diff --git a/pfam_gap_rates/3H.gap.json b/pfam_gap_rates/3H.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1ff6cd400a35977845384af540db13349628d77
--- /dev/null
+++ b/pfam_gap_rates/3H.gap.json
@@ -0,0 +1 @@
+{"family": "3H", "n_seqs": 338, "length": 98, "gap_rates": [0.2455621301775148, 0.05621301775147929, 0.029585798816568046, 0.01775147928994083, 0.014792899408284023, 0.9408284023668639, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.008875739644970414, 0.008875739644970414, 0.008875739644970414, 0.005917159763313609, 0.005917159763313609, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.008875739644970414, 0.008875739644970414, 0.023668639053254437, 0.029585798816568046, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.008875739644970414, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.008875739644970414, 0.008875739644970414, 0.008875739644970414, 0.008875739644970414, 0.01775147928994083, 0.020710059171597635, 0.023668639053254437, 0.09763313609467456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/3HCDH.gap.json b/pfam_gap_rates/3HCDH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b59dab5ffed54bb33e6ddd4e1887680b8ccc6063
--- /dev/null
+++ b/pfam_gap_rates/3HCDH.gap.json
@@ -0,0 +1 @@
+{"family": "3HCDH", "n_seqs": 5000, "length": 107, "gap_rates": [0.2844, 0.1526, 0.0786, 0.063, 0.0494, 0.038, 0.0288, 0.0248, 0.0228, 0.0214, 0.0202, 0.0192, 0.0186, 0.018, 0.0174, 0.0172, 0.016, 0.0138, 0.0138, 0.0134, 0.0138, 0.0126, 0.2754, 0.0142, 0.0062, 0.0056, 0.005, 0.0038, 0.0038, 0.0036, 0.0036, 0.0042, 0.0038, 0.004, 0.0036, 0.2424, 0.0074, 0.0034, 0.003, 0.003, 0.9194, 0.9212, 0.8344, 0.0034, 0.0036, 0.0038, 0.0034, 0.0034, 0.0036, 0.0046, 0.0052, 0.0064, 0.0066, 0.0072, 0.0088, 0.0094, 0.0112, 0.0136, 0.0162, 0.02, 0.0224, 0.0218, 0.0342, 0.9448, 0.948, 0.901, 0.096, 0.0732, 0.0662, 0.066, 0.0662, 0.0866, 0.0808, 0.0814, 0.0832, 0.8546, 0.9268, 0.9022, 0.7396, 0.2014, 0.1126, 0.1282, 0.2392, 0.157, 0.1224, 0.1074, 0.108, 0.1096, 0.1106, 0.118, 0.1264, 0.132, 0.1368, 0.149, 0.1802, 0.2236, 0.2316, 0.2408, 0.2432, 0.2466, 0.249, 0.251, 0.2546, 0.2624, 0.2724, 0.2968, 0.3874], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/3HCDH_N.gap.json b/pfam_gap_rates/3HCDH_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c9fded3a108e45cbf1eeeb14d007b853d9d0426
--- /dev/null
+++ b/pfam_gap_rates/3HCDH_N.gap.json
@@ -0,0 +1 @@
+{"family": "3HCDH_N", "n_seqs": 4584, "length": 194, "gap_rates": [0.45200698080279234, 0.11125654450261781, 0.07286212914485166, 0.06762652705061083, 0.06544502617801047, 0.06479057591623037, 0.06348167539267016, 0.062390924956369984, 0.061300174520069806, 0.04537521815008726, 0.045157068062827224, 0.04450261780104712, 0.04384816753926701, 0.04384816753926701, 0.04319371727748691, 0.042975567190226875, 0.04057591623036649, 0.03992146596858639, 0.039485165794066315, 0.04013961605584642, 0.039485165794066315, 0.9077225130890052, 0.03904886561954625, 0.037521815008726006, 0.03643106457242583, 0.036212914485165795, 0.03577661431064572, 0.03512216404886562, 0.03577661431064572, 0.03577661431064572, 0.03577661431064572, 0.03599476439790576, 0.039485165794066315, 0.03926701570680628, 0.03883071553228621, 0.03926701570680628, 0.03817626527050611, 0.037085514834205933, 0.03664921465968586, 0.037303664921465966, 0.03795811518324607, 0.037085514834205933, 0.0368673647469459, 0.03773996509598604, 0.040794066317626526, 0.06631762652705062, 0.060209424083769635, 0.055628272251308904, 0.05737347294938918, 0.0636998254799302, 0.08180628272251309, 0.07351657940663177, 0.07504363001745201, 0.0700261780104712, 0.06871727748691099, 0.08224258289703316, 0.07264397905759162, 0.8992146596858639, 0.9144851657940664, 0.9391361256544503, 0.9493891797556719, 0.9432809773123909, 0.9179755671902269, 0.9118673647469459, 0.8806719022687609, 0.15924956369982549, 0.10929319371727748, 0.08638743455497382, 0.07329842931937172, 0.05868237347294939, 0.04581151832460733, 0.040794066317626526, 0.03664921465968586, 0.03446771378708551, 0.03294066317626527, 0.031631762652705064, 0.03206806282722513, 0.04232111692844677, 0.03904886561954625, 0.029668411867364748, 0.029668411867364748, 0.029232111692844676, 0.029013961605584643, 0.028359511343804537, 0.027705061082024432, 0.03446771378708551, 0.7214223385689355, 0.0274869109947644, 0.026614310645724257, 0.026396160558464225, 0.024869109947643978, 0.024869109947643978, 0.02530541012216405, 0.025523560209424083, 0.02443280977312391, 0.02530541012216405, 0.02443280977312391, 0.024869109947643978, 0.024869109947643978, 0.025087260034904014, 0.025087260034904014, 0.02530541012216405, 0.02530541012216405, 0.025523560209424083, 0.025087260034904014, 0.024869109947643978, 0.024869109947643978, 0.024650959860383945, 0.02443280977312391, 0.02443280977312391, 0.025087260034904014, 0.02530541012216405, 0.025959860383944152, 0.03032286212914485, 0.03577661431064572, 0.0274869109947644, 0.027268760907504363, 0.027050610820244327, 0.026396160558464225, 0.02574171029668412, 0.025523560209424083, 0.025523560209424083, 0.026396160558464225, 0.025523560209424083, 0.02530541012216405, 0.025087260034904014, 0.02530541012216405, 0.025523560209424083, 0.025523560209424083, 0.025523560209424083, 0.025959860383944152, 0.02574171029668412, 0.02617801047120419, 0.026396160558464225, 0.0281413612565445, 0.028577661431064574, 0.030541012216404886, 0.031413612565445025, 0.02988656195462478, 0.0462478184991274, 0.04384816753926701, 0.9112129144851658, 0.9092495636998255, 0.02530541012216405, 0.025959860383944152, 0.026614310645724257, 0.02617801047120419, 0.026832460732984294, 0.026396160558464225, 0.027050610820244327, 0.029013961605584643, 0.028795811518324606, 0.028795811518324606, 0.030541012216404886, 0.03446771378708551, 0.032722513089005235, 0.031631762652705064, 0.030104712041884817, 0.0274869109947644, 0.027050610820244327, 0.027923211169284468, 0.028359511343804537, 0.028359511343804537, 0.02988656195462478, 0.031631762652705064, 0.033595113438045374, 0.033595113438045374, 0.03294066317626527, 0.03315881326352531, 0.0325043630017452, 0.03228621291448516, 0.03228621291448516, 0.0325043630017452, 0.03315881326352531, 0.03315881326352531, 0.034031413612565446, 0.034904013961605584, 0.03534031413612566, 0.03599476439790576, 0.03577661431064572, 0.03599476439790576, 0.037303664921465966, 0.8856893542757417, 0.03861256544502618, 0.039485165794066315, 0.04035776614310646, 0.04253926701570681, 0.0549738219895288, 0.06391797556719023, 0.08202443280977312, 0.9024869109947644, 0.18280977312390925, 0.325043630017452, 0.8414048865619547], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/7TMR-DISM_7TM.gap.json b/pfam_gap_rates/7TMR-DISM_7TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3319316e58df46ed1a12c0c4b94a23a7c2478391
--- /dev/null
+++ b/pfam_gap_rates/7TMR-DISM_7TM.gap.json
@@ -0,0 +1 @@
+{"family": "7TMR-DISM_7TM", "n_seqs": 896, "length": 224, "gap_rates": [0.8962053571428571, 0.6573660714285714, 0.42745535714285715, 0.27455357142857145, 0.1875, 0.11160714285714286, 0.06808035714285714, 0.05580357142857143, 0.041294642857142856, 0.033482142857142856, 0.020089285714285716, 0.017857142857142856, 0.015625, 0.013392857142857142, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.6930803571428571, 0.010044642857142858, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.05580357142857143, 0.022321428571428572, 0.017857142857142856, 0.012276785714285714, 0.012276785714285714, 0.011160714285714286, 0.008928571428571428, 0.011160714285714286, 0.012276785714285714, 0.014508928571428572, 0.30245535714285715, 0.19977678571428573, 0.19308035714285715, 0.078125, 0.07142857142857142, 0.53125, 0.03794642857142857, 0.021205357142857144, 0.016741071428571428, 0.016741071428571428, 0.011160714285714286, 0.008928571428571428, 0.010044642857142858, 0.013392857142857142, 0.011160714285714286, 0.008928571428571428, 0.011160714285714286, 0.010044642857142858, 0.011160714285714286, 0.012276785714285714, 0.017857142857142856, 0.20758928571428573, 0.018973214285714284, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.7276785714285714, 0.008928571428571428, 0.010044642857142858, 0.008928571428571428, 0.012276785714285714, 0.017857142857142856, 0.012276785714285714, 0.010044642857142858, 0.013392857142857142, 0.14955357142857142, 0.04017857142857143, 0.4877232142857143, 0.08482142857142858, 0.12053571428571429, 0.8649553571428571, 0.9386160714285714, 0.8895089285714286, 0.7544642857142857, 0.012276785714285714, 0.016741071428571428, 0.015625, 0.014508928571428572, 0.010044642857142858, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.012276785714285714, 0.013392857142857142, 0.10602678571428571, 0.08147321428571429, 0.025669642857142856, 0.013392857142857142, 0.011160714285714286, 0.012276785714285714, 0.015625, 0.12165178571428571, 0.0546875, 0.029017857142857144, 0.018973214285714284, 0.8950892857142857, 0.9475446428571429, 0.8091517857142857, 0.027901785714285716, 0.020089285714285716, 0.012276785714285714, 0.008928571428571428, 0.010044642857142858, 0.014508928571428572, 0.014508928571428572, 0.014508928571428572, 0.022321428571428572, 0.025669642857142856, 0.9296875, 0.9464285714285714, 0.8928571428571429, 0.012276785714285714, 0.010044642857142858, 0.010044642857142858, 0.011160714285714286, 0.010044642857142858, 0.008928571428571428, 0.011160714285714286, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.008928571428571428, 0.011160714285714286, 0.012276785714285714, 0.012276785714285714, 0.014508928571428572, 0.029017857142857144, 0.9352678571428571, 0.875, 0.020089285714285716, 0.015625, 0.016741071428571428, 0.017857142857142856, 0.017857142857142856, 0.018973214285714284, 0.020089285714285716, 0.020089285714285716, 0.021205357142857144, 0.020089285714285716, 0.021205357142857144, 0.022321428571428572, 0.022321428571428572, 0.0234375, 0.022321428571428572, 0.021205357142857144, 0.021205357142857144, 0.0234375, 0.0234375, 0.022321428571428572, 0.022321428571428572, 0.0234375, 0.024553571428571428, 0.05803571428571429, 0.060267857142857144, 0.14285714285714285, 0.14732142857142858, 0.10825892857142858, 0.09821428571428571, 0.07477678571428571, 0.9263392857142857, 0.8727678571428571, 0.052455357142857144, 0.044642857142857144, 0.04799107142857143, 0.04799107142857143, 0.056919642857142856, 0.8303571428571429, 0.20758928571428573, 0.20089285714285715, 0.17857142857142858, 0.20424107142857142, 0.8984375, 0.07477678571428571, 0.06473214285714286, 0.06584821428571429, 0.07366071428571429, 0.07142857142857142, 0.08482142857142858, 0.08147321428571429, 0.08147321428571429, 0.08258928571428571, 0.0859375, 0.08928571428571429, 0.09375, 0.1015625, 0.12165178571428571, 0.14620535714285715, 0.16294642857142858, 0.18638392857142858, 0.20870535714285715, 0.27232142857142855, 0.47879464285714285, 0.6361607142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Srx.gap.json b/pfam_gap_rates/7TM_GPCR_Srx.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00d42f53e1b35f204b3fdc4964883ef4a9122e17
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Srx.gap.json
@@ -0,0 +1 @@
+{"family": "7TM_GPCR_Srx", "n_seqs": 495, "length": 287, "gap_rates": [0.8121212121212121, 0.597979797979798, 0.5151515151515151, 0.49292929292929294, 0.4686868686868687, 0.45656565656565656, 0.4484848484848485, 0.43434343434343436, 0.4262626262626263, 0.41818181818181815, 0.41818181818181815, 0.41414141414141414, 0.4121212121212121, 0.4080808080808081, 0.40606060606060607, 0.40404040404040403, 0.39595959595959596, 0.3939393939393939, 0.3898989898989899, 0.3898989898989899, 0.4585858585858586, 0.4202020202020202, 0.39191919191919194, 0.37777777777777777, 0.37575757575757573, 0.37575757575757573, 0.37575757575757573, 0.37575757575757573, 0.37575757575757573, 0.3717171717171717, 0.36363636363636365, 0.3656565656565657, 0.3595959595959596, 0.3595959595959596, 0.3595959595959596, 0.3595959595959596, 0.3575757575757576, 0.35555555555555557, 0.3515151515151515, 0.3515151515151515, 0.3515151515151515, 0.3474747474747475, 0.34949494949494947, 0.35353535353535354, 0.9414141414141414, 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\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_transglut.gap.json b/pfam_gap_rates/7TM_transglut.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e0af5ba96df49783ecb16d63698cd536d80641f
--- /dev/null
+++ b/pfam_gap_rates/7TM_transglut.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_10.gap.json b/pfam_gap_rates/AAA_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85a7c75530ef59d1477aee0bc40adb970b173279
--- /dev/null
+++ b/pfam_gap_rates/AAA_10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_14.gap.json b/pfam_gap_rates/AAA_14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c18f56533713d78d2fb5defcd398bdfc816c1ab3
--- /dev/null
+++ b/pfam_gap_rates/AAA_14.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_14", "n_seqs": 2599, "length": 154, "gap_rates": [0.605232781839169, 0.25163524432474027, 0.09926894959599845, 0.060023085802231625, 0.046556367833782225, 0.041554444016929586, 0.04078491727587533, 0.03963062716429396, 0.03693728357060408, 0.03616775682954983, 0.0357829934590227, 0.034243939976914196, 0.03385917660638707, 0.03270488649480569, 0.03270488649480569, 0.03270488649480569, 0.03270488649480569, 0.040400153905348214, 0.05348210850327049, 0.0357829934590227, 0.03116583301269719, 0.0461716044632551, 0.0819545979222778, 0.0804155444401693, 0.11081185071181224, 0.14236244709503657, 0.7368218545594459, 0.8953443632166218, 0.776837245094267, 0.7037322046941131, 0.6537129665255867, 0.617929973066564, 0.5794536360138515, 0.27048864948056944, 0.21238938053097345, 0.14928818776452482, 0.11119661408233936, 0.040400153905348214, 0.032320123124278566, 0.026163909195844555, 0.025009619084263177, 0.0238553289726818, 0.02193151212004617, 0.024240092343208928, 0.02308580223162755, 0.02308580223162755, 0.9307425933051173, 0.9453636013851482, 0.9403616775682955, 0.9253559061177375, 0.028857252789534438, 0.05463639861485187, 0.061177375913813004, 0.05617545209696037, 0.9445940746440938, 0.9003462870334744, 0.09157368218545595, 0.07733743747595229, 0.38668718737976143, 0.8106964217006541, 0.9434397845325125, 0.880723355136591, 0.7745286648711043, 0.3382070026933436, 0.16006156213928435, 0.08233936129280492, 0.037322046941131205, 0.02654867256637168, 0.025394382454790303, 0.02770296267795306, 0.03308964986533282, 0.09118891881492881, 0.9245863793766833, 0.7964601769911505, 0.23509041939207387, 0.3505194305502116, 0.2697191227395152, 0.7672181608310888, 0.8307041169680647, 0.9261254328587919, 0.8722585609849942, 0.80723355136591, 0.7206617929973067, 0.43208926510196227, 0.168141592920354, 0.12043093497499038, 0.08618699499807618, 0.04193920738745671, 0.015390534821085032, 0.015005771450557906, 0.01385148133897653, 0.014236244709503656, 0.014236244709503656, 0.014236244709503656, 0.015005771450557906, 0.015775298191612157, 0.01731435167372066, 0.016160061562139283, 0.015775298191612157, 0.016160061562139283, 0.01731435167372066, 0.01731435167372066, 0.017699115044247787, 0.01731435167372066, 0.01731435167372066, 0.017699115044247787, 0.018083878414774913, 0.017699115044247787, 0.017699115044247787, 0.01846864178530204, 0.01846864178530204, 0.9442093112735668, 0.7256637168141593, 0.3786071565986918, 0.05848403232012313, 0.03385917660638707, 0.020007695267410544, 0.018083878414774913, 0.018083878414774913, 0.018083878414774913, 0.01846864178530204, 0.019238168526356292, 0.019238168526356292, 0.019238168526356292, 0.019622931896883418, 0.020007695267410544, 0.020007695267410544, 0.020777222008464793, 0.05694497883801462, 0.041554444016929586, 0.11696806464024626, 0.05848403232012313, 0.034243939976914196, 0.03385917660638707, 0.029242016160061564, 0.029626779530588686, 0.029242016160061564, 0.029626779530588686, 0.029242016160061564, 0.029242016160061564, 0.03116583301269719, 0.03308964986533282, 0.033474413235859944, 0.03385917660638707, 0.03385917660638707, 0.034243939976914196, 0.03501346671796845, 0.035398230088495575, 0.03655252020007695, 0.03963062716429396, 0.04309349749903809, 0.04809542131589073, 0.15736821854559446, 0.5236629472874182], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_2.gap.json b/pfam_gap_rates/AAA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3038f7b75dc2ef5d4a5092aa41c4564267915027
--- /dev/null
+++ b/pfam_gap_rates/AAA_2.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_2", "n_seqs": 5000, "length": 226, "gap_rates": [0.511, 0.3244, 0.189, 0.172, 0.1326, 0.1238, 0.1178, 0.1142, 0.1104, 0.1046, 0.1014, 0.0978, 0.118, 0.1072, 0.0882, 0.0864, 0.0834, 0.077, 0.061, 0.0592, 0.0566, 0.056, 0.0548, 0.0532, 0.0536, 0.0552, 0.0542, 0.0542, 0.5502, 0.9094, 0.915, 0.9436, 0.948, 0.9186, 0.9128, 0.8986, 0.3712, 0.3624, 0.3602, 0.3552, 0.0202, 0.0184, 0.0182, 0.0178, 0.0176, 0.0172, 0.016, 0.016, 0.016, 0.016, 0.0162, 0.0162, 0.731, 0.7314, 0.7312, 0.7304, 0.6048, 0.6036, 0.6032, 0.6024, 0.0168, 0.0166, 0.0166, 0.0164, 0.0168, 0.0164, 0.0164, 0.0158, 0.0162, 0.0168, 0.0184, 0.0202, 0.0208, 0.0212, 0.022, 0.0228, 0.0246, 0.0252, 0.0298, 0.0318, 0.0314, 0.406, 0.4088, 0.4138, 0.4184, 0.4218, 0.4256, 0.4222, 0.4202, 0.416, 0.4128, 0.4074, 0.4056, 0.0328, 0.0326, 0.033, 0.0328, 0.0322, 0.032, 0.0318, 0.0318, 0.0318, 0.0318, 0.0322, 0.0324, 0.6364, 0.7342, 0.7688, 0.6518, 0.636, 0.6352, 0.6352, 0.6348, 0.6348, 0.6344, 0.6344, 0.6334, 0.6332, 0.633, 0.0326, 0.0324, 0.032, 0.0318, 0.032, 0.0314, 0.0312, 0.031, 0.0316, 0.0316, 0.0318, 0.032, 0.0324, 0.0322, 0.0322, 0.032, 0.7514, 0.753, 0.7538, 0.7564, 0.7576, 0.7542, 0.7536, 0.7524, 0.7496, 0.0322, 0.035, 0.0388, 0.035, 0.7876, 0.1488, 0.0338, 0.033, 0.0332, 0.0332, 0.0332, 0.033, 0.033, 0.0332, 0.0332, 0.0332, 0.0322, 0.0326, 0.033, 0.033, 0.0332, 0.0336, 0.0336, 0.0338, 0.0342, 0.0346, 0.0354, 0.036, 0.2196, 0.219, 0.2238, 0.3672, 0.364, 0.4856, 0.5222, 0.5554, 0.6504, 0.7016, 0.7258, 0.7424, 0.7968, 0.9316, 0.9478, 0.9062, 0.7648, 0.7338, 0.7164, 0.6694, 0.5954, 0.5338, 0.5068, 0.4756, 0.2304, 0.1926, 0.18, 0.1746, 0.1722, 0.1688, 0.167, 0.1666, 0.1656, 0.1618, 0.1616, 0.162, 0.1616, 0.1618, 0.1618, 0.1614, 0.1612, 0.1602, 0.0476, 0.0478, 0.0482, 0.0484, 0.0486, 0.0494, 0.0502, 0.051, 0.0518, 0.0578, 0.1012, 0.4794], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_28.gap.json b/pfam_gap_rates/AAA_28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c27910c43b7f33ffbeef9cba118ed0c92614e71e
--- /dev/null
+++ b/pfam_gap_rates/AAA_28.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_28", "n_seqs": 754, "length": 219, "gap_rates": [0.4376657824933687, 0.11273209549071618, 0.07161803713527852, 0.05570291777188329, 0.05305039787798409, 0.05305039787798409, 0.046419098143236075, 0.046419098143236075, 0.046419098143236075, 0.04509283819628647, 0.04509283819628647, 0.04376657824933687, 0.042440318302387266, 0.042440318302387266, 0.04111405835543767, 0.03978779840848806, 0.03978779840848806, 0.03978779840848806, 0.03978779840848806, 0.03978779840848806, 0.9111405835543767, 0.9111405835543767, 0.889920424403183, 0.03978779840848806, 0.042440318302387266, 0.6962864721485411, 0.7679045092838196, 0.9177718832891246, 0.903183023872679, 0.746684350132626, 0.3328912466843501, 0.03978779840848806, 0.04111405835543767, 0.04111405835543767, 0.9230769230769231, 0.903183023872679, 0.03580901856763926, 0.034482758620689655, 0.8726790450928382, 0.850132625994695, 0.03183023872679045, 0.03183023872679045, 0.03183023872679045, 0.03183023872679045, 0.03050397877984085, 0.03050397877984085, 0.03183023872679045, 0.033156498673740056, 0.04774535809018567, 0.046419098143236075, 0.042440318302387266, 0.046419098143236075, 0.9151193633952255, 0.04376657824933687, 0.04111405835543767, 0.0610079575596817, 0.07427055702917772, 0.16047745358090185, 0.35543766578249336, 0.21750663129973474, 0.17374005305039789, 0.17374005305039789, 0.46816976127320953, 0.8156498673740054, 0.4151193633952255, 0.1273209549071618, 0.08885941644562334, 0.06631299734748011, 0.05172413793103448, 0.04774535809018567, 0.03978779840848806, 0.042440318302387266, 0.07692307692307693, 0.21087533156498675, 0.16047745358090185, 0.10079575596816977, 0.10344827586206896, 0.08222811671087533, 0.07559681697612732, 0.054376657824933686, 0.0623342175066313, 0.05968169761273209, 0.9283819628647215, 0.9323607427055703, 0.9496021220159151, 0.9456233421750663, 0.9310344827586207, 0.9230769230769231, 0.05570291777188329, 0.05570291777188329, 0.054376657824933686, 0.8209549071618037, 0.9403183023872679, 0.8978779840848806, 0.5822281167108754, 0.0649867374005305, 0.04111405835543767, 0.014588859416445624, 0.013262599469496022, 0.017241379310344827, 0.015915119363395226, 0.015915119363395226, 0.014588859416445624, 0.014588859416445624, 0.014588859416445624, 0.015915119363395226, 0.021220159151193633, 0.017241379310344827, 0.017241379310344827, 0.022546419098143235, 0.023872679045092837, 0.026525198938992044, 0.025198938992042442, 0.025198938992042442, 0.029177718832891247, 0.03050397877984085, 0.03050397877984085, 0.029177718832891247, 0.029177718832891247, 0.9310344827586207, 0.9336870026525199, 0.9403183023872679, 0.9482758620689655, 0.9429708222811671, 0.9363395225464191, 0.9336870026525199, 0.9310344827586207, 0.03050397877984085, 0.9084880636604774, 0.7440318302387268, 0.16710875331564987, 0.09151193633952255, 0.06631299734748011, 0.046419098143236075, 0.8474801061007957, 0.9111405835543767, 0.8116710875331565, 0.04774535809018567, 0.05702917771883289, 0.04907161803713528, 0.8275862068965517, 0.9045092838196287, 0.9429708222811671, 0.8793103448275862, 0.6883289124668435, 0.054376657824933686, 0.06763925729442971, 0.05968169761273209, 0.9310344827586207, 0.9005305039787799, 0.04774535809018567, 0.06763925729442971, 0.05305039787798409, 0.04111405835543767, 0.042440318302387266, 0.042440318302387266, 0.8129973474801061, 0.04376657824933687, 0.042440318302387266, 0.042440318302387266, 0.04376657824933687, 0.042440318302387266, 0.04376657824933687, 0.04509283819628647, 0.04774535809018567, 0.7586206896551724, 0.7851458885941645, 0.9018567639257294, 0.7997347480106101, 0.7758620689655172, 0.7095490716180372, 0.050397877984084884, 0.058355437665782495, 0.9045092838196287, 0.5742705570291777, 0.13925729442970822, 0.058355437665782495, 0.05570291777188329, 0.05172413793103448, 0.050397877984084884, 0.0623342175066313, 0.05570291777188329, 0.9310344827586207, 0.07427055702917772, 0.9496021220159151, 0.2002652519893899, 0.07029177718832891, 0.0610079575596817, 0.058355437665782495, 0.0610079575596817, 0.0610079575596817, 0.0623342175066313, 0.0649867374005305, 0.06631299734748011, 0.06631299734748011, 0.06763925729442971, 0.07161803713527852, 0.07427055702917772, 0.07559681697612732, 0.07559681697612732, 0.07692307692307693, 0.08355437665782493, 0.08753315649867374, 0.09946949602122016, 0.10212201591511937, 0.10875331564986737, 0.1286472148541114, 0.1419098143236074, 0.14456233421750664, 0.15119363395225463, 0.16710875331564987, 0.5437665782493368, 0.2440318302387268, 0.2612732095490716, 0.2864721485411141, 0.3103448275862069, 0.32891246684350134, 0.3753315649867374, 0.42838196286472147], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_5.gap.json b/pfam_gap_rates/AAA_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22e8caefd66aee022916e04a2afada405547a4d6
--- /dev/null
+++ b/pfam_gap_rates/AAA_5.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_5", "n_seqs": 5000, "length": 198, "gap_rates": [0.6492, 0.249, 0.1956, 0.1684, 0.1586, 0.1574, 0.156, 0.1544, 0.1534, 0.1518, 0.1512, 0.1504, 0.1484, 0.1468, 0.1456, 0.145, 0.1446, 0.1442, 0.1436, 0.1432, 0.1446, 0.146, 0.144, 0.7422, 0.7874, 0.932, 0.9416, 0.947, 0.94, 0.8708, 0.7648, 0.662, 0.1408, 0.1374, 0.1364, 0.1352, 0.134, 0.1328, 0.1304, 0.13, 0.129, 0.1266, 0.126, 0.1468, 0.1272, 0.1222, 0.1264, 0.1248, 0.1212, 0.118, 0.1168, 0.1142, 0.1124, 0.1116, 0.1114, 0.2638, 0.3898, 0.6788, 0.7684, 0.891, 0.9488, 0.939, 0.8744, 0.7422, 0.591, 0.2496, 0.1858, 0.15, 0.1162, 0.1086, 0.105, 0.104, 0.1026, 0.1014, 0.102, 0.1046, 0.1078, 0.142, 0.124, 0.1244, 0.1004, 0.6328, 0.645, 0.6724, 0.7068, 0.8272, 0.848, 0.9006, 0.91, 0.9156, 0.9226, 0.9318, 0.939, 0.9476, 0.9424, 0.9344, 0.9276, 0.9182, 0.9154, 0.9056, 0.8934, 0.8406, 0.7286, 0.6776, 0.6668, 0.641, 0.6166, 0.0928, 0.0918, 0.09, 0.0936, 0.09, 0.0904, 0.0906, 0.091, 0.0914, 0.0934, 0.0938, 0.285, 0.281, 0.2648, 0.933, 0.0988, 0.0986, 0.0988, 0.099, 0.099, 0.1, 0.1008, 0.1022, 0.1028, 0.1032, 0.1026, 0.1032, 0.1076, 0.1108, 0.1132, 0.1158, 0.118, 0.2076, 0.1988, 0.1528, 0.1496, 0.145, 0.1392, 0.135, 0.1362, 0.1426, 0.1414, 0.147, 0.1548, 0.3038, 0.7152, 0.8954, 0.8142, 0.785, 0.7786, 0.739, 0.8552, 0.8988, 0.9072, 0.9248, 0.9374, 0.9436, 0.9464, 0.942, 0.9326, 0.916, 0.9058, 0.8696, 0.8336, 0.1746, 0.154, 0.1526, 0.153, 0.155, 0.1564, 0.1602, 0.1662, 0.1732, 0.1808, 0.1876, 0.8604, 0.6744, 0.5448, 0.5368, 0.5332, 0.5142, 0.2894, 0.318, 0.3102, 0.3132, 0.313, 0.331, 0.34, 0.3496, 0.356, 0.505], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_6.gap.json b/pfam_gap_rates/AAA_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5918fd1c228c22b65c35630d080c67f5228cb95b
--- /dev/null
+++ b/pfam_gap_rates/AAA_6.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_6", "n_seqs": 2068, "length": 232, "gap_rates": [0.17746615087040618, 0.1532882011605416, 0.14893617021276595, 0.1465183752417795, 0.1455512572533849, 0.14458413926499034, 0.14264990328820115, 0.14168278529980657, 0.14168278529980657, 0.13588007736943908, 0.1344294003868472, 0.13297872340425532, 0.13249516441005801, 0.13152804642166344, 0.13056092843326886, 0.13007736943907156, 0.1286266924564797, 0.12717601547388782, 0.12475822050290135, 0.12234042553191489, 0.12427466150870406, 0.12475822050290135, 0.12669245647969052, 0.12717601547388782, 0.12620889748549324, 0.12717601547388782, 0.12524177949709864, 0.12379110251450677, 0.12330754352030948, 0.12379110251450677, 0.12330754352030948, 0.1218568665377176, 0.11895551257253385, 0.11992263056092843, 0.11847195357833655, 0.11750483558994197, 0.11702127659574468, 0.11702127659574468, 0.11605415860735009, 0.11605415860735009, 0.11605415860735009, 0.11363636363636363, 0.11363636363636363, 0.11218568665377177, 0.11315280464216634, 0.10976789168278529, 0.10976789168278529, 0.10976789168278529, 0.11073500967117988, 0.11121856866537717, 0.11218568665377177, 0.11121856866537717, 0.11170212765957446, 0.11363636363636363, 0.11460348162475822, 0.11605415860735009, 0.11750483558994197, 0.11992263056092843, 0.11943907156673114, 0.11992263056092843, 0.11943907156673114, 0.11992263056092843, 0.11943907156673114, 0.11943907156673114, 0.11895551257253385, 0.11895551257253385, 0.11943907156673114, 0.11992263056092843, 0.11798839458413926, 0.11798839458413926, 0.11702127659574468, 0.11750483558994197, 0.11411992263056092, 0.11460348162475822, 0.11508704061895551, 0.11411992263056092, 0.11315280464216634, 0.11266924564796905, 0.11266924564796905, 0.11411992263056092, 0.11460348162475822, 0.11460348162475822, 0.11363636363636363, 0.1155705996131528, 0.11411992263056092, 0.11460348162475822, 0.11508704061895551, 0.11460348162475822, 0.11315280464216634, 0.11460348162475822, 0.11460348162475822, 0.11411992263056092, 0.11363636363636363, 0.11411992263056092, 0.11460348162475822, 0.11460348162475822, 0.1155705996131528, 0.11702127659574468, 0.11460348162475822, 0.11411992263056092, 0.11315280464216634, 0.11363636363636363, 0.11702127659574468, 0.11895551257253385, 0.11992263056092843, 0.11895551257253385, 0.11798839458413926, 0.11750483558994197, 0.11895551257253385, 0.11943907156673114, 0.11895551257253385, 0.11847195357833655, 0.11847195357833655, 0.11847195357833655, 0.12088974854932302, 0.12572533849129594, 0.1281431334622824, 0.13007736943907156, 0.13152804642166344, 0.13297872340425532, 0.13297872340425532, 0.1286266924564797, 0.12427466150870406, 0.1218568665377176, 0.12088974854932302, 0.9124758220502901, 0.12088974854932302, 0.11992263056092843, 0.11750483558994197, 0.11798839458413926, 0.11798839458413926, 0.11895551257253385, 0.11847195357833655, 0.11798839458413926, 0.11798839458413926, 0.12282398452611218, 0.11798839458413926, 0.11508704061895551, 0.11460348162475822, 0.1165377176015474, 0.11508704061895551, 0.11218568665377177, 0.11266924564796905, 0.11702127659574468, 0.1165377176015474, 0.11750483558994197, 0.1218568665377176, 0.12040618955512572, 0.11750483558994197, 0.1155705996131528, 0.1165377176015474, 0.11605415860735009, 0.11605415860735009, 0.1155705996131528, 0.11508704061895551, 0.1155705996131528, 0.11411992263056092, 0.11605415860735009, 0.1165377176015474, 0.11702127659574468, 0.11750483558994197, 0.11798839458413926, 0.11847195357833655, 0.11943907156673114, 0.11460348162475822, 0.11460348162475822, 0.11266924564796905, 0.11218568665377177, 0.11266924564796905, 0.11363636363636363, 0.11363636363636363, 0.11266924564796905, 0.11315280464216634, 0.11411992263056092, 0.11411992263056092, 0.11460348162475822, 0.11315280464216634, 0.11411992263056092, 0.1155705996131528, 0.11508704061895551, 0.1165377176015474, 0.11798839458413926, 0.11895551257253385, 0.12040618955512572, 0.12137330754352031, 0.12282398452611218, 0.12475822050290135, 0.12475822050290135, 0.12427466150870406, 0.12379110251450677, 0.12330754352030948, 0.12427466150870406, 0.12475822050290135, 0.12717601547388782, 0.1276595744680851, 0.12911025145067698, 0.13056092843326886, 0.13056092843326886, 0.13201160541586074, 0.1344294003868472, 0.13539651837524178, 0.13684719535783366, 0.1387814313346228, 0.1387814313346228, 0.14264990328820115, 0.1470019342359768, 0.1470019342359768, 0.14941972920696325, 0.15038684719535783, 0.15087040618955513, 0.15087040618955513, 0.15087040618955513, 0.1518375241779497, 0.1528046421663443, 0.15232108317214701, 0.15377176015473887, 0.15473887814313347, 0.15522243713733075, 0.15522243713733075, 0.15618955512572533, 0.1581237911025145, 0.16247582205029013, 0.16972920696324953, 0.17117988394584138, 0.1769825918762089, 0.18665377176015474, 0.1958413926499033, 0.22195357833655707, 0.2558027079303675, 0.4661508704061896, 0.6286266924564797, 0.7142166344294004], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_assoc_2.gap.json b/pfam_gap_rates/AAA_assoc_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ddf5ff21c113d3526e9c434163c867a87c9f1ebb
