--- /dev/null
+++ b/pfam_gap_rates/GIT_SHD.gap.json
@@ -0,0 +1 @@
+{"family": "GIT_SHD", "n_seqs": 452, "length": 29, "gap_rates": [0.13938053097345132, 0.07300884955752213, 0.059734513274336286, 0.03761061946902655, 0.028761061946902654, 0.024336283185840708, 0.017699115044247787, 0.01327433628318584, 0.008849557522123894, 0.008849557522123894, 0.004424778761061947, 0.0022123893805309734, 0.0022123893805309734, 0.0022123893805309734, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0022123893805309734, 0.0022123893805309734, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.02654867256637168, 0.0420353982300885, 0.046460176991150445, 0.3407079646017699, 0.6482300884955752], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GIY-YIG.gap.json b/pfam_gap_rates/GIY-YIG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..352886dabe7d3d52cfd73ae14f42392f6340cd0c
--- /dev/null
+++ b/pfam_gap_rates/GIY-YIG.gap.json
@@ -0,0 +1 @@
+{"family": "GIY-YIG", "n_seqs": 5000, "length": 83, "gap_rates": [0.8548, 0.3784, 0.0578, 0.0448, 0.0382, 0.0354, 0.0326, 0.0256, 0.022, 0.019, 0.0298, 0.0172, 0.0116, 0.0232, 0.2112, 0.0054, 0.0052, 0.0046, 0.0046, 0.0026, 0.0022, 0.0022, 0.002, 0.002, 0.0014, 0.001, 0.0006, 0.0006, 0.0006, 0.0004, 0.9432, 0.0004, 0.0014, 0.0022, 0.003, 0.024, 0.0118, 0.0118, 0.015, 0.016, 0.0328, 0.1402, 0.4948, 0.9118, 0.9408, 0.764, 0.4314, 0.0382, 0.0312, 0.0284, 0.0254, 0.0264, 0.0288, 0.0292, 0.9198, 0.0322, 0.032, 0.0348, 0.0328, 0.0328, 0.0326, 0.0342, 0.034, 0.035, 0.0364, 0.04, 0.0628, 0.046, 0.0414, 0.0414, 0.0422, 0.043, 0.044, 0.0454, 0.052, 0.0866, 0.1062, 0.1434, 0.1722, 0.7854, 0.417, 0.5946, 0.6174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GNAT_acetyltr_2.gap.json b/pfam_gap_rates/GNAT_acetyltr_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c61672b10eaedcfb480f9090fcc755177f8fc84
--- /dev/null
+++ b/pfam_gap_rates/GNAT_acetyltr_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GPHR_N.gap.json b/pfam_gap_rates/GPHR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe21e60f24134fc5edc8902cce3308847cedb473
--- /dev/null
+++ b/pfam_gap_rates/GPHR_N.gap.json
@@ -0,0 +1 @@
+{"family": "GPHR_N", "n_seqs": 256, "length": 79, "gap_rates": [0.71875, 0.49609375, 0.1875, 0.1328125, 0.12109375, 0.08203125, 0.0546875, 0.0390625, 0.0390625, 0.03125, 0.02734375, 0.0234375, 0.0234375, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00390625, 0.00390625, 0.00390625, 0.0078125, 0.0078125, 0.0078125, 0.015625, 0.015625, 0.90234375, 0.91796875, 0.90625, 0.890625, 0.02734375, 0.79296875, 0.8515625, 0.9375, 0.9453125, 0.9296875, 0.81640625, 0.7890625, 0.0234375, 0.0546875, 0.046875, 0.04296875, 0.01953125, 0.0234375, 0.01953125, 0.015625, 0.015625, 0.015625, 0.015625, 0.01953125, 0.01953125, 0.01953125, 0.0234375, 0.0234375, 0.0234375, 0.02734375, 0.0390625, 0.05078125, 0.05078125, 0.05078125, 0.0546875, 0.06640625, 0.0703125, 0.0859375, 0.08984375, 0.11328125, 0.17578125, 0.4296875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GRASP55_65.gap.json b/pfam_gap_rates/GRASP55_65.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51211abca7fd1f891ef4cc1f07628d8920942b88
--- /dev/null
+++ b/pfam_gap_rates/GRASP55_65.gap.json
@@ -0,0 +1 @@
+{"family": "GRASP55_65", "n_seqs": 492, "length": 156, "gap_rates": [0.6849593495934959, 0.6382113821138211, 0.5914634146341463, 0.5752032520325203, 0.573170731707317, 0.5691056910569106, 0.5630081300813008, 0.5630081300813008, 0.5609756097560976, 0.556910569105691, 0.540650406504065, 0.5386178861788617, 0.5386178861788617, 0.5365853658536586, 0.5345528455284553, 0.5304878048780488, 0.8577235772357723, 0.5304878048780488, 0.5223577235772358, 0.5447154471544715, 0.5304878048780488, 0.5345528455284553, 0.6280487804878049, 0.6138211382113821, 0.5752032520325203, 0.524390243902439, 0.9390243902439024, 0.9471544715447154, 0.9451219512195121, 0.9369918699186992, 0.4247967479674797, 0.4186991869918699, 0.4166666666666667, 0.4146341463414634, 0.41260162601626016, 0.4105691056910569, 0.4105691056910569, 0.4024390243902439, 0.39634146341463417, 0.3882113821138211, 0.38414634146341464, 0.37601626016260165, 0.3699186991869919, 0.5630081300813008, 0.31910569105691056, 0.2886178861788618, 0.14634146341463414, 0.09959349593495935, 0.07723577235772358, 0.06097560975609756, 0.0508130081300813, 0.046747967479674794, 0.04065040650406504, 0.03861788617886179, 0.014227642276422764, 0.012195121951219513, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.016260162601626018, 0.014227642276422764, 0.02032520325203252, 0.018292682926829267, 0.014227642276422764, 0.014227642276422764, 0.014227642276422764, 0.012195121951219513, 0.026422764227642278, 0.032520325203252036, 0.022357723577235773, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.21747967479674796, 0.8902439024390244, 0.9207317073170732, 0.9308943089430894, 0.8983739837398373, 0.8556910569105691, 0.02032520325203252, 0.022357723577235773, 0.024390243902439025, 0.018292682926829267, 0.9065040650406504, 0.6626016260162602, 0.012195121951219513, 0.01016260162601626, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.01016260162601626, 0.008130081300813009, 0.01016260162601626, 0.01016260162601626, 0.9349593495934959, 0.9369918699186992, 0.9491869918699187, 0.9491869918699187, 0.9410569105691057, 0.9349593495934959, 0.9308943089430894, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.01016260162601626, 0.012195121951219513, 0.012195121951219513, 0.016260162601626018, 0.018292682926829267, 0.022357723577235773, 0.022357723577235773, 0.026422764227642278, 0.026422764227642278, 0.03048780487804878, 0.028455284552845527, 0.022357723577235773, 0.026422764227642278, 0.03048780487804878, 0.07520325203252033, 0.06504065040650407, 0.07926829268292683, 0.08333333333333333, 0.06504065040650407, 0.07113821138211382, 0.08536585365853659, 0.10569105691056911, 0.11382113821138211, 0.11991869918699187, 0.13617886178861788, 0.1443089430894309, 0.15040650406504066, 0.17479674796747968, 0.2459349593495935, 0.2459349593495935, 0.42073170731707316, 0.42886178861788615, 0.4451219512195122, 0.4491869918699187, 0.4491869918699187, 0.4491869918699187, 0.4491869918699187, 0.4573170731707317, 0.4654471544715447, 0.5345528455284553], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GRIP.gap.json b/pfam_gap_rates/GRIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be5b755a777c7373f431022bb8b837ff80a84df1
--- /dev/null
+++ b/pfam_gap_rates/GRIP.gap.json
@@ -0,0 +1 @@
+{"family": "GRIP", "n_seqs": 553, "length": 46, "gap_rates": [0.7197106690777577, 0.2730560578661845, 0.12839059674502712, 0.08499095840867993, 0.054249547920433995, 0.03074141048824593, 0.019891500904159132, 0.0162748643761302, 0.012658227848101266, 0.014466546112115732, 0.009041591320072333, 0.009041591320072333, 0.007233273056057866, 0.0054249547920434, 0.007233273056057866, 0.007233273056057866, 0.0054249547920434, 0.003616636528028933, 0.003616636528028933, 0.9023508137432188, 0.8535262206148282, 0.4430379746835443, 0.28028933092224234, 0.1518987341772152, 0.0216998191681736, 0.018083182640144666, 0.018083182640144666, 0.018083182640144666, 0.05786618444846293, 0.0216998191681736, 0.023508137432188065, 0.0216998191681736, 0.0216998191681736, 0.023508137432188065, 0.023508137432188065, 0.02531645569620253, 0.02531645569620253, 0.028933092224231464, 0.028933092224231464, 0.03616636528028933, 0.059674502712477394, 0.06148282097649186, 0.07956600361663653, 0.12477396021699819, 0.2115732368896926, 0.4719710669077758], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GSDH.gap.json b/pfam_gap_rates/GSDH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e2a24c9555c7d31e6d89c866eac03e1a2ea2632
--- /dev/null
+++ b/pfam_gap_rates/GSDH.gap.json
@@ -0,0 +1 @@
+{"family": "GSDH", "n_seqs": 2194, "length": 449, "gap_rates": [0.6654512306289881, 0.545123062898815, 0.4635369188696445, 0.4389243391066545, 0.42980856882406565, 0.4088422971741112, 0.38742023701002737, 0.3842297174111212, 0.3796718322698268, 0.37556973564266183, 0.37420237010027346, 0.3682771194165907, 0.9252506836827712, 0.35460346399270737, 0.9475843208751139, 0.9325432999088423, 0.33318140382862355, 0.3286235186873291, 0.3263445761166819, 0.3240656335460346, 0.3240656335460346, 0.3226982680036463, 0.32224247948951684, 0.890154968094804, 0.31996353691886964, 0.31768459434822244, 0.31722880583409296, 0.31722880583409296, 0.31722880583409296, 0.31722880583409296, 0.31768459434822244, 0.31814038286235186, 0.9421148587055607, 0.5018231540565178, 0.3309024612579763, 0.31996353691886964, 0.31814038286235186, 0.3268003646308113, 0.8072014585232452, 0.5054694621695534, 0.3391066545123063, 0.32087511394712853, 0.31586144029170465, 0.31677301731996355, 0.31449407474931634, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GSH-S_ATP.gap.json b/pfam_gap_rates/GSH-S_ATP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd2ab47da9b4888b0f60dd3ed5f062a3f784b07f
--- /dev/null
+++ b/pfam_gap_rates/GSH-S_ATP.gap.json
@@ -0,0 +1 @@
+{"family": "GSH-S_ATP", "n_seqs": 692, "length": 176, "gap_rates": [0.18208092485549132, 0.15028901734104047, 0.15028901734104047, 0.14739884393063585, 0.14450867052023122, 0.1416184971098266, 0.1416184971098266, 0.13439306358381503, 0.13439306358381503, 0.12427745664739884, 0.11416184971098266, 0.10549132947976879, 0.09971098265895954, 0.0953757225433526, 0.0953757225433526, 0.09104046242774566, 0.09104046242774566, 0.08526011560693642, 0.08092485549132948, 0.07514450867052024, 0.06791907514450866, 0.06069364161849711, 0.05491329479768786, 0.05346820809248555, 0.05057803468208093, 0.049132947976878616, 0.04335260115606936, 0.04335260115606936, 0.044797687861271675, 0.036127167630057806, 0.030346820809248554, 0.017341040462427744, 0.017341040462427744, 0.884393063583815, 0.014450867052023121, 0.014450867052023121, 0.01300578034682081, 0.01300578034682081, 0.01300578034682081, 0.01300578034682081, 0.01300578034682081, 0.01300578034682081, 0.014450867052023121, 0.01300578034682081, 0.01300578034682081, 0.01300578034682081, 0.01300578034682081, 0.01300578034682081, 0.01300578034682081, 0.01300578034682081, 0.015895953757225433, 0.015895953757225433, 0.017341040462427744, 0.03757225433526012, 0.8930635838150289, 0.024566473988439308, 0.02023121387283237, 0.02167630057803468, 0.02023121387283237, 0.02167630057803468, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.024566473988439308, 0.024566473988439308, 0.02023121387283237, 0.01878612716763006, 0.024566473988439308, 0.02745664739884393, 0.024566473988439308, 0.023121387283236993, 0.0968208092485549, 0.06791907514450866, 0.010115606936416185, 0.011560693641618497, 0.014450867052023121, 0.015895953757225433, 0.017341040462427744, 0.02167630057803468, 0.02167630057803468, 0.02167630057803468, 0.02167630057803468, 0.015895953757225433, 0.02023121387283237, 0.02023121387283237, 0.02601156069364162, 0.014450867052023121, 0.01300578034682081, 0.011560693641618497, 0.011560693641618497, 0.01300578034682081, 0.01300578034682081, 0.014450867052023121, 0.017341040462427744, 0.014450867052023121, 0.015895953757225433, 0.017341040462427744, 0.015895953757225433, 0.017341040462427744, 0.5361271676300579, 0.023121387283236993, 0.02023121387283237, 0.02023121387283237, 0.01878612716763006, 0.02023121387283237, 0.01878612716763006, 0.028901734104046242, 0.030346820809248554, 0.04046242774566474, 0.04046242774566474, 0.04190751445086705, 0.04190751445086705, 0.0476878612716763, 0.0476878612716763, 0.049132947976878616, 0.05057803468208093, 0.046242774566473986, 0.05202312138728324, 0.05202312138728324, 0.05346820809248555, 0.05491329479768786, 0.059248554913294796, 0.06213872832369942, 0.06502890173410404, 0.06502890173410404, 0.06936416184971098, 0.06936416184971098, 0.0708092485549133, 0.0708092485549133, 0.0708092485549133, 0.0708092485549133, 0.07225433526011561, 0.0708092485549133, 0.0708092485549133, 0.0708092485549133, 0.07225433526011561, 0.08526011560693642, 0.08959537572254335, 0.09104046242774566, 0.09393063583815028, 0.0953757225433526, 0.10115606936416185, 0.10404624277456648, 0.1069364161849711, 0.1199421965317919, 0.11849710982658959, 0.12283236994219653, 0.12283236994219653, 0.12427745664739884, 0.12427745664739884, 0.12427745664739884, 0.12427745664739884, 0.12427745664739884, 0.12572254335260116, 0.13005780346820808, 0.1315028901734104, 0.13583815028901733, 0.13583815028901733, 0.13583815028901733, 0.13583815028901733, 0.13728323699421965, 0.13728323699421965, 0.13728323699421965, 0.13728323699421965, 0.14017341040462428, 0.14017341040462428, 0.14017341040462428, 0.14595375722543352, 0.14595375722543352, 0.14739884393063585, 0.1546242774566474, 0.16329479768786126, 0.16907514450867053, 0.18208092485549132, 0.2254335260115607, 0.6777456647398844], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GSHPx.gap.json b/pfam_gap_rates/GSHPx.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d43fd3324b059c37ab7986a66cc440345c10a6ef
--- /dev/null
+++ b/pfam_gap_rates/GSHPx.gap.json
@@ -0,0 +1 @@
+{"family": "GSHPx", "n_seqs": 2124, "length": 114, "gap_rates": [0.358286252354049, 0.2937853107344633, 0.2627118644067797, 0.24105461393596986, 0.2231638418079096, 0.20527306967984935, 0.1869114877589454, 0.16807909604519775, 0.153954802259887, 0.1322975517890772, 0.12335216572504708, 0.1115819209039548, 0.11064030131826742, 0.10875706214689265, 0.1059322033898305, 0.10310734463276836, 0.09934086629001883, 0.09887005649717515, 0.09698681732580038, 0.09416195856873823, 0.08945386064030132, 0.08898305084745763, 0.09133709981167608, 0.08662900188323917, 0.0856873822975518, 0.0856873822975518, 0.0852165725047081, 0.0856873822975518, 0.0903954802259887, 0.09369114877589454, 0.09322033898305085, 0.09745762711864407, 0.09934086629001883, 0.09839924670433145, 0.09416195856873823, 0.0908662900188324, 0.08615819209039548, 0.7612994350282486, 0.08050847457627118, 0.07721280602636535, 0.0739171374764595, 0.0692090395480226, 0.0583804143126177, 0.05602636534839925, 0.05367231638418079, 0.04849340866290019, 0.0475517890772128, 0.047080979284369114, 0.04566854990583804, 0.046610169491525424, 0.04472693032015066, 0.07862523540489642, 0.052259887005649715, 0.036252354048964215, 0.0371939736346516, 0.03672316384180791, 0.036252354048964215, 0.036252354048964215, 0.0371939736346516, 0.0371939736346516, 0.03672316384180791, 0.03531073446327684, 0.03531073446327684, 0.03248587570621469, 0.03531073446327684, 0.08945386064030132, 0.051318267419962336, 0.025423728813559324, 0.022128060263653482, 0.023540489642184557, 0.02401129943502825, 0.025423728813559324, 0.02448210922787194, 0.02448210922787194, 0.023069679849340868, 0.9270244821092278, 0.9331450094161958, 0.9326741996233522, 0.9260828625235404, 0.021657250470809793, 0.022128060263653482, 0.0211864406779661, 0.021657250470809793, 0.023069679849340868, 0.023069679849340868, 0.02401129943502825, 0.08286252354048965, 0.9256120527306968, 0.03672316384180791, 0.030602636534839925, 0.02871939736346516, 0.030131826741996232, 0.027306967984934087, 0.026836158192090395, 0.027306967984934087, 0.027306967984934087, 0.027306967984934087, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02871939736346516, 0.031073446327683617, 0.03483992467043315, 0.03436911487758945, 0.03436911487758945, 0.03436911487758945, 0.03483992467043315, 0.03531073446327684, 0.03766478342749529, 0.039077212806026364, 0.039077212806026364, 0.047080979284369114, 0.07297551789077213, 0.4152542372881356], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GSH_synthase.gap.json b/pfam_gap_rates/GSH_synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3223de6b02d599a75d65295149c2965173f2b375
--- /dev/null
+++ b/pfam_gap_rates/GSH_synthase.gap.json
@@ -0,0 +1 @@
+{"family": "GSH_synthase", "n_seqs": 405, "length": 123, "gap_rates": [0.7975308641975308, 0.14814814814814814, 0.08148148148148149, 0.07654320987654321, 0.07160493827160494, 0.07160493827160494, 0.07160493827160494, 0.07160493827160494, 0.06666666666666667, 0.0691358024691358, 0.06419753086419754, 0.05432098765432099, 0.05432098765432099, 0.05185185185185185, 0.04691358024691358, 0.04938271604938271, 0.044444444444444446, 0.04197530864197531, 0.03950617283950617, 0.04197530864197531, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.037037037037037035, 0.0345679012345679, 0.0345679012345679, 0.04197530864197531, 0.04197530864197531, 0.6765432098765433, 0.8864197530864197, 0.18765432098765433, 0.03950617283950617, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.037037037037037035, 0.0345679012345679, 0.037037037037037035, 0.037037037037037035, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.0962962962962963, 0.07654320987654321, 0.9358024691358025, 0.9407407407407408, 0.8938271604938272, 0.7037037037037037, 0.5234567901234568, 0.11358024691358025, 0.056790123456790124, 0.05432098765432099, 0.05185185185185185, 0.05185185185185185, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.044444444444444446, 0.04938271604938271, 0.44938271604938274, 0.6370370370370371, 0.6592592592592592, 0.7185185185185186, 0.908641975308642, 0.9185185185185185, 0.9407407407407408, 0.9432098765432099, 0.9432098765432099, 0.9382716049382716, 0.9135802469135802, 0.8938271604938272, 0.691358024691358, 0.6395061728395062, 0.582716049382716, 0.024691358024691357, 0.022222222222222223, 0.019753086419753086, 0.019753086419753086, 0.019753086419753086, 0.019753086419753086, 0.019753086419753086, 0.019753086419753086, 0.019753086419753086, 0.019753086419753086, 0.01728395061728395, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.01728395061728395, 0.01728395061728395, 0.019753086419753086, 0.012345679012345678, 0.012345679012345678, 0.0691358024691358, 0.08395061728395062, 0.019753086419753086, 0.022222222222222223, 0.024691358024691357, 0.02962962962962963, 0.02962962962962963, 0.027160493827160494, 0.027160493827160494, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.03209876543209877, 0.037037037037037035, 0.037037037037037035, 0.0345679012345679, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.03950617283950617, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.04691358024691358, 0.2123456790123457], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GST_C_2.gap.json b/pfam_gap_rates/GST_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..497ff57146586e1f1e56acbf47453fec0341a556
--- /dev/null
+++ b/pfam_gap_rates/GST_C_2.gap.json
@@ -0,0 +1 @@
+{"family": "GST_C_2", "n_seqs": 3390, "length": 90, "gap_rates": [0.9262536873156342, 0.7389380530973452, 0.6171091445427729, 0.5342182890855457, 0.4474926253687316, 0.39085545722713866, 0.27256637168141595, 0.21946902654867256, 0.17581120943952802, 0.1415929203539823, 0.10471976401179942, 0.08230088495575222, 0.06371681415929203, 0.04749262536873156, 0.03805309734513274, 0.032448377581120944, 0.024778761061946902, 0.02182890855457227, 0.019174041297935103, 0.016519174041297935, 0.01592920353982301, 0.01976401179941003, 0.012094395280235988, 0.9418879056047198, 0.9463126843657818, 0.9247787610619469, 0.007669616519174041, 0.032448377581120944, 0.046902654867256637, 0.8769911504424779, 0.9100294985250738, 0.7430678466076697, 0.5823008849557522, 0.027138643067846607, 0.007374631268436578, 0.0017699115044247787, 0.0014749262536873156, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002949852507374631, 0.0002949852507374631, 0.0005899705014749262, 0.0014749262536873156, 0.002654867256637168, 0.004129793510324484, 0.006194690265486726, 0.009734513274336283, 0.9392330383480826, 0.016519174041297935, 0.023303834808259587, 0.026253687315634218, 0.8666666666666667, 0.9191740412979351, 0.8324483775811209, 0.03303834808259587, 0.14365781710914455, 0.15604719764011798, 0.1448377581120944, 0.556047197640118, 0.7085545722713864, 0.8386430678466077, 0.940117994100295, 0.9333333333333333, 0.7539823008849558, 0.5899705014749262, 0.528023598820059, 0.13480825958702064, 0.1454277286135693, 0.1168141592920354, 0.8657817109144543, 0.8067846607669616, 0.1088495575221239, 0.09380530973451327, 0.09351032448377582, 0.09616519174041298, 0.09911504424778761, 0.10176991150442478, 0.1088495575221239, 0.12212389380530973, 0.13805309734513274, 0.22035398230088496, 0.356047197640118, 0.6622418879056047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GSu_C4xC__C2xCH.gap.json b/pfam_gap_rates/GSu_C4xC__C2xCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de5fc846c5d1fae8935e1117a0cc28771b156e76
--- /dev/null
+++ b/pfam_gap_rates/GSu_C4xC__C2xCH.gap.json
@@ -0,0 +1 @@
+{"family": "GSu_C4xC__C2xCH", "n_seqs": 143, "length": 53, "gap_rates": [0.3706293706293706, 0.0, 0.0, 0.03496503496503497, 0.0, 0.0, 0.0, 0.0, 0.013986013986013986, 0.03496503496503497, 0.8461538461538461, 0.8881118881118881, 0.9020979020979021, 0.8811188811188811, 0.8461538461538461, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02097902097902098, 0.16083916083916083, 0.16083916083916083, 0.16783216783216784, 0.16783216783216784, 0.25874125874125875, 0.5874125874125874, 0.7832167832167832, 0.8881118881118881, 0.9230769230769231, 0.9370629370629371, 0.9020979020979021, 0.8741258741258742, 0.6923076923076923, 0.5314685314685315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8951048951048951, 0.9440559440559441, 0.8111888111888111, 0.3076923076923077, 0.26573426573426573, 0.4125874125874126, 0.0, 0.0, 0.0, 0.0, 0.0], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GTA_TIM.gap.json b/pfam_gap_rates/GTA_TIM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f6f2ac38e56e001378133cc0c3ec4296a9e14de
--- /dev/null
+++ b/pfam_gap_rates/GTA_TIM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GUB_WAK_bind.gap.json b/pfam_gap_rates/GUB_WAK_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3be33aef36ac7be7b26cb9381e8232e52df0f2c5
--- /dev/null
+++ b/pfam_gap_rates/GUB_WAK_bind.gap.json
@@ -0,0 +1 @@
+{"family": "GUB_WAK_bind", "n_seqs": 1708, "length": 136, "gap_rates": [0.4707259953161593, 0.23770491803278687, 0.12646370023419204, 0.9028103044496487, 0.10421545667447307, 0.9121779859484778, 0.11065573770491803, 0.05035128805620609, 0.04156908665105386, 0.03629976580796253, 0.03629976580796253, 0.03337236533957846, 0.9010538641686182, 0.022833723653395786, 0.01873536299765808, 0.018149882903981264, 0.01639344262295082, 0.015807962529274005, 0.01639344262295082, 0.014637002341920375, 0.014637002341920375, 0.9016393442622951, 0.90807962529274, 0.9238875878220141, 0.9033957845433255, 0.8987119437939111, 0.012295081967213115, 0.01053864168618267, 0.800351288056206, 0.819672131147541, 0.7148711943793911, 0.008782201405152224, 0.008782201405152224, 0.00819672131147541, 0.009953161592505855, 0.9156908665105387, 0.949648711943794, 0.8916861826697893, 0.5567915690866511, 0.02459016393442623, 0.01990632318501171, 0.01990632318501171, 0.007611241217798595, 0.00819672131147541, 0.007611241217798595, 0.007611241217798595, 0.007611241217798595, 0.008782201405152224, 0.008782201405152224, 0.4028103044496487, 0.8957845433255269, 0.9408665105386417, 0.8366510538641686, 0.33548009367681497, 0.0661592505854801, 0.04274004683840749, 0.029859484777517563, 0.039227166276346606, 0.03864168618266979, 0.20725995316159251, 0.8220140515222483, 0.949648711943794, 0.9039812646370023, 0.7429742388758782, 0.20374707259953162, 0.0702576112412178, 0.02459016393442623, 0.02576112412177986, 0.027517564402810304, 0.02927400468384075, 0.02810304449648712, 0.028688524590163935, 0.029859484777517563, 0.032201405152224825, 0.03395784543325527, 0.11943793911007025, 0.06147540983606557, 0.053864168618266976, 0.9473067915690867, 0.05562060889929742, 0.04800936768149883, 0.05503512880562061, 0.056791569086651054, 0.05035128805620609, 0.053864168618266976, 0.059718969555035126, 0.9180327868852459, 0.07318501170960187, 0.12822014051522249, 0.927400468384075, 0.1481264637002342, 0.13173302107728338, 0.1364168618266979, 0.14344262295081966, 0.15163934426229508, 0.16334894613583137, 0.17740046838407494, 0.1920374707259953, 0.20843091334894615, 0.21838407494145198, 0.23594847775175645, 0.2617096018735363, 0.44437939110070257, 0.9098360655737705, 0.822599531615925, 0.3770491803278688, 0.32084309133489464, 0.29098360655737704, 0.27634660421545665, 0.2681498829039813, 0.275175644028103, 0.2775175644028103, 0.2734192037470726, 0.7822014051522248, 0.9139344262295082, 0.8384074941451991, 0.5966042154566745, 0.2857142857142857, 0.9262295081967213, 0.2927400468384075, 0.2898126463700234, 0.28688524590163933, 0.3003512880562061, 0.2962529274004684, 0.3009367681498829, 0.3003512880562061, 0.3015222482435597, 0.30210772833723654, 0.3050351288056206, 0.3073770491803279, 0.30971896955503514, 0.3126463700234192, 0.3149882903981265, 0.32903981264637, 0.373536299765808, 0.8138173302107728], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GUCT.gap.json b/pfam_gap_rates/GUCT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d912a4f2a619f81556d76a2085e79b4fa6d250d
--- /dev/null
+++ b/pfam_gap_rates/GUCT.gap.json
@@ -0,0 +1 @@
+{"family": "GUCT", "n_seqs": 219, "length": 118, "gap_rates": [0.182648401826484, 0.1780821917808219, 0.1415525114155251, 0.0730593607305936, 0.589041095890411, 0.0410958904109589, 0.0410958904109589, 0.0319634703196347, 0.0182648401826484, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0091324200913242, 0.8904109589041096, 0.9497716894977168, 0.9360730593607306, 0.8264840182648402, 0.0547945205479452, 0.0410958904109589, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0730593607305936, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0136986301369863, 0.0182648401826484, 0.0091324200913242, 0.771689497716895, 0.7899543378995434, 0.7488584474885844, 0.0273972602739726, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045662100456621, 0.0, 0.0045662100456621, 0.0045662100456621, 0.0091324200913242, 0.0228310502283105, 0.0228310502283105, 0.7899543378995434, 0.7899543378995434, 0.0273972602739726, 0.0228310502283105, 0.0273972602739726, 0.0319634703196347, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.045662100456621, 0.045662100456621, 0.0502283105022831, 0.0547945205479452, 0.0502283105022831, 0.0502283105022831, 0.0547945205479452, 0.0639269406392694, 0.0684931506849315, 0.9041095890410958, 0.908675799086758, 0.9269406392694064, 0.9360730593607306, 0.9360730593607306, 0.9223744292237442, 0.908675799086758, 0.8995433789954338, 0.3515981735159817, 0.1872146118721461, 0.91324200913242, 0.9452054794520548, 0.9315068493150684, 0.8767123287671232, 0.1141552511415525, 0.1278538812785388, 0.091324200913242, 0.0958904109589041, 0.1004566210045662, 0.1004566210045662, 0.1004566210045662, 0.1004566210045662, 0.1095890410958904, 0.1095890410958904, 0.1141552511415525, 0.1141552511415525, 0.1232876712328767, 0.1278538812785388, 0.1324200913242009, 0.1598173515981735, 0.3835616438356164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GWT1.gap.json b/pfam_gap_rates/GWT1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..392ffbbef94ca870184967832951cb900fa55e27
--- /dev/null
+++ b/pfam_gap_rates/GWT1.gap.json
@@ -0,0 +1 @@
+{"family": "GWT1", "n_seqs": 299, "length": 219, "gap_rates": [0.1505016722408027, 0.056856187290969896, 0.056856187290969896, 0.056856187290969896, 0.056856187290969896, 0.056856187290969896, 0.056856187290969896, 0.056856187290969896, 0.05351170568561873, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.04013377926421405, 0.043478260869565216, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.38461538461538464, 0.38461538461538464, 0.411371237458194, 0.4414715719063545, 0.7491638795986622, 0.7625418060200669, 0.8060200668896321, 0.8193979933110368, 0.8361204013377926, 0.8595317725752508, 0.8662207357859532, 0.882943143812709, 0.8963210702341137, 0.8996655518394648, 0.903010033444816, 0.9096989966555183, 0.9130434782608695, 0.9264214046822743, 0.9364548494983278, 0.939799331103679, 0.9498327759197325, 0.9431438127090301, 0.939799331103679, 0.9331103678929766, 0.9230769230769231, 0.9096989966555183, 0.9096989966555183, 0.8996655518394648, 0.8996655518394648, 0.8929765886287625, 0.8729096989966555, 0.8662207357859532, 0.842809364548495, 0.8260869565217391, 0.8160535117056856, 0.802675585284281, 0.7625418060200669, 0.745819397993311, 0.4682274247491639, 0.6053511705685619, 0.5986622073578596, 0.40468227424749165, 0.8160535117056856, 0.8762541806020067, 0.9063545150501672, 0.9464882943143813, 0.9297658862876255, 0.8862876254180602, 0.8662207357859532, 0.8060200668896321, 0.33444816053511706, 0.22073578595317725, 0.1939799331103679, 0.12709030100334448, 0.11036789297658862, 0.08695652173913043, 0.07023411371237458, 0.06354515050167224, 0.056856187290969896, 0.046822742474916385, 0.03678929765886288, 0.03678929765886288, 0.04013377926421405, 0.033444816053511704, 0.033444816053511704, 0.030100334448160536, 0.033444816053511704, 0.030100334448160536, 0.033444816053511704, 0.03678929765886288, 0.03678929765886288, 0.033444816053511704, 0.033444816053511704, 0.04013377926421405, 0.04013377926421405, 0.046822742474916385, 0.12374581939799331, 0.09698996655518395, 0.07023411371237458, 0.07692307692307693, 0.07357859531772576, 0.07692307692307693, 0.07357859531772576, 0.07357859531772576, 0.13043478260869565, 0.06354515050167224, 0.705685618729097, 0.8260869565217391, 0.8795986622073578, 0.7625418060200669, 0.6555183946488294, 0.10367892976588629, 0.043478260869565216, 0.04013377926421405, 0.04013377926421405, 0.033444816053511704, 0.033444816053511704, 0.04013377926421405, 0.04013377926421405, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.046822742474916385, 0.05016722408026756, 0.05016722408026756, 0.05351170568561873, 0.05016722408026756, 0.05016722408026756, 0.05016722408026756, 0.9464882943143813, 0.056856187290969896, 0.056856187290969896, 0.056856187290969896, 0.056856187290969896, 0.30434782608695654, 0.31438127090301005, 0.3612040133779264, 0.4916387959866221, 0.451505016722408, 0.5150501672240803, 0.5351170568561873, 0.7625418060200669, 0.7959866220735786, 0.8260869565217391, 0.842809364548495, 0.8528428093645485, 0.8662207357859532, 0.8795986622073578, 0.8929765886287625, 0.9063545150501672, 0.9230769230769231, 0.9464882943143813, 0.919732441471572, 0.903010033444816, 0.8929765886287625, 0.8695652173913043, 0.8662207357859532, 0.842809364548495, 0.8327759197324415, 0.8160535117056856, 0.7792642140468228, 0.7023411371237458, 0.5183946488294314, 0.5117056856187291, 0.45484949832775917, 0.43812709030100333, 0.4280936454849498, 0.40468227424749165, 0.38461538461538464, 0.36789297658862874, 0.3377926421404682, 0.2976588628762542, 0.15384615384615385, 0.13712374581939799, 0.09698996655518395, 0.08695652173913043, 0.08361204013377926, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.0802675585284281, 0.08361204013377926, 0.08361204013377926, 0.08361204013377926, 0.08361204013377926, 0.08695652173913043, 0.09364548494983277, 0.09364548494983277, 0.09364548494983277, 0.09698996655518395, 0.09698996655518395, 0.10702341137123746, 0.10702341137123746, 0.11705685618729098, 0.13377926421404682], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gal-bind_lectin.gap.json b/pfam_gap_rates/Gal-bind_lectin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..730da50f04caf7023bd5eaf353c8fcc13583f057
--- /dev/null
+++ b/pfam_gap_rates/Gal-bind_lectin.gap.json
@@ -0,0 +1 @@
+{"family": "Gal-bind_lectin", "n_seqs": 1218, "length": 217, "gap_rates": [0.7889983579638752, 0.5960591133004927, 0.4876847290640394, 0.4187192118226601, 0.3981937602627258, 0.37438423645320196, 0.33579638752052543, 0.2536945812807882, 0.22413793103448276, 0.2019704433497537, 0.19376026272577998, 0.18308702791461412, 0.17898193760262726, 0.17733990147783252, 0.17405582922824303, 0.16748768472906403, 0.16666666666666666, 0.16584564860426929, 0.16338259441707717, 0.16091954022988506, 0.15763546798029557, 0.1568144499178982, 0.1568144499178982, 0.916256157635468, 0.25287356321839083, 0.23809523809523808, 0.13464696223316913, 0.9211822660098522, 0.922824302134647, 0.9244663382594417, 0.9261083743842364, 0.9277504105090312, 0.9285714285714286, 0.9310344827586207, 0.9425287356321839, 0.9441707717569786, 0.9499178981937603, 0.9441707717569786, 0.9392446633825944, 0.9293924466338259, 0.9285714285714286, 0.9261083743842364, 0.9244663382594417, 0.9244663382594417, 0.9220032840722496, 0.9113300492610837, 0.11658456486042693, 0.10180623973727422, 0.0960591133004926, 0.09277504105090312, 0.09195402298850575, 0.09195402298850575, 0.090311986863711, 0.090311986863711, 0.09113300492610837, 0.09113300492610837, 0.6091954022988506, 0.9220032840722496, 0.7561576354679803, 0.5886699507389163, 0.4885057471264368, 0.44991789819376027, 0.3866995073891626, 0.20525451559934318, 0.07307060755336617, 0.06978653530377668, 0.06978653530377668, 0.06896551724137931, 0.06732348111658457, 0.06732348111658457, 0.06814449917898194, 0.06732348111658457, 0.06568144499178982, 0.06239737274220033, 0.06157635467980296, 0.06157635467980296, 0.060755336617405585, 0.6830870279146142, 0.7413793103448276, 0.9105090311986864, 0.8037766830870279, 0.7134646962233169, 0.6009852216748769, 0.08538587848932677, 0.06568144499178982, 0.06157635467980296, 0.06321839080459771, 0.059113300492610835, 0.05993431855500821, 0.059113300492610835, 0.05747126436781609, 0.052545155993431854, 0.053366174055829226, 0.046798029556650245, 0.04926108374384237, 0.9064039408866995, 0.046798029556650245, 0.04597701149425287, 0.04597701149425287, 0.0451559934318555, 0.0451559934318555, 0.042692939244663386, 0.8201970443349754, 0.8308702791461412, 0.8349753694581281, 0.8374384236453202, 0.8382594417077176, 0.8390804597701149, 0.8399014778325123, 0.8399014778325123, 0.8415435139573071, 0.8415435139573071, 0.8431855500821018, 0.8431855500821018, 0.8440065681444991, 0.8464696223316913, 0.8481116584564861, 0.8481116584564861, 0.8481116584564861, 0.8481116584564861, 0.8489326765188834, 0.8505747126436781, 0.8530377668308703, 0.8620689655172413, 0.8653530377668309, 0.8669950738916257, 0.8801313628899836, 0.8686371100164204, 0.8653530377668309, 0.8620689655172413, 0.8538587848932676, 0.8513957307060755, 0.8497536945812808, 0.8489326765188834, 0.8481116584564861, 0.8481116584564861, 0.8481116584564861, 0.8481116584564861, 0.8448275862068966, 0.8440065681444991, 0.8431855500821018, 0.8423645320197044, 0.8415435139573071, 0.8407224958949097, 0.8399014778325123, 0.8399014778325123, 0.8390804597701149, 0.8374384236453202, 0.8374384236453202, 0.8333333333333334, 0.8292282430213465, 0.7733990147783252, 0.6001642036124795, 0.22085385878489328, 0.040229885057471264, 0.03858784893267652, 0.0361247947454844, 0.035303776683087026, 0.034482758620689655, 0.03858784893267652, 0.03694581280788178, 0.0361247947454844, 0.035303776683087026, 0.0361247947454844, 0.03694581280788178, 0.03776683087027915, 0.040229885057471264, 0.042692939244663386, 0.04187192118226601, 0.04433497536945813, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.05008210180623974, 0.05008210180623974, 0.046798029556650245, 0.05090311986863711, 0.05829228243021346, 0.06732348111658457, 0.06978653530377668, 0.06978653530377668, 0.07142857142857142, 0.07799671592775041, 0.0755336617405583, 0.08210180623973727, 0.07881773399014778, 0.07799671592775041, 0.07717569786535304, 0.07717569786535304, 0.07717569786535304, 0.07799671592775041, 0.9400656814449918, 0.9252873563218391, 0.08210180623973727, 0.08538587848932677, 0.08702791461412152, 0.8292282430213465, 0.7077175697865353, 0.08784893267651889, 0.09359605911330049, 0.09523809523809523, 0.0960591133004926, 0.09688013136288999, 0.09852216748768473, 0.10180623973727422, 0.10344827586206896, 0.10673234811165845, 0.11083743842364532, 0.12561576354679804, 0.12315270935960591, 0.13711001642036125, 0.16912972085385877, 0.17980295566502463, 0.19786535303776684, 0.2545155993431856, 0.4088669950738916, 0.9121510673234812], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gamma-thionin.gap.json b/pfam_gap_rates/Gamma-thionin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7768371e3c9701b94c572cdedbdb089356d8116c
--- /dev/null
+++ b/pfam_gap_rates/Gamma-thionin.gap.json
@@ -0,0 +1 @@
+{"family": "Gamma-thionin", "n_seqs": 311, "length": 53, "gap_rates": [0.3762057877813505, 0.15112540192926044, 0.04823151125401929, 0.022508038585209004, 0.01929260450160772, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.012861736334405145, 0.00964630225080386, 0.00964630225080386, 0.006430868167202572, 0.0, 0.9389067524115756, 0.9260450160771704, 0.0, 0.0, 0.0, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.012861736334405145, 0.012861736334405145, 0.8006430868167203, 0.01607717041800643, 0.01607717041800643, 0.01929260450160772, 0.022508038585209004, 0.022508038585209004, 0.20257234726688103, 0.7009646302250804, 0.9389067524115756, 0.6655948553054662, 0.12218649517684887, 0.05144694533762058, 0.04823151125401929, 0.04501607717041801, 0.05466237942122187, 0.05787781350482315, 0.05787781350482315, 0.06430868167202572, 0.0707395498392283, 0.10932475884244373, 0.08360128617363344], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gas_vesicle.gap.json b/pfam_gap_rates/Gas_vesicle.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8807489faf78f6ab6614aa69c1646bf1c767d731
--- /dev/null
+++ b/pfam_gap_rates/Gas_vesicle.gap.json
@@ -0,0 +1 @@
+{"family": "Gas_vesicle", "n_seqs": 304, "length": 39, "gap_rates": [0.20723684210526316, 0.023026315789473683, 0.013157894736842105, 0.013157894736842105, 0.009868421052631578, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.006578947368421052, 0.07894736842105263], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gate.gap.json b/pfam_gap_rates/Gate.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e74e0cd2c44569281c58b9c54749187a53356bdf
--- /dev/null
+++ b/pfam_gap_rates/Gate.gap.json
@@ -0,0 +1 @@
+{"family": "Gate", "n_seqs": 5000, "length": 166, "gap_rates": [0.7818, 0.3602, 0.1782, 0.041, 0.023, 0.0176, 0.0138, 0.0098, 0.0086, 0.008, 0.0078, 0.0078, 0.0074, 0.007, 0.007, 0.0072, 0.007, 0.007, 0.0068, 0.0054, 0.7034, 0.7038, 0.7364, 0.7446, 0.7566, 0.8014, 0.8648, 0.9174, 0.939, 0.9418, 0.9442, 0.947, 0.948, 0.949, 0.9488, 0.9478, 0.9454, 0.9432, 0.9404, 0.9198, 0.898, 0.841, 0.7724, 0.7512, 0.7382, 0.7044, 0.7036, 0.7032, 0.0042, 0.004, 0.004, 0.0038, 0.0036, 0.0036, 0.0036, 0.0036, 0.0036, 0.0036, 0.0032, 0.003, 0.003, 0.003, 0.003, 0.003, 0.003, 0.8816, 0.0032, 0.0026, 0.8008, 0.7662, 0.7536, 0.5794, 0.0092, 0.0026, 0.0026, 0.0026, 0.0026, 0.0026, 0.002, 0.0018, 0.0018, 0.0024, 0.0024, 0.0024, 0.0024, 0.0026, 0.902, 0.3958, 0.393, 0.3864, 0.071, 0.0078, 0.0038, 0.0036, 0.0042, 0.0054, 0.021, 0.0162, 0.0202, 0.079, 0.7086, 0.7364, 0.7694, 0.7804, 0.8338, 0.8644, 0.8984, 0.9158, 0.9396, 0.9476, 0.943, 0.9266, 0.9076, 0.8942, 0.847, 0.806, 0.7742, 0.7636, 0.7142, 0.703, 0.627, 0.6276, 0.6146, 0.6062, 0.5964, 0.594, 0.5846, 0.4846, 0.4838, 0.0452, 0.02, 0.019, 0.0188, 0.0196, 0.0196, 0.0206, 0.092, 0.0908, 0.9476, 0.9318, 0.026, 0.0244, 0.0246, 0.0246, 0.0244, 0.027, 0.0278, 0.0322, 0.088, 0.0856, 0.2974, 0.0512, 0.0528, 0.0572, 0.061, 0.0696, 0.0752, 0.0814, 0.1282, 0.151, 0.2166, 0.2666, 0.333, 0.4192, 0.5842, 0.8912], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GcpE.gap.json b/pfam_gap_rates/GcpE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aded8f44e6505ccb50e753a6f62f09241f21269c
--- /dev/null
+++ b/pfam_gap_rates/GcpE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GldM_C.gap.json b/pfam_gap_rates/GldM_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a92cbf1ab2a18a190f43a920b146d1bc32553609
--- /dev/null
+++ b/pfam_gap_rates/GldM_C.gap.json
@@ -0,0 +1 @@
+{"family": "GldM_C", "n_seqs": 143, "length": 198, "gap_rates": [0.5244755244755245, 0.1048951048951049, 0.06993006993006994, 0.055944055944055944, 0.04195804195804196, 0.04195804195804196, 0.03496503496503497, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.7902097902097902, 0.8111888111888111, 0.7622377622377622, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.5944055944055944, 0.5384615384615384, 0.21678321678321677, 0.8461538461538461, 0.03496503496503497, 0.02097902097902098, 0.8881118881118881, 0.6573426573426573, 0.04195804195804196, 0.06293706293706294, 0.06993006993006994, 0.04195804195804196, 0.027972027972027972, 0.09090909090909091, 0.04895104895104895, 0.18181818181818182, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.7482517482517482, 0.5314685314685315, 0.5314685314685315, 0.04895104895104895, 0.055944055944055944, 0.2937062937062937, 0.3916083916083916, 0.35664335664335667, 0.32867132867132864, 0.3146853146853147, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.44755244755244755, 0.2867132867132867, 0.7902097902097902, 0.32867132867132864, 0.2867132867132867, 0.04895104895104895, 0.03496503496503497, 0.03496503496503497, 0.027972027972027972, 0.03496503496503497, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.03496503496503497, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.5174825174825175, 0.6643356643356644, 0.8111888111888111, 0.8531468531468531, 0.8251748251748252, 0.6713286713286714, 0.5314685314685315, 0.48951048951048953, 0.32867132867132864, 0.09090909090909091, 0.06993006993006994, 0.04895104895104895, 0.1258741258741259, 0.7902097902097902, 0.5524475524475524, 0.08391608391608392, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.027972027972027972, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.04895104895104895, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.03496503496503497, 0.027972027972027972, 0.02097902097902098, 0.7762237762237763, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.7062937062937062, 0.2727272727272727, 0.25874125874125875, 0.25874125874125875, 0.25874125874125875, 0.027972027972027972, 0.02097902097902098, 0.027972027972027972, 0.3006993006993007, 0.2867132867132867, 0.21678321678321677, 0.06293706293706294, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.03496503496503497, 0.03496503496503497, 0.027972027972027972, 0.02097902097902098, 0.027972027972027972, 0.027972027972027972, 0.02097902097902098, 0.027972027972027972, 0.04895104895104895, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.03496503496503497, 0.04895104895104895, 0.06993006993006994, 0.11188811188811189, 0.3356643356643357, 0.5594405594405595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gly-zipper_YMGG.gap.json b/pfam_gap_rates/Gly-zipper_YMGG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3aed82e8b6ab01826b68dbfae1a0c83cbc38af1
--- /dev/null
+++ b/pfam_gap_rates/Gly-zipper_YMGG.gap.json
@@ -0,0 +1 @@
+{"family": "Gly-zipper_YMGG", "n_seqs": 228, "length": 50, "gap_rates": [0.7850877192982456, 0.39035087719298245, 0.24561403508771928, 0.16666666666666666, 0.11842105263157894, 0.02631578947368421, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7105263157894737, 0.8947368421052632, 0.7894736842105263, 0.5877192982456141, 0.42543859649122806, 0.16228070175438597, 0.008771929824561403, 0.021929824561403508, 0.02631578947368421, 0.0043859649122807015, 0.0043859649122807015, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04824561403508772, 0.04824561403508772, 0.04824561403508772, 0.07456140350877193, 0.12280701754385964, 0.20175438596491227, 0.2894736842105263, 0.7675438596491229], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gly_radical.gap.json b/pfam_gap_rates/Gly_radical.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d7d87842583741a080d34e71719d7dfc1084970
--- /dev/null
+++ b/pfam_gap_rates/Gly_radical.gap.json
@@ -0,0 +1 @@
+{"family": "Gly_radical", "n_seqs": 1259, "length": 111, "gap_rates": [0.5837966640190627, 0.25178713264495634, 0.20413026211278792, 0.15885623510722796, 0.14455917394757745, 0.13820492454328834, 0.1374106433677522, 0.13502779984114377, 0.13343923749007147, 0.13502779984114377, 0.1318506751389992, 0.1254964257347101, 0.1254964257347101, 0.1254964257347101, 0.1254964257347101, 0.12152501985702939, 0.1199364575059571, 0.11199364575059571, 0.10405083399523431, 0.0937251787132645, 0.09213661636219221, 0.09213661636219221, 0.09213661636219221, 0.09134233518665608, 0.09054805401111994, 0.09054805401111994, 0.09054805401111994, 0.09054805401111994, 0.2176330420969023, 0.0937251787132645, 0.09134233518665608, 0.09134233518665608, 0.09134233518665608, 0.09134233518665608, 0.09134233518665608, 0.09134233518665608, 0.09054805401111994, 0.08895949166004766, 0.08816521048451152, 0.08816521048451152, 0.08737092930897537, 0.08657664813343924, 0.08657664813343924, 0.08737092930897537, 0.08737092930897537, 0.08816521048451152, 0.47180301826846704, 0.4614773629864972, 0.10325655281969817, 0.08260524225575853, 0.05480540111199365, 0.07069102462271644, 0.0698967434471803, 0.0698967434471803, 0.06910246227164417, 0.06830818109610802, 0.06751389992057188, 0.06751389992057188, 0.06751389992057188, 0.0659253375694996, 0.06354249404289118, 0.059571088165210485, 0.05798252581413821, 0.05321683876092136, 0.05321683876092136, 0.3431294678316124, 0.061953931691818905, 0.9062748212867355, 0.767275615567911, 0.06513105639396347, 0.06513105639396347, 0.0659253375694996, 0.0659253375694996, 0.0659253375694996, 0.06671961874503574, 0.06513105639396347, 0.06513105639396347, 0.06513105639396347, 0.06433677521842732, 0.06433677521842732, 0.06433677521842732, 0.06433677521842732, 0.06433677521842732, 0.06433677521842732, 0.06433677521842732, 0.06433677521842732, 0.06513105639396347, 0.06513105639396347, 0.06513105639396347, 0.0659253375694996, 0.06671961874503574, 0.06671961874503574, 0.06751389992057188, 0.9118347895154885, 0.9118347895154885, 0.07466243050039714, 0.07545671167593328, 0.07545671167593328, 0.06910246227164417, 0.06910246227164417, 0.06910246227164417, 0.06910246227164417, 0.06910246227164417, 0.0698967434471803, 0.0698967434471803, 0.0698967434471803, 0.0698967434471803, 0.07148530579825259, 0.07386814932486101, 0.08260524225575853, 0.22716441620333597], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_108.gap.json b/pfam_gap_rates/Glyco_hydro_108.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c821f0668b67c4869e0b8c9ba57c22983603552
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_108.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_108", "n_seqs": 238, "length": 112, "gap_rates": [0.9495798319327731, 0.2857142857142857, 0.15126050420168066, 0.1092436974789916, 0.08823529411764706, 0.07563025210084033, 0.07142857142857142, 0.07142857142857142, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.07563025210084033, 0.058823529411764705, 0.058823529411764705, 0.0546218487394958, 0.0546218487394958, 0.0546218487394958, 0.0546218487394958, 0.06302521008403361, 0.046218487394957986, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.04201680672268908, 0.04201680672268908, 0.037815126050420166, 0.03361344537815126, 0.03361344537815126, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.1134453781512605, 0.11764705882352941, 0.1092436974789916, 0.13865546218487396, 0.29831932773109243, 0.31092436974789917, 0.3025210084033613, 0.2773109243697479, 0.5336134453781513, 0.5462184873949579, 0.8319327731092437, 0.8571428571428571, 0.8865546218487395, 0.9033613445378151, 0.9159663865546218, 0.9411764705882353, 0.9495798319327731, 0.9369747899159664, 0.9159663865546218, 0.8991596638655462, 0.8823529411764706, 0.8361344537815126, 0.592436974789916, 0.5336134453781513, 0.40336134453781514, 0.03361344537815126, 0.025210084033613446, 0.01680672268907563, 0.008403361344537815, 0.004201680672268907, 0.012605042016806723, 0.01680672268907563, 0.06302521008403361, 0.01680672268907563, 0.012605042016806723, 0.012605042016806723, 0.004201680672268907, 0.004201680672268907, 0.004201680672268907, 0.004201680672268907, 0.037815126050420166, 0.004201680672268907, 0.004201680672268907, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.8697478991596639, 0.8697478991596639, 0.6596638655462185, 0.01680672268907563, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.01680672268907563, 0.01680672268907563, 0.04201680672268908, 0.06302521008403361], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_11.gap.json b/pfam_gap_rates/Glyco_hydro_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1cacb997fb1bb2e377e647f001944857376a362a
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_11.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_11", "n_seqs": 306, "length": 199, "gap_rates": [0.5359477124183006, 0.3104575163398693, 0.1895424836601307, 0.0718954248366013, 0.05555555555555555, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.042483660130718956, 0.03594771241830065, 0.03594771241830065, 0.934640522875817, 0.21241830065359477, 0.03594771241830065, 0.03594771241830065, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.12745098039215685, 0.026143790849673203, 0.02287581699346405, 0.0196078431372549, 0.03594771241830065, 0.016339869281045753, 0.016339869281045753, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.934640522875817, 0.7777777777777778, 0.0196078431372549, 0.0196078431372549, 0.02287581699346405, 0.02287581699346405, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.029411764705882353, 0.029411764705882353, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.029411764705882353, 0.026143790849673203, 0.02287581699346405, 0.9444444444444444, 0.9477124183006536, 0.9444444444444444, 0.7581699346405228, 0.032679738562091505, 0.026143790849673203, 0.0196078431372549, 0.016339869281045753, 0.013071895424836602, 0.013071895424836602, 0.00980392156862745, 0.00980392156862745, 0.006535947712418301, 0.8856209150326797, 0.013071895424836602, 0.013071895424836602, 0.0196078431372549, 0.9183006535947712, 0.026143790849673203, 0.9281045751633987, 0.013071895424836602, 0.013071895424836602, 0.9477124183006536, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.016339869281045753, 0.016339869281045753, 0.0196078431372549, 0.0196078431372549, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.0196078431372549, 0.016339869281045753, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.02287581699346405, 0.0457516339869281, 0.029411764705882353, 0.032679738562091505, 0.02287581699346405, 0.02287581699346405, 0.19607843137254902, 0.9052287581699346, 0.8954248366013072, 0.23202614379084968, 0.016339869281045753, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.016339869281045753, 0.02287581699346405, 0.05555555555555555, 0.03594771241830065, 0.03594771241830065, 0.03594771241830065, 0.032679738562091505, 0.026143790849673203, 0.026143790849673203, 0.029411764705882353, 0.9281045751633987, 0.026143790849673203, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.02287581699346405, 0.0196078431372549, 0.02287581699346405, 0.02287581699346405, 0.026143790849673203, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.8398692810457516, 0.9379084967320261, 0.8496732026143791, 0.803921568627451, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.029411764705882353, 0.03594771241830065, 0.03594771241830065, 0.03594771241830065, 0.0392156862745098, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.0457516339869281, 0.05228758169934641, 0.05228758169934641, 0.05555555555555555, 0.869281045751634, 0.06535947712418301, 0.058823529411764705, 0.13725490196078433, 0.9248366013071896, 0.058823529411764705, 0.06209150326797386, 0.06209150326797386, 0.8921568627450981, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.0718954248366013, 0.0784313725490196, 0.09803921568627451, 0.10130718954248366, 0.11764705882352941, 0.12745098039215685, 0.16339869281045752, 0.20261437908496732, 0.45098039215686275], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_30.gap.json b/pfam_gap_rates/Glyco_hydro_30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5a659d415299ba22b661cb499daa931d46592ea
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_30.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Glyco_hydro_35.gap.json b/pfam_gap_rates/Glyco_hydro_35.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec822b5a5f36bf0f427469adbc1a1582e2ea06bd
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_35.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_36C.gap.json b/pfam_gap_rates/Glyco_hydro_36C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..653a31de8ef0dd879399c2c6c158b7de70c59122
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_36C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_4.gap.json b/pfam_gap_rates/Glyco_hydro_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d82f8255bc00846c489da92f8bb6697a408da30a
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_4.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_4", "n_seqs": 869, "length": 186, "gap_rates": [0.2474108170310702, 0.07825086306098965, 0.06214039125431531, 0.05293440736478711, 0.05063291139240506, 0.04948216340621404, 0.047180667433831994, 0.04602991944764097, 0.04602991944764097, 0.04833141542002301, 0.047180667433831994, 0.04602991944764097, 0.04833141542002301, 0.04833141542002301, 0.04372842347525892, 0.04142692750287687, 0.04027617951668585, 0.039125431530494824, 0.0379746835443038, 0.039125431530494824, 0.04142692750287687, 0.04027617951668585, 0.04257767548906789, 0.03682393555811277, 0.03682393555811277, 0.03682393555811277, 0.03452243958573072, 0.026467203682393557, 0.07019562715765247, 0.023014959723820484, 0.020713463751438434, 0.020713463751438434, 0.020713463751438434, 0.019562715765247412, 0.019562715765247412, 0.019562715765247412, 0.019562715765247412, 0.019562715765247412, 0.7640966628308401, 0.7640966628308401, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.02186421173762946, 0.020713463751438434, 0.020713463751438434, 0.018411967779056387, 0.018411967779056387, 0.018411967779056387, 0.019562715765247412, 0.023014959723820484, 0.023014959723820484, 0.026467203682393557, 0.02531645569620253, 0.024165707710011506, 0.023014959723820484, 0.024165707710011506, 0.02531645569620253, 0.026467203682393557, 0.023014959723820484, 0.02186421173762946, 0.019562715765247412, 0.019562715765247412, 0.02186421173762946, 0.023014959723820484, 0.023014959723820484, 0.02186421173762946, 0.023014959723820484, 0.023014959723820484, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.023014959723820484, 0.810126582278481, 0.023014959723820484, 0.023014959723820484, 0.023014959723820484, 0.02186421173762946, 0.023014959723820484, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.020713463751438434, 0.019562715765247412, 0.019562715765247412, 0.019562715765247412, 0.019562715765247412, 0.019562715765247412, 0.020713463751438434, 0.020713463751438434, 0.020713463751438434, 0.020713463751438434, 0.02186421173762946, 0.5891829689298044, 0.5880322209436134, 0.023014959723820484, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.023014959723820484, 0.023014959723820484, 0.023014959723820484, 0.023014959723820484, 0.02186421173762946, 0.02186421173762946, 0.023014959723820484, 0.023014959723820484, 0.023014959723820484, 0.023014959723820484, 0.023014959723820484, 0.024165707710011506, 0.024165707710011506, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.02531645569620253, 0.024165707710011506, 0.024165707710011506, 0.9459148446490219, 0.024165707710011506, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.020713463751438434, 0.020713463751438434, 0.020713463751438434, 0.020713463751438434, 0.019562715765247412, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.02186421173762946, 0.023014959723820484, 0.1518987341772152, 0.09896432681242807, 0.04487917146144994, 0.04142692750287687, 0.33256616800920596, 0.026467203682393557, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.026467203682393557, 0.02991944764096663, 0.0379746835443038, 0.047180667433831994, 0.05178365937859609, 0.0667433831990794, 0.07249712313003452, 0.09090909090909091, 0.11507479861910241, 0.13578826237054084, 0.17376294591484465, 0.22554660529344073, 0.3233601841196778, 0.567318757192175], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_45.gap.json b/pfam_gap_rates/Glyco_hydro_45.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5bed8af2a83786617a3c10a5d4ac2e97532e8436
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_45.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_53.gap.json b/pfam_gap_rates/Glyco_hydro_53.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7322da3e3e90105344dee0da5f0f7741265a3101
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_53.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_65N.gap.json b/pfam_gap_rates/Glyco_hydro_65N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ec9a7232da880fc106162cf6be107144f1df1e6
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_65N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_67N.gap.json b/pfam_gap_rates/Glyco_hydro_67N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf5cf8403fe004971393c2374fe7712374378916
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_67N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_7.gap.json b/pfam_gap_rates/Glyco_hydro_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52279b3b62a983ac908ef14d2efe4a568f53fb4b
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_79C.gap.json b/pfam_gap_rates/Glyco_hydro_79C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c5a2b87ebe3f0f80f9c7952164b4c740bb1a39d
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_79C.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_79C", "n_seqs": 276, "length": 137, "gap_rates": [0.22826086956521738, 0.03260869565217391, 0.025362318840579712, 0.025362318840579712, 0.025362318840579712, 0.8731884057971014, 0.9492753623188406, 0.7536231884057971, 0.025362318840579712, 0.018115942028985508, 0.010869565217391304, 0.014492753623188406, 0.010869565217391304, 0.014492753623188406, 0.007246376811594203, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.010869565217391304, 0.010869565217391304, 0.0036231884057971015, 0.014492753623188406, 0.036231884057971016, 0.028985507246376812, 0.03985507246376811, 0.06159420289855073, 0.427536231884058, 0.7210144927536232, 0.8260869565217391, 0.8695652173913043, 0.8804347826086957, 0.9057971014492754, 0.9057971014492754, 0.8913043478260869, 0.8804347826086957, 0.8623188405797102, 0.8007246376811594, 0.605072463768116, 0.036231884057971016, 0.025362318840579712, 0.014492753623188406, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.057971014492753624, 0.057971014492753624, 0.03260869565217391, 0.036231884057971016, 0.11594202898550725, 0.11956521739130435, 0.7282608695652174, 0.7934782608695652, 0.8369565217391305, 0.7717391304347826, 0.5579710144927537, 0.15217391304347827, 0.05434782608695652, 0.025362318840579712, 0.010869565217391304, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.9094202898550725, 0.0036231884057971015, 0.06884057971014493, 0.07246376811594203, 0.018115942028985508, 0.021739130434782608, 0.021739130434782608, 0.043478260869565216, 0.7753623188405797, 0.8913043478260869, 0.9202898550724637, 0.9166666666666666, 0.8913043478260869, 0.7318840579710145, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.08333333333333333, 0.20652173913043478, 0.15579710144927536, 0.14492753623188406, 0.036231884057971016, 0.07608695652173914, 0.16304347826086957, 0.17391304347826086, 0.15942028985507245, 0.14130434782608695, 0.5797101449275363, 0.6811594202898551, 0.8695652173913043, 0.9021739130434783, 0.8804347826086957, 0.8514492753623188, 0.6630434782608695, 0.5253623188405797, 0.04710144927536232, 0.028985507246376812, 0.025362318840579712, 0.028985507246376812, 0.036231884057971016, 0.03985507246376811, 0.03260869565217391, 0.07608695652173914, 0.18840579710144928, 0.07971014492753623, 0.043478260869565216, 0.18478260869565216, 0.2898550724637681, 0.27898550724637683, 0.03985507246376811, 0.03985507246376811, 0.03985507246376811, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.050724637681159424, 0.050724637681159424, 0.057971014492753624, 0.08333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_cc.gap.json b/pfam_gap_rates/Glyco_hydro_cc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d0981b1e03771f0a98c64502d2445039315d186
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_cc.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_trans_2_3.gap.json b/pfam_gap_rates/Glyco_trans_2_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..766460fce5e553353f7958b2cf631e9055fb4353
--- /dev/null
+++ b/pfam_gap_rates/Glyco_trans_2_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_20.gap.json b/pfam_gap_rates/Glyco_transf_20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74d6b726059a0dd253afc6ebab750a164cb4bbd6
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_20.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_49.gap.json b/pfam_gap_rates/Glyco_transf_49.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74b647f88c0ba99bfe35b4cea38cb031330a0f15
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_49.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyoxalase.gap.json b/pfam_gap_rates/Glyoxalase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfead35d8e93b02acbd482761453abdc6cb0d5fd
--- /dev/null
+++ b/pfam_gap_rates/Glyoxalase.gap.json
@@ -0,0 +1 @@
+{"family": "Glyoxalase", "n_seqs": 5000, "length": 164, "gap_rates": [0.7698, 0.4292, 0.3318, 0.2446, 0.1692, 0.1258, 0.933, 0.932, 0.066, 0.0546, 0.043, 0.0314, 0.0288, 0.026, 0.0246, 0.0238, 0.0232, 0.0222, 0.0216, 0.021, 0.0208, 0.0196, 0.019, 0.0874, 0.0168, 0.0162, 0.0166, 0.0172, 0.0168, 0.0176, 0.017, 0.0172, 0.0176, 0.0178, 0.663, 0.812, 0.875, 0.8992, 0.9114, 0.9218, 0.9312, 0.9438, 0.9472, 0.9404, 0.9256, 0.9166, 0.9064, 0.8856, 0.8312, 0.7772, 0.588, 0.5208, 0.4692, 0.3944, 0.9356, 0.9006, 0.3354, 0.269, 0.204, 0.0652, 0.0588, 0.0464, 0.0402, 0.0324, 0.028, 0.0264, 0.0252, 0.0244, 0.0254, 0.0264, 0.0236, 0.0234, 0.022, 0.024, 0.024, 0.0258, 0.0254, 0.0246, 0.0238, 0.0228, 0.0248, 0.0324, 0.0328, 0.0362, 0.0432, 0.0634, 0.7882, 0.791, 0.9452, 0.9396, 0.7758, 0.8236, 0.5264, 0.7274, 0.8402, 0.9428, 0.8822, 0.7942, 0.6654, 0.4446, 0.3682, 0.2956, 0.1898, 0.1308, 0.0804, 0.054, 0.0432, 0.0334, 0.039, 0.0398, 0.0336, 0.0302, 0.031, 0.0712, 0.043, 0.0398, 0.0268, 0.027, 0.027, 0.028, 0.0278, 0.0284, 0.029, 0.029, 0.0292, 0.063, 0.0492, 0.0414, 0.043, 0.0468, 0.05, 0.0944, 0.128, 0.109, 0.0924, 0.0832, 0.081, 0.0836, 0.0892, 0.0904, 0.0994, 0.3, 0.4068, 0.8862, 0.925, 0.9298, 0.946, 0.9486, 0.9414, 0.928, 0.9056, 0.8714, 0.527, 0.1124, 0.1114, 0.1112, 0.1132, 0.1158, 0.1186, 0.1252, 0.1362, 0.1548, 0.2696, 0.4338], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyoxalase_3.gap.json b/pfam_gap_rates/Glyoxalase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f0a4ce7c68a65ea913b4248e23b3b64a97307b7
--- /dev/null
+++ b/pfam_gap_rates/Glyoxalase_3.gap.json
@@ -0,0 +1 @@
+{"family": "Glyoxalase_3", "n_seqs": 493, "length": 246, "gap_rates": [0.17647058823529413, 0.07707910750507099, 0.060851926977687626, 0.05070993914807302, 0.036511156186612576, 0.032454361054766734, 0.030425963488843813, 0.028397565922920892, 0.028397565922920892, 0.7829614604462475, 0.7079107505070994, 0.028397565922920892, 0.028397565922920892, 0.028397565922920892, 0.028397565922920892, 0.038539553752535496, 0.030425963488843813, 0.030425963488843813, 0.034482758620689655, 0.028397565922920892, 0.4969574036511156, 0.05273833671399594, 0.04462474645030426, 0.07505070993914807, 0.058823529411764705, 0.028397565922920892, 0.028397565922920892, 0.034482758620689655, 0.036511156186612576, 0.02636916835699797, 0.02231237322515213, 0.02231237322515213, 0.02028397565922921, 0.02028397565922921, 0.02434077079107505, 0.02231237322515213, 0.23529411764705882, 0.056795131845841784, 0.030425963488843813, 0.018255578093306288, 0.02028397565922921, 0.018255578093306288, 0.018255578093306288, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyphos_transf.gap.json b/pfam_gap_rates/Glyphos_transf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d32cea5be99b640f1e81274f6c2bd7e4618633b1
--- /dev/null
+++ b/pfam_gap_rates/Glyphos_transf.gap.json
@@ -0,0 +1 @@
+{"family": "Glyphos_transf", "n_seqs": 1086, "length": 433, "gap_rates": [0.9355432780847146, 0.8683241252302025, 0.8176795580110497, 0.7633517495395948, 0.7246777163904236, 0.6813996316758748, 0.6187845303867403, 0.578268876611418, 0.5534069981583793, 0.5460405156537753, 0.47790055248618785, 0.43830570902394106, 0.4263351749539595, 0.4189686924493554, 0.4097605893186004, 0.4005524861878453, 0.39871086556169427, 0.39594843462246776, 0.39042357274401474, 0.39042357274401474, 0.4696132596685083, 0.4208103130755064, 0.3876611418047882, 0.3821362799263352, 0.3664825046040516, 0.35359116022099446, 0.34990791896869244, 0.34898710865561694, 0.34898710865561694, 0.34898710865561694, 0.34806629834254144, 0.34714548802946593, 0.3462246777163904, 0.3462246777163904, 0.3453038674033149, 0.3453038674033149, 0.3443830570902394, 0.860036832412523, 0.7955801104972375, 0.42357274401473294, 0.35911602209944754, 0.3443830570902394, 0.3397790055248619, 0.3388581952117864, 0.3370165745856354, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Gmad2.gap.json b/pfam_gap_rates/Gmad2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6eae020d6be736453b34714ec0065d879f8aa5d0
--- /dev/null
+++ b/pfam_gap_rates/Gmad2.gap.json
@@ -0,0 +1 @@
+{"family": "Gmad2", "n_seqs": 244, "length": 95, "gap_rates": [0.8278688524590164, 0.26229508196721313, 0.18442622950819673, 0.15163934426229508, 0.14344262295081966, 0.14344262295081966, 0.13524590163934427, 0.11065573770491803, 0.0860655737704918, 0.0860655737704918, 0.0778688524590164, 0.07377049180327869, 0.06967213114754098, 0.06557377049180328, 0.930327868852459, 0.040983606557377046, 0.01639344262295082, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.0, 0.5819672131147541, 0.5983606557377049, 0.5409836065573771, 0.0, 0.0, 0.004098360655737705, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.0, 0.05327868852459016, 0.03278688524590164, 0.9467213114754098, 0.028688524590163935, 0.020491803278688523, 0.004098360655737705, 0.0, 0.0, 0.012295081967213115, 0.00819672131147541, 0.004098360655737705, 0.03278688524590164, 0.5860655737704918, 0.45491803278688525, 0.08196721311475409, 0.036885245901639344, 0.012295081967213115, 0.00819672131147541, 0.004098360655737705, 0.00819672131147541, 0.004098360655737705, 0.004098360655737705, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.01639344262295082, 0.01639344262295082, 0.0860655737704918, 0.11885245901639344, 0.11885245901639344, 0.7049180327868853, 0.06557377049180328, 0.9385245901639344, 0.0778688524590164, 0.0860655737704918, 0.0860655737704918, 0.0860655737704918, 0.09016393442622951, 0.11065573770491803, 0.11885245901639344, 0.13934426229508196, 0.1721311475409836, 0.18442622950819673, 0.22950819672131148, 0.25, 0.3114754098360656, 0.48360655737704916, 0.569672131147541, 0.6475409836065574], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GoLoco.gap.json b/pfam_gap_rates/GoLoco.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76eb336b4a06589e653c3f768c0c056655d3c987
--- /dev/null
+++ b/pfam_gap_rates/GoLoco.gap.json
@@ -0,0 +1 @@
+{"family": "GoLoco", "n_seqs": 466, "length": 22, "gap_rates": [0.12446351931330472, 0.0407725321888412, 0.019313304721030045, 0.017167381974248927, 0.008583690987124463, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006437768240343348, 0.12660944206008584, 0.45278969957081544], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gpi1.gap.json b/pfam_gap_rates/Gpi1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e4f3db47aaaa455feee2977f05c5d701f4249bd
--- /dev/null
+++ b/pfam_gap_rates/Gpi1.gap.json
@@ -0,0 +1 @@
+{"family": "Gpi1", "n_seqs": 321, "length": 198, "gap_rates": [0.6292834890965732, 0.4766355140186916, 0.367601246105919, 0.3052959501557632, 0.2772585669781931, 0.2523364485981308, 0.9003115264797508, 0.24610591900311526, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.22741433021806853, 0.22429906542056074, 0.22429906542056074, 0.22429906542056074, 0.22118380062305296, 0.22118380062305296, 0.22118380062305296, 0.22118380062305296, 0.22118380062305296, 0.22429906542056074, 0.22118380062305296, 0.22118380062305296, 0.3333333333333333, 0.2367601246105919, 0.21806853582554517, 0.20249221183800623, 0.19626168224299065, 0.19626168224299065, 0.18691588785046728, 0.18691588785046728, 0.19003115264797507, 0.2336448598130841, 0.9345794392523364, 0.8629283489096573, 0.21495327102803738, 0.1838006230529595, 0.16199376947040497, 0.17133956386292834, 0.1526479750778816, 0.14953271028037382, 0.13707165109034267, 0.14330218068535824, 0.13395638629283488, 0.1308411214953271, 0.1308411214953271, 0.1308411214953271, 0.1277258566978193, 0.12461059190031153, 0.1277258566978193, 0.1277258566978193, 0.1277258566978193, 0.1277258566978193, 0.9252336448598131, 0.1277258566978193, 0.1277258566978193, 0.1308411214953271, 0.1308411214953271, 0.1277258566978193, 0.1277258566978193, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12149532710280374, 0.12149532710280374, 0.12149532710280374, 0.11838006230529595, 0.11838006230529595, 0.11838006230529595, 0.11838006230529595, 0.11838006230529595, 0.11214953271028037, 0.1059190031152648, 0.10903426791277258, 0.10903426791277258, 0.1059190031152648, 0.102803738317757, 0.10903426791277258, 0.8940809968847352, 0.11214953271028037, 0.11838006230529595, 0.12149532710280374, 0.12461059190031153, 0.1308411214953271, 0.13395638629283488, 0.9345794392523364, 0.8785046728971962, 0.14330218068535824, 0.14641744548286603, 0.14641744548286603, 0.17133956386292834, 0.16822429906542055, 0.1557632398753894, 0.14018691588785046, 0.9470404984423676, 0.9439252336448598, 0.14330218068535824, 0.14018691588785046, 0.13395638629283488, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.14330218068535824, 0.13707165109034267, 0.1308411214953271, 0.7912772585669782, 0.1308411214953271, 0.1308411214953271, 0.1308411214953271, 0.13395638629283488, 0.1308411214953271, 0.1308411214953271, 0.1277258566978193, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12149532710280374, 0.11838006230529595, 0.11838006230529595, 0.11526479750778816, 0.11526479750778816, 0.11838006230529595, 0.11526479750778816, 0.11838006230529595, 0.11526479750778816, 0.11526479750778816, 0.10903426791277258, 0.10903426791277258, 0.102803738317757, 0.09345794392523364, 0.09345794392523364, 0.102803738317757, 0.1059190031152648, 0.11526479750778816, 0.11214953271028037, 0.11214953271028037, 0.1059190031152648, 0.1059190031152648, 0.1059190031152648, 0.102803738317757, 0.09968847352024922, 0.09968847352024922, 0.09968847352024922, 0.09968847352024922, 0.09968847352024922, 0.09968847352024922, 0.09968847352024922, 0.09968847352024922, 0.102803738317757, 0.11214953271028037, 0.11214953271028037, 0.11526479750778816, 0.12461059190031153, 0.1277258566978193, 0.1277258566978193, 0.12461059190031153, 0.12461059190031153, 0.12149532710280374, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12149532710280374, 0.12149532710280374, 0.12149532710280374, 0.9470404984423676, 0.12461059190031153, 0.13395638629283488, 0.13395638629283488, 0.13395638629283488, 0.13707165109034267, 0.13707165109034267, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.14641744548286603, 0.14953271028037382, 0.1557632398753894, 0.16199376947040497, 0.16199376947040497, 0.16199376947040497, 0.16510903426791276, 0.16199376947040497, 0.16199376947040497, 0.16510903426791276, 0.17133956386292834, 0.17757009345794392, 0.1838006230529595, 0.2772585669781931], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Grp1_Fun34_YaaH.gap.json b/pfam_gap_rates/Grp1_Fun34_YaaH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bc349ebc1346bbe51f5fd63c5ada65665b515a7
--- /dev/null
+++ b/pfam_gap_rates/Grp1_Fun34_YaaH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Guanylate_cyc_2.gap.json b/pfam_gap_rates/Guanylate_cyc_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..97e4657c75123982444898227bd9c522dbeab85e
--- /dev/null
+++ b/pfam_gap_rates/Guanylate_cyc_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GyrI-like.gap.json b/pfam_gap_rates/GyrI-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18478c8d2f464f4a410e5b9bf87c228fda92382f
--- /dev/null
+++ b/pfam_gap_rates/GyrI-like.gap.json
@@ -0,0 +1 @@
+{"family": "GyrI-like", "n_seqs": 1721, "length": 200, "gap_rates": [0.757699012202208, 0.463102847181871, 0.28471818710052293, 0.23300406740267288, 0.21092388146426497, 0.19000581057524696, 0.17838466008134804, 0.16792562463683905, 0.16269610691458455, 0.1557234166182452, 0.15223707147007554, 0.14875072632190586, 0.14584543869843114, 0.14584543869843114, 0.14410226612434632, 0.14294015107495642, 0.14235909355026147, 0.14177803602556652, 0.14061592097617664, 0.1388727484020918, 0.13654851830331202, 0.13248111563044743, 0.1336432306798373, 0.1336432306798373, 0.3166763509587449, 0.42940151074956423, 0.5212085996513655, 0.7832655432887856, 0.8099941894247531, 0.6165020337013364, 0.13596746077861707, 0.12027890761185357, 0.11621150493898896, 0.11911679256246369, 0.11330621731551424, 0.11098198721673445, 0.10923881464264962, 0.10807669959325973, 0.10865775711795468, 0.10691458454386985, 0.10575246949447996, 0.10691458454386985, 0.10342823939570017, 0.10342823939570017, 0.10691458454386985, 0.10691458454386985, 0.12376525276002324, 0.23242300987797793, 0.33643230679837305, 0.610691458454387, 0.737361998837885, 0.8128994770482277, 0.8489250435793143, 0.9093550261475886, 0.9180708890180128, 0.9128413712957583, 0.8971528181289947, 0.8262638001162115, 0.7937245787332946, 0.642068564787914, 0.5241138872748402, 0.1231841952353283, 0.10749564206856478, 0.09238814642649622, 0.0906449738524114, 0.0894828588030215, 0.08599651365485184, 0.08483439860546194, 0.08251016850668216, 0.08076699593259733, 0.08192911098198721, 0.084253341080767, 0.1504938988959907, 0.28994770482277743, 0.38059267867518887, 0.905287623474724, 0.8204532248692621, 0.27658338175479374, 0.16966879721092387, 0.09238814642649622, 0.07495642068564788, 0.06624055781522371, 0.06565950029052876, 0.06391632771644393, 0.05752469494479954, 0.0557815223707147, 0.056362579895409645, 0.05345729227193492, 0.04997094712376525, 0.04880883207437536, 0.04997094712376525, 0.051714119697850086, 0.05752469494479954, 0.10807669959325973, 0.2515979081929111, 0.2975014526438117, 0.715281812899477, 0.7716443927948867, 0.7954677513073795, 0.8094131319000581, 0.8163858221963974, 0.821034282393957, 0.8239395700174317, 0.8256827425915165, 0.8309122603137711, 0.84253341080767, 0.894828588030215, 0.8442765833817548, 0.8402091807088902, 0.8262638001162115, 0.8251016850668216, 0.8227774549680419, 0.8198721673445671, 0.8128994770482277, 0.8070889018012783, 0.7855897733875654, 0.7559558396281232, 0.6281231841952353, 0.05752469494479954, 0.04938988959907031, 0.044160371876815804, 0.03544450900639163, 0.031958163858221963, 0.02905287623474724, 0.026147588611272515, 0.02266124346310285, 0.02033701336432307, 0.016269610691458453, 0.0168506682161534, 0.015107495642068565, 0.01568855316676351, 0.01452643811737362, 0.01336432306798373, 0.01220220801859384, 0.013945380592678676, 0.012783265543288786, 0.012783265543288786, 0.011621150493898896, 0.011621150493898896, 0.023823358512492735, 0.02440441603718768, 0.019755955839628123, 0.03602556653108658, 0.8175479372457873, 0.026147588611272515, 0.023242300987797792, 0.01568855316676351, 0.016269610691458453, 0.015107495642068565, 0.01452643811737362, 0.01452643811737362, 0.01452643811737362, 0.013945380592678676, 0.013945380592678676, 0.013945380592678676, 0.015107495642068565, 0.5450319581638582, 0.01801278326554329, 0.017431725740848343, 0.0168506682161534, 0.015107495642068565, 0.0168506682161534, 0.02440441603718768, 0.02149912841371296, 0.9006391632771644, 0.9151656013945381, 0.8582219639744335, 0.40906449738524114, 0.061011040092969204, 0.028471818710052294, 0.03137710633352702, 0.03021499128413713, 0.03312027890761186, 0.04706565950029053, 0.041836141778036025, 0.03312027890761186, 0.03428239395700174, 0.0337013364323068, 0.0389308541545613, 0.04067402672864614, 0.046484601975595584, 0.10865775711795468, 0.1452643811737362, 0.3991865194654271, 0.768739105171412, 0.47298082510168504, 0.09180708890180128, 0.073794305636258, 0.06914584543869844, 0.07030796048808832, 0.06798373038930854, 0.07030796048808832, 0.07669959325973272, 0.08251016850668216, 0.08076699593259733, 0.09122603137710633, 0.1063335270191749, 0.1336432306798373, 0.19755955839628123, 0.725740848343986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HA.gap.json b/pfam_gap_rates/HA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbfdd013c1670cb215b4d3891092167a1eb62203
--- /dev/null
+++ b/pfam_gap_rates/HA.gap.json
@@ -0,0 +1 @@
+{"family": "HA", "n_seqs": 1131, "length": 84, "gap_rates": [0.5782493368700266, 0.2625994694960212, 0.09195402298850575, 0.05305039787798409, 0.046861184792219276, 0.03183023872679045, 0.022104332449160036, 0.01856763925729443, 0.01768346595932803, 0.016799292661361626, 0.015915119363395226, 0.01237842617152962, 0.01237842617152962, 0.010610079575596816, 0.008841732979664015, 0.007957559681697613, 0.007957559681697613, 0.008841732979664015, 0.007073386383731211, 0.03183023872679045, 0.029177718832891247, 0.015915119363395226, 0.04332449160035367, 0.015915119363395226, 0.627763041556145, 0.8222811671087533, 0.8488063660477454, 0.8726790450928382, 0.8938992042440318, 0.9230769230769231, 0.8983200707338639, 0.8770999115826702, 0.8647214854111406, 0.8355437665782494, 0.7957559681697612, 0.5172413793103449, 0.2661361626878868, 0.2926613616268789, 0.25552608311229, 0.05128205128205128, 0.040671971706454466, 0.005305039787798408, 0.005305039787798408, 0.0035366931918656055, 0.0035366931918656055, 0.005305039787798408, 0.00618921308576481, 0.007073386383731211, 0.010610079575596816, 0.011494252873563218, 0.013262599469496022, 0.015915119363395226, 0.015030946065428824, 0.016799292661361626, 0.016799292661361626, 0.01768346595932803, 0.21131741821396993, 0.1892130857648099, 0.10610079575596817, 0.03183023872679045, 0.7020335985853228, 0.7559681697612732, 0.8081343943412909, 0.9106984969053935, 0.9451812555260831, 0.9248452696728559, 0.8885941644562334, 0.7939876215738285, 0.726790450928382, 0.6808134394341291, 0.026525198938992044, 0.032714412024756855, 0.03183023872679045, 0.032714412024756855, 0.03183023872679045, 0.03713527851458886, 0.03801945181255526, 0.04155614500442087, 0.04155614500442087, 0.04509283819628647, 0.053934571175950484, 0.0645446507515473, 0.12643678160919541, 0.28116710875331563], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HA2.gap.json b/pfam_gap_rates/HA2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b05df8dec2e3b8c5dabb5ff49e165f6cdca74133
--- /dev/null
+++ b/pfam_gap_rates/HA2.gap.json
@@ -0,0 +1 @@
+{"family": "HA2", "n_seqs": 4642, "length": 131, "gap_rates": [0.3123653597587247, 0.22124084446359327, 0.12580784144765186, 0.03726841878500646, 0.030805687203791468, 0.02972856527358897, 0.028220594571305473, 0.025850926324859975, 0.024558380008616976, 0.024558380008616976, 0.022619560534252476, 0.8614821197759587, 0.8946574752261957, 0.9330030159414046, 0.943127962085308, 0.9110297285652736, 0.8709607927617407, 0.8606204222317967, 0.02132701421800948, 0.06721240844463593, 0.03188280913399397, 0.9493752692804825, 0.025850926324859975, 0.011632916846186989, 0.01055579491598449, 0.01034037052994399, 0.9472210254200776, 0.00990952175786299, 0.00969409737182249, 0.00969409737182249, 0.00904782421370099, 0.007755277897457992, 0.005385609651012494, 0.005170185264971995, 0.004954760878931495, 0.003231365790607497, 0.003231365790607497, 0.003231365790607497, 0.002369668246445498, 0.0025850926324859974, 0.002154243860404998, 0.0017233950883239983, 0.002369668246445498, 0.002369668246445498, 0.0015079707022834985, 0.001938819474364498, 0.002154243860404998, 0.0028005170185264974, 0.003015941404566997, 0.028005170185264973, 0.023050409306333477, 0.022619560534252476, 0.020249892287806978, 0.9467901766479966, 0.01960361912968548, 0.007970702283498492, 0.007970702283498492, 0.00840155105557949, 0.008832399827660492, 0.008616975441619991, 0.01034037052994399, 0.010771219302024989, 0.012494614390348987, 0.013356311934510987, 0.015295131408875486, 0.016372253339077984, 0.01831107281344248, 0.06527358897027144, 0.8922878069797501, 0.046962516156828955, 0.05428694528220594, 0.057518311072813445, 0.06311934510986644, 0.06548901335631194, 0.06850495476087894, 0.07216716932356743, 0.07884532529082292, 0.16156828953037483, 0.2718655751831107, 0.3892718655751831, 0.5198190435157259, 0.5758293838862559, 0.6322705730288669, 0.6813873330461008, 0.7210254200775528, 0.8528651443343387, 0.8595433003015941, 0.8716070659198621, 0.8869021973287377, 0.9088754847048686, 0.91813873330461, 0.9293408013787161, 0.944851357173632, 0.9407582938388626, 0.9230934941835416, 0.9133993968117191, 0.9015510555794916, 0.8778543731150367, 0.8653597587246876, 0.8543731150366222, 0.8498492029297716, 0.7811288237828522, 0.8614821197759587, 0.8470486859112452, 0.8285221887117622, 0.8082722964239551, 0.7438604049978458, 0.6370099095217578, 0.5277897457992244, 0.4386040499784576, 0.4041361482119776, 0.39638087031451963, 0.4009047824213701, 0.4039207238259371, 0.44097371822490306, 0.4177078845325291, 0.4030590262817751, 0.3948728996122361, 0.3890564411891426, 0.3871176217147781, 0.38410168031021114, 0.37613097802671264, 0.35932787591555365, 0.9390348987505386, 0.8728996122361051, 0.32722964239551916, 0.3300301594140457, 0.34252477380439467, 0.3612666953899181, 0.4228780697975011, 0.6152520465316674], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HAP1_N.gap.json b/pfam_gap_rates/HAP1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c66fb3dddba74c046202c8d1c92e82dfbf23839
--- /dev/null
+++ b/pfam_gap_rates/HAP1_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HATPase_c.gap.json b/pfam_gap_rates/HATPase_c.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a20b568908444a5a549191e0f0ebb68ef041f513
--- /dev/null
+++ b/pfam_gap_rates/HATPase_c.gap.json
@@ -0,0 +1 @@
+{"family": "HATPase_c", "n_seqs": 5000, "length": 169, "gap_rates": [0.7892, 0.4398, 0.339, 0.2228, 0.1468, 0.0884, 0.0674, 0.0508, 0.0276, 0.0152, 0.0124, 0.011, 0.0104, 0.0096, 0.0096, 0.0092, 0.0092, 0.0092, 0.0086, 0.7984, 0.8882, 0.9222, 0.9484, 0.9286, 0.905, 0.8262, 0.6978, 0.0234, 0.0274, 0.9022, 0.9322, 0.6214, 0.0578, 0.0166, 0.011, 0.012, 0.0094, 0.0092, 0.0076, 0.0072, 0.011, 0.0146, 0.094, 0.1106, 0.6902, 0.8102, 0.8714, 0.8994, 0.916, 0.931, 0.95, 0.9424, 0.9254, 0.9082, 0.8878, 0.839, 0.7806, 0.6216, 0.09, 0.0778, 0.0068, 0.9172, 0.936, 0.9034, 0.0046, 0.0038, 0.0032, 0.0032, 0.0028, 0.0026, 0.0028, 0.0074, 0.0062, 0.0068, 0.0054, 0.0038, 0.0038, 0.005, 0.017, 0.017, 0.0192, 0.0198, 0.8786, 0.8834, 0.8884, 0.9074, 0.9142, 0.9156, 0.924, 0.9176, 0.9152, 0.9138, 0.891, 0.8882, 0.8806, 0.8696, 0.0826, 0.0788, 0.0754, 0.0706, 0.882, 0.0624, 0.0622, 0.058, 0.0534, 0.9232, 0.9424, 0.6238, 0.5632, 0.3884, 0.357, 0.234, 0.2056, 0.1154, 0.0914, 0.0682, 0.05, 0.026, 0.0216, 0.0198, 0.0172, 0.0156, 0.0154, 0.0152, 0.015, 0.015, 0.0158, 0.0182, 0.9232, 0.0186, 0.0194, 0.0202, 0.95, 0.0498, 0.0236, 0.0284, 0.032, 0.028, 0.0276, 0.0272, 0.0248, 0.921, 0.938, 0.9444, 0.9464, 0.9486, 0.9478, 0.9454, 0.9418, 0.9344, 0.9112, 0.0616, 0.0624, 0.0648, 0.0576, 0.9138, 0.1182, 0.07, 0.0546, 0.0554, 0.0568, 0.0582, 0.062, 0.068, 0.0854, 0.1078, 0.1766, 0.3746, 0.7386], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HEAT.gap.json b/pfam_gap_rates/HEAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a407834ad41f3c1050dfbfd27aaa2c22a4e44dda
--- /dev/null
+++ b/pfam_gap_rates/HEAT.gap.json
@@ -0,0 +1 @@
+{"family": "HEAT", "n_seqs": 1488, "length": 31, "gap_rates": [0.4099462365591398, 0.2506720430107527, 0.15591397849462366, 0.09946236559139784, 0.02956989247311828, 0.016801075268817203, 0.009408602150537635, 0.009408602150537635, 0.004704301075268817, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006720430107526882, 0.0013440860215053765, 0.006048387096774193, 0.016129032258064516, 0.04032258064516129, 0.09811827956989247, 0.21169354838709678, 0.5114247311827957, 0.8850806451612904], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HGTP_anticodon2.gap.json b/pfam_gap_rates/HGTP_anticodon2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9a2fa0aef4fee70999bc35340979cc810659037
--- /dev/null
+++ b/pfam_gap_rates/HGTP_anticodon2.gap.json
@@ -0,0 +1 @@
+{"family": "HGTP_anticodon2", "n_seqs": 207, "length": 303, "gap_rates": [0.4830917874396135, 0.47342995169082125, 0.41545893719806765, 0.357487922705314, 0.30434782608695654, 0.1932367149758454, 0.1111111111111111, 0.07729468599033816, 0.07729468599033816, 0.07729468599033816, 0.07729468599033816, 0.07246376811594203, 0.06763285024154589, 0.07246376811594203, 0.06763285024154589, 0.07246376811594203, 0.07729468599033816, 0.07246376811594203, 0.4251207729468599, 0.07246376811594203, 0.057971014492753624, 0.057971014492753624, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.05314009661835749, 0.1642512077294686, 0.06763285024154589, 0.06280193236714976, 0.8695652173913043, 0.9227053140096618, 0.8647342995169082, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HHH_5.gap.json b/pfam_gap_rates/HHH_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4dbde8d2de0982a1f4c9c13d92ed24da354d6b9c
--- /dev/null
+++ b/pfam_gap_rates/HHH_5.gap.json
@@ -0,0 +1 @@
+{"family": "HHH_5", "n_seqs": 5000, "length": 65, "gap_rates": [0.7006, 0.5264, 0.3554, 0.211, 0.1704, 0.1282, 0.071, 0.0526, 0.0354, 0.0322, 0.0304, 0.0272, 0.0228, 0.017, 0.0134, 0.0104, 0.009, 0.0044, 0.0044, 0.006, 0.0054, 0.8148, 0.42, 0.8162, 0.1754, 0.0038, 0.0058, 0.9396, 0.0034, 0.0218, 0.912, 0.002, 0.0028, 0.0008, 0.001, 0.0032, 0.8994, 0.9074, 0.9052, 0.8796, 0.0016, 0.002, 0.002, 0.0022, 0.0022, 0.0042, 0.0064, 0.0088, 0.057, 0.0356, 0.0202, 0.0212, 0.0218, 0.023, 0.0238, 0.0258, 0.029, 0.034, 0.0376, 0.0646, 0.1188, 0.1804, 0.2504, 0.4226, 0.719], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HHH_8.gap.json b/pfam_gap_rates/HHH_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01677f377153ef58ea7187b5c3405e73400e34c8
--- /dev/null
+++ b/pfam_gap_rates/HHH_8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HMG-CoA_red.gap.json b/pfam_gap_rates/HMG-CoA_red.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9477bc9e2c9d6481f938658578710234372184b6
--- /dev/null
+++ b/pfam_gap_rates/HMG-CoA_red.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HMG_box.gap.json b/pfam_gap_rates/HMG_box.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb10e0eeee7b1a2b056f693db59864a9635dbc78
--- /dev/null
+++ b/pfam_gap_rates/HMG_box.gap.json
@@ -0,0 +1 @@
+{"family": "HMG_box", "n_seqs": 4856, "length": 70, "gap_rates": [0.29365733113673803, 0.15733113673805602, 0.12602965403624383, 0.10790774299835255, 0.0792833607907743, 0.06466227347611203, 0.05724876441515651, 0.05333607907742998, 0.04942339373970346, 0.04612850082372323, 0.04427512355848435, 0.042627677100494234, 0.04098023064250412, 0.039538714991762765, 0.03830313014827018, 0.039126853377265236, 0.04015650741350906, 0.041803953871499176, 0.0457166392092257, 0.0457166392092257, 0.04118616144975288, 0.045922570016474464, 0.054777594728171335, 0.0636326194398682, 0.0457166392092257, 0.038509060955518946, 0.029654036243822075, 0.895181219110379, 0.022446457990115323, 0.017915980230642503, 0.01729818780889621, 0.017504118616144974, 0.011943986820428337, 0.01029654036243822, 0.009472817133443162, 0.006589785831960461, 0.006589785831960461, 0.007825370675453048, 0.010090609555189456, 0.011738056013179572, 0.011738056013179572, 0.012973640856672158, 0.013385502471169687, 0.038509060955518946, 0.04098023064250412, 0.018533772652388796, 0.02059308072487644, 0.021210873146622736, 0.025947281713344317, 0.029242174629324547, 0.030477759472817133, 0.032331136738056016, 0.03439044481054366, 0.03830313014827018, 0.04242174629324547, 0.048393739703459636, 0.05621911037891269, 0.06569192751235585, 0.07434102141680396, 0.08196046128500824, 0.09390444810543658, 0.10893739703459637, 0.11573311367380561, 0.12417627677100494, 0.14394563426688634, 0.16824546952224054, 0.19069192751235584, 0.2343492586490939, 0.2592668863261944, 0.4866144975288303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HS1_rep.gap.json b/pfam_gap_rates/HS1_rep.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bfd3e4a0d7e007941b2b490d0c82b28c6740f1af
--- /dev/null
+++ b/pfam_gap_rates/HS1_rep.gap.json
@@ -0,0 +1 @@
+{"family": "HS1_rep", "n_seqs": 539, "length": 36, "gap_rates": [0.02411873840445269, 0.01855287569573284, 0.016697588126159554, 0.016697588126159554, 0.014842300556586271, 0.014842300556586271, 0.012987012987012988, 0.011131725417439703, 0.011131725417439703, 0.011131725417439703, 0.02411873840445269, 0.00927643784786642, 0.00927643784786642, 0.00927643784786642, 0.0055658627087198514, 0.014842300556586271, 0.01855287569573284, 0.02040816326530612, 0.022263450834879406, 0.022263450834879406, 0.022263450834879406, 0.022263450834879406, 0.029684601113172542, 0.03896103896103896, 0.061224489795918366, 0.08163265306122448, 0.10946196660482375, 0.13172541743970315, 0.13543599257884972, 0.13543599257884972, 0.1391465677179963, 0.1391465677179963, 0.15398886827458255, 0.18552875695732837, 0.20037105751391465, 0.4935064935064935], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HSDR_N_2.gap.json b/pfam_gap_rates/HSDR_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff77bbb5afcdff8d091e300a9f16e2014b520b39
--- /dev/null
+++ b/pfam_gap_rates/HSDR_N_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HSNSD.gap.json b/pfam_gap_rates/HSNSD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48c6bbad6837dcc6c027d54f00235a8dde13db73
--- /dev/null
+++ b/pfam_gap_rates/HSNSD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HSP20.gap.json b/pfam_gap_rates/HSP20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2445aa39ba01df1efbbf5db68b6df3d65f0ac128
--- /dev/null
+++ b/pfam_gap_rates/HSP20.gap.json
@@ -0,0 +1 @@
+{"family": "HSP20", "n_seqs": 5000, "length": 109, "gap_rates": [0.6678, 0.4336, 0.334, 0.2442, 0.168, 0.1332, 0.1108, 0.098, 0.0928, 0.0866, 0.082, 0.0786, 0.0724, 0.0714, 0.0688, 0.0652, 0.0628, 0.0612, 0.06, 0.0582, 0.0564, 0.0556, 0.055, 0.0544, 0.0544, 0.0538, 0.052, 0.0498, 0.0478, 0.0458, 0.0444, 0.8842, 0.0422, 0.0414, 0.0412, 0.0396, 0.0358, 0.0342, 0.0324, 0.029, 0.505, 0.8536, 0.9338, 0.7982, 0.4254, 0.279, 0.1402, 0.0732, 0.0606, 0.0518, 0.0502, 0.0514, 0.05, 0.0528, 0.058, 0.08, 0.256, 0.2412, 0.2254, 0.2004, 0.0574, 0.0356, 0.0244, 0.0228, 0.0206, 0.0204, 0.0198, 0.02, 0.0204, 0.1176, 0.088, 0.0826, 0.0242, 0.0292, 0.0328, 0.0324, 0.0332, 0.0356, 0.0308, 0.026, 0.026, 0.0278, 0.7904, 0.0292, 0.03, 0.032, 0.0332, 0.0338, 0.0336, 0.0338, 0.036, 0.0406, 0.0442, 0.054, 0.0714, 0.091, 0.1096, 0.1274, 0.4558, 0.3894, 0.8344, 0.2378, 0.236, 0.2448, 0.2602, 0.2686, 0.2992, 0.3216, 0.8044], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_21.gap.json b/pfam_gap_rates/HTH_21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57ac8120ead1a37be0e79586ee0a25bebb26e97d
--- /dev/null
+++ b/pfam_gap_rates/HTH_21.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_21", "n_seqs": 2695, "length": 60, "gap_rates": [0.9235621521335807, 0.6293135435992578, 0.4805194805194805, 0.3410018552875696, 0.9064935064935065, 0.2, 0.15324675324675324, 0.12282003710575139, 0.10055658627087198, 0.08608534322820037, 0.07606679035250463, 0.06493506493506493, 0.05862708719851577, 0.05009276437847866, 0.04972170686456401, 0.043042671614100185, 0.03970315398886828, 0.31539888682745826, 0.052319109461966606, 0.019294990723562153, 0.01595547309833024, 0.011131725417439703, 0.010760667903525046, 0.01038961038961039, 0.009647495361781076, 0.006307977736549165, 0.005936920222634508, 0.005936920222634508, 0.003339517625231911, 0.003339517625231911, 0.003339517625231911, 0.003339517625231911, 0.0044526901669758815, 0.33246753246753247, 0.06382189239332096, 0.24007421150278294, 0.18515769944341373, 0.004081632653061225, 0.004081632653061225, 0.004081632653061225, 0.004081632653061225, 0.004081632653061225, 0.005936920222634508, 0.007050092764378479, 0.008905380333951763, 0.00927643784786642, 0.010760667903525046, 0.011873840445269016, 0.014471243042671614, 0.017068645640074213, 0.019666048237476808, 0.021150278293135438, 0.03191094619666048, 0.03710575139146568, 0.062708719851577, 0.11910946196660482, 0.17217068645640074, 0.25009276437847866, 0.41706864564007423, 0.7087198515769945], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_3.gap.json b/pfam_gap_rates/HTH_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a956e9354512ef5a8056767bdbc02efea2e20d30
--- /dev/null
+++ b/pfam_gap_rates/HTH_3.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_3", "n_seqs": 5000, "length": 56, "gap_rates": [0.3724, 0.2738, 0.183, 0.1216, 0.0982, 0.0848, 0.066, 0.0532, 0.0428, 0.0262, 0.0206, 0.0196, 0.0218, 0.0172, 0.0104, 0.0098, 0.007, 0.0064, 0.0056, 0.0116, 0.022, 0.0034, 0.0014, 0.0012, 0.0008, 0.0002, 0.0002, 0.0006, 0.0012, 0.003, 0.0032, 0.0056, 0.9144, 0.0304, 0.0106, 0.036, 0.0184, 0.0204, 0.0276, 0.036, 0.0406, 0.043, 0.0452, 0.0476, 0.052, 0.0592, 0.065, 0.0712, 0.078, 0.0956, 0.1266, 0.1452, 0.183, 0.2822, 0.4268, 0.5752], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_32.gap.json b/pfam_gap_rates/HTH_32.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9365adf44731c5284769e74696f5f02b6a152236
--- /dev/null
+++ b/pfam_gap_rates/HTH_32.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_32", "n_seqs": 973, "length": 96, "gap_rates": [0.33093525179856115, 0.17677286742034942, 0.14285714285714285, 0.050359712230215826, 0.03699897225077081, 0.03186022610483042, 0.030832476875642344, 0.02877697841726619, 0.046248715313463515, 0.03597122302158273, 0.03186022610483042, 0.02877697841726619, 0.03802672147995889, 0.09352517985611511, 0.08324768756423433, 0.8674203494347379, 0.012332990750256937, 0.010277492291880781, 0.008221993833504625, 0.9260020554984584, 0.0041109969167523125, 0.0051387461459403904, 0.06063720452209661, 0.03699897225077081, 0.019527235354573486, 0.9362795477903392, 0.8828365878725591, 0.02672147995889003, 0.8797533401849948, 0.9455292908530318, 0.7769784172661871, 0.011305241521068859, 0.012332990750256937, 0.006166495375128468, 0.789311408016444, 0.9373072970195272, 0.6546762589928058, 0.0328879753340185, 0.0010277492291880781, 0.0010277492291880781, 0.0010277492291880781, 0.0010277492291880781, 0.0041109969167523125, 0.0051387461459403904, 0.003083247687564234, 0.0010277492291880781, 0.0010277492291880781, 0.0010277492291880781, 0.0010277492291880781, 0.0, 0.0010277492291880781, 0.1695786228160329, 0.009249743062692703, 0.9013360739979445, 0.01644398766700925, 0.03802672147995889, 0.43884892086330934, 0.5549845837615622, 0.7985611510791367, 0.8561151079136691, 0.829393627954779, 0.6464542651593012, 0.48612538540596095, 0.41007194244604317, 0.008221993833504625, 0.019527235354573486, 0.0020554984583761563, 0.003083247687564234, 0.0020554984583761563, 0.003083247687564234, 0.003083247687564234, 0.003083247687564234, 0.003083247687564234, 0.0041109969167523125, 0.0041109969167523125, 0.2949640287769784, 0.17574511819116137, 0.17677286742034942, 0.18088386433710174, 0.8078108941418294, 0.1880781089414183, 0.1747173689619733, 0.02774922918807811, 0.894141829393628, 0.9260020554984584, 0.8304213771839671, 0.025693730729701953, 0.02774922918807811, 0.02877697841726619, 0.030832476875642344, 0.03699897225077081, 0.044193216855087356, 0.052415210688591986, 0.05858170606372045, 0.08530318602261049, 0.19013360739979446], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_44.gap.json b/pfam_gap_rates/HTH_44.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3baad891164a44efec14c96f62d550923eeadd06
--- /dev/null
+++ b/pfam_gap_rates/HTH_44.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_44", "n_seqs": 278, "length": 159, "gap_rates": [0.7158273381294964, 0.4460431654676259, 0.3776978417266187, 0.3345323741007194, 0.2158273381294964, 0.12949640287769784, 0.07194244604316546, 0.06474820143884892, 0.046762589928057555, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.802158273381295, 0.8201438848920863, 0.9172661870503597, 0.9028776978417267, 0.8165467625899281, 0.802158273381295, 0.03597122302158273, 0.07194244604316546, 0.07194244604316546, 0.07913669064748201, 0.08992805755395683, 0.12589928057553956, 0.2302158273381295, 0.2014388489208633, 0.18345323741007194, 0.2697841726618705, 0.45323741007194246, 0.5143884892086331, 0.6079136690647482, 0.7302158273381295, 0.7913669064748201, 0.8237410071942446, 0.8884892086330936, 0.8992805755395683, 0.8884892086330936, 0.8776978417266187, 0.8057553956834532, 0.737410071942446, 0.6223021582733813, 0.5719424460431655, 0.4712230215827338, 0.4064748201438849, 0.050359712230215826, 0.03597122302158273, 0.03597122302158273, 0.02877697841726619, 0.03237410071942446, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.017985611510791366, 0.014388489208633094, 0.01079136690647482, 0.01079136690647482, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.014388489208633094, 0.01079136690647482, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01079136690647482, 0.02158273381294964, 0.3776978417266187, 0.3776978417266187, 0.381294964028777, 0.38489208633093525, 0.38848920863309355, 0.38848920863309355, 0.39928057553956836, 0.4028776978417266, 0.5683453237410072, 0.5935251798561151, 0.6294964028776978, 0.6870503597122302, 0.737410071942446, 0.762589928057554, 0.8992805755395683, 0.8273381294964028, 0.7482014388489209, 0.7266187050359713, 0.6438848920863309, 0.6151079136690647, 0.5827338129496403, 0.5035971223021583, 0.45323741007194246, 0.4316546762589928, 0.07194244604316546, 0.0539568345323741, 0.03237410071942446, 0.03237410071942446, 0.03237410071942446, 0.03237410071942446, 0.03237410071942446, 0.0, 0.9316546762589928, 0.9316546762589928, 0.935251798561151, 0.935251798561151, 0.9424460431654677, 0.935251798561151, 0.935251798561151, 0.9316546762589928, 0.9316546762589928, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.007194244604316547, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.017985611510791366, 0.02158273381294964, 0.02158273381294964, 0.025179856115107913, 0.02877697841726619, 0.039568345323741004, 0.05755395683453238, 0.22302158273381295, 0.2805755395683453, 0.4568345323741007, 0.7517985611510791, 0.7841726618705036, 0.8848920863309353], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_Tnp_1.gap.json b/pfam_gap_rates/HTH_Tnp_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c6cb2454d67e3f39dc309ba23b03833f1a365a1
--- /dev/null
+++ b/pfam_gap_rates/HTH_Tnp_1.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_Tnp_1", "n_seqs": 3331, "length": 95, "gap_rates": [0.8868207745421796, 0.7187030921645151, 0.4560192134494146, 0.3470429300510357, 0.1837286100270189, 0.12578805163614531, 0.10507355148604022, 0.07985589912939058, 0.07265085559891925, 0.0687481236865806, 0.06544581206844792, 0.05944160912638847, 0.058540978685079556, 0.053737616331432, 0.047132993095166616, 0.04413089162413689, 0.04142900030021015, 0.03932752927048934, 0.03752626838787151, 0.9348543980786551, 0.903332332632843, 0.30651456019213447, 0.04863404383068148, 0.022815971179825877, 0.02161513059141399, 0.02731912338637046, 0.018312818973281297, 0.018012608826178327, 0.012308616031221855, 0.00870609426598619, 0.007805463824677274, 0.006004202942059442, 0.004503152206544582, 0.004803362353647553, 0.004803362353647553, 0.004202942059441609, 0.006004202942059442, 0.006304413089162414, 0.007805463824677274, 0.008405884118883218, 0.010507355148604023, 0.010507355148604023, 0.011107775442809968, 0.015010507355148604, 0.01621134794356049, 0.018012608826178327, 0.02011407985589913, 0.02311618132692885, 0.030621435004503154, 0.24437105974181927, 0.7193035124587212, 0.8006604623236265, 0.8570999699789853, 0.9213449414590213, 0.8447913539477634, 0.7679375562894026, 0.5716001200840588, 0.08676073251275893, 0.1215851095767037, 0.12428700090063044, 0.1365956169318523, 0.15190633443410387, 0.17081957370159112, 0.18883218252776943, 0.1957370159111378, 0.19393575502851995, 0.731011708195737, 0.79495646952867, 0.8733113179225458, 0.924347042930051, 0.9408586010207145, 0.9495646952867007, 0.935755028519964, 0.8955268688081657, 0.8228760132092465, 0.7616331432002401, 0.6940858601020714, 0.5794055839087361, 0.29870909636745724, 0.2638847193035125, 0.2440708495947163, 0.24136895827078955, 0.2419693785649955, 0.24707295106574603, 0.2518763134193936, 0.25637946562593816, 0.26508555989192434, 0.2743920744521165, 0.28549984989492644, 0.29660762533773644, 0.3161212848994296, 0.3482437706394476, 0.40378264785349743, 0.4698288802161513, 0.7808465926148304], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_WhiA.gap.json b/pfam_gap_rates/HTH_WhiA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50a2dc4521dade00e5cec002d17985f34dacde3b
--- /dev/null
+++ b/pfam_gap_rates/HTH_WhiA.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_WhiA", "n_seqs": 872, "length": 88, "gap_rates": [0.11811926605504587, 0.03096330275229358, 0.008027522935779817, 0.005733944954128441, 0.005733944954128441, 0.005733944954128441, 0.005733944954128441, 0.005733944954128441, 0.005733944954128441, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0034403669724770644, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.008027522935779817, 0.006880733944954129, 0.25344036697247707, 0.008027522935779817, 0.0034403669724770644, 0.0034403669724770644, 0.0022935779816513763, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0011467889908256881, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9025229357798165, 0.9197247706422018, 0.9048165137614679, 0.7121559633027523, 0.05733944954128441, 0.05619266055045872, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011467889908256881, 0.009174311926605505, 0.06651376146788991, 0.19036697247706422], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_psq.gap.json b/pfam_gap_rates/HTH_psq.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7805a05a82d7ee88f6917592fdc1508dee56d2dd
--- /dev/null
+++ b/pfam_gap_rates/HTH_psq.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_psq", "n_seqs": 899, "length": 48, "gap_rates": [0.746384872080089, 0.4360400444938821, 0.3325917686318131, 0.20244716351501668, 0.12347052280311457, 0.0878754171301446, 0.06117908787541713, 0.041156840934371525, 0.035595105672969966, 0.028921023359288096, 0.021134593993325918, 0.017797552836484983, 0.01668520578420467, 0.9132369299221357, 0.012235817575083427, 0.011123470522803115, 0.1735261401557286, 0.8097886540600667, 0.004449388209121246, 0.002224694104560623, 0.0011123470522803114, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011123470522803114, 0.0011123470522803114, 0.0033370411568409346, 0.0033370411568409346, 0.013348164627363738, 0.013348164627363738, 0.014460511679644048, 0.021134593993325918, 0.6173526140155728, 0.05228031145717464, 0.09343715239154617, 0.14126807563959956, 0.1835372636262514, 0.2914349276974416, 0.42825361512791993, 0.5394883203559511, 0.6229143492769744, 0.7163515016685206, 0.8264738598442715, 0.9399332591768632], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HXXSHH.gap.json b/pfam_gap_rates/HXXSHH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbce0bb3273f8837b6eb2c5b0b2d17dd897f53d5
--- /dev/null
+++ b/pfam_gap_rates/HXXSHH.gap.json
@@ -0,0 +1 @@
+{"family": "HXXSHH", "n_seqs": 302, "length": 397, "gap_rates": [0.19536423841059603, 0.17218543046357615, 0.12582781456953643, 0.11258278145695365, 0.11258278145695365, 0.11258278145695365, 0.09602649006622517, 0.08609271523178808, 0.07947019867549669, 0.0695364238410596, 0.06622516556291391, 0.06622516556291391, 0.06622516556291391, 0.06291390728476821, 0.8940397350993378, 0.9006622516556292, 0.9006622516556292, 0.9172185430463576, 0.9437086092715232, 0.9271523178807947, 0.9139072847682119, 0.9006622516556292, 0.8940397350993378, 0.8940397350993378, 0.0695364238410596, 0.052980132450331126, 0.04966887417218543, 0.04966887417218543, 0.9006622516556292, 0.9470198675496688, 0.9271523178807947, 0.8344370860927153, 0.17549668874172186, 0.6622516556291391, 0.08609271523178808, 0.0695364238410596, 0.0728476821192053, 0.0695364238410596, 0.0728476821192053, 0.04966887417218543, 0.8973509933774835, 0.9172185430463576, 0.9238410596026491, 0.9470198675496688, 0.9470198675496688, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Haemolytic.gap.json b/pfam_gap_rates/Haemolytic.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8bf48058ba02cbff7345f730d6958855267140e9
--- /dev/null
+++ b/pfam_gap_rates/Haemolytic.gap.json
@@ -0,0 +1 @@
+{"family": "Haemolytic", "n_seqs": 1766, "length": 73, "gap_rates": [0.7599093997734995, 0.40260475651189126, 0.1970554926387316, 0.09682899207248018, 0.06625141562853908, 0.04360135900339751, 0.033408833522083806, 0.028878822197055492, 0.02548131370328426, 0.02378255945639864, 0.02378255945639864, 0.02378255945639864, 0.0232163080407701, 0.02548131370328426, 0.019818799546998868, 0.01812004530011325, 0.01812004530011325, 0.8471121177802945, 0.8187995469988675, 0.01812004530011325, 0.011325028312570781, 0.15175537938844846, 0.912797281993205, 0.9309173272933182, 0.920158550396376, 0.8556058890147226, 0.13306908267270667, 0.010758776896942242, 0.010192525481313703, 0.010192525481313703, 0.010192525481313703, 0.010192525481313703, 0.010192525481313703, 0.010192525481313703, 0.010192525481313703, 0.010192525481313703, 0.010192525481313703, 0.009626274065685165, 0.003963759909399773, 0.0028312570781426952, 0.0028312570781426952, 0.0028312570781426952, 0.0028312570781426952, 0.0028312570781426952, 0.0028312570781426952, 0.0022650056625141564, 0.0022650056625141564, 0.007927519818799546, 0.003963759909399773, 0.0033975084937712344, 0.0011325028312570782, 0.0016987542468856172, 0.0022650056625141564, 0.0028312570781426952, 0.0028312570781426952, 0.0033975084937712344, 0.0033975084937712344, 0.0033975084937712344, 0.0033975084937712344, 0.0033975084937712344, 0.008493771234428085, 0.014156285390713477, 0.01698754246885617, 0.02548131370328426, 0.039637599093997736, 0.045300113250283124, 0.05492638731596829, 0.06058890147225368, 0.06511891279728199, 0.06625141562853908, 0.07078142695356739, 0.08890147225368063, 0.20498301245753114], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Halogen_Hydrol.gap.json b/pfam_gap_rates/Halogen_Hydrol.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2f0f9066f649c1a4bad8eddc331468313ed5639
--- /dev/null
+++ b/pfam_gap_rates/Halogen_Hydrol.gap.json
@@ -0,0 +1 @@
+{"family": "Halogen_Hydrol", "n_seqs": 282, "length": 292, "gap_rates": [0.8404255319148937, 0.7943262411347518, 0.7340425531914894, 0.6702127659574468, 0.599290780141844, 0.5673758865248227, 0.5319148936170213, 0.5141843971631206, 0.4858156028368794, 0.46099290780141844, 0.44680851063829785, 0.43617021276595747, 0.4326241134751773, 0.41134751773049644, 0.3829787234042553, 0.36524822695035464, 0.35815602836879434, 0.34397163120567376, 0.3404255319148936, 0.35106382978723405, 0.33687943262411346, 0.3262411347517731, 0.3120567375886525, 0.3049645390070922, 0.30141843971631205, 0.2907801418439716, 0.2872340425531915, 0.2872340425531915, 0.9184397163120568, 0.9432624113475178, 0.8794326241134752, 0.33687943262411346, 0.3404255319148936, 0.32269503546099293, 0.2907801418439716, 0.8439716312056738, 0.925531914893617, 0.75177304964539, 0.2553191489361702, 0.2553191489361702, 0.24822695035460993, 0.24822695035460993, 0.24822695035460993, 0.2553191489361702, 0.25177304964539005, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HcyBio.gap.json b/pfam_gap_rates/HcyBio.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17963e9155eda77db2d23a211a8a8107a2807e87
--- /dev/null
+++ b/pfam_gap_rates/HcyBio.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Helicase_C_3.gap.json b/pfam_gap_rates/Helicase_C_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d69e0fd07fe4ca492398bb4fcdc8b420b22f403f
--- /dev/null
+++ b/pfam_gap_rates/Helicase_C_3.gap.json
@@ -0,0 +1 @@
+{"family": "Helicase_C_3", "n_seqs": 869, "length": 131, "gap_rates": [0.3095512082853855, 0.17031070195627157, 0.1472957422324511, 0.13118527042577677, 0.1093210586881473, 0.9194476409666283, 0.07479861910241657, 0.06444188722669736, 0.05178365937859609, 0.03682393555811277, 0.03567318757192175, 0.03567318757192175, 0.03567318757192175, 0.03567318757192175, 0.30724971231300346, 0.3003452243958573, 0.04257767548906789, 0.03452243958573072, 0.0333716915995397, 0.0333716915995397, 0.031070195627157654, 0.028768699654775604, 0.026467203682393557, 0.02531645569620253, 0.02531645569620253, 0.02186421173762946, 0.023014959723820484, 0.024165707710011506, 0.020713463751438434, 0.020713463751438434, 0.020713463751438434, 0.020713463751438434, 0.019562715765247412, 0.018411967779056387, 0.01726121979286536, 0.2899884925201381, 0.031070195627157654, 0.031070195627157654, 0.02761795166858458, 0.011507479861910242, 0.009205983889528193, 0.009205983889528193, 0.005753739930955121, 0.005753739930955121, 0.005753739930955121, 0.004602991944764097, 0.004602991944764097, 0.004602991944764097, 0.004602991944764097, 0.004602991944764097, 0.004602991944764097, 0.004602991944764097, 0.004602991944764097, 0.004602991944764097, 0.005753739930955121, 0.006904487917146145, 0.005753739930955121, 0.006904487917146145, 0.006904487917146145, 0.006904487917146145, 0.005753739930955121, 0.005753739930955121, 0.005753739930955121, 0.005753739930955121, 0.005753739930955121, 0.014959723820483314, 0.014959723820483314, 0.01611047180667434, 0.01726121979286536, 0.01726121979286536, 0.01726121979286536, 0.02761795166858458, 0.009205983889528193, 0.00805523590333717, 0.00805523590333717, 0.00805523590333717, 0.00805523590333717, 0.00805523590333717, 0.00805523590333717, 0.00805523590333717, 0.00805523590333717, 0.009205983889528193, 0.00805523590333717, 0.010356731875719217, 0.010356731875719217, 0.014959723820483314, 0.014959723820483314, 0.01611047180667434, 0.019562715765247412, 0.02186421173762946, 0.02186421173762946, 0.023014959723820484, 0.024165707710011506, 0.024165707710011506, 0.024165707710011506, 0.27963176064441886, 0.7422324510932106, 0.9367088607594937, 0.29344073647871116, 0.08285385500575373, 0.04027617951668585, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04257767548906789, 0.04833141542002301, 0.05293440736478711, 0.04602991944764097, 0.05063291139240506, 0.05063291139240506, 0.05178365937859609, 0.05408515535097814, 0.05408515535097814, 0.05638665132336018, 0.05753739930955121, 0.06444188722669736, 0.07479861910241657, 0.0805523590333717, 0.08860759493670886, 0.08975834292289989, 0.09551208285385501, 0.1093210586881473, 0.12543153049482164, 0.1760644418872267, 0.2336018411967779, 0.35903337169159955, 0.49712313003452246, 0.6133486766398158, 0.7940161104718066], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Helitron_like_N.gap.json b/pfam_gap_rates/Helitron_like_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2598da656b1d732accd9b8ebbcb805d8bfc797f1
--- /dev/null
+++ b/pfam_gap_rates/Helitron_like_N.gap.json
@@ -0,0 +1 @@
+{"family": "Helitron_like_N", "n_seqs": 1048, "length": 244, "gap_rates": [0.6393129770992366, 0.6173664122137404, 0.6059160305343512, 0.5830152671755725, 0.5687022900763359, 0.5591603053435115, 0.9074427480916031, 0.5343511450381679, 0.8778625954198473, 0.8520992366412213, 0.4961832061068702, 0.48759541984732824, 0.4780534351145038, 0.4761450381679389, 0.4933206106870229, 0.4532442748091603, 0.4446564885496183, 0.43702290076335876, 0.7977099236641222, 0.42748091603053434, 0.4179389312977099, 0.41412213740458015, 0.4083969465648855, 0.40458015267175573, 0.4026717557251908, 0.3969465648854962, 0.3969465648854962, 0.39599236641221375, 0.4446564885496183, 0.44561068702290074, 0.5448473282442748, 0.5419847328244275, 0.5400763358778626, 0.5276717557251909, 0.5229007633587787, 0.5143129770992366, 0.3788167938931298, 0.37404580152671757, 0.366412213740458, 0.36736641221374045, 0.366412213740458, 0.3606870229007634, 0.35782442748091603, 0.3568702290076336, 0.35591603053435117, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Hemocyanin_M.gap.json b/pfam_gap_rates/Hemocyanin_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d51908c5917221635d2fe4d15e545790515d0a54
--- /dev/null
+++ b/pfam_gap_rates/Hemocyanin_M.gap.json
@@ -0,0 +1 @@
+{"family": "Hemocyanin_M", "n_seqs": 209, "length": 310, "gap_rates": [0.507177033492823, 0.3923444976076555, 0.2679425837320574, 0.22966507177033493, 0.215311004784689, 0.1674641148325359, 0.16267942583732056, 0.16267942583732056, 0.16267942583732056, 0.16267942583732056, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15311004784688995, 0.15311004784688995, 0.15311004784688995, 0.15311004784688995, 0.15789473684210525, 0.15789473684210525, 0.16267942583732056, 0.16267942583732056, 0.2822966507177033, 0.22966507177033493, 0.2822966507177033, 0.32057416267942584, 0.37799043062200954, 0.4258373205741627, 0.6555023923444976, 0.7320574162679426, 0.7129186602870813, 0.8133971291866029, 0.84688995215311, 0.8995215311004785, 0.9282296650717703, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Hexokinase_1.gap.json b/pfam_gap_rates/Hexokinase_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f98370d15d08fa4c0e60f25953df41340fd003bd