--- /dev/null
+++ b/pfam_gap_rates/AAA_assoc_2.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_assoc_2", "n_seqs": 2264, "length": 90, "gap_rates": [0.8816254416961131, 0.6634275618374559, 0.30874558303886923, 0.18374558303886926, 0.13692579505300354, 0.06890459363957598, 0.06051236749116608, 0.0534452296819788, 0.04063604240282685, 0.03268551236749117, 0.01987632508833922, 0.009717314487632508, 0.009275618374558304, 0.009275618374558304, 0.009275618374558304, 0.0088339222614841, 0.008392226148409895, 0.008392226148409895, 0.0088339222614841, 0.0088339222614841, 0.008392226148409895, 0.008392226148409895, 0.007950530035335688, 0.007950530035335688, 0.007508833922261484, 0.007508833922261484, 0.007067137809187279, 0.007067137809187279, 0.007067137809187279, 0.007067137809187279, 0.007067137809187279, 0.015017667844522967, 0.01060070671378092, 0.0066254416961130744, 0.012809187279151944, 0.10556537102473498, 0.3365724381625442, 0.5225265017667845, 0.855565371024735, 0.8864840989399293, 0.9103356890459364, 0.9377208480565371, 0.9496466431095406, 0.9447879858657244, 0.9275618374558304, 0.8935512367491166, 0.8776501766784452, 0.6294169611307421, 0.3997349823321555, 0.25309187279151946, 0.07818021201413428, 0.0088339222614841, 0.0035335689045936395, 0.0030918727915194345, 0.00265017667844523, 0.00265017667844523, 0.00265017667844523, 0.00265017667844523, 0.00265017667844523, 0.0030918727915194345, 0.00265017667844523, 0.00530035335689046, 0.0017667844522968198, 0.0017667844522968198, 0.005742049469964664, 0.022084805653710248, 0.006183745583038869, 0.007067137809187279, 0.00265017667844523, 0.002208480565371025, 0.002208480565371025, 0.002208480565371025, 0.001325088339222615, 0.04196113074204947, 0.03489399293286219, 0.002208480565371025, 0.00265017667844523, 0.00265017667844523, 0.001325088339222615, 0.0017667844522968198, 0.002208480565371025, 0.002208480565371025, 0.002208480565371025, 0.00265017667844523, 0.00265017667844523, 0.00265017667844523, 0.0030918727915194345, 0.0030918727915194345, 0.0030918727915194345, 0.006183745583038869], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AARP2CN.gap.json b/pfam_gap_rates/AARP2CN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f09e0912409362a63cce4f52dd8ee50fc780d38
--- /dev/null
+++ b/pfam_gap_rates/AARP2CN.gap.json
@@ -0,0 +1 @@
+{"family": "AARP2CN", "n_seqs": 634, "length": 89, "gap_rates": [0.2917981072555205, 0.18454258675078863, 0.10883280757097792, 0.06309148264984227, 0.04258675078864353, 0.031545741324921134, 0.031545741324921134, 0.02996845425867508, 0.02996845425867508, 0.02996845425867508, 0.028391167192429023, 0.026813880126182965, 0.026813880126182965, 0.03627760252365931, 0.9006309148264984, 0.026813880126182965, 0.01892744479495268, 0.02050473186119874, 0.01892744479495268, 0.01892744479495268, 0.017350157728706624, 0.015772870662460567, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.011041009463722398, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.01892744479495268, 0.022082018927444796, 0.028391167192429023, 0.052050473186119876, 0.0694006309148265, 0.07728706624605679, 0.08990536277602523, 0.10883280757097792, 0.12618296529968454, 0.4794952681388013, 0.9211356466876972, 0.46529968454258674, 0.44637223974763407, 0.4384858044164038, 0.42586750788643535, 0.32018927444794953, 0.23817034700315456, 0.1498422712933754, 0.12460567823343849, 0.04100946372239748, 0.017350157728706624, 0.012618296529968454, 0.011041009463722398, 0.011041009463722398, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.8438485804416404, 0.017350157728706624, 0.017350157728706624, 0.017350157728706624, 0.02050473186119874, 0.017350157728706624, 0.01892744479495268, 0.02050473186119874, 0.02050473186119874, 0.02050473186119874, 0.02050473186119874, 0.02050473186119874, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.025236593059936908, 0.025236593059936908, 0.028391167192429023, 0.0473186119873817, 0.07728706624605679, 0.167192429022082, 0.25236593059936907, 0.27129337539432175], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ABC1.gap.json b/pfam_gap_rates/ABC1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d868c3031e5106c1cbaed137675d164d71106601
--- /dev/null
+++ b/pfam_gap_rates/ABC1.gap.json
@@ -0,0 +1 @@
+{"family": "ABC1", "n_seqs": 3980, "length": 135, "gap_rates": [0.8155778894472362, 0.31532663316582915, 0.2379396984924623, 0.1984924623115578, 0.18693467336683417, 0.15175879396984926, 0.13693467336683418, 0.12487437185929648, 0.11105527638190955, 0.10276381909547738, 0.09949748743718594, 0.0949748743718593, 0.08618090452261307, 0.08065326633165829, 0.06633165829145729, 0.06281407035175879, 0.08919597989949749, 0.05577889447236181, 0.05402010050251256, 0.053768844221105526, 0.053266331658291456, 0.05301507537688442, 0.05251256281407035, 0.05150753768844221, 0.05100502512562814, 0.04924623115577889, 0.04924623115577889, 0.05050251256281407, 0.05025125628140704, 0.05075376884422111, 0.05251256281407035, 0.057035175879396986, 0.07261306532663317, 0.770854271356784, 0.06959798994974874, 0.9278894472361809, 0.9394472361809045, 0.9221105527638191, 0.06482412060301508, 0.05, 0.9133165829145728, 0.9396984924623115, 0.949748743718593, 0.9304020100502512, 0.9082914572864321, 0.04170854271356784, 0.04020100502512563, 0.04020100502512563, 0.039447236180904524, 0.039447236180904524, 0.03969849246231156, 0.04095477386934673, 0.040452261306532664, 0.039949748743718594, 0.040452261306532664, 0.04095477386934673, 0.0407035175879397, 0.04170854271356784, 0.04246231155778894, 0.04120603015075377, 0.04195979899497487, 0.04195979899497487, 0.04221105527638191, 0.04221105527638191, 0.04195979899497487, 0.04221105527638191, 0.04246231155778894, 0.04246231155778894, 0.04296482412060301, 0.04321608040201005, 0.043718592964824124, 0.0449748743718593, 0.08190954773869347, 0.06407035175879397, 0.059547738693467335, 0.05577889447236181, 0.05226130653266332, 0.05552763819095478, 0.05879396984924623, 0.06432160804020101, 0.05628140703517588, 0.05979899497487437, 0.9442211055276382, 0.5972361809045226, 0.4482412060301508, 0.38894472361809046, 0.06658291457286432, 0.06105527638190955, 0.05452261306532663, 0.05351758793969849, 0.05301507537688442, 0.05251256281407035, 0.05226130653266332, 0.05201005025125628, 0.05226130653266332, 0.05301507537688442, 0.052763819095477386, 0.05301507537688442, 0.053266331658291456, 0.054271356783919596, 0.054271356783919596, 0.05402010050251256, 0.05452261306532663, 0.05452261306532663, 0.0550251256281407, 0.05527638190954774, 0.05577889447236181, 0.05603015075376885, 0.05603015075376885, 0.056532663316582916, 0.05778894472361809, 0.05778894472361809, 0.058542713567839195, 0.058542713567839195, 0.060552763819095475, 0.061809045226130656, 0.06683417085427136, 0.07035175879396985, 0.07814070351758794, 0.0899497487437186, 0.10050251256281408, 0.11080402010050251, 0.8806532663316583, 0.9402010050251256, 0.9027638190954774, 0.8620603015075377, 0.12562814070351758, 0.9489949748743719, 0.1306532663316583, 0.13517587939698492, 0.14246231155778893, 0.14773869346733667, 0.17160804020100504, 0.26532663316582916, 0.6587939698492462], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_membrane.gap.json b/pfam_gap_rates/ABC_membrane.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae9e89d4d54a37df2477ffdb1989703483af2ad9
--- /dev/null
+++ b/pfam_gap_rates/ABC_membrane.gap.json
@@ -0,0 +1 @@
+{"family": "ABC_membrane", "n_seqs": 5000, "length": 298, "gap_rates": [0.8826, 0.6316, 0.4852, 0.3842, 0.3236, 0.288, 0.2656, 0.2522, 0.241, 0.2324, 0.227, 0.2202, 0.2104, 0.206, 0.2032, 0.2006, 0.1952, 0.1918, 0.1872, 0.1834, 0.1814, 0.178, 0.1742, 0.1706, 0.1684, 0.1674, 0.165, 0.1636, 0.162, 0.165, 0.1708, 0.3184, 0.9334, 0.9038, 0.2114, 0.2114, 0.2034, 0.2092, 0.1704, 0.7118, 0.8074, 0.851, 0.8844, 0.907, 0.9242, 0.9358, 0.945, 0.9418, 0.93, 0.9164, 0.8948, 0.8726, 0.8336, 0.7698, 0.6762, 0.5724, 0.4822, 0.1592, 0.1406, 0.1238, 0.1042, 0.099, 0.095, 0.0916, 0.0898, 0.0888, 0.088, 0.0878, 0.0866, 0.0848, 0.0842, 0.0838, 0.084, 0.0834, 0.0826, 0.0822, 0.0826, 0.0826, 0.0818, 0.0814, 0.081, 0.0808, 0.0832, 0.9466, 0.918, 0.083, 0.0794, 0.0778, 0.0768, 0.0748, 0.073, 0.071, 0.07, 0.069, 0.0688, 0.0692, 0.0674, 0.0674, 0.0662, 0.0656, 0.066, 0.0652, 0.0646, 0.0634, 0.0636, 0.0636, 0.0636, 0.078, 0.076, 0.0706, 0.0716, 0.0712, 0.0676, 0.0646, 0.9174, 0.8898, 0.0554, 0.0482, 0.0464, 0.0466, 0.0438, 0.043, 0.0462, 0.0428, 0.041, 0.0394, 0.074, 0.0518, 0.0382, 0.0374, 0.0372, 0.0484, 0.0402, 0.0376, 0.0382, 0.0366, 0.0372, 0.0372, 0.0376, 0.0398, 0.0358, 0.0368, 0.036, 0.0354, 0.035, 0.0362, 0.0362, 0.0346, 0.034, 0.0344, 0.0336, 0.0334, 0.0436, 0.0354, 0.0346, 0.035, 0.034, 0.0342, 0.034, 0.0334, 0.0336, 0.0334, 0.0332, 0.0458, 0.0958, 0.0572, 0.0342, 0.0326, 0.032, 0.0322, 0.0324, 0.032, 0.0322, 0.032, 0.0328, 0.0324, 0.032, 0.0324, 0.0328, 0.0326, 0.0344, 0.0358, 0.0358, 0.0364, 0.0366, 0.0376, 0.0374, 0.0374, 0.0382, 0.0384, 0.0386, 0.0392, 0.039, 0.0394, 0.0382, 0.0382, 0.037, 0.0364, 0.036, 0.0388, 0.0388, 0.0384, 0.038, 0.0382, 0.038, 0.0388, 0.0384, 0.0384, 0.0388, 0.0392, 0.039, 0.039, 0.0392, 0.0398, 0.0402, 0.04, 0.04, 0.0404, 0.0408, 0.0408, 0.0418, 0.0422, 0.0426, 0.0432, 0.0436, 0.0444, 0.045, 0.0452, 0.046, 0.0464, 0.0474, 0.0472, 0.0486, 0.0496, 0.0494, 0.0512, 0.0514, 0.0546, 0.065, 0.057, 0.0568, 0.0566, 0.057, 0.0574, 0.0576, 0.0586, 0.0584, 0.0592, 0.0598, 0.0608, 0.0612, 0.061, 0.0626, 0.0626, 0.0624, 0.0632, 0.0636, 0.0638, 0.0646, 0.0656, 0.0662, 0.066, 0.0678, 0.0692, 0.149, 0.1154, 0.1104, 0.1026, 0.092, 0.0944, 0.1012, 0.1096, 0.1548, 0.1428, 0.9494, 0.142, 0.9468, 0.1374, 0.133, 0.1374, 0.1422, 0.145, 0.1484, 0.2802, 0.2764, 0.1712, 0.1776, 0.1862, 0.2054, 0.2222, 0.2504, 0.2902, 0.3462, 0.3758, 0.4324, 0.5112, 0.5862, 0.8074], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_tran_CTD.gap.json b/pfam_gap_rates/ABC_tran_CTD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5913255718397d9ea25731d7bfe99cb46548b34f
--- /dev/null
+++ b/pfam_gap_rates/ABC_tran_CTD.gap.json
@@ -0,0 +1 @@
+{"family": "ABC_tran_CTD", "n_seqs": 1989, "length": 71, "gap_rates": [0.4394167923579688, 0.3489190548014077, 0.29411764705882354, 0.20864756158873807, 0.15987933634992457, 0.10558069381598793, 0.05077928607340372, 0.026143790849673203, 0.019105077928607342, 0.011563599798893917, 0.008044243338360985, 0.004524886877828055, 0.0030165912518853697, 0.0030165912518853697, 0.0030165912518853697, 0.002513826043237808, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.001005530417295123, 0.0, 0.0, 0.002011060834590246, 0.002011060834590246, 0.01860231271995978, 0.3102061337355455, 0.3102061337355455, 0.893413775766717, 0.03720462543991956, 0.023629964806435394, 0.015082956259426848, 0.7782805429864253, 0.021618903971845148, 0.009552538964303671, 0.005027652086475616, 0.004524886877828055, 0.002011060834590246, 0.002011060834590246, 0.002513826043237808, 0.002011060834590246, 0.0015082956259426848, 0.0015082956259426848, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002011060834590246, 0.002513826043237808, 0.005027652086475616, 0.04776269482151835, 0.1111111111111111, 0.19205630970336854, 0.5560583207642031], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AIF_C.gap.json b/pfam_gap_rates/AIF_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a89be8eb8ec1914cddfa71aa25c8f94107ff0c3
--- /dev/null
+++ b/pfam_gap_rates/AIF_C.gap.json
@@ -0,0 +1 @@
+{"family": "AIF_C", "n_seqs": 161, "length": 138, "gap_rates": [0.36024844720496896, 0.34782608695652173, 0.34782608695652173, 0.34782608695652173, 0.33540372670807456, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.3167701863354037, 0.3167701863354037, 0.32298136645962733, 0.3167701863354037, 0.3167701863354037, 0.3167701863354037, 0.3167701863354037, 0.3167701863354037, 0.3167701863354037, 0.3167701863354037, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.3167701863354037, 0.37888198757763975, 0.30434782608695654, 0.3105590062111801, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.3105590062111801, 0.3105590062111801, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.3167701863354037, 0.3167701863354037, 0.32298136645962733, 0.35403726708074534, 0.37888198757763975, 0.391304347826087, 0.42857142857142855, 0.4409937888198758, 0.484472049689441, 0.5279503105590062, 0.5527950310559007, 0.5962732919254659, 0.6459627329192547, 0.6521739130434783, 0.6521739130434783, 0.6335403726708074, 0.6273291925465838, 0.6273291925465838, 0.6273291925465838, 0.6335403726708074, 0.6335403726708074, 0.6149068322981367, 0.6024844720496895, 0.6086956521739131, 0.6086956521739131, 0.6086956521739131, 0.6086956521739131, 0.6086956521739131, 0.6086956521739131, 0.6086956521739131, 0.6086956521739131, 0.6086956521739131, 0.6211180124223602, 0.6149068322981367, 0.6149068322981367, 0.6086956521739131, 0.6211180124223602, 0.6335403726708074, 0.6459627329192547, 0.6459627329192547, 0.9440993788819876, 0.9440993788819876, 0.9440993788819876, 0.9440993788819876, 0.9440993788819876, 0.937888198757764, 0.8695652173913043, 0.7515527950310559, 0.7142857142857143, 0.6708074534161491, 0.6211180124223602, 0.5962732919254659, 0.5590062111801242, 0.546583850931677, 0.5279503105590062, 0.4968944099378882, 0.4658385093167702, 0.42857142857142855, 0.39751552795031053, 0.391304347826087, 0.37267080745341613, 0.36024844720496896, 0.34782608695652173, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.32298136645962733, 0.33540372670807456, 0.33540372670807456, 0.9254658385093167, 0.33540372670807456, 0.33540372670807456, 0.3416149068322981, 0.3416149068322981, 0.3416149068322981, 0.3416149068322981, 0.3416149068322981, 0.3416149068322981, 0.35403726708074534, 0.42857142857142855, 0.7080745341614907], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AIP3.gap.json b/pfam_gap_rates/AIP3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6caf6e96904508238fa3a35067e846824215941
--- /dev/null
+++ b/pfam_gap_rates/AIP3.gap.json
@@ -0,0 +1 @@
+{"family": "AIP3", "n_seqs": 283, "length": 534, "gap_rates": [0.24734982332155478, 0.24381625441696114, 0.24381625441696114, 0.24381625441696114, 0.24028268551236748, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.7526501766784452, 0.784452296819788, 0.4664310954063604, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.23674911660777384, 0.2332155477031802, 0.2332155477031802, 0.22968197879858657, 0.22614840989399293, 0.22614840989399293, 0.22614840989399293, 0.22614840989399293, 0.22614840989399293, 0.22614840989399293, 0.22968197879858657, 0.22614840989399293, 0.6289752650176679, 0.5441696113074205, 0.22614840989399293, 0.22614840989399293, 0.24734982332155478, 0.22968197879858657, 0.22968197879858657, 0.24381625441696114, 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\ No newline at end of file
diff --git a/pfam_gap_rates/AIRS.gap.json b/pfam_gap_rates/AIRS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d65ab3f5182b7f5564cd1762a2ad1eccf2b0926
--- /dev/null
+++ b/pfam_gap_rates/AIRS.gap.json
@@ -0,0 +1 @@
+{"family": "AIRS", "n_seqs": 5000, "length": 150, "gap_rates": [0.6712, 0.5296, 0.498, 0.41, 0.8164, 0.8238, 0.8326, 0.846, 0.906, 0.8358, 0.8296, 0.8178, 0.814, 0.2826, 0.7446, 0.7452, 0.7552, 0.7684, 0.9358, 0.8684, 0.7572, 0.7516, 0.7448, 0.7438, 0.177, 0.1634, 0.1414, 0.1286, 0.1234, 0.4298, 0.3836, 0.3772, 0.363, 0.2372, 0.0608, 0.0524, 0.0458, 0.9196, 0.9314, 0.9234, 0.9158, 0.0526, 0.0514, 0.0534, 0.0574, 0.0128, 0.5506, 0.5648, 0.7566, 0.7634, 0.9324, 0.937, 0.938, 0.9404, 0.94, 0.9372, 0.9356, 0.8448, 0.761, 0.7536, 0.554, 0.5438, 0.425, 0.007, 0.0062, 0.0056, 0.005, 0.0042, 0.004, 0.0038, 0.0028, 0.0026, 0.0026, 0.0026, 0.0024, 0.0022, 0.0018, 0.0012, 0.0012, 0.0018, 0.0018, 0.0018, 0.0018, 0.0018, 0.0026, 0.002, 0.0012, 0.0012, 0.0012, 0.0016, 0.002, 0.0018, 0.0036, 0.0222, 0.3488, 0.6706, 0.9376, 0.6752, 0.603, 0.0262, 0.004, 0.0022, 0.002, 0.0028, 0.0028, 0.0026, 0.0026, 0.0026, 0.0028, 0.0028, 0.0028, 0.0028, 0.0028, 0.0028, 0.0028, 0.0028, 0.0034, 0.0034, 0.0038, 0.0038, 0.004, 0.0038, 0.0038, 0.0042, 0.0052, 0.0054, 0.0066, 0.007, 0.0076, 0.009, 0.0128, 0.049, 0.3078, 0.3504, 0.59, 0.8552, 0.5056, 0.3162, 0.2596, 0.0216, 0.0282, 0.0288, 0.031, 0.0382, 0.0432, 0.0468, 0.0528, 0.0616, 0.1298, 0.4686], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AMMECR1.gap.json b/pfam_gap_rates/AMMECR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..881ab9fb6181a17dd2819259aad11b1ddc057d83
--- /dev/null
+++ b/pfam_gap_rates/AMMECR1.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/ANAPC_CDC26.gap.json b/pfam_gap_rates/ANAPC_CDC26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5afebc024111bfe1df815ceaee210fe0ac495d4
--- /dev/null
+++ b/pfam_gap_rates/ANAPC_CDC26.gap.json
@@ -0,0 +1 @@
+{"family": "ANAPC_CDC26", "n_seqs": 114, "length": 96, "gap_rates": [0.05263157894736842, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008771929824561403, 0.6929824561403509, 0.7807017543859649, 0.8421052631578947, 0.8859649122807017, 0.8947368421052632, 0.9210526315789473, 0.9298245614035088, 0.9385964912280702, 0.9385964912280702, 0.9298245614035088, 0.9298245614035088, 0.8947368421052632, 0.8947368421052632, 0.868421052631579, 0.8245614035087719, 0.7368421052631579, 0.6929824561403509, 0.008771929824561403, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03508771929824561, 0.043859649122807015, 0.05263157894736842, 0.06140350877192982, 0.07894736842105263, 0.07017543859649122, 0.10526315789473684, 0.14912280701754385, 0.17543859649122806, 0.21052631578947367, 0.23684210526315788, 0.24561403508771928, 0.21929824561403508, 0.23684210526315788, 0.2807017543859649, 0.2982456140350877, 0.3157894736842105, 0.32456140350877194, 0.38596491228070173, 0.40350877192982454, 0.42105263157894735, 0.49122807017543857, 0.4824561403508772, 0.4824561403508772, 0.5087719298245614, 0.5350877192982456, 0.8508771929824561, 0.9298245614035088, 0.9385964912280702, 0.9035087719298246, 0.7982456140350878, 0.7280701754385965, 0.7280701754385965, 0.7105263157894737, 0.6403508771929824, 0.6140350877192983, 0.5964912280701754, 0.5877192982456141, 0.6140350877192983, 0.631578947368421, 0.6403508771929824, 0.6491228070175439, 0.6578947368421053, 0.6842105263157895, 0.6842105263157895, 0.6842105263157895, 0.8070175438596491, 0.7456140350877193, 0.7719298245614035, 0.7982456140350878, 0.8596491228070176], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ANATO.gap.json b/pfam_gap_rates/ANATO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bec1ba67c85ed7832a2dfc2a81510a3178f5f36
--- /dev/null
+++ b/pfam_gap_rates/ANATO.gap.json
@@ -0,0 +1 @@
+{"family": "ANATO", "n_seqs": 104, "length": 38, "gap_rates": [0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.0, 0.0, 0.8557692307692307, 0.0, 0.0, 0.21153846153846154, 0.019230769230769232, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0673076923076923, 0.17307692307692307, 0.9134615384615384, 0.057692307692307696, 0.019230769230769232, 0.028846153846153848, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/APG12.gap.json b/pfam_gap_rates/APG12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a232cf0b9a0e81adf9fde7244142231a509f809
--- /dev/null
+++ b/pfam_gap_rates/APG12.gap.json
@@ -0,0 +1 @@
+{"family": "APG12", "n_seqs": 259, "length": 88, "gap_rates": [0.138996138996139, 0.04247104247104247, 0.03861003861003861, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03088803088803089, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.011583011583011582, 0.019305019305019305, 0.1891891891891892, 0.2277992277992278, 0.2084942084942085, 0.05405405405405406, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.03474903474903475, 0.03861003861003861, 0.03861003861003861, 0.04247104247104247, 0.04247104247104247, 0.05019305019305019, 0.04247104247104247, 0.04247104247104247, 0.04247104247104247, 0.04247104247104247, 0.04247104247104247, 0.04247104247104247, 0.04247104247104247, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.05019305019305019, 0.05405405405405406, 0.08108108108108109, 0.11196911196911197, 0.11969111969111969, 0.8185328185328186, 0.1274131274131274, 0.1274131274131274, 0.1274131274131274, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.138996138996139, 0.15057915057915058, 0.16216216216216217, 0.16216216216216217, 0.16602316602316602, 0.16988416988416988, 0.16988416988416988, 0.1969111969111969], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ARS2.gap.json b/pfam_gap_rates/ARS2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3f51e7eaa621ee1c0c3b3eb44ad2c2231c1a7f3
--- /dev/null
+++ b/pfam_gap_rates/ARS2.gap.json
@@ -0,0 +1 @@
+{"family": "ARS2", "n_seqs": 304, "length": 245, "gap_rates": [0.7697368421052632, 0.756578947368421, 0.7467105263157895, 0.7236842105263158, 0.7171052631578947, 0.6973684210526315, 0.7072368421052632, 0.6546052631578947, 0.6085526315789473, 0.5657894736842105, 0.5164473684210527, 0.4605263157894737, 0.4309210526315789, 0.9473684210526315, 0.944078947368421, 0.24342105263157895, 0.21710526315789475, 0.20723684210526316, 0.1875, 0.1875, 0.18421052631578946, 0.1875, 0.19078947368421054, 0.17105263157894737, 0.16776315789473684, 0.16776315789473684, 0.16447368421052633, 0.16447368421052633, 0.16447368421052633, 0.17105263157894737, 0.14473684210526316, 0.14473684210526316, 0.1513157894736842, 0.20723684210526316, 0.22697368421052633, 0.17434210526315788, 0.18092105263157895, 0.6414473684210527, 0.6151315789473685, 0.5953947368421053, 0.12171052631578948, 0.10855263157894737, 0.10526315789473684, 0.09868421052631579, 0.08552631578947369, 0.08552631578947369, 0.07894736842105263, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ASCH.gap.json b/pfam_gap_rates/ASCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5334226b91278e5713284d034acd318f25a1388
--- /dev/null
+++ b/pfam_gap_rates/ASCH.gap.json
@@ -0,0 +1 @@
+{"family": "ASCH", "n_seqs": 838, "length": 161, "gap_rates": [0.5692124105011933, 0.43914081145584727, 0.31026252983293556, 0.2529832935560859, 0.15035799522673032, 0.09427207637231504, 0.9367541766109785, 0.9379474940334129, 0.9355608591885441, 0.05369928400954654, 0.0441527446300716, 0.032219570405727926, 0.028639618138424822, 0.026252983293556086, 0.02386634844868735, 0.022673031026252982, 0.02028639618138425, 0.01909307875894988, 0.02028639618138425, 0.01909307875894988, 0.015513126491646777, 0.015513126491646777, 0.6766109785202864, 0.6945107398568019, 0.7040572792362768, 0.698090692124105, 0.6837708830548926, 0.6718377088305489, 0.014319809069212411, 0.025059665871121718, 0.06324582338902147, 0.011933174224343675, 0.011933174224343675, 0.010739856801909307, 0.011933174224343675, 0.3627684964200477, 0.33770883054892603, 0.3317422434367542, 0.18854415274463007, 0.36634844868735084, 0.03341288782816229, 0.015513126491646777, 0.014319809069212411, 0.011933174224343675, 0.010739856801909307, 0.017899761336515514, 0.5178997613365155, 0.5047732696897375, 0.06682577565632458, 0.04295942720763723, 0.6945107398568019, 0.7004773269689738, 0.7219570405727923, 0.7255369928400954, 0.7386634844868735, 0.7410501193317423, 0.7410501193317423, 0.7482100238663485, 0.7649164677804295, 0.7756563245823389, 0.7911694510739857, 0.7947494033412887, 0.8102625298329356, 0.8400954653937948, 0.9069212410501193, 0.9284009546539379, 0.9176610978520287, 0.8747016706443914, 0.8293556085918854, 0.7959427207637232, 0.7935560859188544, 0.7780429594272077, 0.7696897374701671, 0.7589498806682577, 0.7458233890214797, 0.7410501193317423, 0.7386634844868735, 0.7303102625298329, 0.7243436754176611, 0.7124105011933174, 0.698090692124105, 0.6897374701670644, 0.09785202863961814, 0.06801909307875895, 0.06324582338902147, 0.06563245823389022, 0.059665871121718374, 0.05489260143198091, 0.02386634844868735, 0.02028639618138425, 0.02028639618138425, 0.02028639618138425, 0.02028639618138425, 0.02028639618138425, 0.02386634844868735, 0.027446300715990454, 0.0513126491646778, 0.059665871121718374, 0.057279236276849645, 0.8723150357995226, 0.9307875894988067, 0.9140811455847255, 0.6145584725536993, 0.07279236276849642, 0.09069212410501193, 0.09665871121718377, 0.11575178997613365, 0.1324582338902148, 0.15513126491646778, 0.16467780429594273, 0.16825775656324582, 0.18257756563245822, 0.19928400954653938, 0.20883054892601433, 0.4045346062052506, 0.3723150357995227, 0.3615751789976134, 0.3448687350835322, 0.5787589498806682, 0.9200477326968973, 0.6181384248210023, 0.4606205250596659, 0.3627684964200477, 0.35799522673031026, 0.3568019093078759, 0.35918854415274465, 0.3568019093078759, 0.34725536992840095, 0.3412887828162291, 0.34009546539379476, 0.3329355608591885, 0.3341288782816229, 0.3353221957040573, 0.3317422434367542, 0.3353221957040573, 0.32100238663484487, 0.32100238663484487, 0.33890214797136037, 0.4009546539379475, 0.4606205250596659, 0.6109785202863962, 0.6801909307875895, 0.7362768496420048, 0.7577565632458234, 0.7183770883054893, 0.6479713603818615, 0.5978520286396182, 0.4713603818615752, 0.40572792362768495, 0.4021479713603819, 0.4009546539379475, 0.4021479713603819, 0.4081145584725537, 0.4152744630071599, 0.4224343675417661, 0.4331742243436754, 0.4451073985680191, 0.49522673031026254, 0.5346062052505967, 0.6145584725536993, 0.8102625298329356], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ASH.gap.json b/pfam_gap_rates/ASH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66b13626ffffb8c76848351b12683cf9fc3ea8f5
--- /dev/null
+++ b/pfam_gap_rates/ASH.gap.json
@@ -0,0 +1 @@
+{"family": "ASH", "n_seqs": 342, "length": 105, "gap_rates": [0.9444444444444444, 0.8245614035087719, 0.7514619883040936, 0.7017543859649122, 0.6549707602339181, 0.6286549707602339, 0.6169590643274854, 0.7368421052631579, 0.6871345029239766, 0.6198830409356725, 0.4824561403508772, 0.9122807017543859, 0.1608187134502924, 0.10526315789473684, 0.07894736842105263, 0.04093567251461988, 0.038011695906432746, 0.029239766081871343, 0.05847953216374269, 0.02631578947368421, 0.02046783625730994, 0.017543859649122806, 0.017543859649122806, 0.014619883040935672, 0.011695906432748537, 0.008771929824561403, 0.008771929824561403, 0.0029239766081871343, 0.0029239766081871343, 0.8976608187134503, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.04093567251461988, 0.05263157894736842, 0.7309941520467836, 0.1111111111111111, 0.09064327485380116, 0.011695906432748537, 0.02046783625730994, 0.023391812865497075, 0.03216374269005848, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.34210526315789475, 0.1111111111111111, 0.06725146198830409, 0.03216374269005848, 0.005847953216374269, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.005847953216374269, 0.008771929824561403, 0.008771929824561403, 0.7368421052631579, 0.9298245614035088, 0.8245614035087719, 0.47953216374269003, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.008771929824561403, 0.017543859649122806, 0.03508771929824561, 0.05263157894736842, 0.07309941520467836, 0.07894736842105263, 0.09649122807017543, 0.10818713450292397, 0.11695906432748537, 0.12280701754385964, 0.1286549707602339, 0.16374269005847952, 0.20175438596491227, 0.2543859649122807, 0.30701754385964913, 0.4152046783625731, 0.5292397660818714, 0.6023391812865497, 0.6871345029239766, 0.7660818713450293, 0.8538011695906432], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATG16.gap.json b/pfam_gap_rates/ATG16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..afe45e33a0698f32edd61d65fc028df1a610ac6e
--- /dev/null
+++ b/pfam_gap_rates/ATG16.gap.json
@@ -0,0 +1 @@
+{"family": "ATG16", "n_seqs": 266, "length": 209, "gap_rates": [0.6654135338345865, 0.4398496240601504, 0.37593984962406013, 0.36466165413533835, 0.35714285714285715, 0.3533834586466165, 0.3533834586466165, 0.34962406015037595, 0.3458646616541353, 0.3458646616541353, 0.34210526315789475, 0.37593984962406013, 0.6954887218045113, 0.33458646616541354, 0.3308270676691729, 0.3308270676691729, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.31954887218045114, 0.31954887218045114, 0.31954887218045114, 0.31954887218045114, 0.32706766917293234, 0.31203007518796994, 0.3082706766917293, 0.2932330827067669, 0.2894736842105263, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2819548872180451, 0.2819548872180451, 0.2857142857142857, 0.2857142857142857, 0.2819548872180451, 0.2819548872180451, 0.39097744360902253, 0.38345864661654133, 0.39473684210526316, 0.46616541353383456, 0.4774436090225564, 0.4924812030075188, 0.5112781954887218, 0.5300751879699248, 0.5676691729323309, 0.6654135338345865, 0.6729323308270677, 0.7481203007518797, 0.6842105263157895, 0.6804511278195489, 0.6842105263157895, 0.6654135338345865, 0.7105263157894737, 0.6804511278195489, 0.6466165413533834, 0.5939849624060151, 0.5451127819548872, 0.5112781954887218, 0.4548872180451128, 0.43609022556390975, 0.39473684210526316, 0.40977443609022557, 0.41729323308270677, 0.45864661654135336, 0.5150375939849624, 0.5112781954887218, 0.8533834586466166, 0.8947368421052632, 0.9060150375939849, 0.8721804511278195, 0.8383458646616542, 0.6090225563909775, 0.5488721804511278, 0.4924812030075188, 0.4398496240601504, 0.38721804511278196, 0.34962406015037595, 0.2932330827067669, 0.2781954887218045, 0.24436090225563908, 0.18045112781954886, 0.15037593984962405, 0.13157894736842105, 0.10150375939849623, 0.09398496240601503, 0.08646616541353383, 0.08646616541353383, 0.08646616541353383, 0.09398496240601503, 0.09022556390977443, 0.09022556390977443, 0.08646616541353383, 0.08646616541353383, 0.08646616541353383, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.08646616541353383, 0.08646616541353383, 0.08646616541353383, 0.09022556390977443, 0.07894736842105263, 0.07894736842105263, 0.07142857142857142, 0.06766917293233082, 0.06766917293233082, 0.06015037593984962, 0.06015037593984962, 0.06015037593984962, 0.05639097744360902, 0.06015037593984962, 0.06015037593984962, 0.06015037593984962, 0.06015037593984962, 0.06015037593984962, 0.06390977443609022, 0.06390977443609022, 0.06015037593984962, 0.05639097744360902, 0.05639097744360902, 0.05639097744360902, 0.05639097744360902, 0.05639097744360902, 0.05639097744360902, 0.06015037593984962, 0.06390977443609022, 0.05639097744360902, 0.045112781954887216, 0.041353383458646614, 0.03759398496240601, 0.03383458646616541, 0.03007518796992481, 0.03007518796992481, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.04887218045112782, 0.045112781954887216, 0.03007518796992481, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.02631578947368421, 0.03007518796992481, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03759398496240601, 0.041353383458646614, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.04887218045112782, 0.04887218045112782, 0.04887218045112782, 0.04887218045112782, 0.04887218045112782, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.06015037593984962, 0.06015037593984962, 0.06390977443609022, 0.06766917293233082, 0.07518796992481203, 0.07518796992481203, 0.07518796992481203, 0.07894736842105263, 0.08270676691729323, 0.08270676691729323, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09398496240601503, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.12406015037593984, 0.12406015037593984, 0.12781954887218044], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-grasp_2.gap.json b/pfam_gap_rates/ATP-grasp_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20353771b6c9f35f76ea929fe16b447222fe394a
--- /dev/null
+++ b/pfam_gap_rates/ATP-grasp_2.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-grasp_2", "n_seqs": 2089, "length": 216, "gap_rates": [0.3370033508855912, 0.1450454763044519, 0.14025849688846337, 0.13786500718046912, 0.13738630923887027, 0.13738630923887027, 0.13547151747247488, 0.13403542364767831, 0.1302058401148875, 0.12876974629009094, 0.1273336524652944, 0.125418860698899, 0.12302537099090474, 0.12254667304930589, 0.12206797510770703, 0.12063188128291048, 0.11871708951651508, 0.11728099569171853, 0.11680229775011967, 0.11632359980852082, 0.11536620392532312, 0.11393011010052657, 0.11345141215892772, 0.10962182862613691, 0.10818573480134036, 0.10627094303494496, 0.10244135950215415, 0.10004786979415989, 0.09717568214456677, 0.09717568214456677, 0.09813307802776448, 0.09956917185256103, 0.09861177596936334, 0.1038774533269507, 0.10914313068453806, 0.1038774533269507, 0.10339875538535184, 0.9444710387745333, 0.9430349449497367, 0.09813307802776448, 0.0880804212541886, 0.07132599329822882, 0.05840114887505984, 0.22020105313547153, 0.04068932503590235, 0.03590234561991384, 0.03590234561991384, 0.036381043561512685, 0.03398755385351843, 0.03398755385351843, 0.03303015797032073, 0.02967927237912877, 0.02920057443752992, 0.02920057443752992, 0.02920057443752992, 0.03015797032072762, 0.02967927237912877, 0.030636668262326472, 0.6802297750119675, 0.6807084729535663, 0.6831019626615605, 0.8817616084250838, 0.9262805169937769, 0.9071325993298229, 0.6831019626615605, 0.681665868836764, 0.6802297750119675, 0.6802297750119675, 0.031115366203925323, 0.031594064145524174, 0.031594064145524174, 0.031594064145524174, 0.031594064145524174, 0.03207276208712303, 0.059837242699856394, 0.03781713738630924, 0.03446625179511728, 0.03303015797032073, 0.03398755385351843, 0.032551460028721876, 0.032551460028721876, 0.032551460028721876, 0.03398755385351843, 0.03398755385351843, 0.032551460028721876, 0.03207276208712303, 0.027285782671134514, 0.028243178554332216, 0.028721876495931067, 0.02920057443752992, 0.028721876495931067, 0.03207276208712303, 0.03542364767831498, 0.33556725706079465, 0.3307802776448061, 0.31450454763044516, 0.26280516993776926, 0.2786022020105314, 0.26902824317855434, 0.26232647199617043, 0.02920057443752992, 0.04547630445189086, 0.027285782671134514, 0.02489229296314026, 0.024413595021541407, 0.022977501196744854, 0.022498803255146003, 0.022498803255146003, 0.022977501196744854, 0.023456199138343705, 0.023934897079942556, 0.023456199138343705, 0.023934897079942556, 0.02489229296314026, 0.023934897079942556, 0.9478219243657252, 0.9468645284825276, 0.022977501196744854, 0.02202010531354715, 0.02202010531354715, 0.022498803255146003, 0.022498803255146003, 0.02202010531354715, 0.022498803255146003, 0.022498803255146003, 0.027764480612733365, 0.027285782671134514, 0.02537099090473911, 0.027285782671134514, 0.03829583532790809, 0.06749640976543801, 0.05887984681665869, 0.04164672091910005, 0.05313547151747248, 0.04978458592628052, 0.043561512685495456, 0.03207276208712303, 0.022977501196744854, 0.022977501196744854, 0.022498803255146003, 0.022498803255146003, 0.022977501196744854, 0.022498803255146003, 0.022498803255146003, 0.02202010531354715, 0.02202010531354715, 0.022498803255146003, 0.026328386787936812, 0.07563427477261848, 0.0832934418382001, 0.08903781713738632, 0.10339875538535184, 0.07324078506462423, 0.09191000478697942, 0.06749640976543801, 0.05792245093346099, 0.04691239827668741, 0.03350885591191958, 0.040210627094303494, 0.03542364767831498, 0.03350885591191958, 0.03542364767831498, 0.03829583532790809, 0.04451890856869316, 0.052178075634274776, 0.047391096218286265, 0.036381043561512685, 0.03542364767831498, 0.03350885591191958, 0.03446625179511728, 0.031115366203925323, 0.031115366203925323, 0.031115366203925323, 0.03015797032072762, 0.031115366203925323, 0.031594064145524174, 0.03303015797032073, 0.038774533269506944, 0.05696505505026329, 0.07707036859741503, 0.0627094303494495, 0.04643370033508856, 0.0421254188606989, 0.05887984681665869, 0.09573958831977022, 0.08568693154619435, 0.04978458592628052, 0.03829583532790809, 0.03398755385351843, 0.032551460028721876, 0.03303015797032073, 0.032551460028721876, 0.03207276208712303, 0.03207276208712303, 0.032551460028721876, 0.032551460028721876, 0.032551460028721876, 0.03303015797032073, 0.03303015797032073, 0.03303015797032073, 0.03303015797032073, 0.03350885591191958, 0.03350885591191958, 0.03350885591191958, 0.03350885591191958, 0.03350885591191958, 0.03350885591191958, 0.03398755385351843, 0.03398755385351843, 0.03398755385351843, 0.03446625179511728, 0.03446625179511728, 0.03542364767831498, 0.03733843944471039, 0.11680229775011967, 0.7261847774054572], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt.gap.json b/pfam_gap_rates/ATP-synt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98ef8bcf7fc575cd1871927c438968d8bd3300a8
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_DE.gap.json b/pfam_gap_rates/ATP-synt_DE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1db729e1d061960264122d6e71ffc48368c490b
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_DE.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_DE", "n_seqs": 959, "length": 51, "gap_rates": [0.443169968717414, 0.03128258602711158, 0.006256517205422315, 0.004171011470281543, 0.0031282586027111575, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9395203336809176, 0.927007299270073, 0.0, 0.4233576642335766, 0.014598540145985401, 0.03023983315954119, 0.33889468196037537, 0.9113660062565172, 0.8832116788321168, 0.010427528675703858, 0.0072992700729927005, 0.008342022940563087, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0010427528675703858, 0.0020855057351407717, 0.0020855057351407717, 0.0020855057351407717, 0.0020855057351407717, 0.0020855057351407717, 0.0031282586027111575, 0.0031282586027111575, 0.0072992700729927005, 0.01564129301355579, 0.072992700729927, 0.24191866527632952, 0.6100104275286757], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_I.gap.json b/pfam_gap_rates/ATP-synt_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46f1a805351fa2c79db07100ac914466e0aff58c
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_I.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_I", "n_seqs": 574, "length": 104, "gap_rates": [0.6829268292682927, 0.47909407665505227, 0.33797909407665505, 0.25435540069686413, 0.2073170731707317, 0.1602787456445993, 0.10975609756097561, 0.08885017421602788, 0.07491289198606271, 0.05574912891986063, 0.04878048780487805, 0.041811846689895474, 0.03832752613240418, 0.03484320557491289, 0.03484320557491289, 0.029616724738675958, 0.0313588850174216, 0.0313588850174216, 0.0313588850174216, 0.0313588850174216, 0.9407665505226481, 0.18466898954703834, 0.041811846689895474, 0.0313588850174216, 0.02613240418118467, 0.9425087108013938, 0.8780487804878049, 0.024390243902439025, 0.01916376306620209, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.008710801393728223, 0.006968641114982578, 0.005226480836236934, 0.005226480836236934, 0.005226480836236934, 0.005226480836236934, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.0017421602787456446, 0.0017421602787456446, 0.0017421602787456446, 0.003484320557491289, 0.003484320557491289, 0.45993031358885017, 0.39198606271777003, 0.2979094076655052, 0.04355400696864112, 0.01916376306620209, 0.12020905923344948, 0.09233449477351917, 0.06620209059233449, 0.059233449477351915, 0.8885017421602788, 0.45121951219512196, 0.3606271777003484, 0.02613240418118467, 0.008710801393728223, 0.005226480836236934, 0.02613240418118467, 0.05400696864111498, 0.2735191637630662, 0.17247386759581881, 0.06097560975609756, 0.02264808362369338, 0.0156794425087108, 0.013937282229965157, 0.010452961672473868, 0.006968641114982578, 0.006968641114982578, 0.005226480836236934, 0.005226480836236934, 0.006968641114982578, 0.005226480836236934, 0.005226480836236934, 0.005226480836236934, 0.005226480836236934, 0.006968641114982578, 0.005226480836236934, 0.005226480836236934, 0.005226480836236934, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.519163763066202, 0.024390243902439025, 0.0156794425087108, 0.01916376306620209, 0.020905923344947737, 0.02264808362369338, 0.024390243902439025, 0.027874564459930314, 0.03484320557491289, 0.033101045296167246, 0.04006968641114982, 0.06794425087108014, 0.10278745644599303, 0.4076655052264808], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_ab_Xtn.gap.json b/pfam_gap_rates/ATP-synt_ab_Xtn.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4967139f9784a928cd1569bff1734ce9ff34cd58
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_ab_Xtn.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_ab_Xtn", "n_seqs": 856, "length": 128, "gap_rates": [0.06074766355140187, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02570093457943925, 0.029205607476635514, 0.028037383177570093, 0.07476635514018691, 0.07476635514018691, 0.07126168224299065, 0.02570093457943925, 0.02102803738317757, 0.47079439252336447, 0.01985981308411215, 0.02102803738317757, 0.02102803738317757, 0.02102803738317757, 0.02102803738317757, 0.01985981308411215, 0.01985981308411215, 0.018691588785046728, 0.01985981308411215, 0.01985981308411215, 0.02102803738317757, 0.01985981308411215, 0.01985981308411215, 0.016355140186915886, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.016355140186915886, 0.8177570093457944, 0.610981308411215, 0.016355140186915886, 0.017523364485981307, 0.016355140186915886, 0.016355140186915886, 0.015186915887850467, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.017523364485981307, 0.017523364485981307, 0.016355140186915886, 0.016355140186915886, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.016355140186915886, 0.16238317757009346, 0.780373831775701, 0.018691588785046728, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.014018691588785047, 0.016355140186915886, 0.016355140186915886, 0.015186915887850467, 0.02102803738317757, 0.01985981308411215, 0.015186915887850467, 0.014018691588785047, 0.014018691588785047, 0.8901869158878505, 0.8714953271028038, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.016355140186915886, 0.2757009345794392, 0.017523364485981307, 0.016355140186915886, 0.016355140186915886, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.016355140186915886, 0.017523364485981307, 0.017523364485981307, 0.017523364485981307, 0.017523364485981307, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.029205607476635514, 0.038551401869158876, 0.04322429906542056, 0.6740654205607477, 0.10864485981308411, 0.09462616822429906, 0.08644859813084112, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02453271028037383, 0.02453271028037383, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.026869158878504672, 0.9310747663551402, 0.05023364485981308, 0.052570093457943924, 0.06775700934579439, 0.07126168224299065, 0.07710280373831775, 0.08878504672897196, 0.37616822429906543], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP_sub_h.gap.json b/pfam_gap_rates/ATP_sub_h.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c57c13fbffc243d604d1aacbd6cf2feef817701
--- /dev/null
+++ b/pfam_gap_rates/ATP_sub_h.gap.json
@@ -0,0 +1 @@
+{"family": "ATP_sub_h", "n_seqs": 128, "length": 72, "gap_rates": [0.1875, 0.1875, 0.1171875, 0.109375, 0.2265625, 0.6328125, 0.1015625, 0.09375, 0.078125, 0.046875, 0.0390625, 0.03125, 0.015625, 0.015625, 0.015625, 0.0078125, 0.0078125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0234375, 0.0859375, 0.0234375, 0.015625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0078125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015625, 0.015625, 0.5, 0.8984375, 0.859375, 0.015625, 0.015625, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.03125, 0.140625, 0.4765625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AZUL.gap.json b/pfam_gap_rates/AZUL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..998e2e747435d07515b24b0a2bd2ae6164d21210
--- /dev/null
+++ b/pfam_gap_rates/AZUL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/A_deamin.gap.json b/pfam_gap_rates/A_deamin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fef0e1be4ad4396a6648df7a005843ab987e9eba
--- /dev/null
+++ b/pfam_gap_rates/A_deamin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AbLIM_anchor.gap.json b/pfam_gap_rates/AbLIM_anchor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a93fe7ad432b2808db79193833c4920babab612f
--- /dev/null
+++ b/pfam_gap_rates/AbLIM_anchor.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AcetDehyd-dimer.gap.json b/pfam_gap_rates/AcetDehyd-dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d1a87c96d910a2141727abea719e2db4895c7c6
--- /dev/null
+++ b/pfam_gap_rates/AcetDehyd-dimer.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Acyl-ACP_TE.gap.json b/pfam_gap_rates/Acyl-ACP_TE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..236bdeb7877f2035e895b2c3a6f9b8df57920397
--- /dev/null
+++ b/pfam_gap_rates/Acyl-ACP_TE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Acyl_transf_1.gap.json b/pfam_gap_rates/Acyl_transf_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd4c5a0772a324bf4c1d84e84d34232519aec3ca
--- /dev/null
+++ b/pfam_gap_rates/Acyl_transf_1.gap.json
@@ -0,0 +1 @@
+{"family": "Acyl_transf_1", "n_seqs": 5000, "length": 364, "gap_rates": [0.7742, 0.321, 0.1444, 0.112, 0.1048, 0.1038, 0.1024, 0.1016, 0.1014, 0.1016, 0.1012, 0.1008, 0.1002, 0.0902, 0.0976, 0.092, 0.0874, 0.0886, 0.085, 0.0844, 0.0846, 0.2442, 0.1158, 0.1146, 0.0936, 0.089, 0.086, 0.0854, 0.0868, 0.089, 0.0916, 0.0934, 0.103, 0.1134, 0.1386, 0.2078, 0.2472, 0.245, 0.44, 0.2526, 0.1874, 0.1796, 0.0874, 0.0842, 0.0804, 0.0778, 0.0754, 0.0756, 0.0734, 0.0724, 0.0706, 0.0724, 0.2238, 0.7958, 0.8354, 0.8824, 0.9164, 0.926, 0.9392, 0.9406, 0.9372, 0.9226, 0.9082, 0.8694, 0.8152, 0.724, 0.1516, 0.0796, 0.0644, 0.0632, 0.0608, 0.0604, 0.0618, 0.056, 0.0524, 0.0518, 0.0522, 0.0516, 0.0514, 0.0506, 0.0512, 0.0528, 0.0518, 0.0502, 0.053, 0.0532, 0.049, 0.0524, 0.053, 0.0522, 0.9374, 0.0596, 0.055, 0.057, 0.059, 0.8454, 0.9472, 0.9278, 0.7824, 0.0472, 0.045, 0.0436, 0.0428, 0.0422, 0.0406, 0.0394, 0.0392, 0.0396, 0.0396, 0.04, 0.04, 0.0398, 0.0396, 0.04, 0.0398, 0.0402, 0.0406, 0.0406, 0.0404, 0.0412, 0.0422, 0.0398, 0.0406, 0.0418, 0.0406, 0.0398, 0.0396, 0.0398, 0.0402, 0.0412, 0.0418, 0.0432, 0.046, 0.0426, 0.044, 0.0452, 0.0464, 0.049, 0.0556, 0.052, 0.0586, 0.0706, 0.6368, 0.5422, 0.0622, 0.0614, 0.0534, 0.0542, 0.0542, 0.0558, 0.056, 0.057, 0.0602, 0.059, 0.402, 0.6966, 0.869, 0.941, 0.9172, 0.764, 0.6072, 0.3194, 0.1222, 0.1318, 0.117, 0.1086, 0.105, 0.1058, 0.1062, 0.1054, 0.849, 0.9398, 0.4926, 0.102, 0.1002, 0.0992, 0.099, 0.0984, 0.0592, 0.059, 0.0588, 0.0588, 0.0588, 0.0588, 0.059, 0.059, 0.0598, 0.0604, 0.061, 0.0642, 0.063, 0.0634, 0.0664, 0.0644, 0.0624, 0.062, 0.0608, 0.0606, 0.0626, 0.0634, 0.0626, 0.0634, 0.0642, 0.0642, 0.0642, 0.0644, 0.0682, 0.0692, 0.0682, 0.7118, 0.1994, 0.0964, 0.0768, 0.0704, 0.068, 0.0662, 0.0662, 0.0664, 0.0664, 0.0664, 0.066, 0.0656, 0.0654, 0.0658, 0.066, 0.0664, 0.0668, 0.0672, 0.0676, 0.0696, 0.0704, 0.0726, 0.075, 0.0776, 0.078, 0.0784, 0.081, 0.0828, 0.083, 0.084, 0.8858, 0.0854, 0.0864, 0.1024, 0.0976, 0.0948, 0.0924, 0.0944, 0.094, 0.0936, 0.0946, 0.0966, 0.0998, 0.1008, 0.1012, 0.1042, 0.1066, 0.1108, 0.114, 0.115, 0.856, 0.9016, 0.9198, 0.8798, 0.7034, 0.1202, 0.117, 0.115, 0.1124, 0.1138, 0.1164, 0.1152, 0.1132, 0.1148, 0.1194, 0.1168, 0.1184, 0.1166, 0.1134, 0.1154, 0.1134, 0.1132, 0.113, 0.1136, 0.1152, 0.1164, 0.1168, 0.1192, 0.1206, 0.1242, 0.1274, 0.1302, 0.8826, 0.932, 0.909, 0.7902, 0.1948, 0.1826, 0.1556, 0.161, 0.165, 0.1684, 0.1722, 0.1722, 0.1726, 0.1754, 0.1816, 0.1944, 0.2014, 0.23, 0.239, 0.2444, 0.2508, 0.2712, 0.3012, 0.318, 0.3324, 0.353, 0.3774, 0.4154, 0.4334, 0.4508, 0.7028, 0.9264, 0.9464, 0.942, 0.9112, 0.7874, 0.713, 0.6948, 0.6826, 0.623, 0.6152, 0.623, 0.6276, 0.6328, 0.6368, 0.6412, 0.6544, 0.6452, 0.6482, 0.6498, 0.6544, 0.6582, 0.6628, 0.667, 0.9226, 0.701, 0.7052, 0.7112, 0.7168, 0.7256, 0.7332, 0.7394, 0.7492, 0.7562, 0.7622, 0.772, 0.7824, 0.7912, 0.8052, 0.818, 0.8614, 0.928], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Adaptin_binding.gap.json b/pfam_gap_rates/Adaptin_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00b732dd64cda2eb8f2c0cf9a3310d7e36748876
--- /dev/null
+++ b/pfam_gap_rates/Adaptin_binding.gap.json
@@ -0,0 +1 @@
+{"family": "Adaptin_binding", "n_seqs": 205, "length": 271, "gap_rates": [0.2780487804878049, 0.17560975609756097, 0.1073170731707317, 0.05853658536585366, 0.04878048780487805, 0.03414634146341464, 0.02926829268292683, 0.02926829268292683, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.024390243902439025, 0.03414634146341464, 0.04878048780487805, 0.03902439024390244, 0.07317073170731707, 0.09268292682926829, 0.14146341463414633, 0.18048780487804877, 0.2682926829268293, 0.25365853658536586, 0.22926829268292684, 0.22439024390243903, 0.25853658536585367, 0.28292682926829266, 0.2634146341463415, 0.3024390243902439, 0.3121951219512195, 0.2097560975609756, 0.4146341463414634, 0.44878048780487806, 0.4634146341463415, 0.48292682926829267, 0.5121951219512195, 0.551219512195122, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Adenyl_transf.gap.json b/pfam_gap_rates/Adenyl_transf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..94f839cf7742451e2a33d63e3ad674fbbad738da
--- /dev/null
+++ b/pfam_gap_rates/Adenyl_transf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Agenet.gap.json b/pfam_gap_rates/Agenet.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25e1ad08e6c78825d1d16f794b3816d3af918f81
--- /dev/null
+++ b/pfam_gap_rates/Agenet.gap.json
@@ -0,0 +1 @@
+{"family": "Agenet", "n_seqs": 638, "length": 86, "gap_rates": [0.2727272727272727, 0.14890282131661442, 0.09717868338557993, 0.06896551724137931, 0.05642633228840126, 0.04231974921630094, 0.03761755485893417, 0.06896551724137931, 0.07210031347962383, 0.9028213166144201, 0.8887147335423198, 0.13479623824451412, 0.12539184952978055, 0.10501567398119123, 0.07993730407523511, 0.08620689655172414, 0.023510971786833857, 0.11912225705329153, 0.007836990595611285, 0.007836990595611285, 0.009404388714733543, 0.009404388714733543, 0.007836990595611285, 0.007836990595611285, 0.006269592476489028, 0.006269592476489028, 0.006269592476489028, 0.774294670846395, 0.8981191222570533, 0.8652037617554859, 0.5344827586206896, 0.003134796238244514, 0.048589341692789965, 0.004702194357366771, 0.932601880877743, 0.004702194357366771, 0.004702194357366771, 0.004702194357366771, 0.003134796238244514, 0.004702194357366771, 0.004702194357366771, 0.004702194357366771, 0.004702194357366771, 0.9404388714733543, 0.7931034482758621, 0.438871473354232, 0.3495297805642633, 0.30094043887147337, 0.25235109717868337, 0.22727272727272727, 0.14420062695924765, 0.03918495297805643, 0.02821316614420063, 0.029780564263322883, 0.05956112852664577, 0.8150470219435737, 0.09717868338557993, 0.09561128526645768, 0.032915360501567396, 0.029780564263322883, 0.034482758620689655, 0.03605015673981191, 0.04231974921630094, 0.7445141065830722, 0.7445141065830722, 0.7492163009404389, 0.8166144200626959, 0.8197492163009404, 0.8385579937304075, 0.841692789968652, 0.8557993730407524, 0.8495297805642633, 0.841692789968652, 0.8260188087774295, 0.8166144200626959, 0.7507836990595611, 0.7445141065830722, 0.7445141065830722, 0.7429467084639498, 0.0438871473354232, 0.05642633228840126, 0.07210031347962383, 0.10658307210031348, 0.1614420062695925, 0.2507836990595611, 0.3824451410658307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AlbA_2.gap.json b/pfam_gap_rates/AlbA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..59ef3059ce7c360d0fb75ab40e9a5b7b7b3104cf
--- /dev/null
+++ b/pfam_gap_rates/AlbA_2.gap.json
@@ -0,0 +1 @@
+{"family": "AlbA_2", "n_seqs": 1585, "length": 169, "gap_rates": [0.18801261829652996, 0.15520504731861198, 0.1280757097791798, 0.1028391167192429, 0.09337539432176656, 0.0832807570977918, 0.08075709779179811, 0.07886435331230283, 0.07886435331230283, 0.07697160883280757, 0.07697160883280757, 0.07444794952681388, 0.07634069400630915, 0.07129337539432176, 0.18801261829652996, 0.17981072555205047, 0.4801261829652997, 0.6548895899053627, 0.7255520504731862, 0.7078864353312303, 0.6681388012618297, 0.8649842271293375, 0.8996845425867508, 0.9217665615141956, 0.9085173501577287, 0.8788643533123028, 0.7873817034700316, 0.04290220820189274, 0.027129337539432176, 0.008832807570977918, 0.006309148264984227, 0.0056782334384858045, 0.0056782334384858045, 0.005047318611987382, 0.0037854889589905363, 0.0037854889589905363, 0.0037854889589905363, 0.0037854889589905363, 0.8794952681388013, 0.9167192429022082, 0.8845425867507887, 0.8473186119873817, 0.0056782334384858045, 0.0018927444794952682, 0.8977917981072555, 0.0012618296529968455, 0.0012618296529968455, 0.0012618296529968455, 0.0006309148264984228, 0.0, 0.0, 0.0006309148264984228, 0.0012618296529968455, 0.0031545741324921135, 0.8788643533123028, 0.943217665615142, 0.6397476340694006, 0.008201892744479496, 0.014511041009463722, 0.004416403785488959, 0.8700315457413249, 0.9249211356466877, 0.9053627760252366, 0.853627760252366, 0.004416403785488959, 0.007570977917981073, 0.007570977917981073, 0.00946372239747634, 0.910410094637224, 0.9413249211356467, 0.8580441640378549, 0.6593059936908517, 0.5583596214511041, 0.40946372239747636, 0.1665615141955836, 0.06750788643533123, 0.04605678233438486, 0.03974763406940063, 0.029022082018927444, 0.026498422712933754, 0.026498422712933754, 0.024605678233438486, 0.03028391167192429, 0.03470031545741325, 0.03974763406940063, 0.04416403785488959, 0.24605678233438485, 0.0555205047318612, 0.03533123028391167, 0.03596214511041009, 0.03596214511041009, 0.03722397476340694, 0.04037854889589906, 0.049842271293375394, 0.0473186119873817, 0.8365930599369085, 0.9148264984227129, 0.943217665615142, 0.9318611987381703, 0.9009463722397476, 0.8132492113564669, 0.050473186119873815, 0.05741324921135647, 0.04921135646687697, 0.9438485804416403, 0.05110410094637224, 0.0473186119873817, 0.049842271293375394, 0.05110410094637224, 0.09211356466876972, 0.08769716088328075, 0.05993690851735016, 0.05993690851735016, 0.056782334384858045, 0.051735015772870666, 0.8340694006309148, 0.8668769716088328, 0.9274447949526814, 0.938801261829653, 0.9457413249211356, 0.9356466876971609, 0.886435331230284, 0.8511041009463722, 0.7854889589905363, 0.049842271293375394, 0.051735015772870666, 0.05299684542586751, 0.05236593059936909, 0.051735015772870666, 0.05362776025236593, 0.05615141955835962, 0.05804416403785489, 0.05804416403785489, 0.06056782334384858, 0.06687697160883281, 0.07066246056782334, 0.0750788643533123, 0.07886435331230283, 0.7293375394321766, 0.9078864353312303, 0.9362776025236593, 0.9236593059936908, 0.8479495268138801, 0.6839116719242903, 0.5041009463722398, 0.41198738170347005, 0.2220820189274448, 0.14195583596214512, 0.14952681388012617, 0.1085173501577287, 0.7375394321766562, 0.8870662460567823, 0.9438485804416403, 0.8006309148264984, 0.7167192429022082, 0.11167192429022083, 0.11293375394321767, 0.11482649842271293, 0.11482649842271293, 0.1167192429022082, 0.11735015772870662, 0.12492113564668769, 0.13564668769716087, 0.14006309148264984, 0.16277602523659307, 0.19873817034700317, 0.2832807570977918, 0.39936908517350156, 0.555205047318612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Aldolase.gap.json b/pfam_gap_rates/Aldolase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d77572092c683e2f3770eb8294d36cbd2f7e3b4
--- /dev/null
+++ b/pfam_gap_rates/Aldolase.gap.json
@@ -0,0 +1 @@
+{"family": "Aldolase", "n_seqs": 1533, "length": 200, "gap_rates": [0.9321591650358774, 0.8401826484018264, 0.6216568819308546, 0.43052837573385516, 0.30528375733855184, 0.25505544683626874, 0.18003913894324852, 0.136986301369863, 0.08741030658838878, 0.0684931506849315, 0.06327462491846053, 0.060665362035225046, 0.05805609915198956, 0.05675146771037182, 0.055446836268754074, 0.055446836268754074, 0.05414220482713633, 0.05348988910632746, 0.05283757338551859, 0.051532941943900845, 0.04892367906066536, 0.046314416177429873, 0.042400521852576645, 0.03979125896934116, 0.038486627527723416, 0.037834311806914545, 0.03587736464448793, 0.03522504892367906, 0.033920417482061316, 0.033920417482061316, 0.033268101761252444, 0.033268101761252444, 0.033268101761252444, 0.033268101761252444, 0.03131115459882583, 0.03065883887801696, 0.028701891715590344, 0.028701891715590344, 0.028701891715590344, 0.028701891715590344, 0.028049575994781473, 0.02674494455316373, 0.02674494455316373, 0.02674494455316373, 0.02609262883235486, 0.02674494455316373, 0.0273972602739726, 0.02674494455316373, 0.02674494455316373, 0.02609262883235486, 0.0273972602739726, 0.1441617742987606, 0.03587736464448793, 0.028701891715590344, 0.0273972602739726, 0.02609262883235486, 0.9425962165688193, 0.02609262883235486, 0.903457273320287, 0.024135681669928244, 0.9452054794520548, 0.024135681669928244, 0.9099804305283757, 0.024135681669928244, 0.024787997390737115, 0.024135681669928244, 0.02217873450750163, 0.021526418786692758, 0.02217873450750163, 0.02217873450750163, 0.02217873450750163, 0.02217873450750163, 0.02217873450750163, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.023483365949119372, 0.023483365949119372, 0.023483365949119372, 0.023483365949119372, 0.02217873450750163, 0.02217873450750163, 0.021526418786692758, 0.021526418786692758, 0.021526418786692758, 0.021526418786692758, 0.021526418786692758, 0.020221787345075015, 0.020221787345075015, 0.018917155903457272, 0.020221787345075015, 0.020874103065883887, 0.021526418786692758, 0.021526418786692758, 0.0228310502283105, 0.0228310502283105, 0.023483365949119372, 0.0228310502283105, 0.024787997390737115, 0.024787997390737115, 0.0228310502283105, 0.0228310502283105, 0.023483365949119372, 0.021526418786692758, 0.020221787345075015, 0.020221787345075015, 0.019569471624266144, 0.019569471624266144, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.01761252446183953, 0.01761252446183953, 0.018917155903457272, 0.018917155903457272, 0.01761252446183953, 0.016960208741030658, 0.016960208741030658, 0.01761252446183953, 0.016960208741030658, 0.015655577299412915, 0.015655577299412915, 0.015655577299412915, 0.015655577299412915, 0.014350945857795172, 0.015003261578604044, 0.014350945857795172, 0.014350945857795172, 0.0136986301369863, 0.0136986301369863, 0.014350945857795172, 0.014350945857795172, 0.0136986301369863, 0.019569471624266144, 0.015003261578604044, 0.025440313111545987, 0.0365296803652968, 0.02217873450750163, 0.41226353555120676, 0.020874103065883887, 0.021526418786692758, 0.016307893020221786, 0.015655577299412915, 0.015655577299412915, 0.016307893020221786, 0.016307893020221786, 0.016307893020221786, 0.016307893020221786, 0.02674494455316373, 0.03587736464448793, 0.030006523157208087, 0.03131115459882583, 0.021526418786692758, 0.021526418786692758, 0.0228310502283105, 0.020221787345075015, 0.0182648401826484, 0.018917155903457272, 0.018917155903457272, 0.016960208741030658, 0.016960208741030658, 0.01761252446183953, 0.01761252446183953, 0.01761252446183953, 0.018917155903457272, 0.020221787345075015, 0.020221787345075015, 0.020874103065883887, 0.020874103065883887, 0.024135681669928244, 0.021526418786692758, 0.02217873450750163, 0.02217873450750163, 0.024135681669928244, 0.02674494455316373, 0.028701891715590344, 0.03065883887801696, 0.03261578604044357, 0.03457273320287019, 0.03913894324853229, 0.03979125896934116, 0.043052837573385516, 0.04827136333985649, 0.06588388780169602, 0.10763209393346379, 0.14546640574037834, 0.17742987606001304, 0.36007827788649704, 0.33268101761252444, 0.2694063926940639, 0.2609262883235486, 0.26418786692759294, 0.27071102413568165, 0.28180039138943247, 0.2876712328767123, 0.3020221787345075, 0.31833007175472927, 0.3594259621656882, 0.5296803652968036, 0.7834311806914547], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alpha-amylase_N.gap.json b/pfam_gap_rates/Alpha-amylase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e1069162ef79126d55bca6fd209aea1988ff1fd
--- /dev/null
+++ b/pfam_gap_rates/Alpha-amylase_N.gap.json
@@ -0,0 +1 @@