--- /dev/null
+++ b/pfam_gap_rates/Hexokinase_1.gap.json
@@ -0,0 +1 @@
+{"family": "Hexokinase_1", "n_seqs": 1212, "length": 234, "gap_rates": [0.5338283828382838, 0.36303630363036304, 0.3028052805280528, 0.2698019801980198, 0.2599009900990099, 0.25, 0.2433993399339934, 0.23514851485148514, 0.22937293729372937, 0.20627062706270627, 0.19306930693069307, 0.18646864686468648, 0.1707920792079208, 0.1617161716171617, 0.1542904290429043, 0.14933993399339934, 0.14686468646864687, 0.1419141914191419, 0.14026402640264027, 0.13448844884488448, 0.132013201320132, 0.12046204620462046, 0.16254125412541254, 0.11963696369636964, 0.11716171617161716, 0.10891089108910891, 0.10808580858085809, 0.10808580858085809, 0.10808580858085809, 0.10808580858085809, 0.10808580858085809, 0.14026402640264027, 0.1353135313531353, 0.20462046204620463, 0.7351485148514851, 0.9364686468646864, 0.9397689768976898, 0.7887788778877888, 0.6138613861386139, 0.13448844884488448, 0.11798679867986799, 0.9381188118811881, 0.8399339933993399, 0.11056105610561057, 0.10396039603960396, 0.08663366336633663, 0.08498349834983498, 0.08415841584158416, 0.0858085808580858, 0.0858085808580858, 0.08663366336633663, 0.09570957095709572, 0.10231023102310231, 0.09323432343234324, 0.08415841584158416, 0.08168316831683169, 0.08828382838283828, 0.07343234323432343, 0.06930693069306931, 0.08003300330033003, 0.07590759075907591, 0.07178217821782178, 0.07013201320132013, 0.06930693069306931, 0.06930693069306931, 0.06765676567656766, 0.066006600660066, 0.06683168316831684, 0.06518151815181518, 0.06518151815181518, 0.06518151815181518, 0.06518151815181518, 0.06518151815181518, 0.06518151815181518, 0.06683168316831684, 0.06683168316831684, 0.066006600660066, 0.066006600660066, 0.066006600660066, 0.06518151815181518, 0.08085808580858085, 0.9364686468646864, 0.9133663366336634, 0.07508250825082509, 0.16831683168316833, 0.07838283828382839, 0.7722772277227723, 0.8985148514851485, 0.9488448844884488, 0.9306930693069307, 0.8968646864686468, 0.6501650165016502, 0.06930693069306931, 0.06765676567656766, 0.06765676567656766, 0.9265676567656765, 0.06848184818481848, 0.066006600660066, 0.06435643564356436, 0.06105610561056106, 0.06105610561056106, 0.9323432343234324, 0.764026402640264, 0.06188118811881188, 0.06353135313531354, 0.0627062706270627, 0.06188118811881188, 0.06353135313531354, 0.06353135313531354, 0.07095709570957096, 0.06930693069306931, 0.06353135313531354, 0.05693069306930693, 0.8572607260726073, 0.07178217821782178, 0.057755775577557754, 0.054455445544554455, 0.054455445544554455, 0.05528052805280528, 0.057755775577557754, 0.057755775577557754, 0.05858085808580858, 0.057755775577557754, 0.05693069306930693, 0.05528052805280528, 0.05528052805280528, 0.054455445544554455, 0.054455445544554455, 0.07013201320132013, 0.06848184818481848, 0.07095709570957096, 0.06765676567656766, 0.06353135313531354, 0.05858085808580858, 0.07260726072607261, 0.08085808580858085, 0.08498349834983498, 0.09735973597359736, 0.1311881188118812, 0.4372937293729373, 0.4900990099009901, 0.40924092409240925, 0.679042904290429, 0.858085808580858, 0.9026402640264026, 0.9191419141914191, 0.9306930693069307, 0.9364686468646864, 0.9463696369636964, 0.9488448844884488, 0.943069306930693, 0.9348184818481848, 0.9282178217821783, 0.9125412541254125, 0.8811881188118812, 0.7962046204620462, 0.6072607260726073, 0.2004950495049505, 0.066006600660066, 0.05363036303630363, 0.05033003300330033, 0.05033003300330033, 0.05198019801980198, 0.05198019801980198, 0.05115511551155116, 0.05115511551155116, 0.05198019801980198, 0.05198019801980198, 0.05033003300330033, 0.05115511551155116, 0.05363036303630363, 0.054455445544554455, 0.054455445544554455, 0.05115511551155116, 0.05858085808580858, 0.05528052805280528, 0.05858085808580858, 0.057755775577557754, 0.052805280528052806, 0.05363036303630363, 0.05363036303630363, 0.05115511551155116, 0.05693069306930693, 0.05198019801980198, 0.052805280528052806, 0.054455445544554455, 0.05528052805280528, 0.052805280528052806, 0.9455445544554455, 0.09983498349834984, 0.09488448844884488, 0.05528052805280528, 0.056105610561056105, 0.05528052805280528, 0.05528052805280528, 0.05363036303630363, 0.05198019801980198, 0.05115511551155116, 0.05115511551155116, 0.05115511551155116, 0.05115511551155116, 0.052805280528052806, 0.05363036303630363, 0.05528052805280528, 0.05528052805280528, 0.05528052805280528, 0.054455445544554455, 0.05528052805280528, 0.05693069306930693, 0.9414191419141914, 0.948019801980198, 0.9331683168316832, 0.05693069306930693, 0.6658415841584159, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.05858085808580858, 0.057755775577557754, 0.06188118811881188, 0.05858085808580858, 0.05858085808580858, 0.05858085808580858, 0.06023102310231023, 0.06023102310231023, 0.06105610561056106, 0.06188118811881188, 0.0627062706270627, 0.06435643564356436, 0.06765676567656766, 0.08250825082508251, 0.1254125412541254, 0.17656765676567657, 0.2334983498349835], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hfq.gap.json b/pfam_gap_rates/Hfq.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8585e4f43c111981e859afe3a76400ccaca74b1
--- /dev/null
+++ b/pfam_gap_rates/Hfq.gap.json
@@ -0,0 +1 @@
+{"family": "Hfq", "n_seqs": 876, "length": 64, "gap_rates": [0.07534246575342465, 0.05365296803652968, 0.045662100456621, 0.04337899543378995, 0.028538812785388126, 0.02511415525114155, 0.02054794520547945, 0.0182648401826484, 0.0182648401826484, 0.01598173515981735, 0.010273972602739725, 0.0091324200913242, 0.010273972602739725, 0.007990867579908675, 0.005707762557077625, 0.005707762557077625, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.00228310502283105, 0.00228310502283105, 0.001141552511415525, 0.001141552511415525, 0.00228310502283105, 0.00228310502283105, 0.00228310502283105, 0.00228310502283105, 0.001141552511415525, 0.001141552511415525, 0.001141552511415525, 0.001141552511415525, 0.001141552511415525, 0.001141552511415525, 0.001141552511415525, 0.0, 0.0, 0.01598173515981735, 0.003424657534246575, 0.010273972602739725, 0.3070776255707763, 0.0, 0.001141552511415525, 0.01141552511415525, 0.00228310502283105, 0.00228310502283105, 0.00228310502283105, 0.00228310502283105, 0.00228310502283105, 0.00228310502283105, 0.003424657534246575, 0.003424657534246575, 0.005707762557077625, 0.00684931506849315, 0.014840182648401826, 0.03424657534246575, 0.045662100456621, 0.07534246575342465, 0.0958904109589041, 0.1404109589041096, 0.8561643835616438], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HhH-GPD.gap.json b/pfam_gap_rates/HhH-GPD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3722ff125d2a17b879d7db5fe5395cbef81d2115
--- /dev/null
+++ b/pfam_gap_rates/HhH-GPD.gap.json
@@ -0,0 +1 @@
+{"family": "HhH-GPD", "n_seqs": 5000, "length": 169, "gap_rates": [0.348, 0.1012, 0.0596, 0.0478, 0.0314, 0.0306, 0.0292, 0.0274, 0.0242, 0.0234, 0.0228, 0.0216, 0.0206, 0.0202, 0.0196, 0.0184, 0.0172, 0.0164, 0.016, 0.0164, 0.0154, 0.0148, 0.0142, 0.0138, 0.3936, 0.5514, 0.7812, 0.8158, 0.8242, 0.8324, 0.868, 0.878, 0.9128, 0.8742, 0.8522, 0.828, 0.8202, 0.801, 0.7454, 0.291, 0.114, 0.0096, 0.0094, 0.009, 0.0088, 0.0084, 0.0078, 0.0084, 0.0098, 0.0108, 0.0132, 0.011, 0.0092, 0.0064, 0.0066, 0.0064, 0.0078, 0.2552, 0.253, 0.2474, 0.2368, 0.0124, 0.0124, 0.0106, 0.3588, 0.0102, 0.0084, 0.0038, 0.0042, 0.0044, 0.005, 0.005, 0.0048, 0.005, 0.0056, 0.0062, 0.0072, 0.0078, 0.0072, 0.013, 0.0134, 0.0148, 0.0152, 0.017, 0.0184, 0.0202, 0.0218, 0.0238, 0.0256, 0.0274, 0.0284, 0.03, 0.0368, 0.0492, 0.2738, 0.6326, 0.6514, 0.6796, 0.7256, 0.898, 0.9352, 0.9468, 0.9494, 0.945, 0.9268, 0.866, 0.7108, 0.6666, 0.6432, 0.2948, 0.0618, 0.039, 0.0336, 0.0292, 0.0278, 0.0268, 0.0248, 0.0234, 0.0208, 0.019, 0.0178, 0.016, 0.0148, 0.0148, 0.0134, 0.0122, 0.0104, 0.286, 0.3908, 0.1714, 0.1632, 0.0684, 0.0296, 0.0306, 0.036, 0.0294, 0.0308, 0.0318, 0.0322, 0.0332, 0.0334, 0.0338, 0.0346, 0.0404, 0.0496, 0.0572, 0.0668, 0.0806, 0.0998, 0.1144, 0.1284, 0.3816, 0.9308, 0.3492, 0.2534, 0.249, 0.2514, 0.264, 0.2766, 0.2946, 0.3138, 0.336, 0.3592, 0.4708, 0.457, 0.5136, 0.5932, 0.6868, 0.9488], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hira.gap.json b/pfam_gap_rates/Hira.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a199357300e62c20fa7b665262c8dad86a33f714
--- /dev/null
+++ b/pfam_gap_rates/Hira.gap.json
@@ -0,0 +1 @@
+{"family": "Hira", "n_seqs": 311, "length": 259, "gap_rates": [0.2282958199356913, 0.22508038585209003, 0.21864951768488747, 0.2090032154340836, 0.19935691318327975, 0.19292604501607716, 0.1864951768488746, 0.1832797427652733, 0.17684887459807075, 0.1639871382636656, 0.1607717041800643, 0.14790996784565916, 0.1414790996784566, 0.13504823151125403, 0.12861736334405144, 0.12861736334405144, 0.12861736334405144, 0.12540192926045016, 0.12540192926045016, 0.12218649517684887, 0.12218649517684887, 0.8135048231511254, 0.12218649517684887, 0.12218649517684887, 0.12218649517684887, 0.1189710610932476, 0.1189710610932476, 0.1189710610932476, 0.1189710610932476, 0.1189710610932476, 0.1189710610932476, 0.1189710610932476, 0.12218649517684887, 0.1189710610932476, 0.1189710610932476, 0.1189710610932476, 0.12218649517684887, 0.12218649517684887, 0.12218649517684887, 0.13183279742765272, 0.13504823151125403, 0.12861736334405144, 0.12861736334405144, 0.12861736334405144, 0.13183279742765272, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HisG.gap.json b/pfam_gap_rates/HisG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8796fc07f40a08654098f244505ae3238dd7bb39
--- /dev/null
+++ b/pfam_gap_rates/HisG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/His_biosynth.gap.json b/pfam_gap_rates/His_biosynth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37ab896665e66cb5c1c9a0c1abaac14799178e7a
--- /dev/null
+++ b/pfam_gap_rates/His_biosynth.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Hormone_recep.gap.json b/pfam_gap_rates/Hormone_recep.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16fdc663c06f267ebf3d1a59cdd7251a8b0445c4
--- /dev/null
+++ b/pfam_gap_rates/Hormone_recep.gap.json
@@ -0,0 +1 @@
+{"family": "Hormone_recep", "n_seqs": 2765, "length": 228, "gap_rates": [0.925497287522604, 0.8943942133815551, 0.8354430379746836, 0.789873417721519, 0.7555153707052441, 0.7171790235081374, 0.6741410488245931, 0.6386980108499096, 0.6018083182640145, 0.5435804701627487, 0.45895117540687164, 0.3877034358047016, 0.3135623869801085, 0.26582278481012656, 0.2546112115732369, 0.23942133815551536, 0.22278481012658227, 0.20904159132007233, 0.18842676311030743, 0.17070524412296564, 0.1511754068716094, 0.13236889692585896, 0.12658227848101267, 0.12079566003616636, 0.11175406871609403, 0.10849909584086799, 0.10596745027124774, 0.10452079566003616, 0.10343580470162748, 0.10054249547920434, 0.0969258589511754, 0.09367088607594937, 0.09294755877034358, 0.09547920433996383, 0.09258589511754069, 0.08824593128390597, 0.08607594936708861, 0.08969258589511754, 0.08173598553345389, 0.07956600361663653, 0.07848101265822785, 0.0755877034358047, 0.07414104882459313, 0.07414104882459313, 0.07269439421338156, 0.07233273056057866, 0.07341772151898734, 0.07377938517179024, 0.07414104882459313, 0.07341772151898734, 0.0755877034358047, 0.07522603978300181, 0.07486437613019892, 0.07450271247739602, 0.07414104882459313, 0.07522603978300181, 0.07486437613019892, 0.07486437613019892, 0.07631103074141049, 0.07631103074141049, 0.07703435804701628, 0.14719710669077757, 0.13851717902350813, 0.1298372513562387, 0.1023508137432188, 0.08716094032549729, 0.11175406871609403, 0.1077757685352622, 0.09511754068716094, 0.10922242314647378, 0.10126582278481013, 0.09837251356238698, 0.10632911392405063, 0.10488245931283906, 0.10922242314647378, 0.13562386980108498, 0.2314647377938517, 0.27450271247739605, 0.26799276672694394, 0.28354430379746837, 0.47486437613019894, 0.5891500904159132, 0.6759493670886076, 0.7298372513562387, 0.8632911392405064, 0.9283905967450271, 0.9446654611211573, 0.9045207956600362, 0.8339963833634719, 0.8043399638336347, 0.7352622061482821, 0.6990958408679928, 0.6730560578661845, 0.5996383363471971, 0.4835443037974684, 0.4216998191681736, 0.37106690777576856, 0.32730560578661844, 0.2824593128390597, 0.23544303797468355, 0.19746835443037974, 0.17938517179023508, 0.16455696202531644, 0.13815551537070525, 0.11790235081374321, 0.12188065099457504, 0.13128390596745027, 0.13743218806509946, 0.14972875226039783, 0.16636528028933092, 0.9251356238698011, 0.6430379746835443, 0.6130198915009042, 0.5880650994575045, 0.5743218806509945, 0.5468354430379747, 0.5171790235081374, 0.4755877034358047, 0.464376130198915, 0.4358047016274864, 0.5927667269439422, 0.07233273056057866, 0.06726943942133816, 0.06546112115732369, 0.06220614828209765, 0.060759493670886074, 0.0593128390596745, 0.058589511754068714, 0.057504520795660034, 0.0593128390596745, 0.056419529837251355, 0.05605786618444846, 0.05569620253164557, 0.05569620253164557, 0.05497287522603978, 0.055334538878842675, 0.05497287522603978, 0.054249547920433995, 0.05461121157323689, 0.05461121157323689, 0.05497287522603978, 0.05461121157323689, 0.0538878842676311, 0.0538878842676311, 0.06003616636528029, 0.23471971066907776, 0.2582278481012658, 0.7862567811934901, 0.7645569620253164, 0.9226039783001808, 0.7840867992766727, 0.74249547920434, 0.15877034358047015, 0.14647377938517178, 0.10886075949367088, 0.4365280289330922, 0.9403254972875226, 0.34249547920434, 0.09837251356238698, 0.10524412296564195, 0.10488245931283906, 0.09909584086799277, 0.6336347197106691, 0.6274864376130199, 0.09873417721518987, 0.09258589511754069, 0.0922242314647378, 0.09041591320072333, 0.09113924050632911, 0.09113924050632911, 0.09113924050632911, 0.0918625678119349, 0.0922242314647378, 0.09294755877034358, 0.09475587703435805, 0.09620253164556962, 0.09620253164556962, 0.0969258589511754, 0.10054249547920434, 0.10488245931283906, 0.10560578661844484, 0.10560578661844484, 0.11428571428571428, 0.12694394213381555, 0.12839059674502712, 0.6698010849909584, 0.8094032549728752, 0.8564195298372513, 0.7095840867992766, 0.6112115732368897, 0.13779385171790234, 0.18553345388788428, 0.1244122965641953, 0.4376130198915009, 0.8245931283905967, 0.9330922242314648, 0.8770343580470162, 0.5128390596745027, 0.4104882459312839, 0.12477396021699819, 0.12802893309222424, 0.12802893309222424, 0.12875226039783003, 0.1294755877034358, 0.1341772151898734, 0.13453887884267632, 0.13707052441229656, 0.1399638336347197, 0.14394213381555154, 0.14864376130198914, 0.1515370705244123, 0.1620253164556962, 0.17106690777576852, 0.18010849909584087, 0.19168173598553345, 0.20759493670886076, 0.22965641952983726, 0.24990958408679928, 0.2705244122965642, 0.2933092224231465, 0.31681735985533455, 0.34864376130198915, 0.3913200723327306, 0.43435804701627484, 0.4835443037974684, 0.5392405063291139, 0.6213381555153707, 0.8141048824593128], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hpt.gap.json b/pfam_gap_rates/Hpt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b0d81bfe7dfe7ccc9725fc9eeb7247187b53b53
--- /dev/null
+++ b/pfam_gap_rates/Hpt.gap.json
@@ -0,0 +1 @@
+{"family": "Hpt", "n_seqs": 5000, "length": 105, "gap_rates": [0.677, 0.3258, 0.2254, 0.1674, 0.13, 0.1022, 0.0946, 0.0858, 0.08, 0.0756, 0.0674, 0.0604, 0.0546, 0.0432, 0.0372, 0.0312, 0.0292, 0.0384, 0.0336, 0.0326, 0.024, 0.5138, 0.5278, 0.5536, 0.6308, 0.9322, 0.5838, 0.5384, 0.5222, 0.5058, 0.0258, 0.0394, 0.0152, 0.9294, 0.8974, 0.0088, 0.007, 0.0058, 0.0044, 0.0024, 0.0018, 0.0008, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002, 0.0002, 0.0002, 0.0004, 0.0004, 0.0012, 0.0014, 0.0016, 0.0018, 0.0024, 0.0024, 0.0032, 0.004, 0.0046, 0.0052, 0.0054, 0.0068, 0.0072, 0.1706, 0.1554, 0.1836, 0.5442, 0.938, 0.4202, 0.2394, 0.2104, 0.1128, 0.1028, 0.0984, 0.0984, 0.1056, 0.1156, 0.1236, 0.1334, 0.1502, 0.1634, 0.1686, 0.757, 0.7954, 0.835, 0.8416, 0.8302, 0.7666, 0.7346, 0.2084, 0.2498, 0.2686, 0.2892, 0.325, 0.369, 0.4058, 0.4756, 0.5358, 0.6662, 0.8382], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HsbA.gap.json b/pfam_gap_rates/HsbA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..783143faadf0f5a249fb91508b1fa3ea3b8a29fd
--- /dev/null
+++ b/pfam_gap_rates/HsbA.gap.json
@@ -0,0 +1 @@
+{"family": "HsbA", "n_seqs": 296, "length": 136, "gap_rates": [0.8648648648648649, 0.3885135135135135, 0.24324324324324326, 0.1554054054054054, 0.125, 0.0945945945945946, 0.07432432432432433, 0.057432432432432436, 0.05067567567567568, 0.04391891891891892, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.04391891891891892, 0.04054054054054054, 0.04054054054054054, 0.037162162162162164, 0.033783783783783786, 0.02702702702702703, 0.02702702702702703, 0.02364864864864865, 0.02364864864864865, 0.02364864864864865, 0.02702702702702703, 0.04391891891891892, 0.06418918918918919, 0.037162162162162164, 0.7533783783783784, 0.9222972972972973, 0.8513513513513513, 0.581081081081081, 0.05405405405405406, 0.32094594594594594, 0.2533783783783784, 0.17567567567567569, 0.04054054054054054, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.010135135135135136, 0.006756756756756757, 0.006756756756756757, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.006756756756756757, 0.010135135135135136, 0.0033783783783783786, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8006756756756757, 0.02364864864864865, 0.0, 0.0, 0.0, 0.0033783783783783786, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8378378378378378, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.9358108108108109, 0.9358108108108109, 0.9324324324324325, 0.04054054054054054, 0.037162162162162164, 0.8817567567567568, 0.02702702702702703, 0.033783783783783786, 0.9290540540540541, 0.9425675675675675, 0.9459459459459459, 0.9358108108108109, 0.9121621621621622, 0.033783783783783786, 0.037162162162162164, 0.037162162162162164, 0.04054054054054054, 0.05067567567567568, 0.05405405405405406, 0.057432432432432436, 0.057432432432432436, 0.05405405405405406, 0.06418918918918919, 0.06756756756756757, 0.06756756756756757, 0.07432432432432433, 0.08108108108108109, 0.08108108108108109, 0.08783783783783784, 0.09797297297297297, 0.11148648648648649, 0.11824324324324324, 0.14527027027027026, 0.17905405405405406, 0.21621621621621623, 0.35135135135135137, 0.8885135135135135], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HupH_C.gap.json b/pfam_gap_rates/HupH_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e84358fbbca71ad2c9e90a6a902120ef4bd9c669
--- /dev/null
+++ b/pfam_gap_rates/HupH_C.gap.json
@@ -0,0 +1 @@
+{"family": "HupH_C", "n_seqs": 158, "length": 124, "gap_rates": [0.6518987341772152, 0.5316455696202531, 0.4177215189873418, 0.2721518987341772, 0.22784810126582278, 0.20253164556962025, 0.17088607594936708, 0.12658227848101267, 0.12025316455696203, 0.12025316455696203, 0.0949367088607595, 0.0949367088607595, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.11392405063291139, 0.9367088607594937, 0.15822784810126583, 0.9430379746835443, 0.9493670886075949, 0.9430379746835443, 0.930379746835443, 0.10759493670886076, 0.08227848101265822, 0.08227848101265822, 0.0759493670886076, 0.08227848101265822, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08227848101265822, 0.05063291139240506, 0.06962025316455696, 0.10759493670886076, 0.14556962025316456, 0.1518987341772152, 0.12025316455696203, 0.06329113924050633, 0.02531645569620253, 0.02531645569620253, 0.0189873417721519, 0.012658227848101266, 0.006329113924050633, 0.012658227848101266, 0.012658227848101266, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006329113924050633, 0.012658227848101266, 0.02531645569620253, 0.0379746835443038, 0.02531645569620253, 0.006329113924050633, 0.8734177215189873, 0.0, 0.006329113924050633, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006329113924050633, 0.0379746835443038, 0.05063291139240506, 0.06962025316455696, 0.10759493670886076, 0.08227848101265822, 0.06962025316455696, 0.08860759493670886, 0.08860759493670886, 0.08227848101265822, 0.05063291139240506, 0.04430379746835443, 0.0379746835443038, 0.03164556962025317, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.04430379746835443, 0.056962025316455694, 0.06962025316455696, 0.10126582278481013, 0.18354430379746836, 0.23417721518987342, 0.2911392405063291, 0.2911392405063291, 0.33544303797468356, 0.33544303797468356, 0.37341772151898733, 0.379746835443038, 0.3860759493670886, 0.3924050632911392, 0.3924050632911392, 0.3987341772151899, 0.41139240506329117, 0.41139240506329117, 0.41139240506329117, 0.43037974683544306, 0.47468354430379744, 0.5949367088607594, 0.8860759493670886], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hydrolase_4.gap.json b/pfam_gap_rates/Hydrolase_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bfc8d419f217684d48dda2a531c2bfea5b6c75ba
--- /dev/null
+++ b/pfam_gap_rates/Hydrolase_4.gap.json
@@ -0,0 +1 @@
+{"family": "Hydrolase_4", "n_seqs": 5000, "length": 287, "gap_rates": [0.7752, 0.6386, 0.5384, 0.4496, 0.3524, 0.2836, 0.266, 0.2626, 0.2584, 0.2556, 0.2526, 0.2502, 0.2482, 0.2464, 0.2432, 0.2348, 0.2356, 0.2172, 0.2034, 0.1836, 0.1658, 0.9204, 0.1382, 0.1288, 0.1262, 0.1242, 0.122, 0.121, 0.1216, 0.1148, 0.1078, 0.096, 0.0888, 0.086, 0.0844, 0.0838, 0.0828, 0.0834, 0.0836, 0.0842, 0.0858, 0.0856, 0.0848, 0.0846, 0.0824, 0.2066, 0.7666, 0.8674, 0.9254, 0.8868, 0.805, 0.7362, 0.1402, 0.1484, 0.1378, 0.1354, 0.3134, 0.1946, 0.1626, 0.1362, 0.0824, 0.0772, 0.0802, 0.1062, 0.0906, 0.072, 0.0586, 0.0548, 0.0562, 0.0544, 0.0524, 0.0642, 0.0848, 0.0878, 0.0762, 0.0716, 0.9332, 0.2206, 0.1768, 0.1384, 0.133, 0.081, 0.0614, 0.8046, 0.9464, 0.735, 0.0692, 0.0486, 0.037, 0.0362, 0.0354, 0.0352, 0.0352, 0.0356, 0.0352, 0.0352, 0.036, 0.036, 0.0376, 0.0414, 0.042, 0.041, 0.0412, 0.0446, 0.902, 0.9418, 0.853, 0.0492, 0.072, 0.0722, 0.0754, 0.0672, 0.9116, 0.9386, 0.8846, 0.3644, 0.153, 0.072, 0.0698, 0.0706, 0.0718, 0.0832, 0.088, 0.0942, 0.1002, 0.1072, 0.1346, 0.1472, 0.1708, 0.199, 0.2956, 0.3334, 0.5018, 0.9008, 0.926, 0.947, 0.9378, 0.915, 0.8882, 0.5844, 0.7908, 0.4518, 0.4224, 0.4008, 0.3908, 0.3922, 0.3924, 0.4054, 0.4266, 0.4186, 0.4178, 0.4114, 0.411, 0.416, 0.4186, 0.4292, 0.437, 0.4358, 0.4434, 0.4502, 0.4562, 0.45, 0.7818, 0.8132, 0.8364, 0.8526, 0.8708, 0.8868, 0.934, 0.9436, 0.8978, 0.8782, 0.8608, 0.845, 0.823, 0.7992, 0.7364, 0.5978, 0.5486, 0.5362, 0.5142, 0.49, 0.4834, 0.4778, 0.4744, 0.4706, 0.4694, 0.4716, 0.4692, 0.469, 0.469, 0.468, 0.4708, 0.471, 0.4932, 0.486, 0.4792, 0.48, 0.4798, 0.4802, 0.4774, 0.4816, 0.7708, 0.483, 0.48, 0.4772, 0.4772, 0.4762, 0.4748, 0.4698, 0.4698, 0.4706, 0.4718, 0.4728, 0.4744, 0.4764, 0.4798, 0.48, 0.4836, 0.4786, 0.4746, 0.4742, 0.4754, 0.4748, 0.4716, 0.4696, 0.4704, 0.4838, 0.4672, 0.4692, 0.872, 0.9186, 0.8976, 0.858, 0.4652, 0.4642, 0.4644, 0.4636, 0.4636, 0.4642, 0.4642, 0.465, 0.4664, 0.4684, 0.4722, 0.4724, 0.475, 0.4772, 0.4796, 0.4904, 0.4892, 0.4924, 0.4976, 0.9326, 0.9382, 0.9346, 0.9098, 0.5006, 0.5016, 0.5022, 0.503, 0.5046, 0.5062, 0.5084, 0.5108, 0.6122, 0.6746, 0.949, 0.5444, 0.5296, 0.5294, 0.532, 0.5364, 0.5408, 0.5432, 0.5478, 0.551, 0.5548, 0.5576, 0.5584, 0.5826, 0.6042, 0.6372, 0.6772, 0.695, 0.7678, 0.8896], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hydrolase_like.gap.json b/pfam_gap_rates/Hydrolase_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f63f48fe9ed66ef3e283814419a6080d47b9dd38
--- /dev/null
+++ b/pfam_gap_rates/Hydrolase_like.gap.json
@@ -0,0 +1 @@
+{"family": "Hydrolase_like", "n_seqs": 3980, "length": 91, "gap_rates": [0.8952261306532663, 0.1891959798994975, 0.0864321608040201, 0.04472361809045226, 0.04321608040201005, 0.04246231155778894, 0.04020100502512563, 0.036683417085427134, 0.032160804020100506, 0.02914572864321608, 0.02763819095477387, 0.027386934673366833, 0.02512562814070352, 0.024120603015075376, 0.023618090452261306, 0.0228643216080402, 0.03919597989949749, 0.8361809045226131, 0.8540201005025125, 0.8844221105527639, 0.90678391959799, 0.9273869346733669, 0.9123115577889447, 0.9010050251256282, 0.8633165829145729, 0.8447236180904523, 0.814572864321608, 0.040452261306532664, 0.03969849246231156, 0.053266331658291456, 0.9384422110552764, 0.04974874371859297, 0.012060301507537688, 0.007788944723618091, 0.00728643216080402, 0.00628140703517588, 0.002512562814070352, 0.0022613065326633165, 0.0020100502512562816, 0.0020100502512562816, 0.001507537688442211, 0.2577889447236181, 0.0010050251256281408, 0.0007537688442211055, 0.0007537688442211055, 0.001256281407035176, 0.0020100502512562816, 0.0022613065326633165, 0.0017587939698492463, 0.002512562814070352, 0.006532663316582915, 0.013819095477386936, 0.015577889447236181, 0.9482412060301507, 0.017336683417085427, 0.02386934673366834, 0.027889447236180906, 0.033165829145728645, 0.04020100502512563, 0.04874371859296482, 0.0949748743718593, 0.15452261306532664, 0.1678391959798995, 0.17587939698492464, 0.19070351758793969, 0.1972361809045226, 0.20477386934673367, 0.22613065326633167, 0.2379396984924623, 0.33969849246231154, 0.3221105527638191, 0.3964824120603015, 0.8582914572864322, 0.9419597989949748, 0.8396984924623115, 0.364070351758794, 0.3535175879396985, 0.9389447236180904, 0.34195979899497486, 0.3402010050251256, 0.34045226130653267, 0.34824120603015074, 0.3587939698492462, 0.36909547738693466, 0.378391959798995, 0.3869346733668342, 0.39597989949748746, 0.4135678391959799, 0.4515075376884422, 0.5512562814070352, 0.7962311557788945], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HypA.gap.json b/pfam_gap_rates/HypA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be08575d9f6f8a150ec4e83487b58fae38479c44
--- /dev/null
+++ b/pfam_gap_rates/HypA.gap.json
@@ -0,0 +1 @@
+{"family": "HypA", "n_seqs": 678, "length": 124, "gap_rates": [0.07227138643067847, 0.05309734513274336, 0.05309734513274336, 0.03982300884955752, 0.03982300884955752, 0.038348082595870206, 0.029498525073746312, 0.02654867256637168, 0.025073746312684365, 0.02359882005899705, 0.022123893805309734, 0.02064896755162242, 0.02064896755162242, 0.019174041297935103, 0.017699115044247787, 0.016224188790560472, 0.016224188790560472, 0.014749262536873156, 0.93952802359882, 0.11651917404129794, 0.11356932153392331, 0.13421828908554573, 0.032448377581120944, 0.022123893805309734, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.007374631268436578, 0.007374631268436578, 0.007374631268436578, 0.0058997050147492625, 0.0058997050147492625, 0.0058997050147492625, 0.004424778761061947, 0.004424778761061947, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.004424778761061947, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.0058997050147492625, 0.0058997050147492625, 0.0058997050147492625, 0.008849557522123894, 0.014749262536873156, 0.008849557522123894, 0.8156342182890856, 0.008849557522123894, 0.01032448377581121, 0.008849557522123894, 0.007374631268436578, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.01032448377581121, 0.01327433628318584, 0.017699115044247787, 0.02359882005899705, 0.028023598820058997, 0.032448377581120944, 0.03392330383480826, 0.03392330383480826, 0.03392330383480826, 0.04424778761061947, 0.04424778761061947, 0.03392330383480826, 0.03392330383480826, 0.03982300884955752, 0.03392330383480826, 0.03392330383480826, 0.03392330383480826, 0.03392330383480826, 0.03392330383480826, 0.05309734513274336, 0.9100294985250738, 0.06047197640117994, 0.8215339233038348, 0.0752212389380531, 0.03982300884955752, 0.9292035398230089, 0.9321533923303835, 0.9336283185840708, 0.9454277286135693, 0.9351032448377581, 0.9321533923303835, 0.9292035398230089, 0.9292035398230089, 0.035398230088495575, 0.03392330383480826, 0.03392330383480826, 0.09292035398230089, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.07227138643067847, 0.05457227138643068, 0.045722713864306784, 0.038348082595870206, 0.035398230088495575, 0.03687315634218289, 0.03687315634218289, 0.038348082595870206, 0.038348082595870206, 0.038348082595870206, 0.038348082595870206, 0.03982300884955752, 0.04129793510324484, 0.04424778761061947, 0.0471976401179941, 0.061946902654867256, 0.19321533923303835, 0.56047197640118], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IFT46_B_C.gap.json b/pfam_gap_rates/IFT46_B_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0197fd2e71f52caa8ded817de104e1750c0f740b
--- /dev/null
+++ b/pfam_gap_rates/IFT46_B_C.gap.json
@@ -0,0 +1 @@
+{"family": "IFT46_B_C", "n_seqs": 153, "length": 232, "gap_rates": [0.6601307189542484, 0.45098039215686275, 0.43790849673202614, 0.42483660130718953, 0.4117647058823529, 0.39869281045751637, 0.38562091503267976, 0.3660130718954248, 0.3464052287581699, 0.3202614379084967, 0.2875816993464052, 0.2679738562091503, 0.2549019607843137, 0.2549019607843137, 0.9477124183006536, 0.9477124183006536, 0.24183006535947713, 0.22875816993464052, 0.21568627450980393, 0.20261437908496732, 0.1895424836601307, 0.20261437908496732, 0.20261437908496732, 0.20261437908496732, 0.20261437908496732, 0.20261437908496732, 0.19607843137254902, 0.1895424836601307, 0.1895424836601307, 0.1895424836601307, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.19607843137254902, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.17647058823529413, 0.17647058823529413, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16339869281045752, 0.1568627450980392, 0.1568627450980392, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.1568627450980392, 0.16339869281045752, 0.17647058823529413, 0.17647058823529413, 0.9084967320261438, 0.9084967320261438, 0.9150326797385621, 0.9215686274509803, 0.934640522875817, 0.9477124183006536, 0.9215686274509803, 0.9150326797385621, 0.9084967320261438, 0.9084967320261438, 0.9084967320261438, 0.16993464052287582, 0.16993464052287582, 0.17647058823529413, 0.16993464052287582, 0.1568627450980392, 0.1568627450980392, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.16339869281045752, 0.16339869281045752, 0.16993464052287582, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16993464052287582, 0.16993464052287582, 0.17647058823529413, 0.17647058823529413, 0.1830065359477124, 0.1830065359477124, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.1830065359477124, 0.1830065359477124, 0.17647058823529413, 0.1830065359477124, 0.1895424836601307, 0.20915032679738563, 0.7843137254901961, 0.5163398692810458, 0.21568627450980393, 0.16993464052287582, 0.16339869281045752, 0.1568627450980392, 0.1830065359477124, 0.16993464052287582, 0.1568627450980392, 0.16993464052287582, 0.1895424836601307, 0.16339869281045752, 0.1503267973856209, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.1437908496732026, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.1437908496732026, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.9411764705882353, 0.20261437908496732, 0.17647058823529413, 0.1830065359477124, 0.16339869281045752, 0.16339869281045752, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.16339869281045752, 0.16993464052287582, 0.1568627450980392, 0.1568627450980392, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1568627450980392, 0.8823529411764706, 0.1503267973856209, 0.1437908496732026, 0.1437908496732026, 0.13071895424836602, 0.13725490196078433, 0.13725490196078433, 0.1568627450980392, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.1437908496732026, 0.1503267973856209, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.1437908496732026, 0.1503267973856209, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.9150326797385621, 0.934640522875817, 0.9215686274509803, 0.8758169934640523, 0.7647058823529411, 0.19607843137254902, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.1830065359477124, 0.19607843137254902, 0.20915032679738563, 0.23529411764705882, 0.26143790849673204, 0.33986928104575165, 0.47058823529411764], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IGPD.gap.json b/pfam_gap_rates/IGPD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54501629fade0f1c3cbee288e48a2f2805db9253
--- /dev/null
+++ b/pfam_gap_rates/IGPD.gap.json
@@ -0,0 +1 @@
+{"family": "IGPD", "n_seqs": 1776, "length": 148, "gap_rates": [0.10698198198198199, 0.04842342342342342, 0.026463963963963964, 0.02364864864864865, 0.02252252252252252, 0.02195945945945946, 0.020833333333333332, 0.019707207207207207, 0.015202702702702704, 0.014076576576576577, 0.014076576576576577, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.014076576576576577, 0.017454954954954954, 0.016891891891891893, 0.030405405405405407, 0.028153153153153154, 0.02533783783783784, 0.017454954954954954, 0.015765765765765764, 0.015765765765765764, 0.01463963963963964, 0.015765765765765764, 0.013513513513513514, 0.01463963963963964, 0.015202702702702704, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.014076576576576577, 0.014076576576576577, 0.012387387387387387, 0.012387387387387387, 0.012387387387387387, 0.01295045045045045, 0.01295045045045045, 0.01463963963963964, 0.0259009009009009, 0.02027027027027027, 0.015202702702702704, 0.01463963963963964, 0.013513513513513514, 0.015202702702702704, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.12837837837837837, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.01295045045045045, 0.012387387387387387, 0.012387387387387387, 0.012387387387387387, 0.012387387387387387, 0.012387387387387387, 0.012387387387387387, 0.012387387387387387, 0.01295045045045045, 0.013513513513513514, 0.014076576576576577, 0.017454954954954954, 0.01463963963963964, 0.015202702702702704, 0.015202702702702704, 0.015202702702702704, 0.01463963963963964, 0.017454954954954954, 0.017454954954954954, 0.024774774774774775, 0.02195945945945946, 0.9206081081081081, 0.9268018018018018, 0.8947072072072072, 0.02027027027027027, 0.02421171171171171, 0.03434684684684685, 0.02421171171171171, 0.02421171171171171, 0.02364864864864865, 0.018018018018018018, 0.8873873873873874, 0.02027027027027027, 0.014076576576576577, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.014076576576576577, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.015202702702702704, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.01463963963963964, 0.013513513513513514, 0.013513513513513514, 0.014076576576576577, 0.014076576576576577, 0.15653153153153154, 0.015202702702702704, 0.015765765765765764, 0.015765765765765764, 0.01632882882882883, 0.01632882882882883, 0.01632882882882883, 0.01632882882882883, 0.01632882882882883, 0.016891891891891893, 0.017454954954954954, 0.018018018018018018, 0.018018018018018018, 0.018581081081081082, 0.018581081081081082, 0.018581081081081082, 0.018581081081081082, 0.019144144144144143, 0.020833333333333332, 0.09009009009009009], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ING.gap.json b/pfam_gap_rates/ING.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fab2d3817b0daf4938f9457eaf16c04c02532f1b
--- /dev/null
+++ b/pfam_gap_rates/ING.gap.json
@@ -0,0 +1 @@
+{"family": "ING", "n_seqs": 742, "length": 148, "gap_rates": [0.5336927223719676, 0.3140161725067385, 0.23450134770889489, 0.18867924528301888, 0.16846361185983827, 0.15363881401617252, 0.14285714285714285, 0.12264150943396226, 0.1078167115902965, 0.10377358490566038, 0.10242587601078167, 0.10107816711590296, 0.10107816711590296, 0.10107816711590296, 0.09838274932614555, 0.09568733153638814, 0.09164420485175202, 0.09164420485175202, 0.09164420485175202, 0.0889487870619946, 0.0889487870619946, 0.0876010781671159, 0.07951482479784366, 0.07951482479784366, 0.08086253369272237, 0.07681940700808626, 0.07681940700808626, 0.07547169811320754, 0.07412398921832884, 0.07142857142857142, 0.07681940700808626, 0.07681940700808626, 0.07277628032345014, 0.07547169811320754, 0.07277628032345014, 0.07277628032345014, 0.07412398921832884, 0.8571428571428571, 0.8571428571428571, 0.8557951482479784, 0.07681940700808626, 0.08086253369272237, 0.08221024258760108, 0.07951482479784366, 0.08086253369272237, 0.07816711590296496, 0.07951482479784366, 0.07412398921832884, 0.7223719676549866, 0.8099730458221024, 0.8679245283018868, 0.9407008086253369, 0.8975741239892183, 0.8409703504043127, 0.7762803234501348, 0.7115902964959568, 0.21293800539083557, 0.8436657681940701, 0.8598382749326146, 0.8679245283018868, 0.8854447439353099, 0.8935309973045822, 0.8975741239892183, 0.9043126684636119, 0.9070080862533693, 0.9137466307277629, 0.9164420485175202, 0.9204851752021563, 0.9272237196765498, 0.931266846361186, 0.9393530997304582, 0.944743935309973, 0.9474393530997305, 0.9487870619946092, 0.9460916442048517, 0.9420485175202157, 0.9326145552560647, 0.9299191374663073, 0.9258760107816711, 0.9191374663072777, 0.9150943396226415, 0.9097035040431267, 0.9070080862533693, 0.9016172506738545, 0.8962264150943396, 0.8921832884097035, 0.8787061994609164, 0.8638814016172507, 0.8490566037735849, 0.8234501347708895, 0.20889487870619947, 0.18598382749326145, 0.1105121293800539, 0.09703504043126684, 0.09299191374663072, 0.09029649595687332, 0.0889487870619946, 0.08086253369272237, 0.07681940700808626, 0.07681940700808626, 0.07547169811320754, 0.07951482479784366, 0.07951482479784366, 0.07681940700808626, 0.07277628032345014, 0.931266846361186, 0.6778975741239892, 0.07277628032345014, 0.07142857142857142, 0.07142857142857142, 0.07008086253369272, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07008086253369272, 0.07142857142857142, 0.07142857142857142, 0.07277628032345014, 0.07277628032345014, 0.07412398921832884, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07681940700808626, 0.07816711590296496, 0.08086253369272237, 0.08490566037735849, 0.08490566037735849, 0.09029649595687332, 0.09433962264150944, 0.09568733153638814, 0.09838274932614555, 0.10377358490566038, 0.11859838274932614, 0.15768194070080863, 0.19946091644204852, 0.22776280323450135, 0.2803234501347709, 0.3881401617250674, 0.6172506738544474], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/I_LWEQ.gap.json b/pfam_gap_rates/I_LWEQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00438e5e356d39ba1012551e1160e7128b9d99d8
--- /dev/null
+++ b/pfam_gap_rates/I_LWEQ.gap.json
@@ -0,0 +1 @@
+{"family": "I_LWEQ", "n_seqs": 419, "length": 158, "gap_rates": [0.4105011933174224, 0.39856801909307876, 0.2100238663484487, 0.13842482100238662, 0.1288782816229117, 0.11933174224343675, 0.1026252983293556, 0.0883054892601432, 0.06682577565632458, 0.06205250596658711, 0.05250596658711217, 0.05250596658711217, 0.05250596658711217, 0.050119331742243436, 0.045346062052505964, 0.045346062052505964, 0.045346062052505964, 0.03818615751789976, 0.03579952267303103, 0.03341288782816229, 0.031026252983293555, 0.031026252983293555, 0.031026252983293555, 0.031026252983293555, 0.031026252983293555, 0.026252983293556086, 0.01909307875894988, 0.01909307875894988, 0.021479713603818614, 0.021479713603818614, 0.021479713603818614, 0.028639618138424822, 0.03341288782816229, 0.03341288782816229, 0.031026252983293555, 0.026252983293556086, 0.8329355608591885, 0.8496420047732697, 0.8090692124105012, 0.021479713603818614, 0.01909307875894988, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.01909307875894988, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.01909307875894988, 0.01909307875894988, 0.01909307875894988, 0.01909307875894988, 0.01909307875894988, 0.01909307875894988, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.016706443914081145, 0.02386634844868735, 0.026252983293556086, 0.026252983293556086, 0.026252983293556086, 0.02386634844868735, 0.03579952267303103, 0.03341288782816229, 0.9474940334128878, 0.03818615751789976, 0.03579952267303103, 0.03579952267303103, 0.9021479713603818, 0.02386634844868735, 0.02386634844868735, 0.02386634844868735, 0.02386634844868735, 0.01909307875894988, 0.01909307875894988, 0.01909307875894988, 0.01909307875894988, 0.01909307875894988, 0.021479713603818614, 0.021479713603818614, 0.021479713603818614, 0.021479713603818614, 0.021479713603818614, 0.021479713603818614, 0.021479713603818614, 0.021479713603818614, 0.026252983293556086, 0.02386634844868735, 0.026252983293556086, 0.026252983293556086, 0.028639618138424822, 0.028639618138424822, 0.028639618138424822, 0.031026252983293555, 0.03579952267303103, 0.06205250596658711, 0.09307875894988067, 0.11455847255369929, 0.43675417661097854, 0.8210023866348448, 0.7875894988066826, 0.6706443914081146, 0.4200477326968974, 0.3412887828162291, 0.3198090692124105, 0.3126491646778043, 0.31026252983293556, 0.14081145584725538, 0.13842482100238662, 0.14558472553699284, 0.14081145584725538, 0.14081145584725538, 0.13842482100238662, 0.13842482100238662, 0.13842482100238662, 0.14081145584725538, 0.14081145584725538, 0.1431980906921241, 0.14558472553699284, 0.14558472553699284, 0.14558472553699284, 0.14558472553699284, 0.14558472553699284, 0.14797136038186157, 0.15274463007159905, 0.15274463007159905, 0.16467780429594273, 0.16467780429594273, 0.16945107398568018, 0.16706443914081145, 0.16706443914081145, 0.16945107398568018, 0.16945107398568018, 0.16945107398568018, 0.1718377088305489, 0.1718377088305489, 0.17422434367541767, 0.17422434367541767, 0.17422434367541767, 0.17422434367541767, 0.17422434367541767, 0.17422434367541767, 0.18615751789976134, 0.1909307875894988, 0.1957040572792363, 0.19809069212410502, 0.21241050119331742, 0.22673031026252982, 0.2386634844868735, 0.36992840095465396], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IclR.gap.json b/pfam_gap_rates/IclR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e6326ff3896540a3fd30ebe1ecb9160b9c9aadf
--- /dev/null
+++ b/pfam_gap_rates/IclR.gap.json
@@ -0,0 +1 @@
+{"family": "IclR", "n_seqs": 3975, "length": 128, "gap_rates": [0.9033962264150943, 0.6729559748427673, 0.5247798742138364, 0.4070440251572327, 0.31522012578616354, 0.21559748427672956, 0.15572327044025158, 0.11547169811320755, 0.09937106918238994, 0.09106918238993711, 0.07748427672955975, 0.06842767295597484, 0.061635220125786164, 0.05710691823899371, 0.05308176100628931, 0.050314465408805034, 0.04905660377358491, 0.048050314465408805, 0.048050314465408805, 0.046037735849056606, 0.045534591194968554, 0.04427672955974843, 0.0440251572327044, 0.04377358490566038, 0.043270440251572326, 0.042767295597484274, 0.042767295597484274, 0.0649056603773585, 0.054842767295597485, 0.05509433962264151, 0.05635220125786163, 0.052578616352201256, 0.04905660377358491, 0.050566037735849056, 0.04930817610062893, 0.04855345911949686, 0.04880503144654088, 0.050314465408805034, 0.9371069182389937, 0.38440251572327044, 0.18867924528301888, 0.1469182389937107, 0.11119496855345912, 0.10062893081761007, 0.08628930817610063, 0.08352201257861636, 0.08251572327044025, 0.07823899371069182, 0.07849056603773585, 0.08176100628930817, 0.0789937106918239, 0.15371069182389938, 0.1129559748427673, 0.09685534591194969, 0.08679245283018867, 0.0850314465408805, 0.07044025157232704, 0.059622641509433964, 0.03949685534591195, 0.03320754716981132, 0.024654088050314465, 0.015345911949685535, 0.015345911949685535, 0.014339622641509434, 0.012327044025157233, 0.011069182389937107, 0.00930817610062893, 0.00830188679245283, 0.008050314465408805, 0.00779874213836478, 0.00779874213836478, 0.00779874213836478, 0.008553459119496854, 0.010817610062893081, 0.009559748427672956, 0.00880503144654088, 0.008050314465408805, 0.007547169811320755, 0.0060377358490566035, 0.006540880503144654, 0.00779874213836478, 0.0060377358490566035, 0.005534591194968554, 0.0060377358490566035, 0.006792452830188679, 0.009559748427672956, 0.011572327044025157, 0.013584905660377358, 0.13559748427672955, 0.03949685534591195, 0.013081761006289308, 0.01509433962264151, 0.015345911949685535, 0.01459119496855346, 0.012830188679245283, 0.011823899371069183, 0.011823899371069183, 0.012075471698113207, 0.013584905660377358, 0.013584905660377358, 0.016855345911949687, 0.02188679245283019, 0.027421383647798742, 0.03295597484276729, 0.041257861635220126, 0.04628930817610063, 0.04981132075471698, 0.057358490566037736, 0.06088050314465409, 0.06716981132075471, 0.06842767295597484, 0.07446540880503144, 0.08654088050314465, 0.7471698113207547, 0.1660377358490566, 0.1210062893081761, 0.12, 0.11018867924528301, 0.09610062893081761, 0.10566037735849057, 0.11396226415094339, 0.13132075471698113, 0.15119496855345912, 0.16880503144654088, 0.1932075471698113, 0.22465408805031448, 0.3368553459119497, 0.5735849056603773], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Inhibitor_I29.gap.json b/pfam_gap_rates/Inhibitor_I29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c68dd0a8fbada6e423e6f78cdccfb306b2ff5fdd
--- /dev/null
+++ b/pfam_gap_rates/Inhibitor_I29.gap.json
@@ -0,0 +1 @@
+{"family": "Inhibitor_I29", "n_seqs": 2310, "length": 61, "gap_rates": [0.1432900432900433, 0.1038961038961039, 0.08311688311688312, 0.07316017316017316, 0.06363636363636363, 0.06017316017316017, 0.05367965367965368, 0.048917748917748916, 0.04632034632034632, 0.04458874458874459, 0.04458874458874459, 0.04112554112554113, 0.24632034632034633, 0.03896103896103896, 0.03116883116883117, 0.02683982683982684, 0.021645021645021644, 0.01774891774891775, 0.015584415584415584, 0.011688311688311689, 0.011255411255411256, 0.012121212121212121, 0.007792207792207792, 0.005627705627705628, 0.003896103896103896, 0.003896103896103896, 0.0021645021645021645, 0.0012987012987012987, 0.0017316017316017316, 0.0021645021645021645, 0.0017316017316017316, 0.0017316017316017316, 0.0021645021645021645, 0.0021645021645021645, 0.0012987012987012987, 0.003896103896103896, 0.7523809523809524, 0.7766233766233767, 0.7168831168831169, 0.396969696969697, 0.03593073593073593, 0.020346320346320345, 0.01818181818181818, 0.018614718614718615, 0.01645021645021645, 0.021212121212121213, 0.016883116883116882, 0.011255411255411256, 0.010822510822510822, 0.010822510822510822, 0.010822510822510822, 0.011688311688311689, 0.012987012987012988, 0.014285714285714285, 0.014285714285714285, 0.020346320346320345, 0.03506493506493506, 0.04329004329004329, 0.04935064935064935, 0.06406926406926407, 0.22164502164502164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Integrin_B_tail.gap.json b/pfam_gap_rates/Integrin_B_tail.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae330c11ee348376c8217a209976eff71d953bd2
--- /dev/null
+++ b/pfam_gap_rates/Integrin_B_tail.gap.json
@@ -0,0 +1 @@
+{"family": "Integrin_B_tail", "n_seqs": 182, "length": 94, "gap_rates": [0.08241758241758242, 0.08241758241758242, 0.07692307692307693, 0.07142857142857142, 0.07142857142857142, 0.06593406593406594, 0.06593406593406594, 0.06043956043956044, 0.06043956043956044, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.3516483516483517, 0.7637362637362637, 0.054945054945054944, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.35714285714285715, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.5384615384615384, 0.0989010989010989, 0.04945054945054945, 0.04945054945054945, 0.09340659340659341, 0.08241758241758242, 0.06593406593406594, 0.054945054945054944, 0.04945054945054945, 0.054945054945054944, 0.07142857142857142, 0.06593406593406594, 0.1043956043956044, 0.09340659340659341, 0.12637362637362637, 0.8516483516483516, 0.8681318681318682, 0.8736263736263736, 0.8626373626373627, 0.6868131868131868, 0.17582417582417584, 0.038461538461538464, 0.016483516483516484, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.027472527472527472, 0.7692307692307693, 0.016483516483516484, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.9120879120879121, 0.6923076923076923, 0.06593406593406594, 0.016483516483516484, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.016483516483516484, 0.02197802197802198, 0.016483516483516484, 0.016483516483516484, 0.02197802197802198, 0.038461538461538464, 0.038461538461538464, 0.04945054945054945, 0.09340659340659341, 0.27472527472527475, 0.46703296703296704, 0.6098901098901099], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Integrin_alpha2.gap.json b/pfam_gap_rates/Integrin_alpha2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b420301e04752a2ade914f4d07a241f728a463d5
--- /dev/null
+++ b/pfam_gap_rates/Integrin_alpha2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/JHBP.gap.json b/pfam_gap_rates/JHBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40cbfec901a43da567e92d5734a37553646c5c1f
--- /dev/null
+++ b/pfam_gap_rates/JHBP.gap.json
@@ -0,0 +1 @@
+{"family": "JHBP", "n_seqs": 632, "length": 249, "gap_rates": [0.9224683544303798, 0.8275316455696202, 0.7642405063291139, 0.7231012658227848, 0.685126582278481, 0.6867088607594937, 0.6835443037974683, 0.7088607594936709, 0.6819620253164557, 0.9034810126582279, 0.944620253164557, 0.8433544303797469, 0.6993670886075949, 0.5981012658227848, 0.5664556962025317, 0.5537974683544303, 0.5411392405063291, 0.5221518987341772, 0.5031645569620253, 0.5079113924050633, 0.4541139240506329, 0.42563291139240506, 0.40822784810126583, 0.3876582278481013, 0.375, 0.375, 0.37341772151898733, 0.36075949367088606, 0.37341772151898733, 0.4525316455696203, 0.43670886075949367, 0.4177215189873418, 0.30537974683544306, 0.2990506329113924, 0.28955696202531644, 0.27848101265822783, 0.27531645569620256, 0.2721518987341772, 0.2689873417721519, 0.26582278481012656, 0.26424050632911394, 0.2610759493670886, 0.2563291139240506, 0.25316455696202533, 0.25158227848101267, 0.25, 0.24208860759493672, 0.2389240506329114, 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\ No newline at end of file
diff --git a/pfam_gap_rates/KA1.gap.json b/pfam_gap_rates/KA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95f198c4b9712f1e3af73b1eed11388bbc9cf201
--- /dev/null
+++ b/pfam_gap_rates/KA1.gap.json
@@ -0,0 +1 @@
+{"family": "KA1", "n_seqs": 578, "length": 46, "gap_rates": [0.513840830449827, 0.14705882352941177, 0.10207612456747404, 0.0986159169550173, 0.06747404844290658, 0.06228373702422145, 0.050173010380622836, 0.04498269896193772, 0.04498269896193772, 0.04325259515570934, 0.04498269896193772, 0.04498269896193772, 0.04671280276816609, 0.029411764705882353, 0.015570934256055362, 0.9429065743944637, 0.8062283737024222, 0.15570934256055363, 0.005190311418685121, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0017301038062283738, 0.006920415224913495, 0.010380622837370242, 0.012110726643598616, 0.012110726643598616, 0.012110726643598616, 0.01384083044982699, 0.01384083044982699, 0.01903114186851211, 0.02422145328719723, 0.02768166089965398, 0.029411764705882353, 0.031141868512110725, 0.0328719723183391, 0.058823529411764705, 0.08996539792387544, 0.13321799307958476, 0.18685121107266436, 0.2508650519031142, 0.4134948096885813], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KAR9.gap.json b/pfam_gap_rates/KAR9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..707ecf94e99cf6b5d5d20b42f744906a34042058
--- /dev/null
+++ b/pfam_gap_rates/KAR9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/KCH.gap.json b/pfam_gap_rates/KCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f8c7728c2a4346c3a09ed8ca24daf31c655bb0f
--- /dev/null
+++ b/pfam_gap_rates/KCH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/KH_2.gap.json b/pfam_gap_rates/KH_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58c658f3a6dfdb3b7e4f11496e3a28619e6dd794
--- /dev/null
+++ b/pfam_gap_rates/KH_2.gap.json
@@ -0,0 +1 @@
+{"family": "KH_2", "n_seqs": 4753, "length": 86, "gap_rates": [0.29434041657900273, 0.07426888281085631, 0.056175047338523035, 0.050915211445402904, 0.048600883652430045, 0.04334104775930991, 0.042078687144961074, 0.03787081843046497, 0.0351357037660425, 0.031138228487271196, 0.6579002735114664, 0.029034294130023144, 0.9417210183042289, 0.027982326951399118, 0.028823900694298337, 0.021249737008205344, 0.7574163686092994, 0.9478224279402483, 0.884283610351357, 0.6604249947401641, 0.014727540500736377, 0.012413212707763518, 0.012202819272038713, 0.011571638964864297, 0.011150852093414685, 0.009888491479065854, 0.3986955606985062, 0.40037870818430465, 0.41910372396381235, 0.41131916684199454, 0.010098884914790659, 0.009467704607616242, 0.004207868714496108, 0.00273511466442247, 0.0018935409215232485, 0.0014727540500736377, 0.0012623606143488324, 0.001051967178624027, 0.001051967178624027, 0.001051967178624027, 0.0008415737428992215, 0.0008415737428992215, 0.0008415737428992215, 0.00021039343572480537, 0.00021039343572480537, 0.00021039343572480537, 0.00042078687144961075, 0.0008415737428992215, 0.0008415737428992215, 0.0006311803071744162, 0.0006311803071744162, 0.0006311803071744162, 0.0006311803071744162, 0.0006311803071744162, 0.0006311803071744162, 0.001051967178624027, 0.001051967178624027, 0.0012623606143488324, 0.0014727540500736377, 0.001683147485798443, 0.0025247212286976647, 0.0031559015358720807, 0.003787081843046497, 0.003997475278771302, 0.44014306753629284, 0.4748579844308858, 0.4052177572059752, 0.39659162634125816, 0.01641068798653482, 0.017673048600883652, 0.01598990111508521, 0.9490847885545971, 0.018725015779507678, 0.021039343572480537, 0.033662949715968865, 0.035977277508941724, 0.027561540079949504, 0.030717441615821586, 0.5823690300862613, 0.034504523458868085, 0.04018514622343783, 0.04733852303808121, 0.06395960446034084, 0.14306753629286767, 0.203240058910162, 0.6105617504733852], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KH_6.gap.json b/pfam_gap_rates/KH_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b06ffd002801607b0e531d2030f985522e8b1e0e
--- /dev/null
+++ b/pfam_gap_rates/KH_6.gap.json
@@ -0,0 +1 @@
+{"family": "KH_6", "n_seqs": 589, "length": 57, "gap_rates": [0.050933786078098474, 0.042444821731748725, 0.028862478777589132, 0.022071307300509338, 0.01867572156196944, 0.015280135823429542, 0.011884550084889643, 0.011884550084889643, 0.011884550084889643, 0.011884550084889643, 0.010186757215619695, 0.010186757215619695, 0.0050933786078098476, 0.006791171477079796, 0.0050933786078098476, 0.4634974533106961, 0.7453310696095077, 0.8862478777589134, 0.9049235993208828, 0.9083191850594228, 0.8964346349745331, 0.8692699490662139, 0.4702886247877759, 0.4567062818336163, 0.003395585738539898, 0.001697792869269949, 0.0, 0.4142614601018676, 0.001697792869269949, 0.001697792869269949, 0.0, 0.011884550084889643, 0.028862478777589132, 0.07809847198641766, 0.9151103565365025, 0.9286926994906621, 0.8387096774193549, 0.29541595925297115, 0.2699490662139219, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001697792869269949, 0.001697792869269949, 0.006791171477079796, 0.015280135823429542, 0.05432937181663837, 0.1494057724957555, 0.2699490662139219, 0.5382003395585738], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KIAA1430.gap.json b/pfam_gap_rates/KIAA1430.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5bf7fa24c7fb4fa0a445945f0335726090560eb
--- /dev/null
+++ b/pfam_gap_rates/KIAA1430.gap.json
@@ -0,0 +1 @@
+{"family": "KIAA1430", "n_seqs": 296, "length": 145, "gap_rates": [0.40878378378378377, 0.36824324324324326, 0.30405405405405406, 0.24324324324324326, 0.23648648648648649, 0.22635135135135134, 0.21621621621621623, 0.19932432432432431, 0.19256756756756757, 0.18243243243243243, 0.17905405405405406, 0.9459459459459459, 0.9459459459459459, 0.9391891891891891, 0.17567567567567569, 0.17567567567567569, 0.16891891891891891, 0.16554054054054054, 0.16216216216216217, 0.1554054054054054, 0.16891891891891891, 0.19932432432432431, 0.20945945945945946, 0.1891891891891892, 0.19932432432432431, 0.8412162162162162, 0.9459459459459459, 0.8918918918918919, 0.7972972972972973, 0.09797297297297297, 0.09121621621621621, 0.07432432432432433, 0.06418918918918919, 0.05405405405405406, 0.04391891891891892, 0.037162162162162164, 0.037162162162162164, 0.02702702702702703, 0.02364864864864865, 0.013513513513513514, 0.006756756756756757, 0.9425675675675675, 0.02027027027027027, 0.013513513513513514, 0.010135135135135136, 0.010135135135135136, 0.006756756756756757, 0.006756756756756757, 0.010135135135135136, 0.010135135135135136, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.013513513513513514, 0.010135135135135136, 0.010135135135135136, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.010135135135135136, 0.16554054054054054, 0.34459459459459457, 0.6182432432432432, 0.7128378378378378, 0.777027027027027, 0.8141891891891891, 0.831081081081081, 0.8547297297297297, 0.8885135135135135, 0.902027027027027, 0.9256756756756757, 0.9391891891891891, 0.9493243243243243, 0.9493243243243243, 0.9425675675675675, 0.9290540540540541, 0.9155405405405406, 0.8986486486486487, 0.8716216216216216, 0.8412162162162162, 0.8277027027027027, 0.7837837837837838, 0.7533783783783784, 0.6858108108108109, 0.5844594594594594, 0.4222972972972973, 0.4560810810810811, 0.40202702702702703, 0.47297297297297297, 0.36824324324324326, 0.2905405405405405, 0.22635135135135134, 0.19932432432432431, 0.18243243243243243, 0.13175675675675674, 0.13513513513513514, 0.16216216216216217, 0.1891891891891892, 0.15878378378378377, 0.15202702702702703, 0.16554054054054054, 0.17567567567567569, 0.11824324324324324, 0.8412162162162162, 0.9155405405405406, 0.9290540540540541, 0.9391891891891891, 0.9391891891891891, 0.9493243243243243, 0.9391891891891891, 0.9391891891891891, 0.9324324324324325, 0.9256756756756757, 0.8885135135135135, 0.8378378378378378, 0.19594594594594594, 0.15202702702702703, 0.125, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.11148648648648649, 0.11148648648648649, 0.11824324324324324, 0.12162162162162163, 0.12162162162162163, 0.125, 0.125, 0.125, 0.125, 0.125, 0.13513513513513514, 0.14864864864864866, 0.15202702702702703, 0.15202702702702703, 0.15878378378378377, 0.17567567567567569, 0.17905405405405406, 0.5912162162162162], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Kringle.gap.json b/pfam_gap_rates/Kringle.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d232700ae6f2b4b06cff902c4cd492344f65d82a
--- /dev/null
+++ b/pfam_gap_rates/Kringle.gap.json
@@ -0,0 +1 @@
+{"family": "Kringle", "n_seqs": 1267, "length": 85, "gap_rates": [0.3606945540647198, 0.3472770323599053, 0.2865035516969219, 0.22099447513812154, 0.1499605367008682, 0.13338595106550907, 0.10655090765588003, 0.08602999210734018, 0.0749802683504341, 0.07419100236779795, 0.07261247040252565, 0.0718232044198895, 0.06471981057616416, 0.05919494869771113, 0.0702446724546172, 0.06550907655880031, 0.06629834254143646, 0.056037884767166535, 0.042620363062352014, 0.04025256511444357, 0.036306235201262825, 0.03235990528808208, 0.03235990528808208, 0.03157063930544594, 0.03157063930544594, 0.03157063930544594, 0.03157063930544594, 0.03314917127071823, 0.036306235201262825, 0.03946329913180742, 0.042620363062352014, 0.04577742699289661, 0.27466456195737965, 0.20126282557221783, 0.13970007892659828, 0.5911602209944752, 0.2217837411207577, 0.17758484609313338, 0.14601420678768745, 0.15943172849250198, 0.11838989739542226, 0.07655880031570639, 0.06629834254143646, 0.055248618784530384, 0.04419889502762431, 0.028413575374901343, 0.014206787687450671, 0.011838989739542225, 0.9013417521704814, 0.9265982636148382, 0.7647987371744278, 0.011049723756906077, 0.011838989739542225, 0.011838989739542225, 0.011049723756906077, 0.012628255722178374, 0.014206787687450671, 0.01499605367008682, 0.017363851617995266, 0.01973164956590371, 0.018942383583267563, 0.017363851617995266, 0.5595895816890292, 0.018153117600631413, 0.018153117600631413, 0.01973164956590371, 0.021310181531176007, 0.021310181531176007, 0.9313338595106551, 0.8255722178374112, 0.02920284135753749, 0.04498816101026046, 0.04577742699289661, 0.05367008681925809, 0.0734017363851618, 0.08681925808997633, 0.062352012628255724, 0.04656669297553275, 0.04814522494080505, 0.04656669297553275, 0.06945540647198106, 0.08602999210734018, 0.1468034727703236, 0.18232044198895028, 0.18389897395422258], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/L6_membrane.gap.json b/pfam_gap_rates/L6_membrane.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..657d529a535981ff07570cee8bf954b8be9fff79
--- /dev/null
+++ b/pfam_gap_rates/L6_membrane.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LAM_C.gap.json b/pfam_gap_rates/LAM_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99d07b81fad7c49e0fbb6749d860713ff2f0251e
--- /dev/null
+++ b/pfam_gap_rates/LAM_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LANC_like.gap.json b/pfam_gap_rates/LANC_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eaf994b65f8c76599e82f04eb706caa3c79307c4
--- /dev/null
+++ b/pfam_gap_rates/LANC_like.gap.json
@@ -0,0 +1 @@
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"-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LEM.gap.json b/pfam_gap_rates/LEM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f45e5e41797d77954fa75367034a0587c2c53610
--- /dev/null
+++ b/pfam_gap_rates/LEM.gap.json
@@ -0,0 +1 @@
+{"family": "LEM", "n_seqs": 263, "length": 40, "gap_rates": [0.6768060836501901, 0.46387832699619774, 0.29277566539923955, 0.22813688212927757, 0.1482889733840304, 0.12167300380228137, 0.07604562737642585, 0.03802281368821293, 0.06463878326996197, 0.011406844106463879, 0.011406844106463879, 0.0076045627376425855, 0.0076045627376425855, 0.0038022813688212928, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0076045627376425855, 0.0076045627376425855, 0.0, 0.0, 0.0076045627376425855, 0.015209125475285171, 0.019011406844106463, 0.015209125475285171, 0.015209125475285171, 0.015209125475285171, 0.019011406844106463, 0.019011406844106463, 0.045627376425855515, 0.053231939163498096, 0.053231939163498096, 0.06463878326996197, 0.17110266159695817, 0.39923954372623577, 0.6463878326996197], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LGFP.gap.json b/pfam_gap_rates/LGFP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b45bfaf60df1bb008be45dcec95a2958b47e2c1
--- /dev/null
+++ b/pfam_gap_rates/LGFP.gap.json
@@ -0,0 +1 @@
+{"family": "LGFP", "n_seqs": 844, "length": 58, "gap_rates": [0.32109004739336494, 0.13033175355450238, 0.09597156398104266, 0.08293838862559241, 0.07582938388625593, 0.06753554502369669, 0.05924170616113744, 0.0509478672985782, 0.08412322274881516, 0.08530805687203792, 0.933649289099526, 0.43483412322274884, 0.31990521327014215, 0.03317535545023697, 0.037914691943127965, 0.024881516587677725, 0.018957345971563982, 0.9052132701421801, 0.015402843601895734, 0.015402843601895734, 0.013033175355450236, 0.008293838862559242, 0.005924170616113744, 0.0071090047393364926, 0.004739336492890996, 0.9383886255924171, 0.005924170616113744, 0.9395734597156398, 0.004739336492890996, 0.001184834123222749, 0.005924170616113744, 0.0035545023696682463, 0.014218009478672985, 0.014218009478672985, 0.06398104265402843, 0.034360189573459717, 0.03317535545023697, 0.0533175355450237, 0.06042654028436019, 0.07345971563981042, 0.09360189573459715, 0.8981042654028436, 0.11018957345971564, 0.12085308056872038, 0.12914691943127962, 0.13033175355450238, 0.13033175355450238, 0.1338862559241706, 0.1338862559241706, 0.13507109004739337, 0.1386255924170616, 0.14691943127962084, 0.15876777251184834, 0.17180094786729858, 0.19194312796208532, 0.24052132701421802, 0.31161137440758296, 0.4537914691943128], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LMF1.gap.json b/pfam_gap_rates/LMF1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3cfaf90171c5847bf4ca44b550b0c034baeda801
--- /dev/null
+++ b/pfam_gap_rates/LMF1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LNS2.gap.json b/pfam_gap_rates/LNS2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5a185d88fc436ee5a314e7a4a6e3dfb18f181fb
--- /dev/null
+++ b/pfam_gap_rates/LNS2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LON_substr_bdg.gap.json b/pfam_gap_rates/LON_substr_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fc60424565e6315a9e9687df391f0c098c0d741
--- /dev/null
+++ b/pfam_gap_rates/LON_substr_bdg.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LOR.gap.json b/pfam_gap_rates/LOR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c608fd56c542d150daa00ae8634d8ee36f7ae2e
--- /dev/null
+++ b/pfam_gap_rates/LOR.gap.json
@@ -0,0 +1 @@
+{"family": "LOR", "n_seqs": 739, "length": 201, "gap_rates": [0.9039242219215156, 0.7929634641407307, 0.7483085250338295, 0.7144790257104194, 0.6711772665764547, 0.6427604871447903, 0.618403247631935, 0.6048714479025711, 0.5520974289580515, 0.4884979702300406, 0.4479025710419486, 0.39783491204330174, 0.36265223274695535, 0.32205683355886333, 0.3004059539918809, 0.29093369418132614, 0.2679296346414073, 0.33288227334235454, 0.2489851150202977, 0.23410013531799728, 0.23004059539918809, 0.2259810554803789, 0.20974289580514208, 0.2124492557510149, 0.20974289580514208, 0.16779431664411368, 0.10825439783491204, 0.09878213802435724, 0.10148849797023005, 0.09742895805142084, 0.09472259810554803, 0.09336941813261164, 0.09336941813261164, 0.09336941813261164, 0.09336941813261164, 0.09336941813261164, 0.09201623815967523, 0.09066305818673884, 0.08795669824086604, 0.08795669824086604, 0.08930987821380243, 0.08930987821380243, 0.08930987821380243, 0.08795669824086604, 0.939106901217862, 0.7496617050067659, 0.6427604871447903, 0.3112313937753721, 0.2449255751014885, 0.11502029769959404, 0.09201623815967523, 0.08795669824086604, 0.08795669824086604, 0.08930987821380243, 0.09201623815967523, 0.08930987821380243, 0.08930987821380243, 0.08930987821380243, 0.08254397834912043, 0.08660351826792964, 0.08254397834912043, 0.08119079837618404, 0.08254397834912043, 0.08254397834912043, 0.07983761840324763, 0.08119079837618404, 0.08119079837618404, 0.08119079837618404, 0.07848443843031123, 0.07713125845737483, 0.07577807848443843, 0.13261163734776726, 0.9161028416779432, 0.93234100135318, 0.939106901217862, 0.9282814614343707, 0.8876860622462788, 0.10690121786197564, 0.10690121786197564, 0.08254397834912043, 0.07983761840324763, 0.07307171853856563, 0.07036535859269283, 0.07442489851150202, 0.11231393775372124, 0.08930987821380243, 0.08389715832205684, 0.08119079837618404, 0.07577807848443843, 0.07577807848443843, 0.07307171853856563, 0.07307171853856563, 0.08119079837618404, 0.4614343707713126, 0.4912043301759134, 0.8470906630581867, 0.9093369418132612, 0.9282814614343707, 0.8822733423545331, 0.8281461434370772, 0.435723951285521, 0.401894451962111, 0.30581867388362655, 0.11637347767253045, 0.08660351826792964, 0.08660351826792964, 0.08795669824086604, 0.08795669824086604, 0.08930987821380243, 0.09336941813261164, 0.8809201623815968, 0.4749661705006766, 0.435723951285521, 0.40730717185385656, 0.40054127198917455, 0.44248985115020295, 0.4370771312584574, 0.4208389715832206, 0.40730717185385656, 0.30987821380243574, 0.21109607577807848, 0.16914749661705006, 0.15561569688768606, 0.14208389715832206, 0.12990527740189445, 0.33964817320703655, 0.3166441136671177, 0.2462787550744249, 0.2638700947225981, 0.41271989174560214, 0.6725304465493911, 0.6035182679296346, 0.4871447902571042, 0.3261163734776725, 0.2381596752368065, 0.10690121786197564, 0.09607577807848444, 0.09472259810554803, 0.11772665764546685, 0.09607577807848444, 0.09336941813261164, 0.09336941813261164, 0.09878213802435724, 0.09742895805142084, 0.09201623815967523, 0.09878213802435724, 0.09201623815967523, 0.08660351826792964, 0.08525033829499323, 0.08389715832205684, 0.08254397834912043, 0.08254397834912043, 0.08254397834912043, 0.08254397834912043, 0.33288227334235454, 0.7185385656292287, 0.08119079837618404, 0.07848443843031123, 0.07848443843031123, 0.07713125845737483, 0.07713125845737483, 0.07713125845737483, 0.08389715832205684, 0.07848443843031123, 0.08389715832205684, 0.09472259810554803, 0.38294993234100133, 0.39783491204330174, 0.39918809201623817, 0.42354533152909335, 0.7794316644113667, 0.4059539918809202, 0.17726657645466848, 0.16102841677943167, 0.15020297699594046, 0.11907983761840325, 0.10690121786197564, 0.10013531799729364, 0.09878213802435724, 0.10013531799729364, 0.09607577807848444, 0.09742895805142084, 0.09742895805142084, 0.09742895805142084, 0.09742895805142084, 0.09878213802435724, 0.10013531799729364, 0.10148849797023005, 0.10960757780784844, 0.12313937753721245, 0.12043301759133965, 0.13125845737483086, 0.13667117726657646, 0.14343707713125844, 0.14884979702300405, 0.15290933694181327, 0.15561569688768606, 0.16238159675236807, 0.17185385656292287, 0.20974289580514208, 0.46820027063599456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRRC37.gap.json b/pfam_gap_rates/LRRC37.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..665d6f70142bd032715accac9771c6b1243580d8
--- /dev/null
+++ b/pfam_gap_rates/LRRC37.gap.json
@@ -0,0 +1 @@
+{"family": "LRRC37", "n_seqs": 101, "length": 88, "gap_rates": [0.7425742574257426, 0.6831683168316832, 0.5445544554455446, 0.48514851485148514, 0.39603960396039606, 0.40594059405940597, 0.38613861386138615, 0.37623762376237624, 0.3465346534653465, 0.33663366336633666, 0.32673267326732675, 0.31683168316831684, 0.31683168316831684, 0.3069306930693069, 0.297029702970297, 0.33663366336633666, 0.3564356435643564, 0.3069306930693069, 0.21782178217821782, 0.2079207920792079, 0.2079207920792079, 0.297029702970297, 0.15841584158415842, 0.9306930693069307, 0.9405940594059405, 0.9405940594059405, 0.9405940594059405, 0.9405940594059405, 0.9405940594059405, 0.9405940594059405, 0.9306930693069307, 0.9306930693069307, 0.297029702970297, 0.21782178217821782, 0.1188118811881188, 0.10891089108910891, 0.10891089108910891, 0.1188118811881188, 0.09900990099009901, 0.09900990099009901, 0.1188118811881188, 0.12871287128712872, 0.12871287128712872, 0.09900990099009901, 0.18811881188118812, 0.13861386138613863, 0.9108910891089109, 0.9207920792079208, 0.9207920792079208, 0.9207920792079208, 0.9207920792079208, 0.9108910891089109, 0.09900990099009901, 0.10891089108910891, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.1485148514851485, 0.0297029702970297, 0.04950495049504951, 0.0594059405940594, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.04950495049504951, 0.0594059405940594, 0.04950495049504951, 0.04950495049504951, 0.06930693069306931, 0.07920792079207921, 0.0891089108910891, 0.10891089108910891, 0.12871287128712872, 0.15841584158415842, 0.19801980198019803, 0.24752475247524752, 0.49504950495049505], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRRCT.gap.json b/pfam_gap_rates/LRRCT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cef183a43ad53195033761434c9891359bfad7d
--- /dev/null
+++ b/pfam_gap_rates/LRRCT.gap.json
@@ -0,0 +1 @@
+{"family": "LRRCT", "n_seqs": 503, "length": 27, "gap_rates": [0.7534791252485089, 0.09145129224652088, 0.027833001988071572, 0.003976143141153081, 0.003976143141153081, 0.0019880715705765406, 0.0019880715705765406, 0.0019880715705765406, 0.0, 0.0, 0.0, 0.0, 0.15904572564612326, 0.0, 0.0019880715705765406, 0.02385685884691849, 0.033797216699801194, 0.039761431411530816, 0.04572564612326044, 0.06759443339960239, 0.805168986083499, 0.08946322067594434, 0.09542743538767395, 0.09542743538767395, 0.09940357852882704, 0.10139165009940358, 0.41749502982107356], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRR_2.gap.json b/pfam_gap_rates/LRR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2ad7cd3f3ff6727fbe76c2b10f8930b6ab016d7
--- /dev/null
+++ b/pfam_gap_rates/LRR_2.gap.json
@@ -0,0 +1 @@
+{"family": "LRR_2", "n_seqs": 412, "length": 28, "gap_rates": [0.16990291262135923, 0.02912621359223301, 0.01699029126213592, 0.0048543689320388345, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.024271844660194174, 0.9466019417475728, 0.8640776699029126, 0.01699029126213592, 0.0, 0.0024271844660194173, 0.2936893203883495, 0.08495145631067962, 0.0048543689320388345, 0.007281553398058253, 0.009708737864077669, 0.01699029126213592, 0.04854368932038835, 0.06067961165048544, 0.06067961165048544, 0.06553398058252427, 0.1553398058252427], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRR_4.gap.json b/pfam_gap_rates/LRR_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d950170239308902c0f3250128c147ea96e27fb6
--- /dev/null
+++ b/pfam_gap_rates/LRR_4.gap.json
@@ -0,0 +1 @@
+{"family": "LRR_4", "n_seqs": 3013, "length": 48, "gap_rates": [0.544971788914703, 0.11948224361101892, 0.031530036508463324, 0.015930965814802522, 0.004646531695984069, 0.001659475605708596, 0.001327580484566877, 0.0009956853634251576, 0.00033189512114171923, 0.0, 0.0023232658479920344, 0.0, 0.0, 0.0, 0.813143046797212, 0.00033189512114171923, 0.001327580484566877, 0.0009956853634251576, 0.0, 0.9498838367076003, 0.7225356787255227, 0.001327580484566877, 0.006306007301692665, 0.06770660471291072, 0.9442416196481912, 0.0009956853634251576, 0.00033189512114171923, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002655160969133754, 0.00033189512114171923, 0.026883504812479257, 0.001659475605708596, 0.001659475605708596, 0.7699966810487886, 0.12114171921672752, 0.12645204115499503, 0.18187852638566213, 0.0965814802522403, 0.11981413873216064, 0.2552273481579821, 0.4005974112180551, 0.46996349153667444, 0.6073680716893461, 0.9130434782608695], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LTV.gap.json b/pfam_gap_rates/LTV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93544a69501f9e6709d32e4f652a26a76c21fa9e
--- /dev/null
+++ b/pfam_gap_rates/LTV.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LXG.gap.json b/pfam_gap_rates/LXG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..784ba40b6f2270e4085f118b4d2eeb4a956efff8
--- /dev/null
+++ b/pfam_gap_rates/LXG.gap.json
@@ -0,0 +1 @@
+{"family": "LXG", "n_seqs": 123, "length": 211, "gap_rates": [0.6178861788617886, 0.4796747967479675, 0.42276422764227645, 0.3983739837398374, 0.35772357723577236, 0.3333333333333333, 0.2845528455284553, 0.2601626016260163, 0.2601626016260163, 0.25203252032520324, 0.25203252032520324, 0.24390243902439024, 0.21951219512195122, 0.18699186991869918, 0.17886178861788618, 0.17886178861788618, 0.17073170731707318, 0.16260162601626016, 0.13821138211382114, 0.12195121951219512, 0.10569105691056911, 0.10569105691056911, 0.10569105691056911, 0.08943089430894309, 0.08943089430894309, 0.08130081300813008, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.08130081300813008, 0.21138211382113822, 0.18699186991869918, 0.06504065040650407, 0.06504065040650407, 0.056910569105691054, 0.3252032520325203, 0.7479674796747967, 0.056910569105691054, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.21951219512195122, 0.04878048780487805, 0.04878048780487805, 0.04065040650406504, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.016260162601626018, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.8211382113821138, 0.18699186991869918, 0.06504065040650407, 0.056910569105691054, 0.008130081300813009, 0.13008130081300814, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.016260162601626018, 0.016260162601626018, 0.032520325203252036, 0.016260162601626018, 0.024390243902439025, 0.4146341463414634, 0.04878048780487805, 0.024390243902439025, 0.13008130081300814, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.15447154471544716, 0.10569105691056911, 0.943089430894309, 0.943089430894309, 0.943089430894309, 0.943089430894309, 0.943089430894309, 0.943089430894309, 0.943089430894309, 0.943089430894309, 0.08130081300813008, 0.07317073170731707, 0.08943089430894309, 0.07317073170731707, 0.0975609756097561, 0.07317073170731707, 0.10569105691056911, 0.10569105691056911, 0.11382113821138211, 0.08130081300813008, 0.08130081300813008, 0.08130081300813008, 0.06504065040650407, 0.04878048780487805, 0.056910569105691054, 0.056910569105691054, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.12195121951219512, 0.056910569105691054, 0.08130081300813008, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.07317073170731707, 0.08130081300813008, 0.08130081300813008, 0.07317073170731707, 0.06504065040650407, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.08130081300813008, 0.08130081300813008, 0.08943089430894309, 0.08943089430894309, 0.08130081300813008, 0.08130081300813008, 0.08130081300813008, 0.08130081300813008, 0.12195121951219512, 0.13821138211382114, 0.17073170731707318, 0.2032520325203252, 0.2032520325203252, 0.23577235772357724, 0.2601626016260163, 0.2682926829268293, 0.2682926829268293, 0.2764227642276423, 0.3008130081300813, 0.3902439024390244, 0.5284552845528455, 0.6097560975609756, 0.6747967479674797, 0.7723577235772358], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lactamase_B_3.gap.json b/pfam_gap_rates/Lactamase_B_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18a6b7f8fce23284dec6b874f4b7b39ba77046b1
--- /dev/null
+++ b/pfam_gap_rates/Lactamase_B_3.gap.json
@@ -0,0 +1 @@
+{"family": "Lactamase_B_3", "n_seqs": 2011, "length": 284, "gap_rates": [0.4604674291397315, 0.19094977623073098, 0.1601193436101442, 0.12282446544007956, 0.09547488811536549, 0.08552958727001492, 0.07458975634012929, 0.07061163600198907, 0.0676280457483839, 0.06514172053704624, 0.05967180507210343, 0.058677274987568376, 0.06066633515663849, 0.06414719045251119, 0.887120835405271, 0.06364992541024365, 0.9179512680258578, 0.06315266036797614, 0.04276479363500746, 0.029835902536051714, 0.02734957732471407, 0.025857782197911485, 0.023371456986573842, 0.023371456986573842, 0.023371456986573842, 0.02486325211337643, 0.7662854301342615, 0.8329189457981104, 0.859771258080557, 0.8836399801093983, 0.9234211834908006, 0.9457981103928393, 0.939830929885629, 0.9010442565887619, 0.8731974142217802, 0.8468423669816012, 0.7687717553455992, 0.7662854301342615, 0.02734957732471407, 0.29636996519144704, 0.8851317752362009, 0.9154649428145202, 0.7155643958229736, 0.2466434609646942, 0.20785678766782695, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Lactamase_B_6.gap.json b/pfam_gap_rates/Lactamase_B_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d55f809586f8bb2f812aa1c3598b8e5609ab483
--- /dev/null
+++ b/pfam_gap_rates/Lactamase_B_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Las1.gap.json b/pfam_gap_rates/Las1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d896c2fc60b4522e2f96901fb17f6d37d1d35d5
--- /dev/null
+++ b/pfam_gap_rates/Las1.gap.json
@@ -0,0 +1 @@
+{"family": "Las1", "n_seqs": 320, "length": 206, "gap_rates": [0.396875, 0.296875, 0.29375, 0.28125, 0.25625, 0.209375, 0.1875, 0.18125, 0.178125, 0.178125, 0.175, 0.171875, 0.171875, 0.190625, 0.175, 0.16875, 0.16875, 0.73125, 0.821875, 0.834375, 0.84375, 0.86875, 0.875, 0.884375, 0.90625, 0.90625, 0.91875, 0.91875, 0.921875, 0.93125, 0.9375, 0.94375, 0.95, 0.95, 0.95, 0.95, 0.946875, 0.940625, 0.934375, 0.928125, 0.921875, 0.91875, 0.9125, 0.90625, 0.89375, 0.88125, 0.86875, 0.8625, 0.840625, 0.828125, 0.815625, 0.5875, 0.50625, 0.203125, 0.9375, 0.190625, 0.175, 0.1625, 0.159375, 0.159375, 0.159375, 0.159375, 0.159375, 0.15625, 0.153125, 0.153125, 0.14375, 0.14375, 0.14375, 0.14375, 0.140625, 0.140625, 0.140625, 0.14375, 0.14375, 0.13125, 0.73125, 0.64375, 0.125, 0.125, 0.125, 0.115625, 0.1125, 0.1125, 0.1125, 0.115625, 0.115625, 0.115625, 0.109375, 0.10625, 0.10625, 0.1, 0.103125, 0.10625, 0.1, 0.096875, 0.096875, 0.09375, 0.103125, 0.109375, 0.165625, 0.46875, 0.521875, 0.559375, 0.69375, 0.759375, 0.85625, 0.9125, 0.921875, 0.934375, 0.940625, 0.94375, 0.94375, 0.934375, 0.928125, 0.91875, 0.89375, 0.8125, 0.74375, 0.65625, 0.428125, 0.190625, 0.15, 0.13125, 0.109375, 0.10625, 0.1, 0.0875, 0.084375, 0.078125, 0.078125, 0.075, 0.075, 0.071875, 0.06875, 0.071875, 0.06875, 0.071875, 0.071875, 0.071875, 0.071875, 0.075, 0.078125, 0.078125, 0.08125, 0.08125, 0.084375, 0.084375, 0.09375, 0.946875, 0.90625, 0.259375, 0.1875, 0.13125, 0.0875, 0.078125, 0.071875, 0.06875, 0.06875, 0.06875, 0.065625, 0.0625, 0.053125, 0.05, 0.05, 0.05, 0.053125, 0.053125, 0.053125, 0.053125, 0.053125, 0.053125, 0.053125, 0.05625, 0.05625, 0.05625, 0.05625, 0.05625, 0.05625, 0.8875, 0.05625, 0.05625, 0.05625, 0.05625, 0.05625, 0.059375, 0.059375, 0.059375, 0.059375, 0.0625, 0.0625, 0.06875, 0.071875, 0.075, 0.075, 0.075, 0.075, 0.075, 0.078125, 0.078125, 0.090625, 0.096875, 0.1, 0.10625, 0.146875, 0.903125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lectin_C.gap.json b/pfam_gap_rates/Lectin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..febf38f9fff50241a4e2ff7dc3ceab87fe52bdfd
--- /dev/null
+++ b/pfam_gap_rates/Lectin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Lectin_C", "n_seqs": 5000, "length": 141, "gap_rates": [0.5316, 0.2744, 0.1526, 0.1252, 0.1036, 0.0912, 0.0842, 0.079, 0.0754, 0.0718, 0.0702, 0.071, 0.0676, 0.9394, 0.9064, 0.06, 0.0556, 0.0534, 0.0506, 0.0478, 0.047, 0.0454, 0.046, 0.0446, 0.0492, 0.046, 0.0434, 0.0428, 0.0408, 0.0394, 0.0386, 0.0374, 0.0366, 0.0428, 0.0478, 0.1042, 0.2686, 0.5654, 0.798, 0.8964, 0.9326, 0.9496, 0.9196, 0.8526, 0.678, 0.439, 0.2242, 0.0606, 0.0274, 0.021, 0.0182, 0.0154, 0.0148, 0.0152, 0.0144, 0.0148, 0.8852, 0.9414, 0.9202, 0.8484, 0.2816, 0.1868, 0.0668, 0.0524, 0.0306, 0.0248, 0.0176, 0.0158, 0.016, 0.016, 0.0162, 0.017, 0.0178, 0.0204, 0.0216, 0.0242, 0.027, 0.031, 0.4388, 0.5262, 0.5982, 0.6422, 0.928, 0.9468, 0.9394, 0.906, 0.2834, 0.2748, 0.2014, 0.1318, 0.3658, 0.6118, 0.9, 0.9422, 0.9258, 0.8242, 0.4666, 0.2442, 0.1322, 0.093, 0.0826, 0.0826, 0.083, 0.085, 0.0866, 0.0884, 0.0898, 0.0912, 0.0938, 0.0966, 0.0982, 0.7688, 0.8876, 0.9412, 0.9186, 0.8346, 0.6696, 0.494, 0.3542, 0.2004, 0.1186, 0.115, 0.1156, 0.117, 0.1184, 0.1196, 0.1204, 0.125, 0.1272, 0.1296, 0.132, 0.1378, 0.8732, 0.1512, 0.16, 0.166, 0.1672, 0.1714, 0.1772, 0.2108, 0.6088], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lectin_leg-like.gap.json b/pfam_gap_rates/Lectin_leg-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7c6408ba76901d4e214685b7c9529da6c46b02c
--- /dev/null
+++ b/pfam_gap_rates/Lectin_leg-like.gap.json
@@ -0,0 +1 @@
+{"family": "Lectin_leg-like", "n_seqs": 604, "length": 242, "gap_rates": [0.7615894039735099, 0.7135761589403974, 0.609271523178808, 0.4817880794701987, 0.4304635761589404, 0.38741721854304634, 0.36920529801324503, 0.3609271523178808, 0.3526490066225166, 0.3394039735099338, 0.3294701986754967, 0.3294701986754967, 0.32450331125827814, 0.31788079470198677, 0.30629139072847683, 0.28642384105960267, 0.4155629139072848, 0.27980132450331124, 0.24503311258278146, 0.24834437086092714, 0.36258278145695366, 0.18874172185430463, 0.1804635761589404, 0.17880794701986755, 0.173841059602649, 0.17052980132450332, 0.1672185430463576, 0.15728476821192053, 0.15562913907284767, 0.15562913907284767, 0.1456953642384106, 0.1390728476821192, 0.9271523178807947, 0.9437086092715232, 0.7268211920529801, 0.12582781456953643, 0.12251655629139073, 0.12086092715231789, 0.11754966887417219, 0.11920529801324503, 0.11754966887417219, 0.11754966887417219, 0.11920529801324503, 0.11754966887417219, 0.1390728476821192, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LigT_PEase.gap.json b/pfam_gap_rates/LigT_PEase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..593a27282bc0cbb54a29588d61cd3712cb551f3b
--- /dev/null
+++ b/pfam_gap_rates/LigT_PEase.gap.json
@@ -0,0 +1 @@
+{"family": "LigT_PEase", "n_seqs": 636, "length": 90, "gap_rates": [0.7594339622641509, 0.6116352201257862, 0.5471698113207547, 0.4371069182389937, 0.3946540880503145, 0.3443396226415094, 0.3380503144654088, 0.2720125786163522, 0.17452830188679244, 0.12421383647798742, 0.1069182389937107, 0.09276729559748427, 0.07547169811320754, 0.06918238993710692, 0.0660377358490566, 0.05817610062893082, 0.055031446540880505, 0.05188679245283019, 0.05817610062893082, 0.5990566037735849, 0.550314465408805, 0.3050314465408805, 0.2688679245283019, 0.19654088050314467, 0.1320754716981132, 0.025157232704402517, 0.01729559748427673, 0.02358490566037736, 0.01729559748427673, 0.012578616352201259, 0.7484276729559748, 0.0047169811320754715, 0.0031446540880503146, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0047169811320754715, 0.05660377358490566, 0.07232704402515723, 0.8805031446540881, 0.03459119496855346, 0.018867924528301886, 0.012578616352201259, 0.007861635220125786, 0.007861635220125786, 0.0220125786163522, 0.012578616352201259, 0.0220125786163522, 0.020440251572327043, 0.020440251572327043, 0.01729559748427673, 0.0220125786163522, 0.050314465408805034, 0.03773584905660377, 0.360062893081761, 0.3946540880503145, 0.08490566037735849, 0.12578616352201258, 0.17452830188679244, 0.13522012578616352, 0.22955974842767296, 0.18867924528301888, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.020440251572327043, 0.020440251572327043, 0.02358490566037736, 0.026729559748427674, 0.02830188679245283, 0.02830188679245283, 0.04245283018867924, 0.139937106918239, 0.17767295597484276, 0.20911949685534592, 0.7421383647798742, 0.14622641509433962, 0.14779874213836477, 0.1650943396226415, 0.20754716981132076, 0.26257861635220126, 0.3443396226415094], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ligase_CoA.gap.json b/pfam_gap_rates/Ligase_CoA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b19a965023978159863fe04115e47bf4d31bf659
--- /dev/null
+++ b/pfam_gap_rates/Ligase_CoA.gap.json
@@ -0,0 +1 @@
+{"family": "Ligase_CoA", "n_seqs": 3899, "length": 137, "gap_rates": [0.1995383431649141, 0.10900230828417543, 0.03154655039753783, 0.02539112592972557, 0.02462169787124904, 0.02410874583226468, 0.023852269812772504, 0.02333931777378815, 0.02231341369581944, 0.02231341369581944, 0.02231341369581944, 0.022826365734803795, 0.022826365734803795, 0.022569889715311618, 0.022569889715311618, 0.02231341369581944, 0.022569889715311618, 0.023082841754295973, 0.9256219543472686, 0.9202359579379328, 0.9189535778404719, 0.9174147217235189, 0.9156193895870736, 0.06309310079507566, 0.060528340600153885, 0.013080276994101052, 0.010771992818671455, 0.010515516799179277, 0.009746088740702744, 0.009489612721210567, 0.009489612721210567, 0.009489612721210567, 0.00923313670171839, 0.008976660682226212, 0.008976660682226212, 0.008720184662734035, 0.008720184662734035, 0.008976660682226212, 0.42754552449345984, 0.03590664272890485, 0.008976660682226212, 0.00718132854578097, 0.006924852526288792, 0.006668376506796614, 0.0056424724288279045, 0.005129520389843549, 0.005129520389843549, 0.004873044370351372, 0.005898948448320082, 0.004873044370351372, 0.004616568350859195, 0.005129520389843549, 0.00718132854578097, 0.005385996409335727, 0.004103616311874839, 0.003334188253398307, 0.0025647601949217746, 0.0028212362144139523, 0.003334188253398307, 0.003334188253398307, 0.003847140292382662, 0.003590664272890485, 0.003590664272890485, 0.003334188253398307, 0.003334188253398307, 0.003334188253398307, 0.5185945114131829, 0.004103616311874839, 0.004103616311874839, 0.003847140292382662, 0.003847140292382662, 0.0043600923313670175, 0.005898948448320082, 0.012567324955116697, 0.027186458066170812, 0.029751218261092588, 0.0284688381636317, 0.014106181072069762, 0.016927417286483715, 0.017953321364452424, 0.08309823031546551, 0.0843806104129264, 0.10207745575788664, 0.19774301102846883, 0.2872531418312388, 0.8968966401641446, 0.8125160297512183, 0.33316234932033856, 0.273146960759169, 0.12362144139522954, 0.010515516799179277, 0.00718132854578097, 0.006924852526288792, 0.006924852526288792, 0.006668376506796614, 0.00718132854578097, 0.007950756604257501, 0.008463708643241858, 0.010002564760194921, 0.010515516799179277, 0.011284944857655809, 0.01205437291613234, 0.923313670171839, 0.9212618620159015, 0.4488330341113106, 0.4490895101308028, 0.4513977943062324, 0.4519107463452167, 0.4524236983842011, 0.9230571941523468, 0.02539112592972557, 0.02564760194921775, 0.02641703000769428, 0.026673506027186458, 0.02872531418312388, 0.029751218261092588, 0.03231597845601436, 0.03488073865093614, 0.037189022826365735, 0.04052321107976404, 0.04385739933316235, 0.04693511156706848, 0.05103872787894332, 0.055142344190818156, 0.06078481661964606, 0.06617081302898178, 0.07309566555527058, 0.10669402410874583, 0.12746858168761221, 0.1446524749935881, 0.16414465247499357, 0.18312387791741472, 0.20954090792510902, 0.24108745832264683, 0.30905360348807387, 0.5021800461656835, 0.8191844062580149], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipoprotein_Ltp.gap.json b/pfam_gap_rates/Lipoprotein_Ltp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3523ce753fd9d3ad423f207e759c79684e8b6a6
--- /dev/null
+++ b/pfam_gap_rates/Lipoprotein_Ltp.gap.json
@@ -0,0 +1 @@
+{"family": "Lipoprotein_Ltp", "n_seqs": 265, "length": 48, "gap_rates": [0.4528301886792453, 0.2490566037735849, 0.09811320754716982, 0.033962264150943396, 0.01509433962264151, 0.007547169811320755, 0.007547169811320755, 0.0037735849056603774, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.018867924528301886, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.37358490566037733, 0.4037735849056604, 0.39245283018867927, 0.007547169811320755, 0.0, 0.0, 0.0, 0.0, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.011320754716981131, 0.022641509433962263, 0.033962264150943396, 0.04150943396226415, 0.0830188679245283, 0.16981132075471697, 0.3433962264150943], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipoxygenase.gap.json b/pfam_gap_rates/Lipoxygenase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b355d7094886611ca944f8c2db2a6b78bc0d4866
--- /dev/null
+++ b/pfam_gap_rates/Lipoxygenase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Lon_2.gap.json b/pfam_gap_rates/Lon_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..821071154854131d2854b137acd6cf256890cc9d
--- /dev/null
+++ b/pfam_gap_rates/Lon_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LrgB.gap.json b/pfam_gap_rates/LrgB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8292f310408a2481cd18bd51a5cdcea20256772f
--- /dev/null
+++ b/pfam_gap_rates/LrgB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LtrA.gap.json b/pfam_gap_rates/LtrA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a745ba5766c306cce44c2f6e04ac441e44d193d2
--- /dev/null
+++ b/pfam_gap_rates/LtrA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LuxE.gap.json b/pfam_gap_rates/LuxE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6f55dc4157c3b92644a6b564f75da0fe92582b0
--- /dev/null
+++ b/pfam_gap_rates/LuxE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LuxS.gap.json b/pfam_gap_rates/LuxS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d9440aa3da65aa1a7e64d3386fa1a224e0c679a
--- /dev/null
+++ b/pfam_gap_rates/LuxS.gap.json
@@ -0,0 +1 @@
+{"family": "LuxS", "n_seqs": 558, "length": 155, "gap_rates": [0.2831541218637993, 0.03225806451612903, 0.023297491039426525, 0.023297491039426525, 0.023297491039426525, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.01971326164874552, 0.01971326164874552, 0.41935483870967744, 0.01971326164874552, 0.01971326164874552, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.014336917562724014, 0.1039426523297491, 0.40860215053763443, 0.12007168458781362, 0.11827956989247312, 0.11648745519713262, 0.025089605734767026, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.5985663082437276, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.012544802867383513, 0.012544802867383513, 0.012544802867383513, 0.012544802867383513, 0.012544802867383513, 0.2939068100358423, 0.532258064516129, 0.525089605734767, 0.9444444444444444, 0.4068100358422939, 0.4014336917562724, 0.012544802867383513, 0.012544802867383513, 0.012544802867383513, 0.012544802867383513, 0.012544802867383513, 0.012544802867383513, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.012544802867383513, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.010752688172043012, 0.08064516129032258, 0.010752688172043012, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.32437275985663083, 0.3010752688172043, 0.3064516129032258, 0.016129032258064516, 0.016129032258064516, 0.43727598566308246, 0.4121863799283154, 0.008960573476702509, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.008960573476702509, 0.008960573476702509, 0.008960573476702509, 0.008960573476702509, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.012544802867383513, 0.012544802867383513, 0.014336917562724014, 0.08243727598566308, 0.0913978494623656, 0.0913978494623656, 0.11827956989247312, 0.1917562724014337, 0.43548387096774194, 0.6379928315412187, 0.8978494623655914], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lyase_8_N.gap.json b/pfam_gap_rates/Lyase_8_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..415156314a36263230f84d0038576116cfe930ec
--- /dev/null
+++ b/pfam_gap_rates/Lyase_8_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Lzipper-MIP1.gap.json b/pfam_gap_rates/Lzipper-MIP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55d7a44650825bb03b30602331e3b3d0cf374b44
--- /dev/null
+++ b/pfam_gap_rates/Lzipper-MIP1.gap.json
@@ -0,0 +1 @@
+{"family": "Lzipper-MIP1", "n_seqs": 422, "length": 90, "gap_rates": [0.6895734597156398, 0.4218009478672986, 0.33175355450236965, 0.23696682464454977, 0.18246445497630331, 0.16824644549763032, 0.16587677725118483, 0.16587677725118483, 0.16113744075829384, 0.15876777251184834, 0.14454976303317535, 0.11374407582938388, 0.10426540284360189, 0.0971563981042654, 0.0924170616113744, 0.0924170616113744, 0.0924170616113744, 0.0924170616113744, 0.09004739336492891, 0.09004739336492891, 0.08767772511848342, 0.08767772511848342, 0.08767772511848342, 0.08767772511848342, 0.08530805687203792, 0.08530805687203792, 0.08530805687203792, 0.08530805687203792, 0.08056872037914692, 0.08056872037914692, 0.08056872037914692, 0.08056872037914692, 0.08056872037914692, 0.8791469194312796, 0.9218009478672986, 0.9312796208530806, 0.9265402843601895, 0.9146919431279621, 0.8459715639810427, 0.4549763033175355, 0.13033175355450238, 0.0947867298578199, 0.07819905213270142, 0.18009478672985782, 0.0947867298578199, 0.22985781990521326, 0.08056872037914692, 0.061611374407582936, 0.04739336492890995, 0.037914691943127965, 0.030805687203791468, 0.04028436018957346, 0.943127962085308, 0.11137440758293839, 0.026066350710900472, 0.02843601895734597, 0.023696682464454975, 0.014218009478672985, 0.011848341232227487, 0.011848341232227487, 0.011848341232227487, 0.011848341232227487, 0.011848341232227487, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.011848341232227487, 0.014218009478672985, 0.02132701421800948, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.05924170616113744, 0.06635071090047394, 0.10900473933649289, 0.14218009478672985, 0.24644549763033174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/M16C_assoc.gap.json b/pfam_gap_rates/M16C_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d882c9798bf864e91d19ed0f4b57353eb0e954b5
--- /dev/null
+++ b/pfam_gap_rates/M16C_assoc.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MAF_flag10.gap.json b/pfam_gap_rates/MAF_flag10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..262fa157b70fa7523b8230d45814392357546d2e
--- /dev/null
+++ b/pfam_gap_rates/MAF_flag10.gap.json
@@ -0,0 +1 @@
+{"family": "MAF_flag10", "n_seqs": 486, "length": 196, "gap_rates": [0.9032921810699589, 0.5699588477366255, 0.5185185185185185, 0.4773662551440329, 0.43004115226337447, 0.4074074074074074, 0.3868312757201646, 0.3765432098765432, 0.360082304526749, 0.35185185185185186, 0.34156378600823045, 0.345679012345679, 0.5329218106995884, 0.3991769547325103, 0.28600823045267487, 0.20987654320987653, 0.17695473251028807, 0.15432098765432098, 0.1419753086419753, 0.13168724279835392, 0.12962962962962962, 0.20164609053497942, 0.1831275720164609, 0.16872427983539096, 0.13991769547325103, 0.911522633744856, 0.9362139917695473, 0.8209876543209876, 0.6460905349794238, 0.047325102880658436, 0.03292181069958848, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.030864197530864196, 0.047325102880658436, 0.8991769547325102, 0.037037037037037035, 0.03497942386831276, 0.030864197530864196, 0.03292181069958848, 0.04938271604938271, 0.20987654320987653, 0.19753086419753085, 0.17695473251028807, 0.9156378600823045, 0.8950617283950617, 0.11316872427983539, 0.03909465020576132, 0.01646090534979424, 0.01646090534979424, 0.0102880658436214, 0.0102880658436214, 0.006172839506172839, 0.00823045267489712, 0.006172839506172839, 0.012345679012345678, 0.00823045267489712, 0.00823045267489712, 0.00411522633744856, 0.006172839506172839, 0.006172839506172839, 0.0102880658436214, 0.006172839506172839, 0.0102880658436214, 0.00823045267489712, 0.00411522633744856, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8621399176954733, 0.0, 0.0, 0.00205761316872428, 0.23868312757201646, 0.18930041152263374, 0.1419753086419753, 0.02880658436213992, 0.026748971193415638, 0.024691358024691357, 0.09259259259259259, 0.030864197530864196, 0.01646090534979424, 0.012345679012345678, 0.012345679012345678, 0.01440329218106996, 0.01646090534979424, 0.09465020576131687, 0.44650205761316875, 0.757201646090535, 0.9362139917695473, 0.9465020576131687, 0.8765432098765432, 0.7078189300411523, 0.024691358024691357, 0.018518518518518517, 0.01646090534979424, 0.01440329218106996, 0.0102880658436214, 0.0102880658436214, 0.0102880658436214, 0.018518518518518517, 0.0205761316872428, 0.01646090534979424, 0.018518518518518517, 0.01440329218106996, 0.01646090534979424, 0.0102880658436214, 0.0102880658436214, 0.03497942386831276, 0.0205761316872428, 0.01440329218106996, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.01440329218106996, 0.01440329218106996, 0.7736625514403292, 0.02263374485596708, 0.0720164609053498, 0.026748971193415638, 0.0205761316872428, 0.06584362139917696, 0.11728395061728394, 0.07613168724279835, 0.12757201646090535, 0.27983539094650206, 0.7078189300411523, 0.8806584362139918, 0.934156378600823, 0.911522633744856, 0.8292181069958847, 0.5925925925925926, 0.08847736625514403, 0.09053497942386832, 0.102880658436214, 0.10082304526748971, 0.3292181069958848, 0.2448559670781893, 0.25308641975308643, 0.24691358024691357, 0.2139917695473251, 0.1522633744855967, 0.5864197530864198, 0.8621399176954733, 0.9444444444444444, 0.9135802469135802, 0.6995884773662552, 0.42592592592592593, 0.03909465020576132, 0.02880658436213992, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.030864197530864196, 0.0205761316872428, 0.0205761316872428, 0.02263374485596708, 0.030864197530864196, 0.0205761316872428, 0.024691358024691357, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.026748971193415638, 0.030864197530864196, 0.03497942386831276, 0.05555555555555555, 0.12962962962962962, 0.23045267489711935, 0.4670781893004115], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MAGE.gap.json b/pfam_gap_rates/MAGE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6572f7d157f4307521e04812ea6083f044e8f2a
--- /dev/null
+++ b/pfam_gap_rates/MAGE.gap.json
@@ -0,0 +1 @@
+{"family": "MAGE", "n_seqs": 460, "length": 274, "gap_rates": [0.44565217391304346, 0.3630434782608696, 0.3347826086956522, 0.3282608695652174, 0.32608695652173914, 0.3239130434782609, 0.3217391304347826, 0.3130434782608696, 0.30869565217391304, 0.3, 0.3, 0.3, 0.9282608695652174, 0.9217391304347826, 0.29347826086956524, 0.2847826086956522, 0.2847826086956522, 0.2826086956521739, 0.28043478260869564, 0.2782608695652174, 0.27391304347826084, 0.2717391304347826, 0.2717391304347826, 0.27391304347826084, 0.4391304347826087, 0.2826086956521739, 0.27608695652173915, 0.27391304347826084, 0.27391304347826084, 0.9021739130434783, 0.9478260869565217, 0.8565217391304348, 0.5130434782608696, 0.358695652173913, 0.38913043478260867, 0.26304347826086955, 0.26304347826086955, 0.2608695652173913, 0.2565217391304348, 0.2565217391304348, 0.2565217391304348, 0.2543478260869565, 0.2543478260869565, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 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\ No newline at end of file
diff --git a/pfam_gap_rates/MAGE_N.gap.json b/pfam_gap_rates/MAGE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7230bef45a077140d5d6997a55bdb03a3271cbc5
--- /dev/null
+++ b/pfam_gap_rates/MAGE_N.gap.json
@@ -0,0 +1 @@
+{"family": "MAGE_N", "n_seqs": 106, "length": 108, "gap_rates": [0.3113207547169811, 0.2830188679245283, 0.27358490566037735, 0.2358490566037736, 0.2169811320754717, 0.18867924528301888, 0.18867924528301888, 0.16981132075471697, 0.16037735849056603, 0.16037735849056603, 0.1509433962264151, 0.14150943396226415, 0.1320754716981132, 0.11320754716981132, 0.11320754716981132, 0.10377358490566038, 0.09433962264150944, 0.1320754716981132, 0.14150943396226415, 0.1320754716981132, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.12264150943396226, 0.09433962264150944, 0.08490566037735849, 0.08490566037735849, 0.07547169811320754, 0.09433962264150944, 0.9433962264150944, 0.14150943396226415, 0.10377358490566038, 0.11320754716981132, 0.10377358490566038, 0.8584905660377359, 0.8962264150943396, 0.9150943396226415, 0.9339622641509434, 0.9433962264150944, 0.9433962264150944, 0.9433962264150944, 0.9433962264150944, 0.9433962264150944, 0.9433962264150944, 0.9433962264150944, 0.9150943396226415, 0.9056603773584906, 0.8867924528301887, 0.839622641509434, 0.22641509433962265, 0.2169811320754717, 0.27358490566037735, 0.27358490566037735, 0.24528301886792453, 0.19811320754716982, 0.18867924528301888, 0.16037735849056603, 0.11320754716981132, 0.10377358490566038, 0.09433962264150944, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.05660377358490566, 0.07547169811320754, 0.05660377358490566, 0.05660377358490566, 0.0660377358490566, 0.11320754716981132, 0.10377358490566038, 0.05660377358490566, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.2830188679245283, 0.2641509433962264, 0.25471698113207547, 0.0660377358490566, 0.05660377358490566, 0.05660377358490566, 0.04716981132075472, 0.05660377358490566, 0.05660377358490566, 0.0660377358490566, 0.09433962264150944, 0.09433962264150944, 0.07547169811320754, 0.07547169811320754, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.07547169811320754, 0.07547169811320754, 0.10377358490566038, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.10377358490566038, 0.16037735849056603, 0.16981132075471697, 0.16981132075471697, 0.19811320754716982, 0.2169811320754717, 0.2830188679245283, 0.39622641509433965, 0.4811320754716981, 0.6698113207547169], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MAPKK1_Int.gap.json b/pfam_gap_rates/MAPKK1_Int.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c03e9468a95e81dd36f486f17f406fc05493fd8c
--- /dev/null
+++ b/pfam_gap_rates/MAPKK1_Int.gap.json
@@ -0,0 +1 @@
+{"family": "MAPKK1_Int", "n_seqs": 117, "length": 126, "gap_rates": [0.6324786324786325, 0.41025641025641024, 0.3504273504273504, 0.3162393162393162, 0.27350427350427353, 0.23076923076923078, 0.2222222222222222, 0.21367521367521367, 0.21367521367521367, 0.21367521367521367, 0.21367521367521367, 0.20512820512820512, 0.20512820512820512, 0.17094017094017094, 0.1623931623931624, 0.1623931623931624, 0.17094017094017094, 0.1623931623931624, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.1452991452991453, 0.1452991452991453, 0.1452991452991453, 0.13675213675213677, 0.1282051282051282, 0.1282051282051282, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.08547008547008547, 0.09401709401709402, 0.07692307692307693, 0.06837606837606838, 0.05982905982905983, 0.8547008547008547, 0.042735042735042736, 0.042735042735042736, 0.05128205128205128, 0.06837606837606838, 0.03418803418803419, 0.042735042735042736, 0.03418803418803419, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.02564102564102564, 0.02564102564102564, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.03418803418803419, 0.02564102564102564, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.017094017094017096, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.03418803418803419, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.905982905982906, 0.9230769230769231, 0.9316239316239316, 0.9230769230769231, 0.9230769230769231, 0.8803418803418803, 0.05982905982905983, 0.06837606837606838, 0.06837606837606838, 0.05982905982905983, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.07692307692307693, 0.07692307692307693, 0.08547008547008547, 0.09401709401709402, 0.09401709401709402, 0.10256410256410256, 0.10256410256410256, 0.1111111111111111, 0.1282051282051282, 0.1282051282051282, 0.1452991452991453, 0.15384615384615385, 0.17094017094017094, 0.17094017094017094, 0.1794871794871795, 0.1794871794871795, 0.18803418803418803, 0.18803418803418803, 0.18803418803418803, 0.19658119658119658, 0.20512820512820512, 0.20512820512820512, 0.21367521367521367, 0.23931623931623933, 0.26495726495726496, 0.38461538461538464, 0.452991452991453, 0.5811965811965812, 0.6837606837606838], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MATH.gap.json b/pfam_gap_rates/MATH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9af781ef78417d489802a0e1e0f7049eb5be161
--- /dev/null
+++ b/pfam_gap_rates/MATH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MBOAT_2.gap.json b/pfam_gap_rates/MBOAT_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b407659308bf67e7542eab9818ae9ffdd8ed364b
--- /dev/null
+++ b/pfam_gap_rates/MBOAT_2.gap.json
@@ -0,0 +1 @@
+{"family": "MBOAT_2", "n_seqs": 627, "length": 103, "gap_rates": [0.5486443381180224, 0.2727272727272727, 0.15789473684210525, 0.11642743221690591, 0.08931419457735247, 0.06698564593301436, 0.04784688995215311, 0.03668261562998405, 0.9457735247208932, 0.02711323763955343, 0.022328548644338118, 0.019138755980861243, 0.014354066985645933, 0.011164274322169059, 0.011164274322169059, 0.011164274322169059, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.011164274322169059, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.011164274322169059, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.01594896331738437, 0.02073365231259968, 0.02073365231259968, 0.023923444976076555, 0.022328548644338118, 0.02711323763955343, 0.022328548644338118, 0.022328548644338118, 0.023923444976076555, 0.030303030303030304, 0.028708133971291867, 0.03349282296650718, 0.48484848484848486, 0.6156299840510366, 0.9266347687400319, 0.9457735247208932, 0.9393939393939394, 0.8676236044657097, 0.5151515151515151, 0.44178628389154706, 0.0430622009569378, 0.22647527910685805, 0.7049441786283892, 0.8580542264752791, 0.9218500797448166, 0.7464114832535885, 0.6379585326953748, 0.20095693779904306, 0.189792663476874, 0.15629984051036683, 0.04146730462519936, 0.03508771929824561, 0.03189792663476874, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.03189792663476874, 0.03349282296650718, 0.03349282296650718, 0.03508771929824561, 0.03668261562998405, 0.03827751196172249, 0.03987240829346093, 0.044657097288676235, 0.04784688995215311, 0.051036682615629984, 0.05422647527910686, 0.06060606060606061, 0.07177033492822966, 0.07655502392344497, 0.08931419457735247, 0.14992025518341306, 0.7926634768740032, 0.9266347687400319, 0.4130781499202552, 0.22966507177033493, 0.2966507177033493, 0.22966507177033493, 0.8405103668261563, 0.9090909090909091, 0.5598086124401914, 0.24242424242424243, 0.2535885167464115, 0.26156299840510366, 0.2647527910685805, 0.2711323763955343, 0.37161084529505584, 0.8835725677830941], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MCM_bind.gap.json b/pfam_gap_rates/MCM_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8951119b778df7663cc20db924591b8fda2b73c3
--- /dev/null
+++ b/pfam_gap_rates/MCM_bind.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MCU.gap.json b/pfam_gap_rates/MCU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c44af0e884ac39af00e1c6b5a77afe3f136f28ec
--- /dev/null
+++ b/pfam_gap_rates/MCU.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MDM31_MDM32.gap.json b/pfam_gap_rates/MDM31_MDM32.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61cd118ff1ab8bd9147ed9644792f0e02e2b789a
--- /dev/null
+++ b/pfam_gap_rates/MDM31_MDM32.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MDMPI_C.gap.json b/pfam_gap_rates/MDMPI_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d601e67b7e54338c5c2d74059e602ef0921af5cd
--- /dev/null
+++ b/pfam_gap_rates/MDMPI_C.gap.json
@@ -0,0 +1 @@
+{"family": "MDMPI_C", "n_seqs": 259, "length": 130, "gap_rates": [0.5637065637065637, 0.18532818532818532, 0.12355212355212356, 0.0888030888030888, 0.07335907335907337, 0.0694980694980695, 0.06177606177606178, 0.05791505791505792, 0.05019305019305019, 0.04633204633204633, 0.03474903474903475, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.02702702702702703, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.03474903474903475, 0.15057915057915058, 0.25868725868725867, 0.3127413127413127, 0.5907335907335908, 0.8455598455598455, 0.8764478764478765, 0.9073359073359073, 0.9343629343629344, 0.8918918918918919, 0.861003861003861, 0.6640926640926641, 0.5752895752895753, 0.44015444015444016, 0.36293436293436293, 0.24324324324324326, 0.15057915057915058, 0.13127413127413126, 0.1274131274131274, 0.04247104247104247, 0.019305019305019305, 0.015444015444015444, 0.011583011583011582, 0.007722007722007722, 0.007722007722007722, 0.007722007722007722, 0.007722007722007722, 0.003861003861003861, 0.003861003861003861, 0.007722007722007722, 0.03861003861003861, 0.0694980694980695, 0.05791505791505792, 0.138996138996139, 0.21235521235521235, 0.6138996138996139, 0.7644787644787645, 0.8725868725868726, 0.9459459459459459, 0.915057915057915, 0.8108108108108109, 0.6872586872586872, 0.46332046332046334, 0.22393822393822393, 0.40540540540540543, 0.3861003861003861, 0.3281853281853282, 0.3166023166023166, 0.3281853281853282, 0.3166023166023166, 0.1274131274131274, 0.30115830115830117, 0.3861003861003861, 0.44787644787644787, 0.4864864864864865, 0.61003861003861, 0.7065637065637066, 0.7644787644787645, 0.8803088803088803, 0.9227799227799228, 0.9382239382239382, 0.9498069498069498, 0.9305019305019305, 0.8996138996138996, 0.8416988416988417, 0.7413127413127413, 0.6563706563706564, 0.4942084942084942, 0.47876447876447875, 0.40540540540540543, 0.3359073359073359, 0.23938223938223938, 0.0888030888030888, 0.08108108108108109, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.015444015444015444, 0.015444015444015444, 0.019305019305019305, 0.02702702702702703, 0.0694980694980695, 0.10424710424710425, 0.5366795366795367, 0.8301158301158301, 0.8455598455598455, 0.5868725868725869, 0.09652509652509653, 0.07335907335907337, 0.05791505791505792, 0.05405405405405406, 0.05791505791505792, 0.07335907335907337, 0.10038610038610038, 0.11969111969111969, 0.15057915057915058, 0.2277992277992278, 0.4247104247104247, 0.8918918918918919], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MFP2b.gap.json b/pfam_gap_rates/MFP2b.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..003e694fc8da6c0063ae61090983f35a58b0cb88
--- /dev/null
+++ b/pfam_gap_rates/MFP2b.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MGDG_synth.gap.json b/pfam_gap_rates/MGDG_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acade449eaea56f4f947455f48138d6282bddc1d
--- /dev/null
+++ b/pfam_gap_rates/MGDG_synth.gap.json
@@ -0,0 +1 @@
+{"family": "MGDG_synth", "n_seqs": 686, "length": 175, "gap_rates": [0.13994169096209913, 0.13702623906705538, 0.13411078717201166, 0.13411078717201166, 0.1326530612244898, 0.13119533527696792, 0.1282798833819242, 0.12536443148688048, 0.12244897959183673, 0.12244897959183673, 0.1239067055393586, 0.13119533527696792, 0.17346938775510204, 0.13556851311953352, 0.35714285714285715, 0.3892128279883382, 0.3760932944606414, 0.22886297376093295, 0.12536443148688048, 0.10349854227405247, 0.09912536443148688, 0.09912536443148688, 0.09912536443148688, 0.17346938775510204, 0.1618075801749271, 0.09037900874635568, 0.08892128279883382, 0.08892128279883382, 0.08892128279883382, 0.12682215743440234, 0.09037900874635568, 0.09329446064139942, 0.09620991253644315, 0.09037900874635568, 0.1151603498542274, 0.08746355685131195, 0.08746355685131195, 0.08163265306122448, 0.07871720116618076, 0.07142857142857142, 0.06997084548104957, 0.06997084548104957, 0.06851311953352769, 0.07580174927113703, 0.07142857142857142, 0.06997084548104957, 0.06851311953352769, 0.06705539358600583, 0.06705539358600583, 0.06559766763848396, 0.41690962099125367, 0.061224489795918366, 0.061224489795918366, 0.0597667638483965, 0.0597667638483965, 0.0597667638483965, 0.05830903790087463, 0.0597667638483965, 0.05830903790087463, 0.056851311953352766, 0.08309037900874636, 0.07434402332361516, 0.21137026239067055, 0.10204081632653061, 0.07725947521865889, 0.07725947521865889, 0.8819241982507289, 0.9067055393586005, 0.8469387755102041, 0.11370262390670553, 0.07142857142857142, 0.06268221574344024, 0.0641399416909621, 0.0597667638483965, 0.07725947521865889, 0.06559766763848396, 0.052478134110787174, 0.04518950437317784, 0.043731778425655975, 0.04227405247813411, 0.04081632653061224, 0.03935860058309038, 0.033527696793002916, 0.9416909620991254, 0.03498542274052478, 0.03644314868804665, 0.03644314868804665, 0.03935860058309038, 0.052478134110787174, 0.052478134110787174, 0.04664723032069971, 0.04081632653061224, 0.04081632653061224, 0.037900874635568516, 0.03935860058309038, 0.04081632653061224, 0.03644314868804665, 0.03644314868804665, 0.03498542274052478, 0.03498542274052478, 0.03498542274052478, 0.03498542274052478, 0.03644314868804665, 0.033527696793002916, 0.11807580174927114, 0.08600583090379009, 0.07580174927113703, 0.07142857142857142, 0.6880466472303207, 0.06268221574344024, 0.05539358600583091, 0.10349854227405247, 0.07142857142857142, 0.043731778425655975, 0.037900874635568516, 0.03498542274052478, 0.03644314868804665, 0.11370262390670553, 0.09183673469387756, 0.5422740524781341, 0.11224489795918367, 0.04081632653061224, 0.03498542274052478, 0.056851311953352766, 0.06268221574344024, 0.048104956268221574, 0.030612244897959183, 0.030612244897959183, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.33090379008746357, 0.1282798833819242, 0.3556851311953353, 0.03498542274052478, 0.033527696793002916, 0.033527696793002916, 0.03206997084548105, 0.030612244897959183, 0.030612244897959183, 0.029154518950437316, 0.030612244897959183, 0.029154518950437316, 0.033527696793002916, 0.03206997084548105, 0.03498542274052478, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.03644314868804665, 0.033527696793002916, 0.037900874635568516, 0.03935860058309038, 0.04227405247813411, 0.048104956268221574, 0.05102040816326531, 0.05539358600583091, 0.061224489795918366, 0.07725947521865889, 0.9475218658892128, 0.07580174927113703, 0.08163265306122448, 0.08746355685131195, 0.09037900874635568, 0.09183673469387756, 0.09475218658892129, 0.09183673469387756, 0.09329446064139942, 0.09475218658892129, 0.09766763848396501, 0.10641399416909621, 0.11224489795918367, 0.12244897959183673, 0.1282798833819242, 0.20408163265306123], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MMR_HSR1.gap.json b/pfam_gap_rates/MMR_HSR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68a424f2dfbd9b2f7a7b5b530d54914c0a02d600