+{"family": "Alpha-amylase_N", "n_seqs": 350, "length": 131, "gap_rates": [0.32857142857142857, 0.32571428571428573, 0.3, 0.2857142857142857, 0.26857142857142857, 0.24, 0.22857142857142856, 0.22, 0.2257142857142857, 0.22, 0.21428571428571427, 0.21714285714285714, 0.21714285714285714, 0.21142857142857144, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.2257142857142857, 0.1742857142857143, 0.10571428571428572, 0.06, 0.04, 0.025714285714285714, 0.025714285714285714, 0.025714285714285714, 0.02, 0.017142857142857144, 0.017142857142857144, 0.014285714285714285, 0.017142857142857144, 0.08571428571428572, 0.02857142857142857, 0.02, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.011428571428571429, 0.022857142857142857, 0.022857142857142857, 0.02, 0.022857142857142857, 0.045714285714285714, 0.12571428571428572, 0.14285714285714285, 0.7685714285714286, 0.7885714285714286, 0.88, 0.9457142857142857, 0.7942857142857143, 0.7714285714285715, 0.5914285714285714, 0.52, 0.5057142857142857, 0.34285714285714286, 0.30857142857142855, 0.2857142857142857, 0.26285714285714284, 0.2257142857142857, 0.19428571428571428, 0.1, 0.06285714285714286, 0.008571428571428572, 0.008571428571428572, 0.005714285714285714, 0.005714285714285714, 0.002857142857142857, 0.005714285714285714, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.008571428571428572, 0.002857142857142857, 0.002857142857142857, 0.0, 0.002857142857142857, 0.002857142857142857, 0.0, 0.002857142857142857, 0.005714285714285714, 0.002857142857142857, 0.014285714285714285, 0.002857142857142857, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.017142857142857144, 0.6942857142857143, 0.011428571428571429, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.008571428571428572, 0.008571428571428572, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.8257142857142857, 0.9428571428571428, 0.7771428571428571, 0.045714285714285714, 0.07142857142857142, 0.07714285714285714, 0.08, 0.12, 0.1457142857142857, 0.19428571428571428, 0.23714285714285716, 0.5885714285714285, 0.38, 0.36, 0.30857142857142855, 0.3171428571428571, 0.32571428571428573, 0.3457142857142857, 0.3514285714285714, 0.38285714285714284, 0.4114285714285714, 0.44, 0.5628571428571428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ank_4.gap.json b/pfam_gap_rates/Ank_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee0f17256276faa84f5dcc0e069949d2b98be039
--- /dev/null
+++ b/pfam_gap_rates/Ank_4.gap.json
@@ -0,0 +1 @@
+{"family": "Ank_4", "n_seqs": 5000, "length": 56, "gap_rates": [0.8908, 0.5642, 0.2994, 0.2154, 0.1666, 0.1528, 0.1366, 0.1216, 0.1128, 0.1076, 0.0896, 0.0704, 0.0616, 0.0498, 0.036, 0.0234, 0.018, 0.0158, 0.0138, 0.0116, 0.0112, 0.0172, 0.02, 0.9044, 0.0224, 0.0196, 0.0172, 0.0192, 0.0136, 0.0094, 0.0206, 0.868, 0.0286, 0.0158, 0.0282, 0.0086, 0.0074, 0.0052, 0.0034, 0.004, 0.0068, 0.0102, 0.0134, 0.022, 0.0418, 0.0634, 0.076, 0.0962, 0.1192, 0.1358, 0.1484, 0.159, 0.1802, 0.2082, 0.2316, 0.354], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Apocytochr_F_N.gap.json b/pfam_gap_rates/Apocytochr_F_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06a3b3eb93225636d30ea03e2776b4bcba0952ba
--- /dev/null
+++ b/pfam_gap_rates/Apocytochr_F_N.gap.json
@@ -0,0 +1 @@
+{"family": "Apocytochr_F_N", "n_seqs": 144, "length": 156, "gap_rates": [0.20833333333333334, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.2013888888888889, 0.16666666666666666, 0.1527777777777778, 0.14583333333333334, 0.7638888888888888, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.13194444444444445, 0.13194444444444445, 0.125, 0.125, 0.125, 0.125, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.125, 0.125, 0.125, 0.1111111111111111, 0.1111111111111111, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.1111111111111111, 0.11805555555555555, 0.125, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.11805555555555555, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10416666666666667, 0.1111111111111111, 0.1111111111111111, 0.125, 0.125, 0.125, 0.125, 0.125, 0.13194444444444445, 0.13194444444444445, 0.13194444444444445, 0.1388888888888889, 0.1388888888888889, 0.13194444444444445, 0.13194444444444445, 0.125, 0.11805555555555555, 0.125, 0.13194444444444445, 0.125, 0.11805555555555555, 0.11805555555555555, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.1111111111111111, 0.1111111111111111, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.09722222222222222, 0.1111111111111111, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.13194444444444445, 0.13194444444444445, 0.13194444444444445, 0.13194444444444445, 0.13194444444444445, 0.13194444444444445], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ArabFuran-catal.gap.json b/pfam_gap_rates/ArabFuran-catal.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb14beb0e32b1d346e1da5da594b4cc63001a7b4
--- /dev/null
+++ b/pfam_gap_rates/ArabFuran-catal.gap.json
@@ -0,0 +1 @@
+{"family": "ArabFuran-catal", "n_seqs": 104, "length": 324, "gap_rates": [0.14423076923076922, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.08653846153846154, 0.08653846153846154, 0.08653846153846154, 0.07692307692307693, 0.0673076923076923, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.0673076923076923, 0.04807692307692308, 0.038461538461538464, 0.04807692307692308, 0.028846153846153848, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.04807692307692308, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.028846153846153848, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Arc.gap.json b/pfam_gap_rates/Arc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5253c99f91834c2a8a50dc7b819b4d56d9c8b8b
--- /dev/null
+++ b/pfam_gap_rates/Arc.gap.json
@@ -0,0 +1 @@
+{"family": "Arc", "n_seqs": 191, "length": 50, "gap_rates": [0.8848167539267016, 0.8010471204188482, 0.6963350785340314, 0.6178010471204188, 0.5549738219895288, 0.4816753926701571, 0.43455497382198954, 0.38219895287958117, 0.2879581151832461, 0.2879581151832461, 0.12041884816753927, 0.08376963350785341, 0.06282722513089005, 0.02617801047120419, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.005235602094240838, 0.010471204188481676, 0.010471204188481676, 0.015706806282722512, 0.015706806282722512, 0.05759162303664921, 0.07329842931937172, 0.07329842931937172, 0.07329842931937172, 0.09947643979057591, 0.13612565445026178, 0.17801047120418848, 0.225130890052356, 0.32460732984293195, 0.45549738219895286, 0.518324607329843, 0.5968586387434555, 0.6387434554973822, 0.680628272251309, 0.8481675392670157, 0.9476439790575916], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arf.gap.json b/pfam_gap_rates/Arf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b6768dcc9687e44e7788622fe6ab599622aff03
--- /dev/null
+++ b/pfam_gap_rates/Arf.gap.json
@@ -0,0 +1 @@
+{"family": "Arf", "n_seqs": 4625, "length": 197, "gap_rates": [0.908972972972973, 0.6912432432432433, 0.580972972972973, 0.5314594594594595, 0.4797837837837838, 0.44994594594594595, 0.41427027027027025, 0.38313513513513514, 0.3494054054054054, 0.31632432432432434, 0.6205405405405405, 0.24432432432432433, 0.22767567567567568, 0.20605405405405405, 0.1850810810810811, 0.1757837837837838, 0.1654054054054054, 0.16086486486486487, 0.15027027027027026, 0.14724324324324325, 0.14486486486486486, 0.14356756756756756, 0.14421621621621622, 0.144, 0.14313513513513512, 0.14291891891891892, 0.14291891891891892, 0.14270270270270272, 0.14205405405405405, 0.14097297297297298, 0.14032432432432432, 0.14010810810810811, 0.13708108108108108, 0.13578378378378378, 0.136, 0.1347027027027027, 0.13102702702702704, 0.13297297297297297, 0.13016216216216217, 0.12605405405405407, 0.12281081081081081, 0.8955675675675676, 0.92, 0.9321081081081081, 0.9381621621621622, 0.9282162162162162, 0.9126486486486487, 0.8237837837837838, 0.11913513513513513, 0.11783783783783784, 0.11718918918918919, 0.11416216216216216, 0.11156756756756757, 0.10918918918918918, 0.10854054054054053, 0.10724324324324325, 0.10724324324324325, 0.10616216216216216, 0.10291891891891893, 0.10227027027027027, 0.10097297297297297, 0.10032432432432432, 0.9321081081081081, 0.09621621621621622, 0.09275675675675675, 0.09016216216216216, 0.08864864864864865, 0.08713513513513514, 0.08518918918918919, 0.0841081081081081, 0.08389189189189189, 0.0841081081081081, 0.08432432432432432, 0.08540540540540541, 0.08605405405405406, 0.08627027027027027, 0.09643243243243244, 0.0947027027027027, 0.08627027027027027, 0.08518918918918919, 0.08108108108108109, 0.08086486486486487, 0.08108108108108109, 0.07848648648648648, 0.07718918918918918, 0.07718918918918918, 0.0758918918918919, 0.0745945945945946, 0.07308108108108108, 0.07243243243243243, 0.07178378378378378, 0.07135135135135136, 0.07264864864864864, 0.07416216216216216, 0.07481081081081081, 0.07394594594594595, 0.07481081081081081, 0.07697297297297297, 0.07632432432432433, 0.07632432432432433, 0.08454054054054054, 0.08237837837837837, 0.08389189189189189, 0.0812972972972973, 0.08043243243243244, 0.07978378378378378, 0.08043243243243244, 0.07978378378378378, 0.08108108108108109, 0.08172972972972974, 0.0812972972972973, 0.08, 0.08043243243243244, 0.08151351351351352, 0.0787027027027027, 0.07956756756756757, 0.08043243243243244, 0.08389189189189189, 0.08562162162162162, 0.08562162162162162, 0.08821621621621621, 0.0841081081081081, 0.9481081081081081, 0.08021621621621622, 0.0812972972972973, 0.07956756756756757, 0.07848648648648648, 0.07848648648648648, 0.07935135135135135, 0.07913513513513513, 0.07891891891891892, 0.07913513513513513, 0.08021621621621622, 0.08108108108108109, 0.08367567567567567, 0.08627027027027027, 0.08648648648648649, 0.09124324324324325, 0.09275675675675675, 0.09102702702702703, 0.09254054054054055, 0.09513513513513513, 0.09427027027027027, 0.09664864864864865, 0.09708108108108109, 0.10010810810810811, 0.10118918918918919, 0.10486486486486486, 0.10551351351351351, 0.10918918918918918, 0.11740540540540541, 0.11718918918918919, 0.12064864864864865, 0.9113513513513514, 0.9182702702702703, 0.9251891891891892, 0.9437837837837838, 0.9297297297297298, 0.9219459459459459, 0.9167567567567567, 0.894054054054054, 0.128, 0.13643243243243244, 0.8789189189189189, 0.9245405405405406, 0.9437837837837838, 0.9154594594594595, 0.8562162162162162, 0.7005405405405405, 0.16994594594594595, 0.1450810810810811, 0.1450810810810811, 0.14486486486486486, 0.1476756756756757, 0.14270270270270272, 0.144, 0.14464864864864865, 0.1465945945945946, 0.14854054054054053, 0.14983783783783783, 0.15394594594594593, 0.15632432432432433, 0.1625945945945946, 0.1654054054054054, 0.1682162162162162, 0.17491891891891892, 0.18075675675675676, 0.18594594594594593, 0.18854054054054054, 0.1907027027027027, 0.1948108108108108, 0.19848648648648648, 0.20454054054054055, 0.21535135135135136, 0.2652972972972973, 0.44172972972972974, 0.7926486486486487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arg_repressor_C.gap.json b/pfam_gap_rates/Arg_repressor_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4519ad1e659710accc38264350227249932c292a
--- /dev/null
+++ b/pfam_gap_rates/Arg_repressor_C.gap.json
@@ -0,0 +1 @@
+{"family": "Arg_repressor_C", "n_seqs": 884, "length": 68, "gap_rates": [0.5735294117647058, 0.26018099547511314, 0.10520361990950226, 0.053167420814479636, 0.03167420814479638, 0.027149321266968326, 0.02262443438914027, 0.016968325791855202, 0.016968325791855202, 0.014705882352941176, 0.014705882352941176, 0.010180995475113122, 0.004524886877828055, 0.003393665158371041, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.003393665158371041, 0.003393665158371041, 0.9219457013574661, 0.0011312217194570137, 0.0011312217194570137, 0.0011312217194570137, 0.0011312217194570137, 0.0011312217194570137, 0.0011312217194570137, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.0022624434389140274, 0.003393665158371041, 0.003393665158371041, 0.003393665158371041, 0.003393665158371041, 0.003393665158371041, 0.003393665158371041, 0.004524886877828055, 0.005656108597285068, 0.005656108597285068, 0.010180995475113122, 0.00904977375565611, 0.012443438914027148, 0.019230769230769232, 0.024886877828054297, 0.02828054298642534, 0.038461538461538464, 0.053167420814479636, 0.07352941176470588, 0.10633484162895927, 0.5169683257918553], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arginase.gap.json b/pfam_gap_rates/Arginase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dd0d3e83c4680ead280ddd74f22ba9ba3931c5f
--- /dev/null
+++ b/pfam_gap_rates/Arginase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ArgoL2.gap.json b/pfam_gap_rates/ArgoL2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6400ebf5cb042433a5da880731d5df2e556b7b37
--- /dev/null
+++ b/pfam_gap_rates/ArgoL2.gap.json
@@ -0,0 +1 @@
+{"family": "ArgoL2", "n_seqs": 947, "length": 50, "gap_rates": [0.4033790918690602, 0.15311510031678988, 0.11932418162618796, 0.10242872228088701, 0.08553326293558607, 0.06969376979936642, 0.06546990496304118, 0.050686378035902854, 0.8204857444561774, 0.04751847940865892, 0.03695881731784583, 0.0337909186906019, 0.03273495248152059, 0.03167898627243928, 0.03907074973600845, 0.0337909186906019, 0.9186906019007391, 0.042238648363252376, 0.04751847940865892, 0.9165786694825766, 0.01795142555438226, 0.01689545934530095, 0.011615628299894404, 0.0031678986272439284, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0010559662090813093, 0.0, 0.0, 0.0010559662090813093, 0.0010559662090813093, 0.0010559662090813093, 0.0010559662090813093, 0.0010559662090813093, 0.0010559662090813093, 0.0010559662090813093, 0.0031678986272439284, 0.0031678986272439284, 0.004223864836325237, 0.006335797254487857, 0.007391763463569166, 0.013727560718057022, 0.054910242872228086, 0.22914466737064415], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Armet.gap.json b/pfam_gap_rates/Armet.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cfba83d845158faa7e7724031e5ffed4cf173ea1
--- /dev/null
+++ b/pfam_gap_rates/Armet.gap.json
@@ -0,0 +1 @@
+{"family": "Armet", "n_seqs": 152, "length": 146, "gap_rates": [0.5526315789473685, 0.48026315789473684, 0.42105263157894735, 0.35526315789473684, 0.34868421052631576, 0.34868421052631576, 0.34868421052631576, 0.34868421052631576, 0.34868421052631576, 0.34210526315789475, 0.3355263157894737, 0.3355263157894737, 0.3355263157894737, 0.3355263157894737, 0.3223684210526316, 0.3157894736842105, 0.3092105263157895, 0.3092105263157895, 0.2894736842105263, 0.2894736842105263, 0.3026315789473684, 0.3026315789473684, 0.7236842105263158, 0.3157894736842105, 0.3026315789473684, 0.3026315789473684, 0.29605263157894735, 0.29605263157894735, 0.3026315789473684, 0.29605263157894735, 0.29605263157894735, 0.2894736842105263, 0.2894736842105263, 0.2894736842105263, 0.2894736842105263, 0.2894736842105263, 0.2894736842105263, 0.26973684210526316, 0.26973684210526316, 0.26973684210526316, 0.26973684210526316, 0.9473684210526315, 0.26973684210526316, 0.26973684210526316, 0.27631578947368424, 0.27631578947368424, 0.27631578947368424, 0.26973684210526316, 0.26973684210526316, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.26973684210526316, 0.3026315789473684, 0.3157894736842105, 0.3355263157894737, 0.3355263157894737, 0.3355263157894737, 0.3355263157894737, 0.3355263157894737, 0.3026315789473684, 0.29605263157894735, 0.26973684210526316, 0.26973684210526316, 0.26973684210526316, 0.26973684210526316, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.26973684210526316, 0.26973684210526316, 0.2631578947368421, 0.2565789473684211, 0.2565789473684211, 0.2565789473684211, 0.2565789473684211, 0.26973684210526316, 0.26973684210526316, 0.26973684210526316, 0.26973684210526316, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.28289473684210525, 0.26973684210526316, 0.26973684210526316, 0.26973684210526316, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.26973684210526316, 0.25, 0.25, 0.26973684210526316, 0.2236842105263158, 0.23684210526315788, 0.21710526315789475, 0.19078947368421054, 0.1513157894736842, 0.14473684210526316, 0.125, 0.05921052631578947, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.03289473684210526, 0.02631578947368421, 0.02631578947368421, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.05263157894736842, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.07236842105263158, 0.08552631578947369, 0.11842105263157894, 0.125, 0.13815789473684212, 0.20394736842105263, 0.28289473684210525, 0.3355263157894737, 0.40131578947368424, 0.42105263157894735, 0.5263157894736842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arv1.gap.json b/pfam_gap_rates/Arv1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b32d3c0fc01c5188357b09914908072e17b3a9f
--- /dev/null
+++ b/pfam_gap_rates/Arv1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Asp_protease_2.gap.json b/pfam_gap_rates/Asp_protease_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e45b0e00641283e61e4266d37795d5bac405e018
--- /dev/null
+++ b/pfam_gap_rates/Asp_protease_2.gap.json
@@ -0,0 +1 @@
+{"family": "Asp_protease_2", "n_seqs": 1656, "length": 109, "gap_rates": [0.7198067632850241, 0.4969806763285024, 0.37922705314009664, 0.3351449275362319, 0.2826086956521739, 0.24154589371980675, 0.21557971014492755, 0.9432367149758454, 0.9347826086956522, 0.17814009661835747, 0.8514492753623188, 0.09601449275362318, 0.059178743961352656, 0.9160628019323671, 0.024758454106280192, 0.00966183574879227, 0.0012077294685990338, 0.0012077294685990338, 0.0012077294685990338, 0.0012077294685990338, 0.0018115942028985507, 0.0012077294685990338, 0.0012077294685990338, 0.017512077294685992, 0.0006038647342995169, 0.0006038647342995169, 0.0006038647342995169, 0.0012077294685990338, 0.0012077294685990338, 0.0012077294685990338, 0.0006038647342995169, 0.0006038647342995169, 0.0036231884057971015, 0.0030193236714975845, 0.0006038647342995169, 0.0006038647342995169, 0.0012077294685990338, 0.0012077294685990338, 0.0030193236714975845, 0.006038647342995169, 0.00785024154589372, 0.028381642512077296, 0.2632850241545894, 0.4607487922705314, 0.24456521739130435, 0.028985507246376812, 0.01932367149758454, 0.01932367149758454, 0.01932367149758454, 0.021739130434782608, 0.030193236714975844, 0.024758454106280192, 0.030797101449275364, 0.030193236714975844, 0.7397342995169082, 0.035628019323671496, 0.04106280193236715, 0.04770531400966183, 0.06038647342995169, 0.06521739130434782, 0.07246376811594203, 0.0785024154589372, 0.08393719806763285, 0.10507246376811594, 0.9365942028985508, 0.7952898550724637, 0.10990338164251208, 0.9227053140096618, 0.9178743961352657, 0.1111111111111111, 0.11352657004830918, 0.12258454106280194, 0.1388888888888889, 0.14190821256038647, 0.9414251207729468, 0.2222222222222222, 0.16183574879227053, 0.16666666666666666, 0.3393719806763285, 0.22644927536231885, 0.2179951690821256, 0.1926328502415459, 0.19384057971014493, 0.19867149758454106, 0.19927536231884058, 0.20229468599033817, 0.20772946859903382, 0.717391304347826, 0.782608695652174, 0.822463768115942, 0.8864734299516909, 0.9323671497584541, 0.8472222222222222, 0.8085748792270532, 0.7548309178743962, 0.6751207729468599, 0.4414251207729469, 0.34541062801932365, 0.31823671497584544, 0.2614734299516908, 0.26268115942028986, 0.26509661835748793, 0.267512077294686, 0.26811594202898553, 0.2741545893719807, 0.2807971014492754, 0.3303140096618358, 0.3894927536231884, 0.6183574879227053], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AstA.gap.json b/pfam_gap_rates/AstA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b7d3a95d32c820f5fe7f80dc4ac4e47d9f67843
--- /dev/null
+++ b/pfam_gap_rates/AstA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Auxin_canalis.gap.json b/pfam_gap_rates/Auxin_canalis.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75b49cc9b8e7edf052f055bd0d02ca2d42a3a709
--- /dev/null
+++ b/pfam_gap_rates/Auxin_canalis.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ax_dynein_light.gap.json b/pfam_gap_rates/Ax_dynein_light.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2612afbf69329e5f5849ba18df24a1a00b47d0be
--- /dev/null
+++ b/pfam_gap_rates/Ax_dynein_light.gap.json
@@ -0,0 +1 @@
+{"family": "Ax_dynein_light", "n_seqs": 265, "length": 203, "gap_rates": [0.5584905660377358, 0.3471698113207547, 0.2981132075471698, 0.28679245283018867, 0.28679245283018867, 0.2830188679245283, 0.2830188679245283, 0.2830188679245283, 0.2830188679245283, 0.2792452830188679, 0.2792452830188679, 0.27547169811320754, 0.2641509433962264, 0.2490566037735849, 0.9018867924528302, 0.2339622641509434, 0.23018867924528302, 0.2188679245283019, 0.21509433962264152, 0.20754716981132076, 0.20754716981132076, 0.2037735849056604, 0.22641509433962265, 0.16226415094339622, 0.15471698113207547, 0.13584905660377358, 0.12830188679245283, 0.12075471698113208, 0.11320754716981132, 0.10566037735849057, 0.10566037735849057, 0.10566037735849057, 0.1018867924528302, 0.09811320754716982, 0.09811320754716982, 0.10566037735849057, 0.09811320754716982, 0.1018867924528302, 0.1018867924528302, 0.1018867924528302, 0.1018867924528302, 0.1018867924528302, 0.09811320754716982, 0.09811320754716982, 0.09811320754716982, 0.09433962264150944, 0.09433962264150944, 0.9358490566037736, 0.9358490566037736, 0.9320754716981132, 0.09056603773584905, 0.09811320754716982, 0.09811320754716982, 0.09433962264150944, 0.10943396226415095, 0.1018867924528302, 0.09811320754716982, 0.09811320754716982, 0.09433962264150944, 0.10943396226415095, 0.09056603773584905, 0.09056603773584905, 0.07547169811320754, 0.07169811320754717, 0.8641509433962264, 0.879245283018868, 0.8905660377358491, 0.8905660377358491, 0.9358490566037736, 0.9471698113207547, 0.9358490566037736, 0.8905660377358491, 0.8905660377358491, 0.8830188679245283, 0.8716981132075472, 0.8641509433962264, 0.06792452830188679, 0.06415094339622641, 0.06037735849056604, 0.06415094339622641, 0.06037735849056604, 0.05660377358490566, 0.045283018867924525, 0.045283018867924525, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.03773584905660377, 0.03773584905660377, 0.04905660377358491, 0.04905660377358491, 0.045283018867924525, 0.033962264150943396, 0.033962264150943396, 0.03773584905660377, 0.04150943396226415, 0.045283018867924525, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.045283018867924525, 0.04150943396226415, 0.045283018867924525, 0.06415094339622641, 0.05660377358490566, 0.05660377358490566, 0.12075471698113208, 0.1169811320754717, 0.10943396226415095, 0.08679245283018867, 0.06792452830188679, 0.06037735849056604, 0.06037735849056604, 0.05660377358490566, 0.06037735849056604, 0.06415094339622641, 0.06415094339622641, 0.939622641509434, 0.07169811320754717, 0.0830188679245283, 0.06037735849056604, 0.06415094339622641, 0.06415094339622641, 0.06792452830188679, 0.06792452830188679, 0.06792452830188679, 0.06792452830188679, 0.10943396226415095, 0.10943396226415095, 0.09811320754716982, 0.07924528301886792, 0.07547169811320754, 0.07169811320754717, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07924528301886792, 0.07924528301886792, 0.07924528301886792, 0.07924528301886792, 0.07924528301886792, 0.07924528301886792, 0.0830188679245283, 0.0830188679245283, 0.0830188679245283, 0.0830188679245283, 0.0830188679245283, 0.0830188679245283, 0.0830188679245283, 0.0830188679245283, 0.0830188679245283, 0.08679245283018867, 0.08679245283018867, 0.09056603773584905, 0.09433962264150944, 0.09811320754716982, 0.10566037735849057, 0.10566037735849057, 0.10943396226415095, 0.1169811320754717, 0.1169811320754717, 0.13584905660377358, 0.14339622641509434, 0.1509433962264151, 0.1471698113207547, 0.16226415094339622, 0.1811320754716981, 0.18490566037735848, 0.18867924528301888, 0.19245283018867926, 0.19245283018867926, 0.19245283018867926, 0.19622641509433963, 0.2037735849056604, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.21132075471698114, 0.21132075471698114, 0.23018867924528302, 0.23018867924528302, 0.23773584905660378, 0.2981132075471698, 0.32075471698113206, 0.3433962264150943, 0.3622641509433962], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/B12D.gap.json b/pfam_gap_rates/B12D.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ebe9a8ba1bf4d0539892348e0b2b1664010ab3d3
--- /dev/null
+++ b/pfam_gap_rates/B12D.gap.json
@@ -0,0 +1 @@
+{"family": "B12D", "n_seqs": 367, "length": 71, "gap_rates": [0.7384196185286104, 0.34332425068119893, 0.2452316076294278, 0.1008174386920981, 0.07629427792915532, 0.05994550408719346, 0.05994550408719346, 0.05994550408719346, 0.043596730245231606, 0.03814713896457766, 0.03814713896457766, 0.0326975476839237, 0.02997275204359673, 0.02997275204359673, 0.027247956403269755, 0.027247956403269755, 0.02452316076294278, 0.021798365122615803, 0.021798365122615803, 0.021798365122615803, 0.01634877384196185, 0.01634877384196185, 0.013623978201634877, 0.013623978201634877, 0.013623978201634877, 0.013623978201634877, 0.013623978201634877, 0.23160762942779292, 0.01634877384196185, 0.01634877384196185, 0.01907356948228883, 0.01907356948228883, 0.027247956403269755, 0.01907356948228883, 0.02452316076294278, 0.02452316076294278, 0.02997275204359673, 0.05449591280653951, 0.0653950953678474, 0.03814713896457766, 0.04904632152588556, 0.06267029972752043, 0.4877384196185286, 0.49318801089918257, 0.1307901907356948, 0.1335149863760218, 0.1335149863760218, 0.1307901907356948, 0.23433242506811988, 0.15258855585831063, 0.15258855585831063, 0.16621253405994552, 0.16348773841961853, 0.16348773841961853, 0.17166212534059946, 0.1907356948228883, 0.19618528610354224, 0.2098092643051771, 0.23705722070844687, 0.6784741144414169, 0.6648501362397821, 0.23160762942779292, 0.2561307901907357, 0.2670299727520436, 0.33787465940054495, 0.36239782016348776, 0.4114441416893733, 0.44959128065395093, 0.48501362397820164, 0.5722070844686649, 0.771117166212534], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/B2-adapt-app_C.gap.json b/pfam_gap_rates/B2-adapt-app_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bad575f32f010909c9aa3c38d2e64cec2610a98
--- /dev/null
+++ b/pfam_gap_rates/B2-adapt-app_C.gap.json
@@ -0,0 +1 @@
+{"family": "B2-adapt-app_C", "n_seqs": 342, "length": 123, "gap_rates": [0.7222222222222222, 0.3567251461988304, 0.23391812865497075, 0.14619883040935672, 0.09064327485380116, 0.05555555555555555, 0.05555555555555555, 0.049707602339181284, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.04678362573099415, 0.04678362573099415, 0.05263157894736842, 0.04678362573099415, 0.04093567251461988, 0.038011695906432746, 0.038011695906432746, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.038011695906432746, 0.5526315789473685, 0.5847953216374269, 0.8596491228070176, 0.27485380116959063, 0.2543859649122807, 0.564327485380117, 0.21929824561403508, 0.03508771929824561, 0.03508771929824561, 0.03216374269005848, 0.02631578947368421, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.023391812865497075, 0.023391812865497075, 0.2631578947368421, 0.023391812865497075, 0.06140350877192982, 0.05263157894736842, 0.9473684210526315, 0.04678362573099415, 0.049707602339181284, 0.5614035087719298, 0.02631578947368421, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02046783625730994, 0.9298245614035088, 0.03508771929824561, 0.038011695906432746, 0.06432748538011696, 0.03216374269005848, 0.029239766081871343, 0.9210526315789473, 0.9473684210526315, 0.8245614035087719, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.4473684210526316, 0.04093567251461988, 0.05555555555555555, 0.652046783625731, 0.06725146198830409, 0.5701754385964912, 0.4649122807017544, 0.05555555555555555, 0.05555555555555555, 0.06140350877192982, 0.07017543859649122, 0.07602339181286549, 0.07894736842105263, 0.0935672514619883, 0.10818713450292397, 0.8976608187134503, 0.8830409356725146, 0.10526315789473684, 0.1111111111111111, 0.11403508771929824, 0.11695906432748537, 0.11988304093567251, 0.13450292397660818, 0.13157894736842105, 0.13742690058479531, 0.14619883040935672, 0.14619883040935672, 0.1608187134502924, 0.16666666666666666, 0.2046783625730994, 0.23976608187134502, 0.2719298245614035, 0.3654970760233918], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/B3_4.gap.json b/pfam_gap_rates/B3_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88b82d09916792a243b9ae26338e8c7bb6b363c4
--- /dev/null
+++ b/pfam_gap_rates/B3_4.gap.json
@@ -0,0 +1 @@
+{"family": "B3_4", "n_seqs": 2936, "length": 214, "gap_rates": [0.7506811989100818, 0.24352861035422343, 0.15326975476839236, 0.12023160762942779, 0.1008174386920981, 0.09332425068119891, 0.08753405994550409, 0.082425068119891, 0.08174386920980926, 0.07629427792915532, 0.07459128065395096, 0.0739100817438692, 0.08583106267029973, 0.06743869209809264, 0.5619891008174387, 0.06335149863760219, 0.05892370572207085, 0.05688010899182561, 0.05688010899182561, 0.17881471389645776, 0.17779291553133514, 0.17745231607629428, 0.17643051771117166, 0.17643051771117166, 0.17438692098092642, 0.1737057220708447, 0.17643051771117166, 0.17200272479564033, 0.1733651226158038, 0.16961852861035423, 0.16621253405994552, 0.16723433242506813, 0.16348773841961853, 0.15735694822888283, 0.8797683923705722, 0.029291553133514985, 0.02826975476839237, 0.025885558583106268, 0.025204359673024524, 0.02486376021798365, 0.02282016348773842, 0.02282016348773842, 0.022479564032697547, 0.021457765667574933, 0.020435967302452316, 0.020435967302452316, 0.020095367847411442, 0.019754768392370572, 0.0194141689373297, 0.018392370572207085, 0.018051771117166212, 0.01600817438692098, 0.8521798365122616, 0.8528610354223434, 0.8528610354223434, 0.8528610354223434, 0.8521798365122616, 0.013623978201634877, 0.012942779291553134, 0.011580381471389645, 0.011239782016348773, 0.010899182561307902, 0.010899182561307902, 0.010899182561307902, 0.010899182561307902, 0.011239782016348773, 0.011239782016348773, 0.021798365122615803, 0.9189373297002725, 0.9250681198910081, 0.9427792915531336, 0.9318801089918256, 0.9230245231607629, 0.9025885558583107, 0.013283378746594006, 0.6324931880108992, 0.015667574931880108, 0.015667574931880108, 0.0170299727520436, 0.877724795640327, 0.01634877384196185, 0.016689373297002725, 0.016689373297002725, 0.015667574931880108, 0.014645776566757493, 0.02861035422343324, 0.020095367847411442, 0.0194141689373297, 0.01430517711171662, 0.01430517711171662, 0.01430517711171662, 0.015667574931880108, 0.014986376021798364, 0.014645776566757493, 0.08276566757493188, 0.018392370572207085, 0.04904632152588556, 0.027247956403269755, 0.016689373297002725, 0.019754768392370572, 0.9158719346049047, 0.05108991825613079, 0.013283378746594006, 0.840258855585831, 0.8443460490463215, 0.8453678474114441, 0.8463896457765667, 0.8637602179836512, 0.8651226158038147, 0.8658038147138964, 0.8668256130790191, 0.8688692098092643, 0.8852179836512262, 0.8944141689373297, 0.9104223433242506, 0.9059945504087193, 0.8869209809264306, 0.8695504087193461, 0.8678474114441417, 0.8661444141689373, 0.8658038147138964, 0.8651226158038147, 0.8497956403269755, 0.8460490463215259, 0.8446866485013624, 0.8423024523160763, 0.8395776566757494, 0.008855585831062671, 0.009196185286103543, 0.008855585831062671, 0.008174386920980926, 0.007493188010899182, 0.007493188010899182, 0.00715258855585831, 0.013623978201634877, 0.0085149863760218, 0.011239782016348773, 0.018392370572207085, 0.014645776566757493, 0.7302452316076294, 0.02077656675749319, 0.025885558583106268, 0.013964577656675749, 0.010217983651226158, 0.009877384196185286, 0.009196185286103543, 0.009877384196185286, 0.009877384196185286, 0.010217983651226158, 0.01055858310626703, 0.010217983651226158, 0.009877384196185286, 0.009877384196185286, 0.009877384196185286, 0.010217983651226158, 0.01055858310626703, 0.010899182561307902, 0.010899182561307902, 0.010899182561307902, 0.011580381471389645, 0.013964577656675749, 0.021798365122615803, 0.022479564032697547, 0.02452316076294278, 0.027929155313351498, 0.031335149863760216, 0.15122615803814715, 0.15735694822888283, 0.16825613079019072, 0.2353542234332425, 0.2442098092643052, 0.25, 0.25306539509536785, 0.25919618528610355, 0.2721389645776567, 0.28133514986376024, 0.28576294277929154, 0.28848773841961856, 0.29155313351498635, 0.2970027247956403, 0.2970027247956403, 0.29836512261580383, 0.2997275204359673, 0.3000681198910082, 0.3007493188010899, 0.3021117166212534, 0.3024523160762943, 0.3034741144414169, 0.3034741144414169, 0.30381471389645776, 0.3048365122615804, 0.30449591280653954, 0.18903269754768393, 0.18767029972752045, 0.18767029972752045, 0.18767029972752045, 0.19005449591280654, 0.1893732970027248, 0.19005449591280654, 0.19141689373297002, 0.1927792915531335, 0.194141689373297, 0.19482288828337874, 0.1955040871934605, 0.19754768392370572, 0.20027247956403268, 0.20061307901907358, 0.20299727520435967, 0.20470027247956404, 0.21049046321525886, 0.22513623978201636, 0.25885558583106266, 0.36614441416893734, 0.5633514986376021], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BA14K.gap.json b/pfam_gap_rates/BA14K.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c230f86810d17a6419f445d35aaa5b16ed083dad
--- /dev/null
+++ b/pfam_gap_rates/BA14K.gap.json
@@ -0,0 +1 @@
+{"family": "BA14K", "n_seqs": 150, "length": 31, "gap_rates": [0.26666666666666666, 0.11333333333333333, 0.04, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.94, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.32], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BACK.gap.json b/pfam_gap_rates/BACK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b74754f7e6a579c9528d9c5efc2416fd56e957c6
--- /dev/null
+++ b/pfam_gap_rates/BACK.gap.json
@@ -0,0 +1 @@
+{"family": "BACK", "n_seqs": 3786, "length": 103, "gap_rates": [0.5747490755414686, 0.43396724775488643, 0.40623349181193874, 0.378499735868991, 0.3473322768092974, 0.329635499207607, 0.3166930797675647, 0.3079767564712097, 0.2913365029054411, 0.26413100898045433, 0.24352879027997887, 0.1774960380348653, 0.15134706814580032, 0.11753829899630217, 0.09957739038563128, 0.09086106708927628, 0.08505018489170629, 0.07923930269413629, 0.07210776545166403, 0.06524035921817221, 0.05810882197569995, 0.056788166930797676, 0.05467511885895404, 0.05229793977812995, 0.05071315372424723, 0.04807184363444268, 0.04675118858954041, 0.0462229265715795, 0.04384574749075541, 0.04173269941891178, 0.03909138932910724, 0.037770734284204965, 0.04226096143687269, 0.03380876914949815, 0.02641310089804543, 0.02403592181722134, 0.024300052826201797, 0.025092445853143158, 0.022451135763338615, 0.02086634970945589, 0.021130480718436345, 0.021922873745377706, 0.022979397781299524, 0.024300052826201797, 0.022979397781299524, 0.02271526677231907, 0.021394611727416798, 0.02086634970945589, 0.021658742736397254, 0.025092445853143158, 0.029054410987849975, 0.029582673005810883, 0.036978341257263604, 0.03565768621236133, 0.2485472794506075, 0.05810882197569995, 0.06973058637083994, 0.03328050713153724, 0.035393555203380875, 0.03433703116745906, 0.029054410987849975, 0.026677231907025884, 0.029054410987849975, 0.03143159006867406, 0.03248811410459588, 0.033544638140517696, 0.03328050713153724, 0.03433703116745906, 0.03486529318541997, 0.04833597464342314, 0.09693608029582673, 0.10538827258320127, 0.11410459587955626, 0.13893291072371897, 0.1561014263074485, 0.31299524564183834, 0.21473851030110935, 0.2231907025884839, 0.22873745377707344, 0.24035921817221342, 0.24432118330692024, 0.24960380348652933, 0.2519809825673534, 0.25356576862123614, 0.25805599577390387, 0.26096143687268886, 0.26465927099841524, 0.26809297411516114, 0.27179080824088747, 0.2799788695192816, 0.2834125726360275, 0.2910723718964606, 0.2913365029054411, 0.2952984680401479, 0.3048071843634443, 0.3301637612255679, 0.36106708927628106, 0.37665081880612783, 0.39540412044374007, 0.4358161648177496, 0.5747490755414686, 0.6381405176967776, 0.9286846275752774], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BAF.gap.json b/pfam_gap_rates/BAF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ef43abe6b4cf3d8a3c3c5ca567bc29422b53683
--- /dev/null
+++ b/pfam_gap_rates/BAF.gap.json
@@ -0,0 +1 @@
+{"family": "BAF", "n_seqs": 147, "length": 88, "gap_rates": [0.48299319727891155, 0.25170068027210885, 0.19047619047619047, 0.17687074829931973, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.1564625850340136, 0.14965986394557823, 0.14285714285714285, 0.1292517006802721, 0.12244897959183673, 0.12244897959183673, 0.07482993197278912, 0.06802721088435375, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.05442176870748299, 0.05442176870748299, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.034013605442176874, 0.04081632653061224, 0.04081632653061224, 0.05442176870748299, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.04081632653061224, 0.05442176870748299, 0.05442176870748299, 0.04081632653061224, 0.05442176870748299, 0.06802721088435375, 0.08163265306122448, 0.08163265306122448, 0.07482993197278912, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10884353741496598, 0.11564625850340136, 0.12244897959183673, 0.12244897959183673, 0.1292517006802721, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.17006802721088435, 0.17687074829931973, 0.17687074829931973, 0.17687074829931973, 0.17687074829931973, 0.1836734693877551, 0.19047619047619047, 0.21768707482993196, 0.2857142857142857, 0.36054421768707484], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BAH.gap.json b/pfam_gap_rates/BAH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ceb0cdb7ec45078fe2beba764254167cb9f0e03b
--- /dev/null
+++ b/pfam_gap_rates/BAH.gap.json
@@ -0,0 +1 @@
+{"family": "BAH", "n_seqs": 1701, "length": 191, "gap_rates": [0.8812463256907701, 0.599647266313933, 0.30864197530864196, 0.22810111699000588, 0.1987066431510876, 0.18636096413874192, 0.13932980599647266, 0.13345091122868902, 0.13168724279835392, 0.12933568489124045, 0.12639623750734863, 0.12404467960023516, 0.11934156378600823, 0.11875367430922987, 0.11228689006466784, 0.8589065255731922, 0.8847736625514403, 0.8930041152263375, 0.9071134626690183, 0.9124044679600235, 0.9135802469135802, 0.9182833627278072, 0.9206349206349206, 0.9412110523221634, 0.9194591416813639, 0.9182833627278072, 0.9129923574368018, 0.908289241622575, 0.9006466784244562, 0.8888888888888888, 0.8671369782480893, 0.8265726043503822, 0.4315108759553204, 0.21457965902410348, 0.09406231628453851, 0.08406819517930629, 0.078777189888301, 0.07583774250440917, 0.07289829512051735, 0.05702527924750147, 0.05055849500293945, 0.04879482657260435, 0.04879482657260435, 0.04879482657260435, 0.048206937095825984, 0.9059376837154615, 0.9265138154027043, 0.9300411522633745, 0.9400352733686067, 0.9465020576131687, 0.9465020576131687, 0.9465020576131687, 0.9429747207524986, 0.934156378600823, 0.9282774838330394, 0.9088771310993533, 0.8982951205173427, 0.04585537918871252, 0.06290417401528513, 0.059376837154614934, 0.059376837154614934, 0.059376837154614934, 0.06584362139917696, 0.06055261610817166, 0.9141681363903587, 0.927689594356261, 0.8577307466196356, 0.7695473251028807, 0.7336860670194003, 0.6014109347442681, 0.10582010582010581, 0.03292181069958848, 0.029394473838918283, 0.024691358024691357, 0.02704291593180482, 0.029394473838918283, 0.02880658436213992, 0.0205761316872428, 0.9429747207524986, 0.9441504997060552, 0.9470899470899471, 0.9494415049970606, 0.9482657260435038, 0.9453262786596119, 0.9429747207524986, 0.9417989417989417, 0.0188124632569077, 0.021164021164021163, 0.02175191064079953, 0.0205761316872428, 0.019988242210464434, 0.014697236919459141, 0.5114638447971781, 0.8806584362139918, 0.927689594356261, 0.7742504409171076, 0.36860670194003525, 0.11522633744855967, 0.11052322163433274, 0.0564373897707231, 0.052322163433274546, 0.059376837154614934, 0.04938271604938271, 0.05761316872427984, 0.01352145796590241, 0.6772486772486772, 0.8818342151675485, 0.9435626102292769, 0.9488536155202821, 0.9300411522633745, 0.824808935920047, 0.5943562610229277, 0.031746031746031744, 0.011757789535567314, 0.011757789535567314, 0.011169900058788948, 0.011169900058788948, 0.011757789535567314, 0.012345679012345678, 0.012345679012345678, 0.9370958259847149, 0.012933568489124045, 0.012933568489124045, 0.012933568489124045, 0.012345679012345678, 0.012345679012345678, 0.012933568489124045, 0.01352145796590241, 0.01352145796590241, 0.014109347442680775, 0.012933568489124045, 0.01352145796590241, 0.012933568489124045, 0.014697236919459141, 0.014697236919459141, 0.018224573780129337, 0.0205761316872428, 0.022339800117577895, 0.029394473838918283, 0.0393885949441505, 0.04056437389770723, 0.047031158142269255, 0.04938271604938271, 0.0564373897707231, 0.058788947677836566, 0.06290417401528513, 0.08112874779541446, 0.08700764256319812, 0.09465020576131687, 0.32157554379776604, 0.8142269253380364, 0.8536155202821869, 0.884185773074662, 0.9053497942386831, 0.927689594356261, 0.9394473838918284, 0.940623162845385, 0.9417989417989417, 0.9423868312757202, 0.9412110523221634, 0.940623162845385, 0.9347442680776014, 0.9235743680188124, 0.8953556731334509, 0.8594944150499706, 0.8500881834215167, 0.7642563198118754, 0.54673721340388, 0.48383303938859495, 0.22457378012933568, 0.1557907113462669, 0.11052322163433274, 0.10405643738977072, 0.102880658436214, 0.10640799529688419, 0.10758377425044091, 0.11405055849500294, 0.12110523221634333, 0.13403880070546736, 0.1369782480893592, 0.14991181657848324, 0.16696061140505586, 0.19988242210464433, 0.22986478542034097, 0.27807172251616696, 0.32098765432098764, 0.3315696649029982, 0.3856554967666079, 0.4626690182245738, 0.5778953556731334, 0.781305114638448], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BAR.gap.json b/pfam_gap_rates/BAR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1c7a5a6b99db0a6dabf51f338576fa0ddbcef12
--- /dev/null
+++ b/pfam_gap_rates/BAR.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/BBS1.gap.json b/pfam_gap_rates/BBS1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b596190e184126469c48be5ed02156b4a286a771
--- /dev/null
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diff --git a/pfam_gap_rates/BC10.gap.json b/pfam_gap_rates/BC10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3363eece713953ebb659f527bb126e5f85e6f64
--- /dev/null
+++ b/pfam_gap_rates/BC10.gap.json
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diff --git a/pfam_gap_rates/BCIP.gap.json b/pfam_gap_rates/BCIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3b81b11dc1d4faf8ac4d1de2bdb682fad72c2f6
--- /dev/null
+++ b/pfam_gap_rates/BCIP.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/BING4CT.gap.json b/pfam_gap_rates/BING4CT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c2d705066b0df32b0af067287fe8634305c43d1
--- /dev/null
+++ b/pfam_gap_rates/BING4CT.gap.json
@@ -0,0 +1 @@
+{"family": "BING4CT", "n_seqs": 354, "length": 80, "gap_rates": [0.3531073446327684, 0.096045197740113, 0.08192090395480225, 0.07909604519774012, 0.07344632768361582, 0.847457627118644, 0.07344632768361582, 0.11864406779661017, 0.07344632768361582, 0.07344632768361582, 0.1977401129943503, 0.031073446327683617, 0.02824858757062147, 0.022598870056497175, 0.01977401129943503, 0.01977401129943503, 0.01977401129943503, 0.01977401129943503, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.011299435028248588, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.01977401129943503, 0.01977401129943503, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.022598870056497175, 0.01694915254237288, 0.01977401129943503, 0.01694915254237288, 0.01694915254237288, 0.014124293785310734, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.014124293785310734, 0.01694915254237288, 0.01977401129943503, 0.01977401129943503, 0.01977401129943503, 0.022598870056497175, 0.025423728813559324, 0.025423728813559324, 0.02824858757062147, 0.031073446327683617, 0.031073446327683617, 0.031073446327683617, 0.03954802259887006, 0.0423728813559322, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.06497175141242938, 0.07344632768361582, 0.1440677966101695], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BNR_2.gap.json b/pfam_gap_rates/BNR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1780c958103be4b42890b2d718c79e9c4f63a652
--- /dev/null
+++ b/pfam_gap_rates/BNR_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BOF.gap.json b/pfam_gap_rates/BOF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..efb190fec7a744badd8651cb559c9f8c3a436d8f
--- /dev/null
+++ b/pfam_gap_rates/BOF.gap.json
@@ -0,0 +1 @@
+{"family": "BOF", "n_seqs": 110, "length": 112, "gap_rates": [0.9272727272727272, 0.8818181818181818, 0.8363636363636363, 0.8090909090909091, 0.8, 0.7181818181818181, 0.6363636363636364, 0.5636363636363636, 0.509090909090909, 0.45454545454545453, 0.42727272727272725, 0.41818181818181815, 0.39090909090909093, 0.3181818181818182, 0.3, 0.34545454545454546, 0.2727272727272727, 0.24545454545454545, 0.20909090909090908, 0.8909090909090909, 0.6090909090909091, 0.15454545454545454, 0.13636363636363635, 0.10909090909090909, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.9454545454545454, 0.05454545454545454, 0.9, 0.03636363636363636, 0.01818181818181818, 0.9181818181818182, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.0, 0.0, 0.00909090909090909, 0.0, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8818181818181818, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01818181818181818, 0.00909090909090909, 0.03636363636363636, 0.02727272727272727, 0.9272727272727272, 0.03636363636363636, 0.01818181818181818, 0.02727272727272727, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.00909090909090909, 0.8181818181818182, 0.00909090909090909, 0.01818181818181818, 0.02727272727272727, 0.9363636363636364, 0.01818181818181818, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.06363636363636363, 0.06363636363636363, 0.08181818181818182, 0.13636363636363635, 0.2, 0.4818181818181818, 0.8], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BORG_CEP.gap.json b/pfam_gap_rates/BORG_CEP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e4ebb1cc2508486ef64df93dc9d4e152c8d4428
--- /dev/null
+++ b/pfam_gap_rates/BORG_CEP.gap.json
@@ -0,0 +1 @@
+{"family": "BORG_CEP", "n_seqs": 101, "length": 198, "gap_rates": [0.22772277227722773, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.6633663366336634, 0.6138613861386139, 0.2079207920792079, 0.2079207920792079, 0.18811881188118812, 0.1782178217821782, 0.21782178217821782, 0.297029702970297, 0.22772277227722773, 0.21782178217821782, 0.21782178217821782, 0.2079207920792079, 0.2079207920792079, 0.45544554455445546, 0.38613861386138615, 0.7722772277227723, 0.7821782178217822, 0.7821782178217822, 0.7821782178217822, 0.801980198019802, 0.801980198019802, 0.801980198019802, 0.7821782178217822, 0.7821782178217822, 0.7722772277227723, 0.7623762376237624, 0.4752475247524752, 0.45544554455445546, 0.44554455445544555, 0.44554455445544555, 0.42574257425742573, 0.42574257425742573, 0.6138613861386139, 0.6237623762376238, 0.5445544554455446, 0.4158415841584158, 0.21782178217821782, 0.2079207920792079, 0.1782178217821782, 0.1782178217821782, 0.1782178217821782, 0.16831683168316833, 0.1485148514851485, 0.1485148514851485, 0.1485148514851485, 0.15841584158415842, 0.16831683168316833, 0.15841584158415842, 0.26732673267326734, 0.24752475247524752, 0.44554455445544555, 0.37623762376237624, 0.32673267326732675, 0.27722772277227725, 0.25742574257425743, 0.25742574257425743, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.7326732673267327, 0.9108910891089109, 0.9405940594059405, 0.8415841584158416, 0.6732673267326733, 0.33663366336633666, 0.46534653465346537, 0.46534653465346537, 0.4158415841584158, 0.32673267326732675, 0.8217821782178217, 0.8316831683168316, 0.8811881188118812, 0.9207920792079208, 0.9306930693069307, 0.9405940594059405, 0.9405940594059405, 0.9405940594059405, 0.9405940594059405, 0.9306930693069307, 0.8811881188118812, 0.8712871287128713, 0.8217821782178217, 0.7722772277227723, 0.43564356435643564, 0.5742574257425742, 0.4752475247524752, 0.2871287128712871, 0.7821782178217822, 0.8118811881188119, 0.8316831683168316, 0.8811881188118812, 0.9108910891089109, 0.9306930693069307, 0.9306930693069307, 0.900990099009901, 0.8613861386138614, 0.8118811881188119, 0.8118811881188119, 0.7821782178217822, 0.16831683168316833, 0.18811881188118812, 0.18811881188118812, 0.1782178217821782, 0.1782178217821782, 0.1782178217821782, 0.1782178217821782, 0.1782178217821782, 0.15841584158415842, 0.16831683168316833, 0.1782178217821782, 0.1782178217821782, 0.22772277227722773, 0.19801980198019803, 0.21782178217821782, 0.1782178217821782, 0.7326732673267327, 0.7425742574257426, 0.7425742574257426, 0.7425742574257426, 0.7425742574257426, 0.7524752475247525, 0.7722772277227723, 0.7821782178217822, 0.7920792079207921, 0.7920792079207921, 0.8118811881188119, 0.9405940594059405, 0.9405940594059405, 0.9405940594059405, 0.8910891089108911, 0.7920792079207921, 0.7920792079207921, 0.7920792079207921, 0.7821782178217822, 0.7722772277227723, 0.7524752475247525, 0.7425742574257426, 0.7425742574257426, 0.7425742574257426, 0.7425742574257426, 0.7227722772277227, 0.43564356435643564, 0.38613861386138615, 0.33663366336633666, 0.25742574257425743, 0.10891089108910891, 0.1188118811881188, 0.06930693069306931, 0.8613861386138614, 0.8910891089108911, 0.9207920792079208, 0.9207920792079208, 0.8910891089108911, 0.8712871287128713, 0.8514851485148515, 0.039603960396039604, 0.0297029702970297, 0.009900990099009901, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9108910891089109, 0.9108910891089109, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.009900990099009901, 0.0297029702970297, 0.0297029702970297, 0.04950495049504951, 0.21782178217821782, 0.8118811881188119], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BRAP2.gap.json b/pfam_gap_rates/BRAP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..315bffa996040ad22fad5af7b01d980a0e957a1d
--- /dev/null
+++ b/pfam_gap_rates/BRAP2.gap.json
@@ -0,0 +1 @@
+{"family": "BRAP2", "n_seqs": 317, "length": 100, "gap_rates": [0.9337539432176656, 0.6813880126182965, 0.39747634069400634, 0.24605678233438485, 0.17034700315457413, 0.138801261829653, 0.10725552050473186, 0.0946372239747634, 0.0914826498422713, 0.0914826498422713, 0.0914826498422713, 0.0914826498422713, 0.0914826498422713, 0.08517350157728706, 0.08517350157728706, 0.08517350157728706, 0.08517350157728706, 0.07255520504731862, 0.07255520504731862, 0.07255520504731862, 0.07255520504731862, 0.07570977917981073, 0.07570977917981073, 0.07255520504731862, 0.07255520504731862, 0.07570977917981073, 0.07570977917981073, 0.07570977917981073, 0.722397476340694, 0.07570977917981073, 0.07570977917981073, 0.07886435331230283, 0.07255520504731862, 0.06624605678233439, 0.06624605678233439, 0.06624605678233439, 0.06624605678233439, 0.06309148264984227, 0.05993690851735016, 0.056782334384858045, 0.056782334384858045, 0.05993690851735016, 0.7665615141955836, 0.0694006309148265, 0.0694006309148265, 0.056782334384858045, 0.05993690851735016, 0.056782334384858045, 0.05362776025236593, 0.050473186119873815, 0.03785488958990536, 0.04100946372239748, 0.04100946372239748, 0.03785488958990536, 0.03785488958990536, 0.03470031545741325, 0.03470031545741325, 0.031545741324921134, 0.031545741324921134, 0.031545741324921134, 0.025236593059936908, 0.022082018927444796, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.03470031545741325, 0.031545741324921134, 0.031545741324921134, 0.031545741324921134, 0.031545741324921134, 0.03470031545741325, 0.03785488958990536, 0.03785488958990536, 0.04416403785488959, 0.0473186119873817, 0.0473186119873817, 0.917981072555205, 0.056782334384858045, 0.056782334384858045, 0.05993690851735016, 0.05993690851735016, 0.06624605678233439, 0.06624605678233439, 0.0694006309148265, 0.07255520504731862, 0.08201892744479496, 0.08517350157728706, 0.10410094637223975, 0.12933753943217666, 0.19558359621451105, 0.3186119873817035, 0.48264984227129337, 0.5993690851735016, 0.750788643533123, 0.889589905362776], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/B_lectin.gap.json b/pfam_gap_rates/B_lectin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11c361e7294d5aca3a4b94d6c6aa1f166a113a82
--- /dev/null
+++ b/pfam_gap_rates/B_lectin.gap.json
@@ -0,0 +1 @@
+{"family": "B_lectin", "n_seqs": 2733, "length": 123, "gap_rates": [0.6977680204903037, 0.3417489937797292, 0.260885473838273, 0.23600439077936333, 0.234540797658251, 0.22941822173435786, 0.22319795096963044, 0.21624588364434688, 0.20856201975850713, 0.20160995243322358, 0.19392608854738383, 0.18624222466154408, 0.18331503841931943, 0.33772411269667035, 0.16611781924624955, 0.8968166849615807, 0.933772411269667, 0.7413099158433956, 0.13135748261983168, 0.12330772045371387, 0.10537870472008781, 0.09549945115257959, 0.07976582510062202, 0.0739114526161727, 0.06622758873033296, 0.06622758873033296, 0.0889132821075741, 0.06000731796560556, 0.057446030003658985, 0.06842297841200147, 0.054884742041712405, 0.048298572996706916, 0.04756677643615075, 0.04683497987559458, 0.9264544456641054, 0.9436516648371752, 0.9224295645810465, 0.059641419685327476, 0.8536406878887669, 0.1818514452982071, 0.04939626783754116, 0.04171240395170143, 0.042810098792535674, 0.0380534211489206, 0.03658982802780827, 0.03658982802780827, 0.035858031467252104, 0.03219904866447128, 0.03110135382363703, 0.030735455543358946, 0.03110135382363703, 0.8609586534943285, 0.9392608854738382, 0.911452616172704, 0.5916575192096597, 0.3472374679839005, 0.08818148554701793, 0.08269301134284669, 0.12111233077204538, 0.41968532747896087, 0.34540797658251005, 0.234540797658251, 0.02707647274057812, 0.024881083058909622, 0.02305159165751921, 0.01500182949140139, 0.014635931211123308, 0.011708744968898645, 0.011708744968898645, 0.009879253567508232, 0.010611050128064398, 0.010245151847786316, 0.010245151847786316, 0.014270032930845226, 0.013172338090010977, 0.012074643249176729, 0.012074643249176729, 0.8090010976948409, 0.9443834613977314, 0.8353457738748628, 0.6809366995975119, 0.5411635565312843, 0.08342480790340286, 0.03732162458836443, 0.028174167581412366, 0.031833150384193196, 0.03000365898280278, 0.024149286498353458, 0.02854006586169045, 0.03951701427003293, 0.05195755579948774, 0.056714233443102814, 0.07317965605561653, 0.08635199414562751, 0.10501280643980973, 0.12221002561287962, 0.14892060007317964, 0.14928649835345773, 0.15075009147457008, 0.1478229052323454, 0.14416392242956458, 0.14745700695206732, 0.14892060007317964, 0.15001829491401392, 0.15477497255762898, 0.17636297109403587, 0.8792535675082327, 0.2411269667032565, 0.907061836809367, 0.3552872301500183, 0.36443468715697036, 0.3812660080497622, 0.4676180021953897, 0.4701792901573363, 0.49066959385290887, 0.4844493230881815, 0.4844493230881815, 0.4782290523234541, 0.4829857299670692, 0.4862788144895719, 0.4950603732162459, 0.5126234906695939, 0.5993413830954994], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Band_7_C.gap.json b/pfam_gap_rates/Band_7_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58741d032efb227c47e1a3a0206cd68a299f10f4
--- /dev/null
+++ b/pfam_gap_rates/Band_7_C.gap.json
@@ -0,0 +1 @@
+{"family": "Band_7_C", "n_seqs": 552, "length": 69, "gap_rates": [0.6684782608695652, 0.10507246376811594, 0.04891304347826087, 0.041666666666666664, 0.03804347826086957, 0.03804347826086957, 0.03260869565217391, 0.028985507246376812, 0.025362318840579712, 0.17391304347826086, 0.8786231884057971, 0.8297101449275363, 0.019927536231884056, 0.014492753623188406, 0.010869565217391304, 0.009057971014492754, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.005434782608695652, 0.007246376811594203, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0018115942028985507, 0.0036231884057971015, 0.947463768115942, 0.9166666666666666, 0.0036231884057971015, 0.0, 0.0018115942028985507, 0.0018115942028985507, 0.0018115942028985507, 0.9166666666666666, 0.9130434782608695, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.007246376811594203, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.007246376811594203, 0.012681159420289856, 0.021739130434782608, 0.021739130434782608, 0.02355072463768116, 0.03260869565217391, 0.03985507246376811, 0.04891304347826087, 0.05615942028985507, 0.08152173913043478, 0.08514492753623189, 0.09057971014492754, 0.09963768115942029, 0.1105072463768116, 0.18840579710144928, 0.31521739130434784, 0.5217391304347826, 0.9148550724637681], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bap31.gap.json b/pfam_gap_rates/Bap31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6050fe9e92405531b048329effc3e0bbb63d827
--- /dev/null
+++ b/pfam_gap_rates/Bap31.gap.json
@@ -0,0 +1 @@
+{"family": "Bap31", "n_seqs": 414, "length": 231, "gap_rates": [0.41304347826086957, 0.4082125603864734, 0.4033816425120773, 0.3888888888888889, 0.3695652173913043, 0.3115942028985507, 0.24154589371980675, 0.2318840579710145, 0.2318840579710145, 0.22946859903381642, 0.21256038647342995, 0.21256038647342995, 0.21256038647342995, 0.21256038647342995, 0.21014492753623187, 0.18115942028985507, 0.18357487922705315, 0.1859903381642512, 0.1859903381642512, 0.1859903381642512, 0.18357487922705315, 0.18357487922705315, 0.18115942028985507, 0.2246376811594203, 0.27053140096618356, 0.19806763285024154, 0.17632850241545894, 0.16908212560386474, 0.17391304347826086, 0.16908212560386474, 0.16908212560386474, 0.7270531400966184, 0.28743961352657005, 0.17391304347826086, 0.17149758454106281, 0.17391304347826086, 0.16666666666666666, 0.16183574879227053, 0.1570048309178744, 0.16183574879227053, 0.15217391304347827, 0.15217391304347827, 0.15458937198067632, 0.1570048309178744, 0.1497584541062802, 0.13768115942028986, 0.14492753623188406, 0.1473429951690821, 0.14492753623188406, 0.14251207729468598, 0.14009661835748793, 0.13768115942028986, 0.13526570048309178, 0.13285024154589373, 0.13285024154589373, 0.13285024154589373, 0.13285024154589373, 0.1280193236714976, 0.13043478260869565, 0.13043478260869565, 0.1280193236714976, 0.1280193236714976, 0.13043478260869565, 0.12560386473429952, 0.13285024154589373, 0.13043478260869565, 0.12318840579710146, 0.12077294685990338, 0.12560386473429952, 0.12560386473429952, 0.12560386473429952, 0.12318840579710146, 0.1280193236714976, 0.1280193236714976, 0.1280193236714976, 0.1280193236714976, 0.13043478260869565, 0.14009661835748793, 0.1473429951690821, 0.1570048309178744, 0.6014492753623188, 0.7222222222222222, 0.8260869565217391, 0.9444444444444444, 0.8792270531400966, 0.782608695652174, 0.642512077294686, 0.5217391304347826, 0.28019323671497587, 0.34299516908212563, 0.21014492753623187, 0.15942028985507245, 0.1473429951690821, 0.14251207729468598, 0.14009661835748793, 0.13768115942028986, 0.1280193236714976, 0.1280193236714976, 0.1280193236714976, 0.1280193236714976, 0.12560386473429952, 0.11835748792270531, 0.11835748792270531, 0.11594202898550725, 0.11352657004830918, 0.10869565217391304, 0.11594202898550725, 0.22705314009661837, 0.23429951690821257, 0.21014492753623187, 0.1956521739130435, 0.0966183574879227, 0.06280193236714976, 0.06280193236714976, 0.05555555555555555, 0.05314009661835749, 0.050724637681159424, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.05314009661835749, 0.05555555555555555, 0.05314009661835749, 0.05555555555555555, 0.05555555555555555, 0.05314009661835749, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.06038647342995169, 0.06038647342995169, 0.06038647342995169, 0.06038647342995169, 0.06280193236714976, 0.06280193236714976, 0.06280193236714976, 0.06280193236714976, 0.06280193236714976, 0.07246376811594203, 0.07246376811594203, 0.06763285024154589, 0.07004830917874397, 0.07246376811594203, 0.07729468599033816, 0.0821256038647343, 0.0821256038647343, 0.08695652173913043, 0.09903381642512077, 0.12560386473429952, 0.14251207729468598, 0.15458937198067632, 0.24879227053140096, 0.3188405797101449, 0.3115942028985507, 0.34299516908212563, 0.38405797101449274, 0.3961352657004831, 0.38405797101449274, 0.6256038647342995, 0.644927536231884, 0.7560386473429952, 0.8043478260869565, 0.8381642512077294, 0.8816425120772947, 0.8961352657004831, 0.9082125603864735, 0.9178743961352657, 0.9347826086956522, 0.9202898550724637, 0.9082125603864735, 0.9009661835748792, 0.893719806763285, 0.8454106280193237, 0.8236714975845411, 0.7971014492753623, 0.7342995169082126, 0.6256038647342995, 0.5917874396135265, 0.37681159420289856, 0.47101449275362317, 0.41545893719806765, 0.37681159420289856, 0.2632850241545894, 0.9444444444444444, 0.9492753623188406, 0.9420289855072463, 0.21497584541062803, 0.19082125603864733, 0.16908212560386474, 0.15217391304347827, 0.13526570048309178, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13285024154589373, 0.13285024154589373, 0.13285024154589373, 0.13526570048309178, 0.13526570048309178, 0.14009661835748793, 0.1473429951690821, 0.1570048309178744, 0.15942028985507245, 0.16666666666666666, 0.5120772946859904, 0.5072463768115942, 0.5096618357487923, 0.5024154589371981, 0.4227053140096618, 0.427536231884058, 0.42995169082125606, 0.1932367149758454, 0.1932367149758454, 0.1956521739130435, 0.20048309178743962, 0.20048309178743962, 0.20048309178743962, 0.2028985507246377, 0.2028985507246377, 0.20531400966183574, 0.21014492753623187, 0.21014492753623187, 0.21014492753623187, 0.21497584541062803, 0.21497584541062803, 0.21497584541062803, 0.21980676328502416, 0.23671497584541062, 0.3357487922705314], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Beta-lactamase.gap.json b/pfam_gap_rates/Beta-lactamase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f29a6ef086b0564410e0956e6989c055533e0768