--- /dev/null
+++ b/pfam_gap_rates/MMR_HSR1.gap.json
@@ -0,0 +1 @@
+{"family": "MMR_HSR1", "n_seqs": 5000, "length": 176, "gap_rates": [0.6248, 0.0736, 0.0208, 0.0156, 0.0124, 0.012, 0.0104, 0.0096, 0.0094, 0.0088, 0.0076, 0.007, 0.007, 0.0068, 0.0062, 0.0054, 0.005, 0.005, 0.0048, 0.004, 0.004, 0.9388, 0.9406, 0.9488, 0.945, 0.9394, 0.9386, 0.0042, 0.8956, 0.3706, 0.0064, 0.0056, 0.005, 0.0048, 0.005, 0.0054, 0.0048, 0.0042, 0.0052, 0.005, 0.004, 0.005, 0.0052, 0.0048, 0.0048, 0.0048, 0.0052, 0.0108, 0.0062, 0.0086, 0.9318, 0.9482, 0.8838, 0.2028, 0.218, 0.1936, 0.8554, 0.0726, 0.014, 0.8464, 0.8472, 0.8486, 0.85, 0.8514, 0.8524, 0.8536, 0.8562, 0.8578, 0.8546, 0.8528, 0.8516, 0.8504, 0.8494, 0.8474, 0.8466, 0.8464, 0.0082, 0.0076, 0.0074, 0.0074, 0.0076, 0.0078, 0.0078, 0.0076, 0.293, 0.9042, 0.9114, 0.9452, 0.9154, 0.906, 0.901, 0.0152, 0.8934, 0.9318, 0.9118, 0.8782, 0.0678, 0.7386, 0.9224, 0.8624, 0.637, 0.1848, 0.1762, 0.0966, 0.0986, 0.099, 0.0832, 0.8592, 0.9112, 0.6394, 0.0776, 0.078, 0.0802, 0.0832, 0.0882, 0.0906, 0.0956, 0.1142, 0.9388, 0.9476, 0.9438, 0.9216, 0.1222, 0.1206, 0.115, 0.5974, 0.123, 0.116, 0.1166, 0.1174, 0.119, 0.1204, 0.1214, 0.1236, 0.1276, 0.2844, 0.6854, 0.7264, 0.827, 0.8674, 0.8346, 0.8064, 0.707, 0.6608, 0.4722, 0.2836, 0.2788, 0.306, 0.2586, 0.2554, 0.253, 0.258, 0.3196, 0.2788, 0.282, 0.2922, 0.305, 0.32, 0.3296, 0.3678, 0.4162, 0.4246, 0.8884, 0.9086, 0.795, 0.4072, 0.387, 0.3862, 0.3878, 0.3898, 0.3916, 0.3944, 0.3964, 0.4028, 0.414, 0.4466], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MMgT.gap.json b/pfam_gap_rates/MMgT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8cdc2ca0b4b5a810316909bcc63964647a960be4
--- /dev/null
+++ b/pfam_gap_rates/MMgT.gap.json
@@ -0,0 +1 @@
+{"family": "MMgT", "n_seqs": 237, "length": 141, "gap_rates": [0.8143459915611815, 0.31223628691983124, 0.08016877637130802, 0.0759493670886076, 0.0759493670886076, 0.07172995780590717, 0.05907172995780591, 0.05907172995780591, 0.05485232067510549, 0.05063291139240506, 0.046413502109704644, 0.0379746835443038, 0.0379746835443038, 0.03375527426160337, 0.03375527426160337, 0.029535864978902954, 0.029535864978902954, 0.029535864978902954, 0.029535864978902954, 0.03375527426160337, 0.03375527426160337, 0.029535864978902954, 0.7468354430379747, 0.7848101265822784, 0.8396624472573839, 0.8945147679324894, 0.9324894514767933, 0.9156118143459916, 0.8860759493670886, 0.8185654008438819, 0.7679324894514767, 0.7426160337552743, 0.7172995780590717, 0.13924050632911392, 0.0759493670886076, 0.05485232067510549, 0.04219409282700422, 0.029535864978902954, 0.012658227848101266, 0.012658227848101266, 0.008438818565400843, 0.008438818565400843, 0.004219409282700422, 0.0, 0.0, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.012658227848101266, 0.02531645569620253, 0.03375527426160337, 0.9240506329113924, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9324894514767933, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9282700421940928, 0.9071729957805907, 0.05063291139240506, 0.05063291139240506, 0.06751054852320675, 0.08016877637130802, 0.08438818565400844, 0.08438818565400844, 0.09282700421940929, 0.10548523206751055, 0.11392405063291139, 0.14767932489451477, 0.16877637130801687, 0.2320675105485232, 0.26582278481012656, 0.28270042194092826, 0.29535864978902954, 0.32489451476793246, 0.41350210970464135, 0.4345991561181435, 0.6033755274261603, 0.6118143459915611, 0.6160337552742616, 0.6160337552742616, 0.759493670886076, 0.8143459915611815, 0.8143459915611815, 0.8143459915611815, 0.8185654008438819, 0.8185654008438819, 0.8354430379746836, 0.8438818565400844, 0.8354430379746836, 0.8354430379746836, 0.8185654008438819, 0.8143459915611815, 0.8143459915611815, 0.8143459915611815, 0.8016877637130801, 0.7468354430379747, 0.5738396624472574, 0.569620253164557, 0.48945147679324896, 0.48523206751054854, 0.4810126582278481, 0.48945147679324896, 0.4936708860759494, 0.5063291139240507, 0.510548523206751, 0.510548523206751, 0.5189873417721519, 0.5358649789029536, 0.5991561181434599, 0.620253164556962, 0.6371308016877637, 0.6413502109704642, 0.6497890295358649, 0.6666666666666666, 0.6708860759493671, 0.679324894514768, 0.6919831223628692, 0.7130801687763713], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MOR2-PAG1_N.gap.json b/pfam_gap_rates/MOR2-PAG1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64b3ff92696f4e3f295ace86356c6b0c4f57b8fc
--- /dev/null
+++ b/pfam_gap_rates/MOR2-PAG1_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MPC.gap.json b/pfam_gap_rates/MPC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92389332497c8057239d87607d253aed80286b6f
--- /dev/null
+++ b/pfam_gap_rates/MPC.gap.json
@@ -0,0 +1 @@
+{"family": "MPC", "n_seqs": 755, "length": 109, "gap_rates": [0.5364238410596026, 0.47019867549668876, 0.41324503311258276, 0.3456953642384106, 0.30066225165562915, 0.2662251655629139, 0.24503311258278146, 0.23178807947019867, 0.223841059602649, 0.21059602649006623, 0.1947019867549669, 0.15364238410596026, 0.7311258278145696, 0.7311258278145696, 0.12185430463576159, 0.10860927152317881, 0.09668874172185431, 0.09536423841059603, 0.09006622516556291, 0.08079470198675497, 0.0781456953642384, 0.07682119205298013, 0.06490066225165562, 0.05827814569536424, 0.05827814569536424, 0.05562913907284768, 0.054304635761589407, 0.054304635761589407, 0.052980132450331126, 0.052980132450331126, 0.05033112582781457, 0.051655629139072845, 0.046357615894039736, 0.045033112582781455, 0.04370860927152318, 0.9298013245033112, 0.0423841059602649, 0.04105960264900662, 0.04105960264900662, 0.04105960264900662, 0.039735099337748346, 0.038410596026490065, 0.03576158940397351, 0.03443708609271523, 0.03576158940397351, 0.03576158940397351, 0.02913907284768212, 0.02781456953642384, 0.019867549668874173, 0.02781456953642384, 0.030463576158940398, 0.033112582781456956, 0.033112582781456956, 0.038410596026490065, 0.039735099337748346, 0.04370860927152318, 0.04370860927152318, 0.0423841059602649, 0.0423841059602649, 0.04370860927152318, 0.04768211920529802, 0.04768211920529802, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.051655629139072845, 0.052980132450331126, 0.052980132450331126, 0.052980132450331126, 0.054304635761589407, 0.05695364238410596, 0.05827814569536424, 0.05827814569536424, 0.059602649006622516, 0.060927152317880796, 0.060927152317880796, 0.06490066225165562, 0.06622516556291391, 0.06622516556291391, 0.06887417218543046, 0.07019867549668875, 0.07019867549668875, 0.07019867549668875, 0.07019867549668875, 0.07019867549668875, 0.08344370860927153, 0.09271523178807947, 0.1271523178807947, 0.14304635761589404, 0.16423841059602648, 0.19205298013245034, 0.22251655629139072, 0.247682119205298, 0.2860927152317881, 0.32980132450331123, 0.3708609271523179, 0.43973509933774835, 0.5218543046357615, 0.6185430463576159, 0.7059602649006622, 0.7602649006622516, 0.8039735099337748, 0.8490066225165563, 0.8847682119205298, 0.9271523178807947], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MSP.gap.json b/pfam_gap_rates/MSP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2558e720be6858cf901dc4e462cd1b49f9fe216d
--- /dev/null
+++ b/pfam_gap_rates/MSP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MTP18.gap.json b/pfam_gap_rates/MTP18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed954182f70548a3febacfe1ece28bd7c3a9ae75
--- /dev/null
+++ b/pfam_gap_rates/MTP18.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MUG113.gap.json b/pfam_gap_rates/MUG113.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c56cf3b615cdd605f99185f1899db8e7f87631db
--- /dev/null
+++ b/pfam_gap_rates/MUG113.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MacB_PCD.gap.json b/pfam_gap_rates/MacB_PCD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5babf424283667a0aa65ad3c81067b1cd7b7ca0a
--- /dev/null
+++ b/pfam_gap_rates/MacB_PCD.gap.json
@@ -0,0 +1 @@
+{"family": "MacB_PCD", "n_seqs": 5000, "length": 321, "gap_rates": [0.4642, 0.2982, 0.2246, 0.1892, 0.1584, 0.1412, 0.1292, 0.1124, 0.0962, 0.0878, 0.082, 0.0764, 0.0726, 0.067, 0.0644, 0.0624, 0.0602, 0.0578, 0.0572, 0.0562, 0.0554, 0.0552, 0.0548, 0.0538, 0.0534, 0.053, 0.128, 0.057, 0.0546, 0.0524, 0.0528, 0.1278, 0.0554, 0.0564, 0.1674, 0.0986, 0.8846, 0.6376, 0.0606, 0.1532, 0.2018, 0.1116, 0.084, 0.0532, 0.0692, 0.0638, 0.0726, 0.1258, 0.3668, 0.4798, 0.5858, 0.7084, 0.7944, 0.8956, 0.9292, 0.8578, 0.7598, 0.6484, 0.534, 0.415, 0.3134, 0.1414, 0.3186, 0.2914, 0.2586, 0.109, 0.7894, 0.8372, 0.877, 0.919, 0.9454, 0.9338, 0.8964, 0.8582, 0.807, 0.7822, 0.119, 0.0744, 0.0732, 0.0798, 0.092, 0.0606, 0.1496, 0.946, 0.8442, 0.1074, 0.1072, 0.9248, 0.1912, 0.221, 0.7652, 0.924, 0.9434, 0.8526, 0.738, 0.1308, 0.0822, 0.035, 0.9454, 0.1472, 0.0232, 0.0228, 0.033, 0.0284, 0.027, 0.0264, 0.0288, 0.0274, 0.1244, 0.2444, 0.7078, 0.8446, 0.9022, 0.9436, 0.9218, 0.8786, 0.7972, 0.4698, 0.183, 0.093, 0.083, 0.3538, 0.2316, 0.172, 0.1732, 0.2398, 0.2676, 0.567, 0.7718, 0.8626, 0.9206, 0.9392, 0.894, 0.821, 0.698, 0.4664, 0.05, 0.309, 0.283, 0.0866, 0.0358, 0.017, 0.0124, 0.0096, 0.8572, 0.796, 0.0186, 0.0232, 0.134, 0.9134, 0.0318, 0.0132, 0.018, 0.0162, 0.9386, 0.8828, 0.0408, 0.0218, 0.0168, 0.0166, 0.8546, 0.1506, 0.1084, 0.8976, 0.0764, 0.0698, 0.0228, 0.162, 0.1918, 0.189, 0.1454, 0.1404, 0.1576, 0.1646, 0.1678, 0.1758, 0.9086, 0.2662, 0.0568, 0.0354, 0.031, 0.025, 0.0108, 0.0096, 0.0118, 0.0122, 0.0104, 0.0106, 0.0108, 0.0124, 0.0214, 0.0208, 0.1048, 0.02, 0.0448, 0.406, 0.7594, 0.9152, 0.441, 0.3536, 0.0308, 0.0144, 0.0174, 0.0172, 0.02, 0.0182, 0.0202, 0.018, 0.0274, 0.4978, 0.554, 0.727, 0.7724, 0.8218, 0.848, 0.8896, 0.8702, 0.8322, 0.784, 0.7542, 0.6622, 0.5318, 0.4402, 0.0212, 0.0172, 0.0198, 0.0194, 0.019, 0.0194, 0.0192, 0.0198, 0.0202, 0.021, 0.1404, 0.0544, 0.7728, 0.1998, 0.4936, 0.8602, 0.922, 0.9418, 0.8948, 0.8056, 0.2266, 0.3774, 0.337, 0.3304, 0.2856, 0.2798, 0.1686, 0.7984, 0.9312, 0.8724, 0.6694, 0.1404, 0.0934, 0.0708, 0.0628, 0.0634, 0.0662, 0.07, 0.6854, 0.8368, 0.8914, 0.9452, 0.929, 0.8544, 0.8002, 0.6528, 0.641, 0.1824, 0.1848, 0.2026, 0.1846, 0.727, 0.7924, 0.875, 0.928, 0.895, 0.8242, 0.7648, 0.698, 0.283, 0.3548, 0.3496, 0.1816, 0.5278, 0.5494, 0.5856, 0.6674, 0.8396, 0.8946, 0.9326, 0.9438, 0.9102, 0.8658, 0.8012, 0.606, 0.5668, 0.5362, 0.5252, 0.1834, 0.1916, 0.195, 0.1988, 0.2082, 0.2186, 0.2274, 0.2494, 0.2556, 0.2638, 0.293, 0.2834, 0.2938, 0.3068, 0.3288, 0.3578, 0.3876, 0.419, 0.5136, 0.6694], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Maff2.gap.json b/pfam_gap_rates/Maff2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..829642d6c85c9372e52c8ed98b994f2f3164531d
--- /dev/null
+++ b/pfam_gap_rates/Maff2.gap.json
@@ -0,0 +1 @@
+{"family": "Maff2", "n_seqs": 191, "length": 70, "gap_rates": [0.08900523560209424, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06806282722513089, 0.06282722513089005, 0.06806282722513089, 0.06806282722513089, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.07329842931937172, 0.07329842931937172, 0.07853403141361257, 0.07853403141361257, 0.05235602094240838, 0.04712041884816754, 0.05235602094240838, 0.09947643979057591, 0.27225130890052357, 0.28272251308900526, 0.28272251308900526, 0.28272251308900526, 0.28272251308900526, 0.28272251308900526, 0.27225130890052357, 0.2774869109947644, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.3403141361256545, 0.34554973821989526, 0.3612565445026178, 0.38219895287958117], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mak10.gap.json b/pfam_gap_rates/Mak10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..812ed33bf5a26a451bf194b32a61e08d15c8f8da
--- /dev/null
+++ b/pfam_gap_rates/Mak10.gap.json
@@ -0,0 +1 @@
+{"family": "Mak10", "n_seqs": 328, "length": 193, "gap_rates": [0.7987804878048781, 0.3384146341463415, 0.3018292682926829, 0.29878048780487804, 0.27439024390243905, 0.2621951219512195, 0.25609756097560976, 0.24390243902439024, 0.24085365853658536, 0.23170731707317074, 0.22560975609756098, 0.22560975609756098, 0.22560975609756098, 0.22560975609756098, 0.21951219512195122, 0.20121951219512196, 0.19817073170731708, 0.19817073170731708, 0.19207317073170732, 0.18597560975609756, 0.18292682926829268, 0.1524390243902439, 0.1524390243902439, 0.15548780487804878, 0.15548780487804878, 0.14329268292682926, 0.14329268292682926, 0.14329268292682926, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.21341463414634146, 0.2073170731707317, 0.16463414634146342, 0.43902439024390244, 0.2347560975609756, 0.2347560975609756, 0.9176829268292683, 0.9420731707317073, 0.8841463414634146, 0.2530487804878049, 0.23170731707317074, 0.21951219512195122, 0.17378048780487804, 0.8323170731707317, 0.8536585365853658, 0.9024390243902439, 0.9237804878048781, 0.9085365853658537, 0.8689024390243902, 0.8475609756097561, 0.8323170731707317, 0.17378048780487804, 0.9298780487804879, 0.18902439024390244, 0.17378048780487804, 0.17378048780487804, 0.1676829268292683, 0.17073170731707318, 0.1676829268292683, 0.14634146341463414, 0.7317073170731707, 0.7591463414634146, 0.7926829268292683, 0.8140243902439024, 0.8048780487804879, 0.7774390243902439, 0.7439024390243902, 0.725609756097561, 0.14939024390243902, 0.1524390243902439, 0.1524390243902439, 0.14634146341463414, 0.14634146341463414, 0.14939024390243902, 0.14634146341463414, 0.14329268292682926, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.14939024390243902, 0.14939024390243902, 0.14939024390243902, 0.14329268292682926, 0.14939024390243902, 0.1524390243902439, 0.15548780487804878, 0.15548780487804878, 0.15548780487804878, 0.15548780487804878, 0.15548780487804878, 0.15548780487804878, 0.15548780487804878, 0.15548780487804878, 0.15548780487804878, 0.14634146341463414, 0.14634146341463414, 0.14939024390243902, 0.14939024390243902, 0.1524390243902439, 0.1524390243902439, 0.15853658536585366, 0.17073170731707318, 0.17682926829268292, 0.20426829268292682, 0.2926829268292683, 0.35060975609756095, 0.36890243902439024, 0.4054878048780488, 0.42378048780487804, 0.46646341463414637, 0.4847560975609756, 0.5060975609756098, 0.5640243902439024, 0.573170731707317, 0.5914634146341463, 0.600609756097561, 0.6067073170731707, 0.6829268292682927, 0.7835365853658537, 0.7987804878048781, 0.9329268292682927, 0.9451219512195121, 0.948170731707317, 0.9451219512195121, 0.9359756097560976, 0.926829268292683, 0.823170731707317, 0.8109756097560976, 0.7713414634146342, 0.7469512195121951, 0.7713414634146342, 0.7042682926829268, 0.6646341463414634, 0.6341463414634146, 0.5975609756097561, 0.5945121951219512, 0.5762195121951219, 0.5487804878048781, 0.5365853658536586, 0.5182926829268293, 0.47865853658536583, 0.4603658536585366, 0.45426829268292684, 0.4115853658536585, 0.4115853658536585, 0.40853658536585363, 0.40853658536585363, 0.40853658536585363, 0.4115853658536585, 0.4176829268292683, 0.4176829268292683, 0.4176829268292683, 0.4176829268292683, 0.4176829268292683, 0.4176829268292683, 0.4268292682926829, 0.4298780487804878, 0.4329268292682927, 0.4329268292682927, 0.4329268292682927, 0.4329268292682927, 0.45121951219512196, 0.4298780487804878, 0.4298780487804878, 0.4268292682926829, 0.4268292682926829, 0.4268292682926829, 0.4268292682926829, 0.4268292682926829, 0.43902439024390244, 0.4420731707317073, 0.4420731707317073, 0.4420731707317073, 0.4420731707317073, 0.4481707317073171, 0.4603658536585366, 0.4603658536585366, 0.4603658536585366, 0.4603658536585366, 0.4634146341463415, 0.46646341463414637, 0.46646341463414637, 0.4817073170731707, 0.5030487804878049, 0.5152439024390244, 0.5304878048780488, 0.5823170731707317, 0.6067073170731707, 0.6189024390243902, 0.6554878048780488, 0.7103658536585366, 0.8170731707317073], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MaoC_dehydratas.gap.json b/pfam_gap_rates/MaoC_dehydratas.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..084ec63ee47d66f629cb778151119f02765ef2d7
--- /dev/null
+++ b/pfam_gap_rates/MaoC_dehydratas.gap.json
@@ -0,0 +1 @@
+{"family": "MaoC_dehydratas", "n_seqs": 3923, "length": 127, "gap_rates": [0.9426459342340046, 0.8804486362477696, 0.7644659699209788, 0.5730308437420342, 0.5070099413713994, 0.47947998980372164, 0.45551873566148354, 0.4272240632169258, 0.39689013510068827, 0.3612031608462911, 0.45704817741524345, 0.25975019118021925, 0.1674738720367066, 0.13025745602854957, 0.10476676013255162, 0.08921743563599287, 0.07188376242671425, 0.9449400968646444, 0.05811878664287535, 0.055059903135355595, 0.05200101962783584, 0.04664797348967627, 0.029824114198317615, 0.02523578893703798, 0.022941626306398163, 0.021412184552638287, 0.02064746367575835, 0.24394595972470048, 0.021667091511598267, 0.01886311496303849, 0.017333673209278613, 0.015804231455518736, 0.015804231455518736, 0.016059138414478716, 0.014274789701758857, 0.014019882742798879, 0.01300025490695896, 0.014019882742798879, 0.014529696660718837, 0.015804231455518736, 0.9115472852408871, 0.018098394086158553, 0.018353301045118533, 0.017588580168238593, 0.018098394086158553, 0.016568952332398676, 0.014274789701758857, 0.014019882742798879, 0.010960999235279123, 0.008411929645679326, 0.007137394850879429, 0.00637267397399949, 0.00637267397399949, 0.00637267397399949, 0.006882487891919449, 0.006882487891919449, 0.006882487891919449, 0.007647208768799388, 0.007902115727759368, 0.008411929645679326, 0.009686464440479225, 0.009941371399439205, 0.010706092276319143, 0.011215906194239103, 0.011470813153199082, 0.012490440989039, 0.015039510578638797, 0.014274789701758857, 0.016314045373438696, 0.015294417537598776, 0.017843487127198573, 0.01962783583991843, 0.3933214376752485, 0.7767015039510579, 0.9390772368085649, 0.8445067550344124, 0.7099158807035432, 0.23706347183278104, 0.16365026765230692, 0.09890390007647208, 0.08666836604639307, 0.024980881978078, 0.022176905429518227, 0.02039255671679837, 0.02039255671679837, 0.01937292888095845, 0.01962783583991843, 0.01911802192199847, 0.02039255671679837, 0.02039255671679837, 0.02013764975783839, 0.020902370634718326, 0.021921998470558247, 0.022176905429518227, 0.023451440224318124, 0.02600050981391792, 0.028804486362477694, 0.03339281162375733, 0.035686974254397145, 0.03823604384399694, 0.04384399694111649, 0.05072648483303594, 0.056079530971195515, 0.06347183278103492, 0.07366811113943411, 0.08309966862095335, 0.0938057608972725, 0.9388223298496049, 0.1511598266632679, 0.17792505735406577, 0.20774917155238337, 0.24522049451950037, 0.2916135610502167, 0.8840173336732092, 0.39026255416772876, 0.437420341575325, 0.5307162885546776, 0.5330104511853173, 0.5618149375477951, 0.587815447361713, 0.6268162120825899, 0.6681111394341066, 0.7221514147336222, 0.7899566658169768, 0.8411929645679327, 0.887586031098649, 0.9339790976293653], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MarR.gap.json b/pfam_gap_rates/MarR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e1adbcab32d719888b29744b75478503ff403be
--- /dev/null
+++ b/pfam_gap_rates/MarR.gap.json
@@ -0,0 +1 @@
+{"family": "MarR", "n_seqs": 5000, "length": 60, "gap_rates": [0.4694, 0.3328, 0.2676, 0.194, 0.152, 0.1234, 0.0982, 0.0746, 0.0646, 0.0568, 0.052, 0.0484, 0.0472, 0.045, 0.0384, 0.0254, 0.0176, 0.9052, 0.0108, 0.008, 0.0056, 0.004, 0.0034, 0.003, 0.0028, 0.0022, 0.0018, 0.0008, 0.0006, 0.0006, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0004, 0.0004, 0.0004, 0.0004, 0.0004, 0.0006, 0.001, 0.0018, 0.0024, 0.0026, 0.003, 0.0048, 0.016, 0.0206, 0.029, 0.0376, 0.0532, 0.0482, 0.053, 0.0564, 0.0598, 0.1512, 0.66], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MauE.gap.json b/pfam_gap_rates/MauE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89bf7ad12a1df5b7b892a79df511b78c6b1e175e
--- /dev/null
+++ b/pfam_gap_rates/MauE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MazE_antitoxin.gap.json b/pfam_gap_rates/MazE_antitoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6df5fb8d7c87ae50ebe12b9210f15b553e1f825e
--- /dev/null
+++ b/pfam_gap_rates/MazE_antitoxin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mcm10.gap.json b/pfam_gap_rates/Mcm10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..183fc1380b6cc0b6a4d22b8e3df222d1eb4a2282
--- /dev/null
+++ b/pfam_gap_rates/Mcm10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med10.gap.json b/pfam_gap_rates/Med10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ab194e89817654c7291623e3ec0147af9b6b4ec
--- /dev/null
+++ b/pfam_gap_rates/Med10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med15.gap.json b/pfam_gap_rates/Med15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34905911c2504ea5d163edb726212d10dccaf7ff
--- /dev/null
+++ b/pfam_gap_rates/Med15.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med7.gap.json b/pfam_gap_rates/Med7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc9c953aca3f7a150270781f0b304cdc94fdc396
--- /dev/null
+++ b/pfam_gap_rates/Med7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MethyTransf_Reg.gap.json b/pfam_gap_rates/MethyTransf_Reg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f05c8c1f8f4884c94de2513dfefed6ee07a8efc
--- /dev/null
+++ b/pfam_gap_rates/MethyTransf_Reg.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_5.gap.json b/pfam_gap_rates/Methyltransf_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dca34a205f6a89ab628e0b43f06eddfe20a81589
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Microtub_bind.gap.json b/pfam_gap_rates/Microtub_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d4ab6476d01f26e72e6b1a035ad9fe7e98ba2e6
--- /dev/null
+++ b/pfam_gap_rates/Microtub_bind.gap.json
@@ -0,0 +1 @@
+{"family": "Microtub_bind", "n_seqs": 116, "length": 146, "gap_rates": [0.6379310344827587, 0.21551724137931033, 0.11206896551724138, 0.02586206896551724, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017241379310344827, 0.02586206896551724, 0.034482758620689655, 0.034482758620689655, 0.07758620689655173, 0.10344827586206896, 0.13793103448275862, 0.9396551724137931, 0.8620689655172413, 0.33620689655172414, 0.3448275862068966, 0.33620689655172414, 0.3448275862068966, 0.3706896551724138, 0.3706896551724138, 0.4224137931034483, 0.4224137931034483, 0.43103448275862066, 0.8275862068965517, 0.9310344827586207, 0.9396551724137931, 0.9051724137931034, 0.7413793103448276, 0.5775862068965517, 0.646551724137931, 0.9224137931034483, 0.8103448275862069, 0.6206896551724138, 0.5689655172413793, 0.5344827586206896, 0.5258620689655172, 0.5086206896551724, 0.5172413793103449, 0.5172413793103449, 0.5172413793103449, 0.5258620689655172, 0.5862068965517241, 0.9482758620689655, 0.6206896551724138, 0.5862068965517241, 0.5862068965517241, 0.5689655172413793, 0.5775862068965517, 0.6206896551724138, 0.8362068965517241, 0.6896551724137931, 0.646551724137931, 0.6206896551724138, 0.6206896551724138, 0.6206896551724138, 0.6206896551724138, 0.6293103448275862, 0.6379310344827587, 0.646551724137931, 0.646551724137931, 0.646551724137931, 0.7155172413793104, 0.7068965517241379, 0.7241379310344828, 0.6810344827586207, 0.6982758620689655, 0.6982758620689655, 0.6982758620689655, 0.6982758620689655, 0.7155172413793104, 0.7241379310344828, 0.7155172413793104, 0.7155172413793104, 0.7155172413793104, 0.7241379310344828, 0.7241379310344828, 0.7241379310344828, 0.7241379310344828, 0.7327586206896551, 0.7327586206896551, 0.7327586206896551, 0.7327586206896551, 0.7327586206896551, 0.75, 0.75, 0.75, 0.7758620689655172, 0.7758620689655172, 0.7586206896551724, 0.7672413793103449, 0.7758620689655172, 0.8275862068965517, 0.8362068965517241, 0.8362068965517241, 0.8275862068965517, 0.8103448275862069, 0.8189655172413793, 0.8103448275862069, 0.8189655172413793, 0.8189655172413793, 0.8189655172413793, 0.8189655172413793, 0.8189655172413793, 0.8189655172413793, 0.8189655172413793, 0.8189655172413793, 0.8189655172413793, 0.8275862068965517, 0.8275862068965517, 0.8275862068965517, 0.8275862068965517, 0.8275862068965517, 0.8275862068965517, 0.8275862068965517, 0.8275862068965517, 0.8362068965517241, 0.8706896551724138, 0.9137931034482759], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MlaA.gap.json b/pfam_gap_rates/MlaA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b557c686c3ebf825dfbade970610ef5341d975c
--- /dev/null
+++ b/pfam_gap_rates/MlaA.gap.json
@@ -0,0 +1 @@
+{"family": "MlaA", "n_seqs": 557, "length": 208, "gap_rates": [0.17953321364452424, 0.0466786355475763, 0.04308797127468582, 0.03590664272890485, 0.03052064631956912, 0.02872531418312388, 0.025134649910233394, 0.025134649910233394, 0.025134649910233394, 0.02333931777378815, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.895870736086176, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.02333931777378815, 0.02333931777378815, 0.02333931777378815, 0.019748653500897665, 0.019748653500897665, 0.02154398563734291, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.019748653500897665, 0.019748653500897665, 0.04488330341113106, 0.03949730700179533, 0.019748653500897665, 0.019748653500897665, 0.02154398563734291, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.017953321364452424, 0.017953321364452424, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.02154398563734291, 0.02154398563734291, 0.02154398563734291, 0.02872531418312388, 0.02333931777378815, 0.026929982046678635, 0.03231597845601436, 0.02333931777378815, 0.02333931777378815, 0.02333931777378815, 0.02154398563734291, 0.02154398563734291, 0.02154398563734291, 0.02154398563734291, 0.02154398563734291, 0.9353680430879713, 0.02154398563734291, 0.02333931777378815, 0.9317773788150808, 0.026929982046678635, 0.9210053859964094, 0.02333931777378815, 0.02872531418312388, 0.02154398563734291, 0.02154398563734291, 0.933572710951526, 0.02154398563734291, 0.02154398563734291, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.019748653500897665, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.01615798922800718, 0.01615798922800718, 0.01615798922800718, 0.01615798922800718, 0.01615798922800718, 0.01615798922800718, 0.01436265709156194, 0.012567324955116697, 0.012567324955116697, 0.01436265709156194, 0.01615798922800718, 0.01436265709156194, 0.01436265709156194, 0.01436265709156194, 0.01436265709156194, 0.01436265709156194, 0.01436265709156194, 0.01436265709156194, 0.01436265709156194, 0.025134649910233394, 0.01615798922800718, 0.01436265709156194, 0.01436265709156194, 0.01615798922800718, 0.01436265709156194, 0.01436265709156194, 0.01436265709156194, 0.9425493716337523, 0.05026929982046679, 0.02154398563734291, 0.017953321364452424, 0.01615798922800718, 0.6157989228007181, 0.7522441651705566, 0.9048473967684022, 0.9497307001795332, 0.9299820466786356, 0.8581687612208259, 0.6391382405745063, 0.5314183123877917, 0.09874326750448834, 0.07001795332136446, 0.05385996409335727, 0.04847396768402154, 0.03949730700179533, 0.03590664272890485, 0.03411131059245961, 0.03052064631956912, 0.03052064631956912, 0.026929982046678635, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.026929982046678635, 0.026929982046678635, 0.026929982046678635, 0.026929982046678635, 0.026929982046678635, 0.02872531418312388, 0.02872531418312388, 0.08617594254937164, 0.0843806104129264, 0.8420107719928187, 0.026929982046678635, 0.026929982046678635, 0.026929982046678635, 0.026929982046678635, 0.4631956912028725, 0.12926391382405744, 0.12387791741472172, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.03590664272890485, 0.03590664272890485, 0.03590664272890485, 0.04847396768402154, 0.11490125673249552, 0.3357271095152603], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MmcB-like.gap.json b/pfam_gap_rates/MmcB-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1abe9cf7e3690faa20c1896ebd6a3a0d281823a3
--- /dev/null
+++ b/pfam_gap_rates/MmcB-like.gap.json
@@ -0,0 +1 @@
+{"family": "MmcB-like", "n_seqs": 170, "length": 150, "gap_rates": [0.9176470588235294, 0.8176470588235294, 0.7764705882352941, 0.7352941176470589, 0.6647058823529411, 0.6470588235294118, 0.6352941176470588, 0.611764705882353, 0.5588235294117647, 0.5058823529411764, 0.4588235294117647, 0.4, 0.3411764705882353, 0.31176470588235294, 0.13529411764705881, 0.07647058823529412, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.047058823529411764, 0.041176470588235294, 0.03529411764705882, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.023529411764705882, 0.023529411764705882, 0.029411764705882353, 0.023529411764705882, 0.011764705882352941, 0.01764705882352941, 0.0, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.9470588235294117, 0.9470588235294117, 0.9411764705882353, 0.011764705882352941, 0.011764705882352941, 0.023529411764705882, 0.9411764705882353, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.03529411764705882, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.08823529411764706, 0.09411764705882353, 0.12352941176470589, 0.16470588235294117, 0.19411764705882353, 0.2235294117647059, 0.36470588235294116], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MmgE_PrpD.gap.json b/pfam_gap_rates/MmgE_PrpD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa2649d77cdfba7f7bb80219027b279ce534ccf3
--- /dev/null
+++ b/pfam_gap_rates/MmgE_PrpD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mnd1.gap.json b/pfam_gap_rates/Mnd1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2ae7fa28c8c0c9c401eba9f3b8175953bb5ea7e
--- /dev/null
+++ b/pfam_gap_rates/Mnd1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MoCF_biosynth.gap.json b/pfam_gap_rates/MoCF_biosynth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b828abf421e11b84bbf01b96e5c8ed548e83d44
--- /dev/null
+++ b/pfam_gap_rates/MoCF_biosynth.gap.json
@@ -0,0 +1 @@
+{"family": "MoCF_biosynth", "n_seqs": 5000, "length": 190, "gap_rates": [0.4334, 0.1144, 0.0606, 0.0476, 0.0426, 0.0376, 0.037, 0.0362, 0.036, 0.0366, 0.6254, 0.629, 0.6346, 0.926, 0.648, 0.63, 0.6264, 0.6252, 0.0344, 0.0312, 0.1222, 0.1212, 0.0286, 0.0274, 0.026, 0.025, 0.0238, 0.0214, 0.0204, 0.0196, 0.0188, 0.0182, 0.017, 0.0164, 0.0166, 0.0212, 0.9412, 0.0178, 0.0164, 0.0166, 0.0174, 0.0148, 0.0138, 0.0314, 0.0136, 0.0142, 0.0114, 0.011, 0.0106, 0.0106, 0.011, 0.0296, 0.0148, 0.0108, 0.0104, 0.0092, 0.009, 0.0092, 0.0096, 0.9238, 0.875, 0.0204, 0.0244, 0.0226, 0.0976, 0.0266, 0.0158, 0.0292, 0.8174, 0.6926, 0.0068, 0.0064, 0.0064, 0.0064, 0.0062, 0.0068, 0.007, 0.0078, 0.0082, 0.008, 0.008, 0.0076, 0.0076, 0.0082, 0.008, 0.008, 0.0084, 0.0086, 0.0092, 0.0088, 0.009, 0.0102, 0.0108, 0.0128, 0.016, 0.0186, 0.1952, 0.431, 0.4298, 0.4288, 0.4252, 0.4182, 0.3602, 0.0312, 0.0224, 0.0194, 0.0202, 0.0182, 0.0198, 0.0224, 0.0228, 0.0244, 0.1908, 0.301, 0.3122, 0.7442, 0.7446, 0.7454, 0.7462, 0.7466, 0.7472, 0.7492, 0.75, 0.7506, 0.7532, 0.7696, 0.7936, 0.9456, 0.9498, 0.9276, 0.782, 0.7554, 0.7508, 0.7502, 0.7494, 0.7488, 0.747, 0.7466, 0.7458, 0.7448, 0.7444, 0.7436, 0.3464, 0.3534, 0.352, 0.0548, 0.0438, 0.0454, 0.0436, 0.33, 0.3438, 0.3342, 0.114, 0.2054, 0.3294, 0.5658, 0.6584, 0.6914, 0.9338, 0.6716, 0.6406, 0.3844, 0.2818, 0.0568, 0.5952, 0.0356, 0.0344, 0.0344, 0.0344, 0.0344, 0.0346, 0.0358, 0.037, 0.038, 0.0402, 0.0412, 0.042, 0.043, 0.044, 0.0456, 0.049, 0.054, 0.0598, 0.0862, 0.3968, 0.184, 0.216, 0.2522, 0.4994, 0.8246], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MobC.gap.json b/pfam_gap_rates/MobC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62b12d1ecbb82afde6d664bd2834086bb1aa5b5d
--- /dev/null
+++ b/pfam_gap_rates/MobC.gap.json
@@ -0,0 +1 @@
+{"family": "MobC", "n_seqs": 695, "length": 50, "gap_rates": [0.8388489208633093, 0.6446043165467625, 0.4446043165467626, 0.2805755395683453, 0.1381294964028777, 0.12949640287769784, 0.11942446043165468, 0.014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0028776978417266188, 0.0028776978417266188, 0.8316546762589928, 0.9064748201438849, 0.9381294964028777, 0.8690647482014389, 0.4244604316546763, 0.19568345323741007, 0.09784172661870504, 0.08920863309352518, 0.09064748201438849, 0.1251798561151079, 0.14388489208633093, 0.17985611510791366, 0.2, 0.21726618705035972, 0.2316546762589928, 0.24316546762589927, 0.2489208633093525, 0.2489208633093525, 0.25755395683453236, 0.26618705035971224, 0.2733812949640288, 0.27913669064748203, 0.2935251798561151, 0.3194244604316547, 0.3410071942446043, 0.37553956834532376, 0.49928057553956834, 0.5338129496402878, 0.6014388489208633, 0.6964028776978417, 0.8100719424460432], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MoeA_N.gap.json b/pfam_gap_rates/MoeA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6c02b4cb00b9c37176997c726ea5782cad59e69
--- /dev/null
+++ b/pfam_gap_rates/MoeA_N.gap.json
@@ -0,0 +1 @@
+{"family": "MoeA_N", "n_seqs": 2292, "length": 184, "gap_rates": [0.9057591623036649, 0.4480802792321117, 0.29232111692844676, 0.2198952879581152, 0.18019197207678883, 0.1631762652705061, 0.15095986038394416, 0.13961605584642234, 0.14136125654450263, 0.1273996509598604, 0.12478184991273997, 0.12216404886561955, 0.11954624781849912, 0.12085514834205933, 0.055410122164048864, 0.07068062827225131, 0.09554973821989529, 0.7918848167539267, 0.9197207678883071, 0.8765270506108203, 0.48778359511343805, 0.08420593368237347, 0.06762652705061083, 0.049738219895287955, 0.10253054101221641, 0.054537521815008726, 0.0462478184991274, 0.03577661431064572, 0.9205933682373473, 0.03795811518324607, 0.037085514834205933, 0.0318499127399651, 0.030541012216404886, 0.027923211169284468, 0.027923211169284468, 0.02617801047120419, 0.02443280977312391, 0.02443280977312391, 0.02399650959860384, 0.02356020942408377, 0.0231239092495637, 0.02181500872600349, 0.02181500872600349, 0.02137870855148342, 0.02225130890052356, 0.02137870855148342, 0.02137870855148342, 0.02137870855148342, 0.02137870855148342, 0.02137870855148342, 0.02181500872600349, 0.02137870855148342, 0.02137870855148342, 0.020942408376963352, 0.01614310645724258, 0.015270506108202443, 0.015270506108202443, 0.015270506108202443, 0.015706806282722512, 0.014834205933682374, 0.02006980802792321, 0.02050610820244328, 0.020942408376963352, 0.02268760907504363, 0.02356020942408377, 0.02574171029668412, 0.027923211169284468, 0.028795811518324606, 0.04275741710296684, 0.09991273996509599, 0.1099476439790576, 0.11474694589877836, 0.15357766143106458, 0.2600349040139616, 0.43324607329842935, 0.6217277486910995, 0.6644851657940664, 0.9485165794066318, 0.9192844677137871, 0.6365619546247818, 0.5445026178010471, 0.3320244328097731, 0.1823734729493892, 0.12696335078534032, 0.11125654450261781, 0.10776614310645724, 0.05715532286212915, 0.03664921465968586, 0.028359511343804537, 0.027050610820244327, 0.024869109947643978, 0.02268760907504363, 0.02225130890052356, 0.020942408376963352, 0.02006980802792321, 0.02006980802792321, 0.015706806282722512, 0.04101221640488656, 0.017452006980802792, 0.01614310645724258, 0.015706806282722512, 0.01614310645724258, 0.015270506108202443, 0.015270506108202443, 0.015706806282722512, 0.01614310645724258, 0.015706806282722512, 0.015706806282722512, 0.01614310645724258, 0.017015706806282723, 0.01788830715532286, 0.01788830715532286, 0.01832460732984293, 0.01788830715532286, 0.01788830715532286, 0.018760907504363003, 0.01832460732984293, 0.018760907504363003, 0.018760907504363003, 0.018760907504363003, 0.019197207678883072, 0.020942408376963352, 0.8023560209424084, 0.2604712041884817, 0.0506108202443281, 0.9493891797556719, 0.8808900523560209, 0.02268760907504363, 0.02530541012216405, 0.02530541012216405, 0.02617801047120419, 0.0274869109947644, 0.03795811518324607, 0.43717277486910994, 0.712478184991274, 0.7971204188481675, 0.8704188481675392, 0.9332460732984293, 0.9153577661431065, 0.8328970331588132, 0.7648342059336823, 0.6330715532286213, 0.09904013961605584, 0.027923211169284468, 0.02617801047120419, 0.02530541012216405, 0.02530541012216405, 0.02530541012216405, 0.02006980802792321, 0.02443280977312391, 0.019197207678883072, 0.01963350785340314, 0.020942408376963352, 0.02137870855148342, 0.02137870855148342, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.02137870855148342, 0.02268760907504363, 0.02356020942408377, 0.02443280977312391, 0.02530541012216405, 0.02530541012216405, 0.0318499127399651, 0.031413612565445025, 0.029232111692844676, 0.027050610820244327, 0.028795811518324606, 0.026614310645724257, 0.0274869109947644, 0.0274869109947644, 0.0274869109947644, 0.028359511343804537, 0.029232111692844676, 0.030541012216404886, 0.030977312390924956, 0.032722513089005235, 0.033595113438045374, 0.034904013961605584, 0.04013961605584642, 0.051047120418848166, 0.08944153577661432, 0.193717277486911], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mog1.gap.json b/pfam_gap_rates/Mog1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fc773066b0eef230cd389da6663853882c97dae
--- /dev/null
+++ b/pfam_gap_rates/Mog1.gap.json
@@ -0,0 +1 @@
+{"family": "Mog1", "n_seqs": 249, "length": 192, "gap_rates": [0.8433734939759037, 0.1606425702811245, 0.0963855421686747, 0.09236947791164658, 0.08835341365461848, 0.08433734939759036, 0.08433734939759036, 0.08032128514056225, 0.07630522088353414, 0.07630522088353414, 0.07630522088353414, 0.07630522088353414, 0.07630522088353414, 0.07630522088353414, 0.08032128514056225, 0.07630522088353414, 0.06827309236947791, 0.0642570281124498, 0.05622489959839357, 0.04417670682730924, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.0321285140562249, 0.040160642570281124, 0.040160642570281124, 0.03614457831325301, 0.0321285140562249, 0.0321285140562249, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.9076305220883534, 0.9236947791164659, 0.9357429718875502, 0.9437751004016064, 0.9477911646586346, 0.9437751004016064, 0.9397590361445783, 0.9236947791164659, 0.9156626506024096, 0.9036144578313253, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.028112449799196786, 0.028112449799196786, 0.20481927710843373, 0.7550200803212851, 0.7751004016064257, 0.9317269076305221, 0.9437751004016064, 0.9477911646586346, 0.9477911646586346, 0.9397590361445783, 0.7951807228915663, 0.7630522088353414, 0.7389558232931727, 0.05220883534136546, 0.04417670682730924, 0.04417670682730924, 0.04819277108433735, 0.04417670682730924, 0.03614457831325301, 0.0321285140562249, 0.0321285140562249, 0.03614457831325301, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04819277108433735, 0.04819277108433735, 0.08032128514056225, 0.27309236947791166, 0.6706827309236948, 0.8152610441767069, 0.8714859437751004, 0.9317269076305221, 0.9437751004016064, 0.9076305220883534, 0.8634538152610441, 0.6827309236947792, 0.6465863453815262, 0.26104417670682734, 0.20481927710843373, 0.18473895582329317, 0.17670682730923695, 0.20080321285140562, 0.18875502008032127, 0.17670682730923695, 0.18875502008032127, 0.20080321285140562, 0.11646586345381527, 0.39357429718875503, 0.4497991967871486, 0.5783132530120482, 0.8232931726907631, 0.8835341365461847, 0.8955823293172691, 0.9076305220883534, 0.9156626506024096, 0.9397590361445783, 0.9437751004016064, 0.9236947791164659, 0.9076305220883534, 0.9076305220883534, 0.8875502008032129, 0.8514056224899599, 0.6265060240963856, 0.5100401606425703, 0.42168674698795183, 0.357429718875502, 0.25301204819277107, 0.11244979919678715, 0.0963855421686747, 0.07228915662650602, 0.07228915662650602, 0.0642570281124498, 0.060240963855421686, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05220883534136546, 0.05622489959839357, 0.9477911646586346, 0.11646586345381527, 0.09236947791164658, 0.08835341365461848, 0.07630522088353414, 0.07630522088353414, 0.08032128514056225, 0.08835341365461848, 0.10040160642570281, 0.0963855421686747, 0.40963855421686746, 0.40160642570281124, 0.9116465863453815, 0.927710843373494, 0.9437751004016064, 0.9477911646586346, 0.9397590361445783, 0.9196787148594378, 0.8755020080321285, 0.0963855421686747, 0.07630522088353414, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.9477911646586346, 0.07228915662650602, 0.07228915662650602, 0.08032128514056225, 0.08032128514056225, 0.08032128514056225, 0.08032128514056225, 0.08032128514056225, 0.08032128514056225, 0.08032128514056225, 0.08032128514056225, 0.08433734939759036, 0.10040160642570281, 0.1285140562248996, 0.17269076305220885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mor.gap.json b/pfam_gap_rates/Mor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33e54d24962a0083c91dad08aaa8ab8252097bcf
--- /dev/null
+++ b/pfam_gap_rates/Mor.gap.json
@@ -0,0 +1 @@
+{"family": "Mor", "n_seqs": 268, "length": 138, "gap_rates": [0.9067164179104478, 0.8694029850746269, 0.8544776119402985, 0.8470149253731343, 0.8470149253731343, 0.8470149253731343, 0.8432835820895522, 0.8283582089552238, 0.8208955223880597, 0.8134328358208955, 0.8134328358208955, 0.8097014925373134, 0.8097014925373134, 0.7947761194029851, 0.7947761194029851, 0.7761194029850746, 0.7611940298507462, 0.746268656716418, 0.7164179104477612, 0.7126865671641791, 0.7052238805970149, 0.8134328358208955, 0.6268656716417911, 0.6007462686567164, 0.5410447761194029, 0.4925373134328358, 0.4253731343283582, 0.3694029850746269, 0.3358208955223881, 0.31716417910447764, 0.26865671641791045, 0.25, 0.13805970149253732, 0.07462686567164178, 0.05970149253731343, 0.055970149253731345, 0.05223880597014925, 0.04477611940298507, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.022388059701492536, 0.832089552238806, 0.832089552238806, 0.832089552238806, 0.832089552238806, 0.8432835820895522, 0.8582089552238806, 0.8470149253731343, 0.8432835820895522, 0.832089552238806, 0.832089552238806, 0.832089552238806, 0.832089552238806, 0.018656716417910446, 0.029850746268656716, 0.07835820895522388, 0.048507462686567165, 0.029850746268656716, 0.9365671641791045, 0.9365671641791045, 0.9365671641791045, 0.9365671641791045, 0.9365671641791045, 0.9477611940298507, 0.9402985074626866, 0.9365671641791045, 0.9365671641791045, 0.9365671641791045, 0.9365671641791045, 0.9291044776119403, 0.022388059701492536, 0.022388059701492536, 0.029850746268656716, 0.026119402985074626, 0.018656716417910446, 0.033582089552238806, 0.026119402985074626, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.011194029850746268, 0.007462686567164179, 0.9104477611940298, 0.9328358208955224, 0.9402985074626866, 0.9477611940298507, 0.9328358208955224, 0.9291044776119403, 0.5373134328358209, 0.007462686567164179, 0.018656716417910446, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.018656716417910446, 0.018656716417910446, 0.05223880597014925, 0.06716417910447761, 0.13059701492537312, 0.2537313432835821, 0.332089552238806, 0.44402985074626866, 0.5373134328358209, 0.6343283582089553, 0.667910447761194, 0.7164179104477612, 0.7649253731343284, 0.8171641791044776, 0.835820895522388, 0.8619402985074627, 0.8805970149253731, 0.8917910447761194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MotA_ExbB.gap.json b/pfam_gap_rates/MotA_ExbB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c29c33a3811388e35173f0b4053074fd04cae806
--- /dev/null
+++ b/pfam_gap_rates/MotA_ExbB.gap.json
@@ -0,0 +1 @@
+{"family": "MotA_ExbB", "n_seqs": 4274, "length": 135, "gap_rates": [0.8001871782873187, 0.6389798783341133, 0.531118390266729, 0.46116050538137576, 0.42466073935423493, 0.40079550772110434, 0.3823116518483856, 0.36991109031352365, 0.3607861488067384, 0.34955545156761814, 0.3406644829199813, 0.3359850257370145, 0.3329433785680861, 0.5095928872250819, 0.4918109499298081, 0.24216190921853065, 0.4747309312119794, 0.612540945250351, 0.7784277023865231, 0.7948058025269069, 0.8231165184838559, 0.8490875058493215, 0.8036967711745437, 0.7849789424426766, 0.7660271408516612, 0.5362657931679925, 0.4620963968179691, 0.15184838558727187, 0.13125877398221805, 0.1188582124473561, 0.10973327094057089, 0.10364997660271409, 0.09803462798315396, 0.09171736078614881, 0.08820776789892372, 0.08469817501169864, 0.07814693495554516, 0.07346747777257838, 0.06972391202620495, 0.06621431913897988, 0.062236780533458116, 0.0584932147870847, 0.052877866167524566, 0.049602246139447824, 0.043284978942442674, 0.03883949461862424, 0.03228825456247075, 0.02924660739354235, 0.026204960224613945, 0.02339728591483388, 0.019653720168460457, 0.018015910154422086, 0.014506317267197005, 0.013102480112306972, 0.012166588675713618, 0.011230697239120261, 0.010996724379971923, 0.010060832943378568, 0.00959288722508189, 0.00959288722508189, 0.009124941506785214, 0.008890968647636874, 0.008189050070191857, 0.007487131492746842, 0.006551240056153486, 0.006317267197005147, 0.006317267197005147, 0.006317267197005147, 0.006785212915301825, 0.006785212915301825, 0.006785212915301825, 0.006317267197005147, 0.006317267197005147, 0.005615348619560131, 0.004211511464670099, 0.004445484323818437, 0.004913430042115114, 0.004679457182966776, 0.004679457182966776, 0.004211511464670099, 0.004913430042115114, 0.004445484323818437, 0.9291062236780534, 0.004679457182966776, 0.32288254562470753, 0.31258773982218063, 0.3270940570893776, 0.05872718764623304, 0.8837154890032756, 0.2737482452035564, 0.1846045858680393, 0.00772110435189518, 0.006317267197005147, 0.00584932147870847, 0.005615348619560131, 0.004913430042115114, 0.004913430042115114, 0.005147402901263453, 0.005147402901263453, 0.0053813757604117924, 0.005147402901263453, 0.004913430042115114, 0.005147402901263453, 0.004913430042115114, 0.004913430042115114, 0.004913430042115114, 0.004679457182966776, 0.004913430042115114, 0.0053813757604117924, 0.006083294337856809, 0.006785212915301825, 0.008656995788488536, 0.7138511932615816, 0.011230697239120261, 0.012400561534861956, 0.015208235844642022, 0.01754796443612541, 0.018483855872718766, 0.02152550304164717, 0.025503041647168927, 0.029714553111839025, 0.03369209171736079, 0.03837154890032756, 0.0416471689284043, 0.048900327562002806, 0.056621431913897985, 0.0645765091249415, 0.07253158633598503, 0.09124941506785213, 0.1188582124473561, 0.1621431913897988, 0.22976134768366868, 0.3093121197941039, 0.3916705662143191, 0.5570893776321947], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mqo.gap.json b/pfam_gap_rates/Mqo.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b849d908f5aa59cbb14cf214178e0a207db971a1
--- /dev/null
+++ b/pfam_gap_rates/Mqo.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MraZ.gap.json b/pfam_gap_rates/MraZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d12f68250a26cd0678ece791f3ca7e0d67da70f
--- /dev/null
+++ b/pfam_gap_rates/MraZ.gap.json
@@ -0,0 +1 @@
+{"family": "MraZ", "n_seqs": 3369, "length": 74, "gap_rates": [0.36212525972098547, 0.18076580587711488, 0.11308993766696349, 0.08014247551202137, 0.06826951617690709, 0.05491243692490353, 0.03977441377263283, 0.024339566636984267, 0.014841199168892847, 0.010092015434847135, 0.01068566340160285, 0.009795191451469279, 0.009201543484713566, 0.008607895517957851, 0.008607895517957851, 0.007123775601068566, 0.006530127634312852, 0.006233303650934996, 0.004749183734045711, 0.004749183734045711, 0.004749183734045711, 0.004452359750667854, 0.004155535767289997, 0.004452359750667854, 0.004452359750667854, 0.004155535767289997, 0.005639655684179281, 0.00771742356782428, 0.008904719501335707, 0.8426832888097359, 0.8738498070644108, 0.8343722172751559, 0.3066191748293262, 0.01840308696942713, 0.014841199168892847, 0.014544375185514989, 0.015138023152270703, 0.015731671119026416, 0.016028495102404273, 0.01543484713564856, 0.015138023152270703, 0.016325319085782133, 0.01662214306915999, 0.016325319085782133, 0.01662214306915999, 0.01751261501929356, 0.018699910952804988, 0.018699910952804988, 0.019590382902938557, 0.023449094686850698, 0.030276046304541407, 0.0365093499554764, 0.04125853368952211, 0.051350549124369246, 0.07272187592757495, 0.0819234194122885, 0.0917186108637578, 0.10299792223211636, 0.3757791629563669, 0.22796081923419412, 0.21252597209854557, 0.2356782428020184, 0.2873256159097655, 0.2977144553279905, 0.3119620065301276, 0.3300682695161769, 0.3591570198872069, 0.39240130602552686, 0.41614722469575544, 0.45918670228554465, 0.5179578509943603, 0.5577322647669932, 0.5957257346393589, 0.636984268328881], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mre11_DNA_bind.gap.json b/pfam_gap_rates/Mre11_DNA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cdcd2fe54df14069b14c230e28ffc335d2b117a
--- /dev/null
+++ b/pfam_gap_rates/Mre11_DNA_bind.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mss4.gap.json b/pfam_gap_rates/Mss4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ff419835fc5a0734eb60704433f04bec9d6b836
--- /dev/null
+++ b/pfam_gap_rates/Mss4.gap.json
@@ -0,0 +1 @@
+{"family": "Mss4", "n_seqs": 158, "length": 122, "gap_rates": [0.9493670886075949, 0.5316455696202531, 0.5126582278481012, 0.4810126582278481, 0.4810126582278481, 0.47468354430379744, 0.47468354430379744, 0.46835443037974683, 0.46835443037974683, 0.4620253164556962, 0.44936708860759494, 0.43037974683544306, 0.43037974683544306, 0.4240506329113924, 0.9177215189873418, 0.4873417721518987, 0.4240506329113924, 0.3987341772151899, 0.36075949367088606, 0.3291139240506329, 0.3291139240506329, 0.3291139240506329, 0.3291139240506329, 0.3227848101265823, 0.310126582278481, 0.310126582278481, 0.9493670886075949, 0.8227848101265823, 0.6835443037974683, 0.6329113924050633, 0.5443037974683544, 0.41139240506329117, 0.2974683544303797, 0.2974683544303797, 0.2468354430379747, 0.21518987341772153, 0.20253164556962025, 0.18354430379746836, 0.14556962025316456, 0.13291139240506328, 0.13291139240506328, 0.08227848101265822, 0.0379746835443038, 0.012658227848101266, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9493670886075949, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0379746835443038, 0.0, 0.0, 0.9240506329113924, 0.9493670886075949, 0.7658227848101266, 0.0, 0.0, 0.0, 0.740506329113924, 0.7468354430379747, 0.7784810126582279, 0.8164556962025317, 0.8417721518987342, 0.8544303797468354, 0.879746835443038, 0.8860759493670886, 0.930379746835443, 0.9493670886075949, 0.8860759493670886, 0.8860759493670886, 0.8544303797468354, 0.8544303797468354, 0.8354430379746836, 0.7911392405063291, 0.7531645569620253, 0.7468354430379747, 0.740506329113924, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.0189873417721519, 0.05063291139240506, 0.056962025316455694, 0.10759493670886076, 0.18354430379746836, 0.20253164556962025, 0.21518987341772153, 0.7658227848101266, 0.21518987341772153, 0.2088607594936709, 0.22151898734177214, 0.24050632911392406, 0.25316455696202533, 0.25316455696202533, 0.27848101265822783, 0.4810126582278481, 0.7088607594936709], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MttA_Hcf106.gap.json b/pfam_gap_rates/MttA_Hcf106.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b06525f671b59df2755025c20ed823024b403f8
--- /dev/null
+++ b/pfam_gap_rates/MttA_Hcf106.gap.json
@@ -0,0 +1 @@
+{"family": "MttA_Hcf106", "n_seqs": 2337, "length": 58, "gap_rates": [0.2948224219084296, 0.12152332049636286, 0.06546854942233633, 0.029097133076593923, 0.01797175866495507, 0.01198117244330338, 0.010269576379974325, 0.009413778348309799, 0.008557980316645272, 0.007274283269148481, 0.0068463842533162175, 0.006418485237483954, 0.005134788189987163, 0.0025673940949935813, 0.002139495079161318, 0.0008557980316645272, 0.0008557980316645272, 0.0008557980316645272, 0.009413778348309799, 0.0025673940949935813, 0.0012836970474967907, 0.0008557980316645272, 0.0008557980316645272, 0.0017115960633290544, 0.002139495079161318, 0.007274283269148481, 0.007274283269148481, 0.01198117244330338, 0.01668806161745828, 0.023106546854942234, 0.03508771929824561, 0.07060333761232349, 0.07916131792896876, 0.08643560119811725, 0.09670517757809156, 0.10868635002139496, 0.11253744116388532, 0.1210954214805306, 0.13222079589216945, 0.13521608900299528, 0.14634146341463414, 0.15789473684210525, 0.1690201112537441, 0.181857081728712, 0.20282413350449294, 0.25759520753102266, 0.8925973470261018, 0.9054343175010697, 0.9465126230209671, 0.9246897732135216, 0.8943089430894309, 0.8904578519469405, 0.3889602053915276, 0.5220367993153616, 0.5832263585793752, 0.6636713735558408, 0.7608044501497646, 0.9015832263585793], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MucBP.gap.json b/pfam_gap_rates/MucBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2f4d06d445cb9f803958ab0e040cffb811179a8
--- /dev/null
+++ b/pfam_gap_rates/MucBP.gap.json
@@ -0,0 +1 @@
+{"family": "MucBP", "n_seqs": 827, "length": 97, "gap_rates": [0.5695284159613059, 0.23337363966142685, 0.10640870616686819, 0.08101571946795647, 0.07013301088270858, 0.06650544135429262, 0.05078597339782346, 0.036275695284159616, 0.03143893591293833, 0.030229746070133012, 0.041112454655380895, 0.026602176541717048, 0.8573155985489722, 0.909310761789601, 0.9443772672309553, 0.9189842805320435, 0.8960096735187424, 0.7218863361547763, 0.03385731559854897, 0.04836759371221282, 0.032648125755743655, 0.03143893591293833, 0.020556227327690448, 0.02418379685610641, 0.02176541717049577, 0.015719467956469165, 0.020556227327690448, 0.9214026602176542, 0.8972188633615478, 0.022974607013301087, 0.020556227327690448, 0.9032648125755743, 0.8875453446191052, 0.009673518742442563, 0.008464328899637243, 0.009673518742442563, 0.008464328899637243, 0.008464328899637243, 0.008464328899637243, 0.013301088270858524, 0.9334945586457074, 0.9480048367593712, 0.9359129383313181, 0.9226118500604595, 0.030229746070133012, 0.9359129383313181, 0.04232164449818621, 0.03143893591293833, 0.03506650544135429, 0.03869407496977025, 0.013301088270858524, 0.8706166868198307, 0.8827085852478839, 0.9214026602176542, 0.9383313180169287, 0.9492140266021766, 0.9286577992744861, 0.9020556227327691, 0.8802902055622733, 0.8573155985489722, 0.013301088270858524, 0.014510278113663845, 0.019347037484885126, 0.016928657799274487, 0.03385731559854897, 0.03385731559854897, 0.06650544135429262, 0.7230955259975816, 0.8948004836759371, 0.9201934703748489, 0.9359129383313181, 0.9480048367593712, 0.9286577992744861, 0.9105199516324063, 0.8162031438935913, 0.6747279322853688, 0.05078597339782346, 0.06771463119709795, 0.0592503022974607, 0.05441354292623942, 0.06287787182587666, 0.06166868198307134, 0.13180169286577992, 0.10640870616686819, 0.1003627569528416, 0.09915356711003627, 0.09915356711003627, 0.10761789600967352, 0.10399032648125756, 0.10399032648125756, 0.9310761789600968, 0.11124546553808948, 0.11487303506650544, 0.12454655380894801, 0.13059250302297462, 0.13905683192261184, 0.37605804111245467], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Myb_DNA-bind_2.gap.json b/pfam_gap_rates/Myb_DNA-bind_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad03a1134d9a9cfa279e8e1c05d1edf27fd2e638
--- /dev/null
+++ b/pfam_gap_rates/Myb_DNA-bind_2.gap.json
@@ -0,0 +1 @@
+{"family": "Myb_DNA-bind_2", "n_seqs": 164, "length": 78, "gap_rates": [0.5914634146341463, 0.15853658536585366, 0.11585365853658537, 0.06707317073170732, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.2073170731707317, 0.15853658536585366, 0.13414634146341464, 0.018292682926829267, 0.018292682926829267, 0.036585365853658534, 0.04878048780487805, 0.9085365853658537, 0.8414634146341463, 0.17682926829268292, 0.04878048780487805, 0.036585365853658534, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.9390243902439024, 0.9390243902439024, 0.9390243902439024, 0.006097560975609756, 0.012195121951219513, 0.0, 0.006097560975609756, 0.8597560975609756, 0.8780487804878049, 0.926829268292683, 0.8902439024390244, 0.8658536585365854, 0.8353658536585366, 0.012195121951219513, 0.9451219512195121, 0.9451219512195121, 0.42073170731707316, 0.9329268292682927, 0.024390243902439025, 0.024390243902439025, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.03048780487804878, 0.036585365853658534, 0.042682926829268296, 0.07926829268292683, 0.21951219512195122, 0.29878048780487804, 0.40853658536585363, 0.5060975609756098, 0.6158536585365854, 0.725609756097561, 0.7804878048780488, 0.8780487804878049], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Myosin_TH1.gap.json b/pfam_gap_rates/Myosin_TH1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8301cacbee050131a9d40d6d33a98758723b21a0
--- /dev/null
+++ b/pfam_gap_rates/Myosin_TH1.gap.json
@@ -0,0 +1 @@
+{"family": "Myosin_TH1", "n_seqs": 641, "length": 242, "gap_rates": [0.33073322932917315, 0.31357254290171604, 0.28549141965678626, 0.2745709828393136, 0.2589703588143526, 0.24804992199687986, 0.23556942277691106, 0.2121684867394696, 0.20124804992199688, 0.1918876755070203, 0.187207488299532, 0.1809672386895476, 0.1809672386895476, 0.1856474258970359, 0.17784711388455537, 0.17784711388455537, 0.17784711388455537, 0.1747269890795632, 0.3213728549141966, 0.3166926677067083, 0.7737909516380655, 0.7722308892355694, 0.17160686427457097, 0.16380655226209048, 0.16380655226209048, 0.1622464898595944, 0.14040561622464898, 0.11232449297971919, 0.10764430577223089, 0.1029641185647426, 0.09828393135725429, 0.09828393135725429, 0.1310452418096724, 0.10920436817472699, 0.11856474258970359, 0.8065522620904836, 0.8393135725429017, 0.8689547581903276, 0.8892355694227769, 0.9282371294851794, 0.8783151326053042, 0.8549141965678627, 0.8377535101404057, 0.6006240249609984, 0.5475819032761311, 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\ No newline at end of file
diff --git a/pfam_gap_rates/N6-adenineMlase.gap.json b/pfam_gap_rates/N6-adenineMlase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f132dffd0217ce5cb035ac7196874fc6d0ad7435
--- /dev/null
+++ b/pfam_gap_rates/N6-adenineMlase.gap.json
@@ -0,0 +1 @@
+{"family": "N6-adenineMlase", "n_seqs": 355, "length": 213, "gap_rates": [0.3464788732394366, 0.22816901408450704, 0.13802816901408452, 0.11549295774647887, 0.10985915492957747, 0.10140845070422536, 0.10140845070422536, 0.10140845070422536, 0.09014084507042254, 0.08732394366197183, 0.08732394366197183, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08169014084507042, 0.08169014084507042, 0.08169014084507042, 0.08169014084507042, 0.08169014084507042, 0.08450704225352113, 0.14929577464788732, 0.10985915492957747, 0.11830985915492957, 0.11267605633802817, 0.8140845070422535, 0.9070422535211268, 0.9295774647887324, 0.9492957746478873, 0.9183098591549296, 0.8535211267605634, 0.4225352112676056, 0.17183098591549295, 0.22535211267605634, 0.10140845070422536, 0.07042253521126761, 0.07042253521126761, 0.0676056338028169, 0.0647887323943662, 0.0647887323943662, 0.0647887323943662, 0.0647887323943662, 0.0647887323943662, 0.059154929577464786, 0.059154929577464786, 0.061971830985915494, 0.061971830985915494, 0.061971830985915494, 0.0676056338028169, 0.0647887323943662, 0.0676056338028169, 0.07042253521126761, 0.07042253521126761, 0.07605633802816901, 0.5690140845070423, 0.6619718309859155, 0.8169014084507042, 0.9408450704225352, 0.9154929577464789, 0.7859154929577464, 0.6169014084507042, 0.4225352112676056, 0.2, 0.13802816901408452, 0.08169014084507042, 0.0676056338028169, 0.0647887323943662, 0.061971830985915494, 0.061971830985915494, 0.061971830985915494, 0.061971830985915494, 0.05070422535211268, 0.04788732394366197, 0.04507042253521127, 0.04225352112676056, 0.04225352112676056, 0.5661971830985916, 0.0647887323943662, 0.07323943661971831, 0.19718309859154928, 0.14084507042253522, 0.17464788732394365, 0.07605633802816901, 0.5605633802816902, 0.04507042253521127, 0.04225352112676056, 0.04788732394366197, 0.04788732394366197, 0.04788732394366197, 0.05070422535211268, 0.05070422535211268, 0.05070422535211268, 0.05070422535211268, 0.05352112676056338, 0.8816901408450705, 0.9352112676056338, 0.856338028169014, 0.05070422535211268, 0.17183098591549295, 0.07887323943661972, 0.7774647887323943, 0.8084507042253521, 0.8338028169014085, 0.9098591549295775, 0.9323943661971831, 0.8647887323943662, 0.8169014084507042, 0.7915492957746478, 0.7746478873239436, 0.08450704225352113, 0.09859154929577464, 0.061971830985915494, 0.8619718309859155, 0.9014084507042254, 0.7464788732394366, 0.056338028169014086, 0.05352112676056338, 0.05070422535211268, 0.05070422535211268, 0.05070422535211268, 0.05352112676056338, 0.05352112676056338, 0.05352112676056338, 0.05352112676056338, 0.05352112676056338, 0.05352112676056338, 0.05352112676056338, 0.056338028169014086, 0.7661971830985915, 0.7661971830985915, 0.05352112676056338, 0.07323943661971831, 0.07323943661971831, 0.07042253521126761, 0.0676056338028169, 0.07042253521126761, 0.07042253521126761, 0.07887323943661972, 0.09577464788732394, 0.09295774647887324, 0.09577464788732394, 0.10140845070422536, 0.09859154929577464, 0.10422535211267606, 0.10985915492957747, 0.11549295774647887, 0.14366197183098592, 0.14084507042253522, 0.3183098591549296, 0.49859154929577465, 0.7126760563380282, 0.7661971830985915, 0.8338028169014085, 0.8732394366197183, 0.9042253521126761, 0.8845070422535212, 0.856338028169014, 0.7859154929577464, 0.7352112676056338, 0.6676056338028169, 0.3436619718309859, 0.17746478873239438, 0.16619718309859155, 0.24788732394366197, 0.22253521126760564, 0.22253521126760564, 0.2140845070422535, 0.2140845070422535, 0.2676056338028169, 0.2563380281690141, 0.2140845070422535, 0.22253521126760564, 0.22253521126760564, 0.22816901408450704, 0.9211267605633803, 0.9408450704225352, 0.2619718309859155, 0.23661971830985915, 0.24788732394366197, 0.24788732394366197, 0.24788732394366197, 0.2507042253521127, 0.8056338028169014, 0.9323943661971831, 0.8309859154929577, 0.6873239436619718, 0.2563380281690141, 0.2563380281690141, 0.2563380281690141, 0.2563380281690141, 0.2563380281690141, 0.2591549295774648, 0.2563380281690141, 0.2591549295774648, 0.2591549295774648, 0.2591549295774648, 0.2647887323943662, 0.2647887323943662, 0.2647887323943662, 0.447887323943662, 0.30422535211267604, 0.30422535211267604, 0.30985915492957744, 0.30985915492957744, 0.3380281690140845, 0.3295774647887324, 0.3323943661971831, 0.3323943661971831, 0.3380281690140845, 0.3408450704225352, 0.36619718309859156, 0.4084507042253521, 0.8816901408450705], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NADH_dhqG_C.gap.json b/pfam_gap_rates/NADH_dhqG_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3f2c64dd2faf6115a308cdb3b4a36d8ca16abd2
--- /dev/null
+++ b/pfam_gap_rates/NADH_dhqG_C.gap.json
@@ -0,0 +1 @@
+{"family": "NADH_dhqG_C", "n_seqs": 452, "length": 57, "gap_rates": [0.9048672566371682, 0.6570796460176991, 0.6305309734513275, 0.6150442477876106, 0.6039823008849557, 0.6460176991150443, 0.6415929203539823, 0.834070796460177, 0.8407079646017699, 0.8296460176991151, 0.6216814159292036, 0.5309734513274337, 0.5066371681415929, 0.47123893805309736, 0.45353982300884954, 0.415929203539823, 0.38716814159292035, 0.3495575221238938, 0.32079646017699115, 0.2809734513274336, 0.2610619469026549, 0.22123893805309736, 0.4026548672566372, 0.4557522123893805, 0.09955752212389381, 0.07743362831858407, 0.06858407079646017, 0.04424778761061947, 0.0420353982300885, 0.03982300884955752, 0.035398230088495575, 0.033185840707964605, 0.015486725663716814, 0.8517699115044248, 0.8539823008849557, 0.8429203539823009, 0.00663716814159292, 0.00663716814159292, 0.0022123893805309734, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.00663716814159292, 0.00663716814159292, 0.033185840707964605, 0.1592920353982301], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NADH_u_ox_C.gap.json b/pfam_gap_rates/NADH_u_ox_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3da73a1fb6952484e13989fea5782d874b6d3e3
--- /dev/null
+++ b/pfam_gap_rates/NADH_u_ox_C.gap.json
@@ -0,0 +1 @@
+{"family": "NADH_u_ox_C", "n_seqs": 118, "length": 88, "gap_rates": [0.3813559322033898, 0.2627118644067797, 0.07627118644067797, 0.07627118644067797, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.025423728813559324, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.9152542372881356, 0.9067796610169492, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.03389830508474576, 0.11016949152542373, 0.15254237288135594, 0.17796610169491525, 0.19491525423728814, 0.2627118644067797, 0.2966101694915254, 0.3135593220338983, 0.3559322033898305, 0.3813559322033898, 0.4067796610169492, 0.4576271186440678, 0.576271186440678, 0.6016949152542372, 0.6610169491525424, 0.788135593220339, 0.8220338983050848, 0.847457627118644, 0.864406779661017, 0.864406779661017, 0.8898305084745762, 0.9152542372881356, 0.923728813559322, 0.940677966101695, 0.940677966101695, 0.9491525423728814], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NDK.gap.json b/pfam_gap_rates/NDK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a44fdddc7ff0c9b19fff096280e66938a6cb20d0
--- /dev/null
+++ b/pfam_gap_rates/NDK.gap.json
@@ -0,0 +1 @@
+{"family": "NDK", "n_seqs": 3204, "length": 149, "gap_rates": [0.25374531835205993, 0.1647940074906367, 0.12765293383270912, 0.11704119850187265, 0.11423220973782772, 0.09893882646691636, 0.09800249687890138, 0.09800249687890138, 0.0970661672908864, 0.09769038701622972, 0.09800249687890138, 0.09800249687890138, 0.13857677902621723, 0.1632334581772784, 0.11204744069912609, 0.09769038701622972, 0.09644194756554307, 0.08895131086142322, 0.08426966292134831, 0.08395755305867665, 0.08333333333333333, 0.08270911360799, 0.08302122347066167, 0.08146067415730338, 0.08083645443196005, 0.08052434456928839, 0.07865168539325842, 0.08239700374531835, 0.0780274656679151, 0.07709113607990012, 0.07615480649188515, 0.07521847690387017, 0.07553058676654183, 0.07428214731585518, 0.07459425717852684, 0.07272159800249688, 0.07272159800249688, 0.07397003745318352, 0.07303370786516854, 0.07428214731585518, 0.07428214731585518, 0.07397003745318352, 0.07365792759051186, 0.0733458177278402, 0.07303370786516854, 0.0733458177278402, 0.0733458177278402, 0.07397003745318352, 0.07584269662921349, 0.08707865168539326, 0.09675405742821473, 0.10268414481897628, 0.10923845193508115, 0.11204744069912609, 0.10830212234706617, 0.10455680399500625, 0.1017478152309613, 0.0970661672908864, 0.09082397003745318, 0.07833957553058676, 0.07272159800249688, 0.0702247191011236, 0.07053682896379526, 0.06679151061173533, 0.066167290886392, 0.06491885143570537, 0.06803995006242197, 0.06647940074906367, 0.06460674157303371, 0.06398252184769039, 0.06398252184769039, 0.060549313358302125, 0.06117353308364544, 0.0614856429463171, 0.06179775280898876, 0.06023720349563046, 0.949438202247191, 0.06023720349563046, 0.062109862671660424, 0.06398252184769039, 0.06304619225967541, 0.06273408239700375, 0.06304619225967541, 0.06335830212234707, 0.06398252184769039, 0.06398252184769039, 0.06335830212234707, 0.06679151061173533, 0.0702247191011236, 0.07116104868913857, 0.07365792759051186, 0.07428214731585518, 0.07677902621722846, 0.07927590511860175, 0.07990012484394507, 0.08052434456928839, 0.8233458177278402, 0.8252184769038702, 0.8049313358302123, 0.07927590511860175, 0.07896379525593009, 0.08021223470661673, 0.07990012484394507, 0.07958801498127341, 0.08052434456928839, 0.08021223470661673, 0.08083645443196005, 0.08052434456928839, 0.08083645443196005, 0.08114856429463171, 0.08333333333333333, 0.08583021223470662, 0.9044943820224719, 0.9063670411985019, 0.9335205992509363, 0.9419475655430711, 0.9425717852684145, 0.9419475655430711, 0.934769038701623, 0.9325842696629213, 0.9057428214731585, 0.9038701622971286, 0.08707865168539326, 0.0883270911360799, 0.08895131086142322, 0.08926342072409488, 0.08957553058676654, 0.08957553058676654, 0.08957553058676654, 0.09019975031210986, 0.09019975031210986, 0.09519350811485643, 0.09363295880149813, 0.0945692883895131, 0.09425717852684144, 0.09550561797752809, 0.09644194756554307, 0.09737827715355805, 0.09800249687890138, 0.09925093632958802, 0.10143570536828964, 0.10299625468164794, 0.10799001248439451, 0.11891385767790262, 0.14450686641697877, 0.24812734082397003, 0.46441947565543074, 0.532147315855181, 0.7983770287141073], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NDUF_B12.gap.json b/pfam_gap_rates/NDUF_B12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1d5e69b24a63efc5ca37649cb6cf01bd7c0edd0
--- /dev/null
+++ b/pfam_gap_rates/NDUF_B12.gap.json
@@ -0,0 +1 @@
+{"family": "NDUF_B12", "n_seqs": 212, "length": 63, "gap_rates": [0.44339622641509435, 0.2028301886792453, 0.2028301886792453, 0.1792452830188679, 0.16981132075471697, 0.05660377358490566, 0.03773584905660377, 0.0330188679245283, 0.02358490566037736, 0.018867924528301886, 0.014150943396226415, 0.014150943396226415, 0.8773584905660378, 0.8207547169811321, 0.009433962264150943, 0.9481132075471698, 0.02830188679245283, 0.02830188679245283, 0.014150943396226415, 0.018867924528301886, 0.06132075471698113, 0.10849056603773585, 0.07547169811320754, 0.03773584905660377, 0.02358490566037736, 0.009433962264150943, 0.0047169811320754715, 0.018867924528301886, 0.018867924528301886, 0.6698113207547169, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009433962264150943, 0.009433962264150943, 0.014150943396226415, 0.014150943396226415, 0.009433962264150943, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.07075471698113207, 0.910377358490566, 0.9481132075471698, 0.910377358490566, 0.9009433962264151, 0.09905660377358491, 0.14622641509433962, 0.17452830188679244, 0.19811320754716982, 0.23113207547169812, 0.2688679245283019, 0.33490566037735847, 0.46226415094339623, 0.7641509433962265], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NICE-3.gap.json b/pfam_gap_rates/NICE-3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a53c8a6be660cdb720862961e5eef8bb4b31e95
--- /dev/null
+++ b/pfam_gap_rates/NICE-3.gap.json
@@ -0,0 +1 @@
+{"family": "NICE-3", "n_seqs": 105, "length": 195, "gap_rates": [0.8285714285714286, 0.6476190476190476, 0.5238095238095238, 0.49523809523809526, 0.4857142857142857, 0.4666666666666667, 0.44761904761904764, 0.42857142857142855, 0.38095238095238093, 0.3238095238095238, 0.3047619047619048, 0.3047619047619048, 0.3047619047619048, 0.3047619047619048, 0.3047619047619048, 0.3047619047619048, 0.29523809523809524, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.2761904761904762, 0.2571428571428571, 0.2571428571428571, 0.2571428571428571, 0.24761904761904763, 0.24761904761904763, 0.24761904761904763, 0.24761904761904763, 0.2571428571428571, 0.24761904761904763, 0.24761904761904763, 0.8571428571428571, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.24761904761904763, 0.2761904761904762, 0.26666666666666666, 0.24761904761904763, 0.24761904761904763, 0.22857142857142856, 0.22857142857142856, 0.22857142857142856, 0.22857142857142856, 0.20952380952380953, 0.2, 0.2, 0.2, 0.2, 0.19047619047619047, 0.19047619047619047, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.9428571428571428, 0.9333333333333333, 0.29523809523809524, 0.29523809523809524, 0.29523809523809524, 0.2857142857142857, 0.21904761904761905, 0.2571428571428571, 0.23809523809523808, 0.4, 0.3619047619047619, 0.9142857142857143, 0.9428571428571428, 0.9428571428571428, 0.8285714285714286, 0.2571428571428571, 0.2857142857142857, 0.3142857142857143, 0.41904761904761906, 0.38095238095238093, 0.3523809523809524, 0.29523809523809524, 0.3047619047619048, 0.3047619047619048, 0.3523809523809524, 0.5619047619047619, 0.5523809523809524, 0.49523809523809526, 0.41904761904761906, 0.2857142857142857, 0.2761904761904762, 0.24761904761904763, 0.24761904761904763, 0.24761904761904763, 0.24761904761904763, 0.23809523809523808, 0.21904761904761905, 0.21904761904761905, 0.21904761904761905, 0.21904761904761905, 0.21904761904761905, 0.21904761904761905, 0.20952380952380953, 0.2, 0.4095238095238095, 0.4095238095238095, 0.9238095238095239, 0.20952380952380953, 0.18095238095238095, 0.17142857142857143, 0.17142857142857143, 0.1619047619047619, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.41904761904761906, 0.3523809523809524, 0.1523809523809524, 0.14285714285714285, 0.12380952380952381, 0.12380952380952381, 0.12380952380952381, 0.7904761904761904, 0.8, 0.8, 0.780952380952381, 0.11428571428571428, 0.12380952380952381, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.7238095238095238, 0.6190476190476191, 0.22857142857142856, 0.12380952380952381, 0.12380952380952381, 0.12380952380952381, 0.10476190476190476, 0.09523809523809523, 0.09523809523809523, 0.11428571428571428, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.11428571428571428, 0.12380952380952381, 0.1523809523809524, 0.19047619047619047, 0.34285714285714286, 0.8380952380952381], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NIF3.gap.json b/pfam_gap_rates/NIF3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19849ae43c6cc2c91609a8b720ce02e5952a7411
--- /dev/null
+++ b/pfam_gap_rates/NIF3.gap.json
@@ -0,0 +1 @@
+{"family": "NIF3", "n_seqs": 1831, "length": 366, "gap_rates": [0.5608956854178044, 0.2501365374112507, 0.19989077007099945, 0.1665756417258329, 0.14964500273074824, 0.13435281267067176, 0.12889131622064445, 0.12561441835062806, 0.12397596941561988, 0.12015292190060077, 0.1190606226105953, 0.11687602403058438, 0.11632987438558165, 0.11469142545057345, 0.10977607864554888, 0.10759148006553795, 0.9186237028945932, 0.10431458219552157, 0.1032222829055161, 0.099399235390497, 0.0922992900054615, 0.08301474604041507, 0.0868377935554342, 0.07591480065537957, 0.06608410704533042, 0.0638995084653195, 0.08956854178044785, 0.9464773347897324, 0.8967777170944838, 0.2364827962861824, 0.06444565811032223, 0.06280720917531403, 0.05188421627525942, 0.9399235390496996, 0.05079191698525396, 0.0496996176952485, 0.0496996176952485, 0.0496996176952485, 0.0496996176952485, 0.0480611687602403, 0.0480611687602403, 0.0480611687602403, 0.047515019115237575, 0.04696886947023485, 0.04696886947023485, 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\ No newline at end of file
diff --git a/pfam_gap_rates/NOC3p.gap.json b/pfam_gap_rates/NOC3p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ccfe367915291ff2e19f63ddec52ab535954fed
--- /dev/null
+++ b/pfam_gap_rates/NOC3p.gap.json
@@ -0,0 +1 @@
+{"family": "NOC3p", "n_seqs": 309, "length": 112, "gap_rates": [0.9288025889967637, 0.19741100323624594, 0.12297734627831715, 0.08090614886731391, 0.07119741100323625, 0.05177993527508091, 0.045307443365695796, 0.045307443365695796, 0.045307443365695796, 0.045307443365695796, 0.045307443365695796, 0.045307443365695796, 0.045307443365695796, 0.045307443365695796, 0.045307443365695796, 0.042071197411003236, 0.042071197411003236, 0.042071197411003236, 0.038834951456310676, 0.032362459546925564, 0.032362459546925564, 0.032362459546925564, 0.019417475728155338, 0.012944983818770227, 0.012944983818770227, 0.016181229773462782, 0.016181229773462782, 0.016181229773462782, 0.019417475728155338, 0.9288025889967637, 0.016181229773462782, 0.012944983818770227, 0.016181229773462782, 0.019417475728155338, 0.022653721682847898, 0.019417475728155338, 0.5631067961165048, 0.5825242718446602, 0.7637540453074434, 0.8446601941747572, 0.8543689320388349, 0.8640776699029126, 0.9352750809061489, 0.948220064724919, 0.9385113268608414, 0.9255663430420712, 0.8640776699029126, 0.8478964401294499, 0.8187702265372169, 0.7411003236245954, 0.5760517799352751, 0.5275080906148867, 0.025889967637540454, 0.022653721682847898, 0.022653721682847898, 0.019417475728155338, 0.016181229773462782, 0.012944983818770227, 0.012944983818770227, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.006472491909385114, 0.006472491909385114, 0.009708737864077669, 0.012944983818770227, 0.016181229773462782, 0.019417475728155338, 0.019417475728155338, 0.02912621359223301, 0.05825242718446602, 0.061488673139158574, 0.07766990291262135, 0.9352750809061489, 0.941747572815534, 0.9320388349514563, 0.08414239482200647, 0.05501618122977346, 0.038834951456310676, 0.032362459546925564, 0.032362459546925564, 0.02912621359223301, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.025889967637540454, 0.02912621359223301, 0.02912621359223301, 0.03559870550161812, 0.05825242718446602, 0.08737864077669903], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NPP1.gap.json b/pfam_gap_rates/NPP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63259d6120e5f179c1163a0a1790736946af3c66
--- /dev/null
+++ b/pfam_gap_rates/NPP1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NPR3.gap.json b/pfam_gap_rates/NPR3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71415d1c3b0ff21445d0d7b494cf4a54eefd85fe
--- /dev/null
+++ b/pfam_gap_rates/NPR3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NUC173.gap.json b/pfam_gap_rates/NUC173.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d67f702680c0d6d2b3f16c92edbc1c0f2e7b70f
--- /dev/null
+++ b/pfam_gap_rates/NUC173.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NYD-SP28.gap.json b/pfam_gap_rates/NYD-SP28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7e7ca4e0885203c58e50e5087e582b75a0aee4d
--- /dev/null
+++ b/pfam_gap_rates/NYD-SP28.gap.json
@@ -0,0 +1 @@
+{"family": "NYD-SP28", "n_seqs": 212, "length": 101, "gap_rates": [0.7924528301886793, 0.5047169811320755, 0.4481132075471698, 0.2830188679245283, 0.22169811320754718, 0.21226415094339623, 0.19339622641509435, 0.1792452830188679, 0.1650943396226415, 0.15566037735849056, 0.14622641509433962, 0.1320754716981132, 0.1320754716981132, 0.13679245283018868, 0.12735849056603774, 0.10377358490566038, 0.09905660377358491, 0.09433962264150944, 0.08962264150943396, 0.08018867924528301, 0.07075471698113207, 0.06132075471698113, 0.05660377358490566, 0.0660377358490566, 0.06132075471698113, 0.04716981132075472, 0.04245283018867924, 0.04245283018867924, 0.04245283018867924, 0.04245283018867924, 0.03773584905660377, 0.02830188679245283, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.014150943396226415, 0.014150943396226415, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.014150943396226415, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.018867924528301886, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02830188679245283, 0.02830188679245283, 0.0330188679245283, 0.03773584905660377, 0.0330188679245283, 0.0330188679245283, 0.04245283018867924, 0.04245283018867924, 0.04245283018867924, 0.05188679245283019, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.07075471698113207, 0.07075471698113207, 0.07547169811320754, 0.08490566037735849, 0.09905660377358491, 0.12264150943396226, 0.2169811320754717, 0.29245283018867924, 0.46226415094339623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nexin_C.gap.json b/pfam_gap_rates/Nexin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83ca5b7ddc686319fe870fb25ff3cba8a6cca48a
--- /dev/null
+++ b/pfam_gap_rates/Nexin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Nexin_C", "n_seqs": 480, "length": 158, "gap_rates": [0.19166666666666668, 0.85, 0.15208333333333332, 0.13125, 0.12291666666666666, 0.15625, 0.11666666666666667, 0.12291666666666666, 0.46458333333333335, 0.46458333333333335, 0.42291666666666666, 0.13958333333333334, 0.04791666666666667, 0.04583333333333333, 0.04375, 0.05, 0.03958333333333333, 0.035416666666666666, 0.035416666666666666, 0.029166666666666667, 0.8625, 0.8645833333333334, 0.8479166666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.025, 0.022916666666666665, 0.022916666666666665, 0.022916666666666665, 0.022916666666666665, 0.025, 0.022916666666666665, 0.022916666666666665, 0.01875, 0.8354166666666667, 0.01875, 0.016666666666666666, 0.022916666666666665, 0.016666666666666666, 0.014583333333333334, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.0125, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.008333333333333333, 0.9354166666666667, 0.9395833333333333, 0.9416666666666667, 0.94375, 0.94375, 0.94375, 0.9395833333333333, 0.9375, 0.9354166666666667, 0.00625, 0.00625, 0.004166666666666667, 0.004166666666666667, 0.00625, 0.16041666666666668, 0.21875, 0.76875, 0.8041666666666667, 0.8291666666666667, 0.8416666666666667, 0.8604166666666667, 0.8645833333333334, 0.8708333333333333, 0.8729166666666667, 0.8791666666666667, 0.8895833333333333, 0.8958333333333334, 0.9020833333333333, 0.9083333333333333, 0.9354166666666667, 0.94375, 0.9229166666666667, 0.9041666666666667, 0.8979166666666667, 0.8958333333333334, 0.8895833333333333, 0.8729166666666667, 0.8729166666666667, 0.86875, 0.8604166666666667, 0.8479166666666667, 0.8333333333333334, 0.8229166666666666, 0.7791666666666667, 0.6416666666666667, 0.17291666666666666, 0.15625, 0.14375, 0.11875, 0.09791666666666667, 0.10208333333333333, 0.03125, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.014583333333333334, 0.008333333333333333, 0.8666666666666667, 0.9291666666666667, 0.8541666666666666, 0.00625, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.7333333333333333, 0.0020833333333333333, 0.0020833333333333333, 0.004166666666666667, 0.016666666666666666, 0.022916666666666665, 0.027083333333333334, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.0375, 0.0375, 0.041666666666666664, 0.03958333333333333, 0.0375, 0.03958333333333333, 0.03958333333333333, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.04791666666666667, 0.058333333333333334, 0.06041666666666667, 0.0625, 0.11875, 0.8375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NifU.gap.json b/pfam_gap_rates/NifU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f235964dc2e346a5dea93e324ae493482e03fc5
--- /dev/null
+++ b/pfam_gap_rates/NifU.gap.json
@@ -0,0 +1 @@
+{"family": "NifU", "n_seqs": 2064, "length": 69, "gap_rates": [0.14680232558139536, 0.08478682170542635, 0.05184108527131783, 0.04215116279069767, 0.037306201550387594, 0.035368217054263566, 0.03391472868217054, 0.4806201550387597, 0.031492248062015504, 0.031007751937984496, 0.020348837209302327, 0.017926356589147287, 0.016472868217054265, 0.013565891472868217, 0.007267441860465116, 0.006298449612403101, 0.006298449612403101, 0.006782945736434108, 0.006298449612403101, 0.006298449612403101, 0.007267441860465116, 0.006782945736434108, 0.006782945736434108, 0.005813953488372093, 0.006782945736434108, 0.005329457364341085, 0.006298449612403101, 0.007267441860465116, 0.8212209302325582, 0.6288759689922481, 0.007751937984496124, 0.007751937984496124, 0.006782945736434108, 0.006298449612403101, 0.006782945736434108, 0.006298449612403101, 0.0048449612403100775, 0.0048449612403100775, 0.005813953488372093, 0.015019379844961241, 0.022286821705426358, 0.02180232558139535, 0.023255813953488372, 0.0499031007751938, 0.04408914728682171, 0.04263565891472868, 0.04263565891472868, 0.009205426356589148, 0.009205426356589148, 0.009205426356589148, 0.056686046511627904, 0.011143410852713179, 0.009689922480620155, 0.009689922480620155, 0.009205426356589148, 0.010174418604651164, 0.01065891472868217, 0.01065891472868217, 0.011143410852713179, 0.012596899224806201, 0.01695736434108527, 0.017926356589147287, 0.020833333333333332, 0.03391472868217054, 0.061046511627906974, 0.0876937984496124, 0.11627906976744186, 0.1371124031007752, 0.4583333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nitr_red_alph_N.gap.json b/pfam_gap_rates/Nitr_red_alph_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed2dad246b06dd6aa017aaca3688d1c88c7268f2
--- /dev/null
+++ b/pfam_gap_rates/Nitr_red_alph_N.gap.json
@@ -0,0 +1 @@
+{"family": "Nitr_red_alph_N", "n_seqs": 143, "length": 39, "gap_rates": [0.35664335664335667, 0.15384615384615385, 0.14685314685314685, 0.11188811188811189, 0.1048951048951049, 0.02097902097902098, 0.02097902097902098, 0.0, 0.0, 0.0, 0.0, 0.0, 0.22377622377622378, 0.9090909090909091, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.027972027972027972], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nitrate_red_del.gap.json b/pfam_gap_rates/Nitrate_red_del.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b09be120c39470e9d0293909797717aa10b4f624
--- /dev/null
+++ b/pfam_gap_rates/Nitrate_red_del.gap.json
@@ -0,0 +1 @@
+{"family": "Nitrate_red_del", "n_seqs": 858, "length": 152, "gap_rates": [0.8939393939393939, 0.8088578088578089, 0.7272727272727273, 0.6480186480186481, 0.5804195804195804, 0.5151515151515151, 0.47785547785547783, 0.4324009324009324, 0.46736596736596736, 0.4230769230769231, 0.3939393939393939, 0.3473193473193473, 0.2634032634032634, 0.2494172494172494, 0.22727272727272727, 0.22377622377622378, 0.18764568764568765, 0.8426573426573427, 0.9114219114219114, 0.9440559440559441, 0.9335664335664335, 0.8752913752913752, 0.8135198135198135, 0.7237762237762237, 0.5885780885780886, 0.8916083916083916, 0.6888111888111889, 0.11421911421911422, 0.09207459207459208, 0.08158508158508158, 0.06643356643356643, 0.05827505827505827, 0.05011655011655012, 0.045454545454545456, 0.04312354312354312, 0.04079254079254079, 0.037296037296037296, 0.03613053613053613, 0.03613053613053613, 0.03613053613053613, 0.0337995337995338, 0.03263403263403263, 0.029137529137529136, 0.029137529137529136, 0.351981351981352, 0.38927738927738925, 0.8974358974358975, 0.07109557109557109, 0.047785547785547784, 0.023310023310023312, 0.018648018648018648, 0.019813519813519812, 0.019813519813519812, 0.017482517482517484, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.015151515151515152, 0.01282051282051282, 0.01282051282051282, 0.013986013986013986, 0.9498834498834499, 0.9487179487179487, 0.41025641025641024, 0.4219114219114219, 0.4114219114219114, 0.5710955710955711, 0.05710955710955711, 0.05128205128205128, 0.039627039627039624, 0.029137529137529136, 0.024475524475524476, 0.019813519813519812, 0.016317016317016316, 0.8986013986013986, 0.8916083916083916, 0.008158508158508158, 0.004662004662004662, 0.0034965034965034965, 0.0034965034965034965, 0.0034965034965034965, 0.0034965034965034965, 0.002331002331002331, 0.002331002331002331, 0.002331002331002331, 0.002331002331002331, 0.002331002331002331, 0.002331002331002331, 0.005827505827505828, 0.7144522144522144, 0.013986013986013986, 0.017482517482517484, 0.017482517482517484, 0.006993006993006993, 0.047785547785547784, 0.39044289044289043, 0.32634032634032634, 0.24125874125874125, 0.0011655011655011655, 0.0011655011655011655, 0.0011655011655011655, 0.0011655011655011655, 0.0011655011655011655, 0.0011655011655011655, 0.0011655011655011655, 0.0011655011655011655, 0.0011655011655011655, 0.002331002331002331, 0.002331002331002331, 0.002331002331002331, 0.047785547785547784, 0.04312354312354312, 0.046620046620046623, 0.05710955710955711, 0.0641025641025641, 0.06643356643356643, 0.07109557109557109, 0.14918414918414918, 0.4347319347319347, 0.5477855477855478, 0.5652680652680653, 0.5244755244755245, 0.7214452214452215, 0.7855477855477856, 0.6445221445221445, 0.4568764568764569, 0.4160839160839161, 0.37995337995337997, 0.337995337995338, 0.30303030303030304, 0.2937062937062937, 0.25990675990675993, 0.15268065268065267, 0.1445221445221445, 0.1445221445221445, 0.14335664335664336, 0.14801864801864803, 0.15734265734265734, 0.15734265734265734, 0.16433566433566432, 0.17249417249417248, 0.18298368298368298, 0.19230769230769232, 0.23076923076923078, 0.21445221445221446, 0.22377622377622378, 0.2517482517482518, 0.2902097902097902, 0.3543123543123543, 0.4149184149184149, 0.541958041958042, 0.9009324009324009], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nop10p.gap.json b/pfam_gap_rates/Nop10p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90b97919d85f425606f44e1709e06f355a136b58
--- /dev/null
+++ b/pfam_gap_rates/Nop10p.gap.json
@@ -0,0 +1 @@
+{"family": "Nop10p", "n_seqs": 343, "length": 52, "gap_rates": [0.1836734693877551, 0.13702623906705538, 0.11370262390670553, 0.09329446064139942, 0.08454810495626822, 0.08746355685131195, 0.0641399416909621, 0.04081632653061224, 0.04081632653061224, 0.03206997084548105, 0.7842565597667639, 0.029154518950437316, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.023323615160349854, 0.014577259475218658, 0.011661807580174927, 0.011661807580174927, 0.011661807580174927, 0.011661807580174927, 0.17784256559766765, 0.793002915451895, 0.03206997084548105, 0.026239067055393587, 0.023323615160349854, 0.02040816326530612, 0.01749271137026239, 0.0058309037900874635, 0.0, 0.0, 0.0, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.011661807580174927, 0.011661807580174927, 0.011661807580174927, 0.011661807580174927, 0.011661807580174927, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.01749271137026239, 0.01749271137026239, 0.01749271137026239, 0.01749271137026239, 0.026239067055393587, 0.03498542274052478, 0.07580174927113703, 0.119533527696793, 0.2303206997084548], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NosD.gap.json b/pfam_gap_rates/NosD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fb2b76ee4854fb58bbb2b4f1cc110ad70df1fdc
--- /dev/null
+++ b/pfam_gap_rates/NosD.gap.json
@@ -0,0 +1 @@
+{"family": "NosD", "n_seqs": 753, "length": 293, "gap_rates": [0.9110225763612217, 0.8618857901726428, 0.8459495351925631, 0.8300132802124834, 0.8167330677290837, 0.8074369189907038, 0.8021248339973439, 0.798140770252324, 0.7928286852589641, 0.7808764940239044, 0.7609561752988048, 0.7330677290836654, 0.7118193891102258, 0.8618857901726428, 0.6560424966799469, 0.6294820717131474, 0.5803452855245684, 0.5551128818061088, 0.547144754316069, 0.5378486055776892, 0.5298804780876494, 0.5272244355909694, 0.5219123505976095, 0.5033200531208499, 0.47277556440903057, 0.4581673306772908, 0.448871181938911, 0.43824701195219123, 0.4050464807436919, 0.38645418326693226, 0.36786188579017265, 0.36254980079681276, 0.351925630810093, 0.34794156706507307, 0.33731739707835323, 0.3280212483399734, 0.31341301460823373, 0.300132802124834, 0.2961487383798141, 0.2855245683930943, 0.28021248339973437, 0.8791500664010624, 0.34926958831341304, 0.25763612217795484, 0.24701195219123506, 0.22841965471447542, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Nucleic_acid_bd.gap.json b/pfam_gap_rates/Nucleic_acid_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08a4df191f115aa80ed3f8906fdce2e2f00d9c76
--- /dev/null
+++ b/pfam_gap_rates/Nucleic_acid_bd.gap.json
@@ -0,0 +1 @@
+{"family": "Nucleic_acid_bd", "n_seqs": 115, "length": 153, "gap_rates": [0.26956521739130435, 0.13043478260869565, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.12173913043478261, 0.12173913043478261, 0.6956521739130435, 0.6956521739130435, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.0782608695652174, 0.0782608695652174, 0.9130434782608695, 0.12173913043478261, 0.11304347826086956, 0.09565217391304348, 0.0782608695652174, 0.0782608695652174, 0.06956521739130435, 0.06086956521739131, 0.06086956521739131, 0.05217391304347826, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.05217391304347826, 0.05217391304347826, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.02608695652173913, 0.02608695652173913, 0.034782608695652174, 0.034782608695652174, 0.043478260869565216, 0.05217391304347826, 0.2, 0.2, 0.2, 0.3739130434782609, 0.3826086956521739, 0.4, 0.3826086956521739, 0.3652173913043478, 0.11304347826086956, 0.12173913043478261, 0.10434782608695652, 0.09565217391304348, 0.08695652173913043, 0.08695652173913043, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.11304347826086956, 0.808695652173913, 0.14782608695652175, 0.14782608695652175, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1565217391304348, 0.1565217391304348, 0.1565217391304348, 0.16521739130434782, 0.16521739130434782, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.16521739130434782, 0.17391304347826086, 0.16521739130434782, 0.16521739130434782, 0.16521739130434782, 0.16521739130434782, 0.16521739130434782, 0.17391304347826086, 0.19130434782608696, 0.24347826086956523, 0.23478260869565218, 0.23478260869565218, 0.23478260869565218, 0.22608695652173913, 0.22608695652173913, 0.22608695652173913, 0.24347826086956523, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.2608695652173913, 0.2608695652173913, 0.2608695652173913, 0.2782608695652174, 0.2956521739130435, 0.3652173913043478], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nucleopor_Nup85.gap.json b/pfam_gap_rates/Nucleopor_Nup85.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1a97eb40dac632419ddefbc78b2a122d0ed1603
--- /dev/null
+++ b/pfam_gap_rates/Nucleopor_Nup85.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nucleoporin_N.gap.json b/pfam_gap_rates/Nucleoporin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2eb66d12ed731ad0c5d0e0a2827972325b148d15
--- /dev/null
+++ b/pfam_gap_rates/Nucleoporin_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OEP.gap.json b/pfam_gap_rates/OEP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8734b156a5c602ca826859dd7114df4617c92185
--- /dev/null
+++ b/pfam_gap_rates/OEP.gap.json
@@ -0,0 +1 @@
+{"family": "OEP", "n_seqs": 5000, "length": 218, "gap_rates": [0.6828, 0.5194, 0.425, 0.3558, 0.3126, 0.267, 0.2242, 0.187, 0.1544, 0.1318, 0.116, 0.093, 0.0848, 0.0808, 0.0732, 0.0696, 0.0696, 0.0658, 0.0656, 0.0618, 0.0584, 0.0572, 0.056, 0.0546, 0.0538, 0.9296, 0.06, 0.0556, 0.0526, 0.0522, 0.0516, 0.0508, 0.0496, 0.0488, 0.058, 0.0696, 0.1314, 0.053, 0.0454, 0.0448, 0.0436, 0.043, 0.0414, 0.0414, 0.0414, 0.0424, 0.0416, 0.0408, 0.0404, 0.043, 0.041, 0.0396, 0.0402, 0.0478, 0.0576, 0.0718, 0.0722, 0.119, 0.1522, 0.1832, 0.193, 0.2406, 0.2982, 0.3292, 0.418, 0.4812, 0.5998, 0.6966, 0.7656, 0.8084, 0.8444, 0.8642, 0.8834, 0.9026, 0.9152, 0.9308, 0.9386, 0.9432, 0.946, 0.9494, 0.9486, 0.945, 0.9398, 0.935, 0.923, 0.9094, 0.8944, 0.8718, 0.8558, 0.8292, 0.7868, 0.7376, 0.6516, 0.5494, 0.3704, 0.035, 0.0338, 0.0324, 0.0326, 0.0318, 0.0314, 0.031, 0.0308, 0.0314, 0.034, 0.0768, 0.1956, 0.0414, 0.0386, 0.0286, 0.0248, 0.0238, 0.0232, 0.0226, 0.0196, 0.0194, 0.0186, 0.0174, 0.0152, 0.014, 0.014, 0.013, 0.0114, 0.0114, 0.0102, 0.0094, 0.0092, 0.009, 0.009, 0.0084, 0.0086, 0.0086, 0.0086, 0.0086, 0.0086, 0.0086, 0.0084, 0.0082, 0.0082, 0.008, 0.0088, 0.0092, 0.009, 0.0086, 0.0084, 0.0082, 0.0084, 0.008, 0.0084, 0.0078, 0.0076, 0.008, 0.0082, 0.9366, 0.009, 0.009, 0.0086, 0.0092, 0.0092, 0.0088, 0.0098, 0.0098, 0.0122, 0.011, 0.0108, 0.0108, 0.0112, 0.011, 0.0106, 0.0104, 0.0108, 0.0114, 0.0118, 0.0122, 0.0124, 0.0128, 0.0136, 0.0144, 0.0148, 0.0152, 0.0156, 0.0162, 0.0612, 0.022, 0.0198, 0.0194, 0.0182, 0.0186, 0.0196, 0.0196, 0.0224, 0.0208, 0.021, 0.0222, 0.0226, 0.0236, 0.0252, 0.0268, 0.0286, 0.0314, 0.0332, 0.0348, 0.0404, 0.0426, 0.0448, 0.0514, 0.0586, 0.0664, 0.0744, 0.087, 0.0978, 0.1058, 0.1142, 0.1356, 0.1668, 0.2052, 0.2634, 0.3918], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OKR_DC_1_C.gap.json b/pfam_gap_rates/OKR_DC_1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9638b5c8d7f75beb0700030ae9653bba2db1b8ad
--- /dev/null
+++ b/pfam_gap_rates/OKR_DC_1_C.gap.json
@@ -0,0 +1 @@
+{"family": "OKR_DC_1_C", "n_seqs": 1132, "length": 133, "gap_rates": [0.773851590106007, 0.7676678445229682, 0.7667844522968198, 0.7659010600706714, 0.765017667844523, 0.765017667844523, 0.765017667844523, 0.765017667844523, 0.7641342756183745, 0.8630742049469965, 0.7623674911660777, 0.7606007067137809, 0.7606007067137809, 0.758833922261484, 0.7535335689045937, 0.7402826855123675, 0.7093639575971732, 0.7031802120141343, 0.696113074204947, 0.6881625441696113, 0.6855123674911661, 0.6749116607773852, 0.666077738515901, 0.6607773851590106, 0.6537102473498233, 0.6519434628975265, 0.6448763250883393, 0.6395759717314488, 0.6360424028268551, 0.6342756183745583, 0.6280918727915195, 0.6201413427561837, 0.6148409893992933, 0.607773851590106, 0.6042402826855123, 0.6015901060070671, 0.592756183745583, 0.5777385159010601, 0.5591872791519434, 0.5503533568904594, 0.5406360424028268, 0.5415194346289752, 0.5159010600706714, 0.8498233215547704, 0.8109540636042403, 0.4204946996466431, 0.3869257950530035, 0.3710247349823322, 0.35954063604240283, 0.3462897526501767, 0.3365724381625442, 0.32773851590106007, 0.31890459363957596, 0.303886925795053, 0.303886925795053, 0.2915194346289753, 0.2941696113074205, 0.303886925795053, 0.4249116607773852, 0.5123674911660777, 0.4929328621908127, 0.43992932862190814, 0.26501766784452296, 0.13957597173144876, 0.1068904593639576, 0.0706713780918728, 0.04946996466431095, 0.045053003533568906, 0.037102473498233215, 0.03268551236749117, 0.028268551236749116, 0.022084805653710248, 0.020318021201413426, 0.015017667844522967, 0.012367491166077738, 0.007067137809187279, 0.00441696113074205, 0.00441696113074205, 0.00441696113074205, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.00265017667844523, 0.00265017667844523, 0.0017667844522968198, 0.0017667844522968198, 0.0017667844522968198, 0.0017667844522968198, 0.0017667844522968198, 0.0017667844522968198, 0.00441696113074205, 0.00441696113074205, 0.00441696113074205, 0.00441696113074205, 0.00441696113074205, 0.00441696113074205, 0.00530035335689046, 0.734982332155477, 0.7438162544169611, 0.7544169611307421, 0.06537102473498234, 0.08303886925795052, 0.08568904593639576, 0.08392226148409894, 0.0892226148409894, 0.10865724381625441, 0.12809187279151943, 0.1519434628975265, 0.19699646643109542, 0.26060070671378094, 0.2968197879858657, 0.33568904593639576, 0.37014134275618377, 0.4284452296819788, 0.46996466431095407, 0.4991166077738516, 0.5185512367491166, 0.5415194346289752, 0.573321554770318, 0.5901060070671378, 0.6881625441696113, 0.7058303886925795, 0.7243816254416962, 0.7385159010600707, 0.7464664310954063, 0.7482332155477032, 0.75, 0.7553003533568905, 0.7570671378091873, 0.7712014134275619, 0.8171378091872792, 0.9107773851590106], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OMPdecase.gap.json b/pfam_gap_rates/OMPdecase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0e65d878fbfa2f821bae4bf5c751955f85053b0
--- /dev/null
+++ b/pfam_gap_rates/OMPdecase.gap.json
@@ -0,0 +1 @@
+{"family": "OMPdecase", "n_seqs": 2618, "length": 279, "gap_rates": [0.8059587471352178, 0.3372803666921314, 0.16883116883116883, 0.11802902979373568, 0.1134453781512605, 0.11115355233002291, 0.11038961038961038, 0.11000763941940413, 0.10886172650878534, 0.10847975553857907, 0.11077158135981666, 0.10809778456837281, 0.7452253628724217, 0.7478991596638656, 0.7513368983957219, 0.7563025210084033, 0.7635599694423224, 0.7692895339954163, 0.8197097020626433, 0.9499618029029794, 0.9163483575248281, 0.771581359816654, 0.7654698242933538, 0.7578304048892284, 0.7555385790679908, 0.7498090145148969, 0.745607333842628, 0.7410236822001528, 0.11611917494270435, 0.10886172650878534, 0.10618792971734148, 0.09434682964094729, 0.061115355233002294, 0.04048892284186402, 0.03666921313980138, 0.03628724216959511, 0.03552330022918258, 0.03552330022918258, 0.03590527119938885, 0.03896103896103896, 0.8601986249045073, 0.06417112299465241, 0.033995416348357524, 0.033995416348357524, 0.03170359052711994, 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\ No newline at end of file
diff --git a/pfam_gap_rates/OPA3.gap.json b/pfam_gap_rates/OPA3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6d29be1eca6836f9e7b1a7635b41f64096c7b4f
--- /dev/null
+++ b/pfam_gap_rates/OPA3.gap.json
@@ -0,0 +1 @@
+{"family": "OPA3", "n_seqs": 354, "length": 191, "gap_rates": [0.4604519774011299, 0.2966101694915254, 0.17231638418079095, 0.15819209039548024, 0.14689265536723164, 0.1327683615819209, 0.1327683615819209, 0.1327683615819209, 0.11581920903954802, 0.11299435028248588, 0.11299435028248588, 0.11016949152542373, 0.11016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.09887005649717515, 0.09887005649717515, 0.09322033898305085, 0.09322033898305085, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0847457627118644, 0.0847457627118644, 0.08757062146892655, 0.08757062146892655, 0.692090395480226, 0.0847457627118644, 0.07909604519774012, 0.07909604519774012, 0.0847457627118644, 0.0847457627118644, 0.08192090395480225, 0.08192090395480225, 0.07062146892655367, 0.062146892655367235, 0.06497175141242938, 0.06497175141242938, 0.06779661016949153, 0.06497175141242938, 0.06497175141242938, 0.05367231638418079, 0.04519774011299435, 0.03389830508474576, 0.05367231638418079, 0.03954802259887006, 0.03672316384180791, 0.03672316384180791, 0.031073446327683617, 0.031073446327683617, 0.031073446327683617, 0.480225988700565, 0.8559322033898306, 0.8135593220338984, 0.480225988700565, 0.20056497175141244, 0.18926553672316385, 0.480225988700565, 0.7824858757062146, 0.7853107344632768, 0.788135593220339, 0.7909604519774012, 0.7937853107344632, 0.7966101694915254, 0.7966101694915254, 0.7994350282485876, 0.7994350282485876, 0.7994350282485876, 0.8022598870056498, 0.8022598870056498, 0.8050847457627118, 0.8050847457627118, 0.8050847457627118, 0.807909604519774, 0.807909604519774, 0.8107344632768362, 0.8163841807909604, 0.8220338983050848, 0.827683615819209, 0.8333333333333334, 0.8418079096045198, 0.8785310734463276, 0.8926553672316384, 0.9096045197740112, 0.9378531073446328, 0.9463276836158192, 0.9491525423728814, 0.9491525423728814, 0.9463276836158192, 0.943502824858757, 0.923728813559322, 0.9011299435028248, 0.884180790960452, 0.8531073446327684, 0.8361581920903954, 0.8305084745762712, 0.8220338983050848, 0.8220338983050848, 0.8135593220338984, 0.807909604519774, 0.807909604519774, 0.8050847457627118, 0.8050847457627118, 0.8050847457627118, 0.8050847457627118, 0.8022598870056498, 0.8022598870056498, 0.7994350282485876, 0.7994350282485876, 0.7994350282485876, 0.7966101694915254, 0.7937853107344632, 0.7909604519774012, 0.788135593220339, 0.788135593220339, 0.7853107344632768, 0.7824858757062146, 0.2288135593220339, 0.031073446327683617, 0.02824858757062147, 0.01977401129943503, 0.01977401129943503, 0.01977401129943503, 0.01977401129943503, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.01694915254237288, 0.01977401129943503, 0.01977401129943503, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.01977401129943503, 0.01977401129943503, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.031073446327683617, 0.03389830508474576, 0.03954802259887006, 0.0423728813559322, 0.03672316384180791, 0.03389830508474576, 0.03672316384180791, 0.03954802259887006, 0.03954802259887006, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.05367231638418079, 0.07344632768361582, 0.07344632768361582, 0.07627118644067797, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.08757062146892655, 0.08757062146892655, 0.08757062146892655, 0.09887005649717515, 0.9067796610169492, 0.9124293785310734, 0.8926553672316384, 0.09322033898305085, 0.09887005649717515, 0.1016949152542373, 0.11299435028248588, 0.1384180790960452, 0.1553672316384181, 0.1864406779661017, 0.21468926553672316, 0.2740112994350282, 0.4350282485875706, 0.6129943502824858], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ORF6N.gap.json b/pfam_gap_rates/ORF6N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ec909795fb36b9b468be2f56ebd0d459361ce36
--- /dev/null
+++ b/pfam_gap_rates/ORF6N.gap.json
@@ -0,0 +1 @@
+{"family": "ORF6N", "n_seqs": 360, "length": 97, "gap_rates": [0.8388888888888889, 0.29444444444444445, 0.15833333333333333, 0.12777777777777777, 0.12222222222222222, 0.11388888888888889, 0.10277777777777777, 0.08888888888888889, 0.08611111111111111, 0.08055555555555556, 0.07777777777777778, 0.03333333333333333, 0.030555555555555555, 0.027777777777777776, 0.027777777777777776, 0.025, 0.025, 0.025, 0.025, 0.025, 0.027777777777777776, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.027777777777777776, 0.027777777777777776, 0.030555555555555555, 0.03333333333333333, 0.030555555555555555, 0.030555555555555555, 0.030555555555555555, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03611111111111111, 0.03611111111111111, 0.03333333333333333, 0.7583333333333333, 0.03333333333333333, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.019444444444444445, 0.025, 0.025, 0.027777777777777776, 0.027777777777777776, 0.030555555555555555, 0.030555555555555555, 0.28888888888888886, 0.9194444444444444, 0.9444444444444444, 0.9361111111111111, 0.8388888888888889, 0.2722222222222222, 0.18055555555555555, 0.17777777777777778, 0.10277777777777777, 0.10833333333333334, 0.11666666666666667, 0.11666666666666667, 0.09722222222222222, 0.5666666666666667, 0.7527777777777778, 0.9472222222222222, 0.8861111111111111, 0.6638888888888889, 0.42777777777777776, 0.21666666666666667, 0.09722222222222222, 0.09444444444444444, 0.08333333333333333, 0.07222222222222222, 0.075, 0.075, 0.075, 0.075, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.08055555555555556, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.08888888888888889, 0.09444444444444444, 0.09444444444444444, 0.1111111111111111, 0.275], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OST-HTH.gap.json b/pfam_gap_rates/OST-HTH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eac75c1b1ffd6818534f07009cbb23931c26bd35
--- /dev/null
+++ b/pfam_gap_rates/OST-HTH.gap.json
@@ -0,0 +1 @@
+{"family": "OST-HTH", "n_seqs": 1300, "length": 77, "gap_rates": [0.8961538461538462, 0.7469230769230769, 0.6492307692307693, 0.5092307692307693, 0.38, 0.29923076923076924, 0.24076923076923076, 0.19692307692307692, 0.15846153846153846, 0.13384615384615384, 0.11692307692307692, 0.10538461538461538, 0.08846153846153847, 0.08615384615384615, 0.06153846153846154, 0.6461538461538462, 0.7523076923076923, 0.7907692307692308, 0.7676923076923077, 0.7238461538461538, 0.6176923076923077, 0.07538461538461538, 0.07153846153846154, 0.1576923076923077, 0.05692307692307692, 0.9030769230769231, 0.21923076923076923, 0.01769230769230769, 0.016923076923076923, 0.015384615384615385, 0.013846153846153847, 0.012307692307692308, 0.010769230769230769, 0.01, 0.01, 0.009230769230769232, 0.009230769230769232, 0.008461538461538461, 0.006153846153846154, 0.055384615384615386, 0.006153846153846154, 0.006153846153846154, 0.4576923076923077, 0.014615384615384615, 0.002307692307692308, 0.0038461538461538464, 0.012307692307692308, 0.012307692307692308, 0.008461538461538461, 0.008461538461538461, 0.007692307692307693, 0.006153846153846154, 0.05, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.009230769230769232, 0.008461538461538461, 0.008461538461538461, 0.012307692307692308, 0.016153846153846154, 0.03230769230769231, 0.05, 0.045384615384615384, 0.4338461538461538, 0.08076923076923077, 0.09384615384615384, 0.11076923076923077, 0.13230769230769232, 0.17615384615384616, 0.22615384615384615, 0.2723076923076923, 0.34615384615384615, 0.4230769230769231, 0.536923076923077, 0.7223076923076923, 0.8438461538461538], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OTCace.gap.json b/pfam_gap_rates/OTCace.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62528d8d96e9600a28da693c770d5e1e08c742be
--- /dev/null
+++ b/pfam_gap_rates/OTCace.gap.json
@@ -0,0 +1 @@
+{"family": "OTCace", "n_seqs": 4508, "length": 188, "gap_rates": [0.6240017746228926, 0.15173025732031944, 0.07076308784383319, 0.05434782608695652, 0.04480922803904171, 0.04370008873114463, 0.043478260869565216, 0.04303460514640639, 0.04281277728482697, 0.04724933451641526, 0.5226264418811003, 0.04259094942324756, 0.3045696539485359, 0.023513753327417924, 0.01929902395740905, 0.016415261756876662, 0.015971606033717833, 0.01574977817213842, 0.01574977817213842, 0.01574977817213842, 0.015306122448979591, 0.01663708961845608, 0.015306122448979591, 0.015084294587400177, 0.015084294587400177, 0.014640638864241348, 0.013975155279503106, 0.013753327417923691, 0.012644188110026619, 0.012200532386867791, 0.9072759538598048, 0.012200532386867791, 0.012200532386867791, 0.012200532386867791, 0.012200532386867791, 0.011978704525288377, 0.011978704525288377, 0.011978704525288377, 0.011978704525288377, 0.9030612244897959, 0.012422360248447204, 0.012644188110026619, 0.013087843833185448, 0.2841614906832298, 0.24201419698314108, 0.14219165927240462, 0.14707187222715173, 0.15017746228926354, 0.33873114463176573, 0.358695652173913, 0.3686779059449867, 0.3544809228039042, 0.3365128660159716, 0.4083850931677019, 0.4525288376220053, 0.4307897071872227, 0.38864241348713396, 0.2732919254658385, 0.13797692990239574, 0.05723158828748891, 0.032830523513753325, 0.024179236912156166, 0.021960958296362024, 0.02040816326530612, 0.026175687666370896, 0.05412599822537711, 0.04281277728482697, 0.034826974267968054, 0.06699201419698314, 0.019964507542147295, 0.01574977817213842, 0.010425909494232475, 0.011535048802129548, 0.007985803016858917, 0.007985803016858917, 0.007985803016858917, 0.007763975155279503, 0.008429458740017746, 0.008207630878438331, 0.007763975155279503, 0.007985803016858917, 0.007985803016858917, 0.007985803016858917, 0.008207630878438331, 0.3045696539485359, 0.29347826086956524, 0.26486246672582076, 0.2615350488021295, 0.9392191659272404, 0.9440993788819876, 0.8185448092280391, 0.3118899733806566, 0.03748890860692103, 0.031055900621118012, 0.025066548358473825, 0.013753327417923691, 0.7366903283052352, 0.9048358473824313, 0.9458740017746229, 0.9121561668145519, 0.7597604259094942, 0.7200532386867791, 0.012200532386867791, 0.008429458740017746, 0.007320319432120674, 0.00709849157054126, 0.006654835847382431, 0.006433007985803017, 0.006654835847382431, 0.006211180124223602, 0.6047027506654836, 0.005989352262644188, 0.006211180124223602, 0.006654835847382431, 0.006876663708961846, 0.00709849157054126, 0.007320319432120674, 0.009538598047914819, 0.009760425909494233, 0.007763975155279503, 0.020186335403726708, 0.02839396628216504, 0.021073646850044366, 0.026397515527950312, 0.8890860692102928, 0.021960958296362024, 0.009538598047914819, 0.006876663708961846, 0.006654835847382431, 0.006654835847382431, 0.006654835847382431, 0.00709849157054126, 0.0075421472937000885, 0.007320319432120674, 0.23868677905944988, 0.20452528837622005, 0.010425909494232475, 0.007985803016858917, 0.8753327417923691, 0.8846495119787046, 0.8866459627329193, 0.8881987577639752, 0.8881987577639752, 0.8884205856255546, 0.8888642413487134, 0.8890860692102928, 0.8930789707187222, 0.8888642413487134, 0.8888642413487134, 0.8881987577639752, 0.8881987577639752, 0.8879769299023957, 0.8846495119787046, 0.8753327417923691, 0.8746672582076309, 0.008429458740017746, 0.008207630878438331, 0.008207630878438331, 0.008429458740017746, 0.00909494232475599, 0.008873114463176575, 0.008873114463176575, 0.00909494232475599, 0.009538598047914819, 0.01064773735581189, 0.010425909494232475, 0.01020408163265306, 0.009982253771073648, 0.009982253771073648, 0.009982253771073648, 0.010425909494232475, 0.010869565217391304, 0.011091393078970719, 0.011756876663708962, 0.013087843833185448, 0.013531499556344277, 0.013531499556344277, 0.013975155279503106, 0.015084294587400177, 0.015084294587400177, 0.016415261756876662, 0.023957409050576754, 0.030168589174800354, 0.030612244897959183, 0.033939662821650396, 0.07608695652173914, 0.22559893522626442, 0.9161490683229814], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OTT_1508_deam.gap.json b/pfam_gap_rates/OTT_1508_deam.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7eedf9259a8a3cb07801e2c746027b89f189350
--- /dev/null
+++ b/pfam_gap_rates/OTT_1508_deam.gap.json
@@ -0,0 +1 @@
+{"family": "OTT_1508_deam", "n_seqs": 222, "length": 89, "gap_rates": [0.11711711711711711, 0.02252252252252252, 0.02252252252252252, 0.02252252252252252, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.013513513513513514, 0.018018018018018018, 0.018018018018018018, 0.8963963963963963, 0.8918918918918919, 0.036036036036036036, 0.14414414414414414, 0.22522522522522523, 0.009009009009009009, 0.13063063063063063, 0.5180180180180181, 0.7117117117117117, 0.7702702702702703, 0.8828828828828829, 0.9234234234234234, 0.9414414414414415, 0.9414414414414415, 0.9324324324324325, 0.9054054054054054, 0.8468468468468469, 0.7432432432432432, 0.6351351351351351, 0.38738738738738737, 0.04954954954954955, 0.009009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0, 0.0, 0.0, 0.0045045045045045045, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045045045045045045, 0.8198198198198198, 0.8468468468468469, 0.8333333333333334, 0.8018018018018018, 0.013513513513513514, 0.17117117117117117, 0.1981981981981982, 0.35585585585585583, 0.5900900900900901, 0.6891891891891891, 0.8423423423423423, 0.8918918918918919, 0.9414414414414415, 0.8693693693693694, 0.7927927927927928, 0.6081081081081081, 0.5720720720720721, 0.22072072072072071, 0.1981981981981982, 0.05855855855855856, 0.07657657657657657, 0.06756756756756757, 0.06756756756756757, 0.07207207207207207, 0.07657657657657657, 0.07657657657657657, 0.07657657657657657, 0.07657657657657657, 0.08108108108108109, 0.0945945945945946, 0.13063063063063063, 0.11711711711711711, 0.13513513513513514, 0.17567567567567569, 0.2747747747747748, 0.5855855855855856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OapA.gap.json b/pfam_gap_rates/OapA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f367a94f17634e46015391f34575b93ab2670313
--- /dev/null
+++ b/pfam_gap_rates/OapA.gap.json
@@ -0,0 +1 @@
+{"family": "OapA", "n_seqs": 168, "length": 86, "gap_rates": [0.6488095238095238, 0.34523809523809523, 0.19047619047619047, 0.06547619047619048, 0.02976190476190476, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.023809523809523808, 0.03571428571428571, 0.06547619047619048, 0.05357142857142857, 0.20833333333333334, 0.10714285714285714, 0.08928571428571429, 0.017857142857142856, 0.011904761904761904, 0.02976190476190476, 0.023809523809523808, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.017857142857142856, 0.03571428571428571, 0.017857142857142856, 0.023809523809523808, 0.023809523809523808, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.023809523809523808, 0.02976190476190476, 0.02976190476190476, 0.03571428571428571, 0.05357142857142857, 0.07738095238095238, 0.5297619047619048, 0.19642857142857142, 0.21428571428571427, 0.22023809523809523, 0.20238095238095238, 0.22023809523809523, 0.2261904761904762, 0.25595238095238093, 0.26785714285714285, 0.26785714285714285, 0.32142857142857145, 0.47023809523809523, 0.47619047619047616, 0.5178571428571429, 0.6309523809523809, 0.7916666666666666, 0.9166666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OpgC_C.gap.json b/pfam_gap_rates/OpgC_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d323fe5f9a1e91a040a6a4e956d31cb69d02e9c
--- /dev/null
+++ b/pfam_gap_rates/OpgC_C.gap.json
@@ -0,0 +1 @@
+{"family": "OpgC_C", "n_seqs": 197, "length": 411, "gap_rates": [0.2182741116751269, 0.19796954314720813, 0.19289340101522842, 0.14720812182741116, 0.116751269035533, 0.1116751269035533, 0.10152284263959391, 0.09644670050761421, 0.09644670050761421, 0.09644670050761421, 0.09644670050761421, 0.08629441624365482, 0.07106598984771574, 0.07106598984771574, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.8730964467005076, 0.9035532994923858, 0.8121827411167513, 0.05583756345177665, 0.050761421319796954, 0.05583756345177665, 0.050761421319796954, 0.06091370558375635, 0.05583756345177665, 0.1218274111675127, 0.05583756345177665, 0.050761421319796954, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.05583756345177665, 0.04568527918781726, 0.04060913705583756, 0.04060913705583756, 0.04060913705583756, 0.04060913705583756, 0.04060913705583756, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ovate.gap.json b/pfam_gap_rates/Ovate.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bc23f9d3f07f5f6694ff70310ff854c2d356204
--- /dev/null
+++ b/pfam_gap_rates/Ovate.gap.json
@@ -0,0 +1 @@
+{"family": "Ovate", "n_seqs": 546, "length": 66, "gap_rates": [0.0989010989010989, 0.05860805860805861, 0.040293040293040296, 0.038461538461538464, 0.03663003663003663, 0.031135531135531136, 0.027472527472527472, 0.02564102564102564, 0.023809523809523808, 0.02197802197802198, 0.02197802197802198, 0.01098901098901099, 0.01098901098901099, 0.01282051282051282, 0.01098901098901099, 0.009157509157509158, 0.9413919413919414, 0.9432234432234432, 0.8571428571428571, 0.007326007326007326, 0.007326007326007326, 0.8663003663003663, 0.9139194139194139, 0.945054945054945, 0.8736263736263736, 0.8516483516483516, 0.007326007326007326, 0.009157509157509158, 0.009157509157509158, 0.005494505494505495, 0.0018315018315018315, 0.0018315018315018315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0018315018315018315, 0.005494505494505495, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.009157509157509158, 0.009157509157509158, 0.009157509157509158, 0.01282051282051282, 0.016483516483516484, 0.016483516483516484, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.020146520146520148, 0.02197802197802198, 0.023809523809523808, 0.0347985347985348, 0.03663003663003663, 0.0641025641025641, 0.1794871794871795, 0.315018315018315, 0.8864468864468864], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxidored-like.gap.json b/pfam_gap_rates/Oxidored-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd92ea35c39bf62ed9fdbe93bfcca0d9236c144b
--- /dev/null
+++ b/pfam_gap_rates/Oxidored-like.gap.json
@@ -0,0 +1 @@
+{"family": "Oxidored-like", "n_seqs": 342, "length": 47, "gap_rates": [0.8801169590643275, 0.6871345029239766, 0.6491228070175439, 0.6374269005847953, 0.6140350877192983, 0.5350877192982456, 0.4269005847953216, 0.3567251461988304, 0.23976608187134502, 0.11403508771929824, 0.07017543859649122, 0.05555555555555555, 0.03508771929824561, 0.02631578947368421, 0.48830409356725146, 0.4824561403508772, 0.02631578947368421, 0.023391812865497075, 0.014619883040935672, 0.014619883040935672, 0.0, 0.0, 0.008771929824561403, 0.011695906432748537, 0.011695906432748537, 0.014619883040935672, 0.017543859649122806, 0.011695906432748537, 0.011695906432748537, 0.008771929824561403, 0.011695906432748537, 0.011695906432748537, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.017543859649122806, 0.029239766081871343, 0.06725146198830409, 0.09064327485380116, 0.0935672514619883, 0.11403508771929824, 0.17543859649122806, 0.23684210526315788, 0.30994152046783624, 0.38596491228070173, 0.5467836257309941, 0.6374269005847953], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/P-mevalo_kinase.gap.json b/pfam_gap_rates/P-mevalo_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b81ed419c760591ee4145ef081c5891f5f9fe035
--- /dev/null
+++ b/pfam_gap_rates/P-mevalo_kinase.gap.json
@@ -0,0 +1 @@
+{"family": "P-mevalo_kinase", "n_seqs": 138, "length": 133, "gap_rates": [0.09420289855072464, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.050724637681159424, 0.5, 0.8188405797101449, 0.8260869565217391, 0.7246376811594203, 0.47101449275362317, 0.13768115942028986, 0.09420289855072464, 0.057971014492753624, 0.043478260869565216, 0.036231884057971016, 0.043478260869565216, 0.050724637681159424, 0.050724637681159424, 0.043478260869565216, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.028985507246376812, 0.021739130434782608, 0.007246376811594203, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.028985507246376812, 0.043478260869565216, 0.043478260869565216, 0.036231884057971016, 0.021739130434782608, 0.014492753623188406, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.08695652173913043, 0.08695652173913043, 0.07971014492753623, 0.07246376811594203, 0.057971014492753624, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.021739130434782608, 0.028985507246376812, 0.014492753623188406, 0.8260869565217391, 0.855072463768116, 0.8260869565217391, 0.8260869565217391, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.021739130434782608, 0.12318840579710146, 0.3115942028985507, 0.8695652173913043, 0.9057971014492754, 0.9420289855072463, 0.9420289855072463, 0.9420289855072463, 0.9202898550724637, 0.8768115942028986, 0.8260869565217391, 0.5, 0.35507246376811596, 0.9057971014492754, 0.8623188405797102, 0.16666666666666666, 0.08695652173913043, 0.10144927536231885, 0.028985507246376812, 0.028985507246376812, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.050724637681159424, 0.057971014492753624, 0.057971014492753624, 0.16666666666666666, 0.2028985507246377, 0.38405797101449274, 0.9347826086956522], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/P34-Arc.gap.json b/pfam_gap_rates/P34-Arc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..59bf314c7c65626e4de1c1bec8cba05908ed034d
--- /dev/null
+++ b/pfam_gap_rates/P34-Arc.gap.json
@@ -0,0 +1 @@
+{"family": "P34-Arc", "n_seqs": 356, "length": 259, "gap_rates": [0.351123595505618, 0.31741573033707865, 0.3146067415730337, 0.3089887640449438, 0.3089887640449438, 0.3089887640449438, 0.3089887640449438, 0.30337078651685395, 0.300561797752809, 0.29775280898876405, 0.2893258426966292, 0.28370786516853935, 0.2808988764044944, 0.24719101123595505, 0.199438202247191, 0.19662921348314608, 0.19662921348314608, 0.18820224719101122, 0.17696629213483145, 0.16573033707865167, 0.16292134831460675, 0.1601123595505618, 0.1601123595505618, 0.1601123595505618, 0.16292134831460675, 0.16292134831460675, 0.1601123595505618, 0.16292134831460675, 0.5955056179775281, 0.8455056179775281, 0.9466292134831461, 0.8398876404494382, 0.14325842696629212, 0.13202247191011235, 0.12078651685393259, 0.12078651685393259, 0.1151685393258427, 0.1151685393258427, 0.11235955056179775, 0.11235955056179775, 0.10674157303370786, 0.10674157303370786, 0.10674157303370786, 0.10674157303370786, 0.10674157303370786, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PAP2_3.gap.json b/pfam_gap_rates/PAP2_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa05984a802a762b9a56956bda0da97ced7b7383
--- /dev/null
+++ b/pfam_gap_rates/PAP2_3.gap.json
@@ -0,0 +1 @@
+{"family": "PAP2_3", "n_seqs": 958, "length": 217, "gap_rates": [0.778705636743215, 0.7077244258872651, 0.68580375782881, 0.6576200417536534, 0.6440501043841336, 0.6336116910229646, 0.6294363256784968, 0.6231732776617954, 0.6148225469728601, 0.639874739039666, 0.6106471816283925, 0.6127348643006263, 0.592901878914405, 0.5688935281837161, 0.5532359081419624, 0.5386221294363257, 0.5020876826722338, 0.4801670146137787, 0.5803757828810021, 0.872651356993737, 0.4321503131524008, 0.40187891440501045, 0.3757828810020877, 0.34029227557411273, 0.3173277661795407, 0.2985386221294363, 0.278705636743215, 0.8757828810020877, 0.2546972860125261, 0.2578288100208768, 0.2359081419624217, 0.22025052192066805, 0.20668058455114824, 0.19728601252609604, 0.174321503131524, 0.15970772442588727, 0.8569937369519833, 0.1315240083507307, 0.12839248434237996, 0.21294363256784968, 0.21294363256784968, 0.12317327766179541, 0.12004175365344467, 0.12004175365344467, 0.11586638830897704, 0.11377870563674322, 0.10438413361169102, 0.10438413361169102, 0.10647181628392484, 0.10438413361169102, 0.10438413361169102, 0.10751565762004175, 0.1617954070981211, 0.151356993736952, 0.9498956158663883, 0.6346555323590815, 0.12004175365344467, 0.09707724425887265, 0.08768267223382047, 0.07515657620041753, 0.0720250521920668, 0.0709812108559499, 0.07933194154488518, 0.081419624217119, 0.0824634655532359, 0.08663883089770355, 0.08663883089770355, 0.08663883089770355, 0.08768267223382047, 0.08768267223382047, 0.08663883089770355, 0.08663883089770355, 0.08663883089770355, 0.08768267223382047, 0.08768267223382047, 0.08872651356993737, 0.08663883089770355, 0.08872651356993737, 0.08663883089770355, 0.08559498956158663, 0.08872651356993737, 0.08663883089770355, 0.08663883089770355, 0.08559498956158663, 0.08663883089770355, 0.08663883089770355, 0.08663883089770355, 0.08977035490605428, 0.08977035490605428, 0.1430062630480167, 0.151356993736952, 0.14509394572025053, 0.7181628392484343, 0.7870563674321504, 0.9237995824634656, 0.94258872651357, 0.9446764091858038, 0.9331941544885177, 0.8089770354906054, 0.7494780793319415, 0.5762004175365344, 0.3496868475991649, 0.3903966597077244, 0.37160751565762007, 0.348643006263048, 0.3162839248434238, 0.2964509394572025, 0.2807933194154488, 0.2745302713987474, 0.2254697286012526, 0.21294363256784968, 0.2056367432150313, 0.19206680584551147, 0.19728601252609604, 0.1951983298538622, 0.2035490605427975, 0.174321503131524, 0.767223382045929, 0.8068893528183716, 0.8663883089770354, 0.9237995824634656, 0.941544885177453, 0.9081419624217119, 0.8277661795407099, 0.7933194154488518, 0.7233820459290188, 0.5960334029227558, 0.5636743215031316, 0.4780793319415449, 0.44572025052192066, 0.4144050104384134, 0.33402922755741127, 0.29331941544885176, 0.2839248434237996, 0.1826722338204593, 0.10960334029227557, 0.1127348643006263, 0.10855949895615867, 0.10334029227557412, 0.10125260960334029, 0.12108559498956159, 0.3068893528183716, 0.24425887265135698, 0.09603340292275574, 0.08663883089770355, 0.08455114822546973, 0.081419624217119, 0.07620041753653445, 0.8653444676409185, 0.8789144050104384, 0.860125260960334, 0.07306889352818371, 0.07306889352818371, 0.07515657620041753, 0.07515657620041753, 0.07515657620041753, 0.07411273486430063, 0.07411273486430063, 0.07306889352818371, 0.07620041753653445, 0.0720250521920668, 0.0720250521920668, 0.0720250521920668, 0.0720250521920668, 0.0720250521920668, 0.07306889352818371, 0.1837160751565762, 0.17954070981210857, 0.15031315240083507, 0.10647181628392484, 0.1022964509394572, 0.11586638830897704, 0.13778705636743216, 0.1440501043841336, 0.9394572025052192, 0.8465553235908142, 0.5177453027139874, 0.38413361169102295, 0.12212943632567849, 0.11586638830897704, 0.11586638830897704, 0.11586638830897704, 0.11899791231732777, 0.11691022964509394, 0.11795407098121086, 0.11899791231732777, 0.11795407098121086, 0.11795407098121086, 0.11795407098121086, 0.11795407098121086, 0.11795407098121086, 0.11795407098121086, 0.11899791231732777, 0.11899791231732777, 0.11795407098121086, 0.11795407098121086, 0.11795407098121086, 0.11795407098121086, 0.11795407098121086, 0.11795407098121086, 0.11795407098121086, 0.11899791231732777, 0.11899791231732777, 0.11899791231732777, 0.11899791231732777, 0.11899791231732777, 0.11899791231732777, 0.11899791231732777, 0.12004175365344467, 0.12004175365344467, 0.12212943632567849, 0.1409185803757829, 0.15031315240083507, 0.17849686847599164, 0.23903966597077245, 0.4822546972860125, 0.8789144050104384], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PASTA.gap.json b/pfam_gap_rates/PASTA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21df7fe6d41dc1a2d07a48d2e113d13f3d763a3c
--- /dev/null
+++ b/pfam_gap_rates/PASTA.gap.json
@@ -0,0 +1 @@
+{"family": "PASTA", "n_seqs": 5000, "length": 69, "gap_rates": [0.558, 0.2278, 0.0852, 0.0572, 0.0346, 0.0222, 0.0178, 0.0142, 0.0112, 0.0082, 0.0074, 0.0074, 0.0072, 0.0066, 0.0062, 0.005, 0.0042, 0.0036, 0.0028, 0.003, 0.0188, 0.0088, 0.0018, 0.919, 0.8194, 0.2056, 0.219, 0.2108, 0.2022, 0.2034, 0.2004, 0.2592, 0.9244, 0.7196, 0.0356, 0.0272, 0.0068, 0.0044, 0.0026, 0.0014, 0.0018, 0.0016, 0.001, 0.8674, 0.0022, 0.0014, 0.0012, 0.0018, 0.003, 0.0036, 0.0022, 0.0438, 0.022, 0.0128, 0.0098, 0.0132, 0.9456, 0.0302, 0.0146, 0.017, 0.019, 0.0226, 0.0244, 0.0312, 0.0388, 0.0632, 0.1186, 0.3126, 0.728], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAS_9.gap.json b/pfam_gap_rates/PAS_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8acddbdd832b823d3e90e7635bdfaff34e3c7683
--- /dev/null
+++ b/pfam_gap_rates/PAS_9.gap.json
@@ -0,0 +1 @@
+{"family": "PAS_9", "n_seqs": 5000, "length": 121, "gap_rates": [0.9126, 0.5782, 0.4068, 0.3032, 0.2626, 0.2344, 0.8992, 0.1996, 0.2026, 0.1006, 0.0754, 0.0574, 0.13, 0.0366, 0.0336, 0.8988, 0.0304, 0.0292, 0.0278, 0.0274, 0.026, 0.0256, 0.0254, 0.026, 0.024, 0.0274, 0.0326, 0.0464, 0.0396, 0.9444, 0.0356, 0.0306, 0.025, 0.028, 0.0232, 0.0206, 0.0376, 0.0272, 0.0252, 0.0226, 0.0206, 0.0192, 0.019, 0.5526, 0.8618, 0.9304, 0.9442, 0.9092, 0.7848, 0.4766, 0.395, 0.2538, 0.0976, 0.0694, 0.0546, 0.0334, 0.0316, 0.0288, 0.0276, 0.0266, 0.0274, 0.0276, 0.0286, 0.0348, 0.0436, 0.0464, 0.051, 0.0352, 0.5854, 0.7626, 0.9038, 0.943, 0.9292, 0.8584, 0.6352, 0.4794, 0.0642, 0.0378, 0.0308, 0.0282, 0.0278, 0.0272, 0.0274, 0.028, 0.0284, 0.0292, 0.0296, 0.0446, 0.0444, 0.061, 0.0534, 0.0506, 0.039, 0.0704, 0.0636, 0.04, 0.042, 0.0418, 0.0456, 0.047, 0.0506, 0.091, 0.107, 0.115, 0.9414, 0.1014, 0.1046, 0.0984, 0.0876, 0.0958, 0.1414, 0.2938, 0.2772, 0.1012, 0.105, 0.1146, 0.1258, 0.1348, 0.1528, 0.183, 0.4294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PBP.gap.json b/pfam_gap_rates/PBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bf6b918b544f12c6efb8aab698e1444fd61fdd4
--- /dev/null
+++ b/pfam_gap_rates/PBP.gap.json
@@ -0,0 +1 @@
+{"family": "PBP", "n_seqs": 2267, "length": 192, "gap_rates": [0.8103220114689016, 0.7891486546096163, 0.7776797529775034, 0.7640052933392149, 0.7141596823996471, 0.7278341420379356, 0.9378032642258491, 0.9435377150419056, 0.9303043670048522, 0.7220996912218791, 0.5659461843846493, 0.5200705778561976, 0.48081164534627263, 0.36171151301279225, 0.3074547860608734, 0.2121746801940891, 0.8645787384208204, 0.7869430966034406, 0.1305690339655933, 0.11954124393471548, 0.11380679311865902, 0.1129245699161888, 0.11204234671371857, 0.11027790030877813, 0.9351565946184385, 0.9444199382443759, 0.929422143802382, 0.10983678870754301, 0.3109836788707543, 0.2399647110719012, 0.14865460961623292, 0.11821790913101014, 0.05205116894574327, 0.043670048522276135, 0.03970004411116013, 0.03705337450374945, 0.03440670489633877, 0.03352448169386855, 0.030436700485222762, 0.022055580061755623, 0.020291133656815175, 0.019850022055580063, 0.01940891045434495, 0.020291133656815175, 0.0211733568592854, 0.9122187913542126, 0.94133215703573, 0.9479488310542568, 0.9258932509925011, 0.9086898985443317, 0.0211733568592854, 0.19894133215703572, 0.06352007057785619, 0.054256726951918834, 0.06925452139391267, 0.9347154830172033, 0.45522717247463607, 0.3974415527128363, 0.5337450374944861, 0.9285399205999118, 0.948831054256727, 0.5915306572562858, 0.5178650198500221, 0.01808557565063961, 0.015880017644464048, 0.014997794441993825, 0.0141155712395236, 0.015438906043228937, 0.014997794441993825, 0.014556682840758712, 0.018526687251874726, 0.015880017644464048, 0.015438906043228937, 0.2964269960299956, 0.2681958535509484, 0.20026466696074108, 0.20247022496691663, 0.22893692104102337, 0.2911336568151742, 0.2827525363917071, 0.2964269960299956, 0.37715041905602115, 0.3683281870313189, 0.4843405381561535, 0.5266872518747243, 0.6074106749007498, 0.6691662990736656, 0.7432730480811646, 0.8345831495368328, 0.9404499338332598, 0.9351565946184385, 0.7935597706219674, 0.7075430083811204, 0.6294662549625055, 0.5558006175562418, 0.49713277459197175, 0.4662549625055139, 0.3533303925893251, 0.34097926775474197, 0.27040141155712394, 0.22540802823114248, 0.1729157476841641, 0.1349801499779444, 0.1407146007940009, 0.14424349360388178, 0.1310101455668284, 0.8517865019850022, 0.8773709748566387, 0.8954565505072783, 0.9241288045875606, 0.9470666078517865, 0.9095721217468019, 0.8857520952801059, 0.8667842964269961, 0.7834142037935597, 0.6206440229378033, 0.5050727834142038, 0.45831495368328184, 0.030436700485222762, 0.018967798853109837, 0.01808557565063961, 0.01808557565063961, 0.01808557565063961, 0.015880017644464048, 0.016321129245699163, 0.016321129245699163, 0.018526687251874726, 0.0176444640494045, 0.017203352448169385, 0.019850022055580063, 0.40758711954124394, 0.3286281429201588, 0.9430966034406705, 0.02293780326422585, 0.022055580061755623, 0.022496691662990738, 0.022055580061755623, 0.022496691662990738, 0.023820026466696075, 0.024702249669166298, 0.024702249669166298, 0.7547419497132775, 0.7860608734009704, 0.9364799294221438, 0.9047198941332157, 0.7701808557565064, 0.7348919276576974, 0.027790030877812087, 0.14733127481252756, 0.1301279223643582, 0.11468901632112924, 0.11601235112483459, 0.24261138067931187, 0.8751654168504631, 0.929422143802382, 0.9444199382443759, 0.9047198941332157, 0.8592853992059991, 0.3074547860608734, 0.21746801940891045, 0.8826643140714601, 0.2007057785619762, 0.18570798411998235, 0.1901191001323335, 0.1940891045434495, 0.8967798853109836, 0.19894133215703572, 0.19938244375827086, 0.21746801940891045, 0.20599911777679752, 0.20644022937803264, 0.21041023378914867, 0.21482134980149978, 0.2218791354212616, 0.22937803264225848, 0.7362152624614028, 0.23952359947066607, 0.24702249669166298, 0.7503308337009263, 0.26246140273489194, 0.26246140273489194, 0.28407587119541244, 0.28804587560652845, 0.2951036612262902, 0.30613145125716806, 0.38685487428319365, 0.3423026025584473, 0.34891927657697397, 0.3639170710189678, 0.3934715483017203, 0.4455227172474636, 0.5050727834142038], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PBP_like_2.gap.json b/pfam_gap_rates/PBP_like_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0c2f3559a9bee8f8e8ac19c94c7078428a5180e
--- /dev/null
+++ b/pfam_gap_rates/PBP_like_2.gap.json
@@ -0,0 +1 @@
+{"family": "PBP_like_2", "n_seqs": 3339, "length": 354, "gap_rates": [0.9341120095837077, 0.8313866427073974, 0.7286612758310872, 0.6400119796346212, 0.539383048817011, 0.46331236897274636, 0.4052111410601977, 0.3611859838274933, 0.4058101227912549, 0.31805929919137466, 0.18448637316561844, 0.16591793950284517, 0.1518418688230009, 0.14405510631925728, 0.132973944294699, 0.1320754716981132, 0.129979035639413, 0.1281820904462414, 0.12488769092542677, 0.12219227313566937, 0.12189278227014076, 0.11919736448038334, 0.11829889188379754, 0.11740041928721175, 0.11799940101826895, 0.11590296495956873, 0.12608565438754119, 0.13447139862234203, 0.11799940101826895, 0.8538484576220425, 0.11021263851452531, 0.1096136567834681, 0.1090146750524109, 0.1078167115902965, 0.33812518718179096, 0.1305780173704702, 0.10182689427972447, 0.09733453129679545, 0.09493860437256664, 0.9442946990116802, 0.09194369571728063, 0.08505540581012279, 0.08086253369272237, 0.08056304282719377, 0.07936507936507936, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PBS_linker_poly.gap.json b/pfam_gap_rates/PBS_linker_poly.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2ade583cbde5aeb610fa59f82ad87a7fc491999
--- /dev/null
+++ b/pfam_gap_rates/PBS_linker_poly.gap.json
@@ -0,0 +1 @@
+{"family": "PBS_linker_poly", "n_seqs": 462, "length": 127, "gap_rates": [0.4134199134199134, 0.15151515151515152, 0.04112554112554113, 0.021645021645021644, 0.017316017316017316, 0.012987012987012988, 0.010822510822510822, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.015151515151515152, 0.06493506493506493, 0.8506493506493507, 0.7294372294372294, 0.19480519480519481, 0.017316017316017316, 0.008658008658008658, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.006493506493506494, 0.006493506493506494, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.0021645021645021645, 0.0021645021645021645, 0.0021645021645021645, 0.0021645021645021645, 0.0021645021645021645, 0.0021645021645021645, 0.0021645021645021645, 0.0021645021645021645, 0.0021645021645021645, 0.0021645021645021645, 0.0021645021645021645, 0.015151515151515152, 0.006493506493506494, 0.006493506493506494, 0.0021645021645021645, 0.0021645021645021645, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008658008658008658, 0.015151515151515152, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0021645021645021645, 0.0021645021645021645, 0.006493506493506494, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.02813852813852814, 0.07792207792207792], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PCI.gap.json b/pfam_gap_rates/PCI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff968b85f445880216d398db5e74a75f20f5dcbb
--- /dev/null
+++ b/pfam_gap_rates/PCI.gap.json
@@ -0,0 +1 @@
+{"family": "PCI", "n_seqs": 4521, "length": 146, "gap_rates": [0.5080734350807343, 0.35102853351028535, 0.29108604291086043, 0.22605618226056182, 0.1846936518469365, 0.17075868170758682, 0.1585932315859323, 0.14421588144215883, 0.13381995133819952, 0.12873258128732581, 0.123866401238664, 0.11789427117894272, 0.11324928113249282, 0.9143994691439947, 0.10440168104401681, 0.1028533510285335, 0.10019907100199071, 0.09776598097765982, 0.0953328909533289, 0.09179385091793851, 0.09378456093784561, 0.0911302809113028, 0.08847600088476001, 0.08803362088033621, 0.0836098208360982, 0.8540145985401459, 0.860650298606503, 0.8690555186905552, 0.8759124087591241, 0.8852023888520238, 0.8880778588807786, 0.9013492590134926, 0.9267861092678611, 0.9327582393275824, 0.9416058394160584, 0.9338641893386419, 0.9309887193098872, 0.9024552090245521, 0.8971466489714665, 0.8867507188675072, 0.8794514487945145, 0.8732581287325812, 0.8661800486618005, 0.8575536385755363, 0.8398584383985844, 0.45919044459190445, 0.20968812209688123, 0.20106171201061712, 0.1804910418049104, 0.1444370714443707, 0.10064145100641451, 0.10727715107277151, 0.09356337093563372, 0.08759124087591241, 0.0856005308560053, 0.0734350807343508, 0.03185136031851361, 0.8714886087148861, 0.8816633488166334, 0.8885202388852024, 0.9121875691218757, 0.9243530192435302, 0.9289980092899801, 0.9163901791639018, 0.8993585489935855, 0.8847600088476001, 0.8741428887414289, 0.862862198628622, 0.0789648307896483, 0.0767529307675293, 0.021234240212342402, 0.019243530192435302, 0.0165892501658925, 0.015040920150409202, 0.013934970139349702, 0.013934970139349702, 0.0123866401238664, 0.0103959301039593, 0.0095111700951117, 0.008626410086264101, 0.0081840300818403, 0.0081840300818403, 0.010617120106171201, 0.0090687900906879, 0.008626410086264101, 0.008626410086264101, 0.0072992700729927005, 0.7673081176730812, 0.8294625082946251, 0.8113249281132493, 0.7573545675735457, 0.0061933200619332, 0.0053085600530856005, 0.003981420039814201, 0.0035390400353904005, 0.0030966600309666, 0.0033178500331785005, 0.0033178500331785005, 0.003981420039814201, 0.0037602300376023004, 0.0035390400353904005, 0.0042026100420261, 0.0050873700508737, 0.0053085600530856005, 0.004866180048661801, 0.004866180048661801, 0.0050873700508737, 0.0053085600530856005, 0.005529750055297501, 0.8712674187126742, 0.8821057288210573, 0.9152842291528422, 0.8962618889626189, 0.8770183587701836, 0.6921035169210352, 0.0061933200619332, 0.006414510064145101, 0.006856890068568901, 0.007962840079628402, 0.008847600088476001, 0.0090687900906879, 0.0095111700951117, 0.0095111700951117, 0.0101747401017474, 0.013050210130502102, 0.013271400132714002, 0.013713780137137801, 0.014819730148197301, 0.017474010174740102, 0.0181375801813758, 0.0188011501880115, 0.0203494802034948, 0.022119000221190004, 0.023667330236673303, 0.023888520238885203, 0.0269851802698518, 0.035611590356115906, 0.038265870382658704, 0.043574430435744306, 0.0499889404998894, 0.061933200619332, 0.0809555408095554, 0.10860429108604291, 0.17164344171643442, 0.3939393939393939, 0.8706038487060385], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PDDEXK_2.gap.json b/pfam_gap_rates/PDDEXK_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4aed212c568e8e3edaa9a2c6df5ba7cdc11cf99
--- /dev/null
+++ b/pfam_gap_rates/PDDEXK_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PDT.gap.json b/pfam_gap_rates/PDT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..23b6ed1a3d19f5906fce70cc0447214199251746
--- /dev/null
+++ b/pfam_gap_rates/PDT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PE-PPE.gap.json b/pfam_gap_rates/PE-PPE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df5a018189d4dd550cfc14a67477ea30ce9147d9
--- /dev/null
+++ b/pfam_gap_rates/PE-PPE.gap.json
@@ -0,0 +1 @@
+{"family": "PE-PPE", "n_seqs": 114, "length": 261, "gap_rates": [0.7894736842105263, 0.7719298245614035, 0.7192982456140351, 0.6842105263157895, 0.5263157894736842, 0.39473684210526316, 0.30701754385964913, 0.2807017543859649, 0.2807017543859649, 0.2807017543859649, 0.2719298245614035, 0.2719298245614035, 0.9385964912280702, 0.9385964912280702, 0.9473684210526315, 0.9473684210526315, 0.9385964912280702, 0.9385964912280702, 0.9385964912280702, 0.2719298245614035, 0.2807017543859649, 0.2719298245614035, 0.2631578947368421, 0.3157894736842105, 0.39473684210526316, 0.3508771929824561, 0.7982456140350878, 0.23684210526315788, 0.22807017543859648, 0.22807017543859648, 0.20175438596491227, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.18421052631578946, 0.18421052631578946, 0.15789473684210525, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.13157894736842105, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PEHE.gap.json b/pfam_gap_rates/PEHE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6ba6d9413160fb3ada285a346d70ed650faeb83
--- /dev/null
+++ b/pfam_gap_rates/PEHE.gap.json
@@ -0,0 +1 @@
+{"family": "PEHE", "n_seqs": 135, "length": 220, "gap_rates": [0.34074074074074073, 0.14814814814814814, 0.0962962962962963, 0.0962962962962963, 0.08888888888888889, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.8814814814814815, 0.21481481481481482, 0.2222222222222222, 0.21481481481481482, 0.15555555555555556, 0.1259259259259259, 0.13333333333333333, 0.08888888888888889, 0.08888888888888889, 0.08888888888888889, 0.8740740740740741, 0.9111111111111111, 0.9407407407407408, 0.9259259259259259, 0.8814814814814815, 0.8592592592592593, 0.07407407407407407, 0.11851851851851852, 0.1037037037037037, 0.08888888888888889, 0.6444444444444445, 0.42962962962962964, 0.8074074074074075, 0.8222222222222222, 0.8666666666666667, 0.8814814814814815, 0.9037037037037037, 0.9333333333333333, 0.9333333333333333, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9407407407407408, 0.9333333333333333, 0.9111111111111111, 0.8888888888888888, 0.8740740740740741, 0.8592592592592593, 0.8148148148148148, 0.8, 0.044444444444444446, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.5111111111111111, 0.5037037037037037, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.014814814814814815, 0.022222222222222223, 0.014814814814814815, 0.02962962962962963, 0.02962962962962963, 0.014814814814814815, 0.014814814814814815, 0.037037037037037035, 0.044444444444444446, 0.044444444444444446, 0.014814814814814815, 0.014814814814814815, 0.022222222222222223, 0.014814814814814815, 0.014814814814814815, 0.22962962962962963, 0.2, 0.2, 0.06666666666666667, 0.31851851851851853, 0.31851851851851853, 0.1037037037037037, 0.15555555555555556, 0.35555555555555557, 0.6962962962962963, 0.8740740740740741, 0.8962962962962963, 0.9185185185185185, 0.9333333333333333, 0.9259259259259259, 0.9185185185185185, 0.8888888888888888, 0.7555555555555555, 0.6814814814814815, 0.3851851851851852, 0.34074074074074073, 0.31851851851851853, 0.15555555555555556, 0.14074074074074075, 0.18518518518518517, 0.17037037037037037, 0.16296296296296298, 0.17037037037037037, 0.17777777777777778, 0.9259259259259259, 0.9259259259259259, 0.9333333333333333, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9333333333333333, 0.9333333333333333, 0.9259259259259259, 0.9259259259259259, 0.14074074074074075, 0.14814814814814814, 0.15555555555555556, 0.15555555555555556, 0.16296296296296298, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.2, 0.2, 0.9111111111111111, 0.9259259259259259, 0.9259259259259259, 0.9407407407407408, 0.9407407407407408, 0.9407407407407408, 0.9407407407407408, 0.9259259259259259, 0.9259259259259259, 0.9037037037037037, 0.2074074074074074, 0.2074074074074074, 0.2074074074074074, 0.21481481481481482, 0.23703703703703705, 0.4666666666666667, 0.28888888888888886, 0.28888888888888886, 0.28888888888888886, 0.28888888888888886, 0.28888888888888886, 0.2962962962962963, 0.3037037037037037, 0.3111111111111111, 0.3111111111111111, 0.31851851851851853, 0.6148148148148148, 0.6, 0.37037037037037035, 0.37777777777777777, 0.3851851851851852, 0.3925925925925926, 0.4074074074074074, 0.4222222222222222, 0.45185185185185184, 0.45185185185185184, 0.4740740740740741, 0.4888888888888889, 0.7925925925925926, 0.837037037037037, 0.837037037037037, 0.8666666666666667, 0.8740740740740741, 0.8814814814814815, 0.8814814814814815, 0.8814814814814815, 0.8814814814814815, 0.8814814814814815, 0.8814814814814815, 0.8814814814814815, 0.8814814814814815, 0.8740740740740741, 0.837037037037037, 0.837037037037037, 0.837037037037037, 0.8222222222222222, 0.8444444444444444, 0.8444444444444444, 0.8740740740740741, 0.8518518518518519, 0.8518518518518519, 0.8740740740740741, 0.8814814814814815, 0.9037037037037037, 0.9111111111111111, 0.9333333333333333, 0.9333333333333333, 0.9185185185185185, 0.9111111111111111, 0.8962962962962963, 0.8814814814814815, 0.8740740740740741, 0.8666666666666667, 0.7185185185185186, 0.7185185185185186, 0.7185185185185186, 0.7185185185185186, 0.7185185185185186], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEN-2.gap.json b/pfam_gap_rates/PEN-2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e60c2e143588d4ecbf0e04b4bb34b85d2420a034
--- /dev/null
+++ b/pfam_gap_rates/PEN-2.gap.json
@@ -0,0 +1 @@
+{"family": "PEN-2", "n_seqs": 139, "length": 94, "gap_rates": [0.8776978417266187, 0.381294964028777, 0.26618705035971224, 0.2302158273381295, 0.2014388489208633, 0.16546762589928057, 0.16546762589928057, 0.16546762589928057, 0.16546762589928057, 0.16546762589928057, 0.17266187050359713, 0.14388489208633093, 0.1366906474820144, 0.12949640287769784, 0.1223021582733813, 0.11510791366906475, 0.1079136690647482, 0.1079136690647482, 0.1079136690647482, 0.1079136690647482, 0.1079136690647482, 0.1079136690647482, 0.1079136690647482, 0.1079136690647482, 0.09352517985611511, 0.10071942446043165, 0.1079136690647482, 0.09352517985611511, 0.09352517985611511, 0.10071942446043165, 0.11510791366906475, 0.09352517985611511, 0.09352517985611511, 0.11510791366906475, 0.11510791366906475, 0.09352517985611511, 0.1079136690647482, 0.11510791366906475, 0.1223021582733813, 0.2302158273381295, 0.23741007194244604, 0.39568345323741005, 0.37410071942446044, 0.2949640287769784, 0.12949640287769784, 0.11510791366906475, 0.10071942446043165, 0.10071942446043165, 0.1079136690647482, 0.09352517985611511, 0.07913669064748201, 0.07194244604316546, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.07194244604316546, 0.07194244604316546, 0.07913669064748201, 0.07913669064748201, 0.08633093525179857, 0.09352517985611511, 0.10071942446043165, 0.10071942446043165, 0.1079136690647482, 0.1223021582733813, 0.12949640287769784, 0.8057553956834532, 0.14388489208633093, 0.1510791366906475, 0.15827338129496402, 0.2158273381294964, 0.2302158273381295, 0.19424460431654678, 0.2014388489208633, 0.2014388489208633, 0.2014388489208633, 0.39568345323741005, 0.22302158273381295, 0.2302158273381295, 0.2446043165467626, 0.2446043165467626, 0.2805755395683453, 0.43884892086330934], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEP-utilizers.gap.json b/pfam_gap_rates/PEP-utilizers.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b1f713d66e770193ff6838120303882ea59ac8f
--- /dev/null
+++ b/pfam_gap_rates/PEP-utilizers.gap.json
@@ -0,0 +1 @@
+{"family": "PEP-utilizers", "n_seqs": 5000, "length": 86, "gap_rates": [0.5466, 0.3796, 0.1314, 0.0428, 0.0138, 0.0112, 0.01, 0.0096, 0.0092, 0.009, 0.0084, 0.0072, 0.0068, 0.0066, 0.0062, 0.0062, 0.0062, 0.0058, 0.0062, 0.0052, 0.0046, 0.6766, 0.6488, 0.004, 0.004, 0.0038, 0.0036, 0.0032, 0.0032, 0.003, 0.0028, 0.0028, 0.0028, 0.0028, 0.0022, 0.0018, 0.0018, 0.002, 0.0024, 0.0018, 0.0018, 0.0016, 0.0022, 0.0024, 0.0022, 0.002, 0.0018, 0.002, 0.0022, 0.003, 0.0034, 0.0036, 0.0052, 0.0052, 0.005, 0.0058, 0.0072, 0.0094, 0.0806, 0.759, 0.7604, 0.7658, 0.7662, 0.7684, 0.7808, 0.776, 0.7664, 0.766, 0.7658, 0.76, 0.7516, 0.0236, 0.0122, 0.0112, 0.0116, 0.0118, 0.0124, 0.0126, 0.0126, 0.0132, 0.0134, 0.0182, 0.0216, 0.04, 0.0756, 0.0792], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEP-utilizers_C.gap.json b/pfam_gap_rates/PEP-utilizers_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a584b372a5db83fea2f623b797ef95cf6b5372b
--- /dev/null
+++ b/pfam_gap_rates/PEP-utilizers_C.gap.json
@@ -0,0 +1 @@
+{"family": "PEP-utilizers_C", "n_seqs": 3823, "length": 387, "gap_rates": [0.8877844624640335, 0.7653675124247973, 0.6092074287208998, 0.4794663876536751, 0.4224431075071933, 0.3761443892231232, 0.3502484959455925, 0.3269683494637719, 0.3018571802249542, 0.28093120585927284, 0.26157467957101754, 0.23541721161391577, 0.22495422443107507, 0.20952131833638504, 0.18754904525241956, 0.1595605545383207, 0.12634057023280146, 0.08553492021972273, 0.05388438399162961, 0.05153021187549045, 0.051007062516348414, 0.05179178655506147, 0.051007062516348414, 0.04969918911849333, 0.04943761443892231, 0.049176039759351295, 0.04943761443892231, 0.04996076379806435, 0.049176039759351295, 0.049176039759351295, 0.04891446507978028, 0.049176039759351295, 0.04865289040020926, 0.04891446507978028, 0.04865289040020926, 0.04760659168192519, 0.04682186764321214, 0.04656029296364112, 0.04577556892492807, 0.04577556892492807, 0.046037143604499085, 0.04577556892492807, 0.04525241956578603, 0.04525241956578603, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PE_PPE_C.gap.json b/pfam_gap_rates/PE_PPE_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01940a4e6241d354ffab780d9f4d5b6c58bd4424
--- /dev/null
+++ b/pfam_gap_rates/PE_PPE_C.gap.json
@@ -0,0 +1 @@
+{"family": "PE_PPE_C", "n_seqs": 170, "length": 103, "gap_rates": [0.34705882352941175, 0.11176470588235295, 0.08235294117647059, 0.08235294117647059, 0.07647058823529412, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.06470588235294118, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.052941176470588235, 0.052941176470588235, 0.058823529411764705, 0.12352941176470589, 0.06470588235294118, 0.052941176470588235, 0.052941176470588235, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.9470588235294117, 0.9411764705882353, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.03529411764705882, 0.03529411764705882, 0.8, 0.8941176470588236, 0.9470588235294117, 0.9235294117647059, 0.8529411764705882, 0.6705882352941176, 0.041176470588235294, 0.052941176470588235, 0.047058823529411764, 0.058823529411764705, 0.047058823529411764, 0.08823529411764706, 0.9470588235294117, 0.058823529411764705, 0.052941176470588235, 0.052941176470588235, 0.047058823529411764, 0.041176470588235294, 0.058823529411764705, 0.052941176470588235, 0.058823529411764705, 0.058823529411764705, 0.08235294117647059, 0.07647058823529412, 0.7352941176470589, 0.8294117647058824, 0.8823529411764706, 0.9411764705882353, 0.9470588235294117, 0.9176470588235294, 0.8411764705882353, 0.788235294117647, 0.6764705882352942, 0.058823529411764705, 0.058823529411764705, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.07058823529411765, 0.8705882352941177, 0.9235294117647059, 0.9470588235294117, 0.9, 0.7941176470588235, 0.5352941176470588, 0.2823529411764706, 0.17647058823529413, 0.15294117647058825, 0.15294117647058825, 0.16470588235294117, 0.19411764705882353, 0.21176470588235294, 0.25882352941176473, 0.3, 0.28823529411764703, 0.3058823529411765, 0.32941176470588235, 0.3352941176470588, 0.3411764705882353, 0.35294117647058826, 0.37058823529411766, 0.6058823529411764], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PFL-like.gap.json b/pfam_gap_rates/PFL-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29ccc90effa5b2b8de25a5632db18eb4b8b735f6
--- /dev/null
+++ b/pfam_gap_rates/PFL-like.gap.json
@@ -0,0 +1 @@
+{"family": "PFL-like", "n_seqs": 1177, "length": 709, "gap_rates": [0.9371282922684792, 0.800339847068819, 0.5531011045029737, 0.3925233644859813, 0.318606627017842, 0.28462192013593884, 0.1988105352591334, 0.5675446049277825, 0.5675446049277825, 0.5378079864061173, 0.17247238742565846, 0.16907391673746813, 0.1631265930331351, 0.16057774001699235, 0.16142735768903993, 0.4868309260832625, 0.20135938827527614, 0.17162276975361088, 0.4324553950722175, 0.18011894647408666, 0.1469838572642311, 0.1427357689039932, 0.1427357689039932, 0.45284621920135937, 0.14443500424808836, 0.12999150382327954, 0.4927782497875956, 0.5004248088360238, 0.5046728971962616, 0.5123194562446899, 0.5182667799490229, 0.5055225148683092, 0.5021240441801189, 0.4995751911639762, 0.48598130841121495, 0.12064570943075616, 0.11979609175870858, 0.11894647408666101, 0.11894647408666101, 0.11894647408666101, 0.11724723874256585, 0.11639762107051826, 0.11639762107051826, 0.11554800339847068, 0.11554800339847068, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PGM_PMM_II.gap.json b/pfam_gap_rates/PGM_PMM_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8f3220baf853c21d4e0f0ce8c0982127b3ad6c1
--- /dev/null
+++ b/pfam_gap_rates/PGM_PMM_II.gap.json
@@ -0,0 +1 @@
+{"family": "PGM_PMM_II", "n_seqs": 5000, "length": 121, "gap_rates": [0.3718, 0.2094, 0.2002, 0.1898, 0.1826, 0.1742, 0.1714, 0.1542, 0.146, 0.1314, 0.1254, 0.808, 0.9112, 0.8486, 0.7462, 0.4584, 0.3502, 0.2866, 0.1328, 0.0976, 0.0792, 0.0216, 0.948, 0.0388, 0.0278, 0.0066, 0.0052, 0.0044, 0.0042, 0.0042, 0.004, 0.0036, 0.0034, 0.0034, 0.0036, 0.0032, 0.0036, 0.0064, 0.0034, 0.0034, 0.0042, 0.0032, 0.0032, 0.0032, 0.0028, 0.0028, 0.9286, 0.0152, 0.0128, 0.013, 0.7502, 0.779, 0.6786, 0.0086, 0.0058, 0.0046, 0.0042, 0.907, 0.0094, 0.0102, 0.0036, 0.0028, 0.0016, 0.0018, 0.0018, 0.0042, 0.0036, 0.0082, 0.0538, 0.8062, 0.9408, 0.942, 0.942, 0.8082, 0.5572, 0.0568, 0.0918, 0.0684, 0.0702, 0.0568, 0.0568, 0.0538, 0.9358, 0.4088, 0.1388, 0.1276, 0.1224, 0.1068, 0.1048, 0.0026, 0.0092, 0.0076, 0.007, 0.004, 0.004, 0.0034, 0.0022, 0.0028, 0.0026, 0.9458, 0.0026, 0.0026, 0.0024, 0.0026, 0.003, 0.0032, 0.0032, 0.0032, 0.0032, 0.0032, 0.004, 0.004, 0.0044, 0.0048, 0.0056, 0.0206, 0.9398, 0.1924, 0.2612, 0.339, 0.3754], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHB_acc.gap.json b/pfam_gap_rates/PHB_acc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3cc78e0580c3bff3e4ce3f24fa9fd06686a9f0fe
--- /dev/null
+++ b/pfam_gap_rates/PHB_acc.gap.json
@@ -0,0 +1 @@
+{"family": "PHB_acc", "n_seqs": 395, "length": 40, "gap_rates": [0.05822784810126582, 0.027848101265822784, 0.007594936708860759, 0.005063291139240506, 0.005063291139240506, 0.005063291139240506, 0.005063291139240506, 0.005063291139240506, 0.002531645569620253, 0.002531645569620253, 0.002531645569620253, 0.005063291139240506, 0.002531645569620253, 0.002531645569620253, 0.002531645569620253, 0.010126582278481013, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.010126582278481013, 0.012658227848101266, 0.020253164556962026, 0.04050632911392405, 0.08607594936708861, 0.3924050632911392], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHB_depo_C.gap.json b/pfam_gap_rates/PHB_depo_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..074d9be6bb26d3235e3cd3db908db8009a0dd7a6
--- /dev/null
+++ b/pfam_gap_rates/PHB_depo_C.gap.json
@@ -0,0 +1 @@
+{"family": "PHB_depo_C", "n_seqs": 303, "length": 202, "gap_rates": [0.052805280528052806, 0.0429042904290429, 0.0429042904290429, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0462046204620462, 0.0462046204620462, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.0429042904290429, 0.0429042904290429, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.033003300330033, 0.036303630363036306, 0.036303630363036306, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.039603960396039604, 0.036303630363036306, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.033003300330033, 0.033003300330033, 0.0297029702970297, 0.0297029702970297, 0.026402640264026403, 0.0297029702970297, 0.026402640264026403, 0.0231023102310231, 0.0231023102310231, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.009900990099009901, 0.006600660066006601, 0.006600660066006601, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.006600660066006601, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.009900990099009901, 0.0165016501650165, 0.009900990099009901, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.006600660066006601, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.0033003300330033004, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.006600660066006601, 0.0033003300330033004, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.013201320132013201, 0.0165016501650165, 0.0231023102310231, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.013201320132013201, 0.0165016501650165, 0.013201320132013201, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.0165016501650165, 0.0165016501650165, 0.019801980198019802, 0.026402640264026403, 0.056105610561056105, 0.13861386138613863, 0.5082508250825083], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PH_TFIIH.gap.json b/pfam_gap_rates/PH_TFIIH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..267bb697b8a6e9f6dd41e86c0e297fb4c9c43708
--- /dev/null
+++ b/pfam_gap_rates/PH_TFIIH.gap.json
@@ -0,0 +1 @@
+{"family": "PH_TFIIH", "n_seqs": 237, "length": 106, "gap_rates": [0.6666666666666666, 0.21940928270042195, 0.16033755274261605, 0.1350210970464135, 0.09282700421940929, 0.02531645569620253, 0.919831223628692, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.029535864978902954, 0.6835443037974683, 0.9367088607594937, 0.9367088607594937, 0.6666666666666666, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.029535864978902954, 0.8143459915611815, 0.15611814345991562, 0.06751054852320675, 0.1518987341772152, 0.45569620253164556, 0.12236286919831224, 0.06751054852320675, 0.029535864978902954, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.016877637130801686, 0.012658227848101266, 0.012658227848101266, 0.008438818565400843, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008438818565400843, 0.004219409282700422, 0.004219409282700422, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5569620253164557, 0.5611814345991561, 0.8776371308016878, 0.9324894514767933, 0.9493670886075949, 0.9493670886075949, 0.9493670886075949, 0.9451476793248945, 0.9156118143459916, 0.8312236286919831, 0.6033755274261603, 0.48945147679324896, 0.6582278481012658, 0.04219409282700422, 0.012658227848101266, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.7257383966244726, 0.8860759493670886, 0.6835443037974683, 0.29957805907172996, 0.18143459915611815, 0.14767932489451477, 0.7510548523206751, 0.13924050632911392, 0.02109704641350211, 0.016877637130801686, 0.016877637130801686, 0.02109704641350211, 0.029535864978902954, 0.03375527426160337, 0.04219409282700422, 0.05907172995780591, 0.08016877637130802, 0.10126582278481013, 0.12236286919831224, 0.350210970464135], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PI-PLC-X.gap.json b/pfam_gap_rates/PI-PLC-X.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2b715708f0fb04744f1fc8630294d178264ac69
--- /dev/null
+++ b/pfam_gap_rates/PI-PLC-X.gap.json
@@ -0,0 +1 @@
+{"family": "PI-PLC-X", "n_seqs": 1495, "length": 228, "gap_rates": [0.4260869565217391, 0.2394648829431438, 0.21270903010033446, 0.19264214046822742, 0.18729096989966554, 0.18193979933110369, 0.1806020066889632, 0.17859531772575252, 0.17525083612040135, 0.17123745819397992, 0.17123745819397992, 0.1665551839464883, 0.1605351170568562, 0.1551839464882943, 0.15384615384615385, 0.14648829431438126, 0.1451505016722408, 0.1431438127090301, 0.14381270903010032, 0.1431438127090301, 0.14715719063545152, 0.14180602006688964, 0.13578595317725753, 0.11906354515050167, 0.09565217391304348, 0.07491638795986622, 0.06086956521739131, 0.05551839464882943, 0.05551839464882943, 0.05618729096989967, 0.05150501672240803, 0.05016722408026756, 0.04882943143812709, 0.04749163879598662, 0.04749163879598662, 0.05016722408026756, 0.049498327759197325, 0.05217391304347826, 0.049498327759197325, 0.048160535117056855, 0.049498327759197325, 0.04882943143812709, 0.05016722408026756, 0.05016722408026756, 0.050836120401337795, 0.050836120401337795, 0.05217391304347826, 0.05150501672240803, 0.9177257525083612, 0.8193979933110368, 0.06956521739130435, 0.07224080267558529, 0.07491638795986622, 0.07290969899665552, 0.06153846153846154, 0.9264214046822743, 0.9123745819397994, 0.19464882943143813, 0.8976588628762542, 0.8989966555183947, 0.9117056856187291, 0.925752508361204, 0.928428093645485, 0.9304347826086956, 0.9324414715719064, 0.934448160535117, 0.934448160535117, 0.9364548494983278, 0.937123745819398, 0.937123745819398, 0.9377926421404682, 0.9384615384615385, 0.939799331103679, 0.939799331103679, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9411371237458194, 0.9418060200668896, 0.9424749163879599, 0.9424749163879599, 0.9424749163879599, 0.9444816053511705, 0.945819397993311, 0.948494983277592, 0.948494983277592, 0.948494983277592, 0.948494983277592, 0.948494983277592, 0.9478260869565217, 0.9451505016722408, 0.9444816053511705, 0.9424749163879599, 0.9424749163879599, 0.9418060200668896, 0.9418060200668896, 0.9411371237458194, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.9404682274247491, 0.939799331103679, 0.939799331103679, 0.9391304347826087, 0.9384615384615385, 0.9377926421404682, 0.937123745819398, 0.9364548494983278, 0.9364548494983278, 0.934448160535117, 0.9331103678929766, 0.9317725752508361, 0.928428093645485, 0.9264214046822743, 0.9217391304347826, 0.9036789297658863, 0.8989966555183947, 0.8936454849498328, 0.05819397993311037, 0.05351170568561873, 0.05217391304347826, 0.049498327759197325, 0.049498327759197325, 0.05016722408026756, 0.048160535117056855, 0.07290969899665552, 0.06354515050167224, 0.06421404682274247, 0.9471571906354515, 0.12508361204013377, 0.07290969899665552, 0.0548494983277592, 0.048160535117056855, 0.046153846153846156, 0.04414715719063545, 0.046153846153846156, 0.046153846153846156, 0.04749163879598662, 0.04749163879598662, 0.048160535117056855, 0.048160535117056855, 0.048160535117056855, 0.04749163879598662, 0.05150501672240803, 0.046822742474916385, 0.048160535117056855, 0.050836120401337795, 0.05150501672240803, 0.04882943143812709, 0.050836120401337795, 0.05284280936454849, 0.05284280936454849, 0.05418060200668896, 0.05418060200668896, 0.05284280936454849, 0.05418060200668896, 0.05418060200668896, 0.0548494983277592, 0.05551839464882943, 0.05819397993311037, 0.05819397993311037, 0.937123745819398, 0.07558528428093646, 0.08361204013377926, 0.08695652173913043, 0.0862876254180602, 0.08428093645484949, 0.07759197324414716, 0.07625418060200669, 0.07224080267558529, 0.06889632107023412, 0.07090301003344482, 0.06889632107023412, 0.06822742474916388, 0.06688963210702341, 0.06822742474916388, 0.06822742474916388, 0.07224080267558529, 0.07558528428093646, 0.0782608695652174, 0.08160535117056857, 0.07959866220735785, 0.07892976588628763, 0.07692307692307693, 0.07625418060200669, 0.07759197324414716, 0.08762541806020067, 0.09096989966555184, 0.2836120401337793, 0.7364548494983277, 0.925752508361204, 0.9431438127090301, 0.757190635451505, 0.65685618729097, 0.5036789297658862, 0.15183946488294314, 0.1277591973244147, 0.12173913043478261, 0.1157190635451505, 0.11705685618729098, 0.11638795986622073, 0.11638795986622073, 0.11638795986622073, 0.11906354515050167, 0.1197324414715719, 0.12307692307692308, 0.12374581939799331, 0.12374581939799331, 0.12441471571906354, 0.12508361204013377, 0.12508361204013377, 0.12976588628762542, 0.1531772575250836, 0.18996655518394648, 0.23210702341137124, 0.6374581939799331], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PIF1.gap.json b/pfam_gap_rates/PIF1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..831cd89a8596b70b2bd05a81071dfa6e760b9f88
--- /dev/null
+++ b/pfam_gap_rates/PIF1.gap.json
@@ -0,0 +1 @@
+{"family": "PIF1", "n_seqs": 3065, "length": 379, "gap_rates": [0.9066884176182708, 0.7298531810766721, 0.7066884176182708, 0.6965742251223491, 0.6871125611745514, 0.6838499184339315, 0.6786296900489397, 0.6760195758564437, 0.6724306688417618, 0.668515497553018, 0.66721044045677, 0.664600326264274, 0.6593800978792822, 0.7768352365415987, 0.768678629690049, 0.7572593800978793, 0.7396411092985318, 0.7210440456769984, 0.6450244698205546, 0.9445350734094616, 0.5347471451876019, 0.5203915171288744, 0.5112561174551387, 0.49755301794453505, 0.4835236541598695, 0.4737357259380098, 0.4737357259380098, 0.4711256117455139, 0.4701468189233279, 0.46851549755301797, 0.466231647634584, 0.46492659053833607, 0.4642740619902121, 0.4626427406199021, 0.4603588907014682, 0.4603588907014682, 0.4603588907014682, 0.4597063621533442, 0.45905383360522023, 0.4597063621533442, 0.4606851549755302, 0.4613376835236542, 0.4629690048939641, 0.466231647634584, 0.467536704730832, 0.46851549755301797, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PIP49_C.gap.json b/pfam_gap_rates/PIP49_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b91376d89412603f04a91d1a16003ae3d99cb1f
--- /dev/null
+++ b/pfam_gap_rates/PIP49_C.gap.json
@@ -0,0 +1 @@
+{"family": "PIP49_C", "n_seqs": 245, "length": 238, "gap_rates": [0.42448979591836733, 0.3224489795918367, 0.31020408163265306, 0.2897959183673469, 0.2897959183673469, 0.2816326530612245, 0.2693877551020408, 0.24897959183673468, 0.22857142857142856, 0.22040816326530613, 0.2163265306122449, 0.20408163265306123, 0.18775510204081633, 0.17551020408163265, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.21224489795918366, 0.17551020408163265, 0.7224489795918367, 0.6530612244897959, 0.15510204081632653, 0.1469387755102041, 0.14285714285714285, 0.13877551020408163, 0.13877551020408163, 0.13877551020408163, 0.13877551020408163, 0.13877551020408163, 0.14285714285714285, 0.13877551020408163, 0.13877551020408163, 0.1306122448979592, 0.13877551020408163, 0.1306122448979592, 0.11836734693877551, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11020408163265306, 0.3020408163265306, 0.4, 0.3183673469387755, 0.2938775510204082, 0.4, 0.5918367346938775, 0.563265306122449, 0.6653061224489796, 0.6979591836734694, 0.7346938775510204, 0.7551020408163265, 0.7795918367346939, 0.8163265306122449, 0.8244897959183674, 0.8163265306122449, 0.8, 0.7755102040816326, 0.7510204081632653, 0.7183673469387755, 0.6816326530612244, 0.6530612244897959, 0.5061224489795918, 0.49795918367346936, 0.3306122448979592, 0.33877551020408164, 0.30612244897959184, 0.18775510204081633, 0.18775510204081633, 0.12653061224489795, 0.10204081632653061, 0.08571428571428572, 0.02040816326530612, 0.02040816326530612, 0.0163265306122449, 0.0163265306122449, 0.012244897959183673, 0.012244897959183673, 0.012244897959183673, 0.012244897959183673, 0.0163265306122449, 0.012244897959183673, 0.012244897959183673, 0.012244897959183673, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.012244897959183673, 0.012244897959183673, 0.012244897959183673, 0.00816326530612245, 0.00816326530612245, 0.012244897959183673, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.0163265306122449, 0.00816326530612245, 0.6775510204081633, 0.00816326530612245, 0.012244897959183673, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.8734693877551021, 0.02857142857142857, 0.036734693877551024, 0.19183673469387755, 0.02857142857142857, 0.8857142857142857, 0.8693877551020408, 0.0326530612244898, 0.036734693877551024, 0.04081632653061224, 0.044897959183673466, 0.044897959183673466, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.044897959183673466, 0.04897959183673469, 0.04897959183673469, 0.04897959183673469, 0.053061224489795916, 0.0653061224489796, 0.37551020408163266, 0.34285714285714286, 0.22040816326530613, 0.2163265306122449, 0.20816326530612245, 0.2979591836734694, 0.2163265306122449, 0.8693877551020408, 0.22448979591836735, 0.09387755102040816, 0.08571428571428572, 0.08571428571428572, 0.08163265306122448, 0.08571428571428572, 0.8489795918367347, 0.8530612244897959, 0.8571428571428571, 0.889795918367347, 0.8734693877551021, 0.8530612244897959, 0.8489795918367347, 0.8367346938775511, 0.08979591836734693, 0.08979591836734693, 0.1836734693877551, 0.17551020408163265, 0.10204081632653061, 0.6408163265306123, 0.10612244897959183, 0.10612244897959183, 0.10612244897959183, 0.11020408163265306, 0.10612244897959183, 0.9469387755102041, 0.9142857142857143, 0.10204081632653061, 0.10204081632653061, 0.11428571428571428, 0.46938775510204084, 0.32653061224489793, 0.10612244897959183, 0.10612244897959183, 0.10612244897959183, 0.10612244897959183, 0.10612244897959183, 0.10612244897959183, 0.11020408163265306, 0.11020408163265306, 0.18775510204081633, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11836734693877551, 0.12653061224489795, 0.1306122448979592, 0.1306122448979592, 0.1306122448979592, 0.1306122448979592, 0.1306122448979592, 0.14285714285714285, 0.1469387755102041, 0.14285714285714285, 0.6979591836734694, 0.710204081632653, 0.7673469387755102, 0.7959183673469388, 0.8408163265306122, 0.8285714285714286, 0.7755102040816326, 0.7591836734693878, 0.7061224489795919, 0.6653061224489796, 0.1469387755102041, 0.15918367346938775, 0.16326530612244897, 0.15918367346938775, 0.8653061224489796, 0.9346938775510204, 0.9469387755102041, 0.9469387755102041, 0.9306122448979591, 0.6979591836734694, 0.15918367346938775, 0.1673469387755102, 0.17551020408163265, 0.17551020408163265, 0.17551020408163265, 0.17142857142857143, 0.17551020408163265, 0.8734693877551021, 0.8693877551020408, 0.17551020408163265, 0.18775510204081633, 0.19591836734693877, 0.22040816326530613, 0.24897959183673468, 0.2979591836734694, 0.363265306122449, 0.3836734693877551, 0.4122448979591837, 0.4857142857142857, 0.7755102040816326], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PKK.gap.json b/pfam_gap_rates/PKK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..975baf2b91d7890602f2242dd21a9cea924a699b
--- /dev/null
+++ b/pfam_gap_rates/PKK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PNTB_4TM.gap.json b/pfam_gap_rates/PNTB_4TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95c7beab468736668235212475ceedcd97422047
--- /dev/null
+++ b/pfam_gap_rates/PNTB_4TM.gap.json
@@ -0,0 +1 @@
+{"family": "PNTB_4TM", "n_seqs": 967, "length": 92, "gap_rates": [0.7290589451913133, 0.08583247156153051, 0.01861427094105481, 0.017580144777662874, 0.016546018614270942, 0.015511892450879007, 0.015511892450879007, 0.014477766287487074, 0.014477766287487074, 0.01344364012409514, 0.01344364012409514, 0.01344364012409514, 0.012409513960703205, 0.012409513960703205, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.008273009307135471, 0.007238883143743537, 0.0062047569803516025, 0.0062047569803516025, 0.007238883143743537, 0.005170630816959669, 0.005170630816959669, 0.0062047569803516025, 0.009307135470527405, 0.010341261633919338, 0.009307135470527405, 0.009307135470527405, 0.009307135470527405, 0.009307135470527405, 0.009307135470527405, 0.009307135470527405, 0.009307135470527405, 0.009307135470527405, 0.009307135470527405, 0.009307135470527405, 0.03929679420889348, 0.6153050672182007, 0.8707342295760083, 0.921406411582213, 0.9441571871768356, 0.9338159255429163, 0.8976215098241985, 0.6525336091003102, 0.2481902792140641, 0.017580144777662874, 0.011375387797311272, 0.01861427094105481, 0.01861427094105481, 0.017580144777662874, 0.012409513960703205, 0.012409513960703205, 0.010341261633919338, 0.010341261633919338, 0.010341261633919338, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.011375387797311272, 0.012409513960703205, 0.012409513960703205, 0.010341261633919338, 0.010341261633919338, 0.010341261633919338, 0.010341261633919338, 0.010341261633919338, 0.010341261633919338, 0.012409513960703205, 0.012409513960703205, 0.012409513960703205, 0.01344364012409514, 0.01344364012409514, 0.01344364012409514, 0.015511892450879007, 0.015511892450879007, 0.016546018614270942, 0.016546018614270942, 0.016546018614270942, 0.01861427094105481, 0.02481902792140641, 0.19027921406411583], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PORR.gap.json b/pfam_gap_rates/PORR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c4ad1bc2c98c47d159fcbe80a31f8d95b4c57cf
--- /dev/null
+++ b/pfam_gap_rates/PORR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/POT1.gap.json b/pfam_gap_rates/POT1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad01c3c1b78d5984b4cb7cc28558c63deb0ab2eb
--- /dev/null
+++ b/pfam_gap_rates/POT1.gap.json
@@ -0,0 +1 @@
+{"family": "POT1", "n_seqs": 256, "length": 170, "gap_rates": [0.7578125, 0.6796875, 0.6015625, 0.56640625, 0.5390625, 0.5078125, 0.4921875, 0.625, 0.94921875, 0.71875, 0.36328125, 0.30078125, 0.25, 0.22265625, 0.1796875, 0.15625, 0.14453125, 0.14453125, 0.14453125, 0.13671875, 0.12890625, 0.12890625, 0.12890625, 0.12890625, 0.125, 0.12109375, 0.125, 0.1328125, 0.11328125, 0.06640625, 0.77734375, 0.90234375, 0.72265625, 0.07421875, 0.0546875, 0.04296875, 0.0390625, 0.046875, 0.04296875, 0.03515625, 0.03515625, 0.03125, 0.03125, 0.03125, 0.03125, 0.02734375, 0.02734375, 0.02734375, 0.01953125, 0.875, 0.89453125, 0.9140625, 0.9453125, 0.9296875, 0.8984375, 0.8828125, 0.828125, 0.78515625, 0.72265625, 0.55859375, 0.40234375, 0.21484375, 0.1484375, 0.03515625, 0.01953125, 0.01953125, 0.015625, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.015625, 0.015625, 0.015625, 0.015625, 0.12890625, 0.01953125, 0.04296875, 0.02734375, 0.015625, 0.015625, 0.03125, 0.53515625, 0.01953125, 0.01953125, 0.01953125, 0.015625, 0.01953125, 0.01953125, 0.01953125, 0.015625, 0.015625, 0.01953125, 0.0234375, 0.01953125, 0.0234375, 0.0234375, 0.03125, 0.04296875, 0.04296875, 0.0546875, 0.1171875, 0.109375, 0.12109375, 0.1015625, 0.09765625, 0.09375, 0.09375, 0.09765625, 0.109375, 0.109375, 0.11328125, 0.421875, 0.6171875, 0.8984375, 0.9453125, 0.9375, 0.875, 0.1484375, 0.13671875, 0.13671875, 0.15625, 0.16796875, 0.17578125, 0.18359375, 0.28125, 0.28515625, 0.74609375, 0.796875, 0.76171875, 0.9140625, 0.91796875, 0.9296875, 0.9453125, 0.94921875, 0.94921875, 0.93359375, 0.92578125, 0.9140625, 0.9140625, 0.39453125, 0.3515625, 0.32421875, 0.3046875, 0.30078125, 0.30859375, 0.3203125, 0.31640625, 0.31640625, 0.47265625, 0.33203125, 0.328125, 0.33984375, 0.33203125, 0.3203125, 0.3203125, 0.3203125, 0.3203125, 0.3203125, 0.328125, 0.328125, 0.3359375, 0.3515625, 0.35546875, 0.359375, 0.3828125, 0.39453125, 0.42578125, 0.5859375, 0.921875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/POTRA.gap.json b/pfam_gap_rates/POTRA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c1d8a559daadfef3324847361c8517db08246d7
--- /dev/null
+++ b/pfam_gap_rates/POTRA.gap.json
@@ -0,0 +1 @@
+{"family": "POTRA", "n_seqs": 5000, "length": 97, "gap_rates": [0.6452, 0.2534, 0.119, 0.0918, 0.0718, 0.058, 0.0536, 0.0484, 0.0464, 0.0446, 0.0464, 0.0732, 0.0272, 0.0218, 0.0188, 0.0164, 0.013, 0.0108, 0.0094, 0.0082, 0.0068, 0.0062, 0.0054, 0.9222, 0.9248, 0.9164, 0.009, 0.0094, 0.0044, 0.0034, 0.0024, 0.831, 0.8322, 0.8448, 0.8522, 0.8738, 0.8492, 0.8334, 0.8318, 0.8302, 0.0036, 0.0014, 0.0014, 0.0008, 0.002, 0.0008, 0.0008, 0.0006, 0.0006, 0.0016, 0.0016, 0.0016, 0.001, 0.3806, 0.379, 0.3792, 0.379, 0.002, 0.0018, 0.0018, 0.0024, 0.0026, 0.003, 0.003, 0.0042, 0.0054, 0.349, 0.0118, 0.0182, 0.679, 0.8212, 0.5734, 0.0202, 0.0466, 0.0808, 0.0808, 0.9016, 0.7792, 0.6562, 0.5972, 0.4734, 0.0816, 0.053, 0.0502, 0.0664, 0.0884, 0.2232, 0.2106, 0.1796, 0.0456, 0.0478, 0.0522, 0.0622, 0.0742, 0.0976, 0.1424, 0.3526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/POTRA_1.gap.json b/pfam_gap_rates/POTRA_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4a63a75789e25947ca24b50e2a424ca4502c047
--- /dev/null
+++ b/pfam_gap_rates/POTRA_1.gap.json
@@ -0,0 +1 @@
+{"family": "POTRA_1", "n_seqs": 1534, "length": 74, "gap_rates": [0.6127770534550195, 0.29986962190352023, 0.16297262059973924, 0.1166883963494133, 0.09778357235984354, 0.09061277705345502, 0.07692307692307693, 0.07431551499348109, 0.06779661016949153, 0.06649282920469361, 0.8063885267275098, 0.05736636245110821, 0.050195567144719684, 0.046284224250325946, 0.039765319426336376, 0.037157757496740544, 0.030638852672750978, 0.029335071707953065, 0.025423728813559324, 0.02151238591916558, 0.018904823989569754, 0.017601043024771838, 0.022816166883963495, 0.01955671447196871, 0.01694915254237288, 0.01108213820078227, 0.009126466753585397, 0.013689700130378096, 0.8807040417209909, 0.00651890482398957, 0.011734028683181226, 0.001955671447196871, 0.001955671447196871, 0.001303780964797914, 0.9471968709256845, 0.9439374185136897, 0.003259452411994785, 0.002607561929595828, 0.001303780964797914, 0.001303780964797914, 0.001303780964797914, 0.001303780964797914, 0.002607561929595828, 0.002607561929595828, 0.003911342894393742, 0.001955671447196871, 0.001303780964797914, 0.005867014341590613, 0.003259452411994785, 0.8050847457627118, 0.001303780964797914, 0.001303780964797914, 0.01955671447196871, 0.001955671447196871, 0.001955671447196871, 0.002607561929595828, 0.002607561929595828, 0.001955671447196871, 0.001955671447196871, 0.001955671447196871, 0.0045632333767926985, 0.0045632333767926985, 0.005215123859191656, 0.007822685788787484, 0.007170795306388526, 0.00651890482398957, 0.007170795306388526, 0.009126466753585397, 0.011734028683181226, 0.016297262059973925, 0.026727509778357236, 0.044980443285528034, 0.09908735332464146, 0.2953063885267275], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PQQ_2.gap.json b/pfam_gap_rates/PQQ_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2514cb5da558b165cd8805617ca93d01a92d8a60
--- /dev/null
+++ b/pfam_gap_rates/PQQ_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PRA-CH.gap.json b/pfam_gap_rates/PRA-CH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61ba8e6085503c247fe7f46aa372ccd661670554
--- /dev/null
+++ b/pfam_gap_rates/PRA-CH.gap.json
@@ -0,0 +1 @@
+{"family": "PRA-CH", "n_seqs": 1771, "length": 75, "gap_rates": [0.163184641445511, 0.01693958215697346, 0.009034443817052512, 0.00846979107848673, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.00564652738565782, 0.004517221908526256, 0.004517221908526256, 0.004517221908526256, 0.004517221908526256, 0.004517221908526256, 0.004517221908526256, 0.004517221908526256, 0.004517221908526256, 0.004517221908526256, 0.004517221908526256, 0.005081874647092038, 0.005081874647092038, 0.005081874647092038, 0.06945228684359118, 0.005081874647092038, 0.004517221908526256, 0.004517221908526256, 0.004517221908526256, 0.005081874647092038, 0.005081874647092038, 0.005081874647092038, 0.005081874647092038, 0.005081874647092038, 0.004517221908526256, 0.004517221908526256, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.0033879164313946925, 0.002258610954263128, 0.0033879164313946925, 0.00282326369282891, 0.0033879164313946925, 0.0033879164313946925, 0.0033879164313946925, 0.0033879164313946925, 0.0033879164313946925, 0.0033879164313946925, 0.004517221908526256, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.004517221908526256, 0.7639751552795031, 0.00564652738565782, 0.00564652738565782, 0.00564652738565782, 0.006211180124223602, 0.006211180124223602, 0.006775832862789385, 0.006775832862789385, 0.006775832862789385, 0.007905138339920948, 0.009034443817052512, 0.010163749294184076, 0.35177865612648224], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRCC.gap.json b/pfam_gap_rates/PRCC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8b7f3c1a3f2960670c95aa6dc4b723036a1045f
--- /dev/null
+++ b/pfam_gap_rates/PRCC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PRELI.gap.json b/pfam_gap_rates/PRELI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bf33d2c99dd75f89f2867aa72f4d789f6880f4d
--- /dev/null
+++ b/pfam_gap_rates/PRELI.gap.json
@@ -0,0 +1 @@
+{"family": "PRELI", "n_seqs": 691, "length": 174, "gap_rates": [0.5021707670043415, 0.3314037626628075, 0.19681620839363242, 0.16208393632416787, 0.14037626628075253, 0.12445730824891461, 0.12011577424023155, 0.10998552821997105, 0.10998552821997105, 0.10709117221418235, 0.10564399421128799, 0.10274963820549927, 0.8726483357452967, 0.8726483357452967, 0.10274963820549927, 0.8625180897250362, 0.09985528219971057, 0.09696092619392185, 0.09261939218523878, 0.08683068017366136, 0.08683068017366136, 0.08827785817655572, 0.09117221418234443, 0.085383502170767, 0.085383502170767, 0.08827785817655572, 0.08827785817655572, 0.08683068017366136, 0.08393632416787265, 0.08393632416787265, 0.085383502170767, 0.08683068017366136, 0.085383502170767, 0.085383502170767, 0.6497829232995659, 0.2199710564399421, 0.085383502170767, 0.08683068017366136, 0.8885672937771346, 0.085383502170767, 0.08393632416787265, 0.08393632416787265, 0.0824891461649783, 0.0824891461649783, 0.0824891461649783, 0.0824891461649783, 0.07814761215629522, 0.07959479015918958, 0.08972503617945007, 0.08972503617945007, 0.9261939218523878, 0.08393632416787265, 0.07959479015918958, 0.07959479015918958, 0.07959479015918958, 0.07814761215629522, 0.07814761215629522, 0.07525325615050651, 0.0723589001447178, 0.9319826338639653, 0.08104196816208394, 0.0824891461649783, 0.07959479015918958, 0.2821997105643994, 0.8639652677279306, 0.9044862518089725, 0.9160636758321273, 0.9160636758321273, 0.9160636758321273, 0.9044862518089725, 0.8277858176555717, 0.1085383502170767, 0.10564399421128799, 0.21273516642547033, 0.9334298118668596, 0.07814761215629522, 0.07670043415340087, 0.07525325615050651, 0.07091172214182344, 0.0694645441389291, 0.06657018813314038, 0.06657018813314038, 0.06657018813314038, 0.06657018813314038, 0.06801736613603473, 0.06801736613603473, 0.0723589001447178, 0.07380607814761216, 0.07091172214182344, 0.0694645441389291, 0.06512301013024602, 0.06512301013024602, 0.06657018813314038, 0.06657018813314038, 0.06657018813314038, 0.06657018813314038, 0.06512301013024602, 0.06367583212735166, 0.06367583212735166, 0.06512301013024602, 0.06512301013024602, 0.06512301013024602, 0.06512301013024602, 0.0694645441389291, 0.07091172214182344, 0.07091172214182344, 0.0723589001447178, 0.07525325615050651, 0.07525325615050651, 0.0723589001447178, 0.0723589001447178, 0.0723589001447178, 0.0694645441389291, 0.07959479015918958, 0.09406657018813314, 0.1085383502170767, 0.12735166425470332, 0.24312590448625182, 0.22431259044862517, 0.8379160636758322, 0.1447178002894356, 0.1476121562952243, 0.1389290882778582, 0.13603473227206947, 0.13603473227206947, 0.1389290882778582, 0.1389290882778582, 0.14037626628075253, 0.1389290882778582, 0.1389290882778582, 0.14327062228654125, 0.17800289435600578, 0.9131693198263386, 0.8147612156295224, 0.15050651230101303, 0.36468885672937773, 0.33285094066570187, 0.4804630969609262, 0.3053545586107091, 0.1837916063675832, 0.17945007235890015, 0.1736613603473227, 0.17945007235890015, 0.1808972503617945, 0.18668596237337193, 0.1837916063675832, 0.18234442836468887, 0.17945007235890015, 0.17655571635311143, 0.17945007235890015, 0.17945007235890015, 0.17945007235890015, 0.1808972503617945, 0.18234442836468887, 0.1837916063675832, 0.18668596237337193, 0.18668596237337193, 0.18958031837916064, 0.191027496382055, 0.191027496382055, 0.2011577424023155, 0.2040520984081042, 0.20839363241678727, 0.21273516642547033, 0.2170767004341534, 0.22431259044862517, 0.23154848046309695, 0.23589001447178004, 0.24167872648335745, 0.2503617945007236, 0.2691751085383502, 0.4370477568740955, 0.5774240231548481, 0.7206946454413893], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRP8_domainIV.gap.json b/pfam_gap_rates/PRP8_domainIV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb4927ab66c48d168085658a4c86ae447759a58a
--- /dev/null
+++ b/pfam_gap_rates/PRP8_domainIV.gap.json
@@ -0,0 +1 @@
+{"family": "PRP8_domainIV", "n_seqs": 354, "length": 230, "gap_rates": [0.288135593220339, 0.2711864406779661, 0.0903954802259887, 0.0903954802259887, 0.08757062146892655, 0.08757062146892655, 0.0847457627118644, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07627118644067797, 0.07627118644067797, 0.07627118644067797, 0.07627118644067797, 0.07062146892655367, 0.07062146892655367, 0.07344632768361582, 0.07062146892655367, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.07062146892655367, 0.07344632768361582, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06779661016949153, 0.06497175141242938, 0.06497175141242938, 0.062146892655367235, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.062146892655367235, 0.06497175141242938, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06497175141242938, 0.062146892655367235, 0.062146892655367235, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06497175141242938, 0.06779661016949153, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07062146892655367, 0.07062146892655367, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.07344632768361582, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07062146892655367, 0.06497175141242938, 0.062146892655367235, 0.062146892655367235, 0.059322033898305086, 0.059322033898305086, 0.059322033898305086, 0.059322033898305086, 0.05649717514124294, 0.059322033898305086, 0.059322033898305086, 0.062146892655367235, 0.062146892655367235, 0.06497175141242938, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.06497175141242938, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.05367231638418079, 0.05367231638418079, 0.05367231638418079, 0.05367231638418079, 0.05367231638418079, 0.05649717514124294, 0.05649717514124294, 0.05649717514124294, 0.05649717514124294, 0.05649717514124294, 0.05649717514124294, 0.05367231638418079, 0.05084745762711865, 0.05649717514124294, 0.05367231638418079, 0.05367231638418079, 0.05367231638418079, 0.05367231638418079, 0.05649717514124294, 0.059322033898305086, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.06779661016949153, 0.06497175141242938, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.07344632768361582, 0.07062146892655367, 0.07062146892655367, 0.07344632768361582, 0.07062146892655367, 0.07062146892655367, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07062146892655367, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07627118644067797, 0.07627118644067797, 0.0847457627118644, 0.0847457627118644, 0.08192090395480225, 0.08192090395480225, 0.08192090395480225, 0.08192090395480225, 0.08192090395480225, 0.0847457627118644, 0.16666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRiA4_ORF3.gap.json b/pfam_gap_rates/PRiA4_ORF3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b07b7e03aa7f3f4e897f343879aefd091132f5ac
--- /dev/null
+++ b/pfam_gap_rates/PRiA4_ORF3.gap.json
@@ -0,0 +1 @@
+{"family": "PRiA4_ORF3", "n_seqs": 569, "length": 216, "gap_rates": [0.9384885764499121, 0.523725834797891, 0.3866432337434095, 0.37082601054481545, 0.3585237258347979, 0.3462214411247803, 0.3427065026362039, 0.3409490333919156, 0.3163444639718805, 0.30404217926186294, 0.29876977152899825, 0.2671353251318102, 0.2741652021089631, 0.20035149384885764, 0.16520210896309315, 0.15114235500878734, 0.1282952548330404, 0.11775043936731107, 0.10720562390158173, 0.09490333919156414, 0.09490333919156414, 0.09490333919156414, 0.09666080843585237, 0.0843585237258348, 0.0843585237258348, 0.0843585237258348, 0.08084358523725835, 0.0773286467486819, 0.0773286467486819, 0.07557117750439367, 0.07205623901581722, 0.070298769771529, 0.070298769771529, 0.070298769771529, 0.06854130052724078, 0.06678383128295255, 0.06502636203866433, 0.0632688927943761, 0.056239015817223195, 0.054481546572934976, 0.056239015817223195, 0.054481546572934976, 0.054481546572934976, 0.056239015817223195, 0.05799648506151142, 0.056239015817223195, 0.05799648506151142, 0.05975395430579965, 0.061511423550087874, 0.061511423550087874, 0.05975395430579965, 0.8224956063268892, 0.8418277680140598, 0.875219683655536, 0.8945518453427065, 0.9086115992970123, 0.9173989455184535, 0.9191564147627417, 0.9349736379613357, 0.9384885764499121, 0.9437609841827768, 0.9472759226713533, 0.945518453427065, 0.9384885764499121, 0.9384885764499121, 0.9191564147627417, 0.9173989455184535, 0.9156414762741653, 0.9086115992970123, 0.8840070298769771, 0.8541300527240774, 0.827768014059754, 0.81195079086116, 0.14762741652021089, 0.2126537785588752, 0.20035149384885764, 0.2038664323374341, 0.19859402460456943, 0.19859402460456943, 0.09490333919156414, 0.5166959578207382, 0.6045694200351494, 0.7820738137082601, 0.859402460456942, 0.8998242530755711, 0.9367311072056239, 0.9490333919156415, 0.9384885764499121, 0.929701230228471, 0.8769771528998243, 0.8295254833040422, 0.6608084358523726, 0.5553602811950791, 0.44815465729349735, 0.3181019332161687, 0.26362038664323373, 0.21968365553602812, 0.15114235500878734, 0.12478031634446397, 0.10193321616871705, 0.10017574692442882, 0.08963093145869948, 0.08787346221441125, 0.07908611599297012, 0.07908611599297012, 0.08084358523725835, 0.08084358523725835, 0.08260105448154657, 0.08787346221441125, 0.08084358523725835, 0.07205623901581722, 0.06678383128295255, 0.06502636203866433, 0.061511423550087874, 0.061511423550087874, 0.05975395430579965, 0.056239015817223195, 0.0632688927943761, 0.2548330404217926, 0.08611599297012303, 0.0632688927943761, 0.05975395430579965, 0.054481546572934976, 0.054481546572934976, 0.054481546572934976, 0.054481546572934976, 0.054481546572934976, 0.05272407732864675, 0.05272407732864675, 0.05272407732864675, 0.05799648506151142, 0.061511423550087874, 0.05975395430579965, 0.061511423550087874, 0.05975395430579965, 0.061511423550087874, 0.05975395430579965, 0.05975395430579965, 0.05975395430579965, 0.05975395430579965, 0.061511423550087874, 0.06502636203866433, 0.070298769771529, 0.070298769771529, 0.07205623901581722, 0.07205623901581722, 0.07557117750439367, 0.12126537785588752, 0.1195079086115993, 0.12126537785588752, 0.9420035149384886, 0.2390158172231986, 0.28646748681898065, 0.9015817223198594, 0.8664323374340949, 0.13181019332161686, 0.10896309314586995, 0.1054481546572935, 0.10720562390158173, 0.10896309314586995, 0.11423550087873462, 0.11775043936731107, 0.12126537785588752, 0.1282952548330404, 0.14938488576449913, 0.16695957820738136, 0.17398945518453426, 0.27065026362038663, 0.335676625659051, 0.3585237258347979, 0.3655536028119508, 0.38137082601054484, 0.4200351493848858, 0.4130052724077329, 0.4305799648506151, 0.43409490333919154, 0.4147627416520211, 0.4165202108963093, 0.4147627416520211, 0.4147627416520211, 0.4235500878734622, 0.43936731107205623, 0.44639718804920914, 0.4446397188049209, 0.45166959578207383, 0.45342706502636204, 0.45694200351493847, 0.46221441124780316, 0.5026362038664324, 0.4903339191564148, 0.48857644991212656, 0.4868189806678383, 0.492091388400703, 0.4956063268892794, 0.5008787346221442, 0.4991212653778559, 0.492091388400703, 0.492091388400703, 0.4938488576449912, 0.5043936731107206, 0.5026362038664324, 0.648506151142355, 0.8681898066783831, 0.9173989455184535, 0.8664323374340949, 0.6942003514938488, 0.9279437609841827, 0.5325131810193322, 0.5360281195079086, 0.539543057996485, 0.5483304042179262, 0.5676625659050967, 0.5764499121265377, 0.5869947275922671, 0.6467486818980668, 0.7469244288224957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSD2.gap.json b/pfam_gap_rates/PSD2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1eb7794f0657c1b37889eb7742cb57833eebf09
--- /dev/null
+++ b/pfam_gap_rates/PSD2.gap.json
@@ -0,0 +1 @@
+{"family": "PSD2", "n_seqs": 271, "length": 75, "gap_rates": [0.5645756457564576, 0.3763837638376384, 0.3062730627306273, 0.12915129151291513, 0.025830258302583026, 0.014760147601476014, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.007380073800738007, 0.8228782287822878, 0.3837638376383764, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007380073800738007, 0.01107011070110701, 0.0036900369003690036, 0.0036900369003690036, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0036900369003690036, 0.0, 0.007380073800738007, 0.007380073800738007, 0.02214022140221402, 0.01845018450184502, 0.04059040590405904, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.01107011070110701, 0.02952029520295203, 0.04059040590405904, 0.04428044280442804, 0.06273062730627306, 0.08856088560885608], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSII_BNR.gap.json b/pfam_gap_rates/PSII_BNR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..128fbee1edbc4b535ea6bb8029bca7fa76c83d94
--- /dev/null
+++ b/pfam_gap_rates/PSII_BNR.gap.json
@@ -0,0 +1 @@
+{"family": "PSII_BNR", "n_seqs": 665, "length": 332, "gap_rates": [0.9443609022556391, 0.8781954887218045, 0.8300751879699249, 0.7804511278195488, 0.7112781954887218, 0.6285714285714286, 0.5593984962406015, 0.5533834586466165, 0.5458646616541354, 0.5353383458646617, 0.5067669172932331, 0.4917293233082707, 0.45714285714285713, 0.4105263157894737, 0.37142857142857144, 0.3368421052631579, 0.9368421052631579, 0.9293233082706767, 0.28270676691729324, 0.23909774436090225, 0.21804511278195488, 0.19699248120300752, 0.17894736842105263, 0.16691729323308271, 0.162406015037594, 0.15639097744360902, 0.9157894736842105, 0.8330827067669173, 0.15037593984962405, 0.1443609022556391, 0.13383458646616542, 0.12631578947368421, 0.12330827067669173, 0.11428571428571428, 0.10075187969924812, 0.08270676691729323, 0.07969924812030076, 0.07518796992481203, 0.081203007518797, 0.07218045112781955, 0.06616541353383458, 0.06015037593984962, 0.06015037593984962, 0.06015037593984962, 0.05413533834586466, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PSK_trans_fac.gap.json b/pfam_gap_rates/PSK_trans_fac.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18fe57c6f0636c4bb7ccd0a59dff28de9ba09318
--- /dev/null
+++ b/pfam_gap_rates/PSK_trans_fac.gap.json
@@ -0,0 +1 @@
+{"family": "PSK_trans_fac", "n_seqs": 129, "length": 93, "gap_rates": [0.1937984496124031, 0.15503875968992248, 0.07751937984496124, 0.07751937984496124, 0.07751937984496124, 0.07751937984496124, 0.06201550387596899, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.031007751937984496, 0.031007751937984496, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.937984496124031, 0.015503875968992248, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015503875968992248, 0.05426356589147287, 0.3643410852713178, 0.4186046511627907, 0.7906976744186046, 0.8992248062015504, 0.8449612403100775, 0.5116279069767442, 0.007751937984496124, 0.015503875968992248, 0.023255813953488372, 0.023255813953488372, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.023255813953488372, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.06201550387596899, 0.06976744186046512, 0.07751937984496124, 0.07751937984496124, 0.8294573643410853, 0.9224806201550387, 0.937984496124031, 0.9224806201550387, 0.8527131782945736, 0.7674418604651163, 0.1937984496124031, 0.12403100775193798, 0.11627906976744186, 0.10852713178294573, 0.07751937984496124, 0.10077519379844961, 0.2558139534883721, 0.1937984496124031, 0.09302325581395349, 0.09302325581395349, 0.10852713178294573, 0.09302325581395349, 0.09302325581395349, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.14728682170542637, 0.17829457364341086, 0.24806201550387597, 0.3798449612403101, 0.5038759689922481], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSP.gap.json b/pfam_gap_rates/PSP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f83659935fd9bc2476178dd4002bec85a86b87b
--- /dev/null
+++ b/pfam_gap_rates/PSP.gap.json
@@ -0,0 +1 @@
+{"family": "PSP", "n_seqs": 482, "length": 55, "gap_rates": [0.1825726141078838, 0.05186721991701245, 0.04564315352697095, 0.035269709543568464, 0.03112033195020747, 0.03112033195020747, 0.024896265560165973, 0.014522821576763486, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.01037344398340249, 0.01037344398340249, 0.01037344398340249, 0.01037344398340249, 0.01037344398340249, 0.008298755186721992, 0.008298755186721992, 0.006224066390041493, 0.7676348547717843, 0.7987551867219918, 0.7987551867219918, 0.7780082987551867, 0.7634854771784232, 0.006224066390041493, 0.006224066390041493, 0.006224066390041493, 0.006224066390041493, 0.006224066390041493, 0.006224066390041493, 0.008298755186721992, 0.006224066390041493, 0.004149377593360996, 0.004149377593360996, 0.006224066390041493, 0.946058091286307, 0.006224066390041493, 0.006224066390041493, 0.006224066390041493, 0.006224066390041493, 0.008298755186721992, 0.008298755186721992, 0.8755186721991701, 0.8921161825726142, 0.8195020746887967, 0.024896265560165973, 0.0975103734439834, 0.13900414937759337, 0.16804979253112035, 0.1825726141078838, 0.19294605809128632, 0.2074688796680498, 0.2157676348547718, 0.27385892116182575, 0.4460580912863071], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTS_EIIB.gap.json b/pfam_gap_rates/PTS_EIIB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb43ac277a2054146b397b0952e483394f30999c
--- /dev/null
+++ b/pfam_gap_rates/PTS_EIIB.gap.json
@@ -0,0 +1 @@
+{"family": "PTS_EIIB", "n_seqs": 2246, "length": 34, "gap_rates": [0.7208370436331255, 0.2742653606411398, 0.04674977738201247, 0.016918967052537846, 0.008459483526268923, 0.005342831700801425, 0.004007123775601068, 0.003116651825467498, 0.032056990204808546, 0.0026714158504007124, 0.002226179875333927, 0.002226179875333927, 0.0017809439002671415, 0.0013357079252003562, 0.0013357079252003562, 0.0004452359750667854, 0.0004452359750667854, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0004452359750667854, 0.0008904719501335708, 0.0026714158504007124, 0.007123775601068566, 0.012466607301869992, 0.018699910952804988, 0.0427426536064114, 0.09038290293855744, 0.25066785396260016], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTS_EIIC_2.gap.json b/pfam_gap_rates/PTS_EIIC_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..23a30f59935ae595950aba4dcd8f70ad830e1900
--- /dev/null
+++ b/pfam_gap_rates/PTS_EIIC_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PUA_2.gap.json b/pfam_gap_rates/PUA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13c9d4fb6fd49db3ad579ea73d781d96ea4b74c8
--- /dev/null
+++ b/pfam_gap_rates/PUA_2.gap.json
@@ -0,0 +1 @@
+{"family": "PUA_2", "n_seqs": 864, "length": 179, "gap_rates": [0.7407407407407407, 0.40162037037037035, 0.34953703703703703, 0.33912037037037035, 0.32060185185185186, 0.29398148148148145, 0.8680555555555556, 0.22800925925925927, 0.18287037037037038, 0.16087962962962962, 0.15625, 0.1423611111111111, 0.1423611111111111, 0.1412037037037037, 0.1400462962962963, 0.1388888888888889, 0.1412037037037037, 0.78125, 0.1400462962962963, 0.1423611111111111, 0.1423611111111111, 0.1388888888888889, 0.13425925925925927, 0.1284722222222222, 0.12268518518518519, 0.1400462962962963, 0.1597222222222222, 0.14467592592592593, 0.15625, 0.15046296296296297, 0.11226851851851852, 0.08680555555555555, 0.05787037037037037, 0.056712962962962965, 0.05555555555555555, 0.05092592592592592, 0.04861111111111111, 0.05092592592592592, 0.04976851851851852, 0.04513888888888889, 0.04513888888888889, 0.04398148148148148, 0.04398148148148148, 0.04050925925925926, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.03819444444444445, 0.03935185185185185, 0.037037037037037035, 0.037037037037037035, 0.03587962962962963, 0.03587962962962963, 0.03819444444444445, 0.03009259259259259, 0.03009259259259259, 0.028935185185185185, 0.028935185185185185, 0.028935185185185185, 0.028935185185185185, 0.028935185185185185, 0.027777777777777776, 0.027777777777777776, 0.032407407407407406, 0.03009259259259259, 0.03356481481481482, 0.028935185185185185, 0.03009259259259259, 0.03009259259259259, 0.9421296296296297, 0.8888888888888888, 0.032407407407407406, 0.9386574074074074, 0.9375, 0.028935185185185185, 0.03009259259259259, 0.03009259259259259, 0.028935185185185185, 0.8576388888888888, 0.8020833333333334, 0.02662037037037037, 0.02546296296296296, 0.024305555555555556, 0.024305555555555556, 0.024305555555555556, 0.024305555555555556, 0.056712962962962965, 0.04861111111111111, 0.02546296296296296, 0.02662037037037037, 0.03356481481481482, 0.03587962962962963, 0.04513888888888889, 0.10069444444444445, 0.09953703703703703, 0.09259259259259259, 0.8020833333333334, 0.7951388888888888, 0.04513888888888889, 0.034722222222222224, 0.027777777777777776, 0.023148148148148147, 0.023148148148148147, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.3368055555555556, 0.7453703703703703, 0.02199074074074074, 0.020833333333333332, 0.017361111111111112, 0.9479166666666666, 0.018518518518518517, 0.018518518518518517, 0.017361111111111112, 0.016203703703703703, 0.016203703703703703, 0.015046296296296295, 0.017361111111111112, 0.013888888888888888, 0.019675925925925927, 0.019675925925925927, 0.020833333333333332, 0.024305555555555556, 0.9224537037037037, 0.9224537037037037, 0.9143518518518519, 0.02546296296296296, 0.03009259259259259, 0.028935185185185185, 0.028935185185185185, 0.028935185185185185, 0.028935185185185185, 0.03009259259259259, 0.028935185185185185, 0.028935185185185185, 0.028935185185185185, 0.03009259259259259, 0.03009259259259259, 0.03009259259259259, 0.03009259259259259, 0.056712962962962965, 0.0763888888888889, 0.9490740740740741, 0.9490740740740741, 0.9490740740740741, 0.9490740740740741, 0.032407407407407406, 0.03356481481481482, 0.03125, 0.03125, 0.034722222222222224, 0.032407407407407406, 0.034722222222222224, 0.041666666666666664, 0.5949074074074074, 0.041666666666666664, 0.041666666666666664, 0.04282407407407408, 0.04282407407407408, 0.04282407407407408, 0.04282407407407408, 0.04282407407407408, 0.04282407407407408, 0.04398148148148148, 0.04398148148148148, 0.05092592592592592, 0.061342592592592594, 0.06712962962962964, 0.08564814814814815, 0.18171296296296297, 0.8912037037037037], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PUF.gap.json b/pfam_gap_rates/PUF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c27e514dbc58ddbda14757e7d427aeb0ebfb585c
--- /dev/null
+++ b/pfam_gap_rates/PUF.gap.json
@@ -0,0 +1 @@
+{"family": "PUF", "n_seqs": 5000, "length": 36, "gap_rates": [0.8986, 0.524, 0.4018, 0.2794, 0.2084, 0.1326, 0.101, 0.0682, 0.0124, 0.0048, 0.0022, 0.0002, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006, 0.0012, 0.003, 0.0088, 0.0738, 0.9068, 0.0902, 0.105, 0.1412, 0.175, 0.2082, 0.269, 0.3726, 0.4638, 0.5386, 0.7594], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PX.gap.json b/pfam_gap_rates/PX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6090209faabb58584e92fd4c9ce6c3bf0b1a88dc
--- /dev/null
+++ b/pfam_gap_rates/PX.gap.json
@@ -0,0 +1 @@
+{"family": "PX", "n_seqs": 5000, "length": 160, "gap_rates": [0.9248, 0.8714, 0.8282, 0.759, 0.6788, 0.6342, 0.5942, 0.5722, 0.5478, 0.5428, 0.5142, 0.5286, 0.4804, 0.9134, 0.7914, 0.3782, 0.2948, 0.2512, 0.2166, 0.1876, 0.1676, 0.1492, 0.1336, 0.1238, 0.1112, 0.1066, 0.101, 0.0984, 0.0968, 0.0964, 0.1136, 0.1704, 0.609, 0.7, 0.9084, 0.9406, 0.7422, 0.6686, 0.5246, 0.3128, 0.1666, 0.078, 0.0494, 0.0262, 0.0236, 0.0216, 0.0202, 0.0192, 0.0186, 0.0182, 0.0176, 0.0174, 0.017, 0.017, 0.0166, 0.0162, 0.0184, 0.0188, 0.0172, 0.017, 0.0162, 0.0204, 0.0164, 0.017, 0.7138, 0.8278, 0.867, 0.8882, 0.938, 0.9488, 0.9436, 0.9054, 0.8806, 0.853, 0.8, 0.6718, 0.1206, 0.061, 0.0368, 0.0216, 0.053, 0.018, 0.0158, 0.0152, 0.0144, 0.0158, 0.0162, 0.0368, 0.0382, 0.057, 0.1932, 0.6724, 0.75, 0.8086, 0.823, 0.8866, 0.9018, 0.9094, 0.9162, 0.9208, 0.9248, 0.9286, 0.9306, 0.932, 0.933, 0.9326, 0.9314, 0.93, 0.9274, 0.9222, 0.9194, 0.914, 0.9048, 0.8962, 0.8628, 0.8144, 0.773, 0.7266, 0.6136, 0.4572, 0.1478, 0.0854, 0.0346, 0.0312, 0.0292, 0.029, 0.0268, 0.0256, 0.0256, 0.0256, 0.026, 0.0266, 0.0272, 0.0272, 0.029, 0.03, 0.0302, 0.0318, 0.0388, 0.0398, 0.048, 0.0614, 0.0842, 0.0998, 0.117, 0.1204, 0.1284, 0.1348, 0.8414, 0.1522, 0.1512, 0.154, 0.1552, 0.1618, 0.1684, 0.1744, 0.1908, 0.2862, 0.509, 0.929], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PXB.gap.json b/pfam_gap_rates/PXB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a3a6cd33574531703bdb8a1b4486231ae8c86ad
--- /dev/null
+++ b/pfam_gap_rates/PXB.gap.json
@@ -0,0 +1 @@
+{"family": "PXB", "n_seqs": 208, "length": 201, "gap_rates": [0.8028846153846154, 0.34134615384615385, 0.09615384615384616, 0.07692307692307693, 0.07692307692307693, 0.0673076923076923, 0.07211538461538461, 0.052884615384615384, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.028846153846153848, 0.028846153846153848, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.8509615384615384, 0.8509615384615384, 0.8846153846153846, 0.8509615384615384, 0.8173076923076923, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.03365384615384615, 0.038461538461538464, 0.04326923076923077, 0.057692307692307696, 0.057692307692307696, 0.0625, 0.038461538461538464, 0.038461538461538464, 0.04326923076923077, 0.0673076923076923, 0.7740384615384616, 0.7740384615384616, 0.7788461538461539, 0.7836538461538461, 0.7980769230769231, 0.8028846153846154, 0.8125, 0.8173076923076923, 0.8221153846153846, 0.8461538461538461, 0.8557692307692307, 0.8653846153846154, 0.8798076923076923, 0.8894230769230769, 0.8942307692307693, 0.9086538461538461, 0.9134615384615384, 0.9134615384615384, 0.9230769230769231, 0.9326923076923077, 0.9326923076923077, 0.9326923076923077, 0.9423076923076923, 0.9471153846153846, 0.9423076923076923, 0.9375, 0.9326923076923077, 0.9326923076923077, 0.9278846153846154, 0.9182692307692307, 0.9134615384615384, 0.9086538461538461, 0.8990384615384616, 0.8942307692307693, 0.8846153846153846, 0.8798076923076923, 0.8653846153846154, 0.8557692307692307, 0.8365384615384616, 0.8221153846153846, 0.8125, 0.8028846153846154, 0.7980769230769231, 0.7932692307692307, 0.7788461538461539, 0.7788461538461539, 0.7740384615384616, 0.7740384615384616, 0.0673076923076923, 0.33653846153846156, 0.41346153846153844, 0.9471153846153846, 0.8076923076923077, 0.7788461538461539, 0.7644230769230769, 0.7259615384615384, 0.47596153846153844, 0.3125, 0.8269230769230769, 0.8942307692307693, 0.9278846153846154, 0.9423076923076923, 0.9038461538461539, 0.875, 0.7980769230769231, 0.08173076923076923, 0.038461538461538464, 0.02403846153846154, 0.03365384615384615, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.8798076923076923, 0.9230769230769231, 0.8846153846153846, 0.5, 0.019230769230769232, 0.02403846153846154, 0.019230769230769232, 0.028846153846153848, 0.03365384615384615, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.10096153846153846, 0.028846153846153848, 0.028846153846153848, 0.02403846153846154, 0.02403846153846154, 0.014423076923076924, 0.019230769230769232, 0.028846153846153848, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.8653846153846154, 0.8894230769230769, 0.9182692307692307, 0.9086538461538461, 0.875, 0.8605769230769231, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.9471153846153846, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.0625, 0.0625, 0.0625, 0.07692307692307693, 0.09134615384615384, 0.11057692307692307, 0.125, 0.2548076923076923, 0.8461538461538461], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PaaB.gap.json b/pfam_gap_rates/PaaB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79d0631ccf7465c0a6a9a6335518cacdcc0390f6
--- /dev/null
+++ b/pfam_gap_rates/PaaB.gap.json
@@ -0,0 +1 @@
+{"family": "PaaB", "n_seqs": 304, "length": 89, "gap_rates": [0.4934210526315789, 0.1875, 0.09868421052631579, 0.023026315789473683, 0.01644736842105263, 0.01644736842105263, 0.01644736842105263, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.006578947368421052, 0.013157894736842105, 0.05263157894736842, 0.029605263157894735, 0.006578947368421052, 0.009868421052631578, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.013157894736842105, 0.013157894736842105, 0.01644736842105263, 0.02631578947368421, 0.029605263157894735, 0.046052631578947366, 0.13157894736842105, 0.09539473684210527, 0.0756578947368421, 0.13157894736842105, 0.08552631578947369, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.08223684210526316, 0.08223684210526316, 0.08223684210526316, 0.08223684210526316, 0.08223684210526316, 0.08223684210526316, 0.08223684210526316, 0.08552631578947369, 0.08552631578947369, 0.08881578947368421, 0.08881578947368421, 0.08881578947368421, 0.09539473684210527, 0.10526315789473684, 0.12171052631578948, 0.18421052631578946, 0.6019736842105263, 0.9243421052631579], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PagL.gap.json b/pfam_gap_rates/PagL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1ba1c90f06ba43219ec1359cffcb848b00feb08
--- /dev/null
+++ b/pfam_gap_rates/PagL.gap.json
@@ -0,0 +1 @@
+{"family": "PagL", "n_seqs": 338, "length": 158, "gap_rates": [0.8579881656804734, 0.8047337278106509, 0.7603550295857988, 0.7218934911242604, 0.6893491124260355, 0.6568047337278107, 0.6301775147928994, 0.6923076923076923, 0.6804733727810651, 0.6538461538461539, 0.7130177514792899, 0.6686390532544378, 0.8372781065088757, 0.6923076923076923, 0.6627218934911243, 0.5769230769230769, 0.5680473372781065, 0.5236686390532544, 0.5236686390532544, 0.6863905325443787, 0.30177514792899407, 0.35798816568047337, 0.3609467455621302, 0.3668639053254438, 0.3905325443786982, 0.41124260355029585, 0.4260355029585799, 0.44970414201183434, 0.47633136094674555, 0.48520710059171596, 0.5088757396449705, 0.5207100591715976, 0.5355029585798816, 0.5710059171597633, 0.5769230769230769, 0.5857988165680473, 0.6124260355029586, 0.6301775147928994, 0.6390532544378699, 0.7218934911242604, 0.7485207100591716, 0.8165680473372781, 0.8520710059171598, 0.8846153846153846, 0.9112426035502958, 0.9349112426035503, 0.9467455621301775, 0.9201183431952663, 0.8964497041420119, 0.863905325443787, 0.8431952662721893, 0.7662721893491125, 0.7485207100591716, 0.6479289940828402, 0.6390532544378699, 0.621301775147929, 0.6005917159763313, 0.5769230769230769, 0.5739644970414202, 0.5414201183431953, 0.5266272189349113, 0.5088757396449705, 0.4970414201183432, 0.47928994082840237, 0.46449704142011833, 0.4349112426035503, 0.41420118343195267, 0.40828402366863903, 0.378698224852071, 0.3609467455621302, 0.35798816568047337, 0.35798816568047337, 0.08284023668639054, 0.07988165680473373, 0.0650887573964497, 0.0621301775147929, 0.05621301775147929, 0.05029585798816568, 0.05029585798816568, 0.05029585798816568, 0.047337278106508875, 0.047337278106508875, 0.04437869822485207, 0.2869822485207101, 0.7692307692307693, 0.34023668639053256, 0.6804733727810651, 0.8846153846153846, 0.9467455621301775, 0.7248520710059172, 0.665680473372781, 0.25443786982248523, 0.1893491124260355, 0.12721893491124261, 0.05325443786982249, 0.03550295857988166, 0.020710059171597635, 0.01775147928994083, 0.01775147928994083, 0.014792899408284023, 0.008875739644970414, 0.008875739644970414, 0.008875739644970414, 0.005917159763313609, 0.05917159763313609, 0.05917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.008875739644970414, 0.008875739644970414, 0.0, 0.0029585798816568047, 0.0029585798816568047, 0.0, 0.0, 0.0, 0.014792899408284023, 0.020710059171597635, 0.038461538461538464, 0.6597633136094675, 0.9408284023668639, 0.9467455621301775, 0.9349112426035503, 0.6420118343195266, 0.3905325443786982, 0.3727810650887574, 0.005917159763313609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008875739644970414, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.008875739644970414, 0.0029585798816568047, 0.0029585798816568047, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.008875739644970414, 0.014792899408284023, 0.023668639053254437, 0.03550295857988166, 0.05029585798816568, 0.0621301775147929, 0.10650887573964497, 0.2485207100591716, 0.7189349112426036], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ParD_antitoxin.gap.json b/pfam_gap_rates/ParD_antitoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48b74e656153d73916f5b0d3d1018a6721c25e23
--- /dev/null
+++ b/pfam_gap_rates/ParD_antitoxin.gap.json
@@ -0,0 +1 @@
+{"family": "ParD_antitoxin", "n_seqs": 442, "length": 86, "gap_rates": [0.7986425339366516, 0.7895927601809954, 0.7647058823529411, 0.7149321266968326, 0.6131221719457014, 0.43665158371040724, 0.11990950226244344, 0.10180995475113122, 0.08597285067873303, 0.083710407239819, 0.07013574660633484, 0.06334841628959276, 0.05429864253393665, 0.03619909502262444, 0.03167420814479638, 0.024886877828054297, 0.02262443438914027, 0.020361990950226245, 0.01809954751131222, 0.013574660633484163, 0.00904977375565611, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.00904977375565611, 0.013574660633484163, 0.013574660633484163, 0.024886877828054297, 0.04524886877828054, 0.03167420814479638, 0.02262443438914027, 0.027149321266968326, 0.03619909502262444, 0.9276018099547512, 0.9298642533936652, 0.9276018099547512, 0.9276018099547512, 0.05203619909502263, 0.9095022624434389, 0.9434389140271493, 0.9049773755656109, 0.07692307692307693, 0.10407239819004525, 0.09502262443438914, 0.11764705882352941, 0.12895927601809956, 0.13574660633484162, 0.1425339366515837, 0.1583710407239819, 0.16515837104072398, 0.16968325791855204, 0.18099547511312217, 0.18552036199095023, 0.23076923076923078, 0.26244343891402716, 0.3009049773755656, 0.332579185520362, 0.33710407239819007, 0.3552036199095023, 0.3755656108597285, 0.5361990950226244, 0.47737556561085975, 0.497737556561086, 0.5384615384615384, 0.5407239819004525, 0.5520361990950227, 0.5723981900452488, 0.6266968325791855, 0.6470588235294118, 0.6719457013574661, 0.6877828054298643, 0.7171945701357466, 0.7760180995475113, 0.8438914027149321, 0.920814479638009], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Paramecium_SA.gap.json b/pfam_gap_rates/Paramecium_SA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eeb0b575e9bf6d52755d948baf6e26be51785977
--- /dev/null
+++ b/pfam_gap_rates/Paramecium_SA.gap.json
@@ -0,0 +1 @@
+{"family": "Paramecium_SA", "n_seqs": 1514, "length": 79, "gap_rates": [0.928005284015852, 0.31109643328929987, 0.1202113606340819, 0.06472919418758256, 0.029722589167767502, 0.016512549537648614, 0.011228533685601057, 0.010568031704095112, 0.010568031704095112, 0.009907529722589167, 0.007926023778071334, 0.008586525759577279, 0.02774108322324967, 0.880449141347424, 0.8533685601056803, 0.00726552179656539, 0.00726552179656539, 0.0066050198150594455, 0.35402906208718626, 0.37912813738441214, 0.9240422721268163, 0.9095112285336856, 0.09379128137384413, 0.010568031704095112, 0.09247027741083223, 0.0019815059445178335, 0.0019815059445178335, 0.001321003963011889, 0.001321003963011889, 0.0006605019815059445, 0.452443857331572, 0.025759577278731835, 0.001321003963011889, 0.001321003963011889, 0.0033025099075297227, 0.002642007926023778, 0.0, 0.8652575957727873, 0.12351387054161163, 0.0033025099075297227, 0.0006605019815059445, 0.001321003963011889, 0.003963011889035667, 0.003963011889035667, 0.004623513870541612, 0.004623513870541612, 0.004623513870541612, 0.1499339498018494, 0.8091149273447821, 0.9385733157199472, 0.8487450462351387, 0.642668428005284, 0.026420079260237782, 0.021796565389696168, 0.016512549537648614, 0.011228533685601057, 0.007926023778071334, 0.010568031704095112, 0.011228533685601057, 0.011889035667107, 0.013870541611624834, 0.21862615587846765, 0.5264200792602378, 0.8652575957727873, 0.9445178335535006, 0.9081902245706737, 0.8262879788639366, 0.34478203434610305, 0.036988110964332896, 0.031704095112285335, 0.036988110964332896, 0.052840158520475564, 0.06935270805812417, 0.09841479524438573, 0.9286657859973579, 0.9332892998678997, 0.8381770145310435, 0.12945838837516513, 0.3857331571994716], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Patatin.gap.json b/pfam_gap_rates/Patatin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ebfc87f4dd01584ddd156dbe7f4d8caf9f035365
--- /dev/null
+++ b/pfam_gap_rates/Patatin.gap.json
@@ -0,0 +1 @@
+{"family": "Patatin", "n_seqs": 5000, "length": 288, "gap_rates": [0.2544, 0.12, 0.0982, 0.0874, 0.08, 0.0778, 0.0764, 0.075, 0.0728, 0.945, 0.071, 0.0708, 0.07, 0.0696, 0.0688, 0.0678, 0.0674, 0.0662, 0.0656, 0.0652, 0.9358, 0.9398, 0.8856, 0.064, 0.721, 0.7652, 0.837, 0.8552, 0.8716, 0.9478, 0.9208, 0.866, 0.8486, 0.828, 0.7358, 0.6478, 0.605, 0.0744, 0.0596, 0.057, 0.0558, 0.0542, 0.0528, 0.0524, 0.051, 0.0502, 0.048, 0.0476, 0.0474, 0.047, 0.0466, 0.0466, 0.047, 0.0466, 0.047, 0.047, 0.0468, 0.1056, 0.0744, 0.0734, 0.0562, 0.0566, 0.0674, 0.911, 0.1918, 0.1174, 0.106, 0.0974, 0.101, 0.226, 0.1792, 0.1254, 0.1124, 0.0988, 0.096, 0.0946, 0.0954, 0.0976, 0.0982, 0.0988, 0.1004, 0.1028, 0.1066, 0.1126, 0.1186, 0.1324, 0.746, 0.7858, 0.8028, 0.8242, 0.8424, 0.8686, 0.8924, 0.9176, 0.9284, 0.9366, 0.9432, 0.9488, 0.9472, 0.9398, 0.932, 0.9232, 0.904, 0.8818, 0.8548, 0.8336, 0.8134, 0.7958, 0.7756, 0.738, 0.7152, 0.6766, 0.6464, 0.614, 0.5884, 0.5496, 0.5076, 0.454, 0.418, 0.366, 0.336, 0.3036, 0.2636, 0.2108, 0.1896, 0.1498, 0.1408, 0.1356, 0.1262, 0.1292, 0.1842, 0.147, 0.123, 0.1186, 0.1156, 0.115, 0.1154, 0.1148, 0.1144, 0.1144, 0.1142, 0.1154, 0.8984, 0.9298, 0.9474, 0.9136, 0.8638, 0.143, 0.1378, 0.9424, 0.9472, 0.9446, 0.9346, 0.124, 0.1396, 0.1292, 0.1268, 0.126, 0.125, 0.1246, 0.1254, 0.1264, 0.1282, 0.1284, 0.1292, 0.133, 0.1374, 0.1384, 0.1422, 0.7214, 0.8146, 0.8686, 0.8986, 0.8856, 0.9146, 0.924, 0.929, 0.934, 0.9402, 0.9436, 0.9482, 0.9454, 0.942, 0.9366, 0.9318, 0.9266, 0.9196, 0.9096, 0.8746, 0.862, 0.8368, 0.8116, 0.7798, 0.7562, 0.7386, 0.7268, 0.7122, 0.6972, 0.6808, 0.662, 0.5432, 0.5026, 0.4764, 0.439, 0.4116, 0.375, 0.3434, 0.3196, 0.3042, 0.2882, 0.1278, 0.1248, 0.121, 0.1204, 0.1208, 0.1192, 0.1192, 0.12, 0.1184, 0.1176, 0.1192, 0.1168, 0.1056, 0.91, 0.9346, 0.944, 0.9246, 0.8886, 0.0972, 0.0962, 0.096, 0.0978, 0.0964, 0.0906, 0.0932, 0.0892, 0.0886, 0.0862, 0.0862, 0.0882, 0.0894, 0.0902, 0.091, 0.0908, 0.092, 0.102, 0.919, 0.9488, 0.8994, 0.1038, 0.1166, 0.117, 0.1174, 0.116, 0.901, 0.9298, 0.938, 0.9188, 0.8902, 0.1388, 0.1604, 0.1362, 0.758, 0.796, 0.8518, 0.8862, 0.917, 0.8758, 0.8318, 0.7816, 0.7384, 0.1302, 0.1108, 0.1118, 0.1126, 0.1188, 0.1214, 0.126, 0.1338, 0.147, 0.1578, 0.1784, 0.1808, 0.2138, 0.2926, 0.418, 0.5456, 0.8864], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pectate_lyase_3.gap.json b/pfam_gap_rates/Pectate_lyase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66d5ae108ec160b6b29a09068a03c63acad75c5b
--- /dev/null
+++ b/pfam_gap_rates/Pectate_lyase_3.gap.json
@@ -0,0 +1 @@
+{"family": "Pectate_lyase_3", "n_seqs": 1440, "length": 275, "gap_rates": [0.6326388888888889, 0.34444444444444444, 0.23055555555555557, 0.16527777777777777, 0.14097222222222222, 0.13055555555555556, 0.10625, 0.09583333333333334, 0.08402777777777778, 0.07361111111111111, 0.06527777777777778, 0.06180555555555556, 0.059027777777777776, 0.05694444444444444, 0.050694444444444445, 0.04652777777777778, 0.041666666666666664, 0.04097222222222222, 0.0375, 0.035416666666666666, 0.027083333333333334, 0.025694444444444443, 0.02638888888888889, 0.025, 0.02638888888888889, 0.6722222222222223, 0.7354166666666667, 0.7590277777777777, 0.7743055555555556, 0.7770833333333333, 0.9409722222222222, 0.9486111111111111, 0.8826388888888889, 0.7756944444444445, 0.76875, 0.7506944444444444, 0.725, 0.44027777777777777, 0.27152777777777776, 0.13472222222222222, 0.09236111111111112, 0.06527777777777778, 0.02361111111111111, 0.021527777777777778, 0.021527777777777778, 0.022222222222222223, 0.021527777777777778, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Pellino.gap.json b/pfam_gap_rates/Pellino.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46a00783ccf99596afeb6b46563cad4d9d6cb351
--- /dev/null
+++ b/pfam_gap_rates/Pellino.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pepsin-I3.gap.json b/pfam_gap_rates/Pepsin-I3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..984e9fba1eae72aca7f26cd8902f3ae0348fdbfe
--- /dev/null
+++ b/pfam_gap_rates/Pepsin-I3.gap.json
@@ -0,0 +1 @@
+{"family": "Pepsin-I3", "n_seqs": 177, "length": 74, "gap_rates": [0.8813559322033898, 0.8587570621468926, 0.8022598870056498, 0.7740112994350282, 0.7175141242937854, 0.6384180790960452, 0.6214689265536724, 0.5988700564971752, 0.5988700564971752, 0.5875706214689266, 0.559322033898305, 0.5536723163841808, 0.5423728813559322, 0.5423728813559322, 0.5084745762711864, 0.4971751412429379, 0.4689265536723164, 0.4519774011299435, 0.4463276836158192, 0.384180790960452, 0.3050847457627119, 0.2033898305084746, 0.1807909604519774, 0.1751412429378531, 0.11299435028248588, 0.03389830508474576, 0.02824858757062147, 0.03389830508474576, 0.022598870056497175, 0.022598870056497175, 0.01694915254237288, 0.011299435028248588, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.011299435028248588, 0.011299435028248588, 0.01694915254237288, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.03954802259887006, 0.062146892655367235, 0.0903954802259887, 0.096045197740113, 0.11864406779661017, 0.13559322033898305, 0.22598870056497175, 0.2598870056497175, 0.2711864406779661, 0.3050847457627119, 0.3615819209039548, 0.3785310734463277, 0.4180790960451977, 0.4858757062146893, 0.6045197740112994, 0.6497175141242938, 0.6610169491525424, 0.711864406779661, 0.7966101694915254, 0.8531073446327684, 0.8983050847457628], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_A24.gap.json b/pfam_gap_rates/Peptidase_A24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd08ed222492944deb14652092ac5d16a4c9609d
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_A24.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_A24", "n_seqs": 2305, "length": 137, "gap_rates": [0.8572668112798265, 0.3436008676789588, 0.16008676789587853, 0.0859002169197397, 0.05813449023861171, 0.04468546637744035, 0.0386117136659436, 0.0334056399132321, 0.02950108459869848, 0.02776572668112798, 0.026464208242950107, 0.025596529284164858, 0.025162689804772233, 0.02386117136659436, 0.02386117136659436, 0.022559652928416486, 0.02212581344902386, 0.01908893709327549, 0.017787418655097614, 0.015618221258134491, 0.015184381778741865, 0.015184381778741865, 0.016052060737527116, 0.016052060737527116, 0.015184381778741865, 0.01388286334056399, 0.014316702819956615, 0.014316702819956615, 0.016919739696312365, 0.016052060737527116, 0.01475054229934924, 0.013449023861171366, 0.01388286334056399, 0.012147505422993492, 0.01648590021691974, 0.04338394793926247, 0.7418655097613883, 0.8303687635574837, 0.8741865509761388, 0.9062906724511931, 0.9414316702819957, 0.928416485900217, 0.8919739696312364, 0.8511930585683297, 0.7809110629067245, 0.7180043383947939, 0.6143167028199567, 0.4928416485900217, 0.19739696312364424, 0.13101952277657267, 0.08806941431670282, 0.03644251626898048, 0.02776572668112798, 0.023427331887201735, 0.01648590021691974, 0.016052060737527116, 0.015618221258134491, 0.01388286334056399, 0.013015184381778741, 0.012581344902386117, 0.012147505422993492, 0.012581344902386117, 0.010845986984815618, 0.01388286334056399, 0.013449023861171366, 0.013015184381778741, 0.012581344902386117, 0.012581344902386117, 0.012147505422993492, 0.013015184381778741, 0.014316702819956615, 0.02125813449023861, 0.37917570498915404, 0.7492407809110629, 0.7665943600867678, 0.7783080260303687, 0.7600867678958785, 0.7271149674620391, 0.2854663774403471, 0.05683297180043384, 0.02950108459869848, 0.93058568329718, 0.9392624728850325, 0.944468546637744, 0.9349240780911063, 0.9197396963123644, 0.02299349240780911, 0.025162689804772233, 0.009978308026030369, 0.9201735357917571, 0.9488069414316703, 0.9340563991323211, 0.8125813449023861, 0.008676789587852495, 0.006507592190889371, 0.006507592190889371, 0.00737527114967462, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006941431670281995, 0.00737527114967462, 0.00824295010845987, 0.00824295010845987, 0.008676789587852495, 0.00911062906724512, 0.00911062906724512, 0.00911062906724512, 0.00911062906724512, 0.00911062906724512, 0.009544468546637744, 0.9357917570498916, 0.9414316702819957, 0.9245119305856833, 0.015618221258134491, 0.013449023861171366, 0.011713665943600867, 0.021691973969631236, 0.9288503253796095, 0.9362255965292842, 0.9240780911062907, 0.015184381778741865, 0.022559652928416486, 0.02386117136659436, 0.026464208242950107, 0.029067245119305855, 0.029067245119305855, 0.03036876355748373, 0.03297180043383948, 0.0368763557483731, 0.0438177874186551, 0.051626898047722344, 0.06898047722342733, 0.10715835140997831, 0.179175704989154, 0.32711496746203905, 0.6876355748373102], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C26.gap.json b/pfam_gap_rates/Peptidase_C26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0f8a77d86775116ad24a672fb71c1995a844eb7
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C26.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C26", "n_seqs": 1468, "length": 247, "gap_rates": [0.5177111716621253, 0.4482288828337875, 0.40054495912806537, 0.3971389645776567, 0.39509536784741145, 0.39373297002724794, 0.3944141689373297, 0.39373297002724794, 0.3957765667574932, 0.49318801089918257, 0.582425068119891, 0.9237057220708447, 0.5667574931880109, 0.5102179836512262, 0.49318801089918257, 0.4604904632152589, 0.43392370572207084, 0.4032697547683924, 0.3685286103542234, 0.30313351498637603, 0.2779291553133515, 0.25204359673024523, 0.24250681198910082, 0.22002724795640327, 0.20095367847411444, 0.18256130790190736, 0.16825613079019072, 0.16553133514986376, 0.2895095367847411, 0.2717983651226158, 0.25204359673024523, 0.2452316076294278, 0.16348773841961853, 0.14237057220708446, 0.14032697547683923, 0.13760217983651227, 0.13487738419618528, 0.13487738419618528, 0.1335149863760218, 0.13419618528610355, 0.13555858310626703, 0.13010899182561309, 0.13010899182561309, 0.12806539509536785, 0.1273841961852861, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C93.gap.json b/pfam_gap_rates/Peptidase_C93.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f3c2b26b921cc20bfbcd4690828297d8a574e72