--- /dev/null
+++ b/pfam_gap_rates/Beta-lactamase.gap.json
@@ -0,0 +1 @@
+{"family": "Beta-lactamase", "n_seqs": 5000, "length": 444, "gap_rates": [0.8976, 0.7658, 0.691, 0.6414, 0.5906, 0.5622, 0.537, 0.5174, 0.4962, 0.4724, 0.5318, 0.4646, 0.432, 0.3674, 0.3318, 0.306, 0.2838, 0.2318, 0.185, 0.17, 0.1638, 0.1618, 0.1596, 0.157, 0.1544, 0.1528, 0.1504, 0.1534, 0.1936, 0.1636, 0.1606, 0.1564, 0.232, 0.183, 0.3458, 0.3366, 0.3154, 0.3002, 0.2934, 0.285, 0.277, 0.2932, 0.9458, 0.1138, 0.1082, 0.0942, 0.0896, 0.0846, 0.0814, 0.0784, 0.0768, 0.0714, 0.0658, 0.0636, 0.0632, 0.063, 0.0632, 0.063, 0.0624, 0.062, 0.0618, 0.0614, 0.062, 0.062, 0.062, 0.91, 0.0632, 0.064, 0.0636, 0.0636, 0.0618, 0.0612, 0.06, 0.0734, 0.069, 0.067, 0.0594, 0.0582, 0.0578, 0.0572, 0.0576, 0.9458, 0.9416, 0.0894, 0.093, 0.0886, 0.0876, 0.1584, 0.5496, 0.7044, 0.8456, 0.8676, 0.8794, 0.8986, 0.9106, 0.9468, 0.9172, 0.9042, 0.8894, 0.8718, 0.8618, 0.81, 0.6068, 0.5222, 0.156, 0.1864, 0.1384, 0.1174, 0.113, 0.0774, 0.0714, 0.0668, 0.193, 0.0622, 0.06, 0.0588, 0.0586, 0.0586, 0.0588, 0.0588, 0.0588, 0.0584, 0.0588, 0.0596, 0.0592, 0.06, 0.1078, 0.1084, 0.1026, 0.4126, 0.1984, 0.162, 0.1404, 0.115, 0.1052, 0.1052, 0.108, 0.1166, 0.1414, 0.2644, 0.26, 0.1938, 0.4288, 0.5686, 0.6552, 0.7368, 0.7906, 0.8408, 0.881, 0.901, 0.9228, 0.9356, 0.946, 0.942, 0.931, 0.9152, 0.893, 0.8634, 0.817, 0.7618, 0.694, 0.6154, 0.4934, 0.3854, 0.1646, 0.1216, 0.1162, 0.113, 0.1092, 0.1042, 0.1038, 0.1022, 0.0852, 0.0808, 0.0776, 0.0756, 0.075, 0.0954, 0.1194, 0.9308, 0.9106, 0.0806, 0.0706, 0.0656, 0.0618, 0.0664, 0.0772, 0.0594, 0.059, 0.0616, 0.063, 0.0598, 0.0594, 0.1518, 0.9106, 0.0594, 0.0584, 0.0584, 0.0582, 0.0676, 0.0582, 0.058, 0.0586, 0.058, 0.0588, 0.949, 0.9356, 0.0604, 0.073, 0.0658, 0.0604, 0.0604, 0.06, 0.0608, 0.0608, 0.0752, 0.0642, 0.0644, 0.0634, 0.0624, 0.0618, 0.0612, 0.1266, 0.0726, 0.0682, 0.0706, 0.0698, 0.0678, 0.0676, 0.0674, 0.0682, 0.0676, 0.0812, 0.0762, 0.0768, 0.0768, 0.1672, 0.138, 0.116, 0.107, 0.102, 0.101, 0.1024, 0.112, 0.3714, 0.3416, 0.3314, 0.3086, 0.3038, 0.2864, 0.2812, 0.271, 0.2632, 0.2592, 0.2584, 0.2604, 0.2654, 0.2796, 0.3054, 0.3176, 0.349, 0.3848, 0.282, 0.4828, 0.5682, 0.6444, 0.7256, 0.782, 0.8226, 0.846, 0.8626, 0.8784, 0.8898, 0.9106, 0.9224, 0.9316, 0.9408, 0.9484, 0.9452, 0.9348, 0.9274, 0.9176, 0.9046, 0.8844, 0.8704, 0.8572, 0.836, 0.8038, 0.7526, 0.6804, 0.6086, 0.5284, 0.4226, 0.2476, 0.2258, 0.198, 0.137, 0.1184, 0.067, 0.0662, 0.0654, 0.0656, 0.0658, 0.0652, 0.0652, 0.0656, 0.0658, 0.066, 0.0666, 0.7236, 0.7586, 0.84, 0.9306, 0.9468, 0.94, 0.9192, 0.78, 0.7486, 0.6536, 0.382, 0.2312, 0.2458, 0.233, 0.2266, 0.1978, 0.1268, 0.1196, 0.1138, 0.1102, 0.103, 0.0996, 0.095, 0.0996, 0.1008, 0.1022, 0.113, 0.1102, 0.8902, 0.9194, 0.9334, 0.948, 0.9384, 0.9272, 0.9104, 0.8566, 0.247, 0.2344, 0.2036, 0.181, 0.1558, 0.14, 0.1342, 0.1246, 0.12, 0.1358, 0.1252, 0.1166, 0.1176, 0.149, 0.1338, 0.1268, 0.1334, 0.1384, 0.8174, 0.8902, 0.9296, 0.9434, 0.9136, 0.8612, 0.7664, 0.1216, 0.1192, 0.112, 0.1086, 0.1146, 0.1144, 0.1126, 0.1408, 0.166, 0.1738, 0.1808, 0.3798, 0.5866, 0.6644, 0.7584, 0.8476, 0.9092, 0.9346, 0.9492, 0.944, 0.9246, 0.8886, 0.8128, 0.7188, 0.6272, 0.5532, 0.178, 0.161, 0.1396, 0.1192, 0.1162, 0.1146, 0.1128, 0.108, 0.5828, 0.5578, 0.5416, 0.1078, 0.106, 0.1068, 0.1062, 0.1198, 0.1172, 0.1128, 0.1138, 0.115, 0.1164, 0.1182, 0.1192, 0.1216, 0.1248, 0.1252, 0.1276, 0.1306, 0.1538, 0.1728, 0.1896, 0.2082, 0.2272, 0.2582, 0.2906, 0.3936, 0.6712, 0.604, 0.633, 0.685, 0.7308, 0.769, 0.8022, 0.832, 0.8598, 0.883, 0.9074, 0.933], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Big_3_3.gap.json b/pfam_gap_rates/Big_3_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47322affb54b1c126451e9b94799bba687992c9a
--- /dev/null
+++ b/pfam_gap_rates/Big_3_3.gap.json
@@ -0,0 +1 @@
+{"family": "Big_3_3", "n_seqs": 111, "length": 150, "gap_rates": [0.7927927927927928, 0.6036036036036037, 0.5675675675675675, 0.44144144144144143, 0.38738738738738737, 0.35135135135135137, 0.35135135135135137, 0.3153153153153153, 0.27927927927927926, 0.21621621621621623, 0.16216216216216217, 0.11711711711711711, 0.07207207207207207, 0.05405405405405406, 0.036036036036036036, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.9279279279279279, 0.9279279279279279, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.9369369369369369, 0.018018018018018018, 0.018018018018018018, 0.02702702702702703, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.05405405405405406, 0.3783783783783784, 0.15315315315315314, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.018018018018018018, 0.009009009009009009, 0.009009009009009009, 0.02702702702702703, 0.02702702702702703, 0.036036036036036036, 0.02702702702702703, 0.02702702702702703, 0.8828828828828829, 0.8108108108108109, 0.6486486486486487, 0.6216216216216216, 0.4864864864864865, 0.10810810810810811, 0.10810810810810811, 0.09009009009009009, 0.0990990990990991, 0.09009009009009009, 0.11711711711711711, 0.14414414414414414, 0.17117117117117117, 0.18018018018018017, 0.22522522522522523, 0.2702702702702703, 0.2972972972972973, 0.2882882882882883, 0.2882882882882883, 0.32432432432432434, 0.3153153153153153, 0.3333333333333333, 0.34234234234234234, 0.36036036036036034, 0.35135135135135137, 0.36036036036036034, 0.38738738738738737, 0.42342342342342343, 0.4774774774774775, 0.4864864864864865, 0.5405405405405406, 0.8828828828828829, 0.5585585585585585, 0.5405405405405406, 0.5855855855855856, 0.5945945945945946, 0.5675675675675675, 0.5855855855855856, 0.6036036036036037, 0.6216216216216216, 0.6396396396396397, 0.7117117117117117, 0.6936936936936937, 0.7207207207207207, 0.7387387387387387, 0.7477477477477478, 0.7387387387387387, 0.7027027027027027, 0.7027027027027027, 0.7117117117117117, 0.7117117117117117, 0.7117117117117117, 0.7117117117117117, 0.7297297297297297, 0.7387387387387387, 0.7297297297297297, 0.7207207207207207, 0.7207207207207207, 0.7477477477477478, 0.7477477477477478, 0.7477477477477478, 0.7387387387387387, 0.7387387387387387, 0.7657657657657657, 0.8018018018018018, 0.7927927927927928, 0.8018018018018018, 0.8378378378378378, 0.8108108108108109, 0.7477477477477478, 0.7477477477477478, 0.7387387387387387, 0.7297297297297297, 0.7297297297297297, 0.7567567567567568, 0.7297297297297297, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7207207207207207, 0.7297297297297297, 0.7297297297297297, 0.7297297297297297, 0.7387387387387387, 0.7657657657657657, 0.7837837837837838, 0.8108108108108109, 0.8288288288288288], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Big_4.gap.json b/pfam_gap_rates/Big_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d3f6ddc431733365edb8a2610750abc27f0d6f0
--- /dev/null
+++ b/pfam_gap_rates/Big_4.gap.json
@@ -0,0 +1 @@
+{"family": "Big_4", "n_seqs": 430, "length": 68, "gap_rates": [0.8558139534883721, 0.6348837209302326, 0.5069767441860465, 0.4441860465116279, 0.39069767441860465, 0.30697674418604654, 0.2651162790697674, 0.1744186046511628, 0.16511627906976745, 0.12093023255813953, 0.07441860465116279, 0.046511627906976744, 0.037209302325581395, 0.9372093023255814, 0.9372093023255814, 0.9348837209302325, 0.037209302325581395, 0.9395348837209302, 0.9441860465116279, 0.9372093023255814, 0.01627906976744186, 0.013953488372093023, 0.013953488372093023, 0.013953488372093023, 0.01627906976744186, 0.009302325581395349, 0.0069767441860465115, 0.002325581395348837, 0.002325581395348837, 0.002325581395348837, 0.0069767441860465115, 0.004651162790697674, 0.002325581395348837, 0.002325581395348837, 0.004651162790697674, 0.05116279069767442, 0.9209302325581395, 0.002325581395348837, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013953488372093023, 0.9, 0.7906976744186046, 0.037209302325581395, 0.06511627906976744, 0.39069767441860465, 0.030232558139534883, 0.020930232558139535, 0.013953488372093023, 0.009302325581395349, 0.0069767441860465115, 0.009302325581395349, 0.013953488372093023, 0.01627906976744186, 0.020930232558139535, 0.023255813953488372, 0.020930232558139535, 0.023255813953488372, 0.027906976744186046, 0.030232558139534883, 0.05813953488372093, 0.1, 0.27674418604651163, 0.5069767441860465, 0.7976744186046512], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BioY.gap.json b/pfam_gap_rates/BioY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01c405f96862c9103c349538938431495642b8f0
--- /dev/null
+++ b/pfam_gap_rates/BioY.gap.json
@@ -0,0 +1 @@
+{"family": "BioY", "n_seqs": 1239, "length": 161, "gap_rates": [0.6892655367231638, 0.3301049233252623, 0.09443099273607748, 0.06295399515738499, 0.03631961259079903, 0.01694915254237288, 0.016142050040355124, 0.016142050040355124, 0.013720742534301856, 0.013720742534301856, 0.0129136400322841, 0.0129136400322841, 0.0129136400322841, 0.0129136400322841, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.016142050040355124, 0.0129136400322841, 0.01775625504439064, 0.011299435028248588, 0.010492332526230832, 0.010492332526230832, 0.010492332526230832, 0.010492332526230832, 0.008071025020177562, 0.008071025020177562, 0.008071025020177562, 0.008071025020177562, 0.008071025020177562, 0.007263922518159807, 0.007263922518159807, 0.007263922518159807, 0.007263922518159807, 0.008071025020177562, 0.031476997578692496, 0.011299435028248588, 0.011299435028248588, 0.010492332526230832, 0.009685230024213076, 0.00887812752219532, 0.00887812752219532, 0.5738498789346247, 0.007263922518159807, 0.5722356739305892, 0.009685230024213076, 0.00887812752219532, 0.013720742534301856, 0.021791767554479417, 0.031476997578692496, 0.042776432606941084, 0.04035512510088781, 0.02744148506860371, 0.005649717514124294, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.00645682001614205, 0.007263922518159807, 0.008071025020177562, 0.007263922518159807, 0.007263922518159807, 0.00645682001614205, 0.00645682001614205, 0.00645682001614205, 0.00645682001614205, 0.00645682001614205, 0.00645682001614205, 0.03954802259887006, 0.2195318805488297, 0.6908797417271993, 0.8571428571428571, 0.9160613397901534, 0.9418886198547215, 0.8821630347054076, 0.8159806295399515, 0.4293785310734463, 0.096045197740113, 0.024213075060532687, 0.008071025020177562, 0.8006456820016142, 0.042776432606941084, 0.778046811945117, 0.18886198547215496, 0.018563357546408393, 0.01775625504439064, 0.01533494753833737, 0.012106537530266344, 0.009685230024213076, 0.008071025020177562, 0.010492332526230832, 0.00887812752219532, 0.009685230024213076, 0.012106537530266344, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.9475383373688459, 0.00887812752219532, 0.1606133979015335, 0.6965294592413237, 0.7344632768361582, 0.807909604519774, 0.7522195318805488, 0.7199354317998385, 0.6844229217110573, 0.14447134786117838, 0.016142050040355124, 0.020984665052461663, 0.016142050040355124, 0.016142050040355124, 0.01775625504439064, 0.9491525423728814, 0.01937046004842615, 0.07102502017756256, 0.08797417271993543, 0.022598870056497175, 0.025020177562550445, 0.018563357546408393, 0.03389830508474576, 0.0129136400322841, 0.016142050040355124, 0.02986279257465698, 0.0129136400322841, 0.0129136400322841, 0.0129136400322841, 0.0129136400322841, 0.0129136400322841, 0.0129136400322841, 0.013720742534301856, 0.013720742534301856, 0.013720742534301856, 0.013720742534301856, 0.014527845036319613, 0.01694915254237288, 0.018563357546408393, 0.03066989507667474, 0.04519774011299435, 0.09120258272800645, 0.13962873284907182, 0.4180790960451977, 0.8635996771589992], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bot1p.gap.json b/pfam_gap_rates/Bot1p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed786b21d13c075e744f6db72897cc73aa102f9f
--- /dev/null
+++ b/pfam_gap_rates/Bot1p.gap.json
@@ -0,0 +1 @@
+{"family": "Bot1p", "n_seqs": 180, "length": 201, "gap_rates": [0.5, 0.32222222222222224, 0.3055555555555556, 0.3, 0.3, 0.2777777777777778, 0.2722222222222222, 0.2722222222222222, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.25555555555555554, 0.23333333333333334, 0.22777777777777777, 0.11666666666666667, 0.08333333333333333, 0.08333333333333333, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.07777777777777778, 0.06666666666666667, 0.06111111111111111, 0.06666666666666667, 0.05555555555555555, 0.06666666666666667, 0.1, 0.6666666666666666, 0.6666666666666666, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07222222222222222, 0.07777777777777778, 0.08333333333333333, 0.08888888888888889, 0.08888888888888889, 0.8666666666666667, 0.8444444444444444, 0.2388888888888889, 0.2, 0.18888888888888888, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.15, 0.15555555555555556, 0.17222222222222222, 0.17777777777777778, 0.18888888888888888, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.17777777777777778, 0.18333333333333332, 0.19444444444444445, 0.2, 0.2, 0.32222222222222224, 0.31666666666666665, 0.6444444444444445, 0.8, 0.9166666666666666, 0.8666666666666667, 0.6833333333333333, 0.6111111111111112, 0.26666666666666666, 0.3333333333333333, 0.29444444444444445, 0.31666666666666665, 0.43333333333333335, 0.4111111111111111, 0.32222222222222224, 0.3055555555555556, 0.3111111111111111, 0.3111111111111111, 0.9055555555555556, 0.9111111111111111, 0.9222222222222223, 0.9277777777777778, 0.9277777777777778, 0.9277777777777778, 0.9277777777777778, 0.9277777777777778, 0.95, 0.95, 0.9277777777777778, 0.9277777777777778, 0.9277777777777778, 0.9277777777777778, 0.9277777777777778, 0.9222222222222223, 0.9166666666666666, 0.9111111111111111, 0.9055555555555556, 0.3277777777777778, 0.3388888888888889, 0.34444444444444444, 0.3388888888888889, 0.3388888888888889, 0.3388888888888889, 0.34444444444444444, 0.37777777777777777, 0.37222222222222223, 0.34444444444444444, 0.35, 0.35, 0.35, 0.35, 0.35, 0.3611111111111111, 0.3611111111111111, 0.36666666666666664, 0.3888888888888889, 0.3888888888888889, 0.39444444444444443, 0.39444444444444443, 0.37777777777777777, 0.37777777777777777, 0.37777777777777777, 0.37777777777777777, 0.38333333333333336, 0.3888888888888889, 0.3888888888888889, 0.3888888888888889, 0.3888888888888889, 0.39444444444444443, 0.3888888888888889, 0.3888888888888889, 0.43333333333333335, 0.4166666666666667, 0.7222222222222222, 0.7166666666666667, 0.40555555555555556, 0.4111111111111111, 0.4111111111111111, 0.4111111111111111, 0.4166666666666667, 0.4222222222222222, 0.43333333333333335, 0.43333333333333335, 0.4444444444444444, 0.45, 0.46111111111111114, 0.4666666666666667, 0.4722222222222222, 0.4722222222222222, 0.4722222222222222, 0.4777777777777778, 0.5166666666666667, 0.5055555555555555, 0.5111111111111111, 0.5111111111111111, 0.5111111111111111, 0.5222222222222223, 0.5388888888888889, 0.5611111111111111, 0.5722222222222222, 0.5888888888888889, 0.6055555555555555, 0.7777777777777778, 0.6833333333333333, 0.6722222222222223, 0.7, 0.7166666666666667, 0.7555555555555555, 0.7611111111111111, 0.7722222222222223, 0.7888888888888889, 0.8055555555555556, 0.8277777777777777, 0.8555555555555555, 0.8944444444444445, 0.9333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Branch_AA_trans.gap.json b/pfam_gap_rates/Branch_AA_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a20f40fa2289793d3d0b1aec74b9506e16dcc8c3
--- /dev/null
+++ b/pfam_gap_rates/Branch_AA_trans.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/C6.gap.json b/pfam_gap_rates/C6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae18c6672ded9820bc7093e8e891f272a82b3179
--- /dev/null
+++ b/pfam_gap_rates/C6.gap.json
@@ -0,0 +1 @@
+{"family": "C6", "n_seqs": 176, "length": 125, "gap_rates": [0.2897727272727273, 0.2897727272727273, 0.2784090909090909, 0.26704545454545453, 0.26704545454545453, 0.2556818181818182, 0.2556818181818182, 0.2556818181818182, 0.2556818181818182, 0.7954545454545454, 0.7329545454545454, 0.6477272727272727, 0.7102272727272727, 0.625, 0.7670454545454546, 0.9204545454545454, 0.7897727272727273, 0.7102272727272727, 0.4943181818181818, 0.3977272727272727, 0.24431818181818182, 0.16477272727272727, 0.13636363636363635, 0.125, 0.13068181818181818, 0.125, 0.3125, 0.2727272727272727, 0.26136363636363635, 0.26136363636363635, 0.29545454545454547, 0.2897727272727273, 0.3125, 0.26704545454545453, 0.22727272727272727, 0.17613636363636365, 0.9034090909090909, 0.6534090909090909, 0.022727272727272728, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.14204545454545456, 0.125, 0.11931818181818182, 0.125, 0.022727272727272728, 0.017045454545454544, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.011363636363636364, 0.10227272727272728, 0.7784090909090909, 0.8295454545454546, 0.875, 0.9375, 0.8579545454545454, 0.8238636363636364, 0.6931818181818182, 0.5681818181818182, 0.5056818181818182, 0.48295454545454547, 0.4034090909090909, 0.7272727272727273, 0.9204545454545454, 0.8181818181818182, 0.5852272727272727, 0.125, 0.2897727272727273, 0.3409090909090909, 0.8522727272727273, 0.2840909090909091, 0.25, 0.2215909090909091, 0.11931818181818182, 0.45454545454545453, 0.9090909090909091, 0.6306818181818182, 0.30113636363636365, 0.06818181818181818, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.045454545454545456, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.4943181818181818, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.7897727272727273, 0.8522727272727273, 0.875, 0.875, 0.8636363636363636, 0.7954545454545454, 0.7102272727272727, 0.5113636363636364, 0.017045454545454544, 0.028409090909090908, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.045454545454545456, 0.045454545454545456, 0.05113636363636364, 0.056818181818181816], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CABIT.gap.json b/pfam_gap_rates/CABIT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e94c116c08f0e2000f5a2463f024f010a60ca163
--- /dev/null
+++ b/pfam_gap_rates/CABIT.gap.json
@@ -0,0 +1 @@
+{"family": "CABIT", "n_seqs": 207, "length": 356, "gap_rates": [0.37681159420289856, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.2946859903381642, 0.2946859903381642, 0.2946859903381642, 0.28019323671497587, 0.2753623188405797, 0.2608695652173913, 0.25120772946859904, 0.2463768115942029, 0.2463768115942029, 0.2463768115942029, 0.357487922705314, 0.5169082125603864, 0.5603864734299517, 0.6763285024154589, 0.8115942028985508, 0.8115942028985508, 0.855072463768116, 0.855072463768116, 0.8115942028985508, 0.7777777777777778, 0.5845410628019324, 0.5555555555555556, 0.21739130434782608, 0.21256038647342995, 0.8454106280193237, 0.8647342995169082, 0.8840579710144928, 0.893719806763285, 0.8985507246376812, 0.8840579710144928, 0.8743961352657005, 0.8599033816425121, 0.8454106280193237, 0.20772946859903382, 0.1932367149758454, 0.18840579710144928, 0.18840579710144928, 0.1642512077294686, 0.15942028985507245, 0.1642512077294686, 0.1642512077294686, 0.1642512077294686, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CAMSAP_CH.gap.json b/pfam_gap_rates/CAMSAP_CH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6288a935de1f0e37cda081b8ad930d23e93d41a4
--- /dev/null
+++ b/pfam_gap_rates/CAMSAP_CH.gap.json
@@ -0,0 +1 @@
+{"family": "CAMSAP_CH", "n_seqs": 151, "length": 85, "gap_rates": [0.7019867549668874, 0.5761589403973509, 0.4370860927152318, 0.304635761589404, 0.2582781456953642, 0.2251655629139073, 0.1986754966887417, 0.152317880794702, 0.11258278145695365, 0.07947019867549669, 0.06622516556291391, 0.052980132450331126, 0.052980132450331126, 0.052980132450331126, 0.039735099337748346, 0.2980132450331126, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.046357615894039736, 0.039735099337748346, 0.052980132450331126, 0.052980132450331126, 0.052980132450331126, 0.052980132450331126, 0.046357615894039736, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.0728476821192053, 0.06622516556291391, 0.052980132450331126, 0.059602649006622516, 0.06622516556291391, 0.059602649006622516, 0.052980132450331126, 0.09271523178807947, 0.10596026490066225, 0.11920529801324503, 0.11920529801324503, 0.12582781456953643, 0.12582781456953643, 0.12582781456953643, 0.11920529801324503, 0.11920529801324503, 0.11920529801324503, 0.13245033112582782, 0.13245033112582782, 0.13245033112582782, 0.1390728476821192, 0.1456953642384106, 0.17880794701986755, 0.17218543046357615, 0.17880794701986755, 0.5033112582781457, 0.17218543046357615, 0.17880794701986755, 0.17880794701986755, 0.17880794701986755, 0.19205298013245034, 0.18543046357615894, 0.8278145695364238, 0.18543046357615894, 0.18543046357615894, 0.19205298013245034, 0.19205298013245034, 0.19205298013245034, 0.1986754966887417, 0.1986754966887417, 0.2119205298013245, 0.6556291390728477], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAS_CSE1.gap.json b/pfam_gap_rates/CAS_CSE1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2e49956d821d28ece059ff1637e4f1197bc8680
--- /dev/null
+++ b/pfam_gap_rates/CAS_CSE1.gap.json
@@ -0,0 +1 @@
+{"family": "CAS_CSE1", "n_seqs": 368, "length": 456, "gap_rates": [0.3451086956521739, 0.328804347826087, 0.3179347826086957, 0.31521739130434784, 0.31521739130434784, 0.3125, 0.3125, 0.3070652173913043, 0.31521739130434784, 0.33967391304347827, 0.41304347826086957, 0.2608695652173913, 0.9293478260869565, 0.2418478260869565, 0.2391304347826087, 0.22826086956521738, 0.22826086956521738, 0.22826086956521738, 0.22282608695652173, 0.22282608695652173, 0.22826086956521738, 0.22826086956521738, 0.22554347826086957, 0.23369565217391305, 0.22554347826086957, 0.1983695652173913, 0.19293478260869565, 0.1875, 0.18206521739130435, 0.1793478260869565, 0.1793478260869565, 0.1793478260869565, 0.1793478260869565, 0.1793478260869565, 0.1766304347826087, 0.1793478260869565, 0.1766304347826087, 0.1793478260869565, 0.18478260869565216, 0.18478260869565216, 0.1875, 0.6277173913043478, 0.6141304347826086, 0.6086956521739131, 0.5570652173913043, 0.21467391304347827, 0.16847826086956522, 0.16304347826086957, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CBM26.gap.json b/pfam_gap_rates/CBM26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1696e19f49483a2a64f874d8a7d1591812630a08
--- /dev/null
+++ b/pfam_gap_rates/CBM26.gap.json
@@ -0,0 +1 @@
+{"family": "CBM26", "n_seqs": 180, "length": 89, "gap_rates": [0.4111111111111111, 0.25, 0.21666666666666667, 0.2, 0.17777777777777778, 0.18333333333333332, 0.20555555555555555, 0.9111111111111111, 0.1388888888888889, 0.11666666666666667, 0.09444444444444444, 0.8055555555555556, 0.027777777777777776, 0.016666666666666666, 0.005555555555555556, 0.0, 0.0, 0.0, 0.005555555555555556, 0.0, 0.0, 0.0, 0.0, 0.016666666666666666, 0.022222222222222223, 0.11666666666666667, 0.1111111111111111, 0.17222222222222222, 0.48333333333333334, 0.7722222222222223, 0.9, 0.5888888888888889, 0.011111111111111112, 0.005555555555555556, 0.0, 0.0, 0.0, 0.0, 0.0, 0.75, 0.9055555555555556, 0.9277777777777778, 0.8555555555555555, 0.65, 0.0, 0.07777777777777778, 0.011111111111111112, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.0, 0.95, 0.0, 0.0, 0.0, 0.005555555555555556, 0.0, 0.0, 0.0, 0.005555555555555556, 0.6944444444444444, 0.8777777777777778, 0.9333333333333333, 0.9055555555555556, 0.7777777777777778, 0.4444444444444444, 0.13333333333333333, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.016666666666666666, 0.022222222222222223, 0.9166666666666666, 0.9388888888888889, 0.7666666666666667, 0.3277777777777778, 0.1, 0.10555555555555556, 0.11666666666666667, 0.13333333333333333, 0.16666666666666666, 0.18888888888888888, 0.2611111111111111, 0.49444444444444446, 0.9388888888888889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDC27.gap.json b/pfam_gap_rates/CDC27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..067df91c3724ab14a130fdbefd138c7f61758143
--- /dev/null
+++ b/pfam_gap_rates/CDC27.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CDC73_N.gap.json b/pfam_gap_rates/CDC73_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38f5f02694963a8032b464d372cbb183526e6ff5
--- /dev/null
+++ b/pfam_gap_rates/CDC73_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CDKN3.gap.json b/pfam_gap_rates/CDKN3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef495813e34406b5cf3c5b76ed2da8eadf38eb8e
--- /dev/null
+++ b/pfam_gap_rates/CDKN3.gap.json
@@ -0,0 +1 @@
+{"family": "CDKN3", "n_seqs": 101, "length": 168, "gap_rates": [0.9306930693069307, 0.9306930693069307, 0.8910891089108911, 0.8514851485148515, 0.8316831683168316, 0.8316831683168316, 0.8217821782178217, 0.8118811881188119, 0.801980198019802, 0.7920792079207921, 0.7920792079207921, 0.7920792079207921, 0.7920792079207921, 0.7623762376237624, 0.7722772277227723, 0.7623762376237624, 0.7425742574257426, 0.7227722772277227, 0.7128712871287128, 0.7128712871287128, 0.7029702970297029, 0.693069306930693, 0.693069306930693, 0.6732673267326733, 0.6732673267326733, 0.6732673267326733, 0.6633663366336634, 0.6534653465346535, 0.6534653465346535, 0.6435643564356436, 0.6534653465346535, 0.6435643564356436, 0.6534653465346535, 0.6534653465346535, 0.6435643564356436, 0.6534653465346535, 0.6435643564356436, 0.6138613861386139, 0.6039603960396039, 0.5841584158415841, 0.5841584158415841, 0.5841584158415841, 0.5742574257425742, 0.5742574257425742, 0.5643564356435643, 0.5742574257425742, 0.6039603960396039, 0.6237623762376238, 0.594059405940594, 0.5742574257425742, 0.5247524752475248, 0.44554455445544555, 0.39603960396039606, 0.38613861386138615, 0.37623762376237624, 0.37623762376237624, 0.37623762376237624, 0.3564356435643564, 0.32673267326732675, 0.31683168316831684, 0.2871287128712871, 0.2871287128712871, 0.27722772277227725, 0.27722772277227725, 0.26732673267326734, 0.24752475247524752, 0.24752475247524752, 0.2376237623762376, 0.2376237623762376, 0.2376237623762376, 0.22772277227722773, 0.21782178217821782, 0.19801980198019803, 0.19801980198019803, 0.19801980198019803, 0.18811881188118812, 0.18811881188118812, 0.19801980198019803, 0.18811881188118812, 0.16831683168316833, 0.15841584158415842, 0.15841584158415842, 0.16831683168316833, 0.16831683168316833, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.1485148514851485, 0.1485148514851485, 0.13861386138613863, 0.13861386138613863, 0.13861386138613863, 0.1188118811881188, 0.10891089108910891, 0.09900990099009901, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.039603960396039604, 0.0297029702970297, 0.019801980198019802, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.900990099009901, 0.8118811881188119, 0.009900990099009901, 0.8910891089108911, 0.8613861386138614, 0.009900990099009901, 0.009900990099009901, 0.039603960396039604, 0.009900990099009901, 0.019801980198019802, 0.9108910891089109, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.04950495049504951, 0.039603960396039604, 0.0297029702970297, 0.0297029702970297, 0.019801980198019802, 0.0297029702970297, 0.07920792079207921, 0.22772277227722773, 0.27722772277227725, 0.46534653465346537, 0.594059405940594, 0.6435643564356436, 0.6237623762376238, 0.6237623762376238, 0.6237623762376238, 0.6435643564356436, 0.6732673267326733, 0.7425742574257426, 0.7821782178217822], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CENP-O.gap.json b/pfam_gap_rates/CENP-O.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a07f4dbca47493db16656d62828ee658b169283e
--- /dev/null
+++ b/pfam_gap_rates/CENP-O.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CENP-T_C.gap.json b/pfam_gap_rates/CENP-T_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4dfdf11c76c87fd1c8abb7f844e8ad9e8af7ea3a
--- /dev/null
+++ b/pfam_gap_rates/CENP-T_C.gap.json
@@ -0,0 +1 @@
+{"family": "CENP-T_C", "n_seqs": 752, "length": 107, "gap_rates": [0.9281914893617021, 0.9148936170212766, 0.910904255319149, 0.9055851063829787, 0.9029255319148937, 0.8962765957446809, 0.8909574468085106, 0.8949468085106383, 0.8882978723404256, 0.875, 0.8670212765957447, 0.8617021276595744, 0.8417553191489362, 0.8351063829787234, 0.663563829787234, 0.6343085106382979, 0.3723404255319149, 0.24335106382978725, 0.2047872340425532, 0.18085106382978725, 0.18882978723404256, 0.12632978723404256, 0.11835106382978723, 0.1196808510638298, 0.10372340425531915, 0.9281914893617021, 0.05585106382978723, 0.05186170212765957, 0.0425531914893617, 0.03856382978723404, 0.03590425531914894, 0.03723404255319149, 0.034574468085106384, 0.034574468085106384, 0.031914893617021274, 0.02925531914893617, 0.02925531914893617, 0.02925531914893617, 0.027925531914893616, 0.027925531914893616, 0.023936170212765957, 0.017287234042553192, 0.010638297872340425, 0.010638297872340425, 0.006648936170212766, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.003989361702127659, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.003989361702127659, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.006648936170212766, 0.006648936170212766, 0.006648936170212766, 0.006648936170212766, 0.009308510638297872, 0.009308510638297872, 0.023936170212765957, 0.034574468085106384, 0.04521276595744681, 0.8178191489361702, 0.8789893617021277, 0.8789893617021277, 0.8803191489361702, 0.8803191489361702, 0.8816489361702128, 0.8816489361702128, 0.8816489361702128, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8829787234042553, 0.8843085106382979, 0.8843085106382979, 0.8856382978723404, 0.8896276595744681, 0.898936170212766, 0.9069148936170213, 0.925531914893617], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CENP-X.gap.json b/pfam_gap_rates/CENP-X.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13c9d9e21f0efda5748ec83f3a902eb30d329a1e
--- /dev/null
+++ b/pfam_gap_rates/CENP-X.gap.json
@@ -0,0 +1 @@
+{"family": "CENP-X", "n_seqs": 164, "length": 98, "gap_rates": [0.7378048780487805, 0.3902439024390244, 0.3231707317073171, 0.31097560975609756, 0.31097560975609756, 0.3048780487804878, 0.2865853658536585, 0.2804878048780488, 0.2804878048780488, 0.2804878048780488, 0.8963414634146342, 0.25609756097560976, 0.2621951219512195, 0.23170731707317074, 0.16463414634146342, 0.9451219512195121, 0.17073170731707318, 0.14634146341463414, 0.08536585365853659, 0.06707317073170732, 0.042682926829268296, 0.018292682926829267, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.0, 0.0, 0.018292682926829267, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.0, 0.0, 0.04878048780487805, 0.006097560975609756, 0.006097560975609756, 0.012195121951219513, 0.024390243902439025, 0.03048780487804878, 0.1951219512195122, 0.18902439024390244, 0.18292682926829268, 0.7195121951219512, 0.7012195121951219, 0.7012195121951219, 0.7073170731707317, 0.6402439024390244, 0.7439024390243902, 0.8170731707317073, 0.8536585365853658, 0.8841463414634146, 0.9146341463414634, 0.9207317073170732, 0.926829268292683, 0.9329268292682927, 0.9329268292682927, 0.9390243902439024, 0.9451219512195121, 0.9329268292682927, 0.9329268292682927, 0.926829268292683, 0.926829268292683, 0.9146341463414634, 0.9024390243902439, 0.8719512195121951, 0.8170731707317073, 0.7804878048780488, 0.7195121951219512, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.06707317073170732, 0.06707317073170732, 0.06707317073170732, 0.06707317073170732, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07926829268292683, 0.07926829268292683, 0.10365853658536585, 0.12804878048780488, 0.12804878048780488, 0.15853658536585366], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CG-1.gap.json b/pfam_gap_rates/CG-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1067b6a565e6b8f06cc6885a216e1d9227ac89c7
--- /dev/null
+++ b/pfam_gap_rates/CG-1.gap.json
@@ -0,0 +1 @@
+{"family": "CG-1", "n_seqs": 261, "length": 117, "gap_rates": [0.5593869731800766, 0.32950191570881227, 0.26053639846743293, 0.23371647509578544, 0.2260536398467433, 0.2260536398467433, 0.2260536398467433, 0.2222222222222222, 0.20689655172413793, 0.1839080459770115, 0.18007662835249041, 0.17624521072796934, 0.17624521072796934, 0.17624521072796934, 0.1685823754789272, 0.1685823754789272, 0.1685823754789272, 0.17624521072796934, 0.18007662835249041, 0.17624521072796934, 0.17624521072796934, 0.7203065134099617, 0.7203065134099617, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1685823754789272, 0.16475095785440613, 0.1532567049808429, 0.14559386973180077, 0.12643678160919541, 0.1111111111111111, 0.10344827586206896, 0.10344827586206896, 0.09961685823754789, 0.08045977011494253, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06513409961685823, 0.07279693486590039, 0.06896551724137931, 0.06513409961685823, 0.06130268199233716, 0.06130268199233716, 0.07662835249042145, 0.22988505747126436, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.05747126436781609, 0.06130268199233716, 0.05747126436781609, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06513409961685823, 0.06130268199233716, 0.05363984674329502, 0.04980842911877394, 0.04980842911877394, 0.04980842911877394, 0.04597701149425287, 0.04980842911877394, 0.038314176245210725, 0.034482758620689655, 0.0421455938697318, 0.04980842911877394, 0.04980842911877394, 0.05747126436781609, 0.04980842911877394, 0.06513409961685823, 0.06130268199233716, 0.06130268199233716, 0.06513409961685823, 0.06513409961685823, 0.07279693486590039, 0.07279693486590039, 0.07662835249042145, 0.08045977011494253, 0.08045977011494253, 0.09578544061302682, 0.0842911877394636, 0.0842911877394636, 0.0842911877394636, 0.0842911877394636, 0.10727969348659004, 0.0842911877394636, 0.0842911877394636, 0.08812260536398467, 0.08812260536398467, 0.08812260536398467, 0.08812260536398467, 0.08812260536398467, 0.10344827586206896, 0.11877394636015326, 0.3946360153256705, 0.3524904214559387, 0.14942528735632185, 0.14942528735632185, 0.14942528735632185, 0.14942528735632185, 0.1532567049808429, 0.1532567049808429, 0.1532567049808429, 0.15708812260536398, 0.1685823754789272, 0.8160919540229885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CH.gap.json b/pfam_gap_rates/CH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0126a77de13b5d51eae6c0c48b898f37c1c459b0
--- /dev/null
+++ b/pfam_gap_rates/CH.gap.json
@@ -0,0 +1 @@
+{"family": "CH", "n_seqs": 5000, "length": 132, "gap_rates": [0.7116, 0.419, 0.2746, 0.198, 0.1526, 0.1298, 0.1246, 0.1228, 0.1218, 0.118, 0.1144, 0.114, 0.1372, 0.1116, 0.1968, 0.2088, 0.3346, 0.5478, 0.147, 0.1244, 0.1314, 0.2116, 0.1788, 0.8738, 0.9022, 0.9234, 0.9388, 0.912, 0.8938, 0.8594, 0.108, 0.0992, 0.0946, 0.0928, 0.9326, 0.0316, 0.0292, 0.0282, 0.0276, 0.0272, 0.0268, 0.0256, 0.0246, 0.0238, 0.0238, 0.023, 0.0194, 0.018, 0.0176, 0.017, 0.0182, 0.9454, 0.9324, 0.0196, 0.0324, 0.0348, 0.032, 0.085, 0.0458, 0.0398, 0.0404, 0.04, 0.04, 0.2936, 0.2814, 0.0656, 0.5678, 0.7776, 0.8448, 0.908, 0.94, 0.937, 0.877, 0.8324, 0.6346, 0.4716, 0.0224, 0.021, 0.0194, 0.0196, 0.0184, 0.0182, 0.018, 0.0178, 0.019, 0.0458, 0.022, 0.0214, 0.0216, 0.058, 0.0254, 0.0258, 0.6488, 0.028, 0.029, 0.0294, 0.0282, 0.0296, 0.0304, 0.0444, 0.0614, 0.4708, 0.7958, 0.0466, 0.0412, 0.0422, 0.046, 0.0476, 0.0504, 0.0522, 0.764, 0.867, 0.7472, 0.0576, 0.0636, 0.0664, 0.0648, 0.789, 0.0694, 0.0704, 0.072, 0.0738, 0.0758, 0.0788, 0.09, 0.099, 0.1046, 0.1234, 0.171, 0.2504, 0.4412, 0.618], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHAD.gap.json b/pfam_gap_rates/CHAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f36f1b7810a9190abc0a564a5a0067c5f009c479
--- /dev/null
+++ b/pfam_gap_rates/CHAD.gap.json
@@ -0,0 +1 @@
+{"family": "CHAD", "n_seqs": 598, "length": 282, "gap_rates": [0.8578595317725752, 0.5434782608695652, 0.41638795986622074, 0.33612040133779264, 0.2842809364548495, 0.26421404682274247, 0.2508361204013378, 0.225752508361204, 0.21070234113712374, 0.19899665551839466, 0.19732441471571907, 0.19230769230769232, 0.18729096989966554, 0.17892976588628762, 0.1939799331103679, 0.18394648829431437, 0.1605351170568562, 0.14214046822742474, 0.9214046822742475, 0.10702341137123746, 0.09531772575250837, 0.26421404682274247, 0.06020066889632107, 0.046822742474916385, 0.04180602006688963, 0.04013377926421405, 0.04180602006688963, 0.04013377926421405, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.03678929765886288, 0.03678929765886288, 0.03511705685618729, 0.033444816053511704, 0.028428093645484948, 0.026755852842809364, 0.028428093645484948, 0.028428093645484948, 0.026755852842809364, 0.026755852842809364, 0.026755852842809364, 0.028428093645484948, 0.1488294314381271, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CHDCT2.gap.json b/pfam_gap_rates/CHDCT2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f847997014559b92910dfe4629077d6cefe42cb9
--- /dev/null
+++ b/pfam_gap_rates/CHDCT2.gap.json
@@ -0,0 +1 @@
+{"family": "CHDCT2", "n_seqs": 145, "length": 172, "gap_rates": [0.7310344827586207, 0.2689655172413793, 0.19310344827586207, 0.1724137931034483, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.07586206896551724, 0.07586206896551724, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.08275862068965517, 0.0896551724137931, 0.10344827586206896, 0.14482758620689656, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.18620689655172415, 0.18620689655172415, 0.2, 0.2, 0.21379310344827587, 0.1793103448275862, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.16551724137931034, 0.16551724137931034, 0.1793103448275862, 0.19310344827586207, 0.19310344827586207, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.2, 0.2, 0.2413793103448276, 0.20689655172413793, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.2206896551724138, 0.2206896551724138, 0.2206896551724138, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.20689655172413793, 0.2206896551724138, 0.2206896551724138, 0.2413793103448276, 0.2413793103448276, 0.22758620689655173, 0.22758620689655173, 0.2, 0.19310344827586207, 0.2, 0.2, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.20689655172413793, 0.20689655172413793, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.2, 0.2, 0.2, 0.2, 0.20689655172413793, 0.20689655172413793, 0.2, 0.20689655172413793, 0.22758620689655173, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.2413793103448276, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2620689655172414, 0.2620689655172414, 0.2620689655172414, 0.2689655172413793, 0.2689655172413793], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHS5_N.gap.json b/pfam_gap_rates/CHS5_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..364379ad305ec7b77be9aaf391e9ebd3575614ec
--- /dev/null
+++ b/pfam_gap_rates/CHS5_N.gap.json
@@ -0,0 +1 @@
+{"family": "CHS5_N", "n_seqs": 124, "length": 48, "gap_rates": [0.8467741935483871, 0.0967741935483871, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.06451612903225806, 0.056451612903225805, 0.056451612903225805, 0.04838709677419355, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.016129032258064516, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CLPTM1.gap.json b/pfam_gap_rates/CLPTM1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9bc79f2300c8fdd3becd48615f791e573c11436
--- /dev/null
+++ b/pfam_gap_rates/CLPTM1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CLU.gap.json b/pfam_gap_rates/CLU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29f9d77bcbafa0903ca3c6317a013c702e0b2d29
--- /dev/null
+++ b/pfam_gap_rates/CLU.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CMD.gap.json b/pfam_gap_rates/CMD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b2771c24832d60e22b17814b3bbbb72205fa7f6
--- /dev/null
+++ b/pfam_gap_rates/CMD.gap.json
@@ -0,0 +1 @@
+{"family": "CMD", "n_seqs": 4485, "length": 87, "gap_rates": [0.5531772575250836, 0.4579710144927536, 0.34225195094760313, 0.29208472686733555, 0.23232998885172798, 0.19777034559643256, 0.1750278706800446, 0.15674470457079154, 0.1366778149386845, 0.12508361204013377, 0.10992196209587514, 0.09342251950947603, 0.08294314381270904, 0.07179487179487179, 0.08338907469342252, 0.1681159420289855, 0.6831661092530658, 0.5083612040133779, 0.07892976588628763, 0.02608695652173913, 0.23455964325529544, 0.014938684503901895, 0.01137123745819398, 0.009587513935340023, 0.009141583054626532, 0.008695652173913044, 0.007357859531772575, 0.006465997770345597, 0.004905239687848384, 0.0046822742474916385, 0.00423634336677815, 0.004013377926421404, 0.0035674470457079154, 0.002898550724637681, 0.0026755852842809363, 0.0026755852842809363, 0.0026755852842809363, 0.002229654403567447, 0.002229654403567447, 0.0026755852842809363, 0.0026755852842809363, 0.002898550724637681, 0.030546265328874025, 0.005797101449275362, 0.8958751393534002, 0.005797101449275362, 0.004459308807134894, 0.004459308807134894, 0.005128205128205128, 0.005351170568561873, 0.0069119286510590855, 0.01560758082497213, 0.013377926421404682, 0.02073578595317726, 0.03277591973244147, 0.03411371237458194, 0.03745819397993311, 0.038573021181716835, 0.04080267558528428, 0.04548494983277592, 0.05105908584169454, 0.05284280936454849, 0.054403567447045706, 0.07224080267558529, 0.06911928651059086, 0.07692307692307693, 0.0858416945373467, 0.09988851727982163, 0.10903010033444815, 0.11482720178372352, 0.12107023411371237, 0.13043478260869565, 0.14136008918617615, 0.14938684503901895, 0.16833890746934224, 0.16878483835005575, 0.17435897435897435, 0.18372352285395763, 0.20022296544035675, 0.21560758082497214, 0.23500557413600892, 0.25908584169453736, 0.29253065774804904, 0.3337792642140468, 0.39933110367892977, 0.49899665551839467, 0.8118171683389075], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CNDH2_C.gap.json b/pfam_gap_rates/CNDH2_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f263a8987b034c0d02d1f352561d270a0db1ceac
--- /dev/null
+++ b/pfam_gap_rates/CNDH2_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COBRA.gap.json b/pfam_gap_rates/COBRA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17cbbce17809e2c85d372a237cd24f90e78a15e9
--- /dev/null
+++ b/pfam_gap_rates/COBRA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COR.gap.json b/pfam_gap_rates/COR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63938e49e519bf8a62f1b664fbf129f1ed12d9e6
--- /dev/null
+++ b/pfam_gap_rates/COR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COX7C.gap.json b/pfam_gap_rates/COX7C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5a03dfcaf92cfda2e664d66de5f0c9948c63a47
--- /dev/null
+++ b/pfam_gap_rates/COX7C.gap.json
@@ -0,0 +1 @@
+{"family": "COX7C", "n_seqs": 202, "length": 75, "gap_rates": [0.8465346534653465, 0.6732673267326733, 0.5247524752475248, 0.40594059405940597, 0.31683168316831684, 0.26732673267326734, 0.9356435643564357, 0.18811881188118812, 0.18811881188118812, 0.18316831683168316, 0.16336633663366337, 0.16831683168316833, 0.19801980198019803, 0.1782178217821782, 0.3316831683168317, 0.5148514851485149, 0.8663366336633663, 0.9108910891089109, 0.8910891089108911, 0.8217821782178217, 0.42574257425742573, 0.12376237623762376, 0.07425742574257425, 0.06435643564356436, 0.0594059405940594, 0.054455445544554455, 0.034653465346534656, 0.034653465346534656, 0.09405940594059406, 0.0891089108910891, 0.7772277227722773, 0.0891089108910891, 0.034653465346534656, 0.024752475247524754, 0.009900990099009901, 0.0049504950495049506, 0.0, 0.0, 0.8910891089108911, 0.9455445544554455, 0.7970297029702971, 0.29207920792079206, 0.27722772277227725, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.7128712871287128, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0049504950495049506, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.06435643564356436, 0.0891089108910891, 0.09900990099009901, 0.1188118811881188, 0.17326732673267325, 0.25742574257425743], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COXG.gap.json b/pfam_gap_rates/COXG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6844ca38eade95180560447828b97a602f28bfb7
--- /dev/null
+++ b/pfam_gap_rates/COXG.gap.json
@@ -0,0 +1 @@
+{"family": "COXG", "n_seqs": 429, "length": 145, "gap_rates": [0.6130536130536131, 0.38461538461538464, 0.2540792540792541, 0.18414918414918416, 0.1048951048951049, 0.0675990675990676, 0.055944055944055944, 0.04195804195804196, 0.039627039627039624, 0.037296037296037296, 0.037296037296037296, 0.037296037296037296, 0.03496503496503497, 0.03496503496503497, 0.030303030303030304, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.023310023310023312, 0.023310023310023312, 0.023310023310023312, 0.023310023310023312, 0.018648018648018648, 0.018648018648018648, 0.016317016317016316, 0.016317016317016316, 0.018648018648018648, 0.016317016317016316, 0.013986013986013986, 0.016317016317016316, 0.013986013986013986, 0.027972027972027972, 0.023310023310023312, 0.011655011655011656, 0.011655011655011656, 0.24475524475524477, 0.013986013986013986, 0.016317016317016316, 0.016317016317016316, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.011655011655011656, 0.011655011655011656, 0.013986013986013986, 0.011655011655011656, 0.011655011655011656, 0.011655011655011656, 0.011655011655011656, 0.011655011655011656, 0.016317016317016316, 0.013986013986013986, 0.016317016317016316, 0.013986013986013986, 0.009324009324009324, 0.009324009324009324, 0.011655011655011656, 0.011655011655011656, 0.009324009324009324, 0.009324009324009324, 0.011655011655011656, 0.009324009324009324, 0.006993006993006993, 0.009324009324009324, 0.013986013986013986, 0.006993006993006993, 0.006993006993006993, 0.03496503496503497, 0.08158508158508158, 0.1445221445221445, 0.8414918414918415, 0.04428904428904429, 0.027972027972027972, 0.009324009324009324, 0.009324009324009324, 0.011655011655011656, 0.013986013986013986, 0.9393939393939394, 0.016317016317016316, 0.02097902097902098, 0.03263403263403263, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.016317016317016316, 0.02097902097902098, 0.02097902097902098, 0.018648018648018648, 0.018648018648018648, 0.02097902097902098, 0.018648018648018648, 0.0675990675990676, 0.037296037296037296, 0.06293706293706294, 0.03496503496503497, 0.027972027972027972, 0.9463869463869464, 0.5617715617715617, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.016317016317016316, 0.016317016317016316, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.018648018648018648, 0.016317016317016316, 0.016317016317016316, 0.018648018648018648, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02564102564102564, 0.018648018648018648, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.02097902097902098, 0.02097902097902098, 0.02564102564102564, 0.027972027972027972, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.037296037296037296, 0.06293706293706294, 0.11655011655011654, 0.19114219114219114, 0.36363636363636365, 0.916083916083916], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CO_deh_flav_C.gap.json b/pfam_gap_rates/CO_deh_flav_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9066ebe526a9d29624ecc80e1543f95e55f76bf8
--- /dev/null
+++ b/pfam_gap_rates/CO_deh_flav_C.gap.json
@@ -0,0 +1 @@
+{"family": "CO_deh_flav_C", "n_seqs": 2095, "length": 110, "gap_rates": [0.8205250596658711, 0.2821002386634845, 0.12267303102625299, 0.45632458233890216, 0.08591885441527446, 0.06491646778042959, 0.058233890214797135, 0.05441527446300716, 0.0477326968973747, 0.04725536992840095, 0.04630071599045346, 0.18711217183770884, 0.04152744630071599, 0.03818615751789976, 0.037231503579952266, 0.03579952267303103, 0.037231503579952266, 0.037708830548926014, 0.03484486873508353, 0.04486873508353222, 0.03341288782816229, 0.032458233890214794, 0.037231503579952266, 0.03293556085918854, 0.03389021479713604, 0.04725536992840095, 0.06968973747016706, 0.079236276849642, 0.5498806682577566, 0.9174224343675418, 0.9336515513126492, 0.7642004773269689, 0.156563245823389, 0.1412887828162291, 0.1269689737470167, 0.0782816229116945, 0.029116945107398567, 0.02100238663484487, 0.02052505966587112, 0.01766109785202864, 0.016229116945107397, 0.016706443914081145, 0.015274463007159905, 0.015751789976133652, 0.015274463007159905, 0.015751789976133652, 0.014319809069212411, 0.9374701670644391, 0.013842482100238664, 0.014797136038186158, 0.017183770883054894, 0.014319809069212411, 0.018615751789976133, 0.02052505966587112, 0.02052505966587112, 0.018138424821002388, 0.02100238663484487, 0.018615751789976133, 0.019570405727923627, 0.028639618138424822, 0.03436754176610979, 0.06873508353221958, 0.052028639618138424, 0.04964200477326969, 0.0477326968973747, 0.03532219570405728, 0.8682577565632458, 0.03293556085918854, 0.026252983293556086, 0.02673031026252983, 0.02720763723150358, 0.025775656324582338, 0.026252983293556086, 0.028162291169451074, 0.032458233890214794, 0.03436754176610979, 0.04200477326968974, 0.039618138424821, 0.04105011933174224, 0.043914081145584725, 0.04677804295942721, 0.04964200477326969, 0.05632458233890215, 0.06587112171837708, 0.06778042959427208, 0.07064439140811456, 0.7852028639618138, 0.24916467780429594, 0.18329355608591885, 0.1794749403341289, 0.17517899761336517, 0.07064439140811456, 0.07064439140811456, 0.07064439140811456, 0.0730310262529833, 0.07398568019093078, 0.0730310262529833, 0.07541766109785203, 0.07684964200477327, 0.07732696897374702, 0.08305489260143198, 0.08448687350835322, 0.08878281622911695, 0.0973747016706444, 0.10930787589498807, 0.12410501193317422, 0.14749403341288783, 0.2233890214797136, 0.4014319809069212, 0.8644391408114559], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CPL.gap.json b/pfam_gap_rates/CPL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9908f6badac4b76d1265dbc24b0e8fa0438ff651
--- /dev/null
+++ b/pfam_gap_rates/CPL.gap.json
@@ -0,0 +1 @@
+{"family": "CPL", "n_seqs": 278, "length": 172, "gap_rates": [0.8093525179856115, 0.4172661870503597, 0.30935251798561153, 0.23741007194244604, 0.1906474820143885, 0.1906474820143885, 0.1906474820143885, 0.18705035971223022, 0.18345323741007194, 0.18345323741007194, 0.18345323741007194, 0.18345323741007194, 0.18345323741007194, 0.18345323741007194, 0.17985611510791366, 0.17625899280575538, 0.17266187050359713, 0.17266187050359713, 0.1618705035971223, 0.1618705035971223, 0.15827338129496402, 0.15827338129496402, 0.15467625899280577, 0.15827338129496402, 0.15467625899280577, 0.8525179856115108, 0.8525179856115108, 0.802158273381295, 0.15467625899280577, 0.15827338129496402, 0.15467625899280577, 0.15467625899280577, 0.15827338129496402, 0.15467625899280577, 0.15467625899280577, 0.15467625899280577, 0.1223021582733813, 0.10071942446043165, 0.09352517985611511, 0.4676258992805755, 0.4352517985611511, 0.920863309352518, 0.07194244604316546, 0.046762589928057555, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.9424460431654677, 0.9424460431654677, 0.025179856115107913, 0.025179856115107913, 0.9388489208633094, 0.9388489208633094, 0.025179856115107913, 0.025179856115107913, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.025179856115107913, 0.025179856115107913, 0.025179856115107913, 0.02877697841726619, 0.02877697841726619, 0.03237410071942446, 0.03237410071942446, 0.03597122302158273, 0.03597122302158273, 0.039568345323741004, 0.03597122302158273, 0.03597122302158273, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.04316546762589928, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.05755395683453238, 0.05755395683453238, 0.06474820143884892, 0.08633093525179857, 0.08992805755395683, 0.06474820143884892, 0.6870503597122302, 0.7302158273381295, 0.7985611510791367, 0.841726618705036, 0.8812949640287769, 0.9100719424460432, 0.8489208633093526, 0.8129496402877698, 0.7949640287769785, 0.7230215827338129, 0.6115107913669064, 0.07553956834532374, 0.07913669064748201, 0.07194244604316546, 0.08273381294964029, 0.07553956834532374, 0.0683453237410072, 0.0683453237410072, 0.0683453237410072, 0.0683453237410072, 0.0683453237410072, 0.0683453237410072, 0.0683453237410072, 0.07194244604316546, 0.4244604316546763, 0.39928057553956836, 0.34532374100719426, 0.3273381294964029, 0.37050359712230213, 0.7841726618705036, 0.8165467625899281, 0.8812949640287769, 0.9316546762589928, 0.9496402877697842, 0.9316546762589928, 0.89568345323741, 0.8525179856115108, 0.7985611510791367, 0.7302158273381295, 0.13309352517985612, 0.12949640287769784, 0.12949640287769784, 0.12589928057553956, 0.12589928057553956, 0.11870503597122302, 0.11870503597122302, 0.12949640287769784, 0.11870503597122302, 0.11151079136690648, 0.11510791366906475, 0.11870503597122302, 0.11870503597122302, 0.11870503597122302, 0.11870503597122302, 0.11870503597122302, 0.11870503597122302, 0.1223021582733813, 0.12589928057553956, 0.12589928057553956, 0.13309352517985612, 0.21223021582733814, 0.2446043165467626, 0.26618705035971224, 0.6906474820143885, 0.6726618705035972, 0.34532374100719426, 0.381294964028777, 0.42805755395683454, 0.49280575539568344, 0.5719424460431655, 0.7661870503597122, 0.9244604316546763], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CPSF100_C.gap.json b/pfam_gap_rates/CPSF100_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a58104c3b9295c089b3e0fe2ff5fc4588af3966
--- /dev/null
+++ b/pfam_gap_rates/CPSF100_C.gap.json
@@ -0,0 +1 @@
+{"family": "CPSF100_C", "n_seqs": 293, "length": 223, "gap_rates": [0.5085324232081911, 0.4061433447098976, 0.3856655290102389, 0.3822525597269625, 0.3822525597269625, 0.3822525597269625, 0.3822525597269625, 0.3822525597269625, 0.3822525597269625, 0.3822525597269625, 0.3822525597269625, 0.3822525597269625, 0.3822525597269625, 0.3822525597269625, 0.3720136518771331, 0.36860068259385664, 0.3651877133105802, 0.3651877133105802, 0.9112627986348123, 0.3651877133105802, 0.3651877133105802, 0.3651877133105802, 0.3651877133105802, 0.3651877133105802, 0.3651877133105802, 0.3651877133105802, 0.36177474402730375, 0.36177474402730375, 0.36177474402730375, 0.36177474402730375, 0.5392491467576792, 0.6040955631399317, 0.6416382252559727, 0.7303754266211604, 0.856655290102389, 0.8668941979522184, 0.89419795221843, 0.9010238907849829, 0.9488054607508533, 0.8976109215017065, 0.8907849829351536, 0.8600682593856656, 0.8464163822525598, 0.7337883959044369, 0.757679180887372, 0.7406143344709898, 0.7440273037542662, 0.7098976109215017, 0.6757679180887372, 0.6382252559726962, 0.5836177474402731, 0.5426621160409556, 0.47440273037542663, 0.4232081911262799, 0.3993174061433447, 0.39590443686006827, 0.378839590443686, 0.3720136518771331, 0.37542662116040953, 0.39590443686006827, 0.3993174061433447, 0.3822525597269625, 0.3993174061433447, 0.39590443686006827, 0.40955631399317405, 0.41638225255972694, 0.46075085324232085, 0.49829351535836175, 0.5290102389078498, 0.5290102389078498, 0.5255972696245734, 0.5255972696245734, 0.5085324232081911, 0.8873720136518771, 0.9283276450511946, 0.9419795221843004, 0.9419795221843004, 0.9078498293515358, 0.8703071672354948, 0.726962457337884, 0.6348122866894198, 0.5938566552901023, 0.5767918088737202, 0.5494880546075085, 0.5358361774744027, 0.5119453924914675, 0.49146757679180886, 0.45051194539249145, 0.4300341296928328, 0.39590443686006827, 0.3720136518771331, 0.34812286689419797, 0.3310580204778157, 0.3242320819112628, 0.3037542662116041, 0.29692832764505117, 0.27986348122866894, 0.27303754266211605, 0.26621160409556316, 0.23890784982935154, 0.20819112627986347, 0.17747440273037543, 0.15358361774744028, 0.15017064846416384, 0.13993174061433447, 0.11604095563139932, 0.11945392491467577, 0.11604095563139932, 0.12627986348122866, 0.13310580204778158, 0.15358361774744028, 0.7201365187713311, 0.6621160409556314, 0.6313993174061433, 0.45051194539249145, 0.9385665529010239, 0.14675767918088736, 0.11945392491467577, 0.07167235494880546, 0.06484641638225255, 0.03754266211604096, 0.034129692832764506, 0.034129692832764506, 0.023890784982935155, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.023890784982935155, 0.017064846416382253, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.020477815699658702, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.013651877133105802, 0.4948805460750853, 0.017064846416382253, 0.017064846416382253, 0.017064846416382253, 0.017064846416382253, 0.017064846416382253, 0.017064846416382253, 0.863481228668942, 0.8668941979522184, 0.8805460750853242, 0.8805460750853242, 0.9112627986348123, 0.9351535836177475, 0.9419795221843004, 0.9249146757679181, 0.8976109215017065, 0.8805460750853242, 0.8771331058020477, 0.863481228668942, 0.863481228668942, 0.023890784982935155, 0.8600682593856656, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.030716723549488054, 0.030716723549488054, 0.03754266211604096, 0.030716723549488054, 0.034129692832764506, 0.030716723549488054, 0.8464163822525598, 0.8737201365187713, 0.8907849829351536, 0.8907849829351536, 0.9453924914675768, 0.9112627986348123, 0.8907849829351536, 0.8805460750853242, 0.8600682593856656, 0.8156996587030717, 0.04778156996587031, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04778156996587031, 0.04778156996587031, 0.04778156996587031, 0.04778156996587031, 0.7815699658703071, 0.7952218430034129, 0.8020477815699659, 0.8532423208191127, 0.8771331058020477, 0.9419795221843004, 0.9112627986348123, 0.856655290102389, 0.8430034129692833, 0.7952218430034129, 0.7918088737201365, 0.7815699658703071, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04436860068259386, 0.04778156996587031, 0.051194539249146756, 0.051194539249146756, 0.051194539249146756, 0.051194539249146756, 0.051194539249146756, 0.06484641638225255, 0.19112627986348124, 0.2593856655290102], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRAL_TRIO_N.gap.json b/pfam_gap_rates/CRAL_TRIO_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39e2ffd1185a1dbd599c1ece39cfe3f272c53257
--- /dev/null
+++ b/pfam_gap_rates/CRAL_TRIO_N.gap.json
@@ -0,0 +1 @@
+{"family": "CRAL_TRIO_N", "n_seqs": 1517, "length": 74, "gap_rates": [0.8879367172050099, 0.7930125247198417, 0.7224785761371127, 0.6961107448912327, 0.6710613052076466, 0.6631509558338826, 0.6532630191166776, 0.6460118655240606, 0.6341463414634146, 0.6235992089650626, 0.6222808174027686, 0.6209624258404747, 0.6163480553724456, 0.6143704680290046, 0.5754779169413315, 0.8457481872116018, 0.8609096901779829, 0.8681608437705999, 0.8773895847066578, 0.9103493737640079, 0.928806855636124, 0.9499011206328279, 0.918918918918919, 0.8938694792353329, 0.8727752142386289, 0.8642056690837179, 0.8536585365853658, 0.8424522083058669, 0.8187211601845749, 0.6506262359920897, 0.6242584047462096, 0.6038233355306526, 0.6011865524060646, 0.5873434410019776, 0.5702043506921556, 0.5596572181938035, 0.7593935398813447, 0.5266974291364536, 0.4950560316413975, 0.46605141727092947, 0.3704680290046144, 0.7989452867501649, 0.8905735003295979, 0.9057350032959789, 0.8457481872116018, 0.7897165458141068, 0.36255767963085034, 0.2880685563612393, 0.21753460777851022, 0.1964403427818062, 0.16282135794330915, 0.7883981542518128, 0.004614370468029005, 0.0006591957811470006, 0.0006591957811470006, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006591957811470006, 0.0006591957811470006, 0.001977587343441002, 0.001977587343441002, 0.001977587343441002, 0.0032959789057350032, 0.0032959789057350032, 0.0065919578114700065, 0.015820698747528016, 0.03493737640079104, 0.13183915622940012, 0.5247198417930126], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRISPR_Cse1.gap.json b/pfam_gap_rates/CRISPR_Cse1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5fc4226eb9d44be1de1b5d1f73479c9eae06c09f
--- /dev/null
+++ b/pfam_gap_rates/CRISPR_Cse1.gap.json
@@ -0,0 +1 @@
+{"family": "CRISPR_Cse1", "n_seqs": 196, "length": 645, "gap_rates": [0.23979591836734693, 0.1377551020408163, 0.1377551020408163, 0.12755102040816327, 0.11734693877551021, 0.11224489795918367, 0.10714285714285714, 0.09183673469387756, 0.09183673469387756, 0.09183673469387756, 0.09183673469387756, 0.08673469387755102, 0.08673469387755102, 0.8673469387755102, 0.2193877551020408, 0.10204081632653061, 0.11734693877551021, 0.9336734693877551, 0.14285714285714285, 0.12755102040816327, 0.10714285714285714, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.15306122448979592, 0.25510204081632654, 0.8826530612244898, 0.8622448979591837, 0.07653061224489796, 0.07653061224489796, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.1377551020408163, 0.0663265306122449, 0.0663265306122449, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CSTF_C.gap.json b/pfam_gap_rates/CSTF_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1639e3cba70d8d1e4c1542691394615effe885fb