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C93.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C93", "n_seqs": 301, "length": 184, "gap_rates": [0.8571428571428571, 0.6744186046511628, 0.6312292358803987, 0.6179401993355482, 0.6013289036544851, 0.5813953488372093, 0.5780730897009967, 0.5681063122923588, 0.5681063122923588, 0.5681063122923588, 0.5647840531561462, 0.5647840531561462, 0.5581395348837209, 0.5448504983388704, 0.5448504983388704, 0.5448504983388704, 0.5415282392026578, 0.5415282392026578, 0.5382059800664452, 0.5382059800664452, 0.5348837209302325, 0.5348837209302325, 0.5348837209302325, 0.5348837209302325, 0.53156146179402, 0.5249169435215947, 0.5249169435215947, 0.53156146179402, 0.5182724252491694, 0.5946843853820598, 0.47840531561461797, 0.45182724252491696, 0.39867109634551495, 0.33554817275747506, 0.26578073089701, 0.17940199335548174, 0.11295681063122924, 0.07308970099667775, 0.036544850498338874, 0.029900332225913623, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.019933554817275746, 0.016611295681063124, 0.016611295681063124, 0.013289036544850499, 0.013289036544850499, 0.013289036544850499, 0.07308970099667775, 0.16279069767441862, 0.053156146179401995, 0.016611295681063124, 0.009966777408637873, 0.0033222591362126247, 0.006644518272425249, 0.006644518272425249, 0.026578073089700997, 0.019933554817275746, 0.05647840531561462, 0.046511627906976744, 0.036544850498338874, 0.026578073089700997, 0.013289036544850499, 0.006644518272425249, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.9003322259136213, 0.9003322259136213, 0.9003322259136213, 0.9003322259136213, 0.0033222591362126247, 0.9435215946843853, 0.9435215946843853, 0.023255813953488372, 0.6843853820598007, 0.7275747508305648, 0.6843853820598007, 0.6810631229235881, 0.22259136212624583, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.006644518272425249, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0033222591362126247, 0.009966777408637873, 0.009966777408637873, 0.006644518272425249, 0.006644518272425249, 0.026578073089700997, 0.9269102990033222, 0.013289036544850499, 0.9401993355481728, 0.006644518272425249, 0.7873754152823921, 0.009966777408637873, 0.009966777408637873, 0.9368770764119602, 0.9368770764119602, 0.9102990033222591, 0.009966777408637873, 0.009966777408637873, 0.009966777408637873, 0.009966777408637873, 0.009966777408637873, 0.009966777408637873, 0.013289036544850499, 0.9102990033222591, 0.8504983388704319, 0.016611295681063124, 0.016611295681063124, 0.9235880398671097, 0.016611295681063124, 0.946843853820598, 0.9335548172757475, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.920265780730897, 0.8704318936877077, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.029900332225913623, 0.036544850498338874, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.05647840531561462, 0.07641196013289037, 0.16279069767441862, 0.26245847176079734, 0.3920265780730897, 0.47840531561461797, 0.47840531561461797, 0.4983388704318937, 0.47840531561461797, 0.4850498338870432, 0.4850498338870432, 0.4850498338870432, 0.4850498338870432, 0.4850498338870432, 0.4883720930232558, 0.49169435215946844, 0.5448504983388704, 0.4950166112956811, 0.49169435215946844, 0.4883720930232558, 0.4883720930232558, 0.4883720930232558, 0.5083056478405316, 0.5282392026578073, 0.5481727574750831, 0.6046511627906976, 0.627906976744186, 0.7342192691029901, 0.8704318936877077], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M1.gap.json b/pfam_gap_rates/Peptidase_M1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2a6b5c84d73f510313e22746e3dd00335aa9ad5
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M1.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M1", "n_seqs": 4875, "length": 431, "gap_rates": [0.8426666666666667, 0.7483076923076923, 0.7202051282051282, 0.676923076923077, 0.6482051282051282, 0.6057435897435898, 0.5743589743589743, 0.5331282051282051, 0.47774358974358977, 0.45476923076923076, 0.44594871794871793, 0.4397948717948718, 0.4361025641025641, 0.43323076923076925, 0.4315897435897436, 0.4307692307692308, 0.9327179487179487, 0.4512820512820513, 0.44758974358974357, 0.42523076923076925, 0.422974358974359, 0.4205128205128205, 0.4162051282051282, 0.9308717948717948, 0.9468717948717948, 0.9124102564102564, 0.4125128205128205, 0.40923076923076923, 0.40635897435897433, 0.4043076923076923, 0.3993846153846154, 0.39753846153846156, 0.3965128205128205, 0.3950769230769231, 0.39487179487179486, 0.39384615384615385, 0.39179487179487177, 0.3922051282051282, 0.898051282051282, 0.4408205128205128, 0.40984615384615386, 0.9433846153846154, 0.3811282051282051, 0.37558974358974356, 0.3729230769230769, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M15.gap.json b/pfam_gap_rates/Peptidase_M15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d63a12f21195ffaa9fe42ed9d5125ec1e046eff9
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M15.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M15", "n_seqs": 595, "length": 207, "gap_rates": [0.8571428571428571, 0.7058823529411765, 0.4722689075630252, 0.3915966386554622, 0.37478991596638656, 0.37142857142857144, 0.3680672268907563, 0.3680672268907563, 0.3663865546218487, 0.3630252100840336, 0.346218487394958, 0.32941176470588235, 0.3092436974789916, 0.29747899159663865, 0.292436974789916, 0.28403361344537814, 0.280672268907563, 0.27899159663865547, 0.27563025210084036, 0.2722689075630252, 0.2722689075630252, 0.2722689075630252, 0.27058823529411763, 0.27058823529411763, 0.27058823529411763, 0.27058823529411763, 0.27058823529411763, 0.27058823529411763, 0.27058823529411763, 0.7781512605042017, 0.6521008403361345, 0.3630252100840336, 0.2722689075630252, 0.27058823529411763, 0.27058823529411763, 0.25210084033613445, 0.24033613445378152, 0.23025210084033612, 0.21680672268907564, 0.21176470588235294, 0.20840336134453782, 0.20504201680672268, 0.1949579831932773, 0.1899159663865546, 0.1815126050420168, 0.17983193277310924, 0.17647058823529413, 0.17478991596638654, 0.173109243697479, 0.16974789915966387, 0.15966386554621848, 0.16302521008403362, 0.16134453781512606, 0.15798319327731092, 0.15966386554621848, 0.15126050420168066, 0.16638655462184873, 0.1361344537815126, 0.13109243697478992, 0.9478991596638655, 0.946218487394958, 0.12100840336134454, 0.11932773109243698, 0.11932773109243698, 0.11596638655462185, 0.11596638655462185, 0.11596638655462185, 0.11596638655462185, 0.11596638655462185, 0.11428571428571428, 0.11596638655462185, 0.11428571428571428, 0.11596638655462185, 0.11596638655462185, 0.11596638655462185, 0.11596638655462185, 0.11596638655462185, 0.5747899159663865, 0.5596638655462185, 0.13445378151260504, 0.12941176470588237, 0.12605042016806722, 0.1226890756302521, 0.11932773109243698, 0.11764705882352941, 0.1226890756302521, 0.12941176470588237, 0.12436974789915967, 0.12773109243697478, 0.1361344537815126, 0.12941176470588237, 0.12773109243697478, 0.12773109243697478, 0.13445378151260504, 0.1361344537815126, 0.12941176470588237, 0.1361344537815126, 0.14285714285714285, 0.49747899159663866, 0.49411764705882355, 0.48739495798319327, 0.4773109243697479, 0.4756302521008403, 0.4773109243697479, 0.492436974789916, 0.5294117647058824, 0.4823529411764706, 0.7277310924369748, 0.7495798319327731, 0.7176470588235294, 0.43025210084033616, 0.4016806722689076, 0.3680672268907563, 0.3092436974789916, 0.10420168067226891, 0.10252100840336134, 0.10084033613445378, 0.09915966386554621, 0.09915966386554621, 0.09915966386554621, 0.10084033613445378, 0.09915966386554621, 0.09747899159663866, 0.09747899159663866, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.10420168067226891, 0.680672268907563, 0.146218487394958, 0.14789915966386555, 0.1546218487394958, 0.15294117647058825, 0.13445378151260504, 0.10588235294117647, 0.0907563025210084, 0.08907563025210084, 0.08907563025210084, 0.08907563025210084, 0.0907563025210084, 0.0907563025210084, 0.08907563025210084, 0.0907563025210084, 0.0907563025210084, 0.0907563025210084, 0.0907563025210084, 0.09411764705882353, 0.09411764705882353, 0.08739495798319327, 0.08739495798319327, 0.08907563025210084, 0.09411764705882353, 0.09243697478991597, 0.0907563025210084, 0.09747899159663866, 0.5764705882352941, 0.15630252100840336, 0.10588235294117647, 0.09915966386554621, 0.09243697478991597, 0.0907563025210084, 0.0907563025210084, 0.08571428571428572, 0.08571428571428572, 0.08907563025210084, 0.08571428571428572, 0.08403361344537816, 0.08403361344537816, 0.08403361344537816, 0.08403361344537816, 0.08235294117647059, 0.08235294117647059, 0.08403361344537816, 0.08403361344537816, 0.08403361344537816, 0.08403361344537816, 0.08235294117647059, 0.08235294117647059, 0.08235294117647059, 0.08235294117647059, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08739495798319327, 0.08739495798319327, 0.08739495798319327, 0.08739495798319327, 0.0957983193277311, 0.11260504201680673, 0.1411764705882353, 0.17647058823529413, 0.20840336134453782, 0.5378151260504201, 0.5428571428571428, 0.5680672268907563, 0.6100840336134454, 0.4504201680672269, 0.4890756302521008, 0.5411764705882353, 0.5865546218487395, 0.6521008403361345, 0.692436974789916, 0.7210084033613445, 0.7579831932773109, 0.7781512605042017, 0.865546218487395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M16_C.gap.json b/pfam_gap_rates/Peptidase_M16_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4715377c4056f73b8c61ab9549b59d51efd22f36
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M16_C.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M16_C", "n_seqs": 5000, "length": 223, "gap_rates": [0.7868, 0.3878, 0.2792, 0.1838, 0.1458, 0.1182, 0.101, 0.096, 0.0892, 0.084, 0.0816, 0.0794, 0.0778, 0.0772, 0.074, 0.0694, 0.0688, 0.0672, 0.064, 0.0592, 0.0542, 0.0522, 0.052, 0.0504, 0.0494, 0.0492, 0.1142, 0.0512, 0.0498, 0.0504, 0.0704, 0.0502, 0.0488, 0.0484, 0.0474, 0.046, 0.0744, 0.0552, 0.9332, 0.0532, 0.0528, 0.0464, 0.0462, 0.044, 0.0422, 0.0422, 0.1054, 0.2024, 0.375, 0.674, 0.8214, 0.8652, 0.9218, 0.9414, 0.9496, 0.946, 0.9328, 0.896, 0.844, 0.7864, 0.6212, 0.2034, 0.1348, 0.0902, 0.073, 0.064, 0.0658, 0.0602, 0.0564, 0.0592, 0.0698, 0.3512, 0.26, 0.0968, 0.0702, 0.0594, 0.0562, 0.0496, 0.0446, 0.0422, 0.041, 0.0402, 0.042, 0.0432, 0.0426, 0.9124, 0.9434, 0.9252, 0.902, 0.0504, 0.3462, 0.841, 0.1332, 0.0386, 0.0328, 0.0308, 0.0284, 0.0268, 0.0276, 0.0268, 0.0256, 0.0258, 0.026, 0.0262, 0.0274, 0.0254, 0.8782, 0.9276, 0.9372, 0.9066, 0.8342, 0.5492, 0.0644, 0.0426, 0.0354, 0.0276, 0.0234, 0.0228, 0.0228, 0.023, 0.023, 0.023, 0.0224, 0.0222, 0.0226, 0.022, 0.0226, 0.0228, 0.0232, 0.025, 0.8724, 0.8864, 0.889, 0.9024, 0.9482, 0.9494, 0.9074, 0.8958, 0.8888, 0.8794, 0.8052, 0.188, 0.1316, 0.129, 0.0976, 0.0284, 0.0256, 0.0258, 0.0262, 0.0242, 0.0242, 0.3308, 0.045, 0.0374, 0.0342, 0.0332, 0.9416, 0.032, 0.0318, 0.029, 0.0284, 0.0284, 0.0292, 0.0302, 0.8222, 0.0394, 0.038, 0.0846, 0.0766, 0.0482, 0.8674, 0.9234, 0.788, 0.1638, 0.1518, 0.0376, 0.0364, 0.0372, 0.0372, 0.0382, 0.0378, 0.0386, 0.0414, 0.041, 0.041, 0.0594, 0.0576, 0.8636, 0.8786, 0.6684, 0.0746, 0.052, 0.0524, 0.0494, 0.0506, 0.0516, 0.0522, 0.0522, 0.0526, 0.0528, 0.055, 0.0568, 0.0584, 0.0618, 0.0656, 0.0698, 0.074, 0.079, 0.0886, 0.2574, 0.1086, 0.1082, 0.109, 0.1146, 0.1226, 0.1294, 0.1416, 0.159, 0.1878, 0.2244, 0.3122, 0.5274, 0.7582], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M20.gap.json b/pfam_gap_rates/Peptidase_M20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..819c98de869052be2d8381479287a391fbdfd360
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M20.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M29.gap.json b/pfam_gap_rates/Peptidase_M29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..054f1a956aa03fc6ccd3fe133b904b23f757aae7
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M29.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M3_N.gap.json b/pfam_gap_rates/Peptidase_M3_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20944eb488705cdd34aceedc44707315286f29e1
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M3_N.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M3_N", "n_seqs": 1194, "length": 70, "gap_rates": [0.3492462311557789, 0.21943048576214405, 0.18509212730318259, 0.1440536013400335, 0.12479061976549413, 0.11139028475711893, 0.09463986599664992, 0.0711892797319933, 0.05108877721943048, 0.03433835845896147, 0.03098827470686767, 0.02763819095477387, 0.02512562814070352, 0.021775544388609715, 0.020938023450586266, 0.035175879396984924, 0.4355108877721943, 0.0745393634840871, 0.06448911222780569, 0.02512562814070352, 0.010887772194304857, 0.006700167504187605, 0.005862646566164154, 0.015912897822445562, 0.01423785594639866, 0.011725293132328308, 0.0016750418760469012, 0.0016750418760469012, 0.0008375209380234506, 0.0008375209380234506, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008375209380234506, 0.0008375209380234506, 0.0008375209380234506, 0.0008375209380234506, 0.0008375209380234506, 0.0016750418760469012, 0.0016750418760469012, 0.0016750418760469012, 0.002512562814070352, 0.0041876046901172526, 0.006700167504187605, 0.005862646566164154, 0.005862646566164154, 0.007537688442211055, 0.019262981574539362, 0.008375209380234505, 0.009212730318257957, 0.009212730318257957, 0.01507537688442211, 0.018425460636515914, 0.023450586264656615, 0.02680067001675042, 0.031825795644891124, 0.038525963149078725, 0.052763819095477386, 0.05611390284757119, 0.059463986599664995, 0.0812395309882747, 0.13149078726968175, 0.22529313232830822, 0.34840871021775544], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M41.gap.json b/pfam_gap_rates/Peptidase_M41.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..605d98aa052e3e1223c82cd25f9ff160436cec55
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M41.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M41", "n_seqs": 3982, "length": 215, "gap_rates": [0.8822199899547966, 0.3616273229532898, 0.17428427925665493, 0.10748367654445003, 0.09442491210447011, 0.09316926167754896, 0.09241587142139629, 0.09191361125062783, 0.09090909090909091, 0.09065796082370668, 0.08990457056755399, 0.0891511803114013, 0.08890005022601707, 0.0873932697137117, 0.0856353591160221, 0.08789552988448016, 0.09593169261677549, 0.07985936715218483, 0.13058764439979909, 0.1220492214967353, 0.07810145655449523, 0.07810145655449523, 0.07056755399296835, 0.06378704168759418, 0.05976896032144651, 0.05725765946760422, 0.05424409844299347, 0.052235057759919636, 0.050728277247614265, 0.048970366649924664, 0.04696132596685083, 0.04645906579608237, 0.045956805625313915, 0.045956805625313915, 0.04470115519839277, 0.04369663485685585, 0.04394776494224008, 0.04419889502762431, 0.04394776494224008, 0.043445504771471626, 0.04394776494224008, 0.045203415369161226, 0.045454545454545456, 0.044952285283776997, 0.046207935710698145, 0.048719236564540434, 0.0544952285283777, 0.07132094424912104, 0.04922149673530889, 0.045956805625313915, 0.04445002511300854, 0.04419889502762431, 0.042943244600703166, 0.04093420391762933, 0.04143646408839779, 0.04168759417378202, 0.04445002511300854, 0.045454545454545456, 0.045956805625313915, 0.04645906579608237, 0.0467101958814666, 0.763184329482672, 0.047463586137619286, 0.04696132596685083, 0.046207935710698145, 0.046207935710698145, 0.045203415369161226, 0.045454545454545456, 0.04419889502762431, 0.042943244600703166, 0.04419889502762431, 0.04193872425916625, 0.04218985434455048, 0.04043194374686088, 0.1850828729281768, 0.0891511803114013, 0.04043194374686088, 0.9284279256654947, 0.03867403314917127, 0.03741838272225013, 0.03691612255148167, 0.0371672526368659, 0.03741838272225013, 0.03666499246609744, 0.03691612255148167, 0.03641386238071321, 0.03666499246609744, 0.03415369161225515, 0.03440482169763938, 0.03415369161225515, 0.03490708186840784, 0.03365143144148669, 0.032898041185334, 0.03340030135610246, 0.03390256152687092, 0.03415369161225515, 0.03465595178302361, 0.03515821195379206, 0.03515821195379206, 0.03415369161225515, 0.03415369161225515, 0.03465595178302361, 0.03440482169763938, 0.6888498242089403, 0.6624811652435962, 0.03490708186840784, 0.03566047212456052, 0.03591160220994475, 0.03591160220994475, 0.03566047212456052, 0.0371672526368659, 0.03691612255148167, 0.03666499246609744, 0.0371672526368659, 0.0371672526368659, 0.03741838272225013, 0.03792064289301859, 0.0371672526368659, 0.03766951280763436, 0.03842290306378704, 0.03817177297840281, 0.03842290306378704, 0.03867403314917127, 0.0389251632345555, 0.03691612255148167, 0.03741838272225013, 0.0389251632345555, 0.04445002511300854, 0.05901557006529382, 0.04193872425916625, 0.04118533400301356, 0.04419889502762431, 0.04419889502762431, 0.17704671019588147, 0.053239578101456554, 0.05650426921145153, 0.055750878955298844, 0.05424409844299347, 0.055248618784530384, 0.06629834254143646, 0.06755399296835761, 0.06780512305374184, 0.0743345052737318, 0.07910597689603215, 0.09040683073832245, 0.6767955801104972, 0.4427423405323958, 0.4643395278754395, 0.413360120542441, 0.41637368156705173, 0.4889502762430939, 0.45655449522852837, 0.3493219487694626, 0.2923154193872426, 0.2523857358111502, 0.21848317428427927, 0.18156705173279758, 0.1479156202913109, 0.10848819688598695, 0.08764439979909593, 0.08186840783525866, 0.077850326469111, 0.07533902561526871, 0.07232546459065796, 0.06730286288297338, 0.06253139126067303, 0.06202913108990457, 0.06077348066298342, 0.06127574083375188, 0.06052235057759919, 0.06052235057759919, 0.05926670015067805, 0.05876443997990959, 0.05901557006529382, 0.05951783023606228, 0.05976896032144651, 0.05926670015067805, 0.05976896032144651, 0.05976896032144651, 0.05976896032144651, 0.06002009040683074, 0.05951783023606228, 0.06052235057759919, 0.06052235057759919, 0.06077348066298342, 0.06077348066298342, 0.06102461074836765, 0.06127574083375188, 0.06127574083375188, 0.06152687091913611, 0.0622802611752888, 0.06303365143144149, 0.06328478151682572, 0.06378704168759418, 0.06378704168759418, 0.06454043194374687, 0.06454043194374687, 0.06454043194374687, 0.06479156202913108, 0.06529382219989954, 0.06529382219989954, 0.06654947262682069, 0.06680060271220492, 0.06705173279758915, 0.06855851330989453, 0.06906077348066299, 0.06981416373681568, 0.0700652938221999, 0.07106981416373681, 0.07257659467604219, 0.07533902561526871, 0.07935710698141638, 0.1037167252636866, 0.1928679055750879, 0.4613259668508287], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M4_C.gap.json b/pfam_gap_rates/Peptidase_M4_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..093ab6e3b2c9d852908ccf93811fb6d9f4760ee4
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M4_C.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M4_C", "n_seqs": 548, "length": 202, "gap_rates": [0.2737226277372263, 0.17335766423357665, 0.15145985401459855, 0.145985401459854, 0.14051094890510948, 0.1332116788321168, 0.08941605839416059, 0.07664233576642336, 0.072992700729927, 0.06386861313868614, 0.0364963503649635, 0.03102189781021898, 0.025547445255474453, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.1332116788321168, 0.14233576642335766, 0.14233576642335766, 0.14416058394160583, 0.1386861313868613, 0.15875912408759124, 0.15875912408759124, 0.1897810218978102, 0.9051094890510949, 0.9452554744525548, 0.9251824817518248, 0.8193430656934306, 0.5200729927007299, 0.20072992700729927, 0.1843065693430657, 0.12956204379562045, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.021897810218978103, 0.025547445255474453, 0.029197080291970802, 0.03102189781021898, 0.032846715328467155, 0.058394160583941604, 0.06204379562043796, 0.49635036496350365, 0.3704379562043796, 0.28102189781021897, 0.12773722627737227, 0.10218978102189781, 0.043795620437956206, 0.0364963503649635, 0.025547445255474453, 0.021897810218978103, 0.021897810218978103, 0.020072992700729927, 0.020072992700729927, 0.020072992700729927, 0.020072992700729927, 0.020072992700729927, 0.020072992700729927, 0.2664233576642336, 0.6624087591240876, 0.7043795620437956, 0.7208029197080292, 0.7408759124087592, 0.7244525547445255, 0.7135036496350365, 0.6806569343065694, 0.6514598540145985, 0.0364963503649635, 0.041970802919708027, 0.0364963503649635, 0.032846715328467155, 0.029197080291970802, 0.02737226277372263, 0.023722627737226276, 0.02737226277372263, 0.03102189781021898, 0.032846715328467155, 0.9379562043795621, 0.9178832116788321, 0.24087591240875914, 0.45072992700729925, 0.41605839416058393, 0.8540145985401459, 0.8923357664233577, 0.9361313868613139, 0.9251824817518248, 0.8813868613138686, 0.8503649635036497, 0.4051094890510949, 0.22445255474452555, 0.03102189781021898, 0.023722627737226276, 0.021897810218978103, 0.021897810218978103, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.025547445255474453, 0.025547445255474453, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.023722627737226276, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.5474452554744526, 0.6751824817518248, 0.6879562043795621, 0.7645985401459854, 0.7700729927007299, 0.781021897810219, 0.8266423357664233, 0.8302919708029197, 0.8138686131386861, 0.7700729927007299, 0.7664233576642335, 0.7317518248175182, 0.6861313868613139, 0.6733576642335767, 0.5437956204379562, 0.5273722627737226, 0.5164233576642335, 0.5145985401459854, 0.5036496350364964, 0.4981751824817518, 0.2427007299270073, 0.14416058394160583, 0.12773722627737227, 0.023722627737226276, 0.023722627737226276, 0.02737226277372263, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.15145985401459855, 0.7828467153284672, 0.03102189781021898, 0.029197080291970802, 0.03102189781021898, 0.029197080291970802, 0.02737226277372263, 0.02737226277372263, 0.03102189781021898, 0.02737226277372263, 0.029197080291970802, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.02737226277372263, 0.029197080291970802, 0.029197080291970802, 0.03102189781021898, 0.03102189781021898, 0.032846715328467155, 0.0364963503649635, 0.043795620437956206, 0.24452554744525548, 0.16605839416058393, 0.3284671532846715, 0.2864963503649635, 0.10036496350364964, 0.08759124087591241, 0.08759124087591241, 0.07116788321167883, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.07481751824817519, 0.07664233576642336, 0.07846715328467153, 0.08211678832116788, 0.08576642335766424, 0.09306569343065693, 0.10218978102189781, 0.15875912408759124], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_MA_2.gap.json b/pfam_gap_rates/Peptidase_MA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3a567730b593f299daa44173bb46771c11f4bb6
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_MA_2.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_MA_2", "n_seqs": 117, "length": 244, "gap_rates": [0.8803418803418803, 0.8547008547008547, 0.8290598290598291, 0.8034188034188035, 0.7948717948717948, 0.7863247863247863, 0.7521367521367521, 0.7264957264957265, 0.717948717948718, 0.7094017094017094, 0.7008547008547008, 0.6923076923076923, 0.6495726495726496, 0.6410256410256411, 0.6068376068376068, 0.5982905982905983, 0.5897435897435898, 0.5384615384615384, 0.49572649572649574, 0.48717948717948717, 0.48717948717948717, 0.47863247863247865, 0.47863247863247865, 0.47863247863247865, 0.47863247863247865, 0.47863247863247865, 0.47863247863247865, 0.48717948717948717, 0.48717948717948717, 0.49572649572649574, 0.48717948717948717, 0.47863247863247865, 0.48717948717948717, 0.49572649572649574, 0.47863247863247865, 0.47863247863247865, 0.9487179487179487, 0.47863247863247865, 0.452991452991453, 0.49572649572649574, 0.42735042735042733, 0.4188034188034188, 0.41025641025641024, 0.39316239316239315, 0.39316239316239315, 0.39316239316239315, 0.4188034188034188, 0.39316239316239315, 0.39316239316239315, 0.39316239316239315, 0.39316239316239315, 0.41025641025641024, 0.39316239316239315, 0.4017094017094017, 0.39316239316239315, 0.37606837606837606, 0.38461538461538464, 0.38461538461538464, 0.36752136752136755, 0.358974358974359, 0.9487179487179487, 0.9487179487179487, 0.358974358974359, 0.3504273504273504, 0.36752136752136755, 0.3333333333333333, 0.3333333333333333, 0.36752136752136755, 0.26495726495726496, 0.9401709401709402, 0.9401709401709402, 0.9316239316239316, 0.19658119658119658, 0.1282051282051282, 0.017094017094017096, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.0, 0.0, 0.017094017094017096, 0.02564102564102564, 0.03418803418803419, 0.017094017094017096, 0.05128205128205128, 0.17094017094017094, 0.3418803418803419, 0.5042735042735043, 0.36752136752136755, 0.1794871794871795, 0.07692307692307693, 0.02564102564102564, 0.02564102564102564, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03418803418803419, 0.008547008547008548, 0.008547008547008548, 0.9487179487179487, 0.9316239316239316, 0.0, 0.0, 0.017094017094017096, 0.02564102564102564, 0.0, 0.042735042735042736, 0.9487179487179487, 0.05128205128205128, 0.05982905982905983, 0.05982905982905983, 0.9487179487179487, 0.9487179487179487, 0.9487179487179487, 0.9487179487179487, 0.05128205128205128, 0.042735042735042736, 0.017094017094017096, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.0, 0.008547008547008548, 0.017094017094017096, 0.008547008547008548, 0.008547008547008548, 0.017094017094017096, 0.017094017094017096, 0.008547008547008548, 0.008547008547008548, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.05128205128205128, 0.05128205128205128, 0.05982905982905983, 0.06837606837606838, 0.9316239316239316, 0.11965811965811966, 0.9230769230769231, 0.1111111111111111, 0.06837606837606838, 0.06837606837606838, 0.9487179487179487, 0.07692307692307693, 0.042735042735042736, 0.03418803418803419, 0.0, 0.008547008547008548, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008547008547008548, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008547008547008548, 0.008547008547008548, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.02564102564102564, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.02564102564102564, 0.03418803418803419, 0.042735042735042736, 0.06837606837606838, 0.042735042735042736, 0.06837606837606838, 0.07692307692307693, 0.1111111111111111, 0.1282051282051282, 0.10256410256410256, 0.11965811965811966, 0.11965811965811966, 0.11965811965811966, 0.11965811965811966, 0.11965811965811966, 0.1282051282051282, 0.13675213675213677, 0.1452991452991453, 0.1794871794871795, 0.2564102564102564, 0.3333333333333333, 0.39316239316239315, 0.47863247863247865, 0.5470085470085471, 0.811965811965812, 0.8205128205128205, 0.811965811965812, 0.7777777777777778, 0.7948717948717948, 0.811965811965812, 0.8461538461538461, 0.8205128205128205, 0.811965811965812, 0.811965811965812, 0.811965811965812, 0.811965811965812, 0.811965811965812, 0.8205128205128205, 0.8290598290598291, 0.8547008547008547, 0.8547008547008547, 0.8632478632478633, 0.8803418803418803, 0.8717948717948718, 0.8803418803418803, 0.8888888888888888, 0.905982905982906, 0.9230769230769231, 0.9401709401709402, 0.9401709401709402, 0.9401709401709402, 0.9487179487179487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S13.gap.json b/pfam_gap_rates/Peptidase_S13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6429c792c29d6f032bd65767b1c36b90ed2f65c
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S13.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S26.gap.json b/pfam_gap_rates/Peptidase_S26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6be58594eb879a843f361ed815c1848bb0ccf211
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S26.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_S26", "n_seqs": 1340, "length": 157, "gap_rates": [0.9171641791044776, 0.8597014925373134, 0.8514925373134329, 0.8492537313432836, 0.844776119402985, 0.8440298507462687, 0.8440298507462687, 0.8432835820895522, 0.8432835820895522, 0.8425373134328358, 0.8425373134328358, 0.8425373134328358, 0.8380597014925373, 0.835820895522388, 0.8350746268656717, 0.8343283582089552, 0.8335820895522388, 0.8291044776119403, 0.826865671641791, 0.823134328358209, 0.8097014925373134, 0.9447761194029851, 0.8014925373134328, 0.7574626865671642, 0.7388059701492538, 0.7223880597014926, 0.7194029850746269, 0.7186567164179104, 0.7179104477611941, 0.7171641791044776, 0.7149253731343284, 0.7134328358208956, 0.7126865671641791, 0.7141791044776119, 0.7126865671641791, 0.7708955223880597, 0.7716417910447761, 0.7768656716417911, 0.7791044776119403, 0.7388059701492538, 0.7365671641791045, 0.7373134328358208, 0.7485074626865672, 0.7283582089552239, 0.7044776119402985, 0.6917910447761194, 0.6880597014925374, 0.6694029850746268, 0.6462686567164179, 0.6208955223880597, 0.6119402985074627, 0.8656716417910447, 0.8985074626865671, 0.9156716417910448, 0.9440298507462687, 0.9082089552238806, 0.891044776119403, 0.8470149253731343, 0.5014925373134328, 0.48208955223880595, 0.4708955223880597, 0.46940298507462686, 0.46567164179104475, 0.46567164179104475, 0.46417910447761196, 0.46417910447761196, 0.4626865671641791, 0.4619402985074627, 0.4619402985074627, 0.4619402985074627, 0.46044776119402986, 0.46044776119402986, 0.9134328358208955, 0.9022388059701493, 0.46119402985074626, 0.4619402985074627, 0.4626865671641791, 0.4619402985074627, 0.46044776119402986, 0.47388059701492535, 0.4634328358208955, 0.4619402985074627, 0.458955223880597, 0.4582089552238806, 0.45597014925373136, 0.9156716417910448, 0.9037313432835821, 0.45597014925373136, 0.4544776119402985, 0.4537313432835821, 0.45298507462686566, 0.4537313432835821, 0.48880597014925375, 0.4798507462686567, 0.48134328358208955, 0.48059701492537316, 0.4783582089552239, 0.46119402985074626, 0.44776119402985076, 0.44029850746268656, 0.43582089552238806, 0.43582089552238806, 0.4343283582089552, 0.4014925373134328, 0.39552238805970147, 0.3850746268656716, 0.3656716417910448, 0.8925373134328358, 0.44850746268656716, 0.26417910447761195, 0.15298507462686567, 0.06417910447761194, 0.006716417910447761, 0.005970149253731343, 0.006716417910447761, 0.0052238805970149255, 0.0052238805970149255, 0.005970149253731343, 0.0052238805970149255, 0.0052238805970149255, 0.0037313432835820895, 0.0037313432835820895, 0.09104477611940298, 0.004477611940298508, 0.0037313432835820895, 0.004477611940298508, 0.004477611940298508, 0.004477611940298508, 0.004477611940298508, 0.004477611940298508, 0.004477611940298508, 0.0052238805970149255, 0.010447761194029851, 0.8552238805970149, 0.9059701492537313, 0.9111940298507463, 0.9067164179104478, 0.9014925373134328, 0.8373134328358209, 0.023134328358208955, 0.026119402985074626, 0.026119402985074626, 0.028358208955223882, 0.029104477611940297, 0.029104477611940297, 0.03283582089552239, 0.034328358208955224, 0.03582089552238806, 0.04626865671641791, 0.05149253731343283, 0.06865671641791045, 0.16417910447761194, 0.3611940298507463, 0.43656716417910446, 0.4626865671641791, 0.573134328358209, 0.8873134328358209], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S41.gap.json b/pfam_gap_rates/Peptidase_S41.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a0ed4845cb3803cd034b03247b57abf7982ce97
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S41.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S46.gap.json b/pfam_gap_rates/Peptidase_S46.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6ab795e821ff7819f3b05b264260b9d251393f6
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S46.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S49.gap.json b/pfam_gap_rates/Peptidase_S49.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..353565ba42ecec9da3f46e657d6ce5d5c04e9f0b
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S49.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_S49", "n_seqs": 2474, "length": 156, "gap_rates": [0.6705739692805174, 0.3278092158447858, 0.17340339531123686, 0.12166531932093776, 0.06911883589329022, 0.05618431689571544, 0.04931285367825384, 0.04648342764753436, 0.043249797898140666, 0.04244139046079224, 0.04244139046079224, 0.041228779304769606, 0.04082457558609539, 0.039611964430072755, 0.038803556992724336, 0.03637833468067906, 0.03839935327405012, 0.21665319320937754, 0.03152789005658852, 0.0274858528698464, 0.0274858528698464, 0.027081649151172192, 0.02667744543249798, 0.026273241713823767, 0.02667744543249798, 0.025464834276475345, 0.02465642683912692, 0.024252223120452707, 0.02465642683912692, 0.02465642683912692, 0.024252223120452707, 0.024252223120452707, 0.024252223120452707, 0.023443815683104285, 0.023848019401778497, 0.023848019401778497, 0.023443815683104285, 0.023848019401778497, 0.023848019401778497, 0.024252223120452707, 0.024252223120452707, 0.024252223120452707, 0.024252223120452707, 0.02465642683912692, 0.025464834276475345, 0.028294260307194827, 0.02869846402586904, 0.030719482619240096, 0.030719482619240096, 0.030315278900565887, 0.030315278900565887, 0.03112368633791431, 0.03233629749393695, 0.03112368633791431, 0.030719482619240096, 0.030315278900565887, 0.030315278900565887, 0.030315278900565887, 0.030719482619240096, 0.030719482619240096, 0.030719482619240096, 0.029911075181891674, 0.030719482619240096, 0.029911075181891674, 0.030315278900565887, 0.030315278900565887, 0.029911075181891674, 0.02869846402586904, 0.030315278900565887, 0.032740501212611156, 0.03233629749393695, 0.03193209377526273, 0.07558609539207761, 0.7582861762328214, 0.7364591754244139, 0.041228779304769606, 0.03597413096200485, 0.034357316087308, 0.02950687146321746, 0.02950687146321746, 0.02869846402586904, 0.02910266774454325, 0.02950687146321746, 0.02869846402586904, 0.028294260307194827, 0.02667744543249798, 0.025464834276475345, 0.025060630557801132, 0.025060630557801132, 0.025869037995149554, 0.026273241713823767, 0.025060630557801132, 0.025060630557801132, 0.025060630557801132, 0.025869037995149554, 0.024252223120452707, 0.024252223120452707, 0.023848019401778497, 0.023848019401778497, 0.02465642683912692, 0.024252223120452707, 0.023848019401778497, 0.023443815683104285, 0.023443815683104285, 0.023443815683104285, 0.023443815683104285, 0.02465642683912692, 0.024252223120452707, 0.10670978172999192, 0.11924009700889249, 0.030315278900565887, 0.030719482619240096, 0.030315278900565887, 0.02910266774454325, 0.02950687146321746, 0.033144704931285365, 0.045675020210185935, 0.039611964430072755, 0.037186742118027485, 0.03354890864995958, 0.03233629749393695, 0.9320937752627324, 0.8556992724333063, 0.032740501212611156, 0.033144704931285365, 0.033144704931285365, 0.033144704931285365, 0.03395311236863379, 0.03395311236863379, 0.03556992724333064, 0.037590945836701695, 0.037590945836701695, 0.041228779304769606, 0.04244139046079224, 0.041632983023443815, 0.04203718674211803, 0.04244139046079224, 0.04244139046079224, 0.043249797898140666, 0.045675020210185935, 0.04890864995957963, 0.05578011317704123, 0.06184316895715441, 0.07599029911075182, 0.08447857720291027, 0.09943411479385611, 0.11398544866612773, 0.14591754244139046, 0.1847210994341148, 0.23888439773645917, 0.2946645109135004, 0.3367016976556184, 0.40622473726758285, 0.4757477768795473, 0.5517380759902991, 0.6556184316895716], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S78.gap.json b/pfam_gap_rates/Peptidase_S78.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef7ebc43d874c2e5bc99fda6e2b090a1a38e3743
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S78.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_S78", "n_seqs": 469, "length": 182, "gap_rates": [0.9466950959488273, 0.8592750533049041, 0.8017057569296375, 0.7356076759061834, 0.6993603411513859, 0.6609808102345416, 0.6311300639658849, 0.579957356076759, 0.929637526652452, 0.8869936034115139, 0.4968017057569296, 0.43710021321961623, 0.3752665245202559, 0.4925373134328358, 0.8486140724946695, 0.3326226012793177, 0.24946695095948826, 0.24733475479744135, 0.24307036247334754, 0.24946695095948826, 0.24093816631130063, 0.24093816631130063, 0.23667377398720682, 0.21535181236673773, 0.21321961620469082, 0.21321961620469082, 0.21535181236673773, 0.21108742004264391, 0.21321961620469082, 0.6460554371002132, 0.5991471215351812, 0.5884861407249466, 0.8507462686567164, 0.9104477611940298, 0.8592750533049041, 0.8272921108742004, 0.5884861407249466, 0.18976545842217485, 0.17057569296375266, 0.16844349680170576, 0.16631130063965885, 0.16417910447761194, 0.16204690831556504, 0.15565031982942432, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.14712153518123666, 0.14712153518123666, 0.1513859275053305, 0.15565031982942432, 0.15778251599147122, 0.5565031982942431, 0.373134328358209, 0.17270788912579957, 0.7100213219616205, 0.8208955223880597, 0.7846481876332623, 0.6908315565031983, 0.1279317697228145, 0.10874200426439233, 0.08528784648187633, 0.08102345415778252, 0.07889125799573561, 0.0767590618336887, 0.07462686567164178, 0.07889125799573561, 0.12366737739872068, 0.0767590618336887, 0.07036247334754797, 0.06823027718550106, 0.057569296375266525, 0.05543710021321962, 0.05543710021321962, 0.057569296375266525, 0.18976545842217485, 0.5373134328358209, 0.511727078891258, 0.5671641791044776, 0.47547974413646055, 0.08102345415778252, 0.057569296375266525, 0.04904051172707889, 0.046908315565031986, 0.04477611940298507, 0.03837953091684435, 0.03624733475479744, 0.04477611940298507, 0.03624733475479744, 0.0255863539445629, 0.021321961620469083, 0.021321961620469083, 0.021321961620469083, 0.023454157782515993, 0.021321961620469083, 0.9189765458422174, 0.5053304904051172, 0.021321961620469083, 0.023454157782515993, 0.031982942430703626, 0.02771855010660981, 0.0255863539445629, 0.017057569296375266, 0.017057569296375266, 0.02771855010660981, 0.03411513859275053, 0.07249466950959488, 0.07036247334754797, 0.06183368869936034, 0.053304904051172705, 0.01279317697228145, 0.01279317697228145, 0.01279317697228145, 0.01279317697228145, 0.017057569296375266, 0.017057569296375266, 0.014925373134328358, 0.01279317697228145, 0.01279317697228145, 0.01279317697228145, 0.014925373134328358, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.8592750533049041, 0.8187633262260128, 0.05543710021321962, 0.17484008528784648, 0.14712153518123666, 0.07462686567164178, 0.053304904051172705, 0.031982942430703626, 0.04051172707889126, 0.07889125799573561, 0.9104477611940298, 0.9445628997867804, 0.8635394456289979, 0.11940298507462686, 0.5863539445628998, 0.4136460554371002, 0.32409381663113007, 0.9466950959488273, 0.9168443496801706, 0.10660980810234541, 0.029850746268656716, 0.02771855010660981, 0.021321961620469083, 0.021321961620469083, 0.014925373134328358, 0.014925373134328358, 0.017057569296375266, 0.8187633262260128, 0.014925373134328358, 0.01279317697228145, 0.01279317697228145, 0.01279317697228145, 0.01279317697228145, 0.01279317697228145, 0.01279317697228145, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.017057569296375266, 0.017057569296375266, 0.021321961620469083, 0.031982942430703626, 0.046908315565031986, 0.09808102345415778, 0.08955223880597014, 0.10874200426439233, 0.34328358208955223, 0.373134328358209, 0.3603411513859275, 0.47547974413646055, 0.5863539445628998, 0.6695095948827292, 0.7014925373134329, 0.7803837953091685, 0.8251599147121536, 0.8784648187633263], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_U57.gap.json b/pfam_gap_rates/Peptidase_U57.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d173512fc1d5641293deabef544aec147780a80
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_U57.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peroxidase_2.gap.json b/pfam_gap_rates/Peroxidase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25cb4517c23bbb22c5f51430af7edba64fea91b2
--- /dev/null
+++ b/pfam_gap_rates/Peroxidase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Peroxidase_2", "n_seqs": 513, "length": 237, "gap_rates": [0.9434697855750487, 0.9317738791423001, 0.9278752436647173, 0.9200779727095516, 0.9103313840155945, 0.9005847953216374, 0.8732943469785575, 0.8557504873294347, 0.834307992202729, 0.8011695906432749, 0.7348927875243665, 0.6569200779727096, 0.6120857699805068, 0.4502923976608187, 0.2826510721247563, 0.24366471734892786, 0.19103313840155944, 0.1539961013645224, 0.11500974658869395, 0.08576998050682261, 0.05847953216374269, 0.04873294346978557, 0.01949317738791423, 0.017543859649122806, 0.015594541910331383, 0.015594541910331383, 0.015594541910331383, 0.015594541910331383, 0.015594541910331383, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.005847953216374269, 0.011695906432748537, 0.03313840155945419, 0.05263157894736842, 0.07407407407407407, 0.07797270955165692, 0.10526315789473684, 0.13060428849902533, 0.1442495126705653, 0.949317738791423, 0.9434697855750487, 0.18908382066276802, 0.19883040935672514, 0.20857699805068225, 0.25146198830409355, 0.25925925925925924, 0.27680311890838205, 0.290448343079922, 0.29434697855750486, 0.3079922027290448, 0.31189083820662766, 0.3216374269005848, 0.34502923976608185, 0.38011695906432746, 0.4074074074074074, 0.43079922027290446, 0.4249512670565302, 0.4249512670565302, 0.4269005847953216, 0.43079922027290446, 0.42884990253411304, 0.442495126705653, 0.4522417153996101, 0.4678362573099415, 0.49317738791423, 0.5282651072124757, 0.557504873294347, 0.5769980506822612, 0.5828460038986355, 0.543859649122807, 0.5321637426900585, 0.5282651072124757, 0.5321637426900585, 0.5633528265107213, 0.5692007797270955, 0.5614035087719298, 0.5380116959064327, 0.5185185185185185, 0.5185185185185185, 0.5243664717348928, 0.4951267056530214, 0.4873294346978557, 0.4853801169590643, 0.4853801169590643, 0.4873294346978557, 0.49317738791423, 0.48927875243664715, 0.4853801169590643, 0.47953216374269003, 0.48148148148148145, 0.48148148148148145, 0.47953216374269003, 0.47953216374269003, 0.47953216374269003, 0.47953216374269003, 0.48148148148148145, 0.4853801169590643, 0.4853801169590643, 0.4853801169590643, 0.48927875243664715, 0.48927875243664715, 0.5282651072124757, 0.5730994152046783, 0.6510721247563352, 0.6744639376218323, 0.8109161793372319, 0.8323586744639376, 0.8382066276803118, 0.8538011695906432, 0.8693957115009746, 0.8654970760233918, 0.8421052631578947, 0.8635477582846004, 0.8265107212475633, 0.8187134502923976, 0.8206627680311891, 0.8109161793372319, 0.8128654970760234, 0.8187134502923976, 0.8304093567251462, 0.8323586744639376, 0.8401559454191033, 0.8382066276803118, 0.834307992202729, 0.8382066276803118, 0.8401559454191033, 0.8421052631578947, 0.8401559454191033, 0.8421052631578947, 0.8538011695906432, 0.8576998050682261, 0.8557504873294347, 0.8732943469785575, 0.8654970760233918, 0.8654970760233918, 0.8635477582846004, 0.8538011695906432, 0.8576998050682261, 0.8576998050682261, 0.8557504873294347, 0.8557504873294347, 0.8557504873294347, 0.8576998050682261, 0.8635477582846004, 0.8635477582846004, 0.8635477582846004, 0.8654970760233918, 0.8615984405458089, 0.8752436647173489, 0.8810916179337231, 0.8810916179337231, 0.8791423001949318, 0.8830409356725146, 0.8830409356725146, 0.8869395711500975, 0.8888888888888888, 0.8927875243664717, 0.8908382066276803, 0.9044834307992202, 0.8966861598440545, 0.8947368421052632, 0.8908382066276803, 0.9005847953216374, 0.898635477582846, 0.9103313840155945, 0.9083820662768031, 0.9005847953216374, 0.8947368421052632, 0.9005847953216374, 0.8966861598440545, 0.8908382066276803, 0.8927875243664717, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8908382066276803, 0.8947368421052632, 0.898635477582846, 0.9083820662768031, 0.9122807017543859, 0.9181286549707602, 0.9298245614035088, 0.9317738791423001, 0.9200779727095516, 0.9161793372319688, 0.9181286549707602, 0.9161793372319688, 0.9122807017543859, 0.9103313840155945, 0.9064327485380117, 0.9025341130604289, 0.9064327485380117, 0.9025341130604289, 0.8966861598440545, 0.8947368421052632, 0.8966861598440545, 0.8966861598440545, 0.8947368421052632, 0.8927875243664717, 0.8908382066276803, 0.8908382066276803, 0.8908382066276803, 0.8908382066276803, 0.8908382066276803, 0.8908382066276803, 0.8908382066276803, 0.8908382066276803, 0.8927875243664717, 0.8947368421052632, 0.8947368421052632, 0.8927875243664717, 0.8927875243664717, 0.8947368421052632, 0.9064327485380117, 0.9142300194931774, 0.9181286549707602, 0.9278752436647173, 0.9395711500974658, 0.9415204678362573, 0.9395711500974658, 0.9395711500974658, 0.9415204678362573, 0.9434697855750487, 0.9473684210526315], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pex19.gap.json b/pfam_gap_rates/Pex19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aaba5649d036fa3f2ad1f15a46ed1389e004c05a
--- /dev/null
+++ b/pfam_gap_rates/Pex19.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage-tail_3.gap.json b/pfam_gap_rates/Phage-tail_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42aaeac6163c1573a52c77de7a8a54678465f4f1
--- /dev/null
+++ b/pfam_gap_rates/Phage-tail_3.gap.json
@@ -0,0 +1 @@
+{"family": "Phage-tail_3", "n_seqs": 291, "length": 188, "gap_rates": [0.8247422680412371, 0.5979381443298969, 0.4742268041237113, 0.281786941580756, 0.2027491408934708, 0.17525773195876287, 0.14776632302405499, 0.10996563573883161, 0.09965635738831616, 0.09621993127147767, 0.08934707903780069, 0.08934707903780069, 0.07216494845360824, 0.07216494845360824, 0.06872852233676977, 0.06872852233676977, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.06872852233676977, 0.06529209621993128, 0.06529209621993128, 0.06872852233676977, 0.058419243986254296, 0.054982817869415807, 0.05154639175257732, 0.048109965635738834, 0.054982817869415807, 0.048109965635738834, 0.05154639175257732, 0.054982817869415807, 0.05154639175257732, 0.8591065292096219, 0.9450171821305842, 0.9450171821305842, 0.9450171821305842, 0.6597938144329897, 0.05154639175257732, 0.05154639175257732, 0.048109965635738834, 0.06872852233676977, 0.05154639175257732, 0.048109965635738834, 0.044673539518900345, 0.044673539518900345, 0.044673539518900345, 0.048109965635738834, 0.044673539518900345, 0.041237113402061855, 0.041237113402061855, 0.041237113402061855, 0.041237113402061855, 0.054982817869415807, 0.24398625429553264, 0.9484536082474226, 0.24742268041237114, 0.9347079037800687, 0.9243986254295533, 0.3539518900343643, 0.7766323024054983, 0.2852233676975945, 0.07903780068728522, 0.054982817869415807, 0.041237113402061855, 0.027491408934707903, 0.027491408934707903, 0.07560137457044673, 0.020618556701030927, 0.013745704467353952, 0.024054982817869417, 0.024054982817869417, 0.01718213058419244, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.08247422680412371, 0.01718213058419244, 0.006872852233676976, 0.010309278350515464, 0.006872852233676976, 0.003436426116838488, 0.020618556701030927, 0.006872852233676976, 0.003436426116838488, 0.003436426116838488, 0.006872852233676976, 0.9037800687285223, 0.9140893470790378, 0.9415807560137457, 0.9037800687285223, 0.9003436426116839, 0.006872852233676976, 0.01718213058419244, 0.9484536082474226, 0.006872852233676976, 0.006872852233676976, 0.010309278350515464, 0.7319587628865979, 0.8384879725085911, 0.9278350515463918, 0.7525773195876289, 0.697594501718213, 0.0859106529209622, 0.027491408934707903, 0.006872852233676976, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.006872852233676976, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.010309278350515464, 0.01718213058419244, 0.01718213058419244, 0.013745704467353952, 0.16838487972508592, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.01718213058419244, 0.027491408934707903, 0.024054982817869417, 0.024054982817869417, 0.024054982817869417, 0.027491408934707903, 0.03436426116838488, 0.024054982817869417, 0.024054982817869417, 0.027491408934707903, 0.027491408934707903, 0.027491408934707903, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.03436426116838488, 0.03436426116838488, 0.041237113402061855, 0.17525773195876287, 0.17525773195876287, 0.6597938144329897, 0.9278350515463918, 0.7079037800687286, 0.5945017182130584, 0.16838487972508592, 0.20618556701030927, 0.19931271477663232, 0.21649484536082475, 0.21993127147766323, 0.2268041237113402, 0.24054982817869416, 0.2542955326460481, 0.28865979381443296, 0.3230240549828179, 0.3848797250859107, 0.6151202749140894, 0.8625429553264605], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_lysozyme.gap.json b/pfam_gap_rates/Phage_lysozyme.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6565f9ac93facccf9962e673edccf789bb068c3f
--- /dev/null
+++ b/pfam_gap_rates/Phage_lysozyme.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_lysozyme", "n_seqs": 474, "length": 147, "gap_rates": [0.5443037974683544, 0.21940928270042195, 0.1371308016877637, 0.10970464135021098, 0.09915611814345991, 0.08438818565400844, 0.08227848101265822, 0.7911392405063291, 0.8881856540084389, 0.8333333333333334, 0.7784810126582279, 0.3691983122362869, 0.14135021097046413, 0.1308016877637131, 0.09282700421940929, 0.08860759493670886, 0.09071729957805907, 0.10337552742616034, 0.0970464135021097, 0.09282700421940929, 0.08860759493670886, 0.08227848101265822, 0.620253164556962, 0.6729957805907173, 0.759493670886076, 0.7953586497890295, 0.8312236286919831, 0.9472573839662447, 0.8417721518987342, 0.820675105485232, 0.7805907172995781, 0.7046413502109705, 0.6329113924050633, 0.5759493670886076, 0.03164556962025317, 0.029535864978902954, 0.029535864978902954, 0.029535864978902954, 0.02531645569620253, 0.023206751054852322, 0.02531645569620253, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.0189873417721519, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.9367088607594937, 0.014767932489451477, 0.010548523206751054, 0.010548523206751054, 0.010548523206751054, 0.012658227848101266, 0.010548523206751054, 0.010548523206751054, 0.010548523206751054, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.05907172995780591, 0.8333333333333334, 0.8881856540084389, 0.9177215189873418, 0.9219409282700421, 0.9282700421940928, 0.919831223628692, 0.9113924050632911, 0.879746835443038, 0.6835443037974683, 0.49156118143459915, 0.04430379746835443, 0.02531645569620253, 0.02531645569620253, 0.023206751054852322, 0.02531645569620253, 0.023206751054852322, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.006329113924050633, 0.07383966244725738, 0.10337552742616034, 0.4704641350210971, 0.9367088607594937, 0.9451476793248945, 0.9472573839662447, 0.9388185654008439, 0.9324894514767933, 0.3649789029535865, 0.10759493670886076, 0.04852320675105485, 0.0379746835443038, 0.029535864978902954, 0.023206751054852322, 0.02109704641350211, 0.023206751054852322, 0.023206751054852322, 0.02531645569620253, 0.02531645569620253, 0.02109704641350211, 0.023206751054852322, 0.02531645569620253, 0.03164556962025317, 0.03375527426160337, 0.029535864978902954, 0.04008438818565401, 0.03164556962025317, 0.9493670886075949, 0.9472573839662447, 0.035864978902953586, 0.04008438818565401, 0.9493670886075949, 0.035864978902953586, 0.035864978902953586, 0.035864978902953586, 0.04008438818565401, 0.046413502109704644, 0.046413502109704644, 0.10970464135021098, 0.12869198312236288, 0.23839662447257384, 0.38396624472573837, 0.189873417721519, 0.9156118143459916, 0.9430379746835443, 0.9050632911392406, 0.12658227848101267, 0.12658227848101267, 0.12869198312236288, 0.14556962025316456, 0.16033755274261605, 0.16877637130801687, 0.18354430379746836, 0.20464135021097046, 0.2320675105485232, 0.2616033755274262, 0.4050632911392405, 0.8966244725738397], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_prot_Gp6.gap.json b/pfam_gap_rates/Phage_prot_Gp6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1f600868f09bcf19311ebd2d5e5f99c65ee8163
--- /dev/null
+++ b/pfam_gap_rates/Phage_prot_Gp6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PhdYeFM_antitox.gap.json b/pfam_gap_rates/PhdYeFM_antitox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53b02f952a05ce05dd84928d2923a73807cc0b0d
--- /dev/null
+++ b/pfam_gap_rates/PhdYeFM_antitox.gap.json
@@ -0,0 +1 @@
+{"family": "PhdYeFM_antitox", "n_seqs": 3096, "length": 76, "gap_rates": [0.5736434108527132, 0.39502583979328165, 0.1996124031007752, 0.09496124031007752, 0.06621447028423773, 0.056847545219638244, 0.0481266149870801, 0.042312661498708014, 0.03972868217054264, 0.03617571059431524, 0.05910852713178295, 0.0332687338501292, 0.025839793281653745, 0.02487080103359173, 0.02422480620155039, 0.02260981912144703, 0.020025839793281652, 0.01808785529715762, 0.01776485788113695, 0.01808785529715762, 0.015503875968992248, 0.012919896640826873, 0.07235142118863049, 0.06847545219638243, 0.09140826873385013, 0.4428294573643411, 0.004521963824289405, 0.0029069767441860465, 0.001614987080103359, 0.001937984496124031, 0.001614987080103359, 0.0022609819121447027, 0.002583979328165375, 0.002583979328165375, 0.03229974160206718, 0.021640826873385012, 0.004198966408268734, 0.005813953488372093, 0.008074935400516795, 0.020671834625323, 0.025516795865633074, 0.04198966408268734, 0.9483204134366925, 0.9412144702842378, 0.0872093023255814, 0.1375968992248062, 0.1740956072351421, 0.1857235142118863, 0.19799741602067183, 0.21382428940568476, 0.22512919896640826, 0.2351421188630491, 0.6766795865633075, 0.30749354005167956, 0.3104005167958656, 0.3220284237726098, 0.3359173126614987, 0.3488372093023256, 0.3636950904392765, 0.37887596899224807, 0.395671834625323, 0.40891472868217055, 0.4273255813953488, 0.44541343669250644, 0.4635012919896641, 0.48417312661498707, 0.5080749354005168, 0.5348837209302325, 0.5636304909560723, 0.6715116279069767, 0.6954134366925064, 0.7351421188630491, 0.7816537467700259, 0.8265503875968992, 0.8633720930232558, 0.9050387596899225], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhnA.gap.json b/pfam_gap_rates/PhnA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba5b673e94908246c944be854dc20e6c64594fde
--- /dev/null
+++ b/pfam_gap_rates/PhnA.gap.json
@@ -0,0 +1 @@
+{"family": "PhnA", "n_seqs": 629, "length": 71, "gap_rates": [0.2527821939586645, 0.022257551669316374, 0.006359300476947536, 0.006359300476947536, 0.006359300476947536, 0.006359300476947536, 0.006359300476947536, 0.006359300476947536, 0.006359300476947536, 0.006359300476947536, 0.0047694753577106515, 0.0047694753577106515, 0.0047694753577106515, 0.0047694753577106515, 0.0047694753577106515, 0.0047694753577106515, 0.0047694753577106515, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.011128775834658187, 0.012718600953895072, 0.00794912559618442, 0.006359300476947536, 0.001589825119236884, 0.006359300476947536, 0.02384737678855326, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.0047694753577106515, 0.00794912559618442, 0.0047694753577106515, 0.0047694753577106515, 0.0047694753577106515, 0.0047694753577106515, 0.0047694753577106515, 0.006359300476947536, 0.00794912559618442, 0.7980922098569158, 0.4594594594594595, 0.012718600953895072, 0.01589825119236884, 0.8998410174880763, 0.28298887122416533, 0.009538950715421303, 0.02066772655007949, 0.006359300476947536, 0.006359300476947536, 0.006359300476947536, 0.02066772655007949, 0.02066772655007949, 0.019077901430842606, 0.02066772655007949, 0.27821939586645467, 0.00794912559618442, 0.00794912559618442, 0.00794912559618442, 0.00794912559618442, 0.00794912559618442, 0.00794912559618442, 0.00794912559618442, 0.00794912559618442, 0.00794912559618442, 0.00794912559618442, 0.011128775834658187, 0.014308426073131956, 0.28298887122416533], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhnA_Zn_Ribbon.gap.json b/pfam_gap_rates/PhnA_Zn_Ribbon.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a63275198938d0f1202ec66e92d431f73bc60ab
--- /dev/null
+++ b/pfam_gap_rates/PhnA_Zn_Ribbon.gap.json
@@ -0,0 +1 @@
+{"family": "PhnA_Zn_Ribbon", "n_seqs": 439, "length": 42, "gap_rates": [0.6241457858769932, 0.23917995444191345, 0.12984054669703873, 0.04555808656036447, 0.002277904328018223, 0.002277904328018223, 0.002277904328018223, 0.002277904328018223, 0.002277904328018223, 0.002277904328018223, 0.004555808656036446, 0.002277904328018223, 0.002277904328018223, 0.0, 0.8929384965831435, 0.89749430523918, 0.8997722095671982, 0.8997722095671982, 0.8997722095671982, 0.9157175398633257, 0.9043280182232346, 0.8997722095671982, 0.8997722095671982, 0.8997722095671982, 0.89749430523918, 0.8747152619589977, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002277904328018223, 0.002277904328018223, 0.02050113895216401, 0.26879271070615035], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhoD_N.gap.json b/pfam_gap_rates/PhoD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7888a0e7a24321cafec20907f393a167d990417
--- /dev/null
+++ b/pfam_gap_rates/PhoD_N.gap.json
@@ -0,0 +1 @@
+{"family": "PhoD_N", "n_seqs": 635, "length": 126, "gap_rates": [0.23622047244094488, 0.06141732283464567, 0.048818897637795275, 0.03937007874015748, 0.028346456692913385, 0.01732283464566929, 0.01732283464566929, 0.01732283464566929, 0.01732283464566929, 0.01732283464566929, 0.01732283464566929, 0.01732283464566929, 0.015748031496062992, 0.014173228346456693, 0.014173228346456693, 0.014173228346456693, 0.014173228346456693, 0.012598425196850394, 0.012598425196850394, 0.012598425196850394, 0.2346456692913386, 0.231496062992126, 0.22992125984251968, 0.24251968503937008, 0.247244094488189, 0.4283464566929134, 0.45984251968503936, 0.48031496062992124, 0.7622047244094489, 0.8818897637795275, 0.8929133858267716, 0.8960629921259843, 0.8992125984251969, 0.9007874015748032, 0.9007874015748032, 0.9007874015748032, 0.905511811023622, 0.9165354330708662, 0.9133858267716536, 0.9023622047244094, 0.9007874015748032, 0.9007874015748032, 0.9007874015748032, 0.8992125984251969, 0.8929133858267716, 0.8929133858267716, 0.7874015748031497, 0.5622047244094488, 0.47401574803149604, 0.4440944881889764, 0.38110236220472443, 0.014173228346456693, 0.012598425196850394, 0.011023622047244094, 0.011023622047244094, 0.011023622047244094, 0.011023622047244094, 0.009448818897637795, 0.009448818897637795, 0.009448818897637795, 0.009448818897637795, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.9480314960629921, 0.9480314960629921, 0.012598425196850394, 0.012598425196850394, 0.011023622047244094, 0.011023622047244094, 0.02047244094488189, 0.015748031496062992, 0.006299212598425197, 0.006299212598425197, 0.0031496062992125984, 0.0031496062992125984, 0.004724409448818898, 0.006299212598425197, 0.007874015748031496, 0.004724409448818898, 0.0031496062992125984, 0.007874015748031496, 0.0031496062992125984, 0.0031496062992125984, 0.004724409448818898, 0.007874015748031496, 0.009448818897637795, 0.006299212598425197, 0.009448818897637795, 0.009448818897637795, 0.009448818897637795, 0.009448818897637795, 0.009448818897637795, 0.007874015748031496, 0.009448818897637795, 0.009448818897637795, 0.011023622047244094, 0.012598425196850394, 0.014173228346456693, 0.014173228346456693, 0.014173228346456693, 0.015748031496062992, 0.015748031496062992, 0.7889763779527559, 0.8393700787401575, 0.9181102362204724, 0.8692913385826772, 0.8188976377952756, 0.6330708661417322, 0.01732283464566929, 0.048818897637795275, 0.029921259842519685, 0.7968503937007874, 0.04094488188976378, 0.03937007874015748, 0.04566929133858268, 0.05196850393700787, 0.05196850393700787, 0.8755905511811024, 0.05196850393700787, 0.05511811023622047, 0.05826771653543307, 0.06929133858267716, 0.08818897637795275], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phospholip_A2_2.gap.json b/pfam_gap_rates/Phospholip_A2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e711dbdcd9eca09a49da6ed592a30b03bf2dbe5
--- /dev/null
+++ b/pfam_gap_rates/Phospholip_A2_2.gap.json
@@ -0,0 +1 @@
+{"family": "Phospholip_A2_2", "n_seqs": 215, "length": 97, "gap_rates": [0.5348837209302325, 0.2651162790697674, 0.20930232558139536, 0.16744186046511628, 0.15813953488372093, 0.15348837209302327, 0.15348837209302327, 0.15348837209302327, 0.15348837209302327, 0.15348837209302327, 0.15348837209302327, 0.14883720930232558, 0.15348837209302327, 0.14883720930232558, 0.13953488372093023, 0.13023255813953488, 0.13488372093023257, 0.12093023255813953, 0.11627906976744186, 0.11162790697674418, 0.11627906976744186, 0.10697674418604651, 0.10232558139534884, 0.09767441860465116, 0.09767441860465116, 0.09302325581395349, 0.08837209302325581, 0.07906976744186046, 0.07906976744186046, 0.07441860465116279, 0.06046511627906977, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.9441860465116279, 0.05116279069767442, 0.05116279069767442, 0.06511627906976744, 0.05581395348837209, 0.05581395348837209, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.046511627906976744, 0.037209302325581395, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.037209302325581395, 0.037209302325581395, 0.046511627906976744, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.08372093023255814, 0.08837209302325581, 0.10697674418604651, 0.11162790697674418, 0.11627906976744186, 0.12093023255813953, 0.12558139534883722, 0.12093023255813953, 0.12093023255813953, 0.12093023255813953, 0.13023255813953488, 0.13488372093023257, 0.13488372093023257, 0.14418604651162792, 0.14418604651162792, 0.13488372093023257, 0.13488372093023257, 0.13953488372093023, 0.13488372093023257, 0.13488372093023257, 0.13488372093023257, 0.13023255813953488, 0.13953488372093023, 0.19069767441860466, 0.14418604651162792, 0.14418604651162792, 0.14418604651162792, 0.14418604651162792, 0.14418604651162792, 0.14418604651162792, 0.17674418604651163, 0.4558139534883721], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phospholip_B.gap.json b/pfam_gap_rates/Phospholip_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3128ae42b85944ee8eea87d3a111be4e5da89b08
--- /dev/null
+++ b/pfam_gap_rates/Phospholip_B.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phosphorylase.gap.json b/pfam_gap_rates/Phosphorylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c46849b56f528d2b328f065aa35f9d3f5f78dc24
--- /dev/null
+++ b/pfam_gap_rates/Phosphorylase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PhyH.gap.json b/pfam_gap_rates/PhyH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7613a60c20fb2c2653620c63c530a11a26f9ab3e
--- /dev/null
+++ b/pfam_gap_rates/PhyH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phytase-like.gap.json b/pfam_gap_rates/Phytase-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc3fb0aba47c754ea3b46735f95f5568b8954f10
--- /dev/null
+++ b/pfam_gap_rates/Phytase-like.gap.json
@@ -0,0 +1 @@
+{"family": "Phytase-like", "n_seqs": 737, "length": 482, "gap_rates": [0.757123473541384, 0.412483039348711, 0.24151967435549526, 0.19131614654002713, 0.17503392130257803, 0.1614654002713704, 0.9158751696065129, 0.12754409769335143, 0.1248303934871099, 0.12075983717774763, 0.12075983717774763, 0.12075983717774763, 0.11804613297150611, 0.37720488466757124, 0.9050203527815468, 0.7639077340569878, 0.14925373134328357, 0.09769335142469471, 0.06377204884667571, 0.06105834464043419, 0.06105834464043419, 0.06105834464043419, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.8276797829036635, 0.5115332428765265, 0.4287652645861601, 0.9253731343283582, 0.9389416553595658, 0.7150610583446404, 0.383989145183175, 0.31614654002713705, 0.28222523744911804, 0.2727272727272727, 0.07598371777476255, 0.07327001356852103, 0.06919945725915876, 0.07327001356852103, 0.07327001356852103, 0.07191316146540028, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PhzC-PhzF.gap.json b/pfam_gap_rates/PhzC-PhzF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..784395669beaf265c905aa1b86c8a3ee8f63bc70
--- /dev/null
+++ b/pfam_gap_rates/PhzC-PhzF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PigN.gap.json b/pfam_gap_rates/PigN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4758ec52a7d36982836b867f2dc28f526c4fefb
--- /dev/null
+++ b/pfam_gap_rates/PigN.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PilJ.gap.json b/pfam_gap_rates/PilJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08b240df1e6a7c7a6d49c70d77cd08589081516f
--- /dev/null
+++ b/pfam_gap_rates/PilJ.gap.json
@@ -0,0 +1 @@
+{"family": "PilJ", "n_seqs": 558, "length": 126, "gap_rates": [0.8853046594982079, 0.7634408602150538, 0.6433691756272402, 0.5519713261648745, 0.45340501792114696, 0.35842293906810035, 0.30824372759856633, 0.24731182795698925, 0.2060931899641577, 0.12544802867383512, 0.08602150537634409, 0.06093189964157706, 0.05017921146953405, 0.04838709677419355, 0.03763440860215054, 0.023297491039426525, 0.023297491039426525, 0.016129032258064516, 0.014336917562724014, 0.014336917562724014, 0.005376344086021506, 0.005376344086021506, 0.0035842293906810036, 0.0017921146953405018, 0.0017921146953405018, 0.0017921146953405018, 0.0017921146953405018, 0.22580645161290322, 0.20967741935483872, 0.2114695340501792, 0.17562724014336917, 0.15770609318996415, 0.14157706093189965, 0.1111111111111111, 0.12365591397849462, 0.13440860215053763, 0.10752688172043011, 0.8422939068100358, 0.9336917562724014, 0.7849462365591398, 0.6129032258064516, 0.43010752688172044, 0.33512544802867383, 0.043010752688172046, 0.021505376344086023, 0.017921146953405017, 0.014336917562724014, 0.014336917562724014, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.014336917562724014, 0.014336917562724014, 0.014336917562724014, 0.012544802867383513, 0.012544802867383513, 0.014336917562724014, 0.014336917562724014, 0.017921146953405017, 0.017921146953405017, 0.017921146953405017, 0.01971326164874552, 0.043010752688172046, 0.03942652329749104, 0.05197132616487455, 0.05555555555555555, 0.06810035842293907, 0.06451612903225806, 0.16666666666666666, 0.26344086021505375, 0.24014336917562723, 0.24551971326164876, 0.22580645161290322, 0.22043010752688172, 0.3279569892473118, 0.4103942652329749, 0.8530465949820788, 0.9175627240143369, 0.931899641577061, 0.942652329749104, 0.9354838709677419, 0.9229390681003584, 0.9050179211469535, 0.5286738351254481, 0.10931899641577061, 0.11648745519713262, 0.1111111111111111, 0.1111111111111111, 0.11290322580645161, 0.11827956989247312, 0.12903225806451613, 0.13799283154121864, 0.14336917562724014, 0.14516129032258066, 0.14516129032258066, 0.14874551971326164, 0.15232974910394265, 0.15591397849462366, 0.16487455197132617, 0.17562724014336917, 0.18100358422939067, 0.1953405017921147, 0.20430107526881722, 0.2132616487455197, 0.931899641577061, 0.9086021505376344, 0.37992831541218636, 0.4032258064516129, 0.3942652329749104, 0.3888888888888889, 0.36917562724014336, 0.3942652329749104, 0.41935483870967744, 0.44623655913978494, 0.48566308243727596, 0.5591397849462365, 0.600358422939068, 0.6559139784946236, 0.7096774193548387, 0.7526881720430108, 0.7992831541218638, 0.8333333333333334, 0.8691756272401434, 0.9050179211469535], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PilX_N.gap.json b/pfam_gap_rates/PilX_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e2506ead1999b92395a11b0836eb8f780ef344c
--- /dev/null
+++ b/pfam_gap_rates/PilX_N.gap.json
@@ -0,0 +1 @@
+{"family": "PilX_N", "n_seqs": 241, "length": 52, "gap_rates": [0.22821576763485477, 0.04979253112033195, 0.04149377593360996, 0.024896265560165973, 0.9377593360995851, 0.024896265560165973, 0.016597510373443983, 0.016597510373443983, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004149377593360996, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.02074688796680498, 0.02074688796680498, 0.024896265560165973, 0.029045643153526972, 0.024896265560165973, 0.07053941908713693, 0.12033195020746888, 0.1991701244813278, 0.5352697095435685], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pilin_N.gap.json b/pfam_gap_rates/Pilin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a9be4840a9394180e171020a9e0cabeb5bfd8f6
--- /dev/null
+++ b/pfam_gap_rates/Pilin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Pilin_N", "n_seqs": 199, "length": 103, "gap_rates": [0.2964824120603015, 0.11055276381909548, 0.10552763819095477, 0.09045226130653267, 0.08040201005025126, 0.07035175879396985, 0.05025125628140704, 0.04522613065326633, 0.04020100502512563, 0.03015075376884422, 0.03015075376884422, 0.010050251256281407, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.0, 0.0, 0.0, 0.0, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.0, 0.0, 0.0, 0.0, 0.9246231155778895, 0.6482412060301508, 0.23618090452261306, 0.035175879396984924, 0.020100502512562814, 0.01507537688442211, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.010050251256281407, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.9447236180904522, 0.949748743718593, 0.949748743718593, 0.949748743718593, 0.949748743718593, 0.949748743718593, 0.949748743718593, 0.9447236180904522, 0.9396984924623115, 0.21105527638190955, 0.17587939698492464, 0.11557788944723618, 0.8894472361809045, 0.9396984924623115, 0.8442211055276382, 0.06532663316582915, 0.08040201005025126, 0.06532663316582915, 0.06030150753768844, 0.07035175879396985, 0.12060301507537688, 0.27638190954773867, 0.5477386934673367, 0.5728643216080402, 0.5276381909547738, 0.44221105527638194, 0.7738693467336684, 0.8743718592964824, 0.9095477386934674, 0.9447236180904522, 0.9296482412060302, 0.9045226130653267, 0.8542713567839196, 0.7035175879396985, 0.05527638190954774, 0.04522613065326633, 0.05025125628140704, 0.05025125628140704, 0.06030150753768844, 0.07035175879396985, 0.07035175879396985, 0.10552763819095477, 0.08542713567839195, 0.08040201005025126, 0.10050251256281408, 0.10050251256281408, 0.11557788944723618, 0.9195979899497487, 0.135678391959799, 0.135678391959799, 0.1507537688442211, 0.16080402010050251, 0.1658291457286432, 0.18592964824120603, 0.2613065326633166, 0.3316582914572864, 0.49246231155778897, 0.6633165829145728, 0.8291457286432161], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pkr1.gap.json b/pfam_gap_rates/Pkr1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..893d0734903c95b10a51fa5af5509a8686233bbb
--- /dev/null
+++ b/pfam_gap_rates/Pkr1.gap.json
@@ -0,0 +1 @@
+{"family": "Pkr1", "n_seqs": 147, "length": 75, "gap_rates": [0.673469387755102, 0.3877551020408163, 0.29931972789115646, 0.2653061224489796, 0.2108843537414966, 0.1564625850340136, 0.10884353741496598, 0.05442176870748299, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.02040816326530612, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.8503401360544217, 0.7891156462585034, 0.013605442176870748, 0.006802721088435374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006802721088435374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5782312925170068, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013605442176870748, 0.02040816326530612, 0.05442176870748299, 0.061224489795918366, 0.07482993197278912, 0.08163265306122448, 0.10204081632653061, 0.11564625850340136, 0.16326530612244897, 0.24489795918367346, 0.41496598639455784], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Plug.gap.json b/pfam_gap_rates/Plug.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1fb6808a6e53e4721900f40d5c1435c3e7c7917
--- /dev/null
+++ b/pfam_gap_rates/Plug.gap.json
@@ -0,0 +1 @@
+{"family": "Plug", "n_seqs": 5000, "length": 137, "gap_rates": [0.6598, 0.3986, 0.274, 0.2208, 0.186, 0.1616, 0.144, 0.1268, 0.1138, 0.1008, 0.0902, 0.0834, 0.0814, 0.0776, 0.075, 0.0722, 0.0744, 0.0698, 0.0622, 0.9122, 0.056, 0.0302, 0.0254, 0.0218, 0.0204, 0.0192, 0.0182, 0.017, 0.0166, 0.0154, 0.0142, 0.7024, 0.0148, 0.0134, 0.0132, 0.0162, 0.0168, 0.254, 0.845, 0.9288, 0.9458, 0.8976, 0.655, 0.4552, 0.144, 0.1332, 0.077, 0.0606, 0.0532, 0.0172, 0.0124, 0.0116, 0.0114, 0.0112, 0.01, 0.0082, 0.0072, 0.007, 0.007, 0.0072, 0.0968, 0.1058, 0.5298, 0.6444, 0.8506, 0.902, 0.883, 0.822, 0.5386, 0.5032, 0.0376, 0.005, 0.0046, 0.0042, 0.0046, 0.0032, 0.0028, 0.003, 0.003, 0.0032, 0.0318, 0.1692, 0.3252, 0.3894, 0.6864, 0.7862, 0.8416, 0.8752, 0.8984, 0.9384, 0.9482, 0.914, 0.8874, 0.8638, 0.8286, 0.762, 0.5976, 0.3632, 0.3266, 0.2866, 0.1534, 0.0384, 0.0116, 0.0066, 0.0044, 0.0062, 0.004, 0.0038, 0.0044, 0.0064, 0.0056, 0.0034, 0.0036, 0.0034, 0.0036, 0.0038, 0.0042, 0.0044, 0.0048, 0.0058, 0.8042, 0.072, 0.0116, 0.0152, 0.0192, 0.0286, 0.9444, 0.0304, 0.0324, 0.0352, 0.076, 0.0646, 0.0892, 0.1, 0.1126, 0.1434, 0.2902], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Plug_translocon.gap.json b/pfam_gap_rates/Plug_translocon.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0181a3a83febb42fb0c8e0b36c5faefee3037f96
--- /dev/null
+++ b/pfam_gap_rates/Plug_translocon.gap.json
@@ -0,0 +1 @@
+{"family": "Plug_translocon", "n_seqs": 510, "length": 35, "gap_rates": [0.11960784313725491, 0.041176470588235294, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.045098039215686274, 0.029411764705882353, 0.025490196078431372, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.01764705882352941, 0.01764705882352941, 0.013725490196078431, 0.09215686274509804, 0.00980392156862745, 0.00392156862745098, 0.00392156862745098, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.021568627450980392, 0.041176470588235294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pol_alpha_B_N.gap.json b/pfam_gap_rates/Pol_alpha_B_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47928259ced2922c6ab91a6d2d2a660074822a1a
--- /dev/null
+++ b/pfam_gap_rates/Pol_alpha_B_N.gap.json
@@ -0,0 +1 @@
+{"family": "Pol_alpha_B_N", "n_seqs": 222, "length": 295, "gap_rates": [0.7252252252252253, 0.4099099099099099, 0.34234234234234234, 0.2927927927927928, 0.2882882882882883, 0.28378378378378377, 0.27927927927927926, 0.27927927927927926, 0.26576576576576577, 0.26576576576576577, 0.26576576576576577, 0.26576576576576577, 0.26576576576576577, 0.26576576576576577, 0.26576576576576577, 0.26576576576576577, 0.26126126126126126, 0.25675675675675674, 0.25225225225225223, 0.25225225225225223, 0.25225225225225223, 0.25225225225225223, 0.25225225225225223, 0.24774774774774774, 0.24324324324324326, 0.24324324324324326, 0.24324324324324326, 0.24324324324324326, 0.24324324324324326, 0.24324324324324326, 0.43243243243243246, 0.34234234234234234, 0.2882882882882883, 0.30180180180180183, 0.26576576576576577, 0.28378378378378377, 0.26576576576576577, 0.24774774774774774, 0.6486486486486487, 0.23423423423423423, 0.22972972972972974, 0.22972972972972974, 0.22972972972972974, 0.22972972972972974, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Polyketide_cyc.gap.json b/pfam_gap_rates/Polyketide_cyc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c22bda19db410e3bfae7693d3599c824f461904
--- /dev/null
+++ b/pfam_gap_rates/Polyketide_cyc.gap.json
@@ -0,0 +1 @@
+{"family": "Polyketide_cyc", "n_seqs": 1701, "length": 171, "gap_rates": [0.34509112286890065, 0.2257495590828924, 0.13521457965902411, 0.08818342151675485, 0.07113462669018225, 0.053497942386831275, 0.047031158142269255, 0.02821869488536155, 0.027630805408583186, 0.022339800117577895, 0.021164021164021163, 0.019988242210464434, 0.019400352733686066, 0.018224573780129337, 0.018224573780129337, 0.018224573780129337, 0.018224573780129337, 0.018224573780129337, 0.018224573780129337, 0.018224573780129337, 0.01763668430335097, 0.017048794826572605, 0.017048794826572605, 0.01763668430335097, 0.01646090534979424, 0.01646090534979424, 0.02586713697824809, 0.023515579071134628, 0.02292768959435626, 0.02175191064079953, 0.021164021164021163, 0.0205761316872428, 0.018224573780129337, 0.0188124632569077, 0.018224573780129337, 0.10170487948265726, 0.7648442092886537, 0.8888888888888888, 0.842445620223398, 0.6778365667254557, 0.2292768959435626, 0.26807760141093473, 0.25925925925925924, 0.1610817166372722, 0.8095238095238095, 0.8565549676660787, 0.9018224573780129, 0.9223985890652557, 0.934156378600823, 0.9394473838918284, 0.9282774838330394, 0.914756025867137, 0.8877131099353321, 0.8371546149323927, 0.7936507936507936, 0.07995296884185774, 0.08583186360964139, 0.07172251616696061, 0.036449147560258674, 0.02821869488536155, 0.024691358024691357, 0.022339800117577895, 0.02292768959435626, 0.021164021164021163, 0.0205761316872428, 0.021164021164021163, 0.022339800117577895, 0.02175191064079953, 0.02175191064079953, 0.022339800117577895, 0.023515579071134628, 0.023515579071134628, 0.0376249265138154, 0.031746031746031744, 0.029982363315696647, 0.029394473838918283, 0.029394473838918283, 0.031746031746031744, 0.02586713697824809, 0.7736625514403292, 0.8212815990593768, 0.8883009994121105, 0.9012345679012346, 0.9294532627865961, 0.9365079365079365, 0.934156378600823, 0.9271017048794826, 0.8947677836566725, 0.8718400940623163, 0.8106995884773662, 0.5355673133450911, 0.27630805408583187, 0.2739564961787184, 0.27042915931804823, 0.25808348030570255, 0.2533803644914756, 0.24926513815402704, 0.2516166960611405, 0.26513815402704294, 0.24632569077013522, 0.24338624338624337, 0.24162257495590828, 0.23985890652557318, 0.23691945914168136, 0.024103468547912992, 0.02292768959435626, 0.022339800117577895, 0.02175191064079953, 0.02175191064079953, 0.021164021164021163, 0.029394473838918283, 0.029982363315696647, 0.02821869488536155, 0.048206937095825984, 0.3862433862433862, 0.8835978835978836, 0.9459141681363904, 0.8377425044091711, 0.6172839506172839, 0.6637272192827748, 0.5726043503821282, 0.7119341563786008, 0.7372134038800705, 0.7495590828924162, 0.7730746619635509, 0.8283362727807172, 0.9206349206349206, 0.7977660199882423, 0.7560258671369783, 0.7448559670781894, 0.733098177542622, 0.6907701352145796, 0.09053497942386832, 0.047619047619047616, 0.06701940035273368, 0.0376249265138154, 0.02880658436213992, 0.02821869488536155, 0.02821869488536155, 0.029394473838918283, 0.030570252792475015, 0.04526748971193416, 0.047619047619047616, 0.0376249265138154, 0.17166372721928277, 0.09288653733098177, 0.07289829512051735, 0.07466196355085244, 0.07760141093474426, 0.06643151087595532, 0.06584362139917696, 0.07054673721340388, 0.07642563198118754, 0.08700764256319812, 0.09876543209876543, 0.1128747795414462, 0.12463256907701352, 0.13168724279835392, 0.1387419165196943, 0.14520870076425632, 0.1557907113462669, 0.16696061140505586, 0.18224573780129336, 0.19988242210464433, 0.21340388007054673, 0.2498530276308054, 0.2933568489124045, 0.33803644914756026, 0.36684303350970016, 0.3921222810111699, 0.7189888300999412], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Polysacc_deac_1.gap.json b/pfam_gap_rates/Polysacc_deac_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0badf32de93e0ab68558ccc75643fd5faa04fd43
--- /dev/null
+++ b/pfam_gap_rates/Polysacc_deac_1.gap.json
@@ -0,0 +1 @@
+{"family": "Polysacc_deac_1", "n_seqs": 5000, "length": 183, "gap_rates": [0.915, 0.7206, 0.537, 0.4028, 0.3154, 0.2714, 0.2392, 0.2148, 0.205, 0.1986, 0.1882, 0.172, 0.1418, 0.1328, 0.1148, 0.1036, 0.9212, 0.939, 0.9316, 0.631, 0.0938, 0.0636, 0.045, 0.0386, 0.0368, 0.0338, 0.0304, 0.029, 0.0278, 0.027, 0.0262, 0.0256, 0.027, 0.027, 0.0226, 0.02, 0.0192, 0.0176, 0.017, 0.0164, 0.0162, 0.0156, 0.0158, 0.0158, 0.0214, 0.0194, 0.9144, 0.9428, 0.8894, 0.0182, 0.027, 0.0322, 0.0286, 0.7134, 0.7364, 0.7984, 0.827, 0.8588, 0.869, 0.8838, 0.9, 0.9174, 0.9216, 0.9258, 0.9272, 0.9284, 0.9298, 0.9318, 0.9348, 0.9366, 0.938, 0.94, 0.9426, 0.945, 0.9434, 0.9416, 0.9398, 0.937, 0.9358, 0.9342, 0.93, 0.9292, 0.9278, 0.9268, 0.9232, 0.9182, 0.9108, 0.8952, 0.8748, 0.8646, 0.842, 0.8164, 0.778, 0.7274, 0.7068, 0.0418, 0.0166, 0.0116, 0.0104, 0.0096, 0.009, 0.009, 0.009, 0.0166, 0.0088, 0.0202, 0.8744, 0.0104, 0.0078, 0.0076, 0.0086, 0.0098, 0.0112, 0.0106, 0.01, 0.0118, 0.0134, 0.0132, 0.0132, 0.0216, 0.8648, 0.8874, 0.9202, 0.9308, 0.9484, 0.9246, 0.9092, 0.8826, 0.8162, 0.0208, 0.0222, 0.0262, 0.0246, 0.026, 0.025, 0.9498, 0.0234, 0.022, 0.0192, 0.0182, 0.018, 0.018, 0.0194, 0.0212, 0.0216, 0.0226, 0.023, 0.0246, 0.0298, 0.0282, 0.0294, 0.069, 0.0442, 0.0412, 0.041, 0.8682, 0.041, 0.036, 0.0314, 0.0318, 0.0358, 0.0468, 0.0582, 0.0694, 0.0706, 0.0704, 0.0794, 0.097, 0.1134, 0.1338, 0.149, 0.1668, 0.2196, 0.2276, 0.2428, 0.2608, 0.2814, 0.3072, 0.3372, 0.3542, 0.3812, 0.4584, 0.6572], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Polysacc_syn_2C.gap.json b/pfam_gap_rates/Polysacc_syn_2C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d885b072770463a5f4e4569d60f37144c0ac735
--- /dev/null
+++ b/pfam_gap_rates/Polysacc_syn_2C.gap.json
@@ -0,0 +1 @@
+{"family": "Polysacc_syn_2C", "n_seqs": 187, "length": 48, "gap_rates": [0.03208556149732621, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.0213903743315508, 0.0106951871657754, 0.0106951871657754, 0.0053475935828877, 0.0053475935828877, 0.016042780748663103, 0.0053475935828877, 0.0053475935828877, 0.0106951871657754, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0, 0.0213903743315508, 0.026737967914438502, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0053475935828877, 0.0106951871657754, 0.026737967914438502, 0.053475935828877004, 0.13903743315508021], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Polysacc_synt_C.gap.json b/pfam_gap_rates/Polysacc_synt_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdbe37b049a9741a6bbe510ded39b83cfd6f5263
--- /dev/null
+++ b/pfam_gap_rates/Polysacc_synt_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Porin_10.gap.json b/pfam_gap_rates/Porin_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5391fc8f50f1828e2682ccc592744bcd46a524a2
--- /dev/null
+++ b/pfam_gap_rates/Porin_10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Porphobil_deamC.gap.json b/pfam_gap_rates/Porphobil_deamC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b796181a3ec413034e4d0709ce4e5f6b3adaf22f
--- /dev/null
+++ b/pfam_gap_rates/Porphobil_deamC.gap.json
@@ -0,0 +1 @@
+{"family": "Porphobil_deamC", "n_seqs": 1697, "length": 85, "gap_rates": [0.5156157925751326, 0.15556865055981142, 0.06069534472598703, 0.015910430170889805, 0.008249852681202121, 0.008249852681202121, 0.0076605774896876845, 0.00648202710665881, 0.00648202710665881, 0.005303476723629935, 0.0058927519151443725, 0.005303476723629935, 0.005303476723629935, 0.0041249263406010605, 0.0041249263406010605, 0.0041249263406010605, 0.0041249263406010605, 0.0041249263406010605, 0.0035356511490866236, 0.0029463759575721863, 0.0035356511490866236, 0.0035356511490866236, 0.0041249263406010605, 0.004714201532115498, 0.005303476723629935, 0.00648202710665881, 0.024160282852091926, 0.022392457277548614, 0.9481437831467295, 0.7913965822038892, 0.024749558043606363, 0.0901591043017089, 0.03771361225692398, 0.8697701826753094, 0.9133765468473777, 0.9499116087212728, 0.9322333529758398, 0.8856806128461991, 0.859752504419564, 0.6753093694755451, 0.0347672362993518, 0.024749558043606363, 0.021803182086034177, 0.022981732469063054, 0.024160282852091926, 0.025338833235120803, 0.030053034767236298, 0.02946375957572186, 0.02592810842663524, 0.02592810842663524, 0.026517383618149676, 0.026517383618149676, 0.07365939893930465, 0.11431938715380083, 0.7601649970536241, 0.642899233942251, 0.04832056570418385, 0.04714201532115498, 0.04890984089569829, 0.05362404242781379, 0.060106069534472596, 0.06894519740718916, 0.08249852681202122, 0.08662345315262228, 0.8479670005892752, 0.9328226281673542, 0.9027695934001179, 0.7625220978196818, 0.24808485562757807, 0.23040659988214496, 0.10548025928108426, 0.10017678255745432, 0.09487330583382439, 0.09605185621685328, 0.09723040659988215, 0.09781968179139658, 0.10076605774896877, 0.10194460813199764, 0.10312315851502651, 0.1060695344725987, 0.11314083677077195, 0.12197996464348851, 0.14437242192103714, 0.16971125515615793, 0.26988803771361225], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Presenilin.gap.json b/pfam_gap_rates/Presenilin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d500a4d7ef790991fe36cca59330542c425aadf8
--- /dev/null
+++ b/pfam_gap_rates/Presenilin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pro_CA.gap.json b/pfam_gap_rates/Pro_CA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f341651562b15a3e394397f5604fc0e48a56c78
--- /dev/null
+++ b/pfam_gap_rates/Pro_CA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pro_dh.gap.json b/pfam_gap_rates/Pro_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb2adfa2335ebf33e0aca64566fc63e9201dcf83
--- /dev/null
+++ b/pfam_gap_rates/Pro_dh.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Prok-RING_4.gap.json b/pfam_gap_rates/Prok-RING_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25c1ea4c134c83746cd00466912c9ae40adb9b32
--- /dev/null
+++ b/pfam_gap_rates/Prok-RING_4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Prophage_tail.gap.json b/pfam_gap_rates/Prophage_tail.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5bd8b59061d8dec0463e5021a204be735dafdb9
--- /dev/null
+++ b/pfam_gap_rates/Prophage_tail.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PrpF.gap.json b/pfam_gap_rates/PrpF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4397f907a4f8dcbccfeb9716074160078f1b6ad
--- /dev/null
+++ b/pfam_gap_rates/PrpF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PsaD.gap.json b/pfam_gap_rates/PsaD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70bc870b6c508fc828e1421bfbba913b7a5685c7
--- /dev/null
+++ b/pfam_gap_rates/PsaD.gap.json
@@ -0,0 +1 @@
+{"family": "PsaD", "n_seqs": 115, "length": 136, "gap_rates": [0.5391304347826087, 0.09565217391304348, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.0782608695652174, 0.0782608695652174, 0.0782608695652174, 0.0782608695652174, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06086956521739131, 0.06086956521739131, 0.06086956521739131, 0.06086956521739131, 0.06086956521739131, 0.06086956521739131, 0.06956521739130435, 0.06956521739130435, 0.06086956521739131, 0.06086956521739131, 0.06086956521739131, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9304347826086956, 0.0, 0.0, 0.0, 0.19130434782608696, 0.1565217391304348, 0.17391304347826086, 0.10434782608695652, 0.10434782608695652, 0.4434782608695652, 0.43478260869565216, 0.43478260869565216, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008695652173913044, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.08695652173913043, 0.13043478260869565, 0.1565217391304348], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PsbQ.gap.json b/pfam_gap_rates/PsbQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5fe9a42f4e0ccd6a76545721a2bc1d49bda23264
--- /dev/null
+++ b/pfam_gap_rates/PsbQ.gap.json
@@ -0,0 +1 @@
+{"family": "PsbQ", "n_seqs": 159, "length": 226, "gap_rates": [0.9308176100628931, 0.8301886792452831, 0.8113207547169812, 0.8113207547169812, 0.7735849056603774, 0.7735849056603774, 0.710691823899371, 0.6729559748427673, 0.660377358490566, 0.660377358490566, 0.6540880503144654, 0.6540880503144654, 0.6477987421383647, 0.6352201257861635, 0.6037735849056604, 0.5974842767295597, 0.5974842767295597, 0.7484276729559748, 0.710691823899371, 0.6792452830188679, 0.8930817610062893, 0.9308176100628931, 0.8113207547169812, 0.610062893081761, 0.6037735849056604, 0.5660377358490566, 0.5471698113207547, 0.5408805031446541, 0.5408805031446541, 0.5471698113207547, 0.5408805031446541, 0.5408805031446541, 0.5408805031446541, 0.9245283018867925, 0.9371069182389937, 0.9371069182389937, 0.9371069182389937, 0.89937106918239, 0.5345911949685535, 0.5345911949685535, 0.5345911949685535, 0.5345911949685535, 0.5345911949685535, 0.5283018867924528, 0.5283018867924528, 0.5283018867924528, 0.5283018867924528, 0.5408805031446541, 0.5534591194968553, 0.5660377358490566, 0.6477987421383647, 0.6163522012578616, 0.5849056603773585, 0.5471698113207547, 0.5345911949685535, 0.5031446540880503, 0.5157232704402516, 0.5283018867924528, 0.7044025157232704, 0.5786163522012578, 0.5408805031446541, 0.5471698113207547, 0.559748427672956, 0.5471698113207547, 0.5345911949685535, 0.5220125786163522, 0.5157232704402516, 0.5283018867924528, 0.5157232704402516, 0.5220125786163522, 0.5220125786163522, 0.5031446540880503, 0.4968553459119497, 0.9245283018867925, 0.9371069182389937, 0.9371069182389937, 0.9371069182389937, 0.9371069182389937, 0.9371069182389937, 0.9245283018867925, 0.5786163522012578, 0.5723270440251572, 0.49056603773584906, 0.46540880503144655, 0.49056603773584906, 0.46540880503144655, 0.44654088050314467, 0.4339622641509434, 0.8867924528301887, 0.8867924528301887, 0.89937106918239, 0.8867924528301887, 0.8490566037735849, 0.389937106918239, 0.389937106918239, 0.3836477987421384, 0.389937106918239, 0.389937106918239, 0.389937106918239, 0.6792452830188679, 0.6792452830188679, 0.7044025157232704, 0.949685534591195, 0.41509433962264153, 0.41509433962264153, 0.4088050314465409, 0.31446540880503143, 0.29559748427672955, 0.29559748427672955, 0.2641509433962264, 0.2578616352201258, 0.25157232704402516, 0.25157232704402516, 0.2138364779874214, 0.18238993710691823, 0.13836477987421383, 0.11949685534591195, 0.11949685534591195, 0.9371069182389937, 0.9371069182389937, 0.1069182389937107, 0.1069182389937107, 0.1069182389937107, 0.08176100628930817, 0.07547169811320754, 0.07547169811320754, 0.05660377358490566, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.949685534591195, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.9308176100628931, 0.0440251572327044, 0.0440251572327044, 0.9371069182389937, 0.9371069182389937, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.03773584905660377, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.03773584905660377, 0.03773584905660377, 0.031446540880503145, 0.031446540880503145, 0.031446540880503145, 0.031446540880503145, 0.031446540880503145, 0.031446540880503145, 0.050314465408805034, 0.8679245283018868, 0.05660377358490566, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.050314465408805034, 0.0440251572327044, 0.03773584905660377, 0.03773584905660377, 0.050314465408805034, 0.05660377358490566, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.0880503144654088, 0.10062893081761007, 0.10062893081761007, 0.10062893081761007, 0.10062893081761007, 0.10062893081761007, 0.10062893081761007, 0.1069182389937107, 0.1069182389937107, 0.1069182389937107, 0.1069182389937107, 0.11320754716981132, 0.11320754716981132, 0.11949685534591195, 0.11949685534591195, 0.11949685534591195, 0.1320754716981132, 0.1509433962264151, 0.16981132075471697, 0.18238993710691823, 0.22641509433962265, 0.3081761006289308, 0.48427672955974843], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pterin_bind.gap.json b/pfam_gap_rates/Pterin_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef636ea5c73853ae39169cfbc43bfe104800ddb5
--- /dev/null
+++ b/pfam_gap_rates/Pterin_bind.gap.json
@@ -0,0 +1 @@
+{"family": "Pterin_bind", "n_seqs": 3757, "length": 265, "gap_rates": [0.15278147458078253, 0.08331115251530477, 0.07559222784136278, 0.06787330316742081, 0.06601011445302103, 0.06521160500399255, 0.06388075592227842, 0.06361458610593558, 0.06308224647324993, 0.06121905775885015, 0.06015437849347884, 0.05802501996273623, 0.05616183124833644, 0.057226510513707744, 0.05403247271759382, 0.05030609528879425, 0.04657971785999468, 0.6089965397923875, 0.06707479371839234, 0.04391801969656641, 0.040191642267766836, 0.03939313281873835, 0.03779611392068139, 0.03593292520628161, 0.035666755389938784, 0.03353739685919617, 0.032738887410167686, 0.03167420814479638, 0.030609528879425075, 0.030343359063082248, 0.02927867979771094, 0.029012509981368114, 0.029811019430396594, 0.03007718924673942, 0.03220654777748203, 0.029012509981368114, 0.028746340165025287, 0.02848017034868246, 0.02848017034868246, 0.028214000532339634, 0.02848017034868246, 0.02848017034868246, 0.029012509981368114, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Pup.gap.json b/pfam_gap_rates/Pup.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7014d8c307cc1babbbf18ab1a984bc337885d31c
--- /dev/null
+++ b/pfam_gap_rates/Pup.gap.json
@@ -0,0 +1 @@
+{"family": "Pup", "n_seqs": 207, "length": 71, "gap_rates": [0.8067632850241546, 0.8067632850241546, 0.7874396135265701, 0.8840579710144928, 0.6763285024154589, 0.6086956521739131, 0.36231884057971014, 0.3285024154589372, 0.2560386473429952, 0.2463768115942029, 0.2222222222222222, 0.20772946859903382, 0.19806763285024154, 0.1932367149758454, 0.9227053140096618, 0.8454106280193237, 0.1932367149758454, 0.2318840579710145, 0.20772946859903382, 0.18357487922705315, 0.15458937198067632, 0.1497584541062802, 0.18840579710144928, 0.13526570048309178, 0.178743961352657, 0.16908212560386474, 0.3188405797101449, 0.2222222222222222, 0.07729468599033816, 0.043478260869565216, 0.057971014492753624, 0.05314009661835749, 0.03864734299516908, 0.024154589371980676, 0.01932367149758454, 0.05314009661835749, 0.07246376811594203, 0.10628019323671498, 0.19806763285024154, 0.14009661835748793, 0.07729468599033816, 0.05314009661835749, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004830917874396135, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pup_ligase.gap.json b/pfam_gap_rates/Pup_ligase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b666b7d6588d77fcf9b1a5da70919192d158df3
--- /dev/null
+++ b/pfam_gap_rates/Pup_ligase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pyr_excise.gap.json b/pfam_gap_rates/Pyr_excise.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43e5d2703f6aac11b230fcaee8a716ee9d070d85
--- /dev/null
+++ b/pfam_gap_rates/Pyr_excise.gap.json
@@ -0,0 +1 @@
+{"family": "Pyr_excise", "n_seqs": 109, "length": 140, "gap_rates": [0.13761467889908258, 0.09174311926605505, 0.06422018348623854, 0.03669724770642202, 0.10091743119266056, 0.11009174311926606, 0.09174311926605505, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.6697247706422018, 0.5871559633027523, 0.5871559633027523, 0.5871559633027523, 0.5871559633027523, 0.5596330275229358, 0.5596330275229358, 0.8807339449541285, 0.926605504587156, 0.944954128440367, 0.9357798165137615, 0.926605504587156, 0.8623853211009175, 0.5688073394495413, 0.07339449541284404, 0.07339449541284404, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.045871559633027525, 0.045871559633027525, 0.05504587155963303, 0.045871559633027525, 0.8348623853211009, 0.8165137614678899, 0.8165137614678899, 0.8165137614678899, 0.27522935779816515, 0.23853211009174313, 0.21100917431192662, 0.2018348623853211, 0.05504587155963303, 0.05504587155963303, 0.045871559633027525, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.027522935779816515, 0.06422018348623854, 0.08256880733944955, 0.11009174311926606, 0.12844036697247707, 0.14678899082568808, 0.6972477064220184, 0.6972477064220184, 0.7064220183486238, 0.7064220183486238, 0.7155963302752294, 0.7889908256880734, 0.908256880733945, 0.926605504587156, 0.8623853211009175, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.23853211009174313, 0.23853211009174313, 0.23853211009174313, 0.26605504587155965, 0.26605504587155965, 0.26605504587155965, 0.26605504587155965, 0.7706422018348624, 0.7614678899082569, 0.7798165137614679, 0.7614678899082569, 0.30275229357798167, 0.3119266055045872, 0.3119266055045872, 0.30275229357798167, 0.30275229357798167, 0.30275229357798167, 0.30275229357798167, 0.30275229357798167, 0.30275229357798167, 0.30275229357798167, 0.3211009174311927, 0.3577981651376147, 0.3669724770642202, 0.3669724770642202, 0.3669724770642202, 0.3669724770642202, 0.3669724770642202, 0.4036697247706422, 0.4036697247706422, 0.44036697247706424, 0.43119266055045874, 0.43119266055045874, 0.43119266055045874, 0.44036697247706424, 0.46788990825688076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pyr_redox.gap.json b/pfam_gap_rates/Pyr_redox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7232fc25bf1648995c0424afce5fde9fb85f042a
--- /dev/null
+++ b/pfam_gap_rates/Pyr_redox.gap.json
@@ -0,0 +1 @@
+{"family": "Pyr_redox", "n_seqs": 414, "length": 83, "gap_rates": [0.2995169082125604, 0.028985507246376812, 0.01932367149758454, 0.01932367149758454, 0.016908212560386472, 0.014492753623188406, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.00966183574879227, 0.007246376811594203, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0, 0.0, 0.012077294685990338, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.8647342995169082, 0.2222222222222222, 0.18357487922705315, 0.178743961352657, 0.178743961352657, 0.1497584541062802, 0.1473429951690821, 0.028985507246376812, 0.021739130434782608, 0.026570048309178744, 0.033816425120772944, 0.033816425120772944, 0.036231884057971016, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.036231884057971016, 0.036231884057971016, 0.04106280193236715, 0.9178743961352657, 0.05555555555555555, 0.04106280193236715, 0.04106280193236715, 0.043478260869565216, 0.04830917874396135, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.05314009661835749, 0.057971014492753624, 0.06280193236714976, 0.06763285024154589, 0.07004830917874397, 0.07729468599033816, 0.08454106280193237, 0.0966183574879227, 0.13043478260869565, 0.1932367149758454, 0.35507246376811596, 0.7608695652173914, 0.35507246376811596, 0.4057971014492754, 0.6183574879227053, 0.4106280193236715, 0.45169082125603865, 0.5434782608695652, 0.7222222222222222, 0.9106280193236715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pyridoxal_deC.gap.json b/pfam_gap_rates/Pyridoxal_deC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c96c2c3f28f091d69c598e4bb37aa25355de787
--- /dev/null
+++ b/pfam_gap_rates/Pyridoxal_deC.gap.json
@@ -0,0 +1 @@
+{"family": "Pyridoxal_deC", "n_seqs": 3528, "length": 403, "gap_rates": [0.7392290249433107, 0.7346938775510204, 0.7278911564625851, 0.7236394557823129, 0.7071995464852607, 0.6978458049886621, 0.7290249433106576, 0.657312925170068, 0.6320861678004536, 0.61281179138322, 0.5952380952380952, 0.5802154195011338, 0.5688775510204082, 0.5606575963718821, 0.5532879818594104, 0.546201814058957, 0.5337301587301587, 0.6062925170068028, 0.5096371882086168, 0.5002834467120182, 0.4951814058956916, 0.4914965986394558, 0.485827664399093, 0.4776077097505669, 0.47278911564625853, 0.4651360544217687, 0.45861678004535145, 0.4492630385487528, 0.44359410430839, 0.44019274376417233, 0.4362244897959184, 0.43197278911564624, 0.4280045351473923, 0.4237528344671202, 0.42091836734693877, 0.41383219954648526, 0.39994331065759636, 0.39200680272108845, 0.4883786848072562, 0.3866213151927438, 0.38492063492063494, 0.3818027210884354, 0.37896825396825395, 0.37556689342403626, 0.3707482993197279, 0.36507936507936506, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RGS.gap.json b/pfam_gap_rates/RGS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..869d99488f0bcc0cd0e91986fb37bf86fec63773
--- /dev/null
+++ b/pfam_gap_rates/RGS.gap.json
@@ -0,0 +1 @@
+{"family": "RGS", "n_seqs": 2707, "length": 181, "gap_rates": [0.69449575175471, 0.356483191725157, 0.28260066494274105, 0.23864056150720356, 0.19726634650905062, 0.18766161802733652, 0.18359807905430367, 0.17251570003694125, 0.15958625785001848, 0.14333210195788695, 0.9423716291097155, 0.12301440709272257, 0.11784263021795345, 0.11304026597709642, 0.10639083856667898, 0.10306612486147027, 0.10084964905799779, 0.09974141115626155, 0.09900258588843738, 0.09826376062061322, 0.09604728481714074, 0.09346139637975619, 0.09752493535278907, 0.09050609530845954, 0.08902844477281123, 0.08681196896933875, 0.9309198374584411, 0.8684891023272996, 0.08496490579977835, 0.08385666789804211, 0.08274842999630587, 0.0823790173623938, 0.08053195419283339, 0.08016254155892132, 0.07794606575544884, 0.07720724048762467, 0.07572958995197636, 0.0749907646841522, 0.07462135205024012, 0.07425193941632804, 0.07425193941632804, 0.07425193941632804, 0.06981898780938309, 0.5847801994828223, 0.6653121536756557, 0.7151828592537864, 0.7417805688954562, 0.7772441817510158, 0.7890653860362025, 0.8119689693387514, 0.828961950498707, 0.8718138160325083, 0.8895456224602881, 0.9039527151828592, 0.9113409678611009, 0.9183598079054304, 0.9246398226819357, 0.9368304396010344, 0.9420022164758035, 0.9479128186183967, 0.9497598817879571, 0.9442186922792759, 0.9394163280384189, 0.9316586627262652, 0.921315108976727, 0.9146656815663096, 0.90764684152198, 0.8987809383080901, 0.8806797192463982, 0.847063169560399, 0.819357222016993, 0.7971924639822682, 0.7835241965275213, 0.7646841521980051, 0.7229405245659402, 0.6970816401920946, 0.6361285555966014, 0.5485777613594385, 0.26856298485408203, 0.08828961950498707, 0.048762467676394534, 0.0384189139268563, 0.031030661248614703, 0.024750646472109346, 0.021795345400812707, 0.02031769486516439, 0.02105652013298855, 0.01773180642777983, 0.015515330624307351, 0.015145917990395271, 0.015145917990395271, 0.014407092722571112, 0.014776505356483192, 0.01625415589213151, 0.015145917990395271, 0.014407092722571112, 0.09013668267454747, 0.07646841521980052, 0.060953084595493166, 0.025489471739933506, 0.025858884373845585, 0.01920945696342815, 0.01810121906169191, 0.01847063169560399, 0.8913926856298485, 0.021795345400812707, 0.022903583302548946, 0.024381233838197267, 0.026228297007757664, 0.029183598079054303, 0.029553010712966385, 0.030661248614702624, 0.046176579239009974, 0.04322127816771334, 0.0347247875877355, 0.0347247875877355, 0.03213889915035094, 0.033247137052087185, 0.03952715182859254, 0.04100480236424086, 0.05245659401551533, 0.39970446989287034, 0.6486885851496121, 0.7233099371998523, 0.7635759142962689, 0.8097524935352789, 0.8629479128186184, 0.902475064647211, 0.91651274473587, 0.9250092353158478, 0.9346139637975619, 0.9416328038418914, 0.9434798670114518, 0.9468045807166605, 0.9456963428149243, 0.9431104543775397, 0.9405245659401551, 0.9283339490210565, 0.9216845216106391, 0.9098633173254526, 0.8729220539342446, 0.8466937569264869, 0.7798300701884004, 0.7421499815293683, 0.6974510528260066, 0.555596601403768, 0.3110454377539712, 0.05097894347986701, 0.04839305504248245, 0.04728481714074621, 0.05060953084595493, 0.047654229774658295, 0.04728481714074621, 0.048762467676394534, 0.049870705578130774, 0.05024011821204285, 0.05208718138160325, 0.05356483191725157, 0.05541189508681197, 0.05652013298854821, 0.058367196158108606, 0.06132249722940525, 0.06353897303287773, 0.06501662356852604, 0.0897672700406354, 0.11747321758404138, 0.10269671222755818, 0.1134096786110085, 0.09974141115626155, 0.10158847432582194, 0.10454377539711858, 0.1078684891023273, 0.11784263021795345, 0.1407462135205024, 0.19431104543775396, 0.2393793867750277, 0.2814924270410048, 0.3058736608792021, 0.3476172885112671, 0.4240857037310676, 0.7122275581824898], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RHD_dimer.gap.json b/pfam_gap_rates/RHD_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fec07763663297faa81b2f1b4fb2556579db2f8
--- /dev/null
+++ b/pfam_gap_rates/RHD_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "RHD_dimer", "n_seqs": 296, "length": 107, "gap_rates": [0.3952702702702703, 0.0777027027027027, 0.07432432432432433, 0.07094594594594594, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05067567567567568, 0.04391891891891892, 0.04391891891891892, 0.04391891891891892, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.4358108108108108, 0.04054054054054054, 0.037162162162162164, 0.033783783783783786, 0.037162162162162164, 0.037162162162162164, 0.037162162162162164, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.3141891891891892, 0.6114864864864865, 0.3108108108108108, 0.25, 0.9358108108108109, 0.9459459459459459, 0.9391891891891891, 0.9358108108108109, 0.22297297297297297, 0.21621621621621623, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.037162162162162164, 0.033783783783783786, 0.037162162162162164, 0.033783783783783786, 0.030405405405405407, 0.033783783783783786, 0.037162162162162164, 0.033783783783783786, 0.02702702702702703, 0.02702702702702703, 0.02364864864864865, 0.013513513513513514, 0.4155405405405405, 0.02364864864864865, 0.030405405405405407, 0.030405405405405407, 0.030405405405405407, 0.030405405405405407, 0.02364864864864865, 0.02364864864864865, 0.02364864864864865, 0.02364864864864865, 0.02364864864864865, 0.037162162162162164, 0.057432432432432436, 0.030405405405405407, 0.030405405405405407, 0.030405405405405407, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.030405405405405407, 0.030405405405405407, 0.033783783783783786, 0.033783783783783786, 0.037162162162162164, 0.037162162162162164, 0.08445945945945946, 0.057432432432432436, 0.0472972972972973, 0.06418918918918919, 0.36824324324324326, 0.04391891891891892, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04391891891891892, 0.04391891891891892, 0.04391891891891892, 0.05067567567567568, 0.07094594594594594, 0.3277027027027027], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RHS_repeat.gap.json b/pfam_gap_rates/RHS_repeat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbfdf3416bd18115fb969dc0a4ce4ff6cd8e008e
--- /dev/null
+++ b/pfam_gap_rates/RHS_repeat.gap.json
@@ -0,0 +1 @@
+{"family": "RHS_repeat", "n_seqs": 5000, "length": 38, "gap_rates": [0.2352, 0.145, 0.121, 0.093, 0.062, 0.0426, 0.032, 0.02, 0.0124, 0.0082, 0.0422, 0.0044, 0.0034, 0.004, 0.0008, 0.0176, 0.0008, 0.0696, 0.0044, 0.0022, 0.0, 0.0, 0.007, 0.0032, 0.0028, 0.0034, 0.0044, 0.0092, 0.021, 0.0506, 0.0822, 0.1114, 0.1476, 0.1914, 0.2716, 0.3586, 0.509, 0.8088], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RILP.gap.json b/pfam_gap_rates/RILP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9bf1df09be37c72a4b06bbe60e75825709489a61
--- /dev/null
+++ b/pfam_gap_rates/RILP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RIP.gap.json b/pfam_gap_rates/RIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..812d68f6d9cd52b215faf1893ca3554b91ad4977
--- /dev/null
+++ b/pfam_gap_rates/RIP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RLI.gap.json b/pfam_gap_rates/RLI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4eac04730e5b1de78e3ccdd65cd2d104596a9634
--- /dev/null
+++ b/pfam_gap_rates/RLI.gap.json
@@ -0,0 +1 @@
+{"family": "RLI", "n_seqs": 720, "length": 35, "gap_rates": [0.5027777777777778, 0.1763888888888889, 0.10694444444444444, 0.08055555555555556, 0.02638888888888889, 0.022222222222222223, 0.019444444444444445, 0.019444444444444445, 0.009722222222222222, 0.009722222222222222, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.001388888888888889, 0.001388888888888889, 0.001388888888888889, 0.001388888888888889, 0.001388888888888889, 0.5055555555555555, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009722222222222222, 0.015277777777777777, 0.018055555555555554, 0.5472222222222223, 0.5597222222222222, 0.05694444444444444, 0.07083333333333333, 0.09305555555555556, 0.16666666666666666, 0.23333333333333334, 0.4708333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_bind_2.gap.json b/pfam_gap_rates/RNA_bind_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7d3227a828b858c3b68232efc8b6ffc4542fb6d
--- /dev/null
+++ b/pfam_gap_rates/RNA_bind_2.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_bind_2", "n_seqs": 143, "length": 63, "gap_rates": [0.06293706293706294, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04195804195804196, 0.1258741258741259, 0.18181818181818182, 0.13986013986013987, 0.1048951048951049, 0.09090909090909091, 0.14685314685314685, 0.06993006993006994, 0.6783216783216783, 0.04895104895104895, 0.04895104895104895, 0.03496503496503497, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.006993006993006993, 0.006993006993006993, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9020979020979021, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.8741258741258742, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.06293706293706294, 0.06993006993006994, 0.0979020979020979, 0.11888111888111888, 0.44755244755244755], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb5_N.gap.json b/pfam_gap_rates/RNA_pol_Rpb5_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbe5006e0bcd9c265a6a62498576830385cf4c5b
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb5_N.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb5_N", "n_seqs": 415, "length": 111, "gap_rates": [0.7662650602409639, 0.37349397590361444, 0.20481927710843373, 0.15180722891566265, 0.12289156626506025, 0.1180722891566265, 0.10361445783132531, 0.10361445783132531, 0.10361445783132531, 0.09879518072289156, 0.09879518072289156, 0.09879518072289156, 0.09879518072289156, 0.0963855421686747, 0.0819277108433735, 0.0819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04578313253012048, 0.04578313253012048, 0.05060240963855422, 0.04578313253012048, 0.04819277108433735, 0.05060240963855422, 0.05542168674698795, 0.05301204819277108, 0.043373493975903614, 0.04819277108433735, 0.04819277108433735, 0.04578313253012048, 0.043373493975903614, 0.03855421686746988, 0.03614457831325301, 0.033734939759036145, 0.03614457831325301, 0.03614457831325301, 0.03855421686746988, 0.03614457831325301, 0.033734939759036145, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.03855421686746988, 0.05060240963855422, 0.0963855421686747, 0.07710843373493977, 0.4602409638554217, 0.43373493975903615, 0.38072289156626504, 0.8072289156626506, 0.7975903614457831, 0.04578313253012048, 0.043373493975903614, 0.03855421686746988, 0.03132530120481928, 0.033734939759036145, 0.03614457831325301, 0.03132530120481928, 0.03132530120481928, 0.033734939759036145, 0.8216867469879519, 0.8240963855421687, 0.8240963855421687, 0.8361445783132531, 0.8385542168674699, 0.8409638554216867, 0.8506024096385543, 0.8530120481927711, 0.8457831325301205, 0.8385542168674699, 0.8361445783132531, 0.8337349397590361, 0.8240963855421687, 0.8216867469879519, 0.8168674698795181, 0.03132530120481928, 0.0746987951807229, 0.05783132530120482, 0.05542168674698795, 0.03614457831325301, 0.8313253012048193, 0.9373493975903614, 0.8337349397590361, 0.8168674698795181, 0.033734939759036145, 0.033734939759036145, 0.033734939759036145, 0.02891566265060241, 0.033734939759036145, 0.03614457831325301, 0.03614457831325301, 0.04096385542168675, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.04819277108433735, 0.05060240963855422, 0.908433734939759, 0.043373493975903614, 0.043373493975903614, 0.043373493975903614, 0.043373493975903614, 0.04578313253012048, 0.04819277108433735, 0.05301204819277108, 0.05301204819277108, 0.05783132530120482, 0.08433734939759036, 0.1493975903614458, 0.3180722891566265, 0.5084337349397591], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNF220.gap.json b/pfam_gap_rates/RNF220.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f48a2cac77770c6b87909800de95f6b05dea1d9c
--- /dev/null
+++ b/pfam_gap_rates/RNF220.gap.json
@@ -0,0 +1 @@
+{"family": "RNF220", "n_seqs": 103, "length": 317, "gap_rates": [0.7961165048543689, 0.6893203883495146, 0.5533980582524272, 0.47572815533980584, 0.4174757281553398, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.3883495145631068, 0.3883495145631068, 0.3883495145631068, 0.3883495145631068, 0.3883495145631068, 0.3883495145631068, 0.3883495145631068, 0.3883495145631068, 0.39805825242718446, 0.39805825242718446, 0.39805825242718446, 0.46601941747572817, 0.46601941747572817, 0.4854368932038835, 0.46601941747572817, 0.46601941747572817, 0.5242718446601942, 0.5339805825242718, 0.8737864077669902, 0.8737864077669902, 0.8932038834951457, 0.912621359223301, 0.9320388349514563, 0.9320388349514563, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_E_G.gap.json b/pfam_gap_rates/RNase_E_G.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8903fe029a0a6f9ce0f7714ca4bbdffaa977d226
--- /dev/null
+++ b/pfam_gap_rates/RNase_E_G.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_P_p30.gap.json b/pfam_gap_rates/RNase_P_p30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a68fc712331afafee985bd9766b883b036c1346
--- /dev/null
+++ b/pfam_gap_rates/RNase_P_p30.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_T.gap.json b/pfam_gap_rates/RNase_T.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35f565a00a18aa52cb9f095c76548832aef7c0a6
--- /dev/null
+++ b/pfam_gap_rates/RNase_T.gap.json
@@ -0,0 +1 @@
+{"family": "RNase_T", "n_seqs": 5000, "length": 201, "gap_rates": [0.3692, 0.1138, 0.084, 0.0806, 0.0788, 0.0768, 0.0618, 0.0614, 0.062, 0.0618, 0.0604, 0.073, 0.8658, 0.9104, 0.9464, 0.9272, 0.891, 0.8504, 0.6848, 0.2134, 0.1186, 0.078, 0.0652, 0.0604, 0.0434, 0.0372, 0.0374, 0.0312, 0.032, 0.0318, 0.0314, 0.031, 0.0284, 0.0276, 0.0286, 0.0328, 0.4202, 0.7954, 0.9248, 0.7836, 0.5868, 0.111, 0.069, 0.059, 0.041, 0.0246, 0.023, 0.022, 0.0214, 0.0212, 0.0204, 0.0202, 0.0206, 0.0204, 0.027, 0.6812, 0.6208, 0.0448, 0.0312, 0.0198, 0.0218, 0.0218, 0.0182, 0.0168, 0.016, 0.016, 0.0156, 0.0158, 0.0176, 0.016, 0.0166, 0.0198, 0.9092, 0.0172, 0.0156, 0.0162, 0.0162, 0.0248, 0.0236, 0.0254, 0.0236, 0.0514, 0.8944, 0.031, 0.0276, 0.0208, 0.0446, 0.0276, 0.0216, 0.0176, 0.017, 0.0178, 0.0184, 0.55, 0.0536, 0.9044, 0.9252, 0.942, 0.9496, 0.9356, 0.9122, 0.8986, 0.0814, 0.063, 0.056, 0.0528, 0.06, 0.0884, 0.0734, 0.82, 0.1372, 0.056, 0.0538, 0.0518, 0.0496, 0.0478, 0.043, 0.0332, 0.0282, 0.0284, 0.0284, 0.0288, 0.03, 0.04, 0.0434, 0.2612, 0.0992, 0.078, 0.2582, 0.2588, 0.2514, 0.8174, 0.8726, 0.8508, 0.7712, 0.374, 0.1604, 0.0734, 0.0664, 0.0544, 0.0474, 0.0464, 0.0472, 0.047, 0.0466, 0.0484, 0.0944, 0.0644, 0.0584, 0.0584, 0.085, 0.084, 0.0678, 0.0646, 0.067, 0.089, 0.7226, 0.8394, 0.8932, 0.9244, 0.9426, 0.949, 0.936, 0.913, 0.8736, 0.7992, 0.6594, 0.1726, 0.0696, 0.0582, 0.0552, 0.0556, 0.0558, 0.0564, 0.0568, 0.096, 0.0966, 0.0688, 0.0612, 0.0604, 0.0628, 0.0886, 0.0906, 0.2874, 0.9432, 0.7314, 0.4424, 0.0658, 0.0664, 0.0672, 0.0678, 0.0688, 0.0696, 0.0706, 0.0722, 0.0794, 0.0896, 0.1222, 0.1508, 0.2042, 0.5298], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RSN1_TM.gap.json b/pfam_gap_rates/RSN1_TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e467ec6dcfb02c265160e0c81ad9e677fb53bf7d
--- /dev/null
+++ b/pfam_gap_rates/RSN1_TM.gap.json
@@ -0,0 +1 @@
+{"family": "RSN1_TM", "n_seqs": 1181, "length": 213, "gap_rates": [0.8814563928873835, 0.32091447925486877, 0.26248941574936496, 0.21845893310753597, 0.1913632514817951, 0.17696867061812024, 0.17442845046570704, 0.1727349703640982, 0.1710414902624894, 0.1685012701100762, 0.1685012701100762, 0.1685012701100762, 0.1685012701100762, 0.1651143099068586, 0.1642675698560542, 0.1634208298052498, 0.16172734970364097, 0.16172734970364097, 0.16172734970364097, 0.16172734970364097, 0.16172734970364097, 0.16172734970364097, 0.16088060965283657, 0.16088060965283657, 0.16088060965283657, 0.16172734970364097, 0.7188823031329382, 0.7129551227773073, 0.15580016934801016, 0.1710414902624894, 0.15918712955122777, 0.15410668924640136, 0.15580016934801016, 0.15580016934801016, 0.15410668924640136, 0.15410668924640136, 0.15241320914479256, 0.15325994919559696, 0.15325994919559696, 0.21761219305673157, 0.3310753598645216, 0.6240474174428451, 0.825571549534293, 0.8712955122777307, 0.8899237933954276, 0.9161727349703641, 0.9297205757832345, 0.9381879762912786, 0.9246401354784082, 0.8966977138018628, 0.8797629127857748, 0.8501270110076207, 0.7620660457239627, 0.5817104149026249, 0.23200677392040644, 0.21676545300592717, 0.19729043183742592, 0.17696867061812024, 0.165961049957663, 0.17950889077053345, 0.20829805249788316, 0.165961049957663, 0.16003386960203217, 0.49195596951735815, 0.14648602878916173, 0.14055884843353092, 0.07620660457239628, 0.8467400508044031, 0.8662150719729044, 0.8687552921253175, 0.8738357324301439, 0.8924640135478408, 0.9204064352243861, 0.9229466553767993, 0.9314140558848434, 0.9220999153259949, 0.8992379339542761, 0.890770533446232, 0.8738357324301439, 0.8687552921253175, 0.8475867908552075, 0.8458933107535986, 0.07281964436917866, 0.07112616426756986, 0.06943268416596104, 0.06689246401354784, 0.06604572396274344, 0.06181202370872142, 0.05927180355630821, 0.05927180355630821, 0.057578323454699404, 0.05249788314987299, 0.04487722269263336, 0.04318374259102455, 0.04149026248941575, 0.04233700254022015, 0.04233700254022015, 0.04487722269263336, 0.04149026248941575, 0.04318374259102455, 0.03640982218458933, 0.03556308213378493, 0.03386960203217612, 0.03556308213378493, 0.03302286198137172, 0.03302286198137172, 0.03132938187976291, 0.03048264182895851, 0.03048264182895851, 0.027095681625740897, 0.0279424216765453, 0.0279424216765453, 0.028789161727349702, 0.024555461473327687, 0.02286198137171888, 0.028789161727349702, 0.02286198137171888, 0.023708721422523286, 0.024555461473327687, 0.023708721422523286, 0.024555461473327687, 0.023708721422523286, 0.024555461473327687, 0.01947502116850127, 0.018628281117696866, 0.021168501270110076, 0.02032176121930567, 0.04318374259102455, 0.02032176121930567, 0.01947502116850127, 0.017781541066892465, 0.017781541066892465, 0.018628281117696866, 0.017781541066892465, 0.017781541066892465, 0.03048264182895851, 0.03048264182895851, 0.03810330228619814, 0.03895004233700254, 0.03979678238780694, 0.03979678238780694, 0.21422523285351397, 0.2540220152413209, 0.3353090601185436, 0.3852667231160034, 0.46316680779000846, 0.43522438611346315, 0.6790855207451313, 0.7917019475021169, 0.8484335309060118, 0.869602032176122, 0.9000846740050804, 0.9220999153259949, 0.9356477561388654, 0.9407281964436918, 0.9339542760372566, 0.9110922946655376, 0.8924640135478408, 0.8552074513124471, 0.8238780694326842, 0.7366638441998307, 0.6384419983065199, 0.1363251481795089, 0.0550381033022862, 0.04741744284504657, 0.04403048264182896, 0.04149026248941575, 0.04318374259102455, 0.04403048264182896, 0.04403048264182896, 0.04572396274343776, 0.04657070279424217, 0.04826418289585097, 0.23962743437764605, 0.9127857747671465, 0.7840812870448772, 0.07874682472480948, 0.07366638441998306, 0.14140558848433532, 0.03725656223539373, 0.9051651143099069, 0.9127857747671465, 0.930567315834039, 0.9407281964436918, 0.9458086367485182, 0.9441151566469094, 0.9331075359864521, 0.9237933954276037, 0.9068585944115156, 0.8950042337002541, 0.03386960203217612, 0.03895004233700254, 0.03895004233700254, 0.03895004233700254, 0.03895004233700254, 0.03895004233700254, 0.03895004233700254, 0.03895004233700254, 0.03895004233700254, 0.04233700254022015, 0.04233700254022015, 0.04403048264182896, 0.04487722269263336, 0.04572396274343776, 0.04741744284504657, 0.04826418289585097, 0.05249788314987299, 0.06435224386113463, 0.07112616426756986, 0.09568162574089754, 0.15580016934801016, 0.28789161727349705, 0.5325994919559696], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Radical_SAM_C.gap.json b/pfam_gap_rates/Radical_SAM_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3991440bde7f3fdcff39643e8c614df75196cbd
--- /dev/null
+++ b/pfam_gap_rates/Radical_SAM_C.gap.json
@@ -0,0 +1 @@
+{"family": "Radical_SAM_C", "n_seqs": 1461, "length": 91, "gap_rates": [0.4072553045859001, 0.06228610540725531, 0.01026694045174538, 0.0054757015742642025, 0.0054757015742642025, 0.0054757015742642025, 0.0054757015742642025, 0.0054757015742642025, 0.0054757015742642025, 0.0054757015742642025, 0.004791238877481177, 0.0054757015742642025, 0.004791238877481177, 0.004791238877481177, 0.004791238877481177, 0.004791238877481177, 0.004791238877481177, 0.004791238877481177, 0.0054757015742642025, 0.006160164271047228, 0.00889801505817933, 0.009582477754962354, 0.009582477754962354, 0.010951403148528405, 0.006160164271047228, 0.004106776180698152, 0.0054757015742642025, 0.004791238877481177, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004791238877481177, 0.0027378507871321013, 0.0034223134839151265, 0.0034223134839151265, 0.0034223134839151265, 0.0034223134839151265, 0.0034223134839151265, 0.0027378507871321013, 0.0027378507871321013, 0.0034223134839151265, 0.8473648186173853, 0.0027378507871321013, 0.0027378507871321013, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.1273100616016427, 0.006160164271047228, 0.006160164271047228, 0.0054757015742642025, 0.004791238877481177, 0.006844626967830253, 0.006844626967830253, 0.86652977412731, 0.8733744010951403, 0.919233401779603, 0.9096509240246407, 0.8678986995208761, 0.8631074606433949, 0.006844626967830253, 0.00889801505817933, 0.006160164271047228, 0.007529089664613279, 0.008213552361396304, 0.01026694045174538, 0.5331964407939768, 0.012320328542094456, 0.01574264202600958, 0.019849418206707735, 0.02943189596167009, 0.03216974674880219, 0.04106776180698152, 0.5852156057494866, 0.5783709787816564, 0.06707734428473648, 0.1026694045174538, 0.12867898699520877, 0.1676933607118412, 0.22313483915126625, 0.47707049965776865], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rcd1.gap.json b/pfam_gap_rates/Rcd1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c341e016dbcd83eaaa9ef5246a448fc4781e7321
--- /dev/null
+++ b/pfam_gap_rates/Rcd1.gap.json
@@ -0,0 +1 @@
+{"family": "Rcd1", "n_seqs": 493, "length": 261, "gap_rates": [0.3265720081135903, 0.2616632860040568, 0.2515212981744422, 0.24543610547667344, 0.23732251521298176, 0.23732251521298176, 0.21906693711967545, 0.21095334685598377, 0.20689655172413793, 0.2028397565922921, 0.20081135902636918, 0.19878296146044624, 0.19878296146044624, 0.19675456389452334, 0.19675456389452334, 0.1947261663286004, 0.1947261663286004, 0.18661257606490872, 0.1845841784989858, 0.18052738336713997, 0.1845841784989858, 0.18661257606490872, 0.1744421906693712, 0.17647058823529413, 0.1663286004056795, 0.1643002028397566, 0.1643002028397566, 0.16227180527383367, 0.1643002028397566, 0.1643002028397566, 0.16024340770791076, 0.15821501014198783, 0.15821501014198783, 0.15618661257606492, 0.15415821501014199, 0.15415821501014199, 0.15212981744421908, 0.15821501014198783, 0.15618661257606492, 0.15821501014198783, 0.15618661257606492, 0.15618661257606492, 0.15821501014198783, 0.15618661257606492, 0.15821501014198783, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RelA_SpoT.gap.json b/pfam_gap_rates/RelA_SpoT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..767ec0e779ed5563b0ed99a066ad984a3dda4912
--- /dev/null
+++ b/pfam_gap_rates/RelA_SpoT.gap.json
@@ -0,0 +1 @@
+{"family": "RelA_SpoT", "n_seqs": 3852, "length": 134, "gap_rates": [0.14953271028037382, 0.05451713395638629, 0.04932502596053998, 0.03997923156801662, 0.03946002076843198, 0.03894080996884735, 0.03790238836967809, 0.03686396677050883, 0.036344755970924195, 0.03556593977154725, 0.035306334371754934, 0.03556593977154725, 0.03556593977154725, 0.03608515057113188, 0.03582554517133956, 0.03556593977154725, 0.0347871235721703, 0.807632398753894, 0.9444444444444444, 0.9322429906542056, 0.7990654205607477, 0.6723779854620976, 0.09683281412253375, 0.7100207684319834, 0.6993769470404985, 0.6869158878504673, 0.04335410176531672, 0.03115264797507788, 0.030373831775700934, 0.029595015576323987, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.027777777777777776, 0.027258566978193146, 0.02596053997923157, 0.023624091381100727, 0.022066458982346833, 0.01739356178608515, 0.015835929387331256, 0.015835929387331256, 0.015835929387331256, 0.014537902388369679, 0.8948598130841121, 0.8995327102803738, 0.9343198338525441, 0.9008307372793354, 0.8982346832814122, 0.8912253374870197, 0.015057113187954309, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.013759086188992731, 0.014018691588785047, 0.014278296988577362, 0.014018691588785047, 0.013759086188992731, 0.014018691588785047, 0.014018691588785047, 0.012980269989615784, 0.014537902388369679, 0.015316718587746626, 0.01557632398753894, 0.015835929387331256, 0.015057113187954309, 0.014797507788161994, 0.01739356178608515, 0.014018691588785047, 0.009865005192107996, 0.016095534787123573, 0.015835929387331256, 0.014278296988577362, 0.007268951194184839, 0.010384215991692628, 0.010124610591900311, 0.008047767393561786, 0.006490134994807892, 0.008826583592938734, 0.005711318795430945, 0.006230529595015576, 0.006749740394600207, 0.006490134994807892, 0.007528556593977154, 0.007528556593977154, 0.008047767393561786, 0.008047767393561786, 0.00778816199376947, 0.008047767393561786, 0.007528556593977154, 0.7463655244029076, 0.7538940809968847, 0.9426272066458983, 0.9397715472481828, 0.7489615784008308, 0.7300103842159917, 0.7001557632398754, 0.692367601246106, 0.6734164070612668, 0.0446521287642783, 0.00960539979231568, 0.010643821391484943, 0.009086188992731049, 0.010643821391484943, 0.008826583592938734, 0.008307372793354102, 0.009086188992731049, 0.008826583592938734, 0.008047767393561786, 0.008826583592938734, 0.009865005192107996, 0.010124610591900311, 0.010384215991692628, 0.011941848390446522, 0.01142263759086189, 0.011682242990654205, 0.012461059190031152, 0.01272066458982347, 0.015316718587746626, 0.01557632398753894, 0.01687435098650052, 0.32087227414330216, 0.31360332294911736, 0.028556593977154723, 0.03556593977154725, 0.03920041536863967, 0.04127725856697819, 0.0446521287642783, 0.05529595015576324, 0.05867082035306334, 0.05970924195223261, 0.07217030114226376, 0.1773104880581516, 0.6526479750778816], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Remorin_C.gap.json b/pfam_gap_rates/Remorin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33e4e8c8663188f9df94109e97bc6bf52a721f53
--- /dev/null
+++ b/pfam_gap_rates/Remorin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Remorin_C", "n_seqs": 485, "length": 106, "gap_rates": [0.6350515463917525, 0.3670103092783505, 0.20618556701030927, 0.16082474226804125, 0.13402061855670103, 0.11958762886597939, 0.1154639175257732, 0.09896907216494845, 0.09896907216494845, 0.09072164948453608, 0.0865979381443299, 0.0865979381443299, 0.08453608247422681, 0.10515463917525773, 0.07422680412371134, 0.07010309278350516, 0.06597938144329897, 0.06391752577319587, 0.061855670103092786, 0.05360824742268041, 0.04742268041237113, 0.049484536082474224, 0.04742268041237113, 0.04536082474226804, 0.04536082474226804, 0.041237113402061855, 0.03917525773195876, 0.03917525773195876, 0.03917525773195876, 0.024742268041237112, 0.024742268041237112, 0.024742268041237112, 0.024742268041237112, 0.024742268041237112, 0.024742268041237112, 0.026804123711340205, 0.03711340206185567, 0.03505154639175258, 0.026804123711340205, 0.026804123711340205, 0.026804123711340205, 0.024742268041237112, 0.024742268041237112, 0.02268041237113402, 0.02268041237113402, 0.01443298969072165, 0.012371134020618556, 0.016494845360824743, 0.032989690721649485, 0.03505154639175258, 0.03505154639175258, 0.03917525773195876, 0.041237113402061855, 0.04329896907216495, 0.04329896907216495, 0.04329896907216495, 0.04329896907216495, 0.041237113402061855, 0.041237113402061855, 0.041237113402061855, 0.041237113402061855, 0.04329896907216495, 0.04329896907216495, 0.04329896907216495, 0.04536082474226804, 0.04536082474226804, 0.04742268041237113, 0.04742268041237113, 0.04742268041237113, 0.04742268041237113, 0.05154639175257732, 0.05360824742268041, 0.05360824742268041, 0.05360824742268041, 0.05360824742268041, 0.05360824742268041, 0.05567010309278351, 0.061855670103092786, 0.06597938144329897, 0.06804123711340206, 0.06804123711340206, 0.07010309278350516, 0.07216494845360824, 0.07216494845360824, 0.07422680412371134, 0.07628865979381444, 0.07628865979381444, 0.08041237113402062, 0.08453608247422681, 0.09690721649484536, 0.10309278350515463, 0.10103092783505155, 0.10721649484536082, 0.10927835051546392, 0.1154639175257732, 0.12164948453608247, 0.13402061855670103, 0.1360824742268041, 0.1463917525773196, 0.14432989690721648, 0.16494845360824742, 0.18350515463917524, 0.20618556701030927, 0.24329896907216494, 0.36082474226804123, 0.7030927835051546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Reticulon.gap.json b/pfam_gap_rates/Reticulon.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..960f99854d7b4b36f0c9591373d7870f929ae43b
--- /dev/null
+++ b/pfam_gap_rates/Reticulon.gap.json
@@ -0,0 +1 @@
+{"family": "Reticulon", "n_seqs": 851, "length": 178, "gap_rates": [0.6897767332549941, 0.19858989424206816, 0.15041128084606345, 0.136310223266745, 0.12925969447708577, 0.11985898942420682, 0.11868390129259694, 0.11868390129259694, 0.11515863689776733, 0.11633372502937721, 0.10575793184488837, 0.09870740305522914, 0.09283196239717979, 0.08225616921269095, 0.07873090481786134, 0.07285546415981199, 0.0681551116333725, 0.0681551116333725, 0.06580493537015276, 0.06462984723854288, 0.06345475910693302, 0.06345475910693302, 0.06227967097532315, 0.06227967097532315, 0.06227967097532315, 0.06110458284371328, 0.06110458284371328, 0.0564042303172738, 0.0564042303172738, 0.05405405405405406, 0.9048178613396005, 0.9095182138660399, 0.8989424206815512, 0.35487661574618096, 0.3490011750881316, 0.04935370152761457, 0.045828437132784956, 0.045828437132784956, 0.045828437132784956, 0.045828437132784956, 0.045828437132784956, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.04230317273795535, 0.04230317273795535, 0.041128084606345476, 0.0399529964747356, 0.03407755581668625, 0.03407755581668625, 0.03407755581668625, 0.03407755581668625, 0.03407755581668625, 0.03407755581668625, 0.15393654524089306, 0.045828437132784956, 0.0564042303172738, 0.08578143360752057, 0.07755581668625147, 0.06462984723854288, 0.055229142185663924, 0.04700352526439483, 0.04465334900117509, 0.052878965922444184, 0.17391304347826086, 0.7943595769682726, 0.12573443008225618, 0.07755581668625147, 0.7837837837837838, 0.8225616921269095, 0.8484136310223267, 0.9130434782608695, 0.8390129259694477, 0.800235017626322, 0.7755581668625147, 0.06698002350176263, 0.052878965922444184, 0.8225616921269095, 0.8260869565217391, 0.8296122209165687, 0.8495887191539365, 0.9388954171562868, 0.8531139835487661, 0.8472385428907168, 0.827262044653349, 0.8237367802585194, 0.8225616921269095, 0.045828437132784956, 0.038777908343125736, 0.038777908343125736, 0.038777908343125736, 0.036427732079905996, 0.038777908343125736, 0.03760282021151586, 0.038777908343125736, 0.038777908343125736, 0.038777908343125736, 0.03760282021151586, 0.05170387779083431, 0.05052878965922444, 0.05052878965922444, 0.05052878965922444, 0.03525264394829612, 0.03290246768507638, 0.0399529964747356, 0.0399529964747356, 0.0399529964747356, 0.038777908343125736, 0.03407755581668625, 0.03407755581668625, 0.03525264394829612, 0.03525264394829612, 0.03290246768507638, 0.03290246768507638, 0.03172737955346651, 0.03290246768507638, 0.03290246768507638, 0.03172737955346651, 0.03290246768507638, 0.03290246768507638, 0.03290246768507638, 0.13043478260869565, 0.03407755581668625, 0.03290246768507638, 0.03290246768507638, 0.03172737955346651, 0.02937720329024677, 0.02937720329024677, 0.025851938895417155, 0.02937720329024677, 0.03407755581668625, 0.041128084606345476, 0.04230317273795535, 0.04230317273795535, 0.045828437132784956, 0.04465334900117509, 0.045828437132784956, 0.0481786133960047, 0.0481786133960047, 0.04935370152761457, 0.04935370152761457, 0.04935370152761457, 0.10575793184488837, 0.05405405405405406, 0.052878965922444184, 0.052878965922444184, 0.05405405405405406, 0.055229142185663924, 0.055229142185663924, 0.0564042303172738, 0.057579318448883664, 0.06110458284371328, 0.06227967097532315, 0.07403055229142186, 0.07403055229142186, 0.0799059929494712, 0.08930669800235018, 0.09400705052878966, 0.11163337250293771, 0.11398354876615746, 0.12103407755581669, 0.12690951821386603, 0.12925969447708577, 0.1410105757931845, 0.1410105757931845, 0.1410105757931845, 0.14336075205640422, 0.1445358401880141, 0.14806110458284372, 0.15158636897767333, 0.1562867215041128, 0.15863689776733256, 0.16333725029377202, 0.17391304347826086, 0.21739130434782608, 0.2702702702702703, 0.5217391304347826, 0.8660399529964747], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rho_RNA_bind.gap.json b/pfam_gap_rates/Rho_RNA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1f972d3666422d8ed99c940d7b88bd4b85b4629
--- /dev/null
+++ b/pfam_gap_rates/Rho_RNA_bind.gap.json
@@ -0,0 +1 @@
+{"family": "Rho_RNA_bind", "n_seqs": 1665, "length": 82, "gap_rates": [0.7957957957957958, 0.07567567567567568, 0.005405405405405406, 0.004204204204204204, 0.004204204204204204, 0.004204204204204204, 0.004204204204204204, 0.004204204204204204, 0.11891891891891893, 0.9387387387387387, 0.0036036036036036037, 0.006006006006006006, 0.006006006006006006, 0.0036036036036036037, 0.0036036036036036037, 0.0024024024024024023, 0.0024024024024024023, 0.0024024024024024023, 0.013213213213213212, 0.4498498498498498, 0.44684684684684683, 0.03303303303303303, 0.007207207207207207, 0.009009009009009009, 0.007807807807807808, 0.006606606606606606, 0.003003003003003003, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0012012012012012011, 0.0006006006006006006, 0.0006006006006006006, 0.0018018018018018018, 0.0006006006006006006, 0.0006006006006006006, 0.0006006006006006006, 0.0006006006006006006, 0.0006006006006006006, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006006006006006006, 0.0, 0.0, 0.0006006006006006006, 0.0006006006006006006, 0.8756756756756757, 0.9069069069069069, 0.9351351351351351, 0.9207207207207208, 0.8762762762762762, 0.872072072072072, 0.0024024024024024023, 0.016216216216216217, 0.004204204204204204, 0.003003003003003003, 0.0024024024024024023, 0.0024024024024024023, 0.0036036036036036037, 0.0012012012012012011, 0.0012012012012012011, 0.0012012012012012011, 0.0012012012012012011, 0.0012012012012012011, 0.0012012012012012011, 0.0012012012012012011, 0.0012012012012012011, 0.0012012012012012011, 0.0012012012012012011, 0.0018018018018018018, 0.02042042042042042, 0.08048048048048048, 0.2774774774774775], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RibD_C.gap.json b/pfam_gap_rates/RibD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..244dcd4b4f66ac9d69b60eca9b01f48e171eac36
--- /dev/null
+++ b/pfam_gap_rates/RibD_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonuc_red_2_N.gap.json b/pfam_gap_rates/Ribonuc_red_2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f52e63f611500ba96f360b8c81e742d588383654
--- /dev/null
+++ b/pfam_gap_rates/Ribonuc_red_2_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ribonuc_red_2_N", "n_seqs": 372, "length": 120, "gap_rates": [0.14516129032258066, 0.06989247311827956, 0.03225806451612903, 0.02956989247311828, 0.02956989247311828, 0.01881720430107527, 0.013440860215053764, 0.008064516129032258, 0.005376344086021506, 0.005376344086021506, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.013440860215053764, 0.013440860215053764, 0.7365591397849462, 0.024193548387096774, 0.03494623655913978, 0.005376344086021506, 0.026881720430107527, 0.12365591397849462, 0.6209677419354839, 0.6236559139784946, 0.6263440860215054, 0.6263440860215054, 0.6532258064516129, 0.6774193548387096, 0.6854838709677419, 0.7016129032258065, 0.706989247311828, 0.7043010752688172, 0.6989247311827957, 0.6827956989247311, 0.6720430107526881, 0.6263440860215054, 0.6263440860215054, 0.6236559139784946, 0.6236559139784946, 0.6209677419354839, 0.5376344086021505, 0.5913978494623656, 0.5967741935483871, 0.5913978494623656, 0.5752688172043011, 0.5752688172043011, 0.5672043010752689, 0.5510752688172043, 0.9032258064516129, 0.8897849462365591, 0.5483870967741935, 0.5483870967741935, 0.543010752688172, 0.532258064516129, 0.510752688172043, 0.43548387096774194, 0.3064516129032258, 0.23118279569892472, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258, 0.008064516129032258, 0.002688172043010753, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonuc_red_lgN.gap.json b/pfam_gap_rates/Ribonuc_red_lgN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6977e0b4e029d4dd29e3cf0ecf03e948028ba2a
--- /dev/null
+++ b/pfam_gap_rates/Ribonuc_red_lgN.gap.json
@@ -0,0 +1 @@
+{"family": "Ribonuc_red_lgN", "n_seqs": 2217, "length": 85, "gap_rates": [0.9377537212449256, 0.3870094722598105, 0.17410915651781686, 0.10464591790708164, 0.08976093820478123, 0.07036535859269283, 0.04420387911592242, 0.03924221921515562, 0.031574199368516014, 0.028416779431664412, 0.02796571944068561, 0.02751465944970681, 0.02706359945872801, 0.026612539467749212, 0.02616147947677041, 0.02616147947677041, 0.02571041948579161, 0.07622913847541724, 0.07216959855660803, 0.07397383852052324, 0.2963464140730717, 0.07216959855660803, 0.7419936851601263, 0.17140279657194407, 0.04961659900766802, 0.04555705908885882, 0.02210193955796121, 0.018944519621109608, 0.0040595399188092015, 0.0040595399188092015, 0.0040595399188092015, 0.0013531799729364006, 0.0013531799729364006, 0.0009021199819576004, 0.0009021199819576004, 0.0013531799729364006, 0.0013531799729364006, 0.0013531799729364006, 0.0013531799729364006, 0.0009021199819576004, 0.0009021199819576004, 0.05142083897158322, 0.451511050969779, 0.4506089309878214, 0.4736129905277402, 0.6549391069012178, 0.8254397834912043, 0.8741542625169147, 0.930085701398286, 0.8651330626973387, 0.7771763644564728, 0.6544880469102391, 0.017591339648173207, 0.005412719891745603, 0.0018042399639152007, 0.0013531799729364006, 0.0013531799729364006, 0.0018042399639152007, 0.0013531799729364006, 0.0013531799729364006, 0.0013531799729364006, 0.0013531799729364006, 0.0013531799729364006, 0.0013531799729364006, 0.0022552999548940008, 0.0022552999548940008, 0.0022552999548940008, 0.02074875958502481, 0.0027063599458728013, 0.0027063599458728013, 0.0036084799278304014, 0.009021199819576003, 0.018042399639152006, 0.02525935949481281, 0.02751465944970681, 0.02751465944970681, 0.02751465944970681, 0.02886783942264321, 0.030221019395579612, 0.03067207938655841, 0.03473161930536761, 0.04420387911592242, 0.12133513757329725, 0.2697338746053225, 0.8529544429409112], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonuclease_3.gap.json b/pfam_gap_rates/Ribonuclease_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee62311e3d05579df369cde91dd86291cdfb71b3
--- /dev/null
+++ b/pfam_gap_rates/Ribonuclease_3.gap.json
@@ -0,0 +1 @@
+{"family": "Ribonuclease_3", "n_seqs": 2153, "length": 166, "gap_rates": [0.3673943334881561, 0.10218300046446818, 0.028797027403622853, 0.01672085462145843, 0.014398513701811427, 0.013005109150023224, 0.013005109150023224, 0.012540640966093822, 0.01114723641430562, 0.01114723641430562, 0.009289363678588018, 0.008824895494658615, 0.007895959126799815, 0.0074314909428704135, 0.0074314909428704135, 0.0074314909428704135, 0.0074314909428704135, 0.006967022758941012, 0.006967022758941012, 0.008824895494658615, 0.012540640966093822, 0.3228053878309336, 0.07524384579656293, 0.01672085462145843, 0.02183000464468184, 0.010682768230376219, 0.006502554575011612, 0.0041802136553646075, 0.0041802136553646075, 0.005109150023223409, 0.0037157454714352067, 0.005109150023223409, 0.0037157454714352067, 0.0041802136553646075, 0.00557361820715281, 0.0037157454714352067, 0.002786809103576405, 0.0037157454714352067, 0.0041802136553646075, 0.004644681839294009, 0.004644681839294009, 0.0041802136553646075, 0.005109150023223409, 0.00557361820715281, 0.00557361820715281, 0.00557361820715281, 0.00557361820715281, 0.00557361820715281, 0.009289363678588018, 0.19461216906641896, 0.19228982814677195, 0.019043195541105434, 0.016256386437529028, 0.016256386437529028, 0.01672085462145843, 0.018114259173246633, 0.018578727357176035, 0.018114259173246633, 0.09150023223409197, 0.15281003251277286, 0.14816535067347886, 0.15281003251277286, 0.15373896888063168, 0.14305620065025546, 0.13980492336274966, 0.14259173246632606, 0.14491407338597306, 0.14491407338597306, 0.14444960520204367, 0.14259173246632606, 0.1658151416627961, 0.2652113330236879, 0.4849047840222945, 0.6535067347886669, 0.7013469577333953, 0.7487227124941942, 0.7872735717603344, 0.8207152810032513, 0.8392940083604273, 0.8583372039015328, 0.8745935903390618, 0.8959591267998143, 0.917789131444496, 0.9345099860659545, 0.9396191360891779, 0.9252206223873665, 0.9126799814212726, 0.8838829540176498, 0.8694844403158384, 0.8467254993032978, 0.8290757083139805, 0.8002786809103576, 0.7668369716674408, 0.7222480260102183, 0.6692986530422667, 0.6418950301904319, 0.5044124477473293, 0.23780771017185323, 0.22573153738968882, 0.21411983279145377, 0.19786344635392475, 0.20250812819321876, 0.20018578727357175, 0.19739897816999535, 0.9484440315838365, 0.22805387830933582, 0.22340919647004182, 0.04412447747329308, 0.6493265211333024, 0.6706920575940548, 0.6832326985601487, 0.706920575940548, 0.7347886669763122, 0.772875058058523, 0.7970274036228518, 0.8197863446353925, 0.8388295401764979, 0.8583372039015328, 0.8927078495123084, 0.9043195541105434, 0.9117510450534139, 0.9168601950766373, 0.927078495123084, 0.9354389224338133, 0.9419414770088249, 0.9470506270320483, 0.9493729679516953, 0.9451927542963307, 0.9382257315373896, 0.9303297724105899, 0.9219693450998606, 0.9150023223409196, 0.9075708313980493, 0.89921040408732, 0.8820250812819321, 0.8453320947515095, 0.8272178355782629, 0.8058522991175104, 0.7928471899674873, 0.761263353460288, 0.7180678123548537, 0.6943799349744543, 0.6781235485369252, 0.655829075708314, 0.6470041802136554, 0.03529958197863446, 0.03297724105898746, 0.03297724105898746, 0.03297724105898746, 0.03297724105898746, 0.03204830469112866, 0.03204830469112866, 0.032512772875058056, 0.03297724105898746, 0.03344170924291686, 0.03390617742684626, 0.03390617742684626, 0.034370645610775664, 0.034370645610775664, 0.03529958197863446, 0.037621922898281465, 0.04737575476079889, 0.06409660938225732, 0.11658151416627961, 0.2610311193683233, 0.6525777984208082], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonuclease_P.gap.json b/pfam_gap_rates/Ribonuclease_P.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccbb17af2bbd370997a8ff4343e7a7e006cdaa79
--- /dev/null
+++ b/pfam_gap_rates/Ribonuclease_P.gap.json
@@ -0,0 +1 @@
+{"family": "Ribonuclease_P", "n_seqs": 2004, "length": 126, "gap_rates": [0.4481037924151697, 0.38223552894211577, 0.32984031936127745, 0.29740518962075846, 0.22105788423153694, 0.17864271457085829, 0.16816367265469062, 0.16117764471057885, 0.14920159680638723, 0.12924151696606787, 0.12375249500998003, 0.12075848303393213, 0.12025948103792415, 0.11626746506986028, 0.11427145708582834, 0.11177644710578842, 0.17265469061876249, 0.10678642714570859, 0.10029940119760479, 0.09580838323353294, 0.09481037924151696, 0.09081836327345309, 0.09131736526946108, 0.08283433133732535, 0.08083832335329341, 0.0783433133732535, 0.07235528942115768, 0.06986027944111776, 0.06536926147704591, 0.05588822355289421, 0.05389221556886228, 0.05239520958083832, 0.05189620758483034, 0.04890219560878244, 0.18013972055888225, 0.10429141716566866, 0.0813373253493014, 0.07335329341317365, 0.08782435129740519, 0.07934131736526946, 0.7639720558882236, 0.8478043912175649, 0.8887225548902196, 0.9221556886227545, 0.9416167664670658, 0.9486027944111777, 0.9346307385229541, 0.9041916167664671, 0.8717564870259481, 0.812375249500998, 0.7130738522954092, 0.43862275449101795, 0.02245508982035928, 0.016467065868263474, 0.013972055888223553, 0.0124750499001996, 0.0124750499001996, 0.011477045908183632, 0.007984031936127744, 0.007984031936127744, 0.007984031936127744, 0.0074850299401197605, 0.005988023952095809, 0.00499001996007984, 0.6087824351297405, 0.0054890219560878245, 0.0054890219560878245, 0.003992015968063872, 0.003493013972055888, 0.003493013972055888, 0.003493013972055888, 0.0029940119760479044, 0.00249500998003992, 0.0029940119760479044, 0.003992015968063872, 0.00249500998003992, 0.00249500998003992, 0.0014970059880239522, 0.001996007984031936, 0.001996007984031936, 0.001996007984031936, 0.001996007984031936, 0.014471057884231538, 0.015469061876247504, 0.01347305389221557, 0.011976047904191617, 0.007984031936127744, 0.0124750499001996, 0.23253493013972057, 0.8992015968063872, 0.9301397205588823, 0.9446107784431138, 0.9166666666666666, 0.8073852295409182, 0.03243512974051896, 0.029940119760479042, 0.02694610778443114, 0.026447105788423155, 0.02594810379241517, 0.02694610778443114, 0.02694610778443114, 0.02844311377245509, 0.029940119760479042, 0.03942115768463074, 0.03842315369261477, 0.10828343313373254, 0.07435129740518961, 0.9456087824351297, 0.04940119760479042, 0.0499001996007984, 0.05139720558882235, 0.05439121756487026, 0.056387225548902194, 0.058383233532934134, 0.06037924151696607, 0.062375249500998, 0.0658682634730539, 0.07135728542914171, 0.07385229540918163, 0.08333333333333333, 0.09381237524950099, 0.11826347305389222, 0.1536926147704591, 0.20958083832335328, 0.32435129740518964, 0.5044910179640718], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L13.gap.json b/pfam_gap_rates/Ribosomal_L13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b81a11cd447817746c288efa949c933d5d91f9c
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L13.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L13", "n_seqs": 3054, "length": 127, "gap_rates": [0.466928618205632, 0.24230517354289458, 0.16797642436149313, 0.09201047806155861, 0.08153241650294696, 0.0779305828421742, 0.07596594629993451, 0.07465618860510806, 0.07269155206286837, 0.07039947609692207, 0.05697445972495088, 0.05435494433529797, 0.054027504911591355, 0.053700065487884745, 0.054027504911591355, 0.053700065487884745, 0.053700065487884745, 0.05533726260641781, 0.05468238375900458, 0.055992141453831044, 0.06221349050425671, 0.07301899148657498, 0.07039947609692207, 0.09299279633267846, 0.15062213490504256, 0.15225933202357564, 0.15291421087098886, 0.15291421087098886, 0.15422396856581533, 0.15193189259986903, 0.15160445317616242, 0.14931237721021612, 0.14079895219384414, 0.12770137524557956, 0.12311722331368696, 0.09528487229862476, 0.0275049115913556, 0.02226588081204977, 0.021611001964636542, 0.01997380484610347, 0.017026850032743943, 0.017354289456450556, 0.01768172888015717, 0.017026850032743943, 0.01669941060903733, 0.017026850032743943, 0.01669941060903733, 0.01669941060903733, 0.017026850032743943, 0.017026850032743943, 0.016371971185330715, 0.017026850032743943, 0.017026850032743943, 0.017026850032743943, 0.019646365422396856, 0.02226588081204977, 0.021283562540929928, 0.0206286836935167, 0.01768172888015717, 0.017354289456450556, 0.017026850032743943, 0.026850032743942372, 0.019646365422396856, 0.019646365422396856, 0.020956123117223315, 0.021938441388343156, 0.017354289456450556, 0.018009168303863784, 0.017026850032743943, 0.018664047151277015, 0.018664047151277015, 0.020301244269810084, 0.020301244269810084, 0.023575638506876228, 0.02226588081204977, 0.025540275049115914, 0.0252128356254093, 0.02226588081204977, 0.01768172888015717, 0.014407334643091027, 0.01309757694826457, 0.01309757694826457, 0.014079895219384414, 0.0137524557956778, 0.9430255402750491, 0.01309757694826457, 0.0114603798297315, 0.009823182711198428, 0.010150622134905042, 0.010478061558611657, 0.010805500982318271, 0.010805500982318271, 0.011132940406024885, 0.011132940406024885, 0.011132940406024885, 0.011132940406024885, 0.0114603798297315, 0.011787819253438114, 0.014407334643091027, 0.012115258677144728, 0.012442698100851343, 0.9436804191224624, 0.012770137524557957, 0.01309757694826457, 0.014407334643091027, 0.015062213490504257, 0.014407334643091027, 0.014407334643091027, 0.014407334643091027, 0.014407334643091027, 0.014734774066797643, 0.017354289456450556, 0.0252128356254093, 0.058611656843483954, 0.060576293385723644, 0.06385068762278978, 0.0825147347740668, 0.09954158480681075, 0.10674525212835625, 0.11263916175507531, 0.12082514734774066, 0.13425016371971185, 0.1738703339882122, 0.21872953503601833, 0.2861820563195809, 0.3654223968565815, 0.5383104125736738], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L21e.gap.json b/pfam_gap_rates/Ribosomal_L21e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8601907298f9bdb51cf8eb66819b55710957924
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L21e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L21e", "n_seqs": 686, "length": 97, "gap_rates": [0.5553935860058309, 0.41545189504373176, 0.2755102040816326, 0.26384839650145775, 0.26239067055393583, 0.25801749271137026, 0.2521865889212828, 0.2521865889212828, 0.25072886297376096, 0.2478134110787172, 0.24489795918367346, 0.2230320699708455, 0.22157434402332363, 0.21574344023323616, 0.21865889212827988, 0.21865889212827988, 0.21865889212827988, 0.21865889212827988, 0.21720116618075802, 0.21574344023323616, 0.21428571428571427, 0.20845481049562684, 0.21282798833819241, 0.20408163265306123, 0.20116618075801748, 0.20116618075801748, 0.19533527696793002, 0.19533527696793002, 0.1239067055393586, 0.1239067055393586, 0.119533527696793, 0.11661807580174927, 0.1151603498542274, 0.11370262390670553, 0.11370262390670553, 0.10932944606413994, 0.10932944606413994, 0.10787172011661808, 0.10932944606413994, 0.10932944606413994, 0.10932944606413994, 0.10641399416909621, 0.09475218658892129, 0.09329446064139942, 0.09329446064139942, 0.09183673469387756, 0.09183673469387756, 0.08892128279883382, 0.08892128279883382, 0.02478134110787172, 0.023323615160349854, 0.023323615160349854, 0.02478134110787172, 0.02478134110787172, 0.02478134110787172, 0.02478134110787172, 0.023323615160349854, 0.021865889212827987, 0.021865889212827987, 0.02040816326530612, 0.016034985422740525, 0.016034985422740525, 0.1282798833819242, 0.12244897959183673, 0.01749271137026239, 0.016034985422740525, 0.016034985422740525, 0.016034985422740525, 0.014577259475218658, 0.016034985422740525, 0.013119533527696793, 0.011661807580174927, 0.02040816326530612, 0.011661807580174927, 0.01020408163265306, 0.01020408163265306, 0.013119533527696793, 0.01020408163265306, 0.01020408163265306, 0.016034985422740525, 0.023323615160349854, 0.13994169096209913, 0.13994169096209913, 0.027696793002915453, 0.027696793002915453, 0.027696793002915453, 0.027696793002915453, 0.030612244897959183, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.033527696793002916, 0.033527696793002916, 0.033527696793002916, 0.033527696793002916, 0.09475218658892129, 0.26676384839650147], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L23.gap.json b/pfam_gap_rates/Ribosomal_L23.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6fd2e4e8f5200facc3d01cc417fa3951cbc27493
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L23.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L23", "n_seqs": 3157, "length": 92, "gap_rates": [0.4374406081723155, 0.19638897687678175, 0.15394361735825152, 0.13620525815647766, 0.12955337345581247, 0.12353500158378207, 0.12131770668356034, 0.12005068102629078, 0.119417168197656, 0.11846689895470383, 0.11371555273994298, 0.11244852708267343, 0.11149825783972125, 0.10231232182451695, 0.09661070636680393, 0.09217611656636047, 0.08837503959455179, 0.08457396262274311, 0.6278112131770668, 0.04783021856192588, 0.020905923344947737, 0.0066518847006651885, 0.0066518847006651885, 0.0066518847006651885, 0.0066518847006651885, 0.0063351282863477985, 0.006018371872030409, 0.005701615457713019, 0.004751346214760849, 0.004434589800443459, 0.004434589800443459, 0.004434589800443459, 0.004434589800443459, 0.003801076971808679, 0.0028508077288565093, 0.0025340513145391194, 0.0031675641431738993, 0.0025340513145391194, 0.0028508077288565093, 0.0019005384859043396, 0.0019005384859043396, 0.0012670256572695597, 0.0022172949002217295, 0.9499524865378524, 0.0022172949002217295, 0.0025340513145391194, 0.0028508077288565093, 0.0031675641431738993, 0.003484320557491289, 0.003801076971808679, 0.004751346214760849, 0.005068102629078239, 0.005384859043395629, 0.0063351282863477985, 0.007285397529299968, 0.008235666772252138, 0.010452961672473868, 0.011403230915426037, 0.017421602787456445, 0.023123218245169466, 0.026924295216978145, 0.9040228064618309, 0.037694013303769404, 0.14254038644282546, 0.20209059233449478, 0.2043078872347165, 0.19037060500475134, 0.8542920494140006, 0.9014887551472918, 0.8289515362686094, 0.19005384859043395, 0.18973709217611656, 0.18942033576179917, 0.19037060500475134, 0.1887868229331644, 0.18466898954703834, 0.1824516946468166, 0.18023439974659486, 0.17770034843205576, 0.13462147608489072, 0.14760848907190371, 0.15584415584415584, 0.16281279695913842, 0.17770034843205576, 0.21507760532150777, 0.2359835286664555, 0.2508710801393728, 0.2743110547988597, 0.328159645232816, 0.45739626227431107, 0.5125118783655369, 0.7250554323725056], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L29e.gap.json b/pfam_gap_rates/Ribosomal_L29e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77f6d7ff8b09a39cbc2328f4db1b65fc72f476ea
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L29e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L29e", "n_seqs": 353, "length": 40, "gap_rates": [0.09631728045325778, 0.0679886685552408, 0.0679886685552408, 0.0679886685552408, 0.056657223796033995, 0.053824362606232294, 0.053824362606232294, 0.053824362606232294, 0.04815864022662889, 0.0453257790368272, 0.0339943342776204, 0.019830028328611898, 0.019830028328611898, 0.0169971671388102, 0.014164305949008499, 0.014164305949008499, 0.0113314447592068, 0.014164305949008499, 0.0028328611898017, 0.0, 0.0, 0.0056657223796034, 0.0226628895184136, 0.028328611898016998, 0.025495750708215296, 0.025495750708215296, 0.031161473087818695, 0.025495750708215296, 0.025495750708215296, 0.028328611898016998, 0.028328611898016998, 0.028328611898016998, 0.036827195467422094, 0.06232294617563739, 0.0708215297450425, 0.07365439093484419, 0.0764872521246459, 0.07932011331444759, 0.07932011331444759, 0.09348441926345609], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L32e.gap.json b/pfam_gap_rates/Ribosomal_L32e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e36c491858aed6e28264d79f63c4b1719f1e6c28
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L32e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L32e", "n_seqs": 592, "length": 108, "gap_rates": [0.4341216216216216, 0.18243243243243243, 0.12837837837837837, 0.11993243243243243, 0.11486486486486487, 0.11486486486486487, 0.11486486486486487, 0.11148648648648649, 0.10641891891891891, 0.10472972972972973, 0.10304054054054054, 0.10135135135135136, 0.09966216216216216, 0.09628378378378379, 0.0945945945945946, 0.08952702702702703, 0.08614864864864864, 0.08277027027027027, 0.08277027027027027, 0.08277027027027027, 0.08445945945945946, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.07939189189189189, 0.0777027027027027, 0.07601351351351351, 0.07263513513513513, 0.07094594594594594, 0.07601351351351351, 0.07939189189189189, 0.0777027027027027, 0.0777027027027027, 0.0777027027027027, 0.08614864864864864, 0.08445945945945946, 0.08277027027027027, 0.08108108108108109, 0.057432432432432436, 0.057432432432432436, 0.057432432432432436, 0.057432432432432436, 0.057432432432432436, 0.057432432432432436, 0.05067567567567568, 0.048986486486486486, 0.048986486486486486, 0.05067567567567568, 0.048986486486486486, 0.05574324324324324, 0.052364864864864864, 0.05067567567567568, 0.04222972972972973, 0.04391891891891892, 0.04222972972972973, 0.04054054054054054, 0.04222972972972973, 0.04391891891891892, 0.04391891891891892, 0.04222972972972973, 0.04054054054054054, 0.04054054054054054, 0.04222972972972973, 0.04054054054054054, 0.04222972972972973, 0.04391891891891892, 0.04054054054054054, 0.037162162162162164, 0.03885135135135135, 0.04222972972972973, 0.04054054054054054, 0.04222972972972973, 0.04054054054054054, 0.037162162162162164, 0.037162162162162164, 0.04391891891891892, 0.04391891891891892, 0.18074324324324326, 0.18412162162162163, 0.05574324324324324, 0.05574324324324324, 0.052364864864864864, 0.05405405405405406, 0.05574324324324324, 0.05574324324324324, 0.07094594594594594, 0.05912162162162162, 0.05912162162162162, 0.060810810810810814, 0.060810810810810814, 0.0625, 0.0625, 0.0625, 0.06418918918918919, 0.06756756756756757, 0.07094594594594594, 0.07094594594594594, 0.07601351351351351, 0.0777027027027027, 0.08277027027027027, 0.08614864864864864, 0.09121621621621621, 0.0929054054054054, 0.0929054054054054, 0.09797297297297297, 0.10135135135135136, 0.10641891891891891, 0.13175675675675674], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L5_C.gap.json b/pfam_gap_rates/Ribosomal_L5_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dcfdbb565e5c952cd4729bbce19a0ebb2b90cad1
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L5_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L5_C", "n_seqs": 2926, "length": 108, "gap_rates": [0.24743677375256323, 0.01674641148325359, 0.010594668489405332, 0.009911141490088858, 0.009227614490772385, 0.00786056049213944, 0.007177033492822967, 0.00683526999316473, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006151742993848257, 0.005126452494873548, 0.004784688995215311, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.003417634996582365, 0.003417634996582365, 0.003417634996582365, 0.0030758714969241286, 0.002734107997265892, 0.004442925495557075, 0.004784688995215311, 0.004101161995898838, 0.004101161995898838, 0.17361585782638414, 0.17293233082706766, 0.17259056732740943, 0.17190704032809295, 0.17088174982911825, 0.17088174982911825, 0.029733424470266577, 0.014354066985645933, 0.009227614490772385, 0.003417634996582365, 0.003417634996582365, 0.0030758714969241286, 0.0037593984962406013, 0.003417634996582365, 0.0037593984962406013, 0.003417634996582365, 0.003417634996582365, 0.0023923444976076554, 0.002050580997949419, 0.002050580997949419, 0.0023923444976076554, 0.002734107997265892, 0.0030758714969241286, 0.003417634996582365, 0.003417634996582365, 0.0037593984962406013, 0.1442241968557758, 0.003417634996582365, 0.003417634996582365, 0.004442925495557075, 0.005126452494873548, 0.00580997949419002, 0.00580997949419002, 0.00580997949419002, 0.007177033492822967, 0.00786056049213944, 0.014012303485987697, 0.00888585099111415, 0.009227614490772385, 0.009227614490772385, 0.009569377990430622, 0.009911141490088858, 0.009911141490088858, 0.009911141490088858, 0.010252904989747095, 0.010936431989063569, 0.01161995898838004, 0.01161995898838004, 0.011961722488038277, 0.849624060150376, 0.9347231715652768, 0.849624060150376, 0.8479152426520847, 0.014012303485987697, 0.06151742993848257, 0.021189336978810664, 0.8749145591250854, 0.8790157211209843, 0.885850991114149, 0.8868762816131237, 0.9097744360902256, 0.8899521531100478, 0.8868762816131237, 0.8841421736158578, 0.8769651401230348, 0.8738892686261107, 0.032467532467532464, 0.06561859193438141, 0.06630211893369788, 0.16267942583732056, 0.0748462064251538, 0.07689678742310321, 0.07758031442241968, 0.08168147641831852, 0.08339029391660971, 0.08544087491455912, 0.08851674641148326, 0.09671907040328093, 0.15550239234449761], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S16.gap.json b/pfam_gap_rates/Ribosomal_S16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..510f40bf84fb9dab518ac45f786b06cfd4f48cb4
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S16.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S16", "n_seqs": 2497, "length": 63, "gap_rates": [0.09130957148578293, 0.04485382458950741, 0.022426912294753704, 0.01922306768121746, 0.017220664797757308, 0.01682018422106528, 0.01682018422106528, 0.015618742490989187, 0.013215859030837005, 0.012815378454144974, 0.012014417300760914, 0.010812975570684821, 0.010412494993992792, 0.00841009211053264, 0.007208650380456548, 0.006007208650380457, 0.006808169803764518, 0.006808169803764518, 0.006808169803764518, 0.006007208650380457, 0.006007208650380457, 0.006007208650380457, 0.005606728073688426, 0.004805766920304365, 0.004805766920304365, 0.004405286343612335, 0.004405286343612335, 0.004004805766920304, 0.0032038446135362435, 0.0032038446135362435, 0.0032038446135362435, 0.0032038446135362435, 0.002803364036844213, 0.002803364036844213, 0.9114937925510612, 0.006007208650380457, 0.006808169803764518, 0.020024028834601523, 0.09531437725270324, 0.1381657989587505, 0.36243492190628757, 0.907889467360833, 0.6900280336403685, 0.31357629154985983, 0.011213456147376852, 0.005606728073688426, 0.004004805766920304, 0.004004805766920304, 0.004004805766920304, 0.004004805766920304, 0.004405286343612335, 0.004405286343612335, 0.004805766920304365, 0.005606728073688426, 0.006407689227072487, 0.006407689227072487, 0.006407689227072487, 0.014016820184221065, 0.017220664797757308, 0.01882258710452543, 0.020024028834601523, 0.024028834601521828, 0.030837004405286344], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S25.gap.json b/pfam_gap_rates/Ribosomal_S25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ed6f91bf282491bf355b3ba542d719d55720c51
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S25.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S25", "n_seqs": 462, "length": 102, "gap_rates": [0.9458874458874459, 0.7965367965367965, 0.6125541125541125, 0.49567099567099565, 0.44805194805194803, 0.3961038961038961, 0.3463203463203463, 0.3181818181818182, 0.29004329004329005, 0.2792207792207792, 0.25757575757575757, 0.24242424242424243, 0.19480519480519481, 0.16233766233766234, 0.12987012987012986, 0.11688311688311688, 0.10606060606060606, 0.10173160173160173, 0.09523809523809523, 0.1038961038961039, 0.9242424242424242, 0.06926406926406926, 0.06493506493506493, 0.045454545454545456, 0.047619047619047616, 0.04112554112554113, 0.03896103896103896, 0.03896103896103896, 0.0367965367965368, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.032467532467532464, 0.03896103896103896, 0.04329004329004329, 0.030303030303030304, 0.030303030303030304, 0.023809523809523808, 0.021645021645021644, 0.021645021645021644, 0.023809523809523808, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.021645021645021644, 0.017316017316017316, 0.017316017316017316, 0.015151515151515152, 0.021645021645021644, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.017316017316017316, 0.032467532467532464, 0.030303030303030304, 0.025974025974025976, 0.023809523809523808, 0.025974025974025976, 0.02813852813852814, 0.02813852813852814, 0.02813852813852814, 0.02813852813852814, 0.023809523809523808, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.023809523809523808, 0.025974025974025976, 0.030303030303030304, 0.032467532467532464, 0.0367965367965368, 0.0367965367965368, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.04112554112554113, 0.05411255411255411, 0.05411255411255411, 0.05844155844155844, 0.06060606060606061, 0.06493506493506493, 0.0735930735930736, 0.07792207792207792, 0.08225108225108226, 0.08008658008658008, 0.08008658008658008, 0.08441558441558442, 0.08658008658008658, 0.08874458874458875, 0.09090909090909091, 0.11471861471861472, 0.21645021645021645, 0.4675324675324675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S27.gap.json b/pfam_gap_rates/Ribosomal_S27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ef381cb4429e67293f3da2f24dd15d5c46137f1
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S27.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S27", "n_seqs": 456, "length": 48, "gap_rates": [0.2412280701754386, 0.12938596491228072, 0.08552631578947369, 0.07017543859649122, 0.05701754385964912, 0.046052631578947366, 0.03728070175438596, 0.03728070175438596, 0.03728070175438596, 0.9210526315789473, 0.1600877192982456, 0.03508771929824561, 0.03070175438596491, 0.03070175438596491, 0.021929824561403508, 0.019736842105263157, 0.013157894736842105, 0.010964912280701754, 0.010964912280701754, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.2894736842105263, 0.3026315789473684, 0.017543859649122806, 0.07675438596491228, 0.07017543859649122, 0.015350877192982455, 0.013157894736842105, 0.013157894736842105, 0.010964912280701754, 0.010964912280701754, 0.010964912280701754, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.9429824561403509, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02412280701754386, 0.043859649122807015, 0.08114035087719298], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S3_C.gap.json b/pfam_gap_rates/Ribosomal_S3_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b66281ed5ada35701f4ccafecee9b3a25970609
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S3_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S3_C", "n_seqs": 2833, "length": 86, "gap_rates": [0.20543593363925167, 0.06636074832333215, 0.04200494175785387, 0.03529827038475115, 0.03494528768090364, 0.0338863395693611, 0.03141546064242852, 0.025061771973173313, 0.02223791034239322, 0.020825979527003175, 0.020472996823155665, 0.020472996823155665, 0.019767031415460642, 0.01941404871161313, 0.015178256265442993, 0.014825273561595482, 0.013766325450052947, 0.013060360042357924, 0.01200141193081539, 0.01200141193081539, 0.01200141193081539, 0.01200141193081539, 0.008471584892340275, 0.0063536886692552065, 0.006000705965407695, 0.9202259089304624, 0.004941757853865161, 0.004941757853865161, 0.004941757853865161, 0.005294740557712672, 0.005294740557712672, 0.005294740557712672, 0.004588775150017649, 0.004588775150017649, 0.004235792446170138, 0.004235792446170138, 0.003882809742322626, 0.003882809742322626, 0.003882809742322626, 0.003882809742322626, 0.17472643840451818, 0.003882809742322626, 0.0035298270384751147, 0.0028238616307800918, 0.0028238616307800918, 0.0028238616307800918, 0.0031768443346276033, 0.0024708789269325803, 0.0031768443346276033, 0.0035298270384751147, 0.0035298270384751147, 0.0035298270384751147, 0.0035298270384751147, 0.0031768443346276033, 0.0031768443346276033, 0.0035298270384751147, 0.0035298270384751147, 0.830921284857042, 0.8298623367454995, 0.004941757853865161, 0.004941757853865161, 0.004941757853865161, 0.004941757853865161, 0.005294740557712672, 0.005294740557712672, 0.005294740557712672, 0.0063536886692552065, 0.0070596540769502295, 0.0070596540769502295, 0.008118602188492764, 0.007765619484645252, 0.008471584892340275, 0.008824567596187787, 0.00953053300388281, 0.010589481115425344, 0.010589481115425344, 0.011648429226967879, 0.01200141193081539, 0.012354394634662902, 0.013413342746205436, 0.013413342746205436, 0.014119308153900459, 0.01447229085774797, 0.015884221673138015, 0.01729615248852806, 0.025061771973173313], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S9.gap.json b/pfam_gap_rates/Ribosomal_S9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f72de77d93c5e4ffc373eed9707a221cefea5c2
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S9.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S9", "n_seqs": 3062, "length": 137, "gap_rates": [0.0643370346178968, 0.0519268451992162, 0.04408883082952319, 0.04082299150881777, 0.04016982364467668, 0.0395166557805356, 0.0395166557805356, 0.039190071848465055, 0.039190071848465055, 0.039190071848465055, 0.039190071848465055, 0.03625081645983018, 0.03527106466361855, 0.032658393207054215, 0.031352057478772045, 0.9425212279555846, 0.0310254735467015, 0.0310254735467015, 0.0310254735467015, 0.030372305682560417, 0.02939255388634879, 0.02906596995427825, 0.027433050293925537, 0.02775963422599608, 0.027106466361854997, 0.026779882429784456, 0.02612671456564337, 0.024820378837361202, 0.02906596995427825, 0.17015022860875245, 0.028412802090137166, 0.9353363814500326, 0.025473546701502287, 0.045068582625734814, 0.02775963422599608, 0.027106466361854997, 0.025473546701502287, 0.023187459177008492, 0.02155453951665578, 0.020248203788373612, 0.018288700195950358, 0.017308948399738733, 0.017308948399738733, 0.017308948399738733, 0.017308948399738733, 0.017308948399738733, 0.016982364467668192, 0.016982364467668192, 0.016329196603527107, 0.018615284128020902, 0.02939255388634879, 0.016655780535597648, 0.8618549967341607, 0.8536903984323971, 0.012736773350751143, 0.012410189418680601, 0.012410189418680601, 0.012083605486610059, 0.011757021554539516, 0.011103853690398433, 0.01077726975832789, 0.011103853690398433, 0.01077726975832789, 0.012083605486610059, 0.010450685826257348, 0.010450685826257348, 0.010124101894186806, 0.011430437622468974, 0.012083605486610059, 0.011430437622468974, 0.011430437622468974, 0.012083605486610059, 0.012410189418680601, 0.012410189418680601, 0.012410189418680601, 0.011757021554539516, 0.012083605486610059, 0.012410189418680601, 0.012083605486610059, 0.01077726975832789, 0.010450685826257348, 0.010450685826257348, 0.010450685826257348, 0.010450685826257348, 0.010124101894186806, 0.01077726975832789, 0.011757021554539516, 0.7622468974526453, 0.8595689092096669, 0.8641410842586544, 0.8631613324624429, 0.8563030698889614, 0.7302416721097322, 0.018288700195950358, 0.26322664924885697, 0.024820378837361202, 0.020248203788373612, 0.019921619856303068, 0.016655780535597648, 0.016329196603527107, 0.8500979751796212, 0.8696930111038537, 0.8703461789679948, 0.8696930111038537, 0.8696930111038537, 0.8471587197909863, 0.016002612671456563, 0.017635532331809273, 0.019921619856303068, 0.019921619856303068, 0.019268451992161987, 0.019595035924232528, 0.019595035924232528, 0.019595035924232528, 0.019921619856303068, 0.019921619856303068, 0.020248203788373612, 0.020574787720444153, 0.020574787720444153, 0.021227955584585238, 0.021881123448726322, 0.022860875244937948, 0.023514043109079032, 0.023514043109079032, 0.024820378837361202, 0.025146962769431742, 0.025146962769431742, 0.025800130633572827, 0.026779882429784456, 0.026779882429784456, 0.02775963422599608, 0.028412802090137166, 0.030372305682560417, 0.031352057478772045, 0.037230568256041804, 0.03886348791639451, 0.039190071848465055], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RimK.gap.json b/pfam_gap_rates/RimK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cc6f84f4c0aa77b765f39f11f730f4f1de6c13a
--- /dev/null
+++ b/pfam_gap_rates/RimK.gap.json
@@ -0,0 +1 @@
+{"family": "RimK", "n_seqs": 1775, "length": 206, "gap_rates": [0.8856338028169014, 0.5487323943661971, 0.3752112676056338, 0.3453521126760563, 0.3397183098591549, 0.3323943661971831, 0.3256338028169014, 0.3171830985915493, 0.3126760563380282, 0.30816901408450703, 0.29746478873239435, 0.29295774647887324, 0.29183098591549295, 0.29014084507042254, 0.28619718309859155, 0.28507042253521125, 0.28056338028169014, 0.27436619718309857, 0.26647887323943664, 0.26366197183098594, 0.25971830985915495, 0.26028169014084507, 0.25859154929577466, 0.25859154929577466, 0.25859154929577466, 0.2507042253521127, 0.25971830985915495, 0.25464788732394367, 0.2507042253521127, 0.24450704225352113, 0.24394366197183098, 0.23661971830985915, 0.2315492957746479, 0.22028169014084506, 0.21859154929577465, 0.21464788732394366, 0.2264788732394366, 0.4743661971830986, 0.9442253521126761, 0.8743661971830986, 0.7267605633802817, 0.2507042253521127, 0.2332394366197183, 0.17746478873239438, 0.17408450704225353, 0.1735211267605634, 0.17295774647887324, 0.1723943661971831, 0.17183098591549295, 0.17183098591549295, 0.17183098591549295, 0.1735211267605634, 0.17295774647887324, 0.1723943661971831, 0.1695774647887324, 0.1712676056338028, 0.1707042253521127, 0.1723943661971831, 0.1707042253521127, 0.1712676056338028, 0.1735211267605634, 0.17408450704225353, 0.1707042253521127, 0.1712676056338028, 0.17183098591549295, 0.1695774647887324, 0.1695774647887324, 0.1684507042253521, 0.16732394366197184, 0.16732394366197184, 0.2264788732394366, 0.19605633802816902, 0.17746478873239438, 0.4388732394366197, 0.8709859154929578, 0.923943661971831, 0.8901408450704226, 0.5149295774647887, 0.37464788732394366, 0.16788732394366196, 0.16225352112676056, 0.15098591549295776, 0.13126760563380283, 0.10647887323943662, 0.8743661971830986, 0.9290140845070423, 0.9098591549295775, 0.8253521126760563, 0.09183098591549296, 0.08788732394366197, 0.08394366197183098, 0.08450704225352113, 0.08901408450704225, 0.10253521126760563, 0.13464788732394367, 0.2552112676056338, 0.3312676056338028, 0.29859154929577464, 0.15774647887323945, 0.9374647887323944, 0.9301408450704225, 0.09633802816901409, 0.07943661971830986, 0.07774647887323943, 0.0771830985915493, 0.07774647887323943, 0.07943661971830986, 0.07887323943661972, 0.07830985915492958, 0.07830985915492958, 0.07830985915492958, 0.07830985915492958, 0.08, 0.08056338028169015, 0.0828169014084507, 0.08169014084507042, 0.08112676056338028, 0.08394366197183098, 0.08845070422535212, 0.10647887323943662, 0.23549295774647888, 0.9245070422535211, 0.9228169014084507, 0.20338028169014086, 0.20788732394366197, 0.3526760563380282, 0.30422535211267604, 0.2264788732394366, 0.22140845070422535, 0.1780281690140845, 0.1707042253521127, 0.1684507042253521, 0.1684507042253521, 0.1707042253521127, 0.17183098591549295, 0.16732394366197184, 0.16507042253521126, 0.1667605633802817, 0.1656338028169014, 0.1628169014084507, 0.1611267605633803, 0.1588732394366197, 0.1616901408450704, 0.1571830985915493, 0.1571830985915493, 0.1571830985915493, 0.1571830985915493, 0.1571830985915493, 0.1571830985915493, 0.15661971830985916, 0.1571830985915493, 0.1571830985915493, 0.15661971830985916, 0.15661971830985916, 0.15661971830985916, 0.15661971830985916, 0.15661971830985916, 0.1571830985915493, 0.15661971830985916, 0.15774647887323945, 0.15830985915492957, 0.1571830985915493, 0.1571830985915493, 0.1571830985915493, 0.1571830985915493, 0.1571830985915493, 0.8749295774647887, 0.1571830985915493, 0.1571830985915493, 0.15774647887323945, 0.16225352112676056, 0.16225352112676056, 0.1628169014084507, 0.1645070422535211, 0.9374647887323944, 0.1645070422535211, 0.16507042253521126, 0.16619718309859155, 0.1667605633802817, 0.1667605633802817, 0.16788732394366196, 0.17183098591549295, 0.1752112676056338, 0.21690140845070421, 0.2276056338028169, 0.23661971830985915, 0.24225352112676057, 0.2591549295774648, 0.30028169014084505, 0.36056338028169016, 0.4191549295774648, 0.4112676056338028, 0.42422535211267604, 0.4473239436619718, 0.4546478873239437, 0.4602816901408451, 0.46140845070422537, 0.46535211267605636, 0.46985915492957747, 0.4743661971830986, 0.48619718309859156, 0.49070422535211267, 0.49971830985915494, 0.5301408450704226, 0.6135211267605634, 0.7577464788732394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rnk_N.gap.json b/pfam_gap_rates/Rnk_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..718027235c0c69fc2d9105a22988972df2d62a21
--- /dev/null
+++ b/pfam_gap_rates/Rnk_N.gap.json
@@ -0,0 +1 @@
+{"family": "Rnk_N", "n_seqs": 175, "length": 45, "gap_rates": [0.17714285714285713, 0.045714285714285714, 0.017142857142857144, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.08571428571428572, 0.05714285714285714, 0.84, 0.8685714285714285, 0.8228571428571428, 0.02857142857142857, 0.04, 0.08571428571428572, 0.92, 0.07428571428571429, 0.12, 0.005714285714285714, 0.011428571428571429, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.022857142857142857, 0.08, 0.32571428571428573], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rod-binding.gap.json b/pfam_gap_rates/Rod-binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3de2deed5b90a1ef49923471bbaa9eb5e4db052
--- /dev/null
+++ b/pfam_gap_rates/Rod-binding.gap.json
@@ -0,0 +1 @@
+{"family": "Rod-binding", "n_seqs": 598, "length": 55, "gap_rates": [0.4414715719063545, 0.25585284280936454, 0.14715719063545152, 0.13712374581939799, 0.16220735785953178, 0.14715719063545152, 0.8913043478260869, 0.8595317725752508, 0.2157190635451505, 0.9297658862876255, 0.9264214046822743, 0.15551839464882944, 0.10869565217391304, 0.3745819397993311, 0.048494983277591976, 0.056856187290969896, 0.04013377926421405, 0.04180602006688963, 0.008361204013377926, 0.40301003344481606, 0.0033444816053511705, 0.0033444816053511705, 0.0033444816053511705, 0.03678929765886288, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0033444816053511705, 0.0, 0.0, 0.030100334448160536, 0.1956521739130435, 0.36622073578595316, 0.5652173913043478, 0.015050167224080268, 0.016722408026755852, 0.015050167224080268, 0.015050167224080268, 0.016722408026755852, 0.021739130434782608, 0.03177257525083612, 0.046822742474916385, 0.09197324414715718, 0.22240802675585283, 0.3979933110367893], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rpn3_C.gap.json b/pfam_gap_rates/Rpn3_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b03c1f16f7a09bd393b38b215429d2e046fb53c0
--- /dev/null
+++ b/pfam_gap_rates/Rpn3_C.gap.json
@@ -0,0 +1 @@
+{"family": "Rpn3_C", "n_seqs": 349, "length": 68, "gap_rates": [0.08595988538681948, 0.06303724928366762, 0.06017191977077364, 0.06017191977077364, 0.06017191977077364, 0.06017191977077364, 0.05730659025787966, 0.05730659025787966, 0.054441260744985676, 0.008595988538681949, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0028653295128939827, 0.0, 0.014326647564469915, 0.014326647564469915, 0.017191977077363897, 0.017191977077363897, 0.017191977077363897, 0.017191977077363897, 0.022922636103151862, 0.022922636103151862, 0.02865329512893983, 0.19484240687679083, 0.03151862464183381, 0.034383954154727794, 0.034383954154727794, 0.04011461318051576, 0.04011461318051576, 0.04297994269340974, 0.045845272206303724, 0.06017191977077364, 0.07449856733524356, 0.08595988538681948, 0.08595988538681948, 0.08882521489971347, 0.5845272206303725, 0.5501432664756447, 0.47277936962750716, 0.0830945558739255, 0.0830945558739255, 0.08882521489971347, 0.09455587392550144, 0.10315186246418338, 0.10315186246418338, 0.14613180515759314, 0.1174785100286533, 0.12034383954154727, 0.12893982808022922, 0.14326647564469913, 0.14613180515759314, 0.19197707736389685, 0.23209169054441262, 0.6103151862464183], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RtcB.gap.json b/pfam_gap_rates/RtcB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e414b8d355b9da08eb6303f21afc57b16389300
--- /dev/null
+++ b/pfam_gap_rates/RtcB.gap.json
@@ -0,0 +1 @@
+{"family": "RtcB", "n_seqs": 1337, "length": 469, "gap_rates": [0.4121166791323859, 0.3986537023186238, 0.38294689603590126, 0.37023186237845923, 0.36200448765893795, 0.3537771129394166, 0.3492894540014959, 0.34480179506357517, 0.3410620792819746, 0.3305908750934929, 0.32834704562453254, 0.337322363500374, 0.29768137621540763, 0.368735976065819, 0.24532535527299926, 0.2400897531787584, 0.2393418100224383, 0.23709798055347794, 0.23709798055347794, 0.23635003739715782, 0.2356020942408377, 0.2356020942408377, 0.2356020942408377, 0.2356020942408377, 0.23485415108451757, 0.2400897531787584, 0.24158563949139866, 0.23335826477187735, 0.23261032161555723, 0.2318623784592371, 0.23111443530291698, 0.23261032161555723, 0.23335826477187735, 0.23261032161555723, 0.23261032161555723, 0.23410620792819745, 0.668661181750187, 0.8302169035153328, 0.8885564697083022, 0.6731488406881077, 0.6544502617801047, 0.2356020942408377, 0.2356020942408377, 0.23111443530291698, 0.23111443530291698, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RuBisCO_large_N.gap.json b/pfam_gap_rates/RuBisCO_large_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac690411cc26eb85f9d63e16c58612bbf3908cea
--- /dev/null
+++ b/pfam_gap_rates/RuBisCO_large_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/S6PP.gap.json b/pfam_gap_rates/S6PP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2edd69067496d383cc7712da2318e246c8d5888f
--- /dev/null
+++ b/pfam_gap_rates/S6PP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SAM_PNT.gap.json b/pfam_gap_rates/SAM_PNT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2a178c9b16634d01300f6a2419893bfe671bb5d
--- /dev/null
+++ b/pfam_gap_rates/SAM_PNT.gap.json
@@ -0,0 +1 @@
+{"family": "SAM_PNT", "n_seqs": 457, "length": 86, "gap_rates": [0.6783369803063457, 0.5557986870897156, 0.5295404814004376, 0.4726477024070022, 0.43982494529540483, 0.41575492341356673, 0.3785557986870897, 0.33260393873085337, 0.3063457330415755, 0.25164113785557984, 0.21444201312910285, 0.1422319474835886, 0.12472647702407003, 0.07658643326039387, 0.9474835886214442, 0.0437636761487965, 0.03938730853391685, 0.028446389496717725, 0.028446389496717725, 0.0262582056892779, 0.024070021881838075, 0.02188183807439825, 0.0175054704595186, 0.0175054704595186, 0.0175054704595186, 0.0175054704595186, 0.01312910284463895, 0.01312910284463895, 0.01312910284463895, 0.01312910284463895, 0.02188183807439825, 0.019693654266958426, 0.01312910284463895, 0.01312910284463895, 0.015317286652078774, 0.8315098468271335, 0.8161925601750547, 0.01312910284463895, 0.01312910284463895, 0.015317286652078774, 0.028446389496717725, 0.03282275711159737, 0.05470459518599562, 0.045951859956236324, 0.037199124726477024, 0.04157549234135667, 0.037199124726477024, 0.05908096280087528, 0.7899343544857768, 0.037199124726477024, 0.0262582056892779, 0.0262582056892779, 0.0262582056892779, 0.0262582056892779, 0.024070021881838075, 0.024070021881838075, 0.024070021881838075, 0.0262582056892779, 0.0262582056892779, 0.0262582056892779, 0.0262582056892779, 0.0262582056892779, 0.0262582056892779, 0.0262582056892779, 0.028446389496717725, 0.028446389496717725, 0.030634573304157548, 0.030634573304157548, 0.03282275711159737, 0.5557986870897156, 0.10940919037199125, 0.05908096280087528, 0.05689277899343545, 0.05908096280087528, 0.06564551422319474, 0.06564551422319474, 0.0700218818380744, 0.07221006564551423, 0.08971553610503283, 0.0962800875273523, 0.1137855579868709, 0.14660831509846828, 0.16192560175054704, 0.18599562363238512, 0.26695842450765866, 0.4923413566739606], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SANT_DAMP1_like.gap.json b/pfam_gap_rates/SANT_DAMP1_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83402094348ab304abe168adb4dfe28417ffed97
--- /dev/null
+++ b/pfam_gap_rates/SANT_DAMP1_like.gap.json
@@ -0,0 +1 @@
+{"family": "SANT_DAMP1_like", "n_seqs": 301, "length": 102, "gap_rates": [0.32558139534883723, 0.13953488372093023, 0.10631229235880399, 0.09302325581395349, 0.08970099667774087, 0.08637873754152824, 0.08305647840531562, 0.08305647840531562, 0.08305647840531562, 0.07308970099667775, 0.0664451827242525, 0.06312292358803986, 0.05647840531561462, 0.05647840531561462, 0.05647840531561462, 0.05647840531561462, 0.05647840531561462, 0.05647840531561462, 0.05647840531561462, 0.05647840531561462, 0.06312292358803986, 0.07641196013289037, 0.06312292358803986, 0.053156146179401995, 0.03986710963455149, 0.023255813953488372, 0.9003322259136213, 0.8870431893687708, 0.016611295681063124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.009966777408637873, 0.009966777408637873, 0.013289036544850499, 0.009966777408637873, 0.013289036544850499, 0.013289036544850499, 0.013289036544850499, 0.009966777408637873, 0.009966777408637873, 0.019933554817275746, 0.3122923588039867, 0.3554817275747508, 0.7209302325581395, 0.7475083056478405, 0.770764119601329, 0.7906976744186046, 0.7973421926910299, 0.8039867109634552, 0.8106312292358804, 0.8438538205980066, 0.867109634551495, 0.9003322259136213, 0.8903654485049833, 0.8538205980066446, 0.813953488372093, 0.8073089700996677, 0.7973421926910299, 0.7940199335548173, 0.7840531561461794, 0.7574750830564784, 0.7242524916943521, 0.6810631229235881, 0.17275747508305647, 0.15282392026578073, 0.029900332225913623, 0.029900332225913623, 0.029900332225913623, 0.029900332225913623, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.036544850498338874, 0.036544850498338874, 0.04318936877076412, 0.04983388704318937, 0.04983388704318937, 0.04983388704318937, 0.04983388704318937, 0.04983388704318937, 0.05647840531561462, 0.08970099667774087, 0.10963455149501661, 0.717607973421927], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SASP.gap.json b/pfam_gap_rates/SASP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6465f67a2ce45fbdc53b55d9a4354e34038ebf4
--- /dev/null
+++ b/pfam_gap_rates/SASP.gap.json
@@ -0,0 +1 @@
+{"family": "SASP", "n_seqs": 1203, "length": 66, "gap_rates": [0.4147963424771405, 0.33832086450540316, 0.31504571903574397, 0.3092269326683292, 0.3034081463009144, 0.29343308395677475, 0.27597672485453034, 0.2651704073150457, 0.2502078137988362, 0.23857024106400665, 0.2310889443059019, 0.21778886118038238, 0.049044056525353284, 0.030756442227763924, 0.015793848711554447, 0.010806317539484621, 0.00914380714879468, 0.00914380714879468, 0.004987531172069825, 0.004987531172069825, 0.004987531172069825, 0.004987531172069825, 0.004987531172069825, 0.004987531172069825, 0.8661679135494597, 0.004987531172069825, 0.03408146300914381, 0.9019118869492935, 0.034912718204488775, 0.341645885286783, 0.07315045719035744, 0.26101413133832085, 0.257689110556941, 0.256857855361596, 0.23857024106400665, 0.23940149625935161, 0.019118869492934332, 0.020781379883624274, 0.020781379883624274, 0.022443890274314215, 0.021612635078969242, 0.021612635078969242, 0.021612635078969242, 0.020781379883624274, 0.12136325852036575, 0.13383208645054032, 0.9285120532003325, 0.9285120532003325, 0.9285120532003325, 0.9260182876142976, 0.13798836242726517, 0.13632585203657524, 0.034912718204488775, 0.029925187032418952, 0.04156275976724855, 0.04488778054862843, 0.05652535328345802, 0.12801330008312553, 0.14214463840399003, 0.14463840399002495, 0.1487946799667498, 0.1512884455527847, 0.15876974231088944, 0.16708229426433915, 0.2119700748129676, 0.3034081463009144], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAYSvFN.gap.json b/pfam_gap_rates/SAYSvFN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b20e7e2a5264017efa465167d4fb325311c5373e
--- /dev/null
+++ b/pfam_gap_rates/SAYSvFN.gap.json
@@ -0,0 +1 @@
+{"family": "SAYSvFN", "n_seqs": 141, "length": 76, "gap_rates": [0.8865248226950354, 0.3191489361702128, 0.20567375886524822, 0.1276595744680851, 0.12056737588652482, 0.0851063829787234, 0.07092198581560284, 0.07092198581560284, 0.06382978723404255, 0.05673758865248227, 0.05673758865248227, 0.05673758865248227, 0.0425531914893617, 0.0425531914893617, 0.03546099290780142, 0.0425531914893617, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.028368794326241134, 0.028368794326241134, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.014184397163120567, 0.9432624113475178, 0.014184397163120567, 0.014184397163120567, 0.48936170212765956, 0.48226950354609927, 0.8581560283687943, 0.04964539007092199, 0.02127659574468085, 0.9290780141843972, 0.9290780141843972, 0.9290780141843972, 0.9290780141843972, 0.02127659574468085, 0.0, 0.0, 0.0, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.04964539007092199, 0.0070921985815602835, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.02127659574468085, 0.02127659574468085, 0.03546099290780142, 0.05673758865248227, 0.04964539007092199, 0.05673758865248227, 0.05673758865248227, 0.05673758865248227, 0.07801418439716312, 0.09929078014184398, 0.11347517730496454, 0.15602836879432624, 0.24822695035460993], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SBDS_C.gap.json b/pfam_gap_rates/SBDS_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ec93702d34681267227cd10c8122dcf3b3871b0
--- /dev/null
+++ b/pfam_gap_rates/SBDS_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SBP.gap.json b/pfam_gap_rates/SBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccc55773f39b6020936943fe4e15650514c594d4
--- /dev/null
+++ b/pfam_gap_rates/SBP.gap.json
@@ -0,0 +1 @@
+{"family": "SBP", "n_seqs": 642, "length": 74, "gap_rates": [0.14797507788161993, 0.12149532710280374, 0.10747663551401869, 0.1059190031152648, 0.1043613707165109, 0.09813084112149532, 0.09657320872274143, 0.09657320872274143, 0.09657320872274143, 0.09501557632398754, 0.09190031152647975, 0.09034267912772585, 0.11059190031152648, 0.10903426791277258, 0.08722741433021806, 0.08722741433021806, 0.08255451713395638, 0.0794392523364486, 0.0794392523364486, 0.0763239875389408, 0.0763239875389408, 0.07320872274143302, 0.07320872274143302, 0.07165109034267912, 0.07009345794392523, 0.07009345794392523, 0.06853582554517133, 0.06697819314641744, 0.06697819314641744, 0.06853582554517133, 0.06853582554517133, 0.06542056074766354, 0.06386292834890965, 0.059190031152647975, 0.05763239875389408, 0.05763239875389408, 0.05763239875389408, 0.056074766355140186, 0.048286604361370715, 0.04672897196261682, 0.04672897196261682, 0.045171339563862926, 0.045171339563862926, 0.04205607476635514, 0.037383177570093455, 0.029595015576323987, 0.01557632398753894, 0.0264797507788162, 0.03115264797507788, 0.03271028037383177, 0.03894080996884735, 0.03894080996884735, 0.040498442367601244, 0.040498442367601244, 0.045171339563862926, 0.048286604361370715, 0.048286604361370715, 0.048286604361370715, 0.048286604361370715, 0.06074766355140187, 0.06230529595015576, 0.06230529595015576, 0.06386292834890965, 0.06386292834890965, 0.06697819314641744, 0.07009345794392523, 0.07009345794392523, 0.07165109034267912, 0.07165109034267912, 0.07165109034267912, 0.07320872274143302, 0.0763239875389408, 0.09034267912772585, 0.12149532710280374], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SDA1.gap.json b/pfam_gap_rates/SDA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bf09bba7f63a603438a6ab4295763c6ffeecbf2
--- /dev/null
+++ b/pfam_gap_rates/SDA1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SDH_sah.gap.json b/pfam_gap_rates/SDH_sah.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e3d69bb1c73d8c337fe125437ef792697a63f69
--- /dev/null
+++ b/pfam_gap_rates/SDH_sah.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SH2.gap.json b/pfam_gap_rates/SH2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8de897b2d2f1e85c805a8b7b59ab3ff107e0896
--- /dev/null
+++ b/pfam_gap_rates/SH2.gap.json
@@ -0,0 +1 @@
+{"family": "SH2", "n_seqs": 4696, "length": 98, "gap_rates": [0.18015332197614992, 0.10945485519591142, 0.08113287904599659, 0.07325383304940375, 0.060689948892674615, 0.05238500851788756, 0.046848381601362864, 0.04386712095400341, 0.05323679727427598, 0.03683986371379898, 0.03471039182282794, 0.033006814310051105, 0.029173764906303235, 0.028321976149914822, 0.025766609880749573, 0.024488926746166952, 0.024914821124361157, 0.9408006814310051, 0.7778960817717206, 0.5621805792163543, 0.14544293015332196, 0.13245315161839863, 0.011499148211243612, 0.011073253833049404, 0.011073253833049404, 0.010221465076660987, 0.010008517887563885, 0.009582623509369677, 0.011073253833049404, 0.009369676320272573, 0.010008517887563885, 0.009795570698466781, 0.13224020442930154, 0.9354770017035775, 0.07410562180579217, 0.029599659284497443, 0.027257240204429302, 0.014267461669505963, 0.9403747870528109, 0.9265332197614992, 0.013415672913117547, 0.014054514480408859, 0.013628620102214651, 0.01469335604770017, 0.014480408858603067, 0.016396933560477, 0.019378194207836458, 0.020442930153321975, 0.022572402044293016, 0.762350936967632, 0.8015332197614992, 0.9054514480408858, 0.934412265758092, 0.942504258943782, 0.9239778534923339, 0.8296422487223168, 0.7825809199318569, 0.7101788756388415, 0.04088586030664395, 0.03151618398637138, 0.03215502555366269, 0.032793867120954, 0.03492333901192504, 0.04045996592844974, 0.04514480408858603, 0.048551959114139696, 0.05792163543441227, 0.054514480408858604, 0.05728279386712096, 0.062180579216354344, 0.11477853492333902, 0.8345400340715503, 0.9080068143100511, 0.9250425894378195, 0.864778534923339, 0.7721465076660988, 0.5002129471890971, 0.1635434412265758, 0.11179727427597956, 0.10540885860306644, 0.11179727427597956, 0.11733390119250425, 0.15289608177172062, 0.11797274275979557, 0.12031516183986371, 0.932495741056218, 0.8609454855195912, 0.12308347529812606, 0.125, 0.12925894378194208, 0.1303236797274276, 0.1316013628620102, 0.13266609880749575, 0.1354344122657581, 0.13905451448040887, 0.15609028960817717, 0.19697614991482112, 0.23083475298126066], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SHS2_FTSA.gap.json b/pfam_gap_rates/SHS2_FTSA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c400b11f6f68da6f7fa28bb3c187a0f1a24b2a68
--- /dev/null
+++ b/pfam_gap_rates/SHS2_FTSA.gap.json
@@ -0,0 +1 @@
+{"family": "SHS2_FTSA", "n_seqs": 1500, "length": 81, "gap_rates": [0.30133333333333334, 0.2753333333333333, 0.202, 0.142, 0.09466666666666666, 0.07733333333333334, 0.066, 0.06, 0.04533333333333334, 0.03266666666666666, 0.027333333333333334, 0.022, 0.019333333333333334, 0.018, 0.013333333333333334, 0.010666666666666666, 0.009333333333333334, 0.011333333333333334, 0.446, 0.5073333333333333, 0.008, 0.006, 0.006, 0.006, 0.006, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.006, 0.946, 0.011333333333333334, 0.008666666666666666, 0.008, 0.005333333333333333, 0.032, 0.0033333333333333335, 0.0026666666666666666, 0.0026666666666666666, 0.002, 0.002, 0.002, 0.0013333333333333333, 0.0013333333333333333, 0.0013333333333333333, 0.0013333333333333333, 0.0006666666666666666, 0.0006666666666666666, 0.0006666666666666666, 0.0006666666666666666, 0.0013333333333333333, 0.0013333333333333333, 0.002, 0.0026666666666666666, 0.0026666666666666666, 0.044, 0.023333333333333334, 0.004, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0033333333333333335, 0.0033333333333333335, 0.0033333333333333335, 0.0033333333333333335, 0.0033333333333333335, 0.005333333333333333, 0.008, 0.013333333333333334, 0.020666666666666667, 0.03933333333333333, 0.07266666666666667, 0.418], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SIMPL.gap.json b/pfam_gap_rates/SIMPL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a2b0a8d5ce599a3a51cc0431db9c0617ce8c0d3
--- /dev/null
+++ b/pfam_gap_rates/SIMPL.gap.json
@@ -0,0 +1 @@
+{"family": "SIMPL", "n_seqs": 1557, "length": 248, "gap_rates": [0.3346178548490687, 0.1817597944765575, 0.1123956326268465, 0.08477842003853564, 0.06936416184971098, 0.06229929351316635, 0.06037251123956326, 0.054592164418754016, 0.05330764290301863, 0.05009633911368015, 0.048811817597944764, 0.04816955684007707, 0.04816955684007707, 0.047527296082209375, 0.0449582530507386, 0.04303147077713552, 0.04110468850353243, 0.04046242774566474, 0.03789338471419396, 0.03596660244059088, 0.035324341682723186, 0.03468208092485549, 0.03468208092485549, 0.03468208092485549, 0.04303147077713552, 0.03596660244059088, 0.0340398201669878, 0.033397559409120106, 0.035324341682723186, 0.033397559409120106, 0.03211303789338472, 0.03147077713551702, 0.030828516377649325, 0.03789338471419396, 0.033397559409120106, 0.026332691072575465, 0.02569043031470777, 0.02569043031470777, 0.02569043031470777, 0.026332691072575465, 0.025048169556840076, 0.024405908798972382, 0.024405908798972382, 0.024405908798972382, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SIN1_PH.gap.json b/pfam_gap_rates/SIN1_PH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91271f255eab6dd61a8ebb7b3a35066601f5c0f8
--- /dev/null
+++ b/pfam_gap_rates/SIN1_PH.gap.json
@@ -0,0 +1 @@
+{"family": "SIN1_PH", "n_seqs": 191, "length": 137, "gap_rates": [0.8219895287958116, 0.2670157068062827, 0.1518324607329843, 0.09424083769633508, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.08376963350785341, 0.07853403141361257, 0.07853403141361257, 0.08900523560209424, 0.08376963350785341, 0.643979057591623, 0.45549738219895286, 0.07329842931937172, 0.07853403141361257, 0.06806282722513089, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.05759162303664921, 0.04712041884816754, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.04712041884816754, 0.04712041884816754, 0.05235602094240838, 0.07329842931937172, 0.06806282722513089, 0.16230366492146597, 0.19895287958115182, 0.34554973821989526, 0.39790575916230364, 0.900523560209424, 0.9319371727748691, 0.9424083769633508, 0.9214659685863874, 0.8691099476439791, 0.47643979057591623, 0.5392670157068062, 0.35602094240837695, 0.2670157068062827, 0.17277486910994763, 0.09424083769633508, 0.42408376963350786, 0.9267015706806283, 0.041884816753926704, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.03664921465968586, 0.03664921465968586, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.03664921465968586, 0.031413612565445025, 0.031413612565445025, 0.8324607329842932, 0.7329842931937173, 0.7225130890052356, 0.08900523560209424, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.02617801047120419, 0.8115183246073299, 0.8743455497382199, 0.8743455497382199, 0.8848167539267016, 0.9057591623036649, 0.9162303664921466, 0.9162303664921466, 0.9267015706806283, 0.93717277486911, 0.93717277486911, 0.9267015706806283, 0.9162303664921466, 0.9162303664921466, 0.8900523560209425, 0.8743455497382199, 0.8743455497382199, 0.8638743455497382, 0.774869109947644, 0.6858638743455497, 0.06282722513089005, 0.041884816753926704, 0.041884816753926704, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.2617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.031413612565445025, 0.03664921465968586, 0.03664921465968586, 0.041884816753926704, 0.04712041884816754, 0.04712041884816754, 0.05235602094240838, 0.06806282722513089, 0.10471204188481675, 0.28272251308900526, 0.5340314136125655, 0.93717277486911], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPT6_acidic.gap.json b/pfam_gap_rates/SPT6_acidic.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba664d0585e88694ee0f9ad81ad78026c49ee4e9
--- /dev/null
+++ b/pfam_gap_rates/SPT6_acidic.gap.json
@@ -0,0 +1 @@
+{"family": "SPT6_acidic", "n_seqs": 269, "length": 110, "gap_rates": [0.34944237918215615, 0.13011152416356878, 0.11524163568773234, 0.10408921933085502, 0.10037174721189591, 0.7769516728624535, 0.6431226765799256, 0.08921933085501858, 0.07806691449814127, 0.9479553903345725, 0.9442379182156134, 0.06691449814126393, 0.06691449814126393, 0.06319702602230483, 0.06319702602230483, 0.05947955390334572, 0.05947955390334572, 0.055762081784386616, 0.05204460966542751, 0.07063197026022305, 0.04460966542750929, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.040892193308550186, 0.9107806691449815, 0.026022304832713755, 0.022304832713754646, 0.05204460966542751, 0.02973977695167286, 0.022304832713754646, 0.03717472118959108, 0.06691449814126393, 0.06319702602230483, 0.20074349442379183, 0.32342007434944237, 0.8401486988847584, 0.4349442379182156, 0.8141263940520446, 0.9144981412639405, 0.9442379182156134, 0.929368029739777, 0.862453531598513, 0.7843866171003717, 0.43866171003717475, 0.25650557620817843, 0.11524163568773234, 0.05947955390334572, 0.04460966542750929, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.01486988847583643, 0.01858736059479554, 0.08178438661710037, 0.06691449814126393, 0.07063197026022305, 0.10780669144981413, 0.25650557620817843, 0.8513011152416357, 0.9144981412639405, 0.9256505576208178, 0.8773234200743495, 0.7732342007434945, 0.11895910780669144, 0.03717472118959108, 0.0037174721189591076, 0.929368029739777, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.007434944237918215, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.011152416356877323, 0.01858736059479554, 0.02973977695167286, 0.13011152416356878, 0.35315985130111527, 0.7620817843866171, 0.9182156133828996, 0.6282527881040892, 0.3903345724907063, 0.09293680297397769, 0.08550185873605948, 0.08550185873605948, 0.08921933085501858, 0.10780669144981413, 0.12267657992565056, 0.1449814126394052, 0.1524163568773234, 0.18587360594795538, 0.31226765799256506, 0.5947955390334573], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRI.gap.json b/pfam_gap_rates/SRI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06b9b744f99c1b307d601eb0d5b47bc39628f91d
--- /dev/null
+++ b/pfam_gap_rates/SRI.gap.json
@@ -0,0 +1 @@
+{"family": "SRI", "n_seqs": 217, "length": 101, "gap_rates": [0.8847926267281107, 0.41013824884792627, 0.29493087557603687, 0.2073732718894009, 0.15207373271889402, 0.0967741935483871, 0.06451612903225806, 0.04608294930875576, 0.03686635944700461, 0.03686635944700461, 0.03225806451612903, 0.027649769585253458, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.02304147465437788, 0.02304147465437788, 0.9308755760368663, 0.6221198156682027, 0.018433179723502304, 0.018433179723502304, 0.6589861751152074, 0.695852534562212, 0.7142857142857143, 0.7096774193548387, 0.663594470046083, 0.6267281105990783, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.004608294930875576, 0.0, 0.0, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.009216589861751152, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.055299539170506916, 0.02304147465437788, 0.013824884792626729, 0.07373271889400922, 0.08294930875576037, 0.9308755760368663, 0.9493087557603687, 0.9400921658986175, 0.9032258064516129, 0.1152073732718894, 0.31797235023041476, 0.8755760368663594, 0.7788018433179723, 0.24423963133640553, 0.2304147465437788, 0.06451612903225806, 0.08294930875576037, 0.22119815668202766, 0.013824884792626729, 0.8433179723502304, 0.8433179723502304, 0.013824884792626729, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.03225806451612903, 0.04608294930875576, 0.05069124423963134, 0.055299539170506916, 0.07373271889400922, 0.07834101382488479, 0.1152073732718894, 0.15668202764976957, 0.1889400921658986, 0.29493087557603687, 0.815668202764977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRP68.gap.json b/pfam_gap_rates/SRP68.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2611fd05e2d5cf67b90bb82f4af736dc84c6a3f2
--- /dev/null
+++ b/pfam_gap_rates/SRP68.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SSrecog.gap.json b/pfam_gap_rates/SSrecog.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e667c240b00160253f5381eb5d422135522754f
--- /dev/null
+++ b/pfam_gap_rates/SSrecog.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/STAT_int.gap.json b/pfam_gap_rates/STAT_int.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6e802d7da8dd5854381d2297bc202861ae9b4ac
--- /dev/null
+++ b/pfam_gap_rates/STAT_int.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/STT3.gap.json b/pfam_gap_rates/STT3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4655d980428d9913488f64252868e06190a6567b
--- /dev/null
+++ b/pfam_gap_rates/STT3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SWIB.gap.json b/pfam_gap_rates/SWIB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ebdce5fff8d9aa2ae0d0ab36b7b97c7d0eb29ab
--- /dev/null
+++ b/pfam_gap_rates/SWIB.gap.json
@@ -0,0 +1 @@
+{"family": "SWIB", "n_seqs": 1323, "length": 80, "gap_rates": [0.7241118669690099, 0.3960695389266818, 0.24792139077853365, 0.1912320483749055, 0.17006802721088435, 0.1126228269085412, 0.10204081632653061, 0.09297052154195011, 0.08314436885865457, 0.08238851095993953, 0.07709750566893424, 0.07634164777021919, 0.07331821617535904, 0.06878306878306878, 0.8337112622826909, 0.8926681783824642, 0.9198790627362056, 0.8934240362811792, 0.8888888888888888, 0.817838246409675, 0.05744520030234316, 0.049886621315192746, 0.047619047619047616, 0.037037037037037035, 0.031746031746031744, 0.02872260015117158, 0.026455026455026454, 0.02418745275888133, 0.021919879062736205, 0.021164021164021163, 0.021164021164021163, 0.018140589569160998, 0.01436130007558579, 0.01436130007558579, 0.01436130007558579, 0.01436130007558579, 0.01436130007558579, 0.013605442176870748, 0.012849584278155708, 0.012849584278155708, 0.012093726379440665, 0.011337868480725623, 0.012093726379440665, 0.01436130007558579, 0.016628873771730914, 0.027210884353741496, 0.025699168556311415, 0.027966742252456538, 0.02418745275888133, 0.034013605442176874, 0.02343159486016629, 0.02418745275888133, 0.024943310657596373, 0.024943310657596373, 0.025699168556311415, 0.026455026455026454, 0.026455026455026454, 0.026455026455026454, 0.02947845804988662, 0.031746031746031744, 0.036281179138321996, 0.045351473922902494, 0.10582010582010581, 0.5570672713529856, 0.23733938019652306, 0.06198034769463341, 0.06424792139077853, 0.07180650037792895, 0.08238851095993953, 0.09070294784580499, 0.09297052154195011, 0.09977324263038549, 0.10128495842781557, 0.10430839002267574, 0.1073318216175359, 0.11186696900982615, 0.12320483749055178, 0.16326530612244897, 0.22978080120937264, 0.32653061224489793], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SYS1.gap.json b/pfam_gap_rates/SYS1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..279923910652637d43977e77867d59710d9b3814
--- /dev/null
+++ b/pfam_gap_rates/SYS1.gap.json
@@ -0,0 +1 @@
+{"family": "SYS1", "n_seqs": 323, "length": 154, "gap_rates": [0.7616099071207431, 0.631578947368421, 0.39628482972136225, 0.34674922600619196, 0.30340557275541796, 0.2848297213622291, 0.2693498452012384, 0.2693498452012384, 0.2631578947368421, 0.25386996904024767, 0.2476780185758514, 0.24458204334365324, 0.23529411764705882, 0.23219814241486067, 0.22910216718266255, 0.22910216718266255, 0.22910216718266255, 0.22291021671826625, 0.22291021671826625, 0.21981424148606812, 0.21981424148606812, 0.21981424148606812, 0.21981424148606812, 0.21981424148606812, 0.21981424148606812, 0.21981424148606812, 0.21981424148606812, 0.21671826625386997, 0.21671826625386997, 0.21671826625386997, 0.9442724458204335, 0.26006191950464397, 0.2260061919504644, 0.22910216718266255, 0.21671826625386997, 0.21671826625386997, 0.21362229102167182, 0.21362229102167182, 0.21362229102167182, 0.21052631578947367, 0.21052631578947367, 0.21362229102167182, 0.21671826625386997, 0.9411764705882353, 0.9442724458204335, 0.9442724458204335, 0.9473684210526315, 0.9473684210526315, 0.9442724458204335, 0.9411764705882353, 0.9380804953560371, 0.21052631578947367, 0.21052631578947367, 0.21671826625386997, 0.21362229102167182, 0.20743034055727555, 0.20743034055727555, 0.20123839009287925, 0.19195046439628483, 0.23529411764705882, 0.21981424148606812, 0.2043343653250774, 0.18885448916408668, 0.17027863777089783, 0.1609907120743034, 0.14551083591331268, 0.1393188854489164, 0.13003095975232198, 0.13622291021671826, 0.12074303405572756, 0.11764705882352941, 0.10526315789473684, 0.10835913312693499, 0.1021671826625387, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.9102167182662538, 0.09597523219814241, 0.09597523219814241, 0.09597523219814241, 0.09907120743034056, 0.1021671826625387, 0.09597523219814241, 0.09597523219814241, 0.08978328173374613, 0.08978328173374613, 0.08978328173374613, 0.08978328173374613, 0.08978328173374613, 0.09907120743034056, 0.11455108359133127, 0.11145510835913312, 0.1021671826625387, 0.1021671826625387, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.09287925696594428, 0.30340557275541796, 0.10835913312693499, 0.1021671826625387, 0.1021671826625387, 0.1021671826625387, 0.12074303405572756, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.1021671826625387, 0.1021671826625387, 0.1021671826625387, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.10835913312693499, 0.11145510835913312, 0.11145510835913312, 0.11145510835913312, 0.12074303405572756, 0.13003095975232198, 0.1393188854489164, 0.14241486068111456, 0.14241486068111456, 0.14241486068111456, 0.14551083591331268, 0.15170278637770898, 0.1826625386996904, 0.2724458204334365, 0.28792569659442724, 0.42105263157894735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sacchrp_dh_C.gap.json b/pfam_gap_rates/Sacchrp_dh_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..247c8e1bb5e61efcc03bc043260b17b824875f42
--- /dev/null
+++ b/pfam_gap_rates/Sacchrp_dh_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sacchrp_dh_NADP.gap.json b/pfam_gap_rates/Sacchrp_dh_NADP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..464652895b10b1b0bbf3d7ed32bd2c0b668ac288
--- /dev/null
+++ b/pfam_gap_rates/Sacchrp_dh_NADP.gap.json
@@ -0,0 +1 @@
+{"family": "Sacchrp_dh_NADP", "n_seqs": 2144, "length": 161, "gap_rates": [0.28031716417910446, 0.07509328358208955, 0.05550373134328358, 0.05503731343283582, 0.05223880597014925, 0.05223880597014925, 0.5914179104477612, 0.051305970149253734, 0.051305970149253734, 0.049906716417910446, 0.048507462686567165, 0.048507462686567165, 0.0457089552238806, 0.042444029850746266, 0.04151119402985075, 0.04151119402985075, 0.04011194029850746, 0.03917910447761194, 0.03871268656716418, 0.03544776119402985, 0.03684701492537314, 0.041044776119402986, 0.08955223880597014, 0.06996268656716417, 0.40345149253731344, 0.43236940298507465, 0.9104477611940298, 0.9407649253731343, 0.7621268656716418, 0.06343283582089553, 0.03731343283582089, 0.028917910447761194, 0.026119402985074626, 0.025652985074626867, 0.02378731343283582, 0.0228544776119403, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.02332089552238806, 0.0853544776119403, 0.07042910447761194, 0.03684701492537314, 0.03404850746268657, 0.06529850746268656, 0.1478544776119403, 0.30970149253731344, 0.365205223880597, 0.6263992537313433, 0.7933768656716418, 0.8722014925373134, 0.9053171641791045, 0.8292910447761194, 0.6930970149253731, 0.5774253731343284, 0.07602611940298508, 0.0480410447761194, 0.03404850746268657, 0.027985074626865673, 0.024253731343283583, 0.020522388059701493, 0.018656716417910446, 0.01585820895522388, 0.012593283582089552, 0.011194029850746268, 0.013526119402985074, 0.013526119402985074, 0.015391791044776119, 0.014458955223880597, 0.01632462686567164, 0.013992537313432836, 0.020988805970149255, 0.851679104477612, 0.02751865671641791, 0.02005597014925373, 0.013059701492537313, 0.01166044776119403, 0.012126865671641791, 0.009328358208955223, 0.0065298507462686565, 0.005597014925373134, 0.7490671641791045, 0.7276119402985075, 0.005130597014925373, 0.0046641791044776115, 0.004197761194029851, 0.004197761194029851, 0.006063432835820896, 0.005130597014925373, 0.007462686567164179, 0.01166044776119403, 0.010261194029850746, 0.009328358208955223, 0.6030783582089553, 0.59375, 0.01166044776119403, 0.013059701492537313, 0.01166044776119403, 0.010727611940298507, 0.010727611940298507, 0.01166044776119403, 0.012126865671641791, 0.01166044776119403, 0.01166044776119403, 0.012126865671641791, 0.012126865671641791, 0.012126865671641791, 0.012593283582089552, 0.012126865671641791, 0.013526119402985074, 0.013992537313432836, 0.013992537313432836, 0.01585820895522388, 0.8736007462686567, 0.9137126865671642, 0.9029850746268657, 0.7961753731343284, 0.016791044776119403, 0.14972014925373134, 0.14085820895522388, 0.8614738805970149, 0.8638059701492538, 0.9020522388059702, 0.9020522388059702, 0.9253731343283582, 0.9328358208955224, 0.9263059701492538, 0.9244402985074627, 0.9020522388059702, 0.9015858208955224, 0.863339552238806, 0.8596082089552238, 0.7206156716417911, 0.7210820895522388, 0.7140858208955224, 0.7089552238805971, 0.7038246268656716, 0.490205223880597, 0.41044776119402987, 0.376865671641791, 0.3582089552238806, 0.1333955223880597, 0.11940298507462686, 0.11847014925373134, 0.12313432835820895, 0.125, 0.1296641791044776, 0.13199626865671643, 0.13526119402985073, 0.13852611940298507, 0.1455223880597015, 0.15298507462686567, 0.15578358208955223, 0.1669776119402985, 0.2196828358208955, 0.18796641791044777, 0.19496268656716417, 0.21548507462686567, 0.2579291044776119, 0.3138992537313433, 0.45988805970149255], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SapA.gap.json b/pfam_gap_rates/SapA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4177e4add42dadc63530e4246375c768bd8776c
--- /dev/null
+++ b/pfam_gap_rates/SapA.gap.json
@@ -0,0 +1 @@
+{"family": "SapA", "n_seqs": 185, "length": 33, "gap_rates": [0.9243243243243243, 0.2648648648648649, 0.07567567567567568, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005405405405405406, 0.016216216216216217, 0.021621621621621623, 0.02702702702702703, 0.032432432432432434, 0.032432432432432434, 0.043243243243243246, 0.08108108108108109, 0.17297297297297298, 0.21621621621621623, 0.20540540540540542, 0.4918918918918919], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SapB_2.gap.json b/pfam_gap_rates/SapB_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52acc9075db737137f8e545eb82b024f7d000854
--- /dev/null
+++ b/pfam_gap_rates/SapB_2.gap.json
@@ -0,0 +1 @@
+{"family": "SapB_2", "n_seqs": 889, "length": 35, "gap_rates": [0.6175478065241845, 0.172103487064117, 0.019122609673790775, 0.019122609673790775, 0.019122609673790775, 0.01799775028121485, 0.015748031496062992, 0.013498312710911136, 0.01124859392575928, 0.013498312710911136, 0.00562429696287964, 0.0011248593925759281, 0.0011248593925759281, 0.0022497187851518562, 0.0011248593925759281, 0.0011248593925759281, 0.0011248593925759281, 0.0, 0.0, 0.0, 0.013498312710911136, 0.08323959505061868, 0.0011248593925759281, 0.9426321709786277, 0.003374578177727784, 0.0044994375703037125, 0.006749156355455568, 0.007874015748031496, 0.007874015748031496, 0.01124859392575928, 0.01687289088863892, 0.020247469066366704, 0.02924634420697413, 0.04499437570303712, 0.04611923509561305], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sas10_Utp3.gap.json b/pfam_gap_rates/Sas10_Utp3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..466f5b150aa698147f03efcea6b871ef087eb02b
--- /dev/null
+++ b/pfam_gap_rates/Sas10_Utp3.gap.json
@@ -0,0 +1 @@
+{"family": "Sas10_Utp3", "n_seqs": 664, "length": 120, "gap_rates": [0.5256024096385542, 0.29066265060240964, 0.18072289156626506, 0.12951807228915663, 0.11144578313253012, 0.08734939759036145, 0.08132530120481928, 0.06475903614457831, 0.05271084337349398, 0.04969879518072289, 0.045180722891566265, 0.045180722891566265, 0.04216867469879518, 0.0391566265060241, 0.03162650602409638, 0.02710843373493976, 0.0286144578313253, 0.03614457831325301, 0.03765060240963856, 0.03765060240963856, 0.08132530120481928, 0.9457831325301205, 0.12349397590361445, 0.16114457831325302, 0.1822289156626506, 0.1927710843373494, 0.22289156626506024, 0.5015060240963856, 0.7108433734939759, 0.6234939759036144, 0.3674698795180723, 0.28313253012048195, 0.927710843373494, 0.45331325301204817, 0.5617469879518072, 0.7243975903614458, 0.8478915662650602, 0.9006024096385542, 0.9367469879518072, 0.9216867469879518, 0.875, 0.7906626506024096, 0.6551204819277109, 0.4939759036144578, 0.03765060240963856, 0.2575301204819277, 0.16716867469879518, 0.004518072289156626, 0.0015060240963855422, 0.0015060240963855422, 0.0015060240963855422, 0.0015060240963855422, 0.0015060240963855422, 0.0015060240963855422, 0.0015060240963855422, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.060240963855421686, 0.060240963855421686, 0.0015060240963855422, 0.009036144578313253, 0.9457831325301205, 0.012048192771084338, 0.010542168674698794, 0.0015060240963855422, 0.7454819277108434, 0.766566265060241, 0.8072289156626506, 0.8599397590361446, 0.891566265060241, 0.9096385542168675, 0.9352409638554217, 0.9186746987951807, 0.8990963855421686, 0.875, 0.8403614457831325, 0.7771084337349398, 0.7575301204819277, 0.7108433734939759, 0.009036144578313253, 0.10542168674698796, 0.10240963855421686, 0.09789156626506024, 0.09186746987951808, 0.09186746987951808, 0.0030120481927710845, 0.8478915662650602, 0.8614457831325302, 0.891566265060241, 0.911144578313253, 0.9367469879518072, 0.9427710843373494, 0.9216867469879518, 0.9021084337349398, 0.8689759036144579, 0.8478915662650602, 0.8448795180722891, 0.0030120481927710845, 0.004518072289156626, 0.007530120481927711, 0.007530120481927711, 0.007530120481927711, 0.012048192771084338, 0.012048192771084338, 0.015060240963855422, 0.018072289156626505, 0.018072289156626505, 0.024096385542168676, 0.03463855421686747, 0.10692771084337349, 0.17319277108433734], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Se-cys_synth_N.gap.json b/pfam_gap_rates/Se-cys_synth_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f07610d261465fc47ca951f86896704e0db06ae1
--- /dev/null
+++ b/pfam_gap_rates/Se-cys_synth_N.gap.json
@@ -0,0 +1 @@
+{"family": "Se-cys_synth_N", "n_seqs": 282, "length": 40, "gap_rates": [0.1524822695035461, 0.08156028368794327, 0.031914893617021274, 0.014184397163120567, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01773049645390071, 0.024822695035460994, 0.0, 0.0070921985815602835, 0.0035460992907801418, 0.0, 0.0, 0.014184397163120567, 0.010638297872340425, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0070921985815602835, 0.010638297872340425, 0.014184397163120567, 0.031914893617021274, 0.0425531914893617, 0.05319148936170213], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Secretin.gap.json b/pfam_gap_rates/Secretin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d7d7b61a3be1cf608c3fb05edf98bc3ac967070
--- /dev/null
+++ b/pfam_gap_rates/Secretin.gap.json
@@ -0,0 +1 @@
+{"family": "Secretin", "n_seqs": 2003, "length": 184, "gap_rates": [0.4268597104343485, 0.20569146280579131, 0.13879181228157764, 0.08637044433349975, 0.05741387918122816, 0.046929605591612585, 0.03944083874188717, 0.03594608087868198, 0.034947578632051925, 0.03394907638542187, 0.03344982526210684, 0.032451323015476784, 0.030454318522216674, 0.02895656515227159, 0.02496255616575137, 0.023464802795806292, 0.023464802795806292, 0.022466300549176237, 0.021467798302546182, 0.020968547179231155, 0.020968547179231155, 0.020968547179231155, 0.021467798302546182, 0.021467798302546182, 0.021467798302546182, 0.021467798302546182, 0.021467798302546182, 0.020968547179231155, 0.0199700449326011, 0.0199700449326011, 0.0199700449326011, 0.0199700449326011, 0.019470793809286072, 0.019470793809286072, 0.018971542685971045, 0.3434847728407389, 0.30304543185222166, 0.2895656515227159, 0.27908137793310034, 0.038442336495257114, 0.038941587618572145, 0.18172740888667, 0.19221168247628556, 0.25711432850723914, 0.33150274588117823, 0.3939091362955567, 0.37144283574638043, 0.3979031452820769, 0.39840239640539193, 0.24862705941088367, 0.24613080379430854, 0.8077883175237144, 0.8861707438841737, 0.945082376435347, 0.9226160758861708, 0.8452321517723415, 0.781827259111333, 0.1567648527209186, 0.021467798302546182, 0.017473789316025962, 0.017473789316025962, 0.016475287069395907, 0.016475287069395907, 0.016475287069395907, 0.016475287069395907, 0.016475287069395907, 0.016475287069395907, 0.016475287069395907, 0.016974538192710935, 0.01597603594608088, 0.01547678482276585, 0.014977533699450823, 0.014977533699450823, 0.01597603594608088, 0.01597603594608088, 0.04792810783824263, 0.9161258112830754, 0.01797304043934099, 0.017473789316025962, 0.016475287069395907, 0.013979031452820768, 0.013979031452820768, 0.013979031452820768, 0.014478282576135796, 0.014478282576135796, 0.014478282576135796, 0.014478282576135796, 0.014478282576135796, 0.013979031452820768, 0.013979031452820768, 0.014478282576135796, 0.014977533699450823, 0.014977533699450823, 0.017473789316025962, 0.040938592111832255, 0.12481278082875687, 0.254618072890664, 0.3729405891163255, 0.6025961058412381, 0.5292061907139292, 0.7838242636045931, 0.8582126809785322, 0.9126310534198702, 0.9326010983524713, 0.8861707438841737, 0.8262606090863704, 0.7598602096854717, 0.4313529705441837, 0.25911133300049927, 0.04992511233150274, 0.02945581627558662, 0.020968547179231155, 0.018472291562656017, 0.01547678482276585, 0.013979031452820768, 0.01347978032950574, 0.01347978032950574, 0.012980529206190713, 0.012980529206190713, 0.012980529206190713, 0.012980529206190713, 0.01347978032950574, 0.01347978032950574, 0.01347978032950574, 0.012481278082875686, 0.012481278082875686, 0.011482775836245632, 0.011482775836245632, 0.011482775836245632, 0.010484273589615577, 0.010484273589615577, 0.010484273589615577, 0.010484273589615577, 0.009485771342985522, 0.012481278082875686, 0.014977533699450823, 0.01547678482276585, 0.01597603594608088, 0.01597603594608088, 0.016974538192710935, 0.019470793809286072, 0.019470793809286072, 0.022466300549176237, 0.022466300549176237, 0.02695956065901148, 0.03195207189216176, 0.034947578632051925, 0.03594608087868198, 0.04143784323514728, 0.046929605591612585, 0.048427358961557664, 0.05292061907139291, 0.0509236145781328, 0.052421367948077884, 0.05591612581128307, 0.05192211682476285, 0.050424363454817774, 0.050424363454817774, 0.04992511233150274, 0.04892661008487269, 0.046929605591612585, 0.04593110334498253, 0.044932601098352475, 0.044932601098352475, 0.044932601098352475, 0.0454318522216675, 0.046430354468297554, 0.0454318522216675, 0.0454318522216675, 0.0454318522216675, 0.04593110334498253, 0.046929605591612585, 0.04742885671492761, 0.04742885671492761, 0.04792810783824263, 0.048427358961557664, 0.048427358961557664, 0.04942586120818772, 0.05142286570144783, 0.05541687468796805, 0.06240639041437843, 0.07888167748377434, 0.13130304543185223, 0.5901148277583624], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SelR.gap.json b/pfam_gap_rates/SelR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3caa45acf6040e7fa7aa57fde114a2c2c8cb4e0
--- /dev/null
+++ b/pfam_gap_rates/SelR.gap.json
@@ -0,0 +1 @@
+{"family": "SelR", "n_seqs": 2429, "length": 122, "gap_rates": [0.38740222313709344, 0.23301770275833678, 0.20461095100864554, 0.09715932482503088, 0.06875257307533965, 0.058460271716755864, 0.0531082750102923, 0.04693289419514203, 0.04487443392342528, 0.04240428159736517, 0.04199258954302182, 0.04116920543433512, 0.04075751337999177, 0.03869905310827501, 0.03869905310827501, 0.037463976945244955, 0.03664059283655825, 0.03581720872787155, 0.03581720872787155, 0.03499382461918485, 0.03581720872787155, 0.03417044051049815, 0.03211198023878139, 0.03087690407575134, 0.027583367641004528, 0.023054755043227664, 0.02881844380403458, 0.02428983120625772, 0.02428983120625772, 0.02181967888019761, 0.022231370934540962, 0.019349526554137506, 0.0177027583367641, 0.016467682173734045, 0.015644298065047343, 0.01440922190201729, 0.01440922190201729, 0.013174145738987238, 0.013174145738987238, 0.012762453684643887, 0.012762453684643887, 0.012350761630300536, 0.011939069575957185, 0.012350761630300536, 0.011939069575957185, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011939069575957185, 0.012350761630300536, 0.013174145738987238, 0.013174145738987238, 0.01399752984767394, 0.013585837793330589, 0.013174145738987238, 0.013585837793330589, 0.014820913956360642, 0.015232606010703994, 0.014820913956360642, 0.015232606010703994, 0.01440922190201729, 0.01440922190201729, 0.01440922190201729, 0.01440922190201729, 0.01440922190201729, 0.014820913956360642, 0.01399752984767394, 0.3507616303005352, 0.0337587484561548, 0.015644298065047343, 0.014820913956360642, 0.015644298065047343, 0.015644298065047343, 0.016055990119390694, 0.016055990119390694, 0.018937834499794155, 0.02099629477151091, 0.1222725401399753, 0.11362700699876492, 0.025113215314944422, 0.0177027583367641, 0.016467682173734045, 0.016467682173734045, 0.016467682173734045, 0.016055990119390694, 0.0168793742280774, 0.018114450391107453, 0.01729106628242075, 0.0177027583367641, 0.018937834499794155, 0.018526142445450804, 0.018937834499794155, 0.018937834499794155, 0.018526142445450804, 0.018937834499794155, 0.019761218608480857, 0.019761218608480857, 0.020172910662824207, 0.02058460271716756, 0.8069164265129684, 0.020172910662824207, 0.020172910662824207, 0.02181967888019761, 0.02470152326060107, 0.027583367641004528, 0.055166735282009056, 0.546315356113627, 0.03211198023878139, 0.029641827912721283, 0.030053519967064634, 0.02881844380403458, 0.03417044051049815, 0.03417044051049815, 0.03417044051049815, 0.03581720872787155, 0.036228900782214905, 0.036228900782214905, 0.03664059283655825, 0.04116920543433512, 0.05763688760806916, 0.09386578839028406, 0.44298065047344587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sel_put.gap.json b/pfam_gap_rates/Sel_put.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc2d451d60b6ee5ed3d751487497b278e3f21317
--- /dev/null
+++ b/pfam_gap_rates/Sel_put.gap.json
@@ -0,0 +1 @@
+{"family": "Sel_put", "n_seqs": 237, "length": 65, "gap_rates": [0.8860759493670886, 0.4008438818565401, 0.2742616033755274, 0.17721518987341772, 0.08860759493670886, 0.05907172995780591, 0.03375527426160337, 0.029535864978902954, 0.029535864978902954, 0.029535864978902954, 0.02531645569620253, 0.02109704641350211, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.004219409282700422, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.029535864978902954, 0.9409282700421941, 0.029535864978902954, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.046413502109704644, 0.810126582278481, 0.08016877637130802, 0.05907172995780591, 0.046413502109704644, 0.046413502109704644, 0.510548523206751, 0.6708860759493671, 0.016877637130801686, 0.016877637130801686, 0.0379746835443038], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Semialdhyde_dhC.gap.json b/pfam_gap_rates/Semialdhyde_dhC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b0bc935e351f4387fcd690f38076f549a205d7d
--- /dev/null
+++ b/pfam_gap_rates/Semialdhyde_dhC.gap.json
@@ -0,0 +1 @@
+{"family": "Semialdhyde_dhC", "n_seqs": 3529, "length": 235, "gap_rates": [0.3655426466421082, 0.2810994616038538, 0.14621705865684329, 0.12609804477189004, 0.10966279399263247, 0.1017285349957495, 0.2133748937376027, 0.7248512326438085, 0.5415131765372627, 0.05780674412014735, 0.060073675262113914, 0.04703882119580618, 0.045621989232077075, 0.05383961462170587, 0.026919807310852934, 0.02521960895437801, 0.02465287616888637, 0.02521960895437801, 0.026353074525361293, 0.022669311419665626, 0.019552281099461603, 0.01700198356474922, 0.01643525077925758, 0.01643525077925758, 0.01643525077925758, 0.01643525077925758, 0.01643525077925758, 0.01643525077925758, 0.14820062340606405, 0.5279115896854633, 0.5279115896854633, 0.5284783224709549, 0.5293284216491924, 0.5290450552564466, 0.5375460470388213, 0.54576367242845, 0.553697931425333, 0.7931425332955512, 0.8056106545763673, 0.807594219325588, 0.8492490790592235, 0.8523661093794276, 0.8860867101161802, 0.910172853499575, 0.9158401813544914, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Sfi1.gap.json b/pfam_gap_rates/Sfi1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf7e64f0b10cc23c5cf5c95c7ef6c4260328b7bd
--- /dev/null
+++ b/pfam_gap_rates/Sfi1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ShlB.gap.json b/pfam_gap_rates/ShlB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16d5cdfc6913e50e9800fdabac970bacc052f5ba
--- /dev/null
+++ b/pfam_gap_rates/ShlB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma54_activ_2.gap.json b/pfam_gap_rates/Sigma54_activ_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12ebd8d4353459c6147bd105f5196a34c9a0189c
--- /dev/null
+++ b/pfam_gap_rates/Sigma54_activ_2.gap.json
@@ -0,0 +1 @@