--- /dev/null
+++ b/pfam_gap_rates/CSTF_C.gap.json
@@ -0,0 +1 @@
+{"family": "CSTF_C", "n_seqs": 310, "length": 41, "gap_rates": [0.8387096774193549, 0.5838709677419355, 0.432258064516129, 0.34838709677419355, 0.2870967741935484, 0.13225806451612904, 0.07096774193548387, 0.02258064516129032, 0.012903225806451613, 0.012903225806451613, 0.0032258064516129032, 0.0032258064516129032, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0032258064516129032, 0.0032258064516129032, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.03870967741935484, 0.054838709677419356, 0.12580645161290321, 0.2161290322580645, 0.3870967741935484, 0.5096774193548387, 0.7645161290322581], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CTK3_C.gap.json b/pfam_gap_rates/CTK3_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d01cc24a341c8a66bc9c88ba63c6436f57531bdc
--- /dev/null
+++ b/pfam_gap_rates/CTK3_C.gap.json
@@ -0,0 +1 @@
+{"family": "CTK3_C", "n_seqs": 127, "length": 129, "gap_rates": [0.3464566929133858, 0.11811023622047244, 0.05511811023622047, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.047244094488188976, 0.8740157480314961, 0.9133858267716536, 0.8031496062992126, 0.6850393700787402, 0.7480314960629921, 0.6614173228346457, 0.6535433070866141, 0.5984251968503937, 0.41732283464566927, 0.7480314960629921, 0.7480314960629921, 0.7559055118110236, 0.7637795275590551, 0.7637795275590551, 0.7795275590551181, 0.7874015748031497, 0.7874015748031497, 0.7874015748031497, 0.8110236220472441, 0.8503937007874016, 0.889763779527559, 0.8976377952755905, 0.905511811023622, 0.9133858267716536, 0.9212598425196851, 0.9212598425196851, 0.9291338582677166, 0.9291338582677166, 0.9291338582677166, 0.9291338582677166, 0.9291338582677166, 0.937007874015748, 0.937007874015748, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.937007874015748, 0.937007874015748, 0.937007874015748, 0.9291338582677166, 0.9291338582677166, 0.9291338582677166, 0.9291338582677166, 0.9212598425196851, 0.9212598425196851, 0.9133858267716536, 0.9133858267716536, 0.8976377952755905, 0.8976377952755905, 0.8661417322834646, 0.8267716535433071, 0.7874015748031497, 0.7874015748031497, 0.7874015748031497, 0.7795275590551181, 0.7795275590551181, 0.7637795275590551, 0.7637795275590551, 0.7480314960629921, 0.7480314960629921, 0.7480314960629921, 0.07874015748031496, 0.07086614173228346, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.07874015748031496, 0.09448818897637795, 0.09448818897637795, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.08661417322834646, 0.10236220472440945, 0.10236220472440945, 0.11811023622047244, 0.13385826771653545, 0.15748031496062992, 0.1889763779527559, 0.2204724409448819, 0.25984251968503935, 0.4645669291338583, 0.5433070866141733, 0.7007874015748031], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CTP_synth_N.gap.json b/pfam_gap_rates/CTP_synth_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..782e79194708506feebc6062c916b04986c88611
--- /dev/null
+++ b/pfam_gap_rates/CTP_synth_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CTP_transf_like.gap.json b/pfam_gap_rates/CTP_transf_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10c86c5aa02ef6e0baa23db0ff4bc718ffdc07e3
--- /dev/null
+++ b/pfam_gap_rates/CTP_transf_like.gap.json
@@ -0,0 +1 @@
+{"family": "CTP_transf_like", "n_seqs": 5000, "length": 201, "gap_rates": [0.3622, 0.0916, 0.0558, 0.0492, 0.0424, 0.0396, 0.0326, 0.029, 0.0284, 0.0264, 0.0254, 0.0232, 0.023, 0.0222, 0.0216, 0.0206, 0.0196, 0.0194, 0.0174, 0.0176, 0.0172, 0.0174, 0.0174, 0.017, 0.016, 0.0264, 0.5934, 0.9302, 0.9464, 0.8418, 0.0328, 0.0198, 0.0196, 0.027, 0.02, 0.0168, 0.0188, 0.0188, 0.017, 0.0174, 0.0158, 0.0208, 0.2224, 0.2454, 0.8962, 0.3994, 0.7764, 0.8676, 0.6236, 0.2738, 0.0452, 0.029, 0.0166, 0.0156, 0.0154, 0.015, 0.0152, 0.0148, 0.0156, 0.0156, 0.014, 0.0138, 0.0152, 0.0162, 0.0166, 0.702, 0.0426, 0.039, 0.0302, 0.0316, 0.036, 0.1026, 0.053, 0.0476, 0.0424, 0.044, 0.0454, 0.046, 0.0464, 0.0464, 0.047, 0.0962, 0.5972, 0.6274, 0.6566, 0.7084, 0.7448, 0.9272, 0.9388, 0.9498, 0.9434, 0.9342, 0.8542, 0.727, 0.6772, 0.6474, 0.6078, 0.582, 0.1382, 0.0706, 0.0658, 0.0626, 0.0632, 0.0626, 0.0838, 0.0688, 0.0574, 0.9142, 0.933, 0.7168, 0.6792, 0.6642, 0.0554, 0.0526, 0.053, 0.0528, 0.055, 0.0576, 0.0698, 0.0836, 0.122, 0.1334, 0.1512, 0.2238, 0.5946, 0.591, 0.3418, 0.3294, 0.929, 0.941, 0.943, 0.9366, 0.9256, 0.2226, 0.2166, 0.2038, 0.2036, 0.2054, 0.2102, 0.2058, 0.2152, 0.215, 0.2164, 0.2166, 0.2184, 0.2204, 0.2232, 0.3964, 0.4068, 0.4188, 0.689, 0.699, 0.7234, 0.764, 0.783, 0.8, 0.83, 0.8854, 0.9176, 0.9242, 0.9294, 0.934, 0.9388, 0.9356, 0.9318, 0.9262, 0.922, 0.9072, 0.8444, 0.8194, 0.7912, 0.7762, 0.7322, 0.7142, 0.6926, 0.6864, 0.6608, 0.6832, 0.6732, 0.6384, 0.6054, 0.4398, 0.4372, 0.2988, 0.2876, 0.282, 0.305, 0.2778, 0.266, 0.2654, 0.2876, 0.2656, 0.264, 0.262, 0.2624, 0.2646, 0.2694, 0.275, 0.2932, 0.421, 0.8342], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CTU2.gap.json b/pfam_gap_rates/CTU2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef6b345dbfff096f27673a798b99533e35ab9c71
--- /dev/null
+++ b/pfam_gap_rates/CTU2.gap.json
@@ -0,0 +1 @@
+{"family": "CTU2", "n_seqs": 209, "length": 161, "gap_rates": [0.1674641148325359, 0.023923444976076555, 0.009569377990430622, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9234449760765551, 0.004784688995215311, 0.004784688995215311, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.03349282296650718, 0.24880382775119617, 0.631578947368421, 0.7033492822966507, 0.7464114832535885, 0.7464114832535885, 0.8181818181818182, 0.8325358851674641, 0.8421052631578947, 0.861244019138756, 0.861244019138756, 0.8755980861244019, 0.8851674641148325, 0.8995215311004785, 0.9043062200956937, 0.9043062200956937, 0.9234449760765551, 0.9473684210526315, 0.9234449760765551, 0.9090909090909091, 0.9043062200956937, 0.9043062200956937, 0.8899521531100478, 0.8851674641148325, 0.861244019138756, 0.861244019138756, 0.8516746411483254, 0.8373205741626795, 0.8325358851674641, 0.8181818181818182, 0.69377990430622, 0.44976076555023925, 0.07655502392344497, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.014354066985645933, 0.023923444976076555, 0.023923444976076555, 0.8181818181818182, 0.22966507177033493, 0.12440191387559808, 0.14354066985645933, 0.1291866028708134, 0.15789473684210525, 0.16267942583732056, 0.19138755980861244, 0.20574162679425836, 0.22488038277511962, 0.23444976076555024, 0.22966507177033493, 0.2535885167464115, 0.2631578947368421, 0.2583732057416268, 0.2631578947368421, 0.2822966507177033, 0.28708133971291866, 0.3349282296650718, 0.3349282296650718, 0.3397129186602871, 0.3397129186602871, 0.3397129186602871, 0.3492822966507177, 0.3588516746411483, 0.4880382775119617, 0.5406698564593302, 0.5167464114832536, 0.5119617224880383, 0.5119617224880383, 0.5263157894736842, 0.5598086124401914, 0.6028708133971292, 0.6124401913875598, 0.6028708133971292, 0.5933014354066986, 0.5885167464114832, 0.5741626794258373, 0.5789473684210527, 0.5741626794258373, 0.5645933014354066, 0.5454545454545454, 0.5119617224880383, 0.5167464114832536, 0.5119617224880383, 0.5550239234449761, 0.6076555023923444, 0.6555023923444976, 0.5550239234449761, 0.7320574162679426, 0.7559808612440191, 0.7942583732057417, 0.8133971291866029, 0.8277511961722488, 0.8325358851674641, 0.8564593301435407, 0.8851674641148325, 0.9090909090909091, 0.9282296650717703, 0.937799043062201, 0.9473684210526315, 0.9330143540669856, 0.9090909090909091, 0.8851674641148325, 0.8708133971291866, 0.8421052631578947, 0.8277511961722488, 0.8277511961722488, 0.8038277511961722, 0.7799043062200957, 0.7416267942583732, 0.7177033492822966, 0.4880382775119617, 0.430622009569378, 0.39712918660287083, 0.39712918660287083, 0.39712918660287083, 0.39712918660287083, 0.39712918660287083, 0.41626794258373206, 0.8133971291866029], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CVNH.gap.json b/pfam_gap_rates/CVNH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4ef7a034aad660371a82df080720869ae3f1425
--- /dev/null
+++ b/pfam_gap_rates/CVNH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Caa3_CtaG.gap.json b/pfam_gap_rates/Caa3_CtaG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11a2f1e2e155c8dff530071fa2e52fa37e8324d3
--- /dev/null
+++ b/pfam_gap_rates/Caa3_CtaG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CactinC_cactus.gap.json b/pfam_gap_rates/CactinC_cactus.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a119a1ca22ff13586bd2e9da883abb3c2acbefa
--- /dev/null
+++ b/pfam_gap_rates/CactinC_cactus.gap.json
@@ -0,0 +1 @@
+{"family": "CactinC_cactus", "n_seqs": 315, "length": 138, "gap_rates": [0.16825396825396827, 0.1523809523809524, 0.13333333333333333, 0.12380952380952381, 0.10476190476190476, 0.06984126984126984, 0.05714285714285714, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.044444444444444446, 0.044444444444444446, 0.04126984126984127, 0.0380952380952381, 0.03492063492063492, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.02857142857142857, 0.025396825396825397, 0.025396825396825397, 0.025396825396825397, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.01904761904761905, 0.01904761904761905, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.01904761904761905, 0.015873015873015872, 0.01904761904761905, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.01904761904761905, 0.01904761904761905, 0.015873015873015872, 0.015873015873015872, 0.022222222222222223, 0.022222222222222223, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.022222222222222223, 0.03492063492063492, 0.06666666666666667, 0.02857142857142857, 0.02857142857142857, 0.025396825396825397, 0.025396825396825397, 0.025396825396825397, 0.025396825396825397, 0.025396825396825397, 0.025396825396825397, 0.025396825396825397, 0.18412698412698414, 0.7492063492063492, 0.7619047619047619, 0.7714285714285715, 0.7777777777777778, 0.7904761904761904, 0.7936507936507936, 0.7777777777777778, 0.7746031746031746, 0.7619047619047619, 0.7587301587301587, 0.7365079365079366, 0.031746031746031744, 0.0380952380952381, 0.03492063492063492, 0.04126984126984127, 0.0380952380952381, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.0380952380952381, 0.044444444444444446, 0.0380952380952381, 0.0380952380952381, 0.044444444444444446, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.050793650793650794, 0.05396825396825397, 0.05396825396825397, 0.05396825396825397, 0.05396825396825397, 0.05396825396825397, 0.05396825396825397, 0.05396825396825397, 0.05396825396825397, 0.05714285714285714, 0.06031746031746032, 0.06031746031746032, 0.08253968253968254, 0.780952380952381, 0.780952380952381, 0.06031746031746032, 0.06031746031746032, 0.06349206349206349, 0.06349206349206349, 0.06666666666666667, 0.06666666666666667, 0.06984126984126984, 0.06984126984126984, 0.07301587301587302, 0.09523809523809523, 0.10158730158730159, 0.11746031746031746, 0.11746031746031746, 0.11746031746031746, 0.12380952380952381, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.13015873015873017, 0.1365079365079365, 0.14603174603174604, 0.17142857142857143, 0.17777777777777778, 0.17777777777777778, 0.1873015873015873], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CagE_TrbE_VirB.gap.json b/pfam_gap_rates/CagE_TrbE_VirB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..138ffab3eb8e12cabcae98a64527754a53f70706
--- /dev/null
+++ b/pfam_gap_rates/CagE_TrbE_VirB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Calpain_III.gap.json b/pfam_gap_rates/Calpain_III.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be56f725dc688e69867f4bd77e6e20c00508ecb7
--- /dev/null
+++ b/pfam_gap_rates/Calpain_III.gap.json
@@ -0,0 +1 @@
+{"family": "Calpain_III", "n_seqs": 884, "length": 165, "gap_rates": [0.30995475113122173, 0.20701357466063347, 0.17647058823529413, 0.4457013574660634, 0.20588235294117646, 0.17307692307692307, 0.14819004524886878, 0.9457013574660633, 0.9479638009049773, 0.9468325791855203, 0.9264705882352942, 0.14027149321266968, 0.1346153846153846, 0.13122171945701358, 0.12217194570135746, 0.12217194570135746, 0.12217194570135746, 0.24434389140271492, 0.2579185520361991, 0.18212669683257918, 0.10294117647058823, 0.09615384615384616, 0.08597285067873303, 0.08257918552036199, 0.07692307692307693, 0.07352941176470588, 0.06561085972850679, 0.06334841628959276, 0.05995475113122172, 0.05995475113122172, 0.058823529411764705, 0.05656108597285068, 0.05656108597285068, 0.05542986425339366, 0.057692307692307696, 0.8812217194570136, 0.580316742081448, 0.6821266968325792, 0.6719457013574661, 0.6300904977375565, 0.6063348416289592, 0.5690045248868778, 0.5158371040723982, 0.9264705882352942, 0.9445701357466063, 0.9389140271493213, 0.9230769230769231, 0.41402714932126694, 0.32918552036199095, 0.09954751131221719, 0.06108597285067873, 0.049773755656108594, 0.048642533936651584, 0.04638009049773756, 0.04638009049773756, 0.04638009049773756, 0.05090497737556561, 0.049773755656108594, 0.04638009049773756, 0.23529411764705882, 0.915158371040724, 0.9298642533936652, 0.9389140271493213, 0.9400452488687783, 0.9423076923076923, 0.9400452488687783, 0.9343891402714932, 0.9242081447963801, 0.9140271493212669, 0.248868778280543, 0.27601809954751133, 0.2669683257918552, 0.21380090497737556, 0.36877828054298645, 0.3404977375565611, 0.27149321266968324, 0.21945701357466063, 0.19570135746606335, 0.11425339366515837, 0.9015837104072398, 0.07805429864253394, 0.09049773755656108, 0.06108597285067873, 0.048642533936651584, 0.048642533936651584, 0.048642533936651584, 0.04411764705882353, 0.04411764705882353, 0.04751131221719457, 0.049773755656108594, 0.05203619909502263, 0.43778280542986425, 0.6617647058823529, 0.8846153846153846, 0.8382352941176471, 0.6493212669683258, 0.4592760180995475, 0.25565610859728505, 0.18099547511312217, 0.12330316742081449, 0.10067873303167421, 0.08710407239819004, 0.083710407239819, 0.0757918552036199, 0.08484162895927602, 0.08710407239819004, 0.10180995475113122, 0.14819004524886878, 0.20248868778280543, 0.16968325791855204, 0.15271493212669685, 0.14027149321266968, 0.2160633484162896, 0.2839366515837104, 0.20927601809954752, 0.1436651583710407, 0.11764705882352941, 0.07692307692307693, 0.06334841628959276, 0.058823529411764705, 0.058823529411764705, 0.057692307692307696, 0.06108597285067873, 0.05656108597285068, 0.06108597285067873, 0.05203619909502263, 0.04638009049773756, 0.04751131221719457, 0.05090497737556561, 0.083710407239819, 0.06221719457013575, 0.9377828054298643, 0.05090497737556561, 0.049773755656108594, 0.048642533936651584, 0.048642533936651584, 0.917420814479638, 0.9038461538461539, 0.048642533936651584, 0.04751131221719457, 0.04751131221719457, 0.04751131221719457, 0.048642533936651584, 0.048642533936651584, 0.048642533936651584, 0.049773755656108594, 0.05203619909502263, 0.06334841628959276, 0.06561085972850679, 0.05995475113122172, 0.057692307692307696, 0.057692307692307696, 0.06221719457013575, 0.05995475113122172, 0.06334841628959276, 0.06561085972850679, 0.0667420814479638, 0.06787330316742081, 0.08484162895927602, 0.10294117647058823, 0.19230769230769232, 0.21832579185520362, 0.27941176470588236, 0.40497737556561086, 0.6368778280542986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Caps_assemb_Wzi.gap.json b/pfam_gap_rates/Caps_assemb_Wzi.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26302bc4fc8b13b5d08c4f6c1dbfbb0fd1a3e4ef
--- /dev/null
+++ b/pfam_gap_rates/Caps_assemb_Wzi.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CarS-like.gap.json b/pfam_gap_rates/CarS-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2be5b84314cef91e49488ab519a89e3c8639ed08
--- /dev/null
+++ b/pfam_gap_rates/CarS-like.gap.json
@@ -0,0 +1 @@
+{"family": "CarS-like", "n_seqs": 147, "length": 198, "gap_rates": [0.891156462585034, 0.8095238095238095, 0.7210884353741497, 0.6530612244897959, 0.564625850340136, 0.47619047619047616, 0.4557823129251701, 0.4489795918367347, 0.43537414965986393, 0.4217687074829932, 0.41496598639455784, 0.3197278911564626, 0.3197278911564626, 0.3197278911564626, 0.32653061224489793, 0.3197278911564626, 0.3197278911564626, 0.3197278911564626, 0.3197278911564626, 0.30612244897959184, 0.30612244897959184, 0.30612244897959184, 0.29931972789115646, 0.2925170068027211, 0.2857142857142857, 0.2789115646258503, 0.9319727891156463, 0.2789115646258503, 0.9387755102040817, 0.9455782312925171, 0.9319727891156463, 0.23809523809523808, 0.1836734693877551, 0.1836734693877551, 0.1836734693877551, 0.19727891156462585, 0.20408163265306123, 0.19727891156462585, 0.20408163265306123, 0.19727891156462585, 0.19727891156462585, 0.3129251700680272, 0.20408163265306123, 0.23129251700680273, 0.17687074829931973, 0.17006802721088435, 0.16326530612244897, 0.16326530612244897, 0.1564625850340136, 0.14965986394557823, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14965986394557823, 0.14965986394557823, 0.14965986394557823, 0.14965986394557823, 0.14965986394557823, 0.14965986394557823, 0.14965986394557823, 0.14965986394557823, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14965986394557823, 0.14965986394557823, 0.1564625850340136, 0.1564625850340136, 0.17006802721088435, 0.17006802721088435, 0.19047619047619047, 0.2108843537414966, 0.22448979591836735, 0.23809523809523808, 0.46938775510204084, 0.4557823129251701, 0.4217687074829932, 0.42857142857142855, 0.4421768707482993, 0.9183673469387755, 0.9455782312925171, 0.8299319727891157, 0.43537414965986393, 0.40816326530612246, 0.4013605442176871, 0.38095238095238093, 0.36054421768707484, 0.3469387755102041, 0.3197278911564626, 0.30612244897959184, 0.3401360544217687, 0.3197278911564626, 0.3673469387755102, 0.29931972789115646, 0.23809523809523808, 0.24489795918367346, 0.19047619047619047, 0.1292517006802721, 0.11564625850340136, 0.10884353741496598, 0.10884353741496598, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.9251700680272109, 0.9251700680272109, 0.9319727891156463, 0.9319727891156463, 0.9319727891156463, 0.9251700680272109, 0.9251700680272109, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08163265306122448, 0.08163265306122448, 0.08843537414965986, 0.08843537414965986, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.8979591836734694, 0.9047619047619048, 0.891156462585034, 0.08163265306122448, 0.08843537414965986, 0.7006802721088435, 0.8027210884353742, 0.8503401360544217, 0.8435374149659864, 0.7414965986394558, 0.673469387755102, 0.08843537414965986, 0.09523809523809523, 0.09523809523809523, 0.10204081632653061, 0.09523809523809523, 0.09523809523809523, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10884353741496598, 0.10204081632653061, 0.10884353741496598, 0.10884353741496598, 0.10204081632653061, 0.10884353741496598, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.1292517006802721, 0.1292517006802721, 0.1292517006802721, 0.1292517006802721, 0.1360544217687075, 0.1360544217687075, 0.1564625850340136, 0.22448979591836735, 0.29931972789115646, 0.3469387755102041, 0.3877551020408163], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Caveolin.gap.json b/pfam_gap_rates/Caveolin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec022afbd4baca9847b781c56ac15f84802890e0
--- /dev/null
+++ b/pfam_gap_rates/Caveolin.gap.json
@@ -0,0 +1 @@
+{"family": "Caveolin", "n_seqs": 170, "length": 132, "gap_rates": [0.6941176470588235, 0.6705882352941176, 0.5882352941176471, 0.5647058823529412, 0.5, 0.3588235294117647, 0.3235294117647059, 0.2823529411764706, 0.23529411764705882, 0.1588235294117647, 0.13529411764705881, 0.12941176470588237, 0.12352941176470589, 0.11764705882352941, 0.11764705882352941, 0.10588235294117647, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.08235294117647059, 0.7294117647058823, 0.06470588235294118, 0.03529411764705882, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.023529411764705882, 0.023529411764705882, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.0058823529411764705, 0.0058823529411764705, 0.029411764705882353, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.011764705882352941, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.01764705882352941, 0.01764705882352941, 0.023529411764705882, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.03529411764705882, 0.03529411764705882, 0.041176470588235294, 0.047058823529411764, 0.052941176470588235, 0.06470588235294118, 0.06470588235294118, 0.07058823529411765, 0.07647058823529412, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07647058823529412, 0.07647058823529412, 0.07647058823529412, 0.07647058823529412, 0.07647058823529412, 0.09411764705882353, 0.10588235294117647, 0.10588235294117647, 0.11176470588235295, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.1411764705882353, 0.2529411764705882, 0.3176470588235294, 0.5529411764705883], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CbiC.gap.json b/pfam_gap_rates/CbiC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cf83c8c18984bb08c056580066fd1f33ccae524
--- /dev/null
+++ b/pfam_gap_rates/CbiC.gap.json
@@ -0,0 +1 @@
+{"family": "CbiC", "n_seqs": 822, "length": 206, "gap_rates": [0.5145985401459854, 0.10340632603406326, 0.0948905109489051, 0.05961070559610705, 0.049878345498783457, 0.04744525547445255, 0.0413625304136253, 0.0413625304136253, 0.040145985401459854, 0.040145985401459854, 0.038929440389294405, 0.038929440389294405, 0.037712895377128956, 0.037712895377128956, 0.03527980535279805, 0.05474452554744526, 0.04866180048661801, 0.08150851581508516, 0.8917274939172749, 0.8722627737226277, 0.0681265206812652, 0.0535279805352798, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.024330900243309004, 0.024330900243309004, 0.024330900243309004, 0.024330900243309004, 0.024330900243309004, 0.024330900243309004, 0.024330900243309004, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.023114355231143552, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.024330900243309004, 0.024330900243309004, 0.023114355231143552, 0.021897810218978103, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.023114355231143552, 0.021897810218978103, 0.021897810218978103, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.02068126520681265, 0.02068126520681265, 0.0267639902676399, 0.030413625304136254, 0.0340632603406326, 0.051094890510948905, 0.057177615571776155, 0.058394160583941604, 0.06204379562043796, 0.4051094890510949, 0.09367396593673966, 0.07664233576642336, 0.03527980535279805, 0.027980535279805353, 0.025547445255474453, 0.024330900243309004, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.024330900243309004, 0.10583941605839416, 0.11678832116788321, 0.10218978102189781, 0.10218978102189781, 0.06204379562043796, 0.052311435523114354, 0.045012165450121655, 0.03527980535279805, 0.024330900243309004, 0.024330900243309004, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.021897810218978103, 0.02068126520681265, 0.02068126520681265, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.02068126520681265, 0.02068126520681265, 0.021897810218978103, 0.9233576642335767, 0.8978102189781022, 0.0340632603406326, 0.0535279805352798, 0.0340632603406326, 0.023114355231143552, 0.02068126520681265, 0.02068126520681265, 0.02068126520681265, 0.02068126520681265, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.023114355231143552, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.024330900243309004, 0.032846715328467155, 0.030413625304136254, 0.030413625304136254, 0.032846715328467155, 0.06082725060827251, 0.9476885644768857, 0.04866180048661801, 0.025547445255474453, 0.021897810218978103, 0.024330900243309004, 0.021897810218978103, 0.02068126520681265, 0.02068126520681265, 0.01824817518248175, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.02068126520681265, 0.019464720194647202, 0.019464720194647202, 0.02068126520681265, 0.021897810218978103, 0.019464720194647202, 0.02068126520681265, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.9172749391727494, 0.021897810218978103, 0.019464720194647202, 0.7530413625304136, 0.9233576642335767, 0.9184914841849149, 0.5693430656934306, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.019464720194647202, 0.02068126520681265, 0.02068126520681265, 0.02068126520681265, 0.02068126520681265, 0.02068126520681265, 0.02068126520681265, 0.021897810218978103, 0.021897810218978103, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.023114355231143552, 0.024330900243309004, 0.024330900243309004, 0.024330900243309004, 0.025547445255474453, 0.057177615571776155, 0.2384428223844282, 0.8832116788321168], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CbiD.gap.json b/pfam_gap_rates/CbiD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..469f00b7cad208dedd61974c5f53b7f2291e1fe7
--- /dev/null
+++ b/pfam_gap_rates/CbiD.gap.json
@@ -0,0 +1 @@
+{"family": "CbiD", "n_seqs": 603, "length": 281, "gap_rates": [0.2835820895522388, 0.07296849087893864, 0.04643449419568822, 0.04477611940298507, 0.04477611940298507, 0.04311774461028192, 0.04311774461028192, 0.04145936981757877, 0.04145936981757877, 0.04145936981757877, 0.04145936981757877, 0.04145936981757877, 0.04145936981757877, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03316749585406302, 0.03150912106135987, 0.087893864013267, 0.06965174129353234, 0.03482587064676617, 0.03814262023217247, 0.03316749585406302, 0.03150912106135987, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.028192371475953566, 0.028192371475953566, 0.028192371475953566, 0.03150912106135987, 0.028192371475953566, 0.028192371475953566, 0.0978441127694859, 0.03150912106135987, 0.028192371475953566, 0.028192371475953566, 0.028192371475953566, 0.028192371475953566, 0.029850746268656716, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CbiX.gap.json b/pfam_gap_rates/CbiX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b599c3fa3ab2766adea9aa8fe7063f1d7be0dd47
--- /dev/null
+++ b/pfam_gap_rates/CbiX.gap.json
@@ -0,0 +1 @@
+{"family": "CbiX", "n_seqs": 1522, "length": 116, "gap_rates": [0.21419185282522996, 0.08869908015768725, 0.08607095926412615, 0.08278580814717477, 0.07621550591327202, 0.07095926412614981, 0.0683311432325887, 0.06504599211563732, 0.06176084099868594, 0.06110381077529566, 0.05781865965834428, 0.05519053876478318, 0.0519053876478318, 0.049277266754270695, 0.047963206307490146, 0.04730617608409987, 0.04664914586070959, 0.04533508541392904, 0.04533508541392904, 0.04336399474375821, 0.04204993429697766, 0.06176084099868594, 0.05913272010512484, 0.05847568988173456, 0.9349540078843627, 0.27726675427069647, 0.08081471747700394, 0.05519053876478318, 0.04862023653088042, 0.04533508541392904, 0.03416557161629435, 0.026938239159001315, 0.025624178712220762, 0.04204993429697766, 0.02102496714848883, 0.051248357424441525, 0.011826544021024968, 0.007227332457293035, 0.006570302233902759, 0.006570302233902759, 0.005913272010512484, 0.006570302233902759, 0.005256241787122208, 0.010512483574244415, 0.007227332457293035, 0.0164257555847569, 0.0164257555847569, 0.02890932982917214, 0.17411300919842312, 0.12943495400788435, 0.10512483574244415, 0.9336399474375822, 0.04993429697766097, 0.017739816031537452, 0.010512483574244415, 0.005256241787122208, 0.007227332457293035, 0.002628120893561104, 0.0032851511169513796, 0.0019710906701708277, 0.0019710906701708277, 0.0019710906701708277, 0.0032851511169513796, 0.0032851511169513796, 0.0032851511169513796, 0.0032851511169513796, 0.0032851511169513796, 0.0032851511169513796, 0.0045992115637319315, 0.008541392904073587, 0.0164257555847569, 0.020367936925098553, 0.34296977660972405, 0.08869908015768725, 0.08607095926412615, 0.08541392904073587, 0.08081471747700394, 0.05584756898817345, 0.05716162943495401, 0.06110381077529566, 0.08278580814717477, 0.09395532194480946, 0.0873850197109067, 0.09067017082785808, 0.09461235216819974, 0.10446780551905388, 0.9211563731931669, 0.9257555847568988, 0.9375821287779238, 0.9388961892247043, 0.9296977660972404, 0.9218134034165572, 0.9113009198423128, 0.8777923784494087, 0.33771353482260186, 0.2792378449408673, 0.2161629434954008, 0.17017082785808146, 0.1287779237844941, 0.09789750328515112, 0.08278580814717477, 0.0821287779237845, 0.08278580814717477, 0.08344283837056504, 0.08475689881734559, 0.0873850197109067, 0.09395532194480946, 0.10249671484888305, 0.10643889618922471, 0.10972404730617609, 0.11498028909329829, 0.12549277266754272, 0.1360052562417871, 0.19513797634691196, 0.40932982917214195, 0.9487516425755584], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cbl_N.gap.json b/pfam_gap_rates/Cbl_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5cbd35356e55e991520461a10fb63eec1ec52c97
--- /dev/null
+++ b/pfam_gap_rates/Cbl_N.gap.json
@@ -0,0 +1 @@
+{"family": "Cbl_N", "n_seqs": 126, "length": 129, "gap_rates": [0.753968253968254, 0.25396825396825395, 0.21428571428571427, 0.21428571428571427, 0.20634920634920634, 0.20634920634920634, 0.20634920634920634, 0.20634920634920634, 0.20634920634920634, 0.20634920634920634, 0.20634920634920634, 0.1984126984126984, 0.16666666666666666, 0.15873015873015872, 0.1349206349206349, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.14285714285714285, 0.1349206349206349, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10317460317460317, 0.10317460317460317, 0.10317460317460317, 0.10317460317460317, 0.10317460317460317, 0.10317460317460317, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.10317460317460317, 0.10317460317460317, 0.10317460317460317, 0.1984126984126984, 0.30158730158730157, 0.30158730158730157, 0.8412698412698413, 0.8412698412698413, 0.20634920634920634, 0.10317460317460317, 0.0873015873015873, 0.0873015873015873, 0.9444444444444444, 0.9444444444444444, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07142857142857142, 0.07142857142857142, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.07142857142857142, 