+{"family": "Sigma54_activ_2", "n_seqs": 291, "length": 190, "gap_rates": [0.46735395189003437, 0.33676975945017185, 0.281786941580756, 0.21993127147766323, 0.1958762886597938, 0.16151202749140894, 0.14776632302405499, 0.13402061855670103, 0.12027491408934708, 0.10652920962199312, 0.09965635738831616, 0.09278350515463918, 0.07216494845360824, 0.06529209621993128, 0.048109965635738834, 0.041237113402061855, 0.037800687285223365, 0.037800687285223365, 0.024054982817869417, 0.020618556701030927, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.010309278350515464, 0.010309278350515464, 0.044673539518900345, 0.024054982817869417, 0.010309278350515464, 0.006872852233676976, 0.030927835051546393, 0.024054982817869417, 0.020618556701030927, 0.07903780068728522, 0.027491408934707903, 0.003436426116838488, 0.006872852233676976, 0.9312714776632303, 0.9415807560137457, 0.9381443298969072, 0.9106529209621993, 0.013745704467353952, 0.8109965635738832, 0.8419243986254296, 0.8591065292096219, 0.8247422680412371, 0.7766323024054983, 0.020618556701030927, 0.010309278350515464, 0.6082474226804123, 0.6597938144329897, 0.7525773195876289, 0.7869415807560137, 0.852233676975945, 0.8831615120274914, 0.9072164948453608, 0.9484536082474226, 0.9243986254295533, 0.8865979381443299, 0.865979381443299, 0.8178694158075601, 0.7663230240549829, 0.7044673539518901, 0.6151202749140894, 0.5945017182130584, 0.013745704467353952, 0.024054982817869417, 0.027491408934707903, 0.030927835051546393, 0.03436426116838488, 0.03436426116838488, 0.8556701030927835, 0.8865979381443299, 0.9312714776632303, 0.9450171821305842, 0.9209621993127147, 0.865979381443299, 0.8316151202749141, 0.013745704467353952, 0.8144329896907216, 0.8384879725085911, 0.8797250859106529, 0.9243986254295533, 0.9484536082474226, 0.9037800687285223, 0.8694158075601375, 0.8213058419243986, 0.8006872852233677, 0.01718213058419244, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.013745704467353952, 0.01718213058419244, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.01718213058419244, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.01718213058419244, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.020618556701030927, 0.027491408934707903, 0.024054982817869417, 0.020618556701030927, 0.020618556701030927, 0.8487972508591065, 0.8625429553264605, 0.8831615120274914, 0.9243986254295533, 0.9484536082474226, 0.9381443298969072, 0.9140893470790378, 0.8694158075601375, 0.8487972508591065, 0.8419243986254296, 0.024054982817869417, 0.30584192439862545, 0.845360824742268, 0.21305841924398625, 0.11683848797250859, 0.041237113402061855, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.041237113402061855, 0.041237113402061855, 0.054982817869415807, 0.05154639175257732, 0.048109965635738834, 0.054982817869415807, 0.06529209621993128, 0.07560137457044673, 0.09278350515463918, 0.19243986254295534, 0.16494845360824742, 0.13402061855670103, 0.13058419243986255, 0.13402061855670103, 0.1134020618556701, 0.1134020618556701, 0.12371134020618557, 0.12027491408934708, 0.12371134020618557, 0.12027491408934708, 0.13058419243986255, 0.13058419243986255, 0.13402061855670103, 0.13745704467353953, 0.13745704467353953, 0.140893470790378, 0.14432989690721648, 0.14432989690721648, 0.14776632302405499, 0.15120274914089346, 0.16151202749140894, 0.16838487972508592, 0.17869415807560138, 0.21993127147766323], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma70_ECF.gap.json b/pfam_gap_rates/Sigma70_ECF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..640778aaef803c9a6663d654f5ff53029ea9c552
--- /dev/null
+++ b/pfam_gap_rates/Sigma70_ECF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Spaetzle.gap.json b/pfam_gap_rates/Spaetzle.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c50fbc93145ec13cdb6a16c1808b036f89aa9a9c
--- /dev/null
+++ b/pfam_gap_rates/Spaetzle.gap.json
@@ -0,0 +1 @@
+{"family": "Spaetzle", "n_seqs": 209, "length": 105, "gap_rates": [0.291866028708134, 0.0861244019138756, 0.06698564593301436, 0.06698564593301436, 0.06698564593301436, 0.05741626794258373, 0.05263157894736842, 0.04784688995215311, 0.04784688995215311, 0.0430622009569378, 0.0430622009569378, 0.03827751196172249, 0.03827751196172249, 0.03349282296650718, 0.03827751196172249, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.028708133971291867, 0.028708133971291867, 0.028708133971291867, 0.028708133971291867, 0.028708133971291867, 0.937799043062201, 0.028708133971291867, 0.03349282296650718, 0.023923444976076555, 0.7272727272727273, 0.8564593301435407, 0.8803827751196173, 0.7703349282296651, 0.6411483253588517, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.028708133971291867, 0.028708133971291867, 0.15789473684210525, 0.1722488038277512, 0.84688995215311, 0.7033492822966507, 0.07655502392344497, 0.07655502392344497, 0.07177033492822966, 0.07655502392344497, 0.07177033492822966, 0.07177033492822966, 0.22488038277511962, 0.37799043062200954, 0.6842105263157895, 0.5454545454545454, 0.49282296650717705, 0.3062200956937799, 0.3014354066985646, 0.291866028708134, 0.22009569377990432, 0.07655502392344497, 0.06698564593301436, 0.06698564593301436, 0.06698564593301436, 0.06220095693779904, 0.06220095693779904, 0.06220095693779904, 0.06698564593301436, 0.06698564593301436, 0.06698564593301436, 0.06698564593301436, 0.07655502392344497, 0.07655502392344497, 0.07655502392344497, 0.07655502392344497, 0.07655502392344497, 0.5215311004784688, 0.09090909090909091, 0.09569377990430622, 0.09090909090909091, 0.09569377990430622, 0.5311004784688995, 0.3588516746411483, 0.09569377990430622, 0.09569377990430622, 0.09569377990430622, 0.09569377990430622, 0.09569377990430622, 0.10047846889952153, 0.10047846889952153, 0.10047846889952153, 0.10047846889952153, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.1339712918660287, 0.291866028708134], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spindle_Spc25.gap.json b/pfam_gap_rates/Spindle_Spc25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98fd9b40a8faa3f2cf0a4e6e9b867487689dd887
--- /dev/null
+++ b/pfam_gap_rates/Spindle_Spc25.gap.json
@@ -0,0 +1 @@
+{"family": "Spindle_Spc25", "n_seqs": 269, "length": 74, "gap_rates": [0.6059479553903345, 0.26765799256505574, 0.1412639405204461, 0.08921933085501858, 0.07063197026022305, 0.05947955390334572, 0.05947955390334572, 0.05947955390334572, 0.05947955390334572, 0.05947955390334572, 0.05947955390334572, 0.048327137546468404, 0.05204460966542751, 0.048327137546468404, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.03345724907063197, 0.03717472118959108, 0.05204460966542751, 0.026022304832713755, 0.01858736059479554, 0.01486988847583643, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.022304832713754646, 0.07063197026022305, 0.8736059479553904, 0.7137546468401487, 0.026022304832713755, 0.022304832713754646, 0.01486988847583643, 0.01486988847583643, 0.01858736059479554, 0.022304832713754646, 0.022304832713754646, 0.022304832713754646, 0.022304832713754646, 0.048327137546468404, 0.055762081784386616, 0.06691449814126393, 0.620817843866171, 0.6059479553903345, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.04460966542750929, 0.04460966542750929, 0.04460966542750929, 0.04460966542750929, 0.04460966542750929, 0.04460966542750929, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.05204460966542751, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.06319702602230483, 0.07063197026022305, 0.07063197026022305, 0.08550185873605948, 0.10408921933085502, 0.37174721189591076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spo12.gap.json b/pfam_gap_rates/Spo12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3446961806f4ea1b5cab3723b076771dd60d23d5
--- /dev/null
+++ b/pfam_gap_rates/Spo12.gap.json
@@ -0,0 +1 @@
+{"family": "Spo12", "n_seqs": 132, "length": 37, "gap_rates": [0.5681818181818182, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007575757575757576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06818181818181818, 0.09848484848484848, 0.09848484848484848, 0.12121212121212122, 0.12121212121212122, 0.12878787878787878, 0.12878787878787878, 0.13636363636363635, 0.9090909090909091, 0.7651515151515151, 0.13636363636363635, 0.14393939393939395, 0.8106060606060606, 0.17424242424242425, 0.18181818181818182, 0.19696969696969696, 0.24242424242424243, 0.8484848484848485, 0.3787878787878788, 0.4015151515151515, 0.4090909090909091, 0.5378787878787878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spond_N.gap.json b/pfam_gap_rates/Spond_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecc0bf0594ac1d8f848220d261c565d052e36bbd
--- /dev/null
+++ b/pfam_gap_rates/Spond_N.gap.json
@@ -0,0 +1 @@
+{"family": "Spond_N", "n_seqs": 307, "length": 214, "gap_rates": [0.498371335504886, 0.43973941368078173, 0.43322475570032576, 0.43322475570032576, 0.42996742671009774, 0.42996742671009774, 0.42996742671009774, 0.42996742671009774, 0.42671009771986973, 0.42671009771986973, 0.42671009771986973, 0.42671009771986973, 0.4234527687296417, 0.4201954397394137, 0.4201954397394137, 0.4201954397394137, 0.4201954397394137, 0.42671009771986973, 0.4201954397394137, 0.4201954397394137, 0.4201954397394137, 0.43973941368078173, 0.7361563517915309, 0.7166123778501629, 0.4234527687296417, 0.41042345276872966, 0.3745928338762215, 0.8013029315960912, 0.7882736156351792, 0.2671009771986971, 0.250814332247557, 0.23127035830618892, 0.21498371335504887, 0.19543973941368079, 0.18566775244299674, 0.18241042345276873, 0.1791530944625407, 0.16938110749185667, 0.17263843648208468, 0.17263843648208468, 0.17263843648208468, 0.16938110749185667, 0.16938110749185667, 0.16612377850162866, 0.15960912052117263, 0.1563517915309446, 0.1563517915309446, 0.15309446254071662, 0.15309446254071662, 0.15309446254071662, 0.15309446254071662, 0.15309446254071662, 0.15309446254071662, 0.15309446254071662, 0.15309446254071662, 0.15309446254071662, 0.1563517915309446, 0.1563517915309446, 0.1563517915309446, 0.15960912052117263, 0.15960912052117263, 0.15960912052117263, 0.16286644951140064, 0.16286644951140064, 0.16286644951140064, 0.16286644951140064, 0.16286644951140064, 0.16286644951140064, 0.15960912052117263, 0.16286644951140064, 0.16612377850162866, 0.15960912052117263, 0.15960912052117263, 0.16938110749185667, 0.8859934853420195, 0.9315960912052117, 0.8110749185667753, 0.30618892508143325, 0.30944625407166126, 0.28013029315960913, 0.9413680781758957, 0.9413680781758957, 0.9446254071661238, 0.9478827361563518, 0.9478827361563518, 0.9478827361563518, 0.9478827361563518, 0.9446254071661238, 0.9413680781758957, 0.9381107491856677, 0.2247557003257329, 0.1986970684039088, 0.19218241042345277, 0.18241042345276873, 0.18241042345276873, 0.18241042345276873, 0.1758957654723127, 0.17263843648208468, 0.1758957654723127, 0.1791530944625407, 0.1791530944625407, 0.18241042345276873, 0.8403908794788274, 0.9120521172638436, 0.9348534201954397, 0.8892508143322475, 0.5342019543973942, 0.4560260586319218, 0.20521172638436483, 0.18566775244299674, 0.1791530944625407, 0.1791530944625407, 0.17263843648208468, 0.16612377850162866, 0.16612377850162866, 0.16286644951140064, 0.16286644951140064, 0.15960912052117263, 0.15960912052117263, 0.16286644951140064, 0.15960912052117263, 0.16286644951140064, 0.16286644951140064, 0.16612377850162866, 0.16286644951140064, 0.16286644951140064, 0.15960912052117263, 0.15960912052117263, 0.15960912052117263, 0.15960912052117263, 0.15960912052117263, 0.1498371335504886, 0.1498371335504886, 0.15309446254071662, 0.1563517915309446, 0.1563517915309446, 0.1563517915309446, 0.15309446254071662, 0.15309446254071662, 0.1498371335504886, 0.1498371335504886, 0.15309446254071662, 0.15309446254071662, 0.1563517915309446, 0.15309446254071662, 0.16286644951140064, 0.16286644951140064, 0.17263843648208468, 0.1791530944625407, 0.4723127035830619, 0.2703583061889251, 0.24104234527687296, 0.2671009771986971, 0.254071661237785, 0.250814332247557, 0.23778501628664495, 0.20846905537459284, 0.20195439739413681, 0.20195439739413681, 0.19543973941368079, 0.18892508143322476, 0.18892508143322476, 0.18566775244299674, 0.18241042345276873, 0.18241042345276873, 0.18241042345276873, 0.18241042345276873, 0.18241042345276873, 0.18566775244299674, 0.18892508143322476, 0.19543973941368079, 0.250814332247557, 0.34527687296416937, 0.36156351791530944, 0.36156351791530944, 0.36482084690553745, 0.36482084690553745, 0.3713355048859935, 0.38436482084690554, 0.38436482084690554, 0.38436482084690554, 0.38762214983713356, 0.38762214983713356, 0.38762214983713356, 0.39087947882736157, 0.3941368078175896, 0.3941368078175896, 0.3941368078175896, 0.3941368078175896, 0.3941368078175896, 0.4006514657980456, 0.4006514657980456, 0.40716612377850164, 0.4169381107491857, 0.42996742671009774, 0.6091205211726385, 0.5928338762214984, 0.44625407166123776, 0.43973941368078173, 0.44299674267100975, 0.44299674267100975, 0.44299674267100975, 0.44299674267100975, 0.44625407166123776, 0.4527687296416938, 0.4527687296416938, 0.4527687296416938, 0.4592833876221498, 0.4592833876221498, 0.46254071661237783, 0.4788273615635179, 0.4820846905537459, 0.50814332247557, 0.5798045602605864], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_III_AF.gap.json b/pfam_gap_rates/Spore_III_AF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..323ad9e78689ae61e32b7be5a5eb31bd52dfb10f
--- /dev/null
+++ b/pfam_gap_rates/Spore_III_AF.gap.json
@@ -0,0 +1 @@
+{"family": "Spore_III_AF", "n_seqs": 297, "length": 248, "gap_rates": [0.4713804713804714, 0.21548821548821548, 0.10437710437710437, 0.07407407407407407, 0.05723905723905724, 0.050505050505050504, 0.04040404040404041, 0.037037037037037035, 0.03367003367003367, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.020202020202020204, 0.016835016835016835, 0.020202020202020204, 0.020202020202020204, 0.013468013468013467, 0.013468013468013467, 0.013468013468013467, 0.013468013468013467, 0.013468013468013467, 0.013468013468013467, 0.013468013468013467, 0.013468013468013467, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.006734006734006734, 0.006734006734006734, 0.006734006734006734, 0.006734006734006734, 0.006734006734006734, 0.006734006734006734, 0.006734006734006734, 0.006734006734006734, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Spt20.gap.json b/pfam_gap_rates/Spt20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b0f896fbd127f8a362d0457d0513997323e6b64
--- /dev/null
+++ b/pfam_gap_rates/Spt20.gap.json
@@ -0,0 +1 @@
+{"family": "Spt20", "n_seqs": 266, "length": 309, "gap_rates": [0.8834586466165414, 0.6541353383458647, 0.4849624060150376, 0.41353383458646614, 0.38345864661654133, 0.37593984962406013, 0.3684210526315789, 0.36466165413533835, 0.5488721804511278, 0.5300751879699248, 0.32706766917293234, 0.3233082706766917, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.31203007518796994, 0.7857142857142857, 0.7857142857142857, 0.7857142857142857, 0.7857142857142857, 0.7894736842105263, 0.924812030075188, 0.9210526315789473, 0.9135338345864662, 0.9022556390977443, 0.9022556390977443, 0.8984962406015038, 0.8872180451127819, 0.7781954887218046, 0.7706766917293233, 0.7556390977443609, 0.7105263157894737, 0.6842105263157895, 0.37218045112781956, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ssl1.gap.json b/pfam_gap_rates/Ssl1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f92a320e4356d253abd8b4e9f9e403a13c154d40
--- /dev/null
+++ b/pfam_gap_rates/Ssl1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SspH.gap.json b/pfam_gap_rates/SspH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09a02f9696548f5af059ba6901584faf01cccb37
--- /dev/null
+++ b/pfam_gap_rates/SspH.gap.json
@@ -0,0 +1 @@
+{"family": "SspH", "n_seqs": 146, "length": 58, "gap_rates": [0.02054794520547945, 0.00684931506849315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00684931506849315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.10273972602739725, 0.0547945205479452, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00684931506849315, 0.2945205479452055, 0.03424657534246575, 0.0136986301369863, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0273972602739726, 0.0547945205479452], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ssu72.gap.json b/pfam_gap_rates/Ssu72.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d8dc952cb58690c5551e7920c43cff0ac258b72
--- /dev/null
+++ b/pfam_gap_rates/Ssu72.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sterol-sensing.gap.json b/pfam_gap_rates/Sterol-sensing.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11ef77641dcf690e9af863d9e5f6a216fe536266
--- /dev/null
+++ b/pfam_gap_rates/Sterol-sensing.gap.json
@@ -0,0 +1 @@
+{"family": "Sterol-sensing", "n_seqs": 660, "length": 174, "gap_rates": [0.9196969696969697, 0.5151515151515151, 0.2727272727272727, 0.23030303030303031, 0.2196969696969697, 0.18787878787878787, 0.17272727272727273, 0.16363636363636364, 0.15303030303030302, 0.1409090909090909, 0.13333333333333333, 0.12575757575757576, 0.12424242424242424, 0.12424242424242424, 0.12272727272727273, 0.12121212121212122, 0.11969696969696969, 0.11818181818181818, 0.11818181818181818, 0.11818181818181818, 0.11818181818181818, 0.11818181818181818, 0.11666666666666667, 0.11515151515151516, 0.11515151515151516, 0.11515151515151516, 0.11363636363636363, 0.11363636363636363, 0.11212121212121212, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.10909090909090909, 0.10909090909090909, 0.11060606060606061, 0.10909090909090909, 0.11060606060606061, 0.8803030303030303, 0.11212121212121212, 0.24545454545454545, 0.11666666666666667, 0.10909090909090909, 0.10909090909090909, 0.10757575757575757, 0.10757575757575757, 0.11060606060606061, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10454545454545454, 0.10454545454545454, 0.10303030303030303, 0.10151515151515152, 0.10454545454545454, 0.10303030303030303, 0.10151515151515152, 0.09848484848484848, 0.09545454545454546, 0.09848484848484848, 0.09545454545454546, 0.09696969696969697, 0.10757575757575757, 0.10606060606060606, 0.10454545454545454, 0.0893939393939394, 0.0893939393939394, 0.08333333333333333, 0.08333333333333333, 0.10303030303030303, 0.5727272727272728, 0.8212121212121212, 0.85, 0.8621212121212121, 0.8757575757575757, 0.896969696969697, 0.9166666666666666, 0.9287878787878788, 0.943939393939394, 0.9348484848484848, 0.9181818181818182, 0.906060606060606, 0.8909090909090909, 0.8681818181818182, 0.8560606060606061, 0.8333333333333334, 0.7242424242424242, 0.543939393939394, 0.0803030303030303, 0.07424242424242425, 0.06666666666666667, 0.05757575757575758, 0.05606060606060606, 0.051515151515151514, 0.05303030303030303, 0.051515151515151514, 0.048484848484848485, 0.04696969696969697, 0.04696969696969697, 0.04696969696969697, 0.04696969696969697, 0.04696969696969697, 0.04696969696969697, 0.045454545454545456, 0.04393939393939394, 0.04393939393939394, 0.045454545454545456, 0.04393939393939394, 0.04090909090909091, 0.04090909090909091, 0.04090909090909091, 0.04242424242424243, 0.04242424242424243, 0.04393939393939394, 0.04393939393939394, 0.9045454545454545, 0.04242424242424243, 0.04090909090909091, 0.1, 0.04090909090909091, 0.04242424242424243, 0.04242424242424243, 0.04393939393939394, 0.04242424242424243, 0.9015151515151515, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04393939393939394, 0.04393939393939394, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.04393939393939394, 0.04696969696969697, 0.04696969696969697, 0.04696969696969697, 0.05, 0.048484848484848485, 0.048484848484848485, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05606060606060606, 0.06212121212121212, 0.06212121212121212, 0.06212121212121212, 0.06818181818181818, 0.0696969696969697, 0.07121212121212121, 0.07878787878787878, 0.0803030303030303, 0.09090909090909091, 0.09848484848484848, 0.11818181818181818, 0.1409090909090909, 0.17727272727272728, 0.2606060606060606, 0.27575757575757576, 0.8681818181818182, 0.3333333333333333, 0.38181818181818183, 0.453030303030303, 0.5257575757575758, 0.5954545454545455, 0.6287878787878788, 0.6606060606060606, 0.6833333333333333, 0.696969696969697, 0.7136363636363636, 0.7378787878787879, 0.7878787878787878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Stk19.gap.json b/pfam_gap_rates/Stk19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdf67f767fa302ddf1432e30144211999c4f96a0
--- /dev/null
+++ b/pfam_gap_rates/Stk19.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Stress-antifung.gap.json b/pfam_gap_rates/Stress-antifung.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..044c77fde5082d189ea02f3bb2e08d280de59729
--- /dev/null
+++ b/pfam_gap_rates/Stress-antifung.gap.json
@@ -0,0 +1 @@
+{"family": "Stress-antifung", "n_seqs": 2948, "length": 120, "gap_rates": [0.591248303934871, 0.8951831750339213, 0.6082089552238806, 0.6702849389416553, 0.7371099050203528, 0.8683853459972863, 0.5569877883310719, 0.45827679782903663, 0.43453188602442333, 0.34531886024423336, 0.291044776119403, 0.2466078697421981, 0.19674355495251017, 0.17265943012211668, 0.15773405698778833, 0.14789687924016282, 0.13704206241519673, 0.12686567164179105, 0.11804613297150611, 0.11092265943012211, 0.0980325644504749, 0.08616010854816825, 0.08039348710990502, 0.0780189959294437, 0.07632293080054274, 0.07598371777476255, 0.9443690637720489, 0.8819538670284939, 0.10651289009497965, 0.12449118046132972, 0.11736770691994572, 0.10278154681139756, 0.9494572591587517, 0.11363636363636363, 0.14755766621438263, 0.26967435549525104, 0.844640434192673, 0.9308005427408412, 0.8873812754409769, 0.75, 0.4908412483039349, 0.5315468113975577, 0.21641791044776118, 0.9056987788331072, 0.7822252374491181, 0.054274084124830396, 0.05359565807327001, 0.7486431478968792, 0.6638398914518318, 0.05800542740841248, 0.07835820895522388, 0.06275440976933515, 0.7215061058344641, 0.932157394843962, 0.8921302578018996, 0.6614654002713705, 0.012890094979647219, 0.0980325644504749, 0.2432157394843962, 0.6753731343283582, 0.914179104477612, 0.7727272727272727, 0.5600407055630936, 0.17435549525101765, 0.06546811397557666, 0.009158751696065129, 0.0067842605156037995, 0.006445047489823609, 0.006445047489823609, 0.00508819538670285, 0.004409769335142469, 0.0027137042062415195, 0.0023744911804613297, 0.0023744911804613297, 0.0020352781546811396, 0.0016960651289009499, 0.006445047489823609, 0.005766621438263229, 0.0047489823609226595, 0.007123473541383989, 0.006105834464043419, 0.0020352781546811396, 0.0020352781546811396, 0.0027137042062415195, 0.0030529172320217096, 0.0030529172320217096, 0.0033921302578018998, 0.0033921302578018998, 0.004409769335142469, 0.02408412483039349, 0.027137042062415198, 0.8229308005427408, 0.02103120759837178, 0.15739484396200815, 0.9341926729986432, 0.47218453188602444, 0.05834464043419267, 0.01797829036635007, 0.020013568521031207, 0.05529172320217096, 0.029850746268656716, 0.8351424694708277, 0.027137042062415198, 0.019335142469470826, 0.018995929443690638, 0.021370420624151967, 0.02408412483039349, 0.03154681139755767, 0.027476255088195387, 0.031207598371777476, 0.04002713704206241, 0.03426051560379918, 0.027137042062415198, 0.027815468113975575, 0.028833107191316147, 0.033582089552238806, 0.039687924016282225, 0.07835820895522388, 0.29341926729986434, 0.8792401628222524], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Synaptobrevin.gap.json b/pfam_gap_rates/Synaptobrevin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..394f535a987a8348b33a1a68f072466a8b206911
--- /dev/null
+++ b/pfam_gap_rates/Synaptobrevin.gap.json
@@ -0,0 +1 @@
+{"family": "Synaptobrevin", "n_seqs": 1983, "length": 89, "gap_rates": [0.9485627836611196, 0.4467977811396873, 0.1815431164901664, 0.13010590015128592, 0.09480584972264246, 0.08825012607160868, 0.07866868381240545, 0.07211296016137166, 0.06959152798789713, 0.05849722642460918, 0.05345436207766011, 0.05194150277357539, 0.05042864346949067, 0.04589006555723651, 0.044377206253151794, 0.044377206253151794, 0.04236006051437216, 0.04084720121028744, 0.02773575390821987, 0.02773575390821987, 0.026222894604135148, 0.025718608169440244, 0.023701462430660614, 0.014120020171457387, 0.013111447302067574, 0.010085728693898134, 0.007564296520423601, 0.007564296520423601, 0.0070600100857286935, 0.0070600100857286935, 0.006555723651033787, 0.006555723651033787, 0.006051437216338881, 0.006051437216338881, 0.006555723651033787, 0.006555723651033787, 0.006555723651033787, 0.006555723651033787, 0.0070600100857286935, 0.007564296520423601, 0.009581442259203227, 0.011094301563287948, 0.011598587997982855, 0.012102874432677761, 0.013111447302067574, 0.018154311649016642, 0.02168431669188099, 0.023701462430660614, 0.026222894604135148, 0.029752899646999495, 0.029752899646999495, 0.03177004538577912, 0.03530005042864347, 0.03983862834089763, 0.03983862834089763, 0.04236006051437216, 0.04639435199193142, 0.050932929904185575, 0.16389309127584467, 0.20121028744326777, 0.2102874432677761, 0.22239031770045387, 0.23651033787191125, 0.25113464447806355, 0.25718608169440244, 0.26626323751891073, 0.27987897125567324, 0.2793746848209783, 0.28038325769036815, 0.2813918305597579, 0.28290468986384265, 0.2854261220373172, 0.2874432677760968, 0.28996469994957136, 0.28996469994957136, 0.28946041351487645, 0.29046898638426627, 0.2939989914271306, 0.3000504286434695, 0.3111447302067574, 0.3202218860312658, 0.35703479576399394, 0.41553202218860313, 0.4422592032274332, 0.49420070600100857, 0.5163893091275845, 0.5466464952092789, 0.6545637922339889, 0.8119011598587998], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T2SSG.gap.json b/pfam_gap_rates/T2SSG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df9c42027f6df454cfa973e2497c015cd852a8ec
--- /dev/null
+++ b/pfam_gap_rates/T2SSG.gap.json
@@ -0,0 +1 @@
+{"family": "T2SSG", "n_seqs": 779, "length": 114, "gap_rates": [0.5173299101412067, 0.3209242618741977, 0.2734274711168164, 0.2374839537869063, 0.20154043645699615, 0.15789473684210525, 0.1245186136071887, 0.09499358151476252, 0.0834403080872914, 0.07317073170731707, 0.06290115532734275, 0.05391527599486521, 0.05006418485237484, 0.04878048780487805, 0.04621309370988447, 0.043645699614890884, 0.043645699614890884, 0.043645699614890884, 0.0410783055198973, 0.037227214377406934, 0.037227214377406934, 0.037227214377406934, 0.037227214377406934, 0.037227214377406934, 0.037227214377406934, 0.037227214377406934, 0.037227214377406934, 0.03594351732991014, 0.03594351732991014, 0.03594351732991014, 0.037227214377406934, 0.03594351732991014, 0.03594351732991014, 0.03465982028241335, 0.03465982028241335, 0.03465982028241335, 0.03594351732991014, 0.18870346598202825, 0.1925545571245186, 0.18613607188703465, 0.07060333761232349, 0.06546854942233633, 0.057766367137355584, 0.05263157894736842, 0.05263157894736842, 0.05648267008985879, 0.05648267008985879, 0.06290115532734275, 0.07060333761232349, 0.08472400513478819, 0.08729139922978177, 0.09499358151476252, 0.5686777920410783, 0.5070603337612324, 0.4287548138639281, 0.1643132220795892, 0.12836970474967907, 0.110397946084724, 0.6238767650834403, 0.09370988446726572, 0.14377406931964057, 0.057766367137355584, 0.05391527599486521, 0.057766367137355584, 0.7715019255455713, 0.558408215661104, 0.057766367137355584, 0.04878048780487805, 0.0410783055198973, 0.038510911424903725, 0.038510911424903725, 0.03594351732991014, 0.03594351732991014, 0.0410783055198973, 0.04236200256739409, 0.04621309370988447, 0.05006418485237484, 0.05391527599486521, 0.055198973042362, 0.05648267008985879, 0.057766367137355584, 0.07445442875481387, 0.08600770218228498, 0.08600770218228498, 0.17843388960205392, 0.17586649550706032, 0.9242618741976893, 0.11938382541720154, 0.8048780487804879, 0.11553273427471117, 0.1116816431322208, 0.11810012836970475, 0.12323491655969192, 0.13222079589216945, 0.1527599486521181, 0.17073170731707318, 0.18998716302952504, 0.20025673940949937, 0.20410783055198972, 0.21181001283697048, 0.21437740693196405, 0.22721437740693196, 0.251604621309371, 0.2593068035943517, 0.2644415917843389, 0.27214377406931967, 0.40436456996148906, 0.4197689345314506, 0.42105263157894735, 0.34403080872913994, 0.3465982028241335, 0.3645699614890886, 0.4711168164313222, 0.5378690629011553], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T2SSI.gap.json b/pfam_gap_rates/T2SSI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..404a8c6787ec3672789224dc22f50eaecf06fa2d
--- /dev/null
+++ b/pfam_gap_rates/T2SSI.gap.json
@@ -0,0 +1 @@
+{"family": "T2SSI", "n_seqs": 219, "length": 89, "gap_rates": [0.2557077625570776, 0.1324200913242009, 0.0547945205479452, 0.0182648401826484, 0.0136986301369863, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045662100456621, 0.0, 0.0182648401826484, 0.0136986301369863, 0.0365296803652968, 0.0547945205479452, 0.9360730593607306, 0.0502283105022831, 0.0319634703196347, 0.0182648401826484, 0.9269406392694064, 0.9452054794520548, 0.9178082191780822, 0.045662100456621, 0.0365296803652968, 0.0182648401826484, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045662100456621, 0.0045662100456621, 0.0182648401826484, 0.9406392694063926, 0.0228310502283105, 0.0, 0.0045662100456621, 0.0091324200913242, 0.0091324200913242, 0.0182648401826484, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.9269406392694064, 0.9497716894977168, 0.9406392694063926, 0.9269406392694064, 0.228310502283105, 0.2054794520547945, 0.1735159817351598, 0.8538812785388128, 0.1552511415525114, 0.0639269406392694, 0.045662100456621, 0.0502283105022831, 0.0593607305936073, 0.0684931506849315, 0.091324200913242, 0.1141552511415525, 0.1187214611872146, 0.1278538812785388, 0.1552511415525114, 0.1780821917808219, 0.3333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T2SSJ.gap.json b/pfam_gap_rates/T2SSJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..133872a359b3031aa397886435e9205bb542c7d5
--- /dev/null
+++ b/pfam_gap_rates/T2SSJ.gap.json
@@ -0,0 +1 @@
+{"family": "T2SSJ", "n_seqs": 211, "length": 180, "gap_rates": [0.3981042654028436, 0.3222748815165877, 0.2985781990521327, 0.2938388625592417, 0.2938388625592417, 0.2843601895734597, 0.2796208530805687, 0.27014218009478674, 0.27014218009478674, 0.26540284360189575, 0.26066350710900477, 0.2559241706161137, 0.24644549763033174, 0.24644549763033174, 0.23696682464454977, 0.24170616113744076, 0.2796208530805687, 0.24170616113744076, 0.24644549763033174, 0.22748815165876776, 0.22748815165876776, 0.1943127962085308, 0.8957345971563981, 0.6872037914691943, 0.17535545023696683, 0.16113744075829384, 0.16587677725118483, 0.15165876777251186, 0.8009478672985783, 0.909952606635071, 0.6635071090047393, 0.5687203791469194, 0.46919431279620855, 0.3791469194312796, 0.3033175355450237, 0.25118483412322273, 0.0995260663507109, 0.0947867298578199, 0.09004739336492891, 0.0947867298578199, 0.0947867298578199, 0.09004739336492891, 0.09004739336492891, 0.0947867298578199, 0.0947867298578199, 0.09004739336492891, 0.11374407582938388, 0.10900473933649289, 0.0995260663507109, 0.0947867298578199, 0.09004739336492891, 0.12322274881516587, 0.13270142180094788, 0.12796208530805686, 0.5402843601895735, 0.17535545023696683, 0.13744075829383887, 0.12322274881516587, 0.11374407582938388, 0.0947867298578199, 0.07109004739336493, 0.06635071090047394, 0.061611374407582936, 0.06635071090047394, 0.061611374407582936, 0.061611374407582936, 0.061611374407582936, 0.061611374407582936, 0.7962085308056872, 0.8199052132701422, 0.8767772511848341, 0.9289099526066351, 0.943127962085308, 0.9478672985781991, 0.933649289099526, 0.8957345971563981, 0.8578199052132701, 0.8199052132701422, 0.7914691943127962, 0.061611374407582936, 0.06635071090047394, 0.052132701421800945, 0.8672985781990521, 0.052132701421800945, 0.04739336492890995, 0.05687203791469194, 0.052132701421800945, 0.037914691943127965, 0.037914691943127965, 0.037914691943127965, 0.07109004739336493, 0.07109004739336493, 0.07109004739336493, 0.06635071090047394, 0.061611374407582936, 0.06635071090047394, 0.04739336492890995, 0.08056872037914692, 0.9478672985781991, 0.06635071090047394, 0.04265402843601896, 0.03317535545023697, 0.09004739336492891, 0.08056872037914692, 0.9289099526066351, 0.03317535545023697, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.009478672985781991, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.023696682464454975, 0.023696682464454975, 0.018957345971563982, 0.014218009478672985, 0.018957345971563982, 0.8341232227488151, 0.8436018957345972, 0.8815165876777251, 0.909952606635071, 0.9241706161137441, 0.9478672985781991, 0.9478672985781991, 0.9241706161137441, 0.9004739336492891, 0.8720379146919431, 0.8341232227488151, 0.7488151658767772, 0.4265402843601896, 0.05687203791469194, 0.023696682464454975, 0.018957345971563982, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.014218009478672985, 0.09004739336492891, 0.24170616113744076, 0.27488151658767773, 0.45023696682464454, 0.4881516587677725, 0.6872037914691943, 0.8199052132701422, 0.8909952606635071, 0.933649289099526, 0.943127962085308, 0.909952606635071, 0.8625592417061612, 0.7677725118483413, 0.5971563981042654, 0.04739336492890995, 0.037914691943127965, 0.023696682464454975, 0.02843601895734597, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.023696682464454975, 0.02843601895734597, 0.04739336492890995, 0.09004739336492891, 0.12322274881516587, 0.17061611374407584, 0.2132701421800948, 0.24170616113744076, 0.26540284360189575, 0.2843601895734597, 0.3459715639810427, 0.3744075829383886, 0.4928909952606635], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T6SS-SciN.gap.json b/pfam_gap_rates/T6SS-SciN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..069169271f321afe55bdec1fbac248fa0b9623f0
--- /dev/null
+++ b/pfam_gap_rates/T6SS-SciN.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/T6SS_TssF.gap.json b/pfam_gap_rates/T6SS_TssF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a89bea2782de168bffa14e9297bd07c7ef4645c
--- /dev/null
+++ b/pfam_gap_rates/T6SS_TssF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TACC.gap.json b/pfam_gap_rates/TACC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb4a15f70333dc6ad895eb4f8dcd724aeb63c8dc
--- /dev/null
+++ b/pfam_gap_rates/TACC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TAF8_C.gap.json b/pfam_gap_rates/TAF8_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ae96b09158a27234f7c8587d33240ae11a9899b
--- /dev/null
+++ b/pfam_gap_rates/TAF8_C.gap.json
@@ -0,0 +1 @@
+{"family": "TAF8_C", "n_seqs": 289, "length": 50, "gap_rates": [0.21453287197231835, 0.1453287197231834, 0.0726643598615917, 0.04152249134948097, 0.010380622837370242, 0.0034602076124567475, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0034602076124567475, 0.006920415224913495, 0.006920415224913495, 0.006920415224913495, 0.010380622837370242, 0.01384083044982699, 0.01730103806228374, 0.916955017301038, 0.03806228373702422, 0.03460207612456748, 0.04844290657439446, 0.11418685121107267, 0.0657439446366782, 0.0657439446366782, 0.0657439446366782, 0.0657439446366782, 0.06920415224913495, 0.06920415224913495, 0.06920415224913495, 0.0726643598615917, 0.07612456747404844, 0.07612456747404844, 0.07958477508650519, 0.08304498269896193, 0.08304498269896193, 0.08304498269896193, 0.08996539792387544, 0.10034602076124567, 0.10034602076124567, 0.10726643598615918, 0.10726643598615918, 0.11418685121107267, 0.13494809688581316, 0.21107266435986158], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TAFH.gap.json b/pfam_gap_rates/TAFH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e70d8d5beab32a98eb314089ed914e617de1550
--- /dev/null
+++ b/pfam_gap_rates/TAFH.gap.json
@@ -0,0 +1 @@
+{"family": "TAFH", "n_seqs": 199, "length": 94, "gap_rates": [0.7135678391959799, 0.19597989949748743, 0.11557788944723618, 0.10050251256281408, 0.09547738693467336, 0.08542713567839195, 0.07035175879396985, 0.06030150753768844, 0.06030150753768844, 0.06532663316582915, 0.06030150753768844, 0.06030150753768844, 0.06532663316582915, 0.06532663316582915, 0.06532663316582915, 0.06030150753768844, 0.6834170854271356, 0.9447236180904522, 0.9296482412060302, 0.6432160804020101, 0.06532663316582915, 0.06532663316582915, 0.06030150753768844, 0.06030150753768844, 0.06030150753768844, 0.06532663316582915, 0.06030150753768844, 0.06030150753768844, 0.06030150753768844, 0.05527638190954774, 0.06030150753768844, 0.06030150753768844, 0.06030150753768844, 0.06030150753768844, 0.06030150753768844, 0.05025125628140704, 0.05025125628140704, 0.05025125628140704, 0.04522613065326633, 0.035175879396984924, 0.04522613065326633, 0.04522613065326633, 0.035175879396984924, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.035175879396984924, 0.035175879396984924, 0.04020100502512563, 0.04020100502512563, 0.035175879396984924, 0.035175879396984924, 0.035175879396984924, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.05025125628140704, 0.06532663316582915, 0.07537688442211055, 0.08040201005025126, 0.08040201005025126, 0.08040201005025126, 0.08040201005025126, 0.08542713567839195, 0.09045226130653267, 0.09045226130653267, 0.09045226130653267, 0.09547738693467336, 0.09547738693467336, 0.11055276381909548, 0.135678391959799, 0.1407035175879397, 0.1407035175879397, 0.1507537688442211, 0.15577889447236182, 0.18090452261306533, 0.19095477386934673, 0.23115577889447236, 0.25125628140703515, 0.32663316582914576, 0.7135678391959799], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TAT_signal.gap.json b/pfam_gap_rates/TAT_signal.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6845b5f6f9f9d5cae9d9f7f95bd77dd94410067
--- /dev/null
+++ b/pfam_gap_rates/TAT_signal.gap.json
@@ -0,0 +1 @@
+{"family": "TAT_signal", "n_seqs": 1006, "length": 26, "gap_rates": [0.6322067594433399, 0.12823061630218688, 0.012922465208747515, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0009940357852882703, 0.0009940357852882703, 0.0, 0.0, 0.0, 0.0, 0.0009940357852882703, 0.0, 0.002982107355864811, 0.013916500994035786, 0.032803180914512925, 0.06660039761431412, 0.16202783300198806, 0.2355864811133201, 0.3797216699801193, 0.6252485089463221, 0.9463220675944334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TB.gap.json b/pfam_gap_rates/TB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89df4d7a64c4c7715c4103affe649449e0e4fea5
--- /dev/null
+++ b/pfam_gap_rates/TB.gap.json
@@ -0,0 +1 @@
+{"family": "TB", "n_seqs": 860, "length": 50, "gap_rates": [0.5348837209302325, 0.11046511627906977, 0.07674418604651163, 0.05581395348837209, 0.05116279069767442, 0.04534883720930233, 0.03604651162790698, 0.020930232558139535, 0.8872093023255814, 0.004651162790697674, 0.0011627906976744186, 0.0011627906976744186, 0.002325581395348837, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8162790697674419, 0.0, 0.9430232558139535, 0.8302325581395349, 0.0, 0.9011627906976745, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9232558139534883, 0.8523255813953489, 0.0, 0.010465116279069767, 0.0, 0.0011627906976744186, 0.9406976744186046, 0.9406976744186046, 0.0011627906976744186, 0.0034883720930232558, 0.013953488372093023, 0.027906976744186046, 0.08255813953488372, 0.12441860465116279, 0.15232558139534882, 0.1872093023255814, 0.2686046511627907, 0.27906976744186046, 0.30465116279069765, 0.4104651162790698, 0.5569767441860465], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TCP.gap.json b/pfam_gap_rates/TCP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8e6291d157e1f903b86ed2b8e592a31865da41d
--- /dev/null
+++ b/pfam_gap_rates/TCP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TCR.gap.json b/pfam_gap_rates/TCR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e33cafc5797083de8375ad86b527bcb3a109e41d
--- /dev/null
+++ b/pfam_gap_rates/TCR.gap.json
@@ -0,0 +1 @@
+{"family": "TCR", "n_seqs": 931, "length": 38, "gap_rates": [0.7969924812030075, 0.15574650912996776, 0.034371643394199784, 0.02900107411385607, 0.027926960257787327, 0.027926960257787327, 0.03544575725026853, 0.02685284640171858, 0.027926960257787327, 0.02685284640171858, 0.01933404940923738, 0.01611170784103115, 0.010741138560687433, 0.0053705692803437165, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0010741138560687433, 0.008592910848549946, 0.00966702470461869, 0.010741138560687433, 0.013963480128893663, 0.013963480128893663, 0.015037593984962405, 0.015037593984962405, 0.22126745435016112, 0.017185821697099892, 0.015037593984962405, 0.01611170784103115, 0.01611170784103115, 0.017185821697099892, 0.018259935553168637, 0.021482277121374866, 0.02577873254564984, 0.11707841031149302, 0.9108485499462943], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TENA_THI-4.gap.json b/pfam_gap_rates/TENA_THI-4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7ee3e5b54518d4358d970756b6b4d4fd93afe26
--- /dev/null
+++ b/pfam_gap_rates/TENA_THI-4.gap.json
@@ -0,0 +1 @@
+{"family": "TENA_THI-4", "n_seqs": 1125, "length": 226, "gap_rates": [0.9182222222222223, 0.6737777777777778, 0.552, 0.48, 0.4231111111111111, 0.3635555555555556, 0.3164444444444444, 0.26311111111111113, 0.24622222222222223, 0.24, 0.20355555555555555, 0.192, 0.18577777777777776, 0.9066666666666666, 0.8382222222222222, 0.17244444444444446, 0.11022222222222222, 0.09777777777777778, 0.09688888888888889, 0.09688888888888889, 0.096, 0.08888888888888889, 0.08888888888888889, 0.088, 0.088, 0.08711111111111111, 0.09155555555555556, 0.08977777777777778, 0.08888888888888889, 0.08444444444444445, 0.08088888888888889, 0.07644444444444444, 0.07644444444444444, 0.07644444444444444, 0.07733333333333334, 0.07733333333333334, 0.07555555555555556, 0.072, 0.07288888888888889, 0.07377777777777778, 0.07377777777777778, 0.07466666666666667, 0.07288888888888889, 0.07111111111111111, 0.072, 0.07466666666666667, 0.07466666666666667, 0.07555555555555556, 0.07555555555555556, 0.07466666666666667, 0.07466666666666667, 0.07644444444444444, 0.08177777777777778, 0.07822222222222222, 0.07555555555555556, 0.07644444444444444, 0.07733333333333334, 0.07733333333333334, 0.0791111111111111, 0.08, 0.0791111111111111, 0.0791111111111111, 0.07822222222222222, 0.328, 0.10311111111111111, 0.08355555555555555, 0.0791111111111111, 0.0791111111111111, 0.07466666666666667, 0.07288888888888889, 0.07466666666666667, 0.07377777777777778, 0.07377777777777778, 0.07288888888888889, 0.07644444444444444, 0.072, 0.07377777777777778, 0.8142222222222222, 0.8266666666666667, 0.9493333333333334, 0.832, 0.8142222222222222, 0.8, 0.072, 0.072, 0.072, 0.072, 0.07288888888888889, 0.07466666666666667, 0.07733333333333334, 0.08, 0.08711111111111111, 0.08711111111111111, 0.09066666666666667, 0.09244444444444444, 0.09333333333333334, 0.08977777777777778, 0.09066666666666667, 0.088, 0.09422222222222222, 0.8106666666666666, 0.2862222222222222, 0.2693333333333333, 0.21244444444444444, 0.11644444444444445, 0.07377777777777778, 0.06577777777777778, 0.06222222222222222, 0.072, 0.06755555555555555, 0.064, 0.06488888888888888, 0.06311111111111112, 0.06311111111111112, 0.064, 0.06488888888888888, 0.06577777777777778, 0.06577777777777778, 0.07111111111111111, 0.07022222222222223, 0.07644444444444444, 0.9493333333333334, 0.07377777777777778, 0.07288888888888889, 0.08355555555555555, 0.08177777777777778, 0.06577777777777778, 0.056, 0.05511111111111111, 0.05511111111111111, 0.056, 0.057777777777777775, 0.05688888888888889, 0.057777777777777775, 0.05688888888888889, 0.057777777777777775, 0.057777777777777775, 0.05688888888888889, 0.05688888888888889, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.059555555555555556, 0.059555555555555556, 0.059555555555555556, 0.07377777777777778, 0.06488888888888888, 0.06311111111111112, 0.064, 0.10311111111111111, 0.09244444444444444, 0.1608888888888889, 0.15644444444444444, 0.8631111111111112, 0.9262222222222222, 0.9431111111111111, 0.904, 0.7484444444444445, 0.4631111111111111, 0.34044444444444444, 0.24444444444444444, 0.22666666666666666, 0.22311111111111112, 0.24355555555555555, 0.07111111111111111, 0.07022222222222223, 0.07111111111111111, 0.07111111111111111, 0.06933333333333333, 0.06844444444444445, 0.07022222222222223, 0.07288888888888889, 0.07111111111111111, 0.07111111111111111, 0.07111111111111111, 0.08888888888888889, 0.0791111111111111, 0.07555555555555556, 0.07288888888888889, 0.072, 0.07022222222222223, 0.072, 0.07555555555555556, 0.09155555555555556, 0.08888888888888889, 0.09066666666666667, 0.08977777777777778, 0.08622222222222223, 0.08622222222222223, 0.08622222222222223, 0.09155555555555556, 0.10222222222222223, 0.104, 0.10311111111111111, 0.14577777777777778, 0.13866666666666666, 0.13422222222222221, 0.15911111111111112, 0.16533333333333333, 0.9466666666666667, 0.7457777777777778, 0.11911111111111111, 0.112, 0.10755555555555556, 0.10488888888888889, 0.10488888888888889, 0.10488888888888889, 0.10577777777777778, 0.10577777777777778, 0.10666666666666667, 0.10755555555555556, 0.10755555555555556, 0.10755555555555556, 0.1111111111111111, 0.112, 0.112, 0.11288888888888889, 0.11555555555555555, 0.11555555555555555, 0.12266666666666666, 0.14844444444444443, 0.19466666666666665, 0.2702222222222222, 0.3466666666666667, 0.4951111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIA.gap.json b/pfam_gap_rates/TFIIA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6ff5e42accc077bb926aaf485739e0deb285582
--- /dev/null
+++ b/pfam_gap_rates/TFIIA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIE_beta.gap.json b/pfam_gap_rates/TFIIE_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17cc9abdd8d09d30d4cd29e62684f3cf8e9d0113
--- /dev/null
+++ b/pfam_gap_rates/TFIIE_beta.gap.json
@@ -0,0 +1 @@
+{"family": "TFIIE_beta", "n_seqs": 275, "length": 86, "gap_rates": [0.6836363636363636, 0.31272727272727274, 0.13454545454545455, 0.06909090909090909, 0.04, 0.04, 0.03636363636363636, 0.02909090909090909, 0.02909090909090909, 0.02909090909090909, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.68, 0.9490909090909091, 0.6545454545454545, 0.02181818181818182, 0.04363636363636364, 0.01090909090909091, 0.6981818181818182, 0.7018181818181818, 0.6290909090909091, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.24, 0.92, 0.5672727272727273, 0.43272727272727274, 0.007272727272727273, 0.01818181818181818, 0.3418181818181818, 0.6872727272727273, 0.6036363636363636, 0.04, 0.12, 0.09454545454545454, 0.08363636363636363, 0.06545454545454546, 0.01090909090909091, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.8, 0.6872727272727273, 0.01818181818181818, 0.05090909090909091, 0.5272727272727272, 0.8109090909090909, 0.8109090909090909, 0.8618181818181818, 0.8727272727272727, 0.8581818181818182, 0.8109090909090909, 0.8109090909090909, 0.36727272727272725, 0.14909090909090908, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.01090909090909091, 0.014545454545454545, 0.03272727272727273, 0.13090909090909092, 0.2, 0.41454545454545455], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIIC_sub6.gap.json b/pfam_gap_rates/TFIIIC_sub6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ffbc0afed310acc33b45b4760e2af57abad69adf
--- /dev/null
+++ b/pfam_gap_rates/TFIIIC_sub6.gap.json
@@ -0,0 +1 @@
+{"family": "TFIIIC_sub6", "n_seqs": 230, "length": 35, "gap_rates": [0.3217391304347826, 0.24782608695652175, 0.14347826086956522, 0.1, 0.06086956521739131, 0.05652173913043478, 0.0391304347826087, 0.013043478260869565, 0.013043478260869565, 0.013043478260869565, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8608695652173913, 0.0, 0.0, 0.017391304347826087, 0.0, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.034782608695652174, 0.12608695652173912], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TGF_beta.gap.json b/pfam_gap_rates/TGF_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7093356943e6c7d8059001fd18c0226f161757d0
--- /dev/null
+++ b/pfam_gap_rates/TGF_beta.gap.json
@@ -0,0 +1 @@
+{"family": "TGF_beta", "n_seqs": 1095, "length": 115, "gap_rates": [0.9470319634703196, 0.13515981735159818, 0.04474885844748858, 0.04474885844748858, 0.042922374429223746, 0.042922374429223746, 0.042922374429223746, 0.039269406392694065, 0.03744292237442922, 0.03561643835616438, 0.03561643835616438, 0.03561643835616438, 0.94337899543379, 0.033789954337899546, 0.0319634703196347, 0.031050228310502283, 0.031050228310502283, 0.030136986301369864, 0.2639269406392694, 0.08584474885844749, 0.04474885844748858, 0.031050228310502283, 0.024657534246575342, 0.023744292237442923, 0.023744292237442923, 0.021917808219178082, 0.01643835616438356, 0.01643835616438356, 0.01643835616438356, 0.014611872146118721, 0.014611872146118721, 0.014611872146118721, 0.015525114155251141, 0.015525114155251141, 0.015525114155251141, 0.014611872146118721, 0.014611872146118721, 0.7205479452054795, 0.7296803652968037, 0.6465753424657534, 0.5990867579908675, 0.3415525114155251, 0.35251141552511417, 0.33515981735159817, 0.20182648401826483, 0.1771689497716895, 0.1817351598173516, 0.3315068493150685, 0.28127853881278536, 0.2447488584474886, 0.2191780821917808, 0.0410958904109589, 0.034703196347031964, 0.030136986301369864, 0.031050228310502283, 0.9287671232876712, 0.0319634703196347, 0.029223744292237442, 0.026484018264840183, 0.025570776255707764, 0.025570776255707764, 0.9461187214611873, 0.9315068493150684, 0.136986301369863, 0.154337899543379, 0.14977168949771688, 0.1187214611872146, 0.12694063926940638, 0.9315068493150684, 0.1223744292237443, 0.7506849315068493, 0.228310502283105, 0.07579908675799087, 0.049315068493150684, 0.04200913242009133, 0.897716894977169, 0.031050228310502283, 0.031050228310502283, 0.031050228310502283, 0.031050228310502283, 0.0319634703196347, 0.0319634703196347, 0.03287671232876712, 0.033789954337899546, 0.03287671232876712, 0.03287671232876712, 0.03287671232876712, 0.033789954337899546, 0.034703196347031964, 0.034703196347031964, 0.03561643835616438, 0.03744292237442922, 0.09406392694063927, 0.2420091324200913, 0.1095890410958904, 0.11050228310502283, 0.9342465753424658, 0.0684931506849315, 0.053881278538812784, 0.052968036529680365, 0.05570776255707763, 0.0547945205479452, 0.05570776255707763, 0.057534246575342465, 0.0593607305936073, 0.062100456621004566, 0.0639269406392694, 0.06301369863013699, 0.0639269406392694, 0.0684931506849315, 0.07397260273972603, 0.08036529680365297, 0.08127853881278539, 0.08401826484018265, 0.09315068493150686], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/THAP.gap.json b/pfam_gap_rates/THAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..929e19dcc2fa3f60d02826f5da72826f87c9c9ba
--- /dev/null
+++ b/pfam_gap_rates/THAP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/THUMP.gap.json b/pfam_gap_rates/THUMP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aec9b2cd1b82f858f5975615ac773ca35648533d
--- /dev/null
+++ b/pfam_gap_rates/THUMP.gap.json
@@ -0,0 +1 @@
+{"family": "THUMP", "n_seqs": 2265, "length": 165, "gap_rates": [0.9275938189845475, 0.9090507726269316, 0.9024282560706401, 0.897130242825607, 0.8874172185430463, 0.8931567328918323, 0.8878587196467991, 0.8529801324503311, 0.8375275938189846, 0.8229580573951435, 0.820309050772627, 0.7686534216335541, 0.7280353200883002, 0.6913907284768211, 0.6777041942604857, 0.6242825607064018, 0.5955849889624724, 0.5598233995584989, 0.5584988962472406, 0.5205298013245033, 0.47373068432671084, 0.44282560706401763, 0.4194260485651214, 0.4030905077262693, 0.3858719646799117, 0.37350993377483444, 0.3673289183222958, 0.36467991169977926, 0.39293598233995586, 0.365121412803532, 0.5011037527593819, 0.5143487858719646, 0.48432671081677703, 0.4295805739514349, 0.21324503311258278, 0.18498896247240618, 0.1695364238410596, 0.16070640176600443, 0.1509933774834437, 0.15717439293598234, 0.1368653421633554, 0.12759381898454747, 0.11699779249448124, 0.11125827814569536, 0.1055187637969095, 0.10286975717439294, 0.09359823399558499, 0.9090507726269316, 0.9227373068432672, 0.9456953642384106, 0.9487858719646799, 0.9275938189845475, 0.9112582781456954, 0.904635761589404, 0.09050772626931568, 0.0847682119205298, 0.08344370860927153, 0.08211920529801324, 0.08256070640176601, 0.08167770419426049, 0.08079470198675497, 0.07373068432671082, 0.5505518763796909, 0.3108167770419426, 0.0706401766004415, 0.06445916114790287, 0.06136865342163356, 0.060485651214128036, 0.060485651214128036, 0.05827814569536424, 0.05695364238410596, 0.05783664459161148, 0.05562913907284768, 0.053421633554083886, 0.052980132450331126, 0.04856512141280353, 0.047240618101545256, 0.045033112582781455, 0.04415011037527594, 0.04150110375275938, 0.04105960264900662, 0.038410596026490065, 0.03576158940397351, 0.038852097130242826, 0.03708609271523179, 0.037527593818984545, 0.05033112582781457, 0.05077262693156733, 0.10154525386313466, 0.1902869757174393, 0.2838852097130243, 0.8746136865342163, 0.9337748344370861, 0.897130242825607, 0.8247240618101546, 0.004856512141280353, 0.004415011037527594, 0.003973509933774834, 0.0030905077262693157, 0.0030905077262693157, 0.003532008830022075, 0.003532008830022075, 0.003532008830022075, 0.006622516556291391, 0.005739514348785872, 0.005298013245033113, 0.017218543046357615, 0.3805739514348786, 0.7456953642384105, 0.9470198675496688, 0.7527593818984547, 0.7324503311258278, 0.004856512141280353, 0.003532008830022075, 0.003532008830022075, 0.0030905077262693157, 0.0026490066225165563, 0.0026490066225165563, 0.0026490066225165563, 0.0026490066225165563, 0.0026490066225165563, 0.0026490066225165563, 0.0026490066225165563, 0.0026490066225165563, 0.0026490066225165563, 0.0026490066225165563, 0.003532008830022075, 0.003532008830022075, 0.004415011037527594, 0.045916114790286976, 0.04326710816777042, 0.027373068432671083, 0.5858719646799116, 0.8247240618101546, 0.9390728476821192, 0.8335540838852097, 0.8101545253863135, 0.2763796909492274, 0.10242825607064018, 0.07108167770419425, 0.040176600441501106, 0.04370860927152318, 0.046799116997792496, 0.04768211920529802, 0.04812362030905077, 0.05033112582781457, 0.052538631346578366, 0.052097130242825605, 0.052097130242825605, 0.052980132450331126, 0.053421633554083886, 0.053863134657836646, 0.0565121412803532, 0.060044150110375276, 0.06622516556291391, 0.07858719646799117, 0.1262693156732892, 0.14083885209713023, 0.1293598233995585, 0.14437086092715232, 0.15584988962472407, 0.21368653421633554, 0.3456953642384106, 0.48830022075055185, 0.871523178807947], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TIC20.gap.json b/pfam_gap_rates/TIC20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e096a10476a1d939d843989e9720a43ff5978dd
--- /dev/null
+++ b/pfam_gap_rates/TIC20.gap.json
@@ -0,0 +1 @@
+{"family": "TIC20", "n_seqs": 218, "length": 187, "gap_rates": [0.9357798165137615, 0.8853211009174312, 0.8577981651376146, 0.8165137614678899, 0.8027522935779816, 0.7981651376146789, 0.7798165137614679, 0.7935779816513762, 0.7752293577981652, 0.7660550458715596, 0.8394495412844036, 0.7752293577981652, 0.7568807339449541, 0.7339449541284404, 0.6972477064220184, 0.6926605504587156, 0.6926605504587156, 0.6880733944954128, 0.6834862385321101, 0.6834862385321101, 0.6743119266055045, 0.7155963302752294, 0.7155963302752294, 0.7110091743119266, 0.7018348623853211, 0.6880733944954128, 0.6697247706422018, 0.6467889908256881, 0.6330275229357798, 0.6146788990825688, 0.5825688073394495, 0.573394495412844, 0.5504587155963303, 0.13761467889908258, 0.0871559633027523, 0.0871559633027523, 0.0871559633027523, 0.0779816513761468, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.14678899082568808, 0.15137614678899083, 0.14678899082568808, 0.14678899082568808, 0.08256880733944955, 0.07339449541284404, 0.0779816513761468, 0.08256880733944955, 0.0963302752293578, 0.6605504587155964, 0.6284403669724771, 0.6055045871559633, 0.5963302752293578, 0.6009174311926605, 0.5871559633027523, 0.0963302752293578, 0.08256880733944955, 0.07339449541284404, 0.07339449541284404, 0.0871559633027523, 0.06880733944954129, 0.16972477064220184, 0.2889908256880734, 0.2889908256880734, 0.29357798165137616, 0.05963302752293578, 0.05504587155963303, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.05045871559633028, 0.045871559633027525, 0.03669724770642202, 0.03669724770642202, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.05504587155963303, 0.40825688073394495, 0.9036697247706422, 0.3486238532110092, 0.045871559633027525, 0.03669724770642202, 0.04128440366972477, 0.03669724770642202, 0.03211009174311927, 0.03211009174311927, 0.03211009174311927, 0.03211009174311927, 0.027522935779816515, 0.022935779816513763, 0.022935779816513763, 0.027522935779816515, 0.045871559633027525, 0.05963302752293578, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.027522935779816515, 0.01834862385321101, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.9174311926605505, 0.5504587155963303, 0.027522935779816515, 0.027522935779816515, 0.04128440366972477, 0.045871559633027525, 0.045871559633027525, 0.03211009174311927, 0.03669724770642202, 0.04128440366972477, 0.05963302752293578, 0.03669724770642202, 0.03669724770642202, 0.9220183486238532, 0.8211009174311926, 0.05504587155963303, 0.05504587155963303, 0.03669724770642202, 0.045871559633027525, 0.05963302752293578, 0.06422018348623854, 0.06880733944954129, 0.06422018348623854, 0.05963302752293578, 0.04128440366972477, 0.03669724770642202, 0.03211009174311927, 0.03211009174311927, 0.04128440366972477, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03211009174311927, 0.03211009174311927, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.04128440366972477, 0.03669724770642202, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.045871559633027525, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.9357798165137615, 0.05045871559633028, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05963302752293578, 0.0779816513761468, 0.08256880733944955, 0.10091743119266056, 0.3486238532110092], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TIG.gap.json b/pfam_gap_rates/TIG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9977c69b19deb510c9cfb34443dca3d76afcbf6a
--- /dev/null
+++ b/pfam_gap_rates/TIG.gap.json
@@ -0,0 +1 @@
+{"family": "TIG", "n_seqs": 5000, "length": 107, "gap_rates": [0.4432, 0.3274, 0.2052, 0.1798, 0.1488, 0.1278, 0.1154, 0.1474, 0.125, 0.0998, 0.0758, 0.0626, 0.0504, 0.241, 0.2356, 0.0206, 0.0146, 0.0092, 0.005, 0.004, 0.0036, 0.0034, 0.005, 0.0064, 0.0094, 0.002, 0.7834, 0.879, 0.925, 0.946, 0.9408, 0.8986, 0.8506, 0.6742, 0.464, 0.2946, 0.2252, 0.0076, 0.0036, 0.004, 0.004, 0.0042, 0.0032, 0.0032, 0.0038, 0.0042, 0.005, 0.005, 0.0054, 0.0064, 0.012, 0.012, 0.0134, 0.4826, 0.8358, 0.9304, 0.9492, 0.905, 0.7432, 0.0256, 0.0134, 0.013, 0.0132, 0.0138, 0.0134, 0.0122, 0.0132, 0.0144, 0.015, 0.0154, 0.0174, 0.0192, 0.0234, 0.0292, 0.7852, 0.8788, 0.9376, 0.9142, 0.8238, 0.616, 0.1376, 0.0848, 0.8736, 0.0932, 0.0966, 0.1042, 0.1078, 0.1182, 0.1242, 0.1388, 0.1596, 0.1738, 0.1914, 0.9256, 0.8158, 0.5828, 0.4536, 0.405, 0.4202, 0.441, 0.472, 0.5034, 0.53, 0.5556, 0.575, 0.6302, 0.6822], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TIR-like.gap.json b/pfam_gap_rates/TIR-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c31d80aaf2caefd59a86ff7815c14cc6663fd16
--- /dev/null
+++ b/pfam_gap_rates/TIR-like.gap.json
@@ -0,0 +1 @@
+{"family": "TIR-like", "n_seqs": 122, "length": 147, "gap_rates": [0.319672131147541, 0.16393442622950818, 0.14754098360655737, 0.13934426229508196, 0.13114754098360656, 0.13114754098360656, 0.13114754098360656, 0.6475409836065574, 0.13114754098360656, 0.12295081967213115, 0.13114754098360656, 0.11475409836065574, 0.11475409836065574, 0.10655737704918032, 0.19672131147540983, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.09836065573770492, 0.08196721311475409, 0.08196721311475409, 0.3442622950819672, 0.8934426229508197, 0.09836065573770492, 0.09836065573770492, 0.9180327868852459, 0.08196721311475409, 0.07377049180327869, 0.07377049180327869, 0.07377049180327869, 0.05737704918032787, 0.05737704918032787, 0.06557377049180328, 0.05737704918032787, 0.9180327868852459, 0.9180327868852459, 0.8934426229508197, 0.07377049180327869, 0.07377049180327869, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.6229508196721312, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.20491803278688525, 0.05737704918032787, 0.04918032786885246, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.07377049180327869, 0.07377049180327869, 0.06557377049180328, 0.05737704918032787, 0.05737704918032787, 0.04918032786885246, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.06557377049180328, 0.22131147540983606, 0.20491803278688525, 0.18032786885245902, 0.5573770491803278, 0.8278688524590164, 0.8688524590163934, 0.9180327868852459, 0.9426229508196722, 0.9426229508196722, 0.9344262295081968, 0.8934426229508197, 0.860655737704918, 0.7131147540983607, 0.5245901639344263, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.04918032786885246, 0.040983606557377046, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.03278688524590164, 0.09836065573770492, 0.6885245901639344, 0.8852459016393442, 0.9098360655737705, 0.9180327868852459, 0.9262295081967213, 0.9262295081967213, 0.9262295081967213, 0.9180327868852459, 0.9180327868852459, 0.8934426229508197, 0.860655737704918, 0.6721311475409836, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.07377049180327869, 0.07377049180327869, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.08196721311475409, 0.09016393442622951, 0.09016393442622951, 0.10655737704918032, 0.12295081967213115, 0.13114754098360656, 0.1557377049180328, 0.36885245901639346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM164.gap.json b/pfam_gap_rates/TMEM164.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28e4511c57b9a77790e23ae209bc6363c0f47243
--- /dev/null
+++ b/pfam_gap_rates/TMEM164.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TOBE_3.gap.json b/pfam_gap_rates/TOBE_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6605e9cba341561e414a3d61dfa286773025ca3
--- /dev/null
+++ b/pfam_gap_rates/TOBE_3.gap.json
@@ -0,0 +1 @@
+{"family": "TOBE_3", "n_seqs": 244, "length": 67, "gap_rates": [0.9221311475409836, 0.5327868852459017, 0.35655737704918034, 0.20081967213114754, 0.1680327868852459, 0.11885245901639344, 0.09016393442622951, 0.05327868852459016, 0.012295081967213115, 0.012295081967213115, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.06557377049180328, 0.045081967213114756, 0.036885245901639344, 0.9180327868852459, 0.7745901639344263, 0.12295081967213115, 0.012295081967213115, 0.020491803278688523, 0.004098360655737705, 0.8934426229508197, 0.9180327868852459, 0.930327868852459, 0.9057377049180327, 0.8524590163934426, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.1721311475409836, 0.13114754098360656, 0.12704918032786885, 0.12295081967213115, 0.01639344262295082, 0.012295081967213115, 0.012295081967213115, 0.01639344262295082, 0.9262295081967213, 0.01639344262295082, 0.020491803278688523, 0.020491803278688523, 0.020491803278688523, 0.02459016393442623, 0.02459016393442623, 0.05737704918032787, 0.11475409836065574, 0.3729508196721312], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPD.gap.json b/pfam_gap_rates/TPD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0098cfbca056b2aa5e559a106510254211ea8e77
--- /dev/null
+++ b/pfam_gap_rates/TPD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TPP_enzyme_M_2.gap.json b/pfam_gap_rates/TPP_enzyme_M_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..077be570b141fdde46d227dda8c0c1e826f0178f
--- /dev/null
+++ b/pfam_gap_rates/TPP_enzyme_M_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_8.gap.json b/pfam_gap_rates/TPR_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c486cb6a0368c0116df07bbefb35b1a63d0f246a
--- /dev/null
+++ b/pfam_gap_rates/TPR_8.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_8", "n_seqs": 5000, "length": 34, "gap_rates": [0.8508, 0.5014, 0.2986, 0.2, 0.1438, 0.1004, 0.058, 0.0362, 0.0318, 0.0276, 0.0206, 0.0148, 0.0108, 0.0076, 0.005, 0.0026, 0.0008, 0.0002, 0.0002, 0.0, 0.0004, 0.0004, 0.0014, 0.0032, 0.0086, 0.0198, 0.0348, 0.0672, 0.1208, 0.1838, 0.2454, 0.3214, 0.4826, 0.7766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_MLP1_2.gap.json b/pfam_gap_rates/TPR_MLP1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d60e0afb2b2e5b893ee4dcb61884309a5f5f09f
--- /dev/null
+++ b/pfam_gap_rates/TPR_MLP1_2.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_MLP1_2", "n_seqs": 224, "length": 129, "gap_rates": [0.9419642857142857, 0.21875, 0.12946428571428573, 0.09821428571428571, 0.08928571428571429, 0.07142857142857142, 0.0625, 0.05357142857142857, 0.044642857142857144, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.026785714285714284, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.03125, 0.03125, 0.026785714285714284, 0.026785714285714284, 0.013392857142857142, 0.013392857142857142, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.017857142857142856, 0.013392857142857142, 0.013392857142857142, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.03571428571428571, 0.03125, 0.03125, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.04017857142857143, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.07589285714285714, 0.11607142857142858, 0.5223214285714286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TP_methylase.gap.json b/pfam_gap_rates/TP_methylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52471d0833e08df5679b48d8de1acf8433d4be04
--- /dev/null
+++ b/pfam_gap_rates/TP_methylase.gap.json
@@ -0,0 +1 @@
+{"family": "TP_methylase", "n_seqs": 5000, "length": 248, "gap_rates": [0.497, 0.1288, 0.0984, 0.0728, 0.0688, 0.065, 0.0608, 0.0604, 0.0594, 0.068, 0.0586, 0.0602, 0.0566, 0.0554, 0.045, 0.0438, 0.0426, 0.0416, 0.0394, 0.0378, 0.0368, 0.0366, 0.0354, 0.0348, 0.0338, 0.0336, 0.0336, 0.0336, 0.0334, 0.0336, 0.0352, 0.0346, 0.036, 0.523, 0.085, 0.905, 0.9346, 0.9418, 0.9262, 0.836, 0.0404, 0.0354, 0.034, 0.0328, 0.0328, 0.0704, 0.0828, 0.1128, 0.1632, 0.262, 0.3662, 0.569, 0.8104, 0.875, 0.9328, 0.9458, 0.941, 0.9152, 0.849, 0.781, 0.5644, 0.5398, 0.4718, 0.3972, 0.3292, 0.234, 0.1876, 0.1512, 0.1272, 0.1418, 0.112, 0.0744, 0.0572, 0.066, 0.061, 0.0418, 0.914, 0.9296, 0.8716, 0.0266, 0.0224, 0.031, 0.0254, 0.0232, 0.0208, 0.0222, 0.0242, 0.8802, 0.8402, 0.0164, 0.0152, 0.0138, 0.0146, 0.013, 0.013, 0.0436, 0.0716, 0.0412, 0.0102, 0.0096, 0.0094, 0.0096, 0.0096, 0.7332, 0.0094, 0.0096, 0.0102, 0.0104, 0.0106, 0.0102, 0.01, 0.0106, 0.0108, 0.0132, 0.0134, 0.0134, 0.0168, 0.0196, 0.1222, 0.0842, 0.0242, 0.0184, 0.0204, 0.7114, 0.7166, 0.1328, 0.117, 0.0978, 0.0766, 0.0138, 0.0122, 0.0122, 0.0124, 0.0126, 0.0126, 0.0148, 0.0142, 0.0148, 0.0156, 0.016, 0.016, 0.0168, 0.0208, 0.0208, 0.0222, 0.0236, 0.0164, 0.0174, 0.0166, 0.0164, 0.0164, 0.0584, 0.032, 0.0318, 0.0322, 0.0302, 0.0314, 0.0256, 0.0322, 0.0506, 0.5528, 0.7392, 0.946, 0.826, 0.6888, 0.5004, 0.4698, 0.2574, 0.1694, 0.261, 0.1834, 0.2184, 0.1712, 0.0734, 0.0628, 0.0456, 0.0224, 0.023, 0.0412, 0.0412, 0.068, 0.0714, 0.0708, 0.1812, 0.9428, 0.9498, 0.9474, 0.923, 0.1284, 0.024, 0.0228, 0.0218, 0.0218, 0.0218, 0.0218, 0.0438, 0.0638, 0.0634, 0.0642, 0.8676, 0.0568, 0.8696, 0.8846, 0.8948, 0.8768, 0.8484, 0.0428, 0.0418, 0.0378, 0.0362, 0.0358, 0.0348, 0.0348, 0.0292, 0.0412, 0.0436, 0.0378, 0.7182, 0.4968, 0.2652, 0.0824, 0.2684, 0.0798, 0.1804, 0.0336, 0.0334, 0.0334, 0.0334, 0.0336, 0.0342, 0.035, 0.0352, 0.0366, 0.0378, 0.0404, 0.0424, 0.0452, 0.0476, 0.0546, 0.0676, 0.119, 0.1422, 0.1614, 0.1858, 0.2142, 0.2818, 0.3962, 0.9194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TRAM_LAG1_CLN8.gap.json b/pfam_gap_rates/TRAM_LAG1_CLN8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..810412f7eec8b9826685ea9d77423aeada5b4dc0
--- /dev/null
+++ b/pfam_gap_rates/TRAM_LAG1_CLN8.gap.json
@@ -0,0 +1 @@
+{"family": "TRAM_LAG1_CLN8", "n_seqs": 1874, "length": 262, "gap_rates": [0.4167556029882604, 0.31003201707577377, 0.2641408751334045, 0.2198505869797225, 0.19637139807897544, 0.17876200640341516, 0.16862326574172892, 0.1622198505869797, 0.15581643543223053, 0.1552828175026681, 0.15314834578441835, 0.15154749199573106, 0.14994663820704376, 0.1456776947705443, 0.14087513340448238, 0.13820704375667023, 0.13660618996798293, 0.1344717182497332, 0.13340448239060831, 0.1328708644610459, 0.13127001067235858, 0.13127001067235858, 0.12966915688367128, 0.13127001067235858, 0.13020277481323372, 0.13020277481323372, 0.12700106723585913, 0.5144076840981857, 0.5437566702241196, 0.5789754535752402, 0.8980789754535753, 0.9348986125933831, 0.9477054429028815, 0.9429028815368197, 0.9220917822838848, 0.8297758804695837, 0.571504802561366, 0.5218783351120597, 0.5032017075773746, 0.32924226254002137, 0.3073639274279616, 0.29722518676627535, 0.31856990394877266, 0.3447171824973319, 0.26093916755602986, 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\ No newline at end of file
diff --git a/pfam_gap_rates/TRAPP.gap.json b/pfam_gap_rates/TRAPP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbb31b8c6bbf210f0a70e793144f9d6b83d38a8f
--- /dev/null
+++ b/pfam_gap_rates/TRAPP.gap.json
@@ -0,0 +1 @@
+{"family": "TRAPP", "n_seqs": 1035, "length": 246, "gap_rates": [0.3884057971014493, 0.20483091787439614, 0.17777777777777778, 0.16521739130434782, 0.1565217391304348, 0.15458937198067632, 0.15072463768115943, 0.14396135265700483, 0.14202898550724638, 0.13719806763285025, 0.13623188405797101, 0.13526570048309178, 0.13429951690821257, 0.13333333333333333, 0.13140096618357489, 0.1294685990338164, 0.9478260869565217, 0.9062801932367149, 0.12657004830917876, 0.9458937198067633, 0.13429951690821257, 0.1285024154589372, 0.12753623188405797, 0.11497584541062802, 0.11207729468599034, 0.09082125603864734, 0.8019323671497585, 0.8115942028985508, 0.842512077294686, 0.8483091787439614, 0.851207729468599, 0.8541062801932368, 0.8666666666666667, 0.8792270531400966, 0.881159420289855, 0.8840579710144928, 0.8859903381642512, 0.8927536231884058, 0.8966183574879227, 0.8995169082125604, 0.9014492753623189, 0.9053140096618357, 0.9130434782608695, 0.9188405797101449, 0.9207729468599034, 0.923671497584541, 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\ No newline at end of file
diff --git a/pfam_gap_rates/TRI12.gap.json b/pfam_gap_rates/TRI12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9d9ec305ff6588d160df87d920f3872de87e1ae
--- /dev/null
+++ b/pfam_gap_rates/TRI12.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TRI5.gap.json b/pfam_gap_rates/TRI5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7ff501454ce4b988e145b959b929c76bab9aa4b
--- /dev/null
+++ b/pfam_gap_rates/TRI5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TRP_N.gap.json b/pfam_gap_rates/TRP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92071c559b6317b55f003c029d53f73af0c3a1ae
--- /dev/null
+++ b/pfam_gap_rates/TRP_N.gap.json
@@ -0,0 +1 @@
+{"family": "TRP_N", "n_seqs": 360, "length": 201, "gap_rates": [0.5027777777777778, 0.1638888888888889, 0.08333333333333333, 0.06388888888888888, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.05555555555555555, 0.05555555555555555, 0.044444444444444446, 0.06666666666666667, 0.06944444444444445, 0.8944444444444445, 0.044444444444444446, 0.8277777777777777, 0.8361111111111111, 0.8611111111111112, 0.8805555555555555, 0.8944444444444445, 0.8694444444444445, 0.8444444444444444, 0.8305555555555556, 0.8277777777777777, 0.044444444444444446, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.03888888888888889, 0.03888888888888889, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.8972222222222223, 0.8777777777777778, 0.03333333333333333, 0.06111111111111111, 0.04722222222222222, 0.03611111111111111, 0.03333333333333333, 0.8222222222222222, 0.8416666666666667, 0.9388888888888889, 0.8305555555555556, 0.8222222222222222, 0.030555555555555555, 0.030555555555555555, 0.027777777777777776, 0.025, 0.027777777777777776, 0.025, 0.025, 0.025, 0.022222222222222223, 0.8222222222222222, 0.8222222222222222, 0.8222222222222222, 0.8222222222222222, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8361111111111111, 0.8361111111111111, 0.8361111111111111, 0.8361111111111111, 0.8361111111111111, 0.8361111111111111, 0.8916666666666667, 0.9416666666666667, 0.9333333333333333, 0.8527777777777777, 0.8361111111111111, 0.8361111111111111, 0.8361111111111111, 0.8361111111111111, 0.8361111111111111, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8277777777777777, 0.8222222222222222, 0.8222222222222222, 0.8222222222222222, 0.8222222222222222, 0.022222222222222223, 0.03333333333333333, 0.027777777777777776, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.6166666666666667, 0.027777777777777776, 0.027777777777777776, 0.025, 0.025, 0.022222222222222223, 0.022222222222222223, 0.019444444444444445, 0.019444444444444445, 0.016666666666666666, 0.016666666666666666, 0.019444444444444445, 0.016666666666666666, 0.016666666666666666, 0.027777777777777776, 0.022222222222222223, 0.019444444444444445, 0.019444444444444445, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.019444444444444445, 0.022222222222222223, 0.03888888888888889, 0.7777777777777778, 0.6277777777777778, 0.019444444444444445, 0.013888888888888888, 0.011111111111111112, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.008333333333333333, 0.008333333333333333, 0.005555555555555556, 0.6777777777777778, 0.013888888888888888, 0.008333333333333333, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.11944444444444445, 0.125, 0.125, 0.13333333333333333, 0.13055555555555556, 0.9138888888888889, 0.08333333333333333, 0.08611111111111111, 0.14166666666666666, 0.09722222222222222, 0.08611111111111111, 0.016666666666666666, 0.013888888888888888, 0.019444444444444445, 0.019444444444444445, 0.019444444444444445, 0.011111111111111112, 0.8416666666666667, 0.8527777777777777, 0.8555555555555555, 0.8555555555555555, 0.8555555555555555, 0.8555555555555555, 0.8472222222222222, 0.8388888888888889, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.011111111111111112, 0.011111111111111112, 0.1638888888888889, 0.011111111111111112, 0.016666666666666666, 0.09444444444444444, 0.9222222222222223, 0.9361111111111111, 0.9, 0.03888888888888889, 0.025, 0.8944444444444445, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.016666666666666666, 0.027777777777777776, 0.027777777777777776, 0.4638888888888889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TSP_C.gap.json b/pfam_gap_rates/TSP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c920d29fd53eec9cd67bac577c0c754ea0c43dd2
--- /dev/null
+++ b/pfam_gap_rates/TSP_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TTKRSYEDQ.gap.json b/pfam_gap_rates/TTKRSYEDQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b1c8271dd61d03b2554bb581d662f29e9b3b85c
--- /dev/null
+++ b/pfam_gap_rates/TTKRSYEDQ.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TUG-UBL1.gap.json b/pfam_gap_rates/TUG-UBL1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07f803147337ea84d53370b65f10068e6af5f906
--- /dev/null
+++ b/pfam_gap_rates/TUG-UBL1.gap.json
@@ -0,0 +1 @@
+{"family": "TUG-UBL1", "n_seqs": 190, "length": 67, "gap_rates": [0.5368421052631579, 0.33157894736842103, 0.24736842105263157, 0.20526315789473684, 0.18421052631578946, 0.1631578947368421, 0.11052631578947368, 0.10526315789473684, 0.10526315789473684, 0.1, 0.1, 0.1, 0.1, 0.09473684210526316, 0.09473684210526316, 0.09473684210526316, 0.09473684210526316, 0.08947368421052632, 0.07368421052631578, 0.042105263157894736, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.010526315789473684, 0.010526315789473684, 0.8263157894736842, 0.021052631578947368, 0.021052631578947368, 0.9315789473684211, 0.021052631578947368, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.010526315789473684, 0.9315789473684211, 0.015789473684210527, 0.021052631578947368, 0.021052631578947368, 0.02631578947368421, 0.031578947368421054, 0.03684210526315789, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.06315789473684211, 0.06315789473684211, 0.06842105263157895, 0.1, 0.1368421052631579], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TYW3.gap.json b/pfam_gap_rates/TYW3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88c421bbe9e3ea11487cad3d639c69ce86fc6e22
--- /dev/null
+++ b/pfam_gap_rates/TYW3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tail_P2_I.gap.json b/pfam_gap_rates/Tail_P2_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c584a7dc2383c4ff1af6d3dcbdf8acdb293eae52
--- /dev/null
+++ b/pfam_gap_rates/Tail_P2_I.gap.json
@@ -0,0 +1 @@
+{"family": "Tail_P2_I", "n_seqs": 302, "length": 183, "gap_rates": [0.7483443708609272, 0.7185430463576159, 0.7152317880794702, 0.695364238410596, 0.6456953642384106, 0.6192052980132451, 0.5894039735099338, 0.5198675496688742, 0.4768211920529801, 0.41721854304635764, 0.3841059602649007, 0.3576158940397351, 0.3344370860927152, 0.9304635761589404, 0.3211920529801324, 0.304635761589404, 0.271523178807947, 0.25165562913907286, 0.24503311258278146, 0.23841059602649006, 0.23178807947019867, 0.1986754966887417, 0.34105960264900664, 0.32450331125827814, 0.304635761589404, 0.2781456953642384, 0.8609271523178808, 0.8874172185430463, 0.8178807947019867, 0.08609271523178808, 0.0728476821192053, 0.06622516556291391, 0.056291390728476824, 0.08609271523178808, 0.10927152317880795, 0.06291390728476821, 0.04966887417218543, 0.039735099337748346, 0.03642384105960265, 0.033112582781456956, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.8874172185430463, 0.8973509933774835, 0.8807947019867549, 0.026490066225165563, 0.2052980132450331, 0.19536423841059603, 0.059602649006622516, 0.033112582781456956, 0.026490066225165563, 0.03642384105960265, 0.04966887417218543, 0.04304635761589404, 0.019867549668874173, 0.016556291390728478, 0.009933774834437087, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.009933774834437087, 0.013245033112582781, 0.013245033112582781, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.013245033112582781, 0.019867549668874173, 0.8278145695364238, 0.08278145695364239, 0.056291390728476824, 0.08278145695364239, 0.09271523178807947, 0.9370860927152318, 0.10596026490066225, 0.7417218543046358, 0.10264900662251655, 0.09933774834437085, 0.09933774834437085, 0.10596026490066225, 0.10596026490066225, 0.609271523178808, 0.609271523178808, 0.6920529801324503, 0.7218543046357616, 0.7350993377483444, 0.7384105960264901, 0.7682119205298014, 0.7814569536423841, 0.7980132450331126, 0.8245033112582781, 0.8443708609271523, 0.847682119205298, 0.9403973509933775, 0.9470198675496688, 0.9470198675496688, 0.9105960264900662, 0.847682119205298, 0.8443708609271523, 0.8013245033112583, 0.7880794701986755, 0.7748344370860927, 0.7549668874172185, 0.7384105960264901, 0.7317880794701986, 0.7119205298013245, 0.6225165562913907, 0.609271523178808, 0.6059602649006622, 0.152317880794702, 0.2781456953642384, 0.25165562913907286, 0.26158940397350994, 0.7284768211920529, 0.9271523178807947, 0.6556291390728477, 0.3741721854304636, 0.4139072847682119, 0.3509933774834437, 0.347682119205298, 0.32450331125827814, 0.31456953642384106, 0.304635761589404, 0.2682119205298013, 0.2682119205298013, 0.27483443708609273, 0.27483443708609273, 0.2847682119205298, 0.3841059602649007, 0.40397350993377484, 0.8609271523178808, 0.39403973509933776, 0.3543046357615894, 0.9205298013245033, 0.9470198675496688, 0.890728476821192, 0.2980132450331126, 0.2947019867549669, 0.2913907284768212, 0.2947019867549669, 0.2980132450331126, 0.304635761589404, 0.3079470198675497, 0.31125827814569534, 0.31125827814569534, 0.9304635761589404, 0.31788079470198677, 0.3211920529801324, 0.32450331125827814, 0.32781456953642385, 0.33112582781456956, 0.33774834437086093, 0.34105960264900664, 0.3543046357615894, 0.3708609271523179, 0.3841059602649007, 0.4503311258278146, 0.6754966887417219], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TauE.gap.json b/pfam_gap_rates/TauE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e69fbe151d53cf75ad198fb708a6bb19f68f2235
--- /dev/null
+++ b/pfam_gap_rates/TauE.gap.json
@@ -0,0 +1 @@
+{"family": "TauE", "n_seqs": 5000, "length": 305, "gap_rates": [0.8634, 0.367, 0.2036, 0.1612, 0.1502, 0.144, 0.1432, 0.1386, 0.1382, 0.138, 0.1344, 0.1332, 0.1322, 0.1316, 0.1324, 0.1296, 0.3108, 0.1308, 0.128, 0.129, 0.1256, 0.1242, 0.1234, 0.1226, 0.1216, 0.1222, 0.1216, 0.1216, 0.1214, 0.5878, 0.1224, 0.905, 0.5518, 0.1416, 0.8556, 0.886, 0.8932, 0.9412, 0.913, 0.8884, 0.8692, 0.8436, 0.1246, 0.1208, 0.1196, 0.1196, 0.119, 0.1188, 0.1186, 0.1184, 0.1178, 0.1178, 0.1218, 0.1186, 0.1182, 0.117, 0.1192, 0.117, 0.1164, 0.1166, 0.1184, 0.126, 0.117, 0.1158, 0.1172, 0.1162, 0.117, 0.1196, 0.1606, 0.2764, 0.2532, 0.1196, 0.122, 0.1124, 0.112, 0.1104, 0.109, 0.107, 0.107, 0.1058, 0.1042, 0.1036, 0.1034, 0.1012, 0.0996, 0.0992, 0.0982, 0.0986, 0.098, 0.0974, 0.1006, 0.0978, 0.0978, 0.0974, 0.1094, 0.107, 0.0992, 0.0988, 0.0968, 0.0988, 0.1008, 0.9364, 0.9478, 0.917, 0.0922, 0.9468, 0.9482, 0.9492, 0.9472, 0.9468, 0.0908, 0.0866, 0.0806, 0.0778, 0.0746, 0.0744, 0.0744, 0.074, 0.0746, 0.0756, 0.0762, 0.0762, 0.0768, 0.0774, 0.0792, 0.083, 0.0942, 0.0996, 0.1112, 0.1214, 0.137, 0.2676, 0.617, 0.7084, 0.7562, 0.7904, 0.8138, 0.8302, 0.8396, 0.8514, 0.8652, 0.8754, 0.886, 0.8972, 0.9116, 0.9392, 0.9252, 0.9028, 0.8924, 0.8818, 0.87, 0.8584, 0.8452, 0.8348, 0.8226, 0.8038, 0.7746, 0.7306, 0.6654, 0.5902, 0.2768, 0.4856, 0.4762, 0.358, 0.8176, 0.9482, 0.9142, 0.7672, 0.427, 0.3214, 0.2302, 0.169, 0.1444, 0.1348, 0.1308, 0.1268, 0.126, 0.2016, 0.1474, 0.1364, 0.1234, 0.1286, 0.1536, 0.1096, 0.1074, 0.8896, 0.0964, 0.0944, 0.0992, 0.0958, 0.0956, 0.096, 0.0964, 0.1102, 0.095, 0.097, 0.097, 0.187, 0.107, 0.1048, 0.155, 0.1314, 0.1178, 0.0984, 0.096, 0.1016, 0.1042, 0.1692, 0.2774, 0.1044, 0.9478, 0.9192, 0.0962, 0.0966, 0.0944, 0.094, 0.0942, 0.0952, 0.095, 0.0948, 0.0946, 0.0948, 0.0946, 0.0946, 0.0952, 0.0948, 0.0966, 0.096, 0.0958, 0.0984, 0.0964, 0.0958, 0.0974, 0.0968, 0.0968, 0.0962, 0.0962, 0.0978, 0.1028, 0.099, 0.8052, 0.8652, 0.8888, 0.9002, 0.9184, 0.932, 0.9254, 0.9136, 0.8936, 0.8766, 0.829, 0.7232, 0.1024, 0.1016, 0.101, 0.1058, 0.1018, 0.0988, 0.0992, 0.1028, 0.102, 0.101, 0.099, 0.8522, 0.8654, 0.8382, 0.0988, 0.0988, 0.0988, 0.099, 0.099, 0.099, 0.099, 0.099, 0.0992, 0.0994, 0.0994, 0.0998, 0.1, 0.1002, 0.1002, 0.1006, 0.1012, 0.101, 0.1026, 0.102, 0.1024, 0.1152, 0.1044, 0.104, 0.1038, 0.1038, 0.1042, 0.1046, 0.105, 0.1056, 0.1054, 0.1104, 0.1152, 0.1244, 0.1414, 0.1728, 0.235, 0.3962, 0.6626], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tcp10_C.gap.json b/pfam_gap_rates/Tcp10_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a9138eb016246b10753dd68fc1a4ad8581fa2d0
--- /dev/null
+++ b/pfam_gap_rates/Tcp10_C.gap.json
@@ -0,0 +1 @@
+{"family": "Tcp10_C", "n_seqs": 162, "length": 178, "gap_rates": [0.6296296296296297, 0.5123456790123457, 0.3271604938271605, 0.2345679012345679, 0.21604938271604937, 0.20987654320987653, 0.19753086419753085, 0.18518518518518517, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.17901234567901234, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16049382716049382, 0.16049382716049382, 0.1728395061728395, 0.1728395061728395, 0.16666666666666666, 0.1728395061728395, 0.16666666666666666, 0.16666666666666666, 0.19753086419753085, 0.2716049382716049, 0.25925925925925924, 0.1728395061728395, 0.14814814814814814, 0.12962962962962962, 0.12962962962962962, 0.12345679012345678, 0.12345679012345678, 0.12345679012345678, 0.12345679012345678, 0.12345679012345678, 0.12962962962962962, 0.12345679012345678, 0.12962962962962962, 0.12345679012345678, 0.13580246913580246, 0.8765432098765432, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.09259259259259259, 0.9444444444444444, 0.08024691358024691, 0.08641975308641975, 0.09259259259259259, 0.08641975308641975, 0.09259259259259259, 0.08641975308641975, 0.09259259259259259, 0.08641975308641975, 0.08024691358024691, 0.08024691358024691, 0.08641975308641975, 0.08024691358024691, 0.08024691358024691, 0.07407407407407407, 0.07407407407407407, 0.06790123456790123, 0.06790123456790123, 0.06790123456790123, 0.06790123456790123, 0.08641975308641975, 0.07407407407407407, 0.06790123456790123, 0.07407407407407407, 0.06790123456790123, 0.06172839506172839, 0.08024691358024691, 0.09876543209876543, 0.08641975308641975, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.08641975308641975, 0.08641975308641975, 0.08641975308641975, 0.08024691358024691, 0.08024691358024691, 0.08024691358024691, 0.08024691358024691, 0.08641975308641975, 0.08024691358024691, 0.09876543209876543, 0.09876543209876543, 0.09259259259259259, 0.09259259259259259, 0.09876543209876543, 0.1111111111111111, 0.1111111111111111, 0.16049382716049382, 0.12962962962962962, 0.12962962962962962, 0.1419753086419753, 0.13580246913580246, 0.16049382716049382, 0.1728395061728395, 0.1728395061728395, 0.19753086419753085, 0.20987654320987653, 0.21604938271604937, 0.2222222222222222, 0.24691358024691357, 0.25308641975308643, 0.25925925925925924, 0.25925925925925924, 0.2839506172839506, 0.2962962962962963, 0.30246913580246915, 0.2962962962962963, 0.30864197530864196, 0.32098765432098764, 0.3148148148148148, 0.30864197530864196, 0.30864197530864196, 0.30864197530864196, 0.32098765432098764, 0.3271604938271605, 0.3271604938271605, 0.3333333333333333, 0.35185185185185186, 0.35185185185185186, 0.3765432098765432, 0.4012345679012346, 0.42592592592592593, 0.4444444444444444, 0.46296296296296297, 0.46296296296296297, 0.46296296296296297, 0.46296296296296297, 0.4444444444444444, 0.4506172839506173, 0.4506172839506173, 0.4506172839506173, 0.4506172839506173, 0.4567901234567901, 0.4567901234567901, 0.4567901234567901, 0.46296296296296297, 0.46296296296296297, 0.46296296296296297, 0.46296296296296297, 0.4691358024691358, 0.47530864197530864, 0.48148148148148145, 0.48148148148148145, 0.48148148148148145, 0.49382716049382713, 0.49382716049382713, 0.49382716049382713, 0.5123456790123457, 0.5123456790123457, 0.5123456790123457, 0.5123456790123457, 0.5246913580246914, 0.5246913580246914, 0.5308641975308642, 0.5370370370370371, 0.5370370370370371, 0.5432098765432098, 0.5432098765432098, 0.5432098765432098, 0.5432098765432098, 0.5432098765432098, 0.5432098765432098, 0.5493827160493827, 0.5493827160493827, 0.5617283950617284, 0.5679012345679012, 0.5679012345679012, 0.7098765432098766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ten1_2.gap.json b/pfam_gap_rates/Ten1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..542a3a7931fbddf0df7a2847e22f509b2a266a3e
--- /dev/null
+++ b/pfam_gap_rates/Ten1_2.gap.json
@@ -0,0 +1 @@
+{"family": "Ten1_2", "n_seqs": 101, "length": 151, "gap_rates": [0.5148514851485149, 0.38613861386138615, 0.33663366336633666, 0.32673267326732675, 0.2871287128712871, 0.2376237623762376, 0.2376237623762376, 0.22772277227722773, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.6138613861386139, 0.9306930693069307, 0.900990099009901, 0.5742574257425742, 0.2079207920792079, 0.2079207920792079, 0.27722772277227725, 0.22772277227722773, 0.1782178217821782, 0.18811881188118812, 0.18811881188118812, 0.1782178217821782, 0.13861386138613863, 0.13861386138613863, 0.13861386138613863, 0.13861386138613863, 0.13861386138613863, 0.1188118811881188, 0.09900990099009901, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.039603960396039604, 0.04950495049504951, 0.04950495049504951, 0.039603960396039604, 0.04950495049504951, 0.04950495049504951, 0.039603960396039604, 0.039603960396039604, 0.04950495049504951, 0.039603960396039604, 0.04950495049504951, 0.9306930693069307, 0.693069306930693, 0.6831683168316832, 0.6534653465346535, 0.6534653465346535, 0.039603960396039604, 0.0297029702970297, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.8514851485148515, 0.019801980198019802, 0.0, 0.04950495049504951, 0.0, 0.0, 0.009900990099009901, 0.8613861386138614, 0.8712871287128713, 0.9306930693069307, 0.9306930693069307, 0.8811881188118812, 0.8712871287128713, 0.8514851485148515, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.8316831683168316, 0.6534653465346535, 0.15841584158415842, 0.07920792079207921, 0.07920792079207921, 0.0891089108910891, 0.0594059405940594, 0.8217821782178217, 0.8316831683168316, 0.8514851485148515, 0.8712871287128713, 0.8712871287128713, 0.8811881188118812, 0.8811881188118812, 0.8910891089108911, 0.9306930693069307, 0.9405940594059405, 0.9405940594059405, 0.9108910891089109, 0.8910891089108911, 0.8811881188118812, 0.8811881188118812, 0.8712871287128713, 0.8514851485148515, 0.8415841584158416, 0.8217821782178217, 0.8217821782178217, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.06930693069306931, 0.0891089108910891, 0.0891089108910891, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.12871287128712872, 0.13861386138613863, 0.16831683168316833, 0.1782178217821782, 0.25742574257425743, 0.3564356435643564, 0.7722772277227723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TerB.gap.json b/pfam_gap_rates/TerB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6213d7fe15d98419655921beb34c3facb868239a
--- /dev/null
+++ b/pfam_gap_rates/TerB.gap.json
@@ -0,0 +1 @@
+{"family": "TerB", "n_seqs": 1224, "length": 156, "gap_rates": [0.9264705882352942, 0.9093137254901961, 0.8954248366013072, 0.8872549019607843, 0.8594771241830066, 0.8178104575163399, 0.7933006535947712, 0.7736928104575164, 0.7393790849673203, 0.7091503267973857, 0.6756535947712419, 0.6535947712418301, 0.6258169934640523, 0.5849673202614379, 0.5718954248366013, 0.5343137254901961, 0.5212418300653595, 0.5138888888888888, 0.5163398692810458, 0.5955882352941176, 0.696078431372549, 0.5228758169934641, 0.8537581699346405, 0.9076797385620915, 0.6315359477124183, 0.35866013071895425, 0.2875816993464052, 0.18709150326797386, 0.1576797385620915, 0.14133986928104575, 0.125, 0.11029411764705882, 0.0988562091503268, 0.08333333333333333, 0.07598039215686274, 0.07107843137254902, 0.07026143790849673, 0.06454248366013073, 0.06372549019607843, 0.06209150326797386, 0.061274509803921566, 0.06045751633986928, 0.059640522875817, 0.06209150326797386, 0.059640522875817, 0.059640522875817, 0.059640522875817, 0.059640522875817, 0.059640522875817, 0.05800653594771242, 0.05800653594771242, 0.06209150326797386, 0.05718954248366013, 0.06290849673202614, 0.05718954248366013, 0.056372549019607844, 0.05555555555555555, 0.4011437908496732, 0.20669934640522875, 0.1968954248366013, 0.1830065359477124, 0.06535947712418301, 0.12009803921568628, 0.10049019607843138, 0.06944444444444445, 0.06454248366013073, 0.059640522875817, 0.05718954248366013, 0.056372549019607844, 0.05392156862745098, 0.05392156862745098, 0.05473856209150327, 0.05473856209150327, 0.05718954248366013, 0.05555555555555555, 0.058823529411764705, 0.06045751633986928, 0.06372549019607843, 0.06045751633986928, 0.06454248366013073, 0.05473856209150327, 0.7933006535947712, 0.8602941176470589, 0.886437908496732, 0.9035947712418301, 0.8995098039215687, 0.8709150326797386, 0.8308823529411765, 0.7671568627450981, 0.05718954248366013, 0.051470588235294115, 0.05228758169934641, 0.056372549019607844, 0.05310457516339869, 0.04738562091503268, 0.04493464052287582, 0.03839869281045752, 0.049019607843137254, 0.04493464052287582, 0.03676470588235294, 0.03594771241830065, 0.03431372549019608, 0.12009803921568628, 0.1650326797385621, 0.1454248366013072, 0.7124183006535948, 0.9477124183006536, 0.6870915032679739, 0.04084967320261438, 0.02042483660130719, 0.017973856209150325, 0.01715686274509804, 0.013071895424836602, 0.011437908496732025, 0.012254901960784314, 0.010620915032679739, 0.00980392156862745, 0.008169934640522876, 0.006535947712418301, 0.007352941176470588, 0.007352941176470588, 0.008169934640522876, 0.008986928104575163, 0.00980392156862745, 0.010620915032679739, 0.013071895424836602, 0.012254901960784314, 0.016339869281045753, 0.014705882352941176, 0.015522875816993464, 0.015522875816993464, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.018790849673202614, 0.018790849673202614, 0.018790849673202614, 0.0196078431372549, 0.021241830065359478, 0.027777777777777776, 0.035130718954248366, 0.03839869281045752, 0.04493464052287582, 0.04738562091503268, 0.056372549019607844, 0.0661764705882353, 0.07598039215686274, 0.09640522875816994, 0.15359477124183007, 0.20588235294117646, 0.2426470588235294, 0.3300653594771242, 0.42401960784313725, 0.5245098039215687, 0.6519607843137255, 0.863562091503268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TerB_C.gap.json b/pfam_gap_rates/TerB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ee9060d7c3322d4038356c7b189055be642b060
--- /dev/null
+++ b/pfam_gap_rates/TerB_C.gap.json
@@ -0,0 +1 @@
+{"family": "TerB_C", "n_seqs": 100, "length": 204, "gap_rates": [0.93, 0.79, 0.68, 0.62, 0.57, 0.54, 0.47, 0.44, 0.39, 0.35, 0.31, 0.27, 0.18, 0.13, 0.12, 0.12, 0.1, 0.1, 0.1, 0.09, 0.08, 0.08, 0.08, 0.08, 0.09, 0.09, 0.09, 0.09, 0.07, 0.07, 0.07, 0.07, 0.07, 0.07, 0.07, 0.07, 0.07, 0.07, 0.41, 0.38, 0.35, 0.07, 0.07, 0.07, 0.07, 0.35, 0.76, 0.8, 0.85, 0.89, 0.94, 0.95, 0.91, 0.87, 0.82, 0.79, 0.7, 0.59, 0.63, 0.62, 0.56, 0.38, 0.32, 0.27, 0.22, 0.2, 0.12, 0.1, 0.12, 0.1, 0.09, 0.1, 0.11, 0.11, 0.11, 0.11, 0.14, 0.14, 0.14, 0.22, 0.35, 0.5, 0.54, 0.59, 0.66, 0.63, 0.68, 0.51, 0.59, 0.63, 0.71, 0.73, 0.75, 0.76, 0.77, 0.8, 0.82, 0.83, 0.86, 0.9, 0.9, 0.91, 0.92, 0.92, 0.92, 0.93, 0.94, 0.95, 0.95, 0.93, 0.92, 0.92, 0.92, 0.92, 0.91, 0.9, 0.89, 0.84, 0.83, 0.8, 0.8, 0.77, 0.76, 0.74, 0.72, 0.67, 0.63, 0.57, 0.38, 0.04, 0.04, 0.04, 0.03, 0.03, 0.02, 0.02, 0.02, 0.02, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.95, 0.48, 0.31, 0.24, 0.19, 0.18, 0.07, 0.02, 0.02, 0.03, 0.02, 0.03, 0.03, 0.01, 0.01, 0.01, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.02, 0.02, 0.02, 0.95, 0.45, 0.02, 0.02, 0.07, 0.09, 0.09, 0.06, 0.06, 0.06, 0.06, 0.06, 0.08, 0.08, 0.12, 0.16, 0.28, 0.71], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TerC.gap.json b/pfam_gap_rates/TerC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..026bdb59606dd8511bcbdf2f1c0c187e7fd6f99b
--- /dev/null
+++ b/pfam_gap_rates/TerC.gap.json
@@ -0,0 +1 @@
+{"family": "TerC", "n_seqs": 2042, "length": 251, "gap_rates": [0.568560235063663, 0.12732615083251714, 0.03281096963761019, 0.031831537708129284, 0.030362389813907934, 0.029382957884427033, 0.029382957884427033, 0.029382957884427033, 0.02791380999020568, 0.02742409402546523, 0.02742409402546523, 0.02644466209598433, 0.02644466209598433, 0.02644466209598433, 0.02644466209598433, 0.02595494613124388, 0.02595494613124388, 0.02595494613124388, 0.02595494613124388, 0.02497551420176298, 0.023996082272282077, 0.023996082272282077, 0.023016650342801176, 0.022037218413320275, 0.6204701273261508, 0.618511263467189, 0.022037218413320275, 0.023016650342801176, 0.021547502448579822, 0.021057786483839373, 0.020078354554358472, 0.020078354554358472, 0.01860920666013712, 0.01909892262487757, 0.01909892262487757, 0.01811949069539667, 0.01811949069539667, 0.01860920666013712, 0.01860920666013712, 0.01909892262487757, 0.016160626836434867, 0.016160626836434867, 0.015670910871694418, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Tex_YqgF.gap.json b/pfam_gap_rates/Tex_YqgF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8b7dbd39e43f9779559e7edfed36ef993e7e195
--- /dev/null
+++ b/pfam_gap_rates/Tex_YqgF.gap.json
@@ -0,0 +1 @@
+{"family": "Tex_YqgF", "n_seqs": 1384, "length": 130, "gap_rates": [0.47326589595375723, 0.09320809248554913, 0.028901734104046242, 0.028179190751445087, 0.028179190751445087, 0.028179190751445087, 0.028179190751445087, 0.02745664739884393, 0.02745664739884393, 0.029624277456647398, 0.02745664739884393, 0.028179190751445087, 0.028901734104046242, 0.02745664739884393, 0.026734104046242775, 0.025289017341040464, 0.025289017341040464, 0.025289017341040464, 0.025289017341040464, 0.025289017341040464, 0.024566473988439308, 0.02601156069364162, 0.025289017341040464, 0.025289017341040464, 0.025289017341040464, 0.02384393063583815, 0.022398843930635837, 0.022398843930635837, 0.022398843930635837, 0.022398843930635837, 0.022398843930635837, 0.022398843930635837, 0.022398843930635837, 0.022398843930635837, 0.046242774566473986, 0.06213872832369942, 0.0657514450867052, 0.0657514450867052, 0.06502890173410404, 0.0476878612716763, 0.03829479768786127, 0.03395953757225433, 0.03106936416184971, 0.024566473988439308, 0.023121387283236993, 0.022398843930635837, 0.022398843930635837, 0.020953757225433526, 0.020953757225433526, 0.02023121387283237, 0.02023121387283237, 0.02023121387283237, 0.02023121387283237, 0.019508670520231215, 0.019508670520231215, 0.019508670520231215, 0.02023121387283237, 0.01878612716763006, 0.019508670520231215, 0.019508670520231215, 0.01878612716763006, 0.01878612716763006, 0.01878612716763006, 0.01878612716763006, 0.01878612716763006, 0.018063583815028903, 0.018063583815028903, 0.018063583815028903, 0.018063583815028903, 0.018063583815028903, 0.018063583815028903, 0.018063583815028903, 0.017341040462427744, 0.016618497109826588, 0.016618497109826588, 0.015173410404624277, 0.016618497109826588, 0.02023121387283237, 0.03251445086705202, 0.04190751445086705, 0.8359826589595376, 0.916907514450867, 0.8591040462427746, 0.5708092485549133, 0.09971098265895954, 0.13728323699421965, 0.04046242774566474, 0.020953757225433526, 0.017341040462427744, 0.015173410404624277, 0.014450867052023121, 0.013728323699421965, 0.01300578034682081, 0.012283236994219654, 0.011560693641618497, 0.011560693641618497, 0.01300578034682081, 0.014450867052023121, 0.014450867052023121, 0.015173410404624277, 0.015173410404624277, 0.015173410404624277, 0.015173410404624277, 0.015173410404624277, 0.014450867052023121, 0.014450867052023121, 0.014450867052023121, 0.015173410404624277, 0.015173410404624277, 0.015173410404624277, 0.015895953757225433, 0.015895953757225433, 0.015895953757225433, 0.015895953757225433, 0.015895953757225433, 0.015895953757225433, 0.016618497109826588, 0.016618497109826588, 0.016618497109826588, 0.016618497109826588, 0.016618497109826588, 0.016618497109826588, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.019508670520231215, 0.019508670520231215, 0.025289017341040464, 0.1856936416184971], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredoxin_2.gap.json b/pfam_gap_rates/Thioredoxin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c9032d6054a81ccba375969e229eb68323dde35
--- /dev/null
+++ b/pfam_gap_rates/Thioredoxin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredoxin_2", "n_seqs": 881, "length": 143, "gap_rates": [0.8320090805902384, 0.5312145289443814, 0.32122587968217936, 0.22474460839954596, 0.13280363223609534, 0.07150964812712826, 0.039727582292849034, 0.029511918274687854, 0.01362088535754824, 0.01362088535754824, 0.011350737797956867, 0.011350737797956867, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.012485811577752554, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.012485811577752554, 0.011350737797956867, 0.01021566401816118, 0.012485811577752554, 0.009080590238365494, 0.009080590238365494, 0.009080590238365494, 0.012485811577752554, 0.681044267877412, 0.8978433598183881, 0.6208853575482406, 0.0851305334846765, 0.05448354143019296, 0.0510783200908059, 0.06129398410896708, 0.05788876276958002, 0.053348467650397274, 0.4199772985244041, 0.4188422247446084, 0.4029511918274688, 0.4018161180476731, 0.3813847900113507, 0.6424517593643587, 0.699205448354143, 0.43132803632236094, 0.04880817253121453, 0.06696935300794551, 0.046538024971623154, 0.06242905788876277, 0.14074914869466515, 0.1191827468785471, 0.04086265607264472, 0.026106696935300794, 0.019296254256526674, 0.014755959137343927, 0.01362088535754824, 0.012485811577752554, 0.012485811577752554, 0.011350737797956867, 0.01021566401816118, 0.012485811577752554, 0.015891032917139614, 0.026106696935300794, 0.20090805902383654, 0.2633371169125993, 0.2133938706015891, 0.19182746878547105, 0.19182746878547105, 0.16912599318955732, 0.38251986379114644, 0.3995459704880817, 0.41316685584562995, 0.42338251986379116, 0.42565266742338254, 0.42905788876276957, 0.4358683314415437, 0.5732122587968218, 0.7377979568671964, 0.8683314415437003, 0.8967082860385925, 0.9409761634506243, 0.9466515323496028, 0.9080590238365494, 0.8842224744608399, 0.8127128263337117, 0.6526674233825198, 0.44948921679909193, 0.43246311010215666, 0.42905788876276957, 0.42565266742338254, 0.41430192962542567, 0.4097616345062429, 0.39727582292849034, 0.2213393870601589, 0.16004540295119182, 0.1282633371169126, 0.11010215664018161, 0.09194097616345062, 0.05448354143019296, 0.043132803632236094, 0.02383654937570942, 0.019296254256526674, 0.015891032917139614, 0.011350737797956867, 0.02043132803632236, 0.018161180476730987, 0.02043132803632236, 0.012485811577752554, 0.01362088535754824, 0.01362088535754824, 0.014755959137343927, 0.015891032917139614, 0.015891032917139614, 0.018161180476730987, 0.026106696935300794, 0.0340522133938706, 0.036322360953461974, 0.03745743473325766, 0.04086265607264472, 0.9160045402951191, 0.9489216799091941, 0.6311010215664018, 0.5664018161180476, 0.5550510783200908, 0.5629965947786606, 0.5629965947786606, 0.13280363223609534, 0.13507377979568672, 0.1373439273552781, 0.13961407491486946, 0.16345062429057888, 0.18047673098751418, 0.20317820658342792, 0.21679909194097616, 0.24858115777525538, 0.26220204313280365, 0.27809307604994327, 0.31441543700340524, 0.3711691259931896, 0.489216799091941, 0.6220204313280363], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredoxin_6.gap.json b/pfam_gap_rates/Thioredoxin_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13e3d497a4bb9f8d900d6a71d13e2f48e7e02d7b
--- /dev/null
+++ b/pfam_gap_rates/Thioredoxin_6.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredoxin_6", "n_seqs": 1226, "length": 218, "gap_rates": [0.6957585644371941, 0.6500815660685155, 0.5880913539967374, 0.5236541598694943, 0.4371941272430669, 0.4086460032626427, 0.37846655791190864, 0.35154975530179444, 0.3278955954323002, 0.300163132137031, 0.2822185970636215, 0.27895595432300163, 0.27161500815660683, 0.24225122349102773, 0.22593800978792822, 0.2226753670473083, 0.2169657422512235, 0.21207177814029363, 0.20880913539967375, 0.2128874388254486, 0.3931484502446982, 0.19086460032626426, 0.1729200652528548, 0.16068515497553018, 0.14437194127243066, 0.13784665579119088, 0.14192495921696574, 0.13376835236541598, 0.1468189233278956, 0.22104404567699837, 0.1598694942903752, 0.1500815660685155, 0.18107667210440456, 0.16476345840130505, 0.17128874388254486, 0.14355628058727568, 0.8588907014681892, 0.9241435562805873, 0.9143556280587276, 0.8230016313213703, 0.1402936378466558, 0.12969004893964112, 0.14600326264274063, 0.13213703099510604, 0.1598694942903752, 0.7455138662316476, 0.100326264274062, 0.0929853181076672, 0.09135399673735727, 0.09543230016313213, 0.11582381729200653, 0.08564437194127243, 0.08401305057096248, 0.8972267536704731, 0.9004893964110929, 0.9119086460032626, 0.9102773246329527, 0.898042414355628, 0.8972267536704731, 0.08156606851549755, 0.8964110929853181, 0.21533442088091354, 0.1598694942903752, 0.09216965742251224, 0.10848287112561175, 0.12561174551386622, 0.09053833605220228, 0.07748776508972267, 0.0701468189233279, 0.06933115823817292, 0.0799347471451876, 0.15089722675367048, 0.8646003262642741, 0.9445350734094616, 0.899673735725938, 0.7536704730831973, 0.5171288743882545, 0.17210440456769985, 0.06199021207177814, 0.052202283849918436, 0.0464926590538336, 0.044861337683523655, 0.04404567699836868, 0.040783034257748776, 0.03915171288743882, 0.037520391517128875, 0.03588907014681892, 0.0367047308319739, 0.03588907014681892, 0.03588907014681892, 0.03588907014681892, 0.03425774877650897, 0.03425774877650897, 0.02202283849918434, 0.022838499184339316, 0.02202283849918434, 0.02365415986949429, 0.026101141924959218, 0.026101141924959218, 0.024469820554649267, 0.03181076672104405, 0.02365415986949429, 0.9388254486133768, 0.02528548123980424, 0.026101141924959218, 0.024469820554649267, 0.03425774877650897, 0.030179445350734094, 0.02365415986949429, 0.021207177814029365, 0.021207177814029365, 0.10848287112561175, 0.0432300163132137, 0.37520391517128876, 0.10848287112561175, 0.026916802610114192, 0.02528548123980424, 0.02202283849918434, 0.02202283849918434, 0.9298531810766721, 0.02528548123980424, 0.1370309951060359, 0.2234910277324633, 0.12398042414355628, 0.06688417618270799, 0.05628058727569331, 0.03915171288743882, 0.033442088091353996, 0.9371941272430668, 0.9469820554649266, 0.933115823817292, 0.03262642740619902, 0.028548123980424143, 0.028548123980424143, 0.02936378466557912, 0.026916802610114192, 0.0464926590538336, 0.0399673735725938, 0.02936378466557912, 0.02773246329526917, 0.02773246329526917, 0.02773246329526917, 0.033442088091353996, 0.028548123980424143, 0.028548123980424143, 0.9404567699836868, 0.9437194127243067, 0.9176182707993474, 0.026916802610114192, 0.02936378466557912, 0.08319738988580751, 0.9208809135399674, 0.06688417618270799, 0.03262642740619902, 0.033442088091353996, 0.033442088091353996, 0.03507340946166395, 0.03588907014681892, 0.03507340946166395, 0.0399673735725938, 0.0432300163132137, 0.763458401305057, 0.7292006525285482, 0.13213703099510604, 0.08727569331158239, 0.08156606851549755, 0.044861337683523655, 0.044861337683523655, 0.0464926590538336, 0.04812398042414356, 0.9274061990212071, 0.04812398042414356, 0.04730831973898858, 0.05057096247960848, 0.049755301794453505, 0.053833605220228384, 0.20880913539967375, 0.932300163132137, 0.8752039151712887, 0.13376835236541598, 0.0636215334420881, 0.0636215334420881, 0.06525285481239804, 0.06525285481239804, 0.06525285481239804, 0.06606851549755302, 0.22838499184339314, 0.07096247960848287, 0.07422512234910278, 0.2822185970636215, 0.1566068515497553, 0.11419249592169657, 0.09461663947797716, 0.10522022838499184, 0.1533442088091354, 0.17455138662316477, 0.14518760195758565, 0.18433931484502447, 0.16639477977161501, 0.9363784665579119, 0.5725938009787929, 0.1533442088091354, 0.15905383360522024, 0.9396411092985318, 0.16884176182707994, 0.17455138662316477, 0.18107667210440456, 0.18923327895595432, 0.9469820554649266, 0.200652528548124, 0.20473083197389885, 0.20473083197389885, 0.20636215334420882, 0.21859706362153344, 0.22920065252854813, 0.2740619902120718, 0.41190864600326266, 0.6867862969004894], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tma16.gap.json b/pfam_gap_rates/Tma16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..610c1125d5ae3d32fd5e321c0193085ac472d91a
--- /dev/null
+++ b/pfam_gap_rates/Tma16.gap.json
@@ -0,0 +1 @@
+{"family": "Tma16", "n_seqs": 201, "length": 159, "gap_rates": [0.8756218905472637, 0.4626865671641791, 0.1791044776119403, 0.11940298507462686, 0.10945273631840796, 0.10945273631840796, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.09950248756218906, 0.0945273631840796, 0.0945273631840796, 0.0945273631840796, 0.0945273631840796, 0.0945273631840796, 0.08955223880597014, 0.08955223880597014, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.07960199004975124, 0.07960199004975124, 0.07462686567164178, 0.07462686567164178, 0.0845771144278607, 0.0845771144278607, 0.06965174129353234, 0.06965174129353234, 0.07960199004975124, 0.06965174129353234, 0.06965174129353234, 0.07960199004975124, 0.07960199004975124, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.07960199004975124, 0.06965174129353234, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.8109452736318408, 0.9154228855721394, 0.8805970149253731, 0.5920398009950248, 0.15422885572139303, 0.06965174129353234, 0.06965174129353234, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.8706467661691543, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.04477611940298507, 0.04477611940298507, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.746268656716418, 0.7711442786069652, 0.7611940298507462, 0.736318407960199, 0.0945273631840796, 0.1044776119402985, 0.0945273631840796, 0.07960199004975124, 0.06965174129353234, 0.04975124378109453, 0.04975124378109453, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04975124378109453, 0.04975124378109453, 0.04477611940298507, 0.04975124378109453, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.6766169154228856, 0.04477611940298507, 0.04477611940298507, 0.05970149253731343, 0.06467661691542288, 0.07462686567164178, 0.07462686567164178, 0.06467661691542288, 0.05970149253731343, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.07960199004975124, 0.07960199004975124, 0.07960199004975124, 0.9402985074626866, 0.9402985074626866, 0.8606965174129353, 0.0845771144278607, 0.0845771144278607, 0.0945273631840796, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.0945273631840796, 0.0945273631840796, 0.09950248756218906, 0.10945273631840796, 0.11442786069651742, 0.11940298507462686, 0.12935323383084577, 0.13432835820895522, 0.208955223880597, 0.7562189054726368], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tmemb_170.gap.json b/pfam_gap_rates/Tmemb_170.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48147eed33358032fd1608f0482351bf0487ede7
--- /dev/null
+++ b/pfam_gap_rates/Tmemb_170.gap.json
@@ -0,0 +1 @@
+{"family": "Tmemb_170", "n_seqs": 186, "length": 113, "gap_rates": [0.9301075268817204, 0.27419354838709675, 0.21505376344086022, 0.1774193548387097, 0.16129032258064516, 0.14516129032258066, 0.12365591397849462, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0913978494623656, 0.08602150537634409, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08602150537634409, 0.08064516129032258, 0.7580645161290323, 0.7580645161290323, 0.9354838709677419, 0.946236559139785, 0.8279569892473119, 0.7580645161290323, 0.6505376344086021, 0.06989247311827956, 0.05913978494623656, 0.05913978494623656, 0.04838709677419355, 0.03763440860215054, 0.03763440860215054, 0.043010752688172046, 0.03225806451612903, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.026881720430107527, 0.03763440860215054, 0.03225806451612903, 0.03225806451612903, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.03225806451612903, 0.04838709677419355, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06989247311827956, 0.06989247311827956, 0.06989247311827956, 0.06989247311827956, 0.06989247311827956, 0.06989247311827956, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08602150537634409, 0.08602150537634409, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.10215053763440861, 0.11290322580645161, 0.41935483870967744, 0.25268817204301075, 0.2956989247311828, 0.3064516129032258, 0.3978494623655914, 0.41935483870967744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TnpV.gap.json b/pfam_gap_rates/TnpV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1adc1b5e00c141f4afc6f6756bca97f5b2308b27
--- /dev/null
+++ b/pfam_gap_rates/TnpV.gap.json
@@ -0,0 +1 @@
+{"family": "TnpV", "n_seqs": 325, "length": 112, "gap_rates": [0.4461538461538462, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.15692307692307692, 0.15384615384615385, 0.15384615384615385, 0.15692307692307692, 0.15384615384615385, 0.15076923076923077, 0.16307692307692306, 0.15076923076923077, 0.15076923076923077, 0.14153846153846153, 0.14153846153846153, 0.7907692307692308, 0.36923076923076925, 0.17846153846153845, 0.13538461538461538, 0.12923076923076923, 0.12923076923076923, 0.1076923076923077, 0.11076923076923077, 0.11076923076923077, 0.11076923076923077, 0.11076923076923077, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.09538461538461539, 0.09538461538461539, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.08923076923076922, 0.08615384615384615, 0.08615384615384615, 0.08615384615384615, 0.08307692307692308, 0.08307692307692308, 0.08615384615384615, 0.08615384615384615, 0.07692307692307693, 0.07384615384615385, 0.06461538461538462, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06461538461538462, 0.06461538461538462, 0.06461538461538462, 0.06153846153846154, 0.06153846153846154, 0.06461538461538462, 0.06769230769230769, 0.06769230769230769, 0.06153846153846154, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.06153846153846154, 0.05846153846153846, 0.055384615384615386, 0.052307692307692305, 0.04923076923076923, 0.055384615384615386, 0.055384615384615386, 0.055384615384615386, 0.06461538461538462, 0.06461538461538462, 0.06153846153846154, 0.05846153846153846, 0.06153846153846154, 0.05846153846153846, 0.08, 0.10153846153846154, 0.09846153846153846, 0.11384615384615385, 0.09846153846153846, 0.11384615384615385, 0.10461538461538461, 0.08, 0.08, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08923076923076922, 0.08923076923076922, 0.08923076923076922, 0.09538461538461539, 0.09846153846153846, 0.08923076923076922, 0.09538461538461539, 0.09538461538461539, 0.09538461538461539, 0.09846153846153846, 0.09846153846153846, 0.10461538461538461, 0.10461538461538461, 0.11384615384615385, 0.11384615384615385, 0.11384615384615385, 0.11692307692307692, 0.12, 0.12307692307692308, 0.13230769230769232, 0.13846153846153847, 0.14153846153846153, 0.16307692307692306], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TraU.gap.json b/pfam_gap_rates/TraU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1e170e2af4232a92043d09ebc776b9c13105a59
--- /dev/null
+++ b/pfam_gap_rates/TraU.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TraX.gap.json b/pfam_gap_rates/TraX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fdccc0e14cea5f44142480cec3bc0e7c971c27aa
--- /dev/null
+++ b/pfam_gap_rates/TraX.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Trefoil.gap.json b/pfam_gap_rates/Trefoil.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..245a61fec1cc35529aba30be98e7a2c407bd4a38
--- /dev/null
+++ b/pfam_gap_rates/Trefoil.gap.json
@@ -0,0 +1 @@
+{"family": "Trefoil", "n_seqs": 546, "length": 59, "gap_rates": [0.4230769230769231, 0.4230769230769231, 0.5842490842490843, 0.4084249084249084, 0.19597069597069597, 0.14652014652014653, 0.10989010989010989, 0.07142857142857142, 0.04395604395604396, 0.02564102564102564, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.029304029304029304, 0.018315018315018316, 0.5293040293040293, 0.01282051282051282, 0.9340659340659341, 0.8864468864468864, 0.007326007326007326, 0.005494505494505495, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9487179487179487, 0.0, 0.0, 0.0, 0.0018315018315018315, 0.003663003663003663, 0.005494505494505495, 0.007326007326007326, 0.01282051282051282, 0.47619047619047616, 0.4413919413919414, 0.21062271062271062, 0.1813186813186813, 0.15934065934065933, 0.7765567765567766, 0.8333333333333334, 0.8901098901098901, 0.9230769230769231, 0.9358974358974359, 0.9487179487179487, 0.9285714285714286, 0.8992673992673993, 0.8736263736263736, 0.8021978021978022, 0.7307692307692307, 0.0695970695970696, 0.06593406593406594, 0.045787545787545784, 0.07875457875457875, 0.1282051282051282, 0.4230769230769231], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tropomyosin_1.gap.json b/pfam_gap_rates/Tropomyosin_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4aaa684caeb7e55e29fc8c46b13673e81cefe433
--- /dev/null
+++ b/pfam_gap_rates/Tropomyosin_1.gap.json
@@ -0,0 +1 @@
+{"family": "Tropomyosin_1", "n_seqs": 245, "length": 143, "gap_rates": [0.22448979591836735, 0.17959183673469387, 0.17551020408163265, 0.17551020408163265, 0.1673469387755102, 0.1673469387755102, 0.16326530612244897, 0.15510204081632653, 0.14285714285714285, 0.1306122448979592, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.11836734693877551, 0.11836734693877551, 0.11836734693877551, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.11836734693877551, 0.11836734693877551, 0.11836734693877551, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.10612244897959183, 0.10612244897959183, 0.10612244897959183, 0.10612244897959183, 0.10612244897959183, 0.10612244897959183, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11020408163265306, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11836734693877551, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12653061224489795, 0.1469387755102041, 0.1469387755102041, 0.1510204081632653, 0.17142857142857143, 0.17551020408163265, 0.17551020408163265, 0.17959183673469387, 0.19591836734693877, 0.19183673469387755, 0.19183673469387755, 0.17959183673469387, 0.18775510204081633, 0.1836734693877551, 0.22040816326530613, 0.2938775510204082, 0.32653061224489793, 0.31020408163265306, 0.2897959183673469, 0.2897959183673469, 0.2897959183673469, 0.2857142857142857, 0.2938775510204082, 0.3020408163265306, 0.2979591836734694, 0.2897959183673469, 0.2938775510204082, 0.2938775510204082, 0.2897959183673469, 0.2979591836734694, 0.2979591836734694, 0.2979591836734694, 0.2979591836734694, 0.2979591836734694, 0.2979591836734694, 0.2979591836734694, 0.2979591836734694, 0.2979591836734694, 0.2979591836734694, 0.2938775510204082, 0.2938775510204082, 0.2816326530612245, 0.2857142857142857, 0.31020408163265306, 0.3183673469387755, 0.3183673469387755, 0.3183673469387755, 0.3183673469387755, 0.32653061224489793, 0.3306122448979592, 0.3306122448979592, 0.3306122448979592, 0.32653061224489793, 0.32653061224489793, 0.32653061224489793, 0.32653061224489793, 0.3346938775510204, 0.34285714285714286, 0.3469387755102041, 0.3469387755102041, 0.3469387755102041, 0.3469387755102041, 0.3469387755102041, 0.3469387755102041, 0.3469387755102041, 0.3510204081632653, 0.3510204081632653, 0.3510204081632653, 0.3510204081632653, 0.3510204081632653, 0.3510204081632653, 0.3510204081632653, 0.3510204081632653, 0.3510204081632653, 0.3510204081632653, 0.3510204081632653, 0.3551020408163265, 0.35918367346938773, 0.35918367346938773, 0.35918367346938773, 0.35918367346938773, 0.3795918367346939, 0.40816326530612246, 0.7918367346938775], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trp_Tyr_perm.gap.json b/pfam_gap_rates/Trp_Tyr_perm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b84f796dc0587f4376803e5cdb7d427dc2563502
--- /dev/null
+++ b/pfam_gap_rates/Trp_Tyr_perm.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Trs65.gap.json b/pfam_gap_rates/Trs65.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..282c5957a1bcc50293816e39bf5fdebfa9f47e25
--- /dev/null
+++ b/pfam_gap_rates/Trs65.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TruB_C_2.gap.json b/pfam_gap_rates/TruB_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de19d45514a7cbf2259518a46d394acbcd57ed00
--- /dev/null
+++ b/pfam_gap_rates/TruB_C_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Trypan_glycop.gap.json b/pfam_gap_rates/Trypan_glycop.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e7247a76260dd674ccfad8f479e7e0cf1274e72
--- /dev/null
+++ b/pfam_gap_rates/Trypan_glycop.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tyr-DNA_phospho.gap.json b/pfam_gap_rates/Tyr-DNA_phospho.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfbd66cbec3fb2d3564c81d1aa830c3bea93a4c9
--- /dev/null
+++ b/pfam_gap_rates/Tyr-DNA_phospho.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/U5_2-snRNA_bdg.gap.json b/pfam_gap_rates/U5_2-snRNA_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e13e28bec3411f76f1192bfd02b0266797bb06c
--- /dev/null
+++ b/pfam_gap_rates/U5_2-snRNA_bdg.gap.json
@@ -0,0 +1 @@
+{"family": "U5_2-snRNA_bdg", "n_seqs": 339, "length": 134, "gap_rates": [0.36283185840707965, 0.061946902654867256, 0.05014749262536873, 0.05014749262536873, 0.05014749262536873, 0.05014749262536873, 0.05014749262536873, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.0471976401179941, 0.04424778761061947, 0.04129793510324484, 0.04129793510324484, 0.04129793510324484, 0.038348082595870206, 0.029498525073746312, 0.02654867256637168, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02064896755162242, 0.02064896755162242, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.017699115044247787, 0.017699115044247787, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.02654867256637168, 0.02654867256637168, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.017699115044247787, 0.02064896755162242, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.017699115044247787, 0.017699115044247787, 0.014749262536873156, 0.017699115044247787, 0.017699115044247787, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.02064896755162242, 0.02064896755162242, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02654867256637168, 0.032448377581120944, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.038348082595870206, 0.04129793510324484, 0.04129793510324484, 0.04424778761061947, 0.0471976401179941, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05604719764011799, 0.058997050147492625, 0.18289085545722714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UBA_3.gap.json b/pfam_gap_rates/UBA_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c9d367829ade7e2b990a105d3b50fb1e14e4b39
--- /dev/null
+++ b/pfam_gap_rates/UBA_3.gap.json
@@ -0,0 +1 @@
+{"family": "UBA_3", "n_seqs": 120, "length": 56, "gap_rates": [0.6, 0.475, 0.4, 0.36666666666666664, 0.2916666666666667, 0.2, 0.95, 0.058333333333333334, 0.058333333333333334, 0.05, 0.008333333333333333, 0.008333333333333333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008333333333333333, 0.008333333333333333, 0.06666666666666667, 0.075, 0.09166666666666666, 0.1, 0.125, 0.18333333333333332, 0.19166666666666668, 0.30833333333333335, 0.275, 0.575, 0.35833333333333334, 0.35, 0.4083333333333333, 0.44166666666666665, 0.525, 0.5333333333333333, 0.5416666666666666, 0.55, 0.5416666666666666, 0.5416666666666666, 0.5416666666666666, 0.5416666666666666, 0.5583333333333333, 0.6, 0.675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UBA_e1_thiolCys.gap.json b/pfam_gap_rates/UBA_e1_thiolCys.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9586f549998145cdaef1918630911dec57e8e98
--- /dev/null
+++ b/pfam_gap_rates/UBA_e1_thiolCys.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UDPG_MGDP_dh.gap.json b/pfam_gap_rates/UDPG_MGDP_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a293c9b0e9e84267e006e005dd8dfee09aa8a433
--- /dev/null
+++ b/pfam_gap_rates/UDPG_MGDP_dh.gap.json
@@ -0,0 +1 @@
+{"family": "UDPG_MGDP_dh", "n_seqs": 3949, "length": 95, "gap_rates": [0.5634337807039757, 0.038743985819194734, 0.014180805267156243, 0.012914661939731578, 0.01139528994682198, 0.01139528994682198, 0.011142061281337047, 0.010635603950367181, 0.009369460622942517, 0.009369460622942517, 0.009369460622942517, 0.009369460622942517, 0.008863003291972652, 0.008863003291972652, 0.008863003291972652, 0.008609774626487718, 0.007596859964547987, 0.007596859964547987, 0.007596859964547987, 0.007596859964547987, 0.007596859964547987, 0.007596859964547987, 0.007343631299063054, 0.006583945302608255, 0.006330716637123322, 0.006330716637123322, 0.005824259306153457, 0.005824259306153457, 0.006330716637123322, 0.006330716637123322, 0.005571030640668524, 0.005824259306153457, 0.005824259306153457, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005824259306153457, 0.005317801975183591, 0.0050645733096986575, 0.0050645733096986575, 0.004558115978728792, 0.004304887313243859, 0.004304887313243859, 0.004558115978728792, 0.004811344644213725, 0.004558115978728792, 0.005317801975183591, 0.3461635857179033, 0.24816409217523425, 0.011142061281337047, 0.00607748797163839, 0.005317801975183591, 0.005317801975183591, 0.0050645733096986575, 0.004558115978728792, 0.004811344644213725, 0.0050645733096986575, 0.1392757660167131, 0.005317801975183591, 0.005824259306153457, 0.005571030640668524, 0.005824259306153457, 0.005824259306153457, 0.006330716637123322, 0.00607748797163839, 0.007090402633578121, 0.007596859964547987, 0.010129146619397315, 0.01215497594327678, 0.01316789060521651, 0.014180805267156243, 0.014687262598126107, 0.014940491263611041, 0.01823246391491517, 0.020005064573309698, 0.050392504431501645, 0.06280070904026336, 0.15598885793871867, 0.18612306913142568, 0.11800455811597872, 0.09040263357812105, 0.8354013674347937, 0.834135224107369, 0.049126361104076983, 0.04710053178019752, 0.04735376044568245, 0.046847303114712587, 0.04710053178019752, 0.047860217776652315, 0.049126361104076983, 0.05165864775892631, 0.054697391744745506, 0.0600151937199291, 0.06381362370220309, 0.1501645986325652], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UNC45-central.gap.json b/pfam_gap_rates/UNC45-central.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a120866e0f1ebf0ed237606f39ca1683bc2ac2db
--- /dev/null
+++ b/pfam_gap_rates/UNC45-central.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0126.gap.json b/pfam_gap_rates/UPF0126.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d3fc9420f8d9f486b4718d7a57a92a2c2ca5431
--- /dev/null
+++ b/pfam_gap_rates/UPF0126.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0126", "n_seqs": 2113, "length": 80, "gap_rates": [0.9436819687647894, 0.14150496923805017, 0.03644107903454804, 0.017037387600567912, 0.012304779933743492, 0.009938476100331283, 0.00946521533364884, 0.00946521533364884, 0.00946521533364884, 0.00946521533364884, 0.00946521533364884, 0.008518693800283956, 0.006625650733554188, 0.006152389966871746, 0.006152389966871746, 0.006152389966871746, 0.006152389966871746, 0.006152389966871746, 0.005679129200189304, 0.005679129200189304, 0.005679129200189304, 0.017037387600567912, 0.9375295787979177, 0.006625650733554188, 0.003312825366777094, 0.003312825366777094, 0.003312825366777094, 0.002839564600094652, 0.002839564600094652, 0.001893043066729768, 0.001419782300047326, 0.001419782300047326, 0.000946521533364884, 0.000946521533364884, 0.001419782300047326, 0.001893043066729768, 0.000946521533364884, 0.000946521533364884, 0.001419782300047326, 0.000946521533364884, 0.000473260766682442, 0.000473260766682442, 0.000473260766682442, 0.000473260766682442, 0.001419782300047326, 0.000946521533364884, 0.001893043066729768, 0.00236630383341221, 0.00236630383341221, 0.00236630383341221, 0.2243256034074775, 0.7444391859914813, 0.12068149550402271, 0.005679129200189304, 0.017037387600567912, 0.005205868433506862, 0.00473260766682442, 0.01893043066729768, 0.00946521533364884, 0.9313771888310459, 0.005679129200189304, 0.9484145764316139, 0.45906294368196876, 0.006625650733554188, 0.005679129200189304, 0.00709891150023663, 0.00709891150023663, 0.006152389966871746, 0.006152389966871746, 0.006152389966871746, 0.008991954566966399, 0.007572172266919072, 0.008045433033601515, 0.008518693800283956, 0.01419782300047326, 0.031235210601041175, 0.06956933270231898, 0.110269758637009, 0.23805016564126835, 0.6900141978230004], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0149.gap.json b/pfam_gap_rates/UPF0149.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c5d24337841d003823139ed0250edc2474558f9
--- /dev/null
+++ b/pfam_gap_rates/UPF0149.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0149", "n_seqs": 400, "length": 229, "gap_rates": [0.7125, 0.45, 0.3175, 0.2475, 0.19, 0.1725, 0.16, 0.16, 0.1425, 0.145, 0.1425, 0.215, 0.1375, 0.115, 0.09, 0.075, 0.45, 0.92, 0.4375, 0.4275, 0.03, 0.0275, 0.025, 0.025, 0.025, 0.0225, 0.0225, 0.0225, 0.0225, 0.0175, 0.0175, 0.0175, 0.0175, 0.0175, 0.115, 0.095, 0.0525, 0.03, 0.02, 0.015, 0.0175, 0.0225, 0.0175, 0.0125, 0.01, 0.01, 0.0125, 0.0125, 0.0125, 0.69, 0.8525, 0.9225, 0.795, 0.61, 0.0525, 0.5375, 0.4875, 0.4225, 0.39, 0.3, 0.27, 0.0325, 0.025, 0.0225, 0.0225, 0.0225, 0.02, 0.815, 0.8275, 0.8225, 0.8075, 0.015, 0.0075, 0.0125, 0.0075, 0.0075, 0.01, 0.005, 0.005, 0.005, 0.005, 0.0075, 0.0075, 0.0075, 0.0175, 0.0075, 0.01, 0.01, 0.515, 0.0825, 0.045, 0.23, 0.2775, 0.165, 0.1475, 0.155, 0.1625, 0.155, 0.31, 0.84, 0.9425, 0.9125, 0.4325, 0.2325, 0.105, 0.1675, 0.15, 0.1475, 0.1475, 0.1475, 0.145, 0.1125, 0.1325, 0.1225, 0.11, 0.0275, 0.755, 0.785, 0.7925, 0.8025, 0.8425, 0.8825, 0.9025, 0.925, 0.9275, 0.9375, 0.9425, 0.9475, 0.95, 0.9475, 0.945, 0.94, 0.9375, 0.9275, 0.92, 0.895, 0.8625, 0.8125, 0.795, 0.79, 0.7625, 0.72, 0.015, 0.015, 0.015, 0.015, 0.015, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0175, 0.01, 0.01, 0.02, 0.03, 0.0325, 0.5075, 0.81, 0.8925, 0.9475, 0.925, 0.8675, 0.8025, 0.3525, 0.2175, 0.1, 0.075, 0.7225, 0.0625, 0.1925, 0.035, 0.03, 0.03, 0.0275, 0.0275, 0.0275, 0.0275, 0.0275, 0.03, 0.03, 0.03, 0.0325, 0.0375, 0.0425, 0.0425, 0.0425, 0.045, 0.7675, 0.875, 0.9075, 0.8825, 0.8425, 0.675, 0.38, 0.51, 0.16, 0.1075, 0.0825, 0.0775, 0.0775, 0.0825, 0.075, 0.0775, 0.075, 0.0775, 0.08, 0.0825, 0.0875, 0.09, 0.09, 0.09, 0.095, 0.0975, 0.105, 0.1075, 0.1125, 0.1175, 0.125, 0.1275, 0.13, 0.1475, 0.16, 0.2, 0.2375, 0.31, 0.355, 0.5175], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0197.gap.json b/pfam_gap_rates/UPF0197.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86f1f0fcb7362f9b76e9710b30b0024d2af7067c
--- /dev/null
+++ b/pfam_gap_rates/UPF0197.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0197", "n_seqs": 164, "length": 73, "gap_rates": [0.774390243902439, 0.3719512195121951, 0.32926829268292684, 0.07317073170731707, 0.054878048780487805, 0.054878048780487805, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.036585365853658534, 0.036585365853658534, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.012195121951219513, 0.03048780487804878, 0.036585365853658534, 0.054878048780487805, 0.08536585365853659, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.054878048780487805, 0.09146341463414634, 0.07317073170731707, 0.06097560975609756, 0.03048780487804878, 0.03048780487804878, 0.036585365853658534, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.036585365853658534, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.042682926829268296, 0.04878048780487805, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07926829268292683, 0.08536585365853659, 0.20121951219512196], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/USP7_C2.gap.json b/pfam_gap_rates/USP7_C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f008874ce876a2406300a01d06fac2b6317d53b
--- /dev/null
+++ b/pfam_gap_rates/USP7_C2.gap.json
@@ -0,0 +1 @@
+{"family": "USP7_C2", "n_seqs": 422, "length": 253, "gap_rates": [0.8364928909952607, 0.18009478672985782, 0.17772511848341233, 0.17535545023696683, 0.17535545023696683, 0.17535545023696683, 0.16350710900473933, 0.16350710900473933, 0.15876777251184834, 0.16113744075829384, 0.16113744075829384, 0.16350710900473933, 0.16113744075829384, 0.15639810426540285, 0.14691943127962084, 0.11611374407582939, 0.11137440758293839, 0.10426540284360189, 0.1018957345971564, 0.0971563981042654, 0.09004739336492891, 0.08530805687203792, 0.08530805687203792, 0.08530805687203792, 0.08767772511848342, 0.10900473933649289, 0.08530805687203792, 0.09004739336492891, 0.10426540284360189, 0.08530805687203792, 0.08293838862559241, 0.08530805687203792, 0.14218009478672985, 0.06872037914691943, 0.06872037914691943, 0.06872037914691943, 0.06872037914691943, 0.06872037914691943, 0.06872037914691943, 0.06872037914691943, 0.06872037914691943, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ub-Mut7C.gap.json b/pfam_gap_rates/Ub-Mut7C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21095ea755c6b2c2b8eeccbccb1a545900d07501
--- /dev/null
+++ b/pfam_gap_rates/Ub-Mut7C.gap.json
@@ -0,0 +1 @@
+{"family": "Ub-Mut7C", "n_seqs": 171, "length": 81, "gap_rates": [0.7543859649122807, 0.6374269005847953, 0.3508771929824561, 0.1695906432748538, 0.11695906432748537, 0.10526315789473684, 0.09941520467836257, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08187134502923976, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05847953216374269, 0.07017543859649122, 0.04678362573099415, 0.06432748538011696, 0.03508771929824561, 0.017543859649122806, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005847953216374269, 0.0, 0.0, 0.0, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.023391812865497075, 0.023391812865497075, 0.029239766081871343, 0.21052631578947367, 0.2982456140350877, 0.39766081871345027, 0.4444444444444444, 0.5321637426900585, 0.8128654970760234], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ufd2P_core.gap.json b/pfam_gap_rates/Ufd2P_core.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8dcbb62f003c44ccfa382ee5066dfb88cdcfbdec
--- /dev/null
+++ b/pfam_gap_rates/Ufd2P_core.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Utp11.gap.json b/pfam_gap_rates/Utp11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e52744648d5fd45a9bac51dd58136cd677aa324
--- /dev/null
+++ b/pfam_gap_rates/Utp11.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Utp13.gap.json b/pfam_gap_rates/Utp13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1104170cfdaf01872c61de576845c2c5bf9df77d
--- /dev/null
+++ b/pfam_gap_rates/Utp13.gap.json
@@ -0,0 +1 @@
+{"family": "Utp13", "n_seqs": 320, "length": 191, "gap_rates": [0.265625, 0.084375, 0.05625, 0.053125, 0.046875, 0.046875, 0.046875, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.040625, 0.040625, 0.0375, 0.0375, 0.0375, 0.0375, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.028125, 0.028125, 0.028125, 0.034375, 0.0375, 0.040625, 0.046875, 0.05, 0.925, 0.9375, 0.93125, 0.809375, 0.05625, 0.146875, 0.31875, 0.465625, 0.4875, 0.4875, 0.45625, 0.778125, 0.821875, 0.85625, 0.86875, 0.878125, 0.915625, 0.946875, 0.928125, 0.884375, 0.871875, 0.859375, 0.834375, 0.809375, 0.753125, 0.39375, 0.303125, 0.0375, 0.021875, 0.021875, 0.021875, 0.021875, 0.021875, 0.01875, 0.01875, 0.01875, 0.021875, 0.01875, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.01875, 0.01875, 0.01875, 0.015625, 0.015625, 0.015625, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.025, 0.025, 0.025, 0.028125, 0.028125, 0.03125, 0.03125, 0.03125, 0.034375, 0.034375, 0.034375, 0.034375, 0.034375, 0.034375, 0.034375, 0.0375, 0.040625, 0.046875, 0.0875, 0.0625, 0.05, 0.65, 0.653125, 0.6625, 0.684375, 0.790625, 0.796875, 0.80625, 0.834375, 0.85, 0.85, 0.8625, 0.86875, 0.896875, 0.915625, 0.93125, 0.946875, 0.9375, 0.915625, 0.90625, 0.878125, 0.8625, 0.85625, 0.85, 0.84375, 0.8125, 0.8, 0.796875, 0.771875, 0.671875, 0.653125, 0.653125, 0.6375, 0.04375, 0.046875, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.046875, 0.05, 0.059375, 0.0625, 0.065625, 0.065625, 0.071875, 0.071875, 0.071875, 0.075, 0.075, 0.075, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.084375, 0.096875, 0.096875, 0.10625, 0.146875, 0.24375, 0.284375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Utp21.gap.json b/pfam_gap_rates/Utp21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a74cd3313e377768840d416e15329052c39251f0
--- /dev/null
+++ b/pfam_gap_rates/Utp21.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VPEP.gap.json b/pfam_gap_rates/VPEP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ecb9fc017d7e3f51c5a6e99eaccab37e5fda1f8
--- /dev/null
+++ b/pfam_gap_rates/VPEP.gap.json
@@ -0,0 +1 @@
+{"family": "VPEP", "n_seqs": 1851, "length": 30, "gap_rates": [0.20421393841166938, 0.015667206915180983, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7028633171258779, 0.6320907617504052, 0.008103727714748784, 0.008103727714748784, 0.0, 0.0, 0.0, 0.0016207455429497568, 0.002701242571582928, 0.9470556455969746, 0.015126958400864398, 0.0016207455429497568, 0.0010804970286331713, 0.8811453268503512, 0.6861156131820637, 0.05456509994597515, 0.029173419773095625, 0.01728795245813074, 0.03241491085899514, 0.9146407347379795, 0.757428417071853, 0.06050783360345759, 0.23987034035656402], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VanY.gap.json b/pfam_gap_rates/VanY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15b12e9a7e3fa649a25cbae7117aa641cf6a7849
--- /dev/null
+++ b/pfam_gap_rates/VanY.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VanZ.gap.json b/pfam_gap_rates/VanZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65d317e63bb7df0ba87efe950d5154d48bd2fc3d
--- /dev/null
+++ b/pfam_gap_rates/VanZ.gap.json
@@ -0,0 +1 @@
+{"family": "VanZ", "n_seqs": 2143, "length": 182, "gap_rates": [0.7928138124125058, 0.5837610825944937, 0.48436770881941205, 0.43117125524965, 0.4041063929071395, 0.38590760615958936, 0.3728418105459636, 0.3621091927204853, 0.3574428371441904, 0.35417638824078396, 0.34997666822211854, 0.3467102193187121, 0.34437704153056464, 0.3453103126458236, 0.34391040597293515, 0.3471768548763416, 0.3476434904339711, 0.3462435837610826, 0.3457769482034531, 0.34484367708819413, 0.36490900606626225, 0.36537564162389174, 0.39150723285114325, 0.4349043397106859, 0.46336910872608494, 0.4876341577228185, 0.5067662155856276, 0.5590293980401306, 0.5730284647690154, 0.5842277181521232, 0.626691553896407, 0.6271581894540365, 0.5627624825011666, 0.8268782081194587, 0.8777414839010733, 0.9304713019132058, 0.9440037330844611, 0.9015398973401774, 0.8609426038264115, 0.7904806346243584, 0.4213719085394307, 0.44657022865142326, 0.4148390107326178, 0.40223985067662155, 0.3826411572561829, 0.3630424638357443, 0.34997666822211854, 0.33924405039664024, 0.3350443303779748, 0.3350443303779748, 0.3294447036864209, 0.3196453569762016, 0.6864209052729818, 0.7615492300513299, 0.8483434437704153, 0.9174055062995801, 0.8740083994400373, 0.80727951469902, 0.7162855809612693, 0.6621558562762483, 0.378908072795147, 0.731217918805413, 0.730284647690154, 0.9384041063929072, 0.755949603359776, 0.5454969668688754, 0.6238917405506299, 0.7498833411105926, 0.8530097993467102, 0.9127391507232852, 0.9398040130657956, 0.8884741017265516, 0.8114792347176855, 0.6794213719085395, 0.5851609892673821, 0.5179654689687354, 0.65142323845077, 0.5272981801213252, 0.8530097993467102, 0.5893607092860476, 0.22025198320111994, 0.4708352776481568, 0.9323378441437238, 0.6994867008866076, 0.3560429304713019, 0.08586094260382642, 0.059729351376574896, 0.04433037797480168, 0.03173121791880541, 0.025198320111992533, 0.019132057862809144, 0.018198786747550162, 0.01726551563229118, 0.015398973401773215, 0.8133457769482034, 0.8180121325244983, 0.7946803546430238, 0.013065795613625758, 0.019132057862809144, 0.014932337844143724, 0.011665888940737284, 0.015398973401773215, 0.00979934671021932, 0.01026598226784881, 0.00979934671021932, 0.012132524498366775, 0.06159589360709286, 0.04479701353243117, 0.045730284647690154, 0.5011665888940737, 0.8922071861875875, 0.9412039197386841, 0.7895473635090994, 0.26598226784881007, 0.07932804479701354, 0.27718152123191786, 0.028464769015398975, 0.6061595893607092, 0.6374241717218853, 0.7344843677088194, 0.8441437237517498, 0.9034064395706953, 0.94493700419972, 0.9304713019132058, 0.8716752216518898, 0.781614559029398, 0.6892207186187588, 0.6154923005132991, 0.6010265982267848, 0.00979934671021932, 0.005132991133924405, 0.004666355576294913, 0.004199720018665422, 0.003733084461035931, 0.003733084461035931, 0.003733084461035931, 0.004666355576294913, 0.004666355576294913, 0.004666355576294913, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.07746150256649556, 0.8665422305179654, 0.8838077461502567, 0.9127391507232852, 0.9332711152589828, 0.8842743817078862, 0.8824078394773682, 0.7624825011665889, 0.004199720018665422, 0.008866075594960336, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004199720018665422, 0.004666355576294913, 0.004666355576294913, 0.004666355576294913, 0.004666355576294913, 0.004666355576294913, 0.004666355576294913, 0.004666355576294913, 0.005132991133924405, 0.0055996266915538965, 0.01026598226784881, 0.013065795613625758, 0.018665422305179653, 0.03966402239850677, 0.10079328044797013, 0.19878674755016332, 0.41810545963602425, 0.6808212785814279], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vezatin.gap.json b/pfam_gap_rates/Vezatin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ddfcd99880952695b7bc8d82ff77c33ec2a59b2
--- /dev/null
+++ b/pfam_gap_rates/Vezatin.gap.json
@@ -0,0 +1 @@
+{"family": "Vezatin", "n_seqs": 135, "length": 335, "gap_rates": [0.8592592592592593, 0.7111111111111111, 0.4888888888888889, 0.3925925925925926, 0.34074074074074073, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.35555555555555557, 0.34074074074074073, 0.8962962962962963, 0.9407407407407408, 0.9185185185185185, 0.8444444444444444, 0.6370370370370371, 0.4444444444444444, 0.4, 0.362962962962963, 0.34814814814814815, 0.3037037037037037, 0.28888888888888886, 0.2814814814814815, 0.2740740740740741, 0.26666666666666666, 0.25925925925925924, 0.23703703703703705, 0.2222222222222222, 0.21481481481481482, 0.2074074074074074, 0.2, 0.2074074074074074, 0.21481481481481482, 0.31851851851851853, 0.3037037037037037, 0.28888888888888886, 0.2074074074074074, 0.2074074074074074, 0.2074074074074074, 0.18518518518518517, 0.562962962962963, 0.8962962962962963, 0.4888888888888889, 0.26666666666666666, 0.25925925925925924, 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\ No newline at end of file
diff --git a/pfam_gap_rates/VirB3.gap.json b/pfam_gap_rates/VirB3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0db9fcd411af48b51afb3645ef2a313c30dc7519
--- /dev/null
+++ b/pfam_gap_rates/VirB3.gap.json
@@ -0,0 +1 @@
+{"family": "VirB3", "n_seqs": 306, "length": 97, "gap_rates": [0.9215686274509803, 0.4411764705882353, 0.1895424836601307, 0.06209150326797386, 0.05228758169934641, 0.0457516339869281, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.026143790849673203, 0.02287581699346405, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.00980392156862745, 0.00980392156862745, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.0032679738562091504, 0.0032679738562091504, 0.006535947712418301, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.7581699346405228, 0.7745098039215687, 0.8627450980392157, 0.9477124183006536, 0.9117647058823529, 0.8562091503267973, 0.761437908496732, 0.7450980392156863, 0.35947712418300654, 0.00980392156862745, 0.00980392156862745, 0.013071895424836602, 0.00980392156862745, 0.006535947712418301, 0.0032679738562091504, 0.9183006535947712, 0.9183006535947712, 0.013071895424836602, 0.08823529411764706, 0.0784313725490196, 0.0784313725490196, 0.06862745098039216, 0.8104575163398693, 0.7581699346405228, 0.06209150326797386, 0.0, 0.0, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.39215686274509803, 0.4084967320261438, 0.43790849673202614, 0.4542483660130719, 0.4869281045751634, 0.5, 0.35294117647058826, 0.35947712418300654, 0.4215686274509804, 0.42810457516339867, 0.47058823529411764, 0.4934640522875817, 0.9052287581699346, 0.5032679738562091, 0.5196078431372549, 0.545751633986928, 0.5588235294117647, 0.7254901960784313], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Virul_fac_BrkB.gap.json b/pfam_gap_rates/Virul_fac_BrkB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e05c0230df680997b0a2a13dc1234209e73f870
--- /dev/null
+++ b/pfam_gap_rates/Virul_fac_BrkB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VitK2_biosynth.gap.json b/pfam_gap_rates/VitK2_biosynth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bea010c786a28d446537f395f839453a4d3b519
--- /dev/null
+++ b/pfam_gap_rates/VitK2_biosynth.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vps36_ESCRT-II.gap.json b/pfam_gap_rates/Vps36_ESCRT-II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7bcaa7e5b2fce209df586155a352beb58545a49
--- /dev/null
+++ b/pfam_gap_rates/Vps36_ESCRT-II.gap.json
@@ -0,0 +1 @@
+{"family": "Vps36_ESCRT-II", "n_seqs": 225, "length": 94, "gap_rates": [0.92, 0.7288888888888889, 0.37777777777777777, 0.3466666666666667, 0.28888888888888886, 0.22666666666666666, 0.19111111111111112, 0.13777777777777778, 0.2088888888888889, 0.09777777777777778, 0.07555555555555556, 0.057777777777777775, 0.057777777777777775, 0.05333333333333334, 0.05333333333333334, 0.04888888888888889, 0.04888888888888889, 0.04888888888888889, 0.04888888888888889, 0.044444444444444446, 0.044444444444444446, 0.04, 0.035555555555555556, 0.035555555555555556, 0.035555555555555556, 0.04, 0.035555555555555556, 0.02666666666666667, 0.017777777777777778, 0.013333333333333334, 0.9377777777777778, 0.013333333333333334, 0.013333333333333334, 0.3022222222222222, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.03111111111111111, 0.06222222222222222, 0.07111111111111111, 0.06666666666666667, 0.057777777777777775, 0.04, 0.03111111111111111, 0.044444444444444446, 0.28, 0.1111111111111111, 0.06666666666666667, 0.02666666666666667, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.03111111111111111, 0.03111111111111111, 0.035555555555555556, 0.7155555555555555, 0.8133333333333334, 0.6888888888888889, 0.5866666666666667, 0.04888888888888889, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.04888888888888889, 0.04888888888888889, 0.13777777777777778, 0.8844444444444445, 0.11555555555555555, 0.04888888888888889, 0.05333333333333334, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.06222222222222222, 0.19111111111111112, 0.3422222222222222, 0.5111111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vps5.gap.json b/pfam_gap_rates/Vps5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2431663f61f0ef3130da81c0d406c5de807d17a8
--- /dev/null
+++ b/pfam_gap_rates/Vps5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vps53_N.gap.json b/pfam_gap_rates/Vps53_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1bb6832ba16b30d3cdcef72d86ffb9e5d73cc32
--- /dev/null
+++ b/pfam_gap_rates/Vps53_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vsr.gap.json b/pfam_gap_rates/Vsr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee5fff3d28061d09da9d01ebdab838239400745a
--- /dev/null
+++ b/pfam_gap_rates/Vsr.gap.json
@@ -0,0 +1 @@
+{"family": "Vsr", "n_seqs": 416, "length": 78, "gap_rates": [0.5865384615384616, 0.47115384615384615, 0.4567307692307692, 0.43028846153846156, 0.37740384615384615, 0.34615384615384615, 0.3125, 0.2764423076923077, 0.25, 0.1971153846153846, 0.1658653846153846, 0.15625, 0.03125, 0.028846153846153848, 0.026442307692307692, 0.026442307692307692, 0.026442307692307692, 0.026442307692307692, 0.026442307692307692, 0.038461538461538464, 0.026442307692307692, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.019230769230769232, 0.016826923076923076, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.019230769230769232, 0.019230769230769232, 0.014423076923076924, 0.009615384615384616, 0.9399038461538461, 0.009615384615384616, 0.01201923076923077, 0.01201923076923077, 0.016826923076923076, 0.028846153846153848, 0.0625, 0.03125, 0.014423076923076924, 0.014423076923076924, 0.019230769230769232, 0.9038461538461539, 0.9038461538461539, 0.9038461538461539, 0.01201923076923077, 0.01201923076923077, 0.01201923076923077, 0.009615384615384616, 0.009615384615384616, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.028846153846153848, 0.2932692307692308, 0.3798076923076923, 0.6177884615384616, 0.6875, 0.9423076923076923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WD40_4.gap.json b/pfam_gap_rates/WD40_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..295110962073dee8eede6b467a936040c379ab1f
--- /dev/null
+++ b/pfam_gap_rates/WD40_4.gap.json
@@ -0,0 +1 @@
+{"family": "WD40_4", "n_seqs": 615, "length": 46, "gap_rates": [0.14634146341463414, 0.08780487804878048, 0.06829268292682927, 0.06016260162601626, 0.05203252032520325, 0.04227642276422764, 0.03577235772357724, 0.032520325203252036, 0.032520325203252036, 0.030894308943089432, 0.027642276422764227, 0.943089430894309, 0.01951219512195122, 0.6487804878048781, 0.008130081300813009, 0.0065040650406504065, 0.0065040650406504065, 0.0065040650406504065, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.0065040650406504065, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.8569105691056911, 0.00975609756097561, 0.011382113821138212, 0.013008130081300813, 0.013008130081300813, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.02113821138211382, 0.02926829268292683, 0.02926829268292683, 0.04878048780487805, 0.12195121951219512, 0.22926829268292684, 0.42601626016260163], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WGR.gap.json b/pfam_gap_rates/WGR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b1868e0eb8555adc6aec07f39466b0341633ed5
--- /dev/null
+++ b/pfam_gap_rates/WGR.gap.json
@@ -0,0 +1 @@
+{"family": "WGR", "n_seqs": 788, "length": 88, "gap_rates": [0.5558375634517766, 0.4200507614213198, 0.30076142131979694, 0.2563451776649746, 0.21954314720812182, 0.20431472081218274, 0.1865482233502538, 0.16243654822335024, 0.15736040609137056, 0.21065989847715735, 0.1649746192893401, 0.07741116751269035, 0.9035532994923858, 0.9251269035532995, 0.9010152284263959, 0.06218274111675127, 0.04949238578680203, 0.04568527918781726, 0.044416243654822336, 0.04060913705583756, 0.03934010152284264, 0.03807106598984772, 0.03680203045685279, 0.03426395939086294, 0.03426395939086294, 0.36928934010152287, 0.19035532994923857, 0.2182741116751269, 0.2068527918781726, 0.233502538071066, 0.20050761421319796, 0.027918781725888325, 0.015228426395939087, 0.9428934010152284, 0.01015228426395939, 0.01015228426395939, 0.007614213197969543, 0.007614213197969543, 0.007614213197969543, 0.006345177664974619, 0.03807106598984772, 0.007614213197969543, 0.006345177664974619, 0.007614213197969543, 0.007614213197969543, 0.883248730964467, 0.007614213197969543, 0.007614213197969543, 0.9035532994923858, 0.817258883248731, 0.011421319796954314, 0.011421319796954314, 0.01015228426395939, 0.013959390862944163, 0.011421319796954314, 0.012690355329949238, 0.9276649746192893, 0.031725888324873094, 0.021573604060913704, 0.07487309644670051, 0.8895939086294417, 0.025380710659898477, 0.021573604060913704, 0.01903553299492386, 0.01903553299492386, 0.01903553299492386, 0.01903553299492386, 0.01903553299492386, 0.02030456852791878, 0.02030456852791878, 0.02030456852791878, 0.02284263959390863, 0.024111675126903553, 0.0266497461928934, 0.02918781725888325, 0.030456852791878174, 0.03807106598984772, 0.04187817258883249, 0.044416243654822336, 0.048223350253807105, 0.05456852791878172, 0.05583756345177665, 0.07360406091370558, 0.1548223350253807, 0.217005076142132, 0.37817258883248733, 0.5342639593908629, 0.6903553299492385], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WHG.gap.json b/pfam_gap_rates/WHG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b3bdb87ab0af93cd89d5983d68cbe7540e1f611
--- /dev/null
+++ b/pfam_gap_rates/WHG.gap.json
@@ -0,0 +1 @@
+{"family": "WHG", "n_seqs": 1299, "length": 108, "gap_rates": [0.7906081601231717, 0.34565050038491146, 0.14395688991531946, 0.07390300230946882, 0.04772902232486528, 0.03002309468822171, 0.024634334103156273, 0.01077752117013087, 0.006928406466512702, 0.005388760585065435, 0.0023094688221709007, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0007698229407236335, 0.0007698229407236335, 0.0, 0.018475750577367205, 0.018475750577367205, 0.015396458814472672, 0.003079291762894534, 0.6235565819861432, 0.7328714395688991, 0.8229407236335643, 0.922247882986913, 0.939183987682833, 0.8929946112394149, 0.7790608160123171, 0.674364896073903, 0.48729792147806006, 0.3187066974595843, 0.1308698999230177, 0.05157813702848345, 0.9145496535796767, 0.7990762124711316, 0.03541185527328714, 0.024634334103156273, 0.023094688221709007, 0.01924557351809084, 0.024634334103156273, 0.02386451116243264, 0.9284064665127021, 0.01770592763664357, 0.9130100076982294, 0.9484218629715165, 0.9322555812163202, 0.8868360277136259, 0.008468052347959968, 0.7936874518860662, 0.8452655889145496, 0.9299461123941494, 0.9361046959199384, 0.9083910700538876, 0.8198614318706697, 0.7736720554272517, 0.008468052347959968, 0.010007698229407237, 0.006158583525789068, 0.006158583525789068, 0.010007698229407237, 0.005388760585065435, 0.006158583525789068, 0.011547344110854504, 0.011547344110854504, 0.01077752117013087, 0.09930715935334873, 0.13240954580446498, 0.8945342571208622, 0.8645111624326405, 0.04695919938414165, 0.029253271747498075, 0.01924557351809084, 0.012317167051578136, 0.016166281755196306, 0.9399538106235565, 0.8806774441878368, 0.015396458814472672, 0.02386451116243264, 0.014626635873749037, 0.01308698999230177, 0.02386451116243264, 0.016936104695919937, 0.013856812933025405, 0.024634334103156273, 0.01077752117013087, 0.011547344110854504, 0.011547344110854504, 0.013856812933025405, 0.014626635873749037, 0.016936104695919937, 0.016936104695919937, 0.01770592763664357, 0.01924557351809084, 0.02155504234026174, 0.033102386451116246, 0.05003849114703618, 0.08775981524249422, 0.13933795227097767, 0.19476520400307928, 0.28560431100846806, 0.573518090839107, 0.8029253271747498], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WRW.gap.json b/pfam_gap_rates/WRW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a490446483a63ec90a7100dc4610ff0ade038b9a
--- /dev/null
+++ b/pfam_gap_rates/WRW.gap.json
@@ -0,0 +1 @@
+{"family": "WRW", "n_seqs": 108, "length": 104, "gap_rates": [0.7314814814814815, 0.3148148148148148, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3148148148148148, 0.3148148148148148, 0.3148148148148148, 0.3148148148148148, 0.3148148148148148, 0.3148148148148148, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.3055555555555556, 0.2962962962962963, 0.2962962962962963, 0.12962962962962962, 0.12037037037037036, 0.06481481481481481, 0.037037037037037035, 0.027777777777777776, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.05555555555555555, 0.046296296296296294, 0.05555555555555555, 0.046296296296296294, 0.037037037037037035, 0.027777777777777776, 0.037037037037037035, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.037037037037037035, 0.037037037037037035, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.037037037037037035, 0.027777777777777776, 0.018518518518518517, 0.1574074074074074, 0.06481481481481481, 0.06481481481481481, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.037037037037037035, 0.06481481481481481, 0.06481481481481481, 0.09259259259259259, 0.08333333333333333, 0.08333333333333333, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.06481481481481481, 0.06481481481481481, 0.9259259259259259, 0.9259259259259259, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.09259259259259259, 0.10185185185185185, 0.1111111111111111, 0.1388888888888889, 0.1388888888888889, 0.1574074074074074, 0.17592592592592593, 0.17592592592592593, 0.18518518518518517, 0.18518518518518517, 0.19444444444444445, 0.18518518518518517, 0.19444444444444445, 0.19444444444444445, 0.21296296296296297, 0.21296296296296297, 0.21296296296296297, 0.21296296296296297, 0.21296296296296297, 0.24074074074074073, 0.23148148148148148, 0.24074074074074073, 0.32407407407407407, 0.35185185185185186, 0.39814814814814814, 0.5555555555555556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Wtap.gap.json b/pfam_gap_rates/Wtap.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e257fa921aa7138f1a894d57e96a35537c07eaf
--- /dev/null
+++ b/pfam_gap_rates/Wtap.gap.json
@@ -0,0 +1 @@
+{"family": "Wtap", "n_seqs": 177, "length": 198, "gap_rates": [0.5819209039548022, 0.3615819209039548, 0.24293785310734464, 0.21468926553672316, 0.20903954802259886, 0.2033898305084746, 0.192090395480226, 0.192090395480226, 0.1864406779661017, 0.1694915254237288, 0.15819209039548024, 0.14689265536723164, 0.14689265536723164, 0.14689265536723164, 0.14689265536723164, 0.14689265536723164, 0.14689265536723164, 0.14124293785310735, 0.14124293785310735, 0.14124293785310735, 0.14124293785310735, 0.14124293785310735, 0.13559322033898305, 0.13559322033898305, 0.9209039548022598, 0.9209039548022598, 0.9209039548022598, 0.9209039548022598, 0.9209039548022598, 0.9378531073446328, 0.9265536723163842, 0.9209039548022598, 0.9209039548022598, 0.9209039548022598, 0.9209039548022598, 0.9209039548022598, 0.12994350282485875, 0.14689265536723164, 0.14689265536723164, 0.14689265536723164, 0.14124293785310735, 0.14124293785310735, 0.14124293785310735, 0.14124293785310735, 0.13559322033898305, 0.4124293785310734, 0.14689265536723164, 0.15254237288135594, 0.1864406779661017, 0.23728813559322035, 0.9491525423728814, 0.8418079096045198, 0.384180790960452, 0.1807909604519774, 0.8926553672316384, 0.8926553672316384, 0.8983050847457628, 0.903954802259887, 0.9096045197740112, 0.9322033898305084, 0.9491525423728814, 0.9491525423728814, 0.9491525423728814, 0.943502824858757, 0.9096045197740112, 0.9096045197740112, 0.903954802259887, 0.8983050847457628, 0.8926553672316384, 0.8926553672316384, 0.11299435028248588, 0.10734463276836158, 0.10734463276836158, 0.096045197740113, 0.0903954802259887, 0.0847457627118644, 0.07909604519774012, 0.07909604519774012, 0.07344632768361582, 0.06779661016949153, 0.903954802259887, 0.06779661016949153, 0.062146892655367235, 0.062146892655367235, 0.05649717514124294, 0.05649717514124294, 0.05649717514124294, 0.04519774011299435, 0.04519774011299435, 0.03954802259887006, 0.04519774011299435, 0.03954802259887006, 0.03954802259887006, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05649717514124294, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.07344632768361582, 0.096045197740113, 0.10734463276836158, 0.10734463276836158, 0.12994350282485875, 0.12994350282485875, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.13559322033898305, 0.11299435028248588, 0.10734463276836158, 0.0847457627118644, 0.07909604519774012, 0.03389830508474576, 0.9322033898305084, 0.9322033898305084, 0.9378531073446328, 0.943502824858757, 0.943502824858757, 0.9491525423728814, 0.943502824858757, 0.9378531073446328, 0.9322033898305084, 0.9322033898305084, 0.9265536723163842, 0.05084745762711865, 0.05649717514124294, 0.05084745762711865, 0.05084745762711865, 0.04519774011299435, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03954802259887006, 0.03954802259887006, 0.03389830508474576, 0.07344632768361582, 0.07909604519774012, 0.04519774011299435, 0.04519774011299435, 0.03954802259887006, 0.04519774011299435, 0.04519774011299435, 0.03954802259887006, 0.04519774011299435, 0.04519774011299435, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05649717514124294, 0.06779661016949153, 0.07344632768361582, 0.07344632768361582, 0.07909604519774012, 0.07909604519774012, 0.0903954802259887, 0.0903954802259887, 0.096045197740113, 0.096045197740113, 0.10734463276836158, 0.11864406779661017, 0.12429378531073447, 0.12429378531073447, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.13559322033898305, 0.1977401129943503, 0.21468926553672316, 0.2768361581920904, 0.4576271186440678], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YGGT.gap.json b/pfam_gap_rates/YGGT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f23e7668a507d5c1d55b5390c10fb64fe2a89d7
--- /dev/null
+++ b/pfam_gap_rates/YGGT.gap.json
@@ -0,0 +1 @@
+{"family": "YGGT", "n_seqs": 1910, "length": 85, "gap_rates": [0.9298429319371728, 0.3968586387434555, 0.13769633507853404, 0.06806282722513089, 0.03717277486910995, 0.022513089005235604, 0.019895287958115182, 0.01832460732984293, 0.01780104712041885, 0.015183246073298429, 0.014659685863874346, 0.013089005235602094, 0.012565445026178011, 0.012041884816753926, 0.012041884816753926, 0.010471204188481676, 0.005235602094240838, 0.016230366492146597, 0.005759162303664921, 0.6109947643979058, 0.7738219895287958, 0.8167539267015707, 0.8272251308900523, 0.8287958115183246, 0.8240837696335078, 0.806282722513089, 0.7554973821989529, 0.08272251308900523, 0.04502617801047121, 0.033507853403141365, 0.02198952879581152, 0.020942408376963352, 0.009424083769633508, 0.0062827225130890054, 0.0062827225130890054, 0.020942408376963352, 0.019895287958115182, 0.01832460732984293, 0.017277486910994764, 0.0015706806282722514, 0.0020942408376963353, 0.0015706806282722514, 0.0010471204188481676, 0.0010471204188481676, 0.0010471204188481676, 0.0015706806282722514, 0.0020942408376963353, 0.0005235602094240838, 0.0010471204188481676, 0.0010471204188481676, 0.0005235602094240838, 0.0036649214659685864, 0.0010471204188481676, 0.0010471204188481676, 0.008376963350785341, 0.009424083769633508, 0.737696335078534, 0.9465968586387434, 0.8842931937172774, 0.30261780104712044, 0.008900523560209424, 0.07801047120418848, 0.006806282722513089, 0.7989528795811518, 0.8439790575916231, 0.5345549738219896, 0.004188481675392671, 0.0036649214659685864, 0.0036649214659685864, 0.004188481675392671, 0.0036649214659685864, 0.0036649214659685864, 0.0036649214659685864, 0.0036649214659685864, 0.004188481675392671, 0.004188481675392671, 0.004188481675392671, 0.005235602094240838, 0.0062827225130890054, 0.014659685863874346, 0.02931937172774869, 0.0612565445026178, 0.2293193717277487, 0.3670157068062827, 0.6654450261780105], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YIF1.gap.json b/pfam_gap_rates/YIF1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e57655d60c7a4215d2f4ebdd8bd397d537f10fe2
--- /dev/null
+++ b/pfam_gap_rates/YIF1.gap.json
@@ -0,0 +1 @@
+{"family": "YIF1", "n_seqs": 399, "length": 274, "gap_rates": [0.731829573934837, 0.5513784461152882, 0.5012531328320802, 0.43609022556390975, 0.41854636591478694, 0.40350877192982454, 0.37593984962406013, 0.3684210526315789, 0.3558897243107769, 0.2556390977443609, 0.19047619047619047, 0.18796992481203006, 0.18295739348370926, 0.16541353383458646, 0.15288220551378445, 0.15037593984962405, 0.14786967418546365, 0.14786967418546365, 0.15538847117794485, 0.15037593984962405, 0.15037593984962405, 0.23809523809523808, 0.23057644110275688, 0.22807017543859648, 0.23308270676691728, 0.13784461152882205, 0.13032581453634084, 0.11528822055137844, 0.13533834586466165, 0.12781954887218044, 0.12781954887218044, 0.12531328320802004, 0.8897243107769424, 0.17042606516290726, 0.2606516290726817, 0.19047619047619047, 0.09523809523809523, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 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\ No newline at end of file
diff --git a/pfam_gap_rates/YPEB.gap.json b/pfam_gap_rates/YPEB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d03f748c3fb4208bf10fd86cdcc141dc2be67715
--- /dev/null
+++ b/pfam_gap_rates/YPEB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YccV-like.gap.json b/pfam_gap_rates/YccV-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b554fa979d46bb93abc060f90b8e79f90b35f1c2
--- /dev/null
+++ b/pfam_gap_rates/YccV-like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ycf1.gap.json b/pfam_gap_rates/Ycf1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..129edd00abafc511cb216759a7f62b0e1d1d6cd2
--- /dev/null
+++ b/pfam_gap_rates/Ycf1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YcgL.gap.json b/pfam_gap_rates/YcgL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90cb93fd039beb434ce4a7cdaf76830d0703aba9
--- /dev/null
+++ b/pfam_gap_rates/YcgL.gap.json
@@ -0,0 +1 @@
+{"family": "YcgL", "n_seqs": 148, "length": 73, "gap_rates": [0.30405405405405406, 0.07432432432432433, 0.060810810810810814, 0.060810810810810814, 0.0472972972972973, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.02027027027027027, 0.02027027027027027, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.060810810810810814, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006756756756756757, 0.013513513513513514, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.0472972972972973, 0.10135135135135136], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YdjC.gap.json b/pfam_gap_rates/YdjC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa8d26f63d23ae548ee588accd22988ea8cb2570
--- /dev/null
+++ b/pfam_gap_rates/YdjC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YflT.gap.json b/pfam_gap_rates/YflT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..080ffa8583e042f69a909b10a6e54aaf055435aa
--- /dev/null
+++ b/pfam_gap_rates/YflT.gap.json
@@ -0,0 +1 @@
+{"family": "YflT", "n_seqs": 218, "length": 145, "gap_rates": [0.3577981651376147, 0.13761467889908258, 0.045871559633027525, 0.027522935779816515, 0.01834862385321101, 0.01834862385321101, 0.013761467889908258, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.013761467889908258, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.013761467889908258, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0, 0.0, 0.0, 0.0, 0.0, 0.13761467889908258, 0.022935779816513763, 0.0045871559633027525, 0.009174311926605505, 0.01834862385321101, 0.03211009174311927, 0.027522935779816515, 0.03211009174311927, 0.03211009174311927, 0.03211009174311927, 0.03669724770642202, 0.04128440366972477, 0.045871559633027525, 0.05504587155963303, 0.05504587155963303, 0.0963302752293578, 0.20642201834862386, 0.20642201834862386, 0.7064220183486238, 0.7660550458715596, 0.8623853211009175, 0.9128440366972477, 0.9220183486238532, 0.9357798165137615, 0.944954128440367, 0.926605504587156, 0.9174311926605505, 0.8807339449541285, 0.7981651376146789, 0.7293577981651376, 0.6972477064220184, 0.12844036697247707, 0.14220183486238533, 0.1559633027522936, 0.1559633027522936, 0.16055045871559634, 0.1651376146788991, 0.1651376146788991, 0.1651376146788991, 0.16055045871559634, 0.1559633027522936, 0.1559633027522936, 0.1559633027522936, 0.1743119266055046, 0.7981651376146789, 0.8073394495412844, 0.8119266055045872, 0.8302752293577982, 0.8348623853211009, 0.8348623853211009, 0.8348623853211009, 0.8348623853211009, 0.8348623853211009, 0.8348623853211009, 0.8440366972477065, 0.8532110091743119, 0.8761467889908257, 0.8807339449541285, 0.9403669724770642, 0.9495412844036697, 0.8807339449541285, 0.8807339449541285, 0.8577981651376146, 0.8532110091743119, 0.8394495412844036, 0.8348623853211009, 0.8348623853211009, 0.8348623853211009, 0.8348623853211009, 0.8348623853211009, 0.8348623853211009, 0.8211009174311926, 0.8073394495412844, 0.8027522935779816, 0.7798165137614679, 0.1559633027522936, 0.1651376146788991, 0.14220183486238533, 0.14220183486238533, 0.14220183486238533, 0.15137614678899083, 0.19724770642201836, 0.9357798165137615, 0.16055045871559634, 0.16055045871559634, 0.1559633027522936, 0.15137614678899083, 0.15137614678899083, 0.14678899082568808, 0.15137614678899083, 0.15137614678899083, 0.15137614678899083, 0.15137614678899083, 0.15137614678899083, 0.15137614678899083, 0.15137614678899083, 0.1559633027522936, 0.16055045871559634, 0.1559633027522936, 0.1559633027522936, 0.1559633027522936, 0.1559633027522936, 0.1559633027522936, 0.1559633027522936, 0.1651376146788991, 0.16972477064220184, 0.16972477064220184, 0.1743119266055046, 0.1834862385321101, 0.47706422018348627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Yippee-Mis18.gap.json b/pfam_gap_rates/Yippee-Mis18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e78b542b16675d1868dd0e16a566bf7a8eb4204
--- /dev/null
+++ b/pfam_gap_rates/Yippee-Mis18.gap.json
@@ -0,0 +1 @@
+{"family": "Yippee-Mis18", "n_seqs": 955, "length": 137, "gap_rates": [0.9319371727748691, 0.43664921465968587, 0.11204188481675392, 0.07329842931937172, 0.07329842931937172, 0.07853403141361257, 0.07015706806282722, 0.07015706806282722, 0.0712041884816754, 0.07015706806282722, 0.07015706806282722, 0.06910994764397906, 0.06806282722513089, 0.06910994764397906, 0.06910994764397906, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.27853403141361255, 0.7413612565445026, 0.7643979057591623, 0.7507853403141361, 0.2900523560209424, 0.2638743455497382, 0.06806282722513089, 0.1193717277486911, 0.11727748691099477, 0.060732984293193716, 0.45968586387434557, 0.46282722513089003, 0.4837696335078534, 0.6387434554973822, 0.8052356020942408, 0.8219895287958116, 0.9057591623036649, 0.9277486910994764, 0.93717277486911, 0.9403141361256544, 0.9465968586387434, 0.9486910994764398, 0.9445026178010472, 0.9392670157068063, 0.930890052356021, 0.9235602094240838, 0.8356020942408376, 0.8115183246073299, 0.6638743455497382, 0.6356020942408377, 0.46596858638743455, 0.4617801047120419, 0.4481675392670157, 0.05654450261780105, 0.05863874345549738, 0.04712041884816754, 0.04397905759162304, 0.04293193717277487, 0.03664921465968586, 0.0356020942408377, 0.039790575916230364, 0.032460732984293195, 0.05130890052356021, 0.3256544502617801, 0.025130890052356022, 0.019895287958115182, 0.02198952879581152, 0.028272251308900525, 0.024083769633507852, 0.020942408376963352, 0.04502617801047121, 0.05340314136125655, 0.05340314136125655, 0.05549738219895288, 0.06701570680628273, 0.7267015706806282, 0.4774869109947644, 0.450261780104712, 0.7643979057591623, 0.4513089005235602, 0.4387434554973822, 0.9277486910994764, 0.9445026178010472, 0.9183246073298429, 0.4083769633507853, 0.38952879581151834, 0.387434554973822, 0.38534031413612563, 0.37801047120418846, 0.0020942408376963353, 0.0020942408376963353, 0.0020942408376963353, 0.0020942408376963353, 0.016753926701570682, 0.0020942408376963353, 0.0020942408376963353, 0.0020942408376963353, 0.0020942408376963353, 0.0020942408376963353, 0.0020942408376963353, 0.0020942408376963353, 0.0020942408376963353, 0.0020942408376963353, 0.005235602094240838, 0.0062827225130890054, 0.009424083769633508, 0.013612565445026177, 0.02198952879581152, 0.025130890052356022, 0.2157068062827225, 0.030366492146596858, 0.031413612565445025, 0.03769633507853403, 0.039790575916230364, 0.0387434554973822, 0.13612565445026178, 0.05235602094240838, 0.05863874345549738, 0.06282722513089005, 0.07329842931937172, 0.07643979057591622, 0.08481675392670157, 0.10471204188481675, 0.12774869109947645, 0.17382198952879582, 0.3486910994764398, 0.5685863874345549, 0.675392670157068, 0.7225130890052356, 0.7560209424083769, 0.7706806282722513, 0.7916230366492146, 0.8146596858638744, 0.8439790575916231, 0.8701570680628272, 0.8984293193717278, 0.930890052356021], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YukD.gap.json b/pfam_gap_rates/YukD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38e495c9b9afc4b792da56eb0a032cc5d1919112
--- /dev/null
+++ b/pfam_gap_rates/YukD.gap.json
@@ -0,0 +1 @@
+{"family": "YukD", "n_seqs": 270, "length": 89, "gap_rates": [0.674074074074074, 0.22592592592592592, 0.16296296296296298, 0.12222222222222222, 0.1, 0.0962962962962963, 0.09259259259259259, 0.9333333333333333, 0.07037037037037037, 0.05185185185185185, 0.05185185185185185, 0.044444444444444446, 0.9037037037037037, 0.9148148148148149, 0.9, 0.040740740740740744, 0.037037037037037035, 0.037037037037037035, 0.022222222222222223, 0.022222222222222223, 0.014814814814814815, 0.011111111111111112, 0.011111111111111112, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.018518518518518517, 0.7444444444444445, 0.7925925925925926, 0.8222222222222222, 0.9222222222222223, 0.8666666666666667, 0.8074074074074075, 0.7814814814814814, 0.5666666666666667, 0.48518518518518516, 0.26666666666666666, 0.18518518518518517, 0.05925925925925926, 0.018518518518518517, 0.014814814814814815, 0.007407407407407408, 0.003703703703703704, 0.003703703703703704, 0.003703703703703704, 0.014814814814814815, 0.003703703703703704, 0.003703703703703704, 0.003703703703703704, 0.003703703703703704, 0.003703703703703704, 0.003703703703703704, 0.003703703703703704, 0.003703703703703704, 0.7592592592592593, 0.014814814814814815, 0.018518518518518517, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.02962962962962963, 0.06296296296296296, 0.17407407407407408], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ZapA.gap.json b/pfam_gap_rates/ZapA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e71868ced871f375774275c601d3de83e60fe2b9
--- /dev/null
+++ b/pfam_gap_rates/ZapA.gap.json
@@ -0,0 +1 @@
+{"family": "ZapA", "n_seqs": 1239, "length": 115, "gap_rates": [0.36238902340597257, 0.11702986279257466, 0.0774818401937046, 0.03954802259887006, 0.020177562550443905, 0.016142050040355124, 0.014527845036319613, 0.014527845036319613, 0.014527845036319613, 0.013720742534301856, 0.013720742534301856, 0.008071025020177562, 0.00887812752219532, 0.00645682001614205, 0.00645682001614205, 0.005649717514124294, 0.42776432606941084, 0.053268765133171914, 0.008071025020177562, 0.004842615012106538, 0.004842615012106538, 0.004035512510088781, 0.002421307506053269, 0.002421307506053269, 0.0016142050040355124, 0.0016142050040355124, 0.0016142050040355124, 0.0008071025020177562, 0.0008071025020177562, 0.0008071025020177562, 0.0008071025020177562, 0.0008071025020177562, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0016142050040355124, 0.003228410008071025, 0.020177562550443905, 0.9281678773204197, 0.9047619047619048, 0.031476997578692496, 0.008071025020177562, 0.00645682001614205, 0.003228410008071025, 0.004035512510088781, 0.0, 0.0, 0.0, 0.0, 0.0008071025020177562, 0.0008071025020177562, 0.0008071025020177562, 0.0016142050040355124, 0.0016142050040355124, 0.0016142050040355124, 0.002421307506053269, 0.004035512510088781, 0.00645682001614205, 0.00645682001614205, 0.012106537530266344, 0.013720742534301856, 0.01937046004842615, 0.020177562550443905, 0.01937046004842615, 0.025020177562550445, 0.08797417271993543, 0.08555286521388217, 0.07021791767554479, 0.08151735270379339, 0.10815173527037934, 0.16142050040355124, 0.19693301049233253, 0.19693301049233253, 0.7037933817594835, 0.7255851493139629, 0.7457627118644068, 0.7812752219531881, 0.7917675544794189, 0.8095238095238095, 0.8256658595641646, 0.8684422921711057, 0.8732849071832123, 0.8918482647296206, 0.9265536723163842, 0.933817594834544, 0.9378531073446328, 0.930589184826473, 0.8958837772397095, 0.8886198547215496, 0.8716707021791767, 0.8635996771589992, 0.8216303470540759, 0.8022598870056498, 0.7893462469733656, 0.7522195318805488, 0.7368845843422115, 0.7167070217917676, 0.6836158192090396, 0.46569814366424533, 0.5480225988700564, 0.5447941888619855, 0.31799838579499595, 0.3188054882970137, 0.32929782082324455, 0.3640032284100081, 0.38579499596448746, 0.41646489104116224, 0.480225988700565, 0.5633575464083939, 0.6698950766747377, 0.8329297820823245], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zn-ribbon_8.gap.json b/pfam_gap_rates/Zn-ribbon_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b27e48ab4c33ac5e32b65801650def75e9355cf0
--- /dev/null
+++ b/pfam_gap_rates/Zn-ribbon_8.gap.json
@@ -0,0 +1 @@
+{"family": "Zn-ribbon_8", "n_seqs": 1136, "length": 43, "gap_rates": [0.008802816901408451, 0.0035211267605633804, 0.0008802816901408451, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0017605633802816902, 0.018485915492957746, 0.0, 0.09419014084507042, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.025528169014084508, 0.007922535211267605, 0.0044014084507042256, 0.8943661971830986, 0.032570422535211266, 0.07658450704225352, 0.058098591549295774, 0.002640845070422535, 0.0, 0.0, 0.7508802816901409, 0.0, 0.006161971830985915, 0.0017605633802816902, 0.0035211267605633804, 0.0035211267605633804, 0.0044014084507042256, 0.47007042253521125, 0.011443661971830986, 0.014084507042253521, 0.022007042253521125, 0.037852112676056336, 0.09154929577464789, 0.4084507042253521], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zn_Tnp_IS1595.gap.json b/pfam_gap_rates/Zn_Tnp_IS1595.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81ef06fa7bc02a61ed3bc7401c9db3717f1eee5e
--- /dev/null
+++ b/pfam_gap_rates/Zn_Tnp_IS1595.gap.json
@@ -0,0 +1 @@
+{"family": "Zn_Tnp_IS1595", "n_seqs": 336, "length": 61, "gap_rates": [0.7440476190476191, 0.19940476190476192, 0.13095238095238096, 0.10416666666666667, 0.09226190476190477, 0.08928571428571429, 0.08333333333333333, 0.07142857142857142, 0.06845238095238096, 0.05952380952380952, 0.047619047619047616, 0.044642857142857144, 0.03571428571428571, 0.03273809523809524, 0.02976190476190476, 0.026785714285714284, 0.023809523809523808, 0.008928571428571428, 0.9196428571428571, 0.9464285714285714, 0.8779761904761905, 0.005952380952380952, 0.0, 0.0, 0.0, 0.0, 0.002976190476190476, 0.002976190476190476, 0.008928571428571428, 0.008928571428571428, 0.875, 0.9315476190476191, 0.6785714285714286, 0.01488095238095238, 0.017857142857142856, 0.026785714285714284, 0.020833333333333332, 0.01488095238095238, 0.020833333333333332, 0.017857142857142856, 0.6309523809523809, 0.7529761904761905, 0.8422619047619048, 0.9077380952380952, 0.9196428571428571, 0.8660714285714286, 0.8184523809523809, 0.7113095238095238, 0.5773809523809523, 0.13988095238095238, 0.017857142857142856, 0.008928571428571428, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.01488095238095238, 0.017857142857142856, 0.01488095238095238, 0.03571428571428571, 0.09523809523809523, 0.49702380952380953], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zn_ribbon_recom.gap.json b/pfam_gap_rates/Zn_ribbon_recom.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c9d08f4e7a30581f873a4b6d65f2b1f72e1f040
--- /dev/null
+++ b/pfam_gap_rates/Zn_ribbon_recom.gap.json
@@ -0,0 +1 @@
+{"family": "Zn_ribbon_recom", "n_seqs": 2563, "length": 79, "gap_rates": [0.30628170113148656, 0.05891533359344518, 0.0296527506827936, 0.017557549746390948, 0.00702301989855638, 0.004291845493562232, 0.0039016777214202106, 0.005852516582130316, 0.01404603979711276, 0.008973858759266484, 0.0027311744049941474, 0.0027311744049941474, 0.0027311744049941474, 0.0027311744049941474, 0.0019508388607101053, 0.0019508388607101053, 0.0011705033164260631, 0.7928209129925868, 0.8977760436987905, 0.8454935622317596, 0.7467811158798283, 0.0007803355442840422, 0.03160358954350371, 0.03199375731564573, 0.14280140460397972, 0.6387046429964884, 0.889192352711666, 0.7557549746390948, 0.4888802184939524, 0.06281701131486539, 0.07881388997268826, 0.030433086227077643, 0.7093250097541943, 0.8376902067889193, 0.9071400702301989, 0.9399141630901288, 0.9285992976980102, 0.8825595005852517, 0.7889192352711666, 0.6273897776043699, 0.006632852126414358, 0.0007803355442840422, 0.0003901677721420211, 0.0015606710885680843, 0.0007803355442840422, 0.0015606710885680843, 0.0019508388607101053, 0.009754194303550527, 0.14124073351541164, 0.08778774873195475, 0.03901677721420211, 0.0444791260241904, 0.3425673039406945, 0.8923136948888022, 0.9282091299258681, 0.7214202106905969, 0.027311744049941473, 0.758486149044089, 0.016387046429964885, 0.01404603979711276, 0.034724931720639875, 0.04525946156847444, 0.760827155676941, 0.020678891923527117, 0.01911822083495903, 0.02145922746781116, 0.02262973078423722, 0.02301989855637924, 0.02614124073351541, 0.030042918454935622, 0.048770971517752636, 0.060866172454155286, 0.0870074131876707, 0.10846664065548185, 0.14514241123683183, 0.1907920405774483, 0.2664845883730004, 0.3757315645727663, 0.8006242684354272], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ZnuA.gap.json b/pfam_gap_rates/ZnuA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9244af682900d7316c1800b869b58197279b1f6
--- /dev/null
+++ b/pfam_gap_rates/ZnuA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/bHLH-MYC_N.gap.json b/pfam_gap_rates/bHLH-MYC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27185acbc80a26ef389f916fe960f7f64621fa0c
--- /dev/null
+++ b/pfam_gap_rates/bHLH-MYC_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/bPH_5.gap.json b/pfam_gap_rates/bPH_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99654fc032ed0e4aed180e0723d76bfdde527ae6
--- /dev/null
+++ b/pfam_gap_rates/bPH_5.gap.json
@@ -0,0 +1 @@
+{"family": "bPH_5", "n_seqs": 178, "length": 113, "gap_rates": [0.8595505617977528, 0.5393258426966292, 0.29213483146067415, 0.20224719101123595, 0.16853932584269662, 0.15168539325842698, 0.11235955056179775, 0.10112359550561797, 0.10112359550561797, 0.10112359550561797, 0.09550561797752809, 0.09550561797752809, 0.08426966292134831, 0.08426966292134831, 0.07865168539325842, 0.08426966292134831, 0.06741573033707865, 0.8932584269662921, 0.797752808988764, 0.07865168539325842, 0.06179775280898876, 0.05056179775280899, 0.05056179775280899, 0.03932584269662921, 0.033707865168539325, 0.9325842696629213, 0.9382022471910112, 0.949438202247191, 0.949438202247191, 0.9382022471910112, 0.9382022471910112, 0.9269662921348315, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.028089887640449437, 0.028089887640449437, 0.028089887640449437, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.016853932584269662, 0.02247191011235955, 0.08426966292134831, 0.7921348314606742, 0.9325842696629213, 0.6685393258426966, 0.05056179775280899, 0.011235955056179775, 0.0056179775280898875, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.016853932584269662, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.011235955056179775, 0.016853932584269662, 0.011235955056179775, 0.02247191011235955, 0.033707865168539325, 0.02247191011235955, 0.0056179775280898875, 0.011235955056179775, 0.011235955056179775, 0.0056179775280898875, 0.0, 0.0056179775280898875, 0.0, 0.0, 0.0, 0.0, 0.6235955056179775, 0.028089887640449437, 0.0, 0.0, 0.0, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.016853932584269662, 0.02247191011235955, 0.028089887640449437, 0.7359550561797753, 0.02247191011235955, 0.033707865168539325, 0.033707865168539325, 0.0449438202247191, 0.06741573033707865, 0.12921348314606743, 0.14606741573033707, 0.14606741573033707, 0.16853932584269662, 0.19101123595505617, 0.21348314606741572, 0.23595505617977527, 0.29775280898876405, 0.3146067415730337, 0.33146067415730335, 0.37640449438202245, 0.39325842696629215, 0.48314606741573035, 0.6067415730337079, 0.7696629213483146], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/eIF3_N.gap.json b/pfam_gap_rates/eIF3_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed51b4a7901e9193aaf7e49b095d7eb235345d4a
--- /dev/null
+++ b/pfam_gap_rates/eIF3_N.gap.json
@@ -0,0 +1 @@
+{"family": "eIF3_N", "n_seqs": 303, "length": 142, "gap_rates": [0.21122112211221122, 0.1419141914191419, 0.0924092409240924, 0.08250825082508251, 0.07260726072607261, 0.06930693069306931, 0.066006600660066, 0.0627062706270627, 0.0627062706270627, 0.0594059405940594, 0.0594059405940594, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.0627062706270627, 0.0858085808580858, 0.0858085808580858, 0.07920792079207921, 0.066006600660066, 0.056105610561056105, 0.0594059405940594, 0.052805280528052806, 0.0627062706270627, 0.8613861386138614, 0.8976897689768977, 0.9075907590759076, 0.8910891089108911, 0.858085808580858, 0.0594059405940594, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.033003300330033, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.0429042904290429, 0.0429042904290429, 0.0462046204620462, 0.052805280528052806, 0.052805280528052806, 0.1254125412541254, 0.1551155115511551, 0.2145214521452145, 0.1485148514851485, 0.0858085808580858, 0.066006600660066, 0.0429042904290429, 0.039603960396039604, 0.039603960396039604, 0.033003300330033, 0.0231023102310231, 0.0297029702970297, 0.036303630363036306, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.039603960396039604, 0.039603960396039604, 0.036303630363036306, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.052805280528052806, 0.04950495049504951, 0.0462046204620462, 0.04950495049504951, 0.052805280528052806, 0.066006600660066, 0.052805280528052806, 0.7227722772277227, 0.9471947194719472, 0.9240924092409241, 0.6831683168316832, 0.056105610561056105, 0.0627062706270627, 0.07260726072607261, 0.07260726072607261, 0.07260726072607261, 0.07590759075907591, 0.07590759075907591, 0.07590759075907591, 0.07260726072607261, 0.0891089108910891, 0.07260726072607261, 0.07260726072607261, 0.0858085808580858, 0.08250825082508251, 0.07590759075907591, 0.07920792079207921, 0.0858085808580858, 0.0858085808580858, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.1485148514851485, 0.37623762376237624], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/fn3_2.gap.json b/pfam_gap_rates/fn3_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bbaf5481dc610cc9a7c3c347400b7cfaf3c2a9db
--- /dev/null
+++ b/pfam_gap_rates/fn3_2.gap.json
@@ -0,0 +1 @@
+{"family": "fn3_2", "n_seqs": 131, "length": 89, "gap_rates": [0.8854961832061069, 0.08396946564885496, 0.061068702290076333, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.030534351145038167, 0.015267175572519083, 0.015267175572519083, 0.030534351145038167, 0.05343511450381679, 0.05343511450381679, 0.061068702290076333, 0.015267175572519083, 0.015267175572519083, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.015267175572519083], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/gerPA.gap.json b/pfam_gap_rates/gerPA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4285c9079650147248f3505e622f60e5f33ef5a0
--- /dev/null
+++ b/pfam_gap_rates/gerPA.gap.json
@@ -0,0 +1 @@
+{"family": "gerPA", "n_seqs": 184, "length": 76, "gap_rates": [0.22282608695652173, 0.21739130434782608, 0.9021739130434783, 0.8858695652173914, 0.11413043478260869, 0.07065217391304347, 0.03804347826086957, 0.9456521739130435, 0.016304347826086956, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.09239130434782608, 0.07608695652173914, 0.0, 0.19021739130434784, 0.005434782608695652, 0.0, 0.0, 0.0, 0.005434782608695652, 0.0, 0.0, 0.0, 0.0, 0.005434782608695652, 0.0, 0.0, 0.005434782608695652, 0.005434782608695652, 0.0, 0.0, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.010869565217391304, 0.010869565217391304, 0.03260869565217391, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.021739130434782608, 0.2554347826086957, 0.1956521739130435, 0.02717391304347826, 0.03260869565217391, 0.02717391304347826, 0.2554347826086957, 0.9456521739130435, 0.059782608695652176, 0.03804347826086957, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03804347826086957, 0.03804347826086957, 0.043478260869565216, 0.04891304347826087, 0.043478260869565216, 0.03804347826086957, 0.043478260869565216, 0.059782608695652176, 0.07608695652173914, 0.07608695652173914, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.11413043478260869, 0.15760869565217392, 0.21195652173913043, 0.33695652173913043, 0.42391304347826086, 0.4782608695652174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/hemP.gap.json b/pfam_gap_rates/hemP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ec28c861bcd43b761baa29e21ab83d7ffc921e3
--- /dev/null
+++ b/pfam_gap_rates/hemP.gap.json
@@ -0,0 +1 @@
+{"family": "hemP", "n_seqs": 190, "length": 37, "gap_rates": [0.5842105263157895, 0.08947368421052632, 0.06315789473684211, 0.03684210526315789, 0.021052631578947368, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.05263157894736842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/mRNA_triPase.gap.json b/pfam_gap_rates/mRNA_triPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca53e8279d8aa33dcceffe72f8c2a99914603f00
--- /dev/null
+++ b/pfam_gap_rates/mRNA_triPase.gap.json
@@ -0,0 +1 @@
+{"family": "mRNA_triPase", "n_seqs": 213, "length": 301, "gap_rates": [0.460093896713615, 0.39436619718309857, 0.36619718309859156, 0.3568075117370892, 0.352112676056338, 0.352112676056338, 0.3380281690140845, 0.3380281690140845, 0.3286384976525822, 0.323943661971831, 0.3145539906103286, 0.3145539906103286, 0.3427230046948357, 0.352112676056338, 0.4460093896713615, 0.41784037558685444, 0.38967136150234744, 0.6572769953051644, 0.7276995305164319, 0.7417840375586855, 0.9342723004694836, 0.9389671361502347, 0.9107981220657277, 0.7323943661971831, 0.6948356807511737, 0.596244131455399, 0.3286384976525822, 0.3004694835680751, 0.27699530516431925, 0.2535211267605634, 0.3145539906103286, 0.4225352112676056, 0.24413145539906103, 0.19248826291079812, 0.1784037558685446, 0.1784037558685446, 0.1784037558685446, 0.1784037558685446, 0.17370892018779344, 0.17370892018779344, 0.17370892018779344, 0.17370892018779344, 0.17370892018779344, 0.17370892018779344, 0.17370892018779344, 0.17370892018779344, 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\ No newline at end of file
diff --git a/pfam_gap_rates/malic.gap.json b/pfam_gap_rates/malic.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61614ba67d27baeb28610170ad1c5d3785641db6
--- /dev/null
+++ b/pfam_gap_rates/malic.gap.json
@@ -0,0 +1 @@
+{"family": "malic", "n_seqs": 3437, "length": 184, "gap_rates": [0.8370672097759674, 0.4553389583939482, 0.2784405004364271, 0.24818155368053535, 0.2266511492580739, 0.2100669188245563, 0.19959266802443992, 0.1894093686354379, 0.183590340413151, 0.1763165551352924, 0.17078847832411986, 0.16526040151294732, 0.16205993599068955, 0.1623508874018039, 0.16846086703520513, 0.6688972941518766, 0.6491125981961012, 0.13878382310154205, 0.13674716322374164, 0.13441955193482688, 0.13296479487925517, 0.13209194064591212, 0.13005528076811174, 0.1297643293569974, 0.12947337794588304, 0.12947337794588304, 0.12947337794588304, 0.1297643293569974, 0.12947337794588304, 0.1297643293569974, 0.1297643293569974, 0.1306371835903404, 0.13034623217922606, 0.1306371835903404, 0.1297643293569974, 0.1297643293569974, 0.1297643293569974, 0.1297643293569974, 0.12947337794588304, 0.1291824265347687, 0.1291824265347687, 0.12860052371254, 0.12889147512365434, 0.6767529822519639, 0.1297643293569974, 0.12830957230142567, 0.12830957230142567, 0.12860052371254, 0.12889147512365434, 0.12830957230142567, 0.12801862089031132, 0.12860052371254, 0.6790805935408787, 0.6787896421297643, 0.6782077393075356, 0.6790805935408787, 0.6779167878964213, 0.6773348850741926, 0.6767529822519639, 0.6764620308408495, 0.6764620308408495, 0.6761710794297352, 0.6752982251963922, 0.9066045970322956, 0.67849869071865, 0.6761710794297352, 0.6764620308408495, 0.6735525167297062, 0.6720977596741344, 0.11958102996799534, 0.11987198137910969, 0.11958102996799534, 0.11987198137910969, 0.11958102996799534, 0.11899912714576666, 0.11841722432353798, 0.11870817573465231, 0.11958102996799534, 0.11958102996799534, 0.11899912714576666, 0.12045388420133837, 0.12074483561245272, 0.12016293279022404, 0.12045388420133837, 0.1213267384346814, 0.12161768984579575, 0.44311899912714575, 0.1245272039569392, 0.12481815536805353, 0.12540005819028222, 0.1213267384346814, 0.12103578702356707, 0.12103578702356707, 0.12045388420133837, 0.12016293279022404, 0.12045388420133837, 0.12016293279022404, 0.12016293279022404, 0.11987198137910969, 0.11958102996799534, 0.11958102996799534, 0.12016293279022404, 0.12103578702356707, 0.12016293279022404, 0.12161768984579575, 0.12045388420133837, 0.12103578702356707, 0.12074483561245272, 0.6787896421297643, 0.6764620308408495, 0.6758801280186209, 0.12249054407913879, 0.1219086412569101, 0.12045388420133837, 0.12074483561245272, 0.12045388420133837, 0.1213267384346814, 0.12860052371254, 0.14198428862379983, 0.15915042187954612, 0.6648239743962758, 0.6543497235961594, 0.6630782659295897, 0.6665696828629619, 0.6729706139074775, 0.6744253709630492, 0.6758801280186209, 0.6764620308408495, 0.6767529822519639, 0.6764620308408495, 0.6755891766075065, 0.6758801280186209, 0.6738434681408205, 0.6735525167297062, 0.6735525167297062, 0.6738434681408205, 0.6738434681408205, 0.6741344195519349, 0.6735525167297062, 0.6729706139074775, 0.6732615653185918, 0.6712249054407914, 0.6703520512074483, 0.6712249054407914, 0.6720977596741344, 0.6671515856851906, 0.6083794006400931, 0.14722141402385802, 0.13674716322374164, 0.1318009892347978, 0.13092813500145475, 0.1306371835903404, 0.1297643293569974, 0.13005528076811174, 0.1297643293569974, 0.1297643293569974, 0.1291824265347687, 0.1291824265347687, 0.12860052371254, 0.1291824265347687, 0.3564154786150713, 0.13034623217922606, 0.13034623217922606, 0.13034623217922606, 0.13034623217922606, 0.13092813500145475, 0.13092813500145475, 0.13092813500145475, 0.13151003782368345, 0.1312190864125691, 0.1312190864125691, 0.1312190864125691, 0.1318009892347978, 0.13238289205702647, 0.14198428862379983, 0.1425661914460285, 0.13471050334594123, 0.13471050334594123, 0.13500145475705558, 0.13616526040151294, 0.1384928716904277, 0.15827756764620307, 0.1908641256910096, 0.34885074192609833], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/rve.gap.json b/pfam_gap_rates/rve.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3ad7fcb7503bed526df0d79591d373024c24eef
--- /dev/null
+++ b/pfam_gap_rates/rve.gap.json
@@ -0,0 +1 @@
+{"family": "rve", "n_seqs": 5000, "length": 142, "gap_rates": [0.7508, 0.5654, 0.4268, 0.3574, 0.2874, 0.2514, 0.223, 0.2074, 0.1712, 0.1646, 0.1638, 0.1614, 0.9416, 0.6386, 0.1648, 0.1616, 0.1616, 0.4998, 0.3638, 0.2472, 0.2098, 0.185, 0.2868, 0.8336, 0.899, 0.9456, 0.9264, 0.8624, 0.8178, 0.1616, 0.1008, 0.093, 0.0896, 0.0858, 0.0834, 0.0764, 0.073, 0.0722, 0.071, 0.0682, 0.0672, 0.066, 0.0652, 0.0638, 0.0634, 0.0626, 0.061, 0.0596, 0.057, 0.0542, 0.053, 0.0528, 0.4634, 0.054, 0.0496, 0.0442, 0.0412, 0.0406, 0.037, 0.0352, 0.0344, 0.0336, 0.0326, 0.0412, 0.0328, 0.0284, 0.029, 0.0274, 0.025, 0.0226, 0.0262, 0.3298, 0.6588, 0.8866, 0.9492, 0.9244, 0.8558, 0.032, 0.018, 0.015, 0.0126, 0.0116, 0.0108, 0.0108, 0.0118, 0.0118, 0.0198, 0.019, 0.018, 0.0176, 0.0902, 0.0744, 0.8474, 0.8508, 0.861, 0.8704, 0.885, 0.949, 0.919, 0.8738, 0.8662, 0.8596, 0.8486, 0.8432, 0.0326, 0.0302, 0.0308, 0.0288, 0.0284, 0.0326, 0.033, 0.0332, 0.0382, 0.0376, 0.0338, 0.0356, 0.0376, 0.047, 0.0502, 0.0454, 0.0442, 0.0472, 0.0504, 0.0488, 0.0476, 0.0502, 0.0526, 0.0536, 0.0562, 0.0838, 0.0608, 0.0634, 0.0664, 0.0698, 0.0742, 0.0804, 0.0904, 0.1048, 0.2004, 0.3412, 0.5786, 0.9494], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/sCache_3_2.gap.json b/pfam_gap_rates/sCache_3_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b83992831c5dd1a4ccbda3b6e3174ef52b6321b
--- /dev/null
+++ b/pfam_gap_rates/sCache_3_2.gap.json
@@ -0,0 +1 @@
+{"family": "sCache_3_2", "n_seqs": 622, "length": 151, "gap_rates": [0.882636655948553, 0.6768488745980707, 0.4871382636655949, 0.36012861736334406, 0.29260450160771706, 0.22186495176848875, 0.16881028938906753, 0.14469453376205788, 0.13504823151125403, 0.12218649517684887, 0.11093247588424437, 0.10610932475884244, 0.10289389067524116, 0.0932475884244373, 0.08842443729903537, 0.08520900321543408, 0.08038585209003216, 0.07877813504823152, 0.07717041800643087, 0.07395498392282958, 0.07717041800643087, 0.07395498392282958, 0.07234726688102894, 0.0707395498392283, 0.0707395498392283, 0.0707395498392283, 0.09807073954983923, 0.08038585209003216, 0.08038585209003216, 0.07877813504823152, 0.07556270096463022, 0.07717041800643087, 0.842443729903537, 0.927652733118971, 0.9405144694533762, 0.9485530546623794, 0.9453376205787781, 0.9372990353697749, 0.8954983922829582, 0.8263665594855305, 0.27813504823151125, 0.20257234726688103, 0.1832797427652733, 0.04662379421221865, 0.03376205787781351, 0.027331189710610933, 0.022508038585209004, 0.02090032154340836, 0.01929260450160772, 0.01929260450160772, 0.014469453376205787, 0.9485530546623794, 0.8762057877813505, 0.01607717041800643, 0.017684887459807074, 0.017684887459807074, 0.012861736334405145, 0.012861736334405145, 0.014469453376205787, 0.017684887459807074, 0.014469453376205787, 0.014469453376205787, 0.008038585209003215, 0.008038585209003215, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.00482315112540193, 0.00482315112540193, 0.00482315112540193, 0.006430868167202572, 0.006430868167202572, 0.00482315112540193, 0.00482315112540193, 0.00482315112540193, 0.00482315112540193, 0.00482315112540193, 0.05466237942122187, 0.0594855305466238, 0.05627009646302251, 0.05466237942122187, 0.00964630225080386, 0.011254019292604502, 0.008038585209003215, 0.008038585209003215, 0.008038585209003215, 0.006430868167202572, 0.8890675241157556, 0.6061093247588425, 0.36012861736334406, 0.04501607717041801, 0.02090032154340836, 0.011254019292604502, 0.011254019292604502, 0.011254019292604502, 0.011254019292604502, 0.011254019292604502, 0.01929260450160772, 0.012861736334405145, 0.011254019292604502, 0.012861736334405145, 0.011254019292604502, 0.012861736334405145, 0.014469453376205787, 0.022508038585209004, 0.01929260450160772, 0.017684887459807074, 0.9260450160771704, 0.05466237942122187, 0.03215434083601286, 0.03536977491961415, 0.03215434083601286, 0.027331189710610933, 0.02090032154340836, 0.014469453376205787, 0.014469453376205787, 0.012861736334405145, 0.012861736334405145, 0.012861736334405145, 0.014469453376205787, 0.014469453376205787, 0.01607717041800643, 0.01607717041800643, 0.01607717041800643, 0.27491961414790994, 0.8810289389067524, 0.05787781350482315, 0.06270096463022508, 0.06109324758842444, 0.022508038585209004, 0.022508038585209004, 0.024115755627009645, 0.02572347266881029, 0.027331189710610933, 0.03376205787781351, 0.03536977491961415, 0.04180064308681672, 0.04501607717041801, 0.04823151125401929, 0.05466237942122187, 0.05787781350482315, 0.06913183279742766, 0.0819935691318328, 0.12379421221864952, 0.1720257234726688, 0.2508038585209003, 0.28938906752411575, 0.38263665594855306, 0.4807073954983923, 0.7090032154340836, 0.882636655948553], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_1g.gap.json b/pfam_gap_rates/tRNA-synt_1g.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2dbf368c50c839be65cb945cced40f51614469d
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_1g.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA-synt_1g", "n_seqs": 5000, "length": 410, "gap_rates": [0.6072, 0.4618, 0.4392, 0.4196, 0.4068, 0.3672, 0.2894, 0.2814, 0.2802, 0.279, 0.2774, 0.2766, 0.2718, 0.8934, 0.2716, 0.2712, 0.2692, 0.269, 0.269, 0.2676, 0.2676, 0.8504, 0.2672, 0.2652, 0.2644, 0.2636, 0.263, 0.2634, 0.2634, 0.263, 0.2632, 0.2636, 0.2626, 0.263, 0.263, 0.2612, 0.2608, 0.2604, 0.261, 0.2608, 0.2604, 0.2604, 0.26, 0.259, 0.2588, 0.2586, 0.2584, 0.2584, 0.2586, 0.259, 0.2588, 0.259, 0.2586, 0.259, 0.2586, 0.2588, 0.2582, 0.258, 0.2578, 0.2576, 0.2576, 0.2576, 0.2576, 0.2582, 0.258, 0.2576, 0.2574, 0.2576, 0.2572, 0.2574, 0.2572, 0.2572, 0.2576, 0.2578, 0.2576, 0.2576, 0.258, 0.2584, 0.259, 0.2592, 0.259, 0.2592, 0.2588, 0.259, 0.2586, 0.2582, 0.2582, 0.2586, 0.9134, 0.9086, 0.2596, 0.262, 0.263, 0.2626, 0.2626, 0.2628, 0.263, 0.2628, 0.2624, 0.2624, 0.2626, 0.2624, 0.2626, 0.2626, 0.263, 0.2632, 0.2632, 0.263, 0.2636, 0.265, 0.2694, 0.279, 0.2866, 0.3012, 0.2986, 0.2948, 0.296, 0.2964, 0.2962, 0.2968, 0.297, 0.2978, 0.2974, 0.2982, 0.2992, 0.2998, 0.3012, 0.3018, 0.3028, 0.3024, 0.3024, 0.303, 0.3036, 0.306, 0.3076, 0.3114, 0.316, 0.3194, 0.85, 0.3356, 0.4034, 0.4232, 0.4714, 0.477, 0.5326, 0.5472, 0.5754, 0.5784, 0.6374, 0.643, 0.6722, 0.6748, 0.6736, 0.6748, 0.6724, 0.6742, 0.6678, 0.652, 0.6474, 0.6378, 0.6362, 0.635, 0.6362, 0.6364, 0.6364, 0.7436, 0.7178, 0.7042, 0.6956, 0.6922, 0.6858, 0.6758, 0.6462, 0.6386, 0.6266, 0.6218, 0.5804, 0.5698, 0.5612, 0.5556, 0.549, 0.4984, 0.4752, 0.4666, 0.4942, 0.4428, 0.4426, 0.4422, 0.442, 0.4418, 0.4418, 0.4416, 0.4406, 0.4406, 0.4408, 0.4414, 0.4412, 0.4402, 0.4402, 0.4402, 0.44, 0.4398, 0.4402, 0.4404, 0.7366, 0.4538, 0.4492, 0.4582, 0.4952, 0.474, 0.6742, 0.8882, 0.6162, 0.4414, 0.4416, 0.4412, 0.4408, 0.4404, 0.4402, 0.4406, 0.44, 0.4396, 0.442, 0.4404, 0.44, 0.4398, 0.4402, 0.439, 0.4744, 0.4378, 0.438, 0.4372, 0.4376, 0.4378, 0.4378, 0.4382, 0.8916, 0.892, 0.6786, 0.438, 0.4376, 0.4376, 0.4376, 0.4368, 0.937, 0.4366, 0.4366, 0.4368, 0.4368, 0.4374, 0.8304, 0.9448, 0.8274, 0.4386, 0.4386, 0.4374, 0.4378, 0.4376, 0.4378, 0.4374, 0.438, 0.438, 0.4376, 0.4374, 0.4378, 0.4378, 0.4378, 0.4378, 0.4378, 0.4384, 0.438, 0.438, 0.4384, 0.4386, 0.4388, 0.4394, 0.445, 0.4522, 0.807, 0.7836, 0.7568, 0.7064, 0.6094, 0.5324, 0.4622, 0.4552, 0.4526, 0.4462, 0.4508, 0.4422, 0.4412, 0.6206, 0.5924, 0.7538, 0.7388, 0.7334, 0.7032, 0.6142, 0.4426, 0.4362, 0.4332, 0.4318, 0.4306, 0.4288, 0.4284, 0.429, 0.429, 0.4288, 0.4292, 0.4294, 0.4294, 0.4296, 0.4288, 0.4288, 0.4296, 0.4292, 0.4292, 0.4276, 0.4284, 0.428, 0.4276, 0.8672, 0.8302, 0.4276, 0.4306, 0.4298, 0.4278, 0.4252, 0.4256, 0.4254, 0.4248, 0.4244, 0.4244, 0.425, 0.4244, 0.4244, 0.4244, 0.4242, 0.4242, 0.4242, 0.424, 0.4248, 0.424, 0.4236, 0.4238, 0.424, 0.4242, 0.4244, 0.4246, 0.4254, 0.425, 0.4252, 0.4256, 0.4256, 0.4258, 0.4264, 0.4264, 0.4272, 0.4266, 0.4272, 0.4268, 0.903, 0.4258, 0.4258, 0.4258, 0.4256, 0.4258, 0.4258, 0.4258, 0.426, 0.4262, 0.4262, 0.4266, 0.4268, 0.9318, 0.427, 0.4276, 0.4274, 0.4272, 0.4276, 0.4276, 0.4276, 0.428, 0.4284, 0.4286, 0.4294, 0.433, 0.4328, 0.4356, 0.4376, 0.441, 0.4432, 0.4454, 0.4474, 0.45, 0.4484, 0.449, 0.4494, 0.4498, 0.4504, 0.451, 0.4512, 0.4522, 0.453, 0.4536, 0.4542, 0.4544, 0.4556, 0.4592, 0.8796], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_2.gap.json b/pfam_gap_rates/tRNA-synt_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c77bc63d9ae4485b374145da297ee81685769ab1
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_2_TM.gap.json b/pfam_gap_rates/tRNA-synt_2_TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07fb4565dd2b9caad05b1c11e4493c60f6b75c99
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_2_TM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_bind.gap.json b/pfam_gap_rates/tRNA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..459e370b3d6c041162642e77775ee6c3fa97c25b
--- /dev/null
+++ b/pfam_gap_rates/tRNA_bind.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_bind", "n_seqs": 4715, "length": 121, "gap_rates": [0.13404029692470837, 0.03902439024390244, 0.02820784729586426, 0.02099681866383881, 0.019724284199363732, 0.019088016967126194, 0.019088016967126194, 0.018663838812301166, 0.018451749734888653, 0.01823966065747614, 0.017391304347826087, 0.016755037115588546, 0.015906680805938492, 0.015906680805938492, 0.01569459172852598, 0.02926829268292683, 0.01611876988335101, 0.8740190880169671, 0.014846235418875928, 0.013997879109225874, 0.012937433722163308, 0.012301166489925769, 0.012301166489925769, 0.012089077412513256, 0.01166489925768823, 0.012301166489925769, 0.011876988335100742, 0.01166489925768823, 0.011240721102863203, 0.010604453870625663, 0.9283138918345705, 0.9389183457051962, 0.9353128313891834, 0.8193001060445387, 0.3616118769883351, 0.01823966065747614, 0.008483563096500531, 0.008483563096500531, 0.008483563096500531, 0.008483563096500531, 0.008059384941675504, 0.008059384941675504, 0.008271474019088017, 0.00911983032873807, 0.008483563096500531, 0.008695652173913044, 0.008483563096500531, 0.6006362672322375, 0.0992576882290562, 0.09459172852598091, 0.09310710498409332, 0.09056203605514317, 0.07317073170731707, 0.0704135737009544, 0.008059384941675504, 0.008059384941675504, 0.00784729586426299, 0.008483563096500531, 0.014634146341463415, 0.015270413573700955, 0.017815482502651112, 0.8665959703075292, 0.02290562036055143, 0.02481442205726405, 0.030752916224814422, 0.032025450689289504, 0.006786850477200424, 0.6074231177094379, 0.7913043478260869, 0.8443266171792153, 0.8825026511134677, 0.9100742311770944, 0.9011664899257689, 0.8568398727465536, 0.8439024390243902, 0.7232237539766702, 0.6065747613997879, 0.008059384941675504, 0.008059384941675504, 0.008059384941675504, 0.00784729586426299, 0.008059384941675504, 0.008271474019088017, 0.008271474019088017, 0.008059384941675504, 0.008483563096500531, 0.008483563096500531, 0.008483563096500531, 0.008907741251325556, 0.00911983032873807, 0.009544008483563097, 0.009968186638388122, 0.19406150583244963, 0.5090137857900318, 0.8366914103923648, 0.8920466595970308, 0.9058324496288441, 0.8969247083775186, 0.8835630965005302, 0.8027571580063627, 0.4844114528101803, 0.35758218451749735, 0.05811240721102863, 0.05174973488865323, 0.049204665959703076, 0.051961823966065745, 0.05641569459172852, 0.062354188759278895, 0.06489925768822906, 0.06808059384941675, 0.07486744432661718, 0.08441145281018028, 0.10371155885471899, 0.11898197242841993, 0.13637327677624603, 0.1694591728525981, 0.17879109225874867, 0.18960763520678686, 0.19639448568398726, 0.2965005302226935, 0.927253446447508], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_edit.gap.json b/pfam_gap_rates/tRNA_edit.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e681feedefdcc60d016106e8f80fc78868e10b00
--- /dev/null
+++ b/pfam_gap_rates/tRNA_edit.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_edit", "n_seqs": 4079, "length": 139, "gap_rates": [0.6079921549399363, 0.5197352292228488, 0.43760725668055894, 0.37484677617063006, 0.3388085315028193, 0.31306692816866877, 0.2887962735964697, 0.22652610934052464, 0.15346898749693552, 0.1127727384162785, 0.09659230203481245, 0.08727629320911988, 0.08482471193920078, 0.08139249816131405, 0.07673449374846776, 0.9485167933316989, 0.9418975239029174, 0.07575386124050013, 0.06717332679578328, 0.05638636920813925, 0.05074773228732533, 0.03947045844569747, 0.03554792841382692, 0.02476097082618289, 0.02402549644520716, 0.023780338318215247, 0.02329002206423143, 0.02304486393723952, 0.02279970581024761, 0.0225545476832557, 0.11988232409904388, 0.8104927678352537, 0.8744790389801422, 0.9399362588869821, 0.8379504780583477, 0.7587644030399607, 0.14758519244912968, 0.04854130914439814, 0.04535425349350331, 0.09585682765383673, 0.9222848737435646, 0.9455748958077961, 0.8320666830105418, 0.018386859524393232, 0.017651385143417506, 0.017161068889433684, 0.016915910762441776, 0.015690120127482225, 0.015690120127482225, 0.015690120127482225, 0.015444962000490316, 0.015690120127482225, 0.015199803873498407, 0.015199803873498407, 0.014709487619514587, 0.014464329492522677, 0.015444962000490316, 0.013728855111546949, 0.013974013238538857, 0.014219171365530768, 0.013483696984555038, 0.014219171365530768, 0.014219171365530768, 0.014954645746506496, 0.016670752635449867, 0.9477813189507233, 0.1873008090218191, 0.8926207403775435, 0.04363814660455994, 0.02230938955626379, 0.02181907330227997, 0.015935278254474137, 0.014709487619514587, 0.015444962000490316, 0.015935278254474137, 0.015199803873498407, 0.015444962000490316, 0.014219171365530768, 0.013728855111546949, 0.013974013238538857, 0.013728855111546949, 0.014954645746506496, 0.05687668546212307, 0.013974013238538857, 0.014219171365530768, 0.013238538857563127, 0.013483696984555038, 0.012993380730571219, 0.013238538857563127, 0.013974013238538857, 0.013728855111546949, 0.014219171365530768, 0.014464329492522677, 0.014464329492522677, 0.018141701397401323, 0.6209855356705075, 0.8149056141211081, 0.8254474135817602, 0.7886736945329738, 0.1554302525128708, 0.14390782054425105, 0.11007599901936749, 0.017651385143417506, 0.016915910762441776, 0.016425594508457955, 0.016425594508457955, 0.016670752635449867, 0.016915910762441776, 0.016915910762441776, 0.017406227016425593, 0.017406227016425593, 0.017406227016425593, 0.018141701397401323, 0.02329002206423143, 0.02427065457219907, 0.9468006864427556, 0.0451090953665114, 0.0250061289531748, 0.025251287080166707, 0.02574160333415053, 0.026231919588134346, 0.026231919588134346, 0.026477077715126255, 0.027212552096101985, 0.027457710223093897, 0.028193184604069624, 0.029173817112037263, 0.030644765873988723, 0.03456729590585928, 0.03799950968374602, 0.049767099779357685, 0.06864427555773474, 0.08556018632017652, 0.11988232409904388, 0.32458936013728856, 0.2351066437852415, 0.3113508212797254, 0.4768325569992645, 0.7805834763422408], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_int_end_N2.gap.json b/pfam_gap_rates/tRNA_int_end_N2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be435acd133c412b73ab15557c4dc2e4282fd9a6
--- /dev/null
+++ b/pfam_gap_rates/tRNA_int_end_N2.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_int_end_N2", "n_seqs": 248, "length": 123, "gap_rates": [0.7419354838709677, 0.4959677419354839, 0.4112903225806452, 0.36693548387096775, 0.32661290322580644, 0.3024193548387097, 0.27419354838709675, 0.25806451612903225, 0.25, 0.2217741935483871, 0.1975806451612903, 0.16129032258064516, 0.10483870967741936, 0.10080645161290322, 0.09274193548387097, 0.07661290322580645, 0.07661290322580645, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.06854838709677419, 0.7701612903225806, 0.7862903225806451, 0.7943548387096774, 0.7943548387096774, 0.7983870967741935, 0.8145161290322581, 0.8185483870967742, 0.8306451612903226, 0.8548387096774194, 0.8709677419354839, 0.8830645161290323, 0.8951612903225806, 0.8991935483870968, 0.9153225806451613, 0.9233870967741935, 0.9314516129032258, 0.9354838709677419, 0.9475806451612904, 0.9475806451612904, 0.9314516129032258, 0.9314516129032258, 0.9193548387096774, 0.907258064516129, 0.8951612903225806, 0.8911290322580645, 0.8790322580645161, 0.8629032258064516, 0.8346774193548387, 0.8185483870967742, 0.8145161290322581, 0.7983870967741935, 0.7983870967741935, 0.7943548387096774, 0.7903225806451613, 0.782258064516129, 0.7661290322580645, 0.0846774193548387, 0.07661290322580645, 0.06451612903225806, 0.06048387096774194, 0.04838709677419355, 0.024193548387096774, 0.020161290322580645, 0.020161290322580645, 0.024193548387096774, 0.875, 0.8588709677419355, 0.14516129032258066, 0.11290322580645161, 0.03225806451612903, 0.016129032258064516, 0.016129032258064516, 0.04435483870967742, 0.012096774193548387, 0.012096774193548387, 0.012096774193548387, 0.0, 0.0, 0.1774193548387097, 0.1774193548387097, 0.8991935483870968, 0.7701612903225806, 0.4798387096774194, 0.7298387096774194, 0.7379032258064516, 0.8064516129032258, 0.8387096774193549, 0.9314516129032258, 0.9475806451612904, 0.9354838709677419, 0.8830645161290323, 0.8225806451612904, 0.7701612903225806, 0.7379032258064516, 0.7258064516129032, 0.5120967741935484, 0.6854838709677419, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004032258064516129, 0.004032258064516129, 0.008064516129032258, 0.020161290322580645, 0.03225806451612903, 0.03225806451612903, 0.036290322580645164, 0.07258064516129033, 0.0846774193548387, 0.3225806451612903, 0.6895161290322581], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_synt_1c_R2.gap.json b/pfam_gap_rates/tRNA_synt_1c_R2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90110bd7af585e6c89d3f7c7ca6d253619f520c0
--- /dev/null
+++ b/pfam_gap_rates/tRNA_synt_1c_R2.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_synt_1c_R2", "n_seqs": 191, "length": 111, "gap_rates": [0.17801047120418848, 0.13612565445026178, 0.09947643979057591, 0.09947643979057591, 0.09424083769633508, 0.08900523560209424, 0.08900523560209424, 0.08376963350785341, 0.08376963350785341, 0.08376963350785341, 0.08376963350785341, 0.08376963350785341, 0.08376963350785341, 0.08376963350785341, 0.08376963350785341, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.450261780104712, 0.14136125654450263, 0.1099476439790576, 0.07853403141361257, 0.1256544502617801, 0.09424083769633508, 0.08900523560209424, 0.193717277486911, 0.18324607329842932, 0.17277486910994763, 0.14136125654450263, 0.13089005235602094, 0.1099476439790576, 0.10471204188481675, 0.16753926701570682, 0.16230366492146597, 0.13612565445026178, 0.12041884816753927, 0.09947643979057591, 0.09947643979057591, 0.09947643979057591, 0.10471204188481675, 0.1099476439790576, 0.2094240837696335, 0.17277486910994763, 0.2094240837696335, 0.25654450261780104, 0.34554973821989526, 0.3612565445026178, 0.3717277486910995, 0.4397905759162304, 0.6178010471204188, 0.7382198952879581, 0.7120418848167539, 0.8900523560209425, 0.9267015706806283, 0.9057591623036649, 0.8534031413612565, 0.5863874345549738, 0.5287958115183246, 0.4869109947643979, 0.43455497382198954, 0.4083769633507853, 0.3298429319371728, 0.29842931937172773, 0.27225130890052357, 0.24083769633507854, 0.20418848167539266, 0.2356020942408377, 0.7853403141361257, 0.7486910994764397, 0.10471204188481675, 0.07853403141361257, 0.13089005235602094, 0.07329842931937172, 0.07853403141361257, 0.07329842931937172, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06282722513089005, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.7277486910994765, 0.7277486910994765, 0.743455497382199, 0.7539267015706806, 0.7277486910994765, 0.7277486910994765, 0.7277486910994765, 0.193717277486911, 0.25654450261780104, 0.2670157068062827, 0.28272251308900526, 0.2617801047120419, 0.27225130890052357, 0.7958115183246073, 0.28272251308900526, 0.31413612565445026, 0.29842931937172773, 0.2931937172774869, 0.31413612565445026, 0.3193717277486911, 0.3193717277486911, 0.3298429319371728, 0.3298429319371728, 0.3507853403141361, 0.34554973821989526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/wnt.gap.json b/pfam_gap_rates/wnt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..036544f0b527e6718913389c0a6f42d9a20479df
--- /dev/null
+++ b/pfam_gap_rates/wnt.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/zf-B_box.gap.json b/pfam_gap_rates/zf-B_box.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c42eedfe6c348c12994a7275f2023ee16a4d7c96
--- /dev/null
+++ b/pfam_gap_rates/zf-B_box.gap.json
@@ -0,0 +1 @@
+{"family": "zf-B_box", "n_seqs": 4662, "length": 48, "gap_rates": [0.7344487344487345, 0.4616044616044616, 0.1793221793221793, 0.03003003003003003, 0.013513513513513514, 0.011797511797511798, 0.008365508365508366, 0.007722007722007722, 0.007722007722007722, 0.3492063492063492, 0.008151008151008152, 0.004933504933504933, 0.0036465036465036463, 0.0015015015015015015, 0.0006435006435006435, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6576576576576577, 0.11025311025311026, 0.009438009438009438, 0.009652509652509652, 0.011368511368511369, 0.012012012012012012, 0.017803517803517802, 0.6887601887601887, 0.7374517374517374, 0.8003003003003003, 0.7507507507507507, 0.7198627198627199, 0.6823251823251824, 0.0546975546975547, 0.06006006006006006, 0.09952809952809953, 0.1700986700986701, 0.2756327756327756, 0.4854139854139854, 0.7224367224367224], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C3H1.gap.json b/pfam_gap_rates/zf-C3H1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f19a9ed28b6d068033c25defd0a3af5886229da
--- /dev/null
+++ b/pfam_gap_rates/zf-C3H1.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C3H1", "n_seqs": 135, "length": 23, "gap_rates": [0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.0, 0.6, 0.0, 0.0, 0.0, 0.02962962962962963, 0.9407407407407408, 0.0, 0.0, 0.0, 0.0, 0.0, 0.022222222222222223, 0.02962962962962963, 0.1925925925925926, 0.4888888888888889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C3H2C3.gap.json b/pfam_gap_rates/zf-C3H2C3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..514fc1ed9b0535f94026ab53b161af050ee77396
--- /dev/null
+++ b/pfam_gap_rates/zf-C3H2C3.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C3H2C3", "n_seqs": 112, "length": 45, "gap_rates": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6875, 0.9285714285714286, 0.22321428571428573, 0.026785714285714284, 0.9375, 0.9464285714285714, 0.9375, 0.08928571428571429, 0.9285714285714286, 0.13392857142857142, 0.1875, 0.9464285714285714, 0.75, 0.21428571428571427, 0.8660714285714286, 0.20535714285714285, 0.21428571428571427, 0.22321428571428573, 0.23214285714285715, 0.9375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C6H2.gap.json b/pfam_gap_rates/zf-C6H2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad2d908e9808f19ebcdf1a99d32a35d341e85662
--- /dev/null
+++ b/pfam_gap_rates/zf-C6H2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C6H2", "n_seqs": 357, "length": 52, "gap_rates": [0.37815126050420167, 0.37815126050420167, 0.37254901960784315, 0.22128851540616246, 0.16806722689075632, 0.15966386554621848, 0.9327731092436975, 0.927170868347339, 0.15406162464985995, 0.08683473389355742, 0.0392156862745098, 0.036414565826330535, 0.5322128851540616, 0.025210084033613446, 0.8711484593837535, 0.008403361344537815, 0.0056022408963585435, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0056022408963585435, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0, 0.18487394957983194, 0.7254901960784313, 0.6778711484593838, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0028011204481792717, 0.014005602240896359, 0.014005602240896359, 0.014005602240896359, 0.022408963585434174, 0.022408963585434174, 0.03081232492997199, 0.0392156862745098, 0.04481792717086835, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.056022408963585436, 0.06162464985994398, 0.13445378151260504, 0.9047619047619048], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CCHC_4.gap.json b/pfam_gap_rates/zf-CCHC_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82ee9455f167866e3348ce519db69e5dfd6a9129
--- /dev/null
+++ b/pfam_gap_rates/zf-CCHC_4.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CCHC_4", "n_seqs": 442, "length": 49, "gap_rates": [0.7850678733031674, 0.7262443438914027, 0.6877828054298643, 0.6606334841628959, 0.6493212669683258, 0.6402714932126696, 0.6402714932126696, 0.6357466063348416, 0.6334841628959276, 0.6334841628959276, 0.6334841628959276, 0.6289592760180995, 0.6266968325791855, 0.6312217194570136, 0.6334841628959276, 0.6425339366515838, 0.6628959276018099, 0.6425339366515838, 0.6131221719457014, 0.5995475113122172, 0.6063348416289592, 0.5859728506787331, 0.579185520361991, 0.5701357466063348, 0.5678733031674208, 0.5678733031674208, 0.5656108597285068, 0.5588235294117647, 0.5520361990950227, 0.5384615384615384, 0.5113122171945701, 0.3552036199095023, 0.1244343891402715, 0.00904977375565611, 0.013574660633484163, 0.011312217194570135, 0.011312217194570135, 0.013574660633484163, 0.01583710407239819, 0.027149321266968326, 0.03167420814479638, 0.03619909502262444, 0.042986425339366516, 0.05656108597285068, 0.058823529411764705, 0.06787330316742081, 0.07239819004524888, 0.167420814479638, 0.8461538461538461], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CCHC_6.gap.json b/pfam_gap_rates/zf-CCHC_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9538e1152d4cb96ffc44e1c4352a39763c9e7a7
--- /dev/null
+++ b/pfam_gap_rates/zf-CCHC_6.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CCHC_6", "n_seqs": 191, "length": 40, "gap_rates": [0.4869109947643979, 0.18848167539267016, 0.04712041884816754, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.010471204188481676, 0.010471204188481676, 0.0, 0.0, 0.0, 0.0, 0.03664921465968586, 0.1099476439790576, 0.1256544502617801, 0.2879581151832461, 0.3298429319371728, 0.39267015706806285, 0.43455497382198954, 0.4712041884816754, 0.4816753926701571, 0.5078534031413613, 0.5340314136125655, 0.5497382198952879, 0.5706806282722513, 0.5863874345549738, 0.5968586387434555, 0.5968586387434555, 0.6020942408376964, 0.6073298429319371, 0.612565445026178, 0.6230366492146597], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CHC2.gap.json b/pfam_gap_rates/zf-CHC2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..94da4e0208d203e54de32a922b97963efdaa4581
--- /dev/null
+++ b/pfam_gap_rates/zf-CHC2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CHC2", "n_seqs": 2535, "length": 98, "gap_rates": [0.5940828402366863, 0.3680473372781065, 0.2796844181459566, 0.20946745562130178, 0.17238658777120316, 0.13925049309664694, 0.13057199211045364, 0.126232741617357, 0.12465483234714005, 0.11715976331360947, 0.10927021696252466, 0.10374753451676529, 0.0990138067061144, 0.09625246548323471, 0.09585798816568047, 0.09349112426035502, 0.09230769230769231, 0.09230769230769231, 0.09112426035502959, 0.0903353057199211, 0.08599605522682446, 0.9447731755424064, 0.0863905325443787, 0.08165680473372781, 0.07495069033530571, 0.06863905325443787, 0.06193293885601578, 0.053648915187376724, 0.0485207100591716, 0.05838264299802761, 0.053648915187376724, 0.9124260355029585, 0.04891518737672584, 0.02642998027613412, 0.01893491124260355, 0.013806706114398421, 0.010256410256410256, 0.009467455621301775, 0.009467455621301775, 0.009072978303747535, 0.009072978303747535, 0.009072978303747535, 0.009467455621301775, 0.010650887573964497, 0.009072978303747535, 0.010256410256410256, 0.013412228796844181, 0.0126232741617357, 0.009467455621301775, 0.009861932938856016, 0.02445759368836292, 0.0398422090729783, 0.04891518737672584, 0.028402366863905324, 0.00631163708086785, 0.004733727810650888, 0.003155818540433925, 0.003155818540433925, 0.003155818540433925, 0.003155818540433925, 0.004339250493096647, 0.004733727810650888, 0.005522682445759369, 0.005917159763313609, 0.007495069033530572, 0.007495069033530572, 0.007889546351084813, 0.008678500986193294, 0.009467455621301775, 0.010650887573964497, 0.011045364891518738, 0.013412228796844181, 0.013412228796844181, 0.014595660749506903, 0.01775147928994083, 0.020118343195266272, 0.022879684418145956, 0.02485207100591716, 0.028007889546351084, 0.028007889546351084, 0.03116370808678501, 0.03076923076923077, 0.03155818540433925, 0.033136094674556214, 0.033136094674556214, 0.035108481262327414, 0.04970414201183432, 0.06193293885601578, 0.07061143984220908, 0.08126232741617356, 0.09112426035502959, 0.09861932938856016, 0.11203155818540433, 0.13175542406311638, 0.17041420118343195, 0.303353057199211, 0.578698224852071, 0.9357001972386588], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-GRF.gap.json b/pfam_gap_rates/zf-GRF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..511b9a156bc3abfae3a002af2e716c3007dc1d1c
--- /dev/null
+++ b/pfam_gap_rates/zf-GRF.gap.json
@@ -0,0 +1 @@
+{"family": "zf-GRF", "n_seqs": 836, "length": 53, "gap_rates": [0.5454545454545454, 0.10645933014354067, 0.034688995215311005, 0.034688995215311005, 0.7643540669856459, 0.02631578947368421, 0.02631578947368421, 0.8648325358851675, 0.02751196172248804, 0.02631578947368421, 0.017942583732057416, 0.02033492822966507, 0.019138755980861243, 0.01674641148325359, 0.014354066985645933, 0.011961722488038277, 0.09210526315789473, 0.27631578947368424, 0.01076555023923445, 0.0023923444976076554, 0.0011961722488038277, 0.0, 0.0011961722488038277, 0.0011961722488038277, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011961722488038277, 0.007177033492822967, 0.013157894736842105, 0.03110047846889952, 0.13995215311004786, 0.6782296650717703, 0.8289473684210527, 0.8767942583732058, 0.8672248803827751, 0.7344497607655502, 0.5287081339712919, 0.22966507177033493, 0.1686602870813397, 0.04665071770334928, 0.0430622009569378, 0.041866028708133975, 0.050239234449760764, 0.05861244019138756, 0.07894736842105263, 0.10885167464114832, 0.2535885167464115, 0.4533492822966507, 0.9318181818181818], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-ISL3.gap.json b/pfam_gap_rates/zf-ISL3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e0139e32adfdc6861cf94d886d16fdc4cfa3429
--- /dev/null
+++ b/pfam_gap_rates/zf-ISL3.gap.json
@@ -0,0 +1 @@
+{"family": "zf-ISL3", "n_seqs": 768, "length": 51, "gap_rates": [0.6979166666666666, 0.2578125, 0.0625, 0.03125, 0.029947916666666668, 0.029947916666666668, 0.028645833333333332, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.7903645833333334, 0.029947916666666668, 0.15234375, 0.9192708333333334, 0.94921875, 0.9401041666666666, 0.9153645833333334, 0.0234375, 0.00390625, 0.010416666666666666, 0.022135416666666668, 0.08333333333333333, 0.07161458333333333, 0.0, 0.0, 0.0, 0.0, 0.00390625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00390625, 0.0, 0.0, 0.0, 0.0, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0078125, 0.0078125, 0.010416666666666666, 0.026041666666666668, 0.032552083333333336, 0.13020833333333334, 0.2877604166666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-SNAP50_C.gap.json b/pfam_gap_rates/zf-SNAP50_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6ce8d3563aa7d8462b911533263f991fed12057
--- /dev/null
+++ b/pfam_gap_rates/zf-SNAP50_C.gap.json
@@ -0,0 +1 @@
+{"family": "zf-SNAP50_C", "n_seqs": 249, "length": 251, "gap_rates": [0.6706827309236948, 0.4457831325301205, 0.3333333333333333, 0.25301204819277107, 0.24096385542168675, 0.23293172690763053, 0.2289156626506024, 0.22088353413654618, 0.21285140562248997, 0.20883534136546184, 0.20080321285140562, 0.20080321285140562, 0.20080321285140562, 0.20080321285140562, 0.20080321285140562, 0.20080321285140562, 0.20080321285140562, 0.20080321285140562, 0.20080321285140562, 0.19678714859437751, 0.19678714859437751, 0.19678714859437751, 0.19678714859437751, 0.570281124497992, 0.7429718875502008, 0.8273092369477911, 0.8514056224899599, 0.8072289156626506, 0.5943775100401606, 0.5662650602409639, 0.5461847389558233, 0.6104417670682731, 0.5863453815261044, 0.5863453815261044, 0.570281124497992, 0.5542168674698795, 0.5261044176706827, 0.5341365461847389, 0.5341365461847389, 0.46987951807228917, 0.8995983935742972, 0.927710843373494, 0.9357429718875502, 0.9196787148594378, 0.8273092369477911, 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\ No newline at end of file
diff --git a/pfam_gap_rates/zf-TRAF.gap.json b/pfam_gap_rates/zf-TRAF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..408e8783056b25cb98b5ca5d118281f7b3382087
--- /dev/null
+++ b/pfam_gap_rates/zf-TRAF.gap.json
@@ -0,0 +1 @@
+{"family": "zf-TRAF", "n_seqs": 1161, "length": 61, "gap_rates": [0.24720068906115417, 0.2446167097329888, 0.21791559000861327, 0.18087855297157623, 0.8613264427217916, 0.17226528854435832, 0.165374677002584, 0.1645133505598622, 0.14814814814814814, 0.13092161929371232, 0.1223083548664944, 0.11369509043927649, 0.10852713178294573, 0.2127476313522825, 0.13608957795004306, 0.24375538329026702, 0.1748492678725237, 0.0818260120585702, 0.18087855297157623, 0.0913006029285099, 0.32385874246339363, 0.08010335917312661, 0.07407407407407407, 0.0611541774332472, 0.002583979328165375, 0.0017226528854435831, 0.0, 0.0, 0.0, 0.0017226528854435831, 0.0017226528854435831, 0.0008613264427217916, 0.3066322136089578, 0.0, 0.0, 0.0034453057708871662, 0.004306632213608958, 0.0068906115417743325, 0.012058570198105082, 0.0103359173126615, 0.007751937984496124, 0.007751937984496124, 0.009474590869939707, 0.017226528854435832, 0.4099913867355728, 0.409130060292851, 0.3850129198966408, 0.32127476313522824, 0.02153316106804479, 0.025839793281653745, 0.04306632213608958, 0.06459948320413436, 0.11886304909560723, 0.1335055986218777, 0.14470284237726097, 0.1524547803617571, 0.16192937123169682, 0.17657192075796727, 0.2127476313522825, 0.223083548664944, 0.22652885443583118], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-met2.gap.json b/pfam_gap_rates/zf-met2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ade7ea70554b56e4b1d7c8334daa8f36a717aea4
--- /dev/null
+++ b/pfam_gap_rates/zf-met2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-met2", "n_seqs": 197, "length": 40, "gap_rates": [0.19289340101522842, 0.030456852791878174, 0.030456852791878174, 0.025380710659898477, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.025380710659898477, 0.030456852791878174, 0.030456852791878174, 0.02030456852791878, 0.015228426395939087, 0.015228426395939087, 0.01015228426395939, 0.08121827411167512, 0.05583756345177665, 0.05583756345177665, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.015228426395939087, 0.030456852791878174, 0.02030456852791878, 0.015228426395939087, 0.015228426395939087, 0.02030456852791878, 0.9289340101522843, 0.9238578680203046, 0.025380710659898477, 0.38578680203045684, 0.06091370558375635, 0.09137055837563451, 0.09644670050761421, 0.1065989847715736, 0.1116751269035533, 0.15736040609137056, 0.19289340101522842, 0.6598984771573604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zinc_ribbon_13.gap.json b/pfam_gap_rates/zinc_ribbon_13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a4890c32aa953dd12f7e6c666ecebcf762e2352
--- /dev/null
+++ b/pfam_gap_rates/zinc_ribbon_13.gap.json
@@ -0,0 +1 @@
+{"family": "zinc_ribbon_13", "n_seqs": 118, "length": 69, "gap_rates": [0.1694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.0, 0.0, 0.0, 0.0, 0.025423728813559324, 0.03389830508474576, 0.0, 0.00847457627118644, 0.00847457627118644, 0.025423728813559324, 0.025423728813559324, 0.0, 0.01694915254237288, 0.00847457627118644, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00847457627118644, 0.01694915254237288, 0.05084745762711865, 0.05084745762711865, 0.059322033898305086, 0.06779661016949153, 0.17796610169491525, 0.211864406779661, 0.8813559322033898, 0.8898305084745762, 0.9491525423728814, 0.9152542372881356, 0.8813559322033898, 0.8813559322033898, 0.2033898305084746, 0.2033898305084746, 0.211864406779661, 0.211864406779661, 0.211864406779661, 0.211864406779661, 0.2288135593220339, 0.4067796610169492], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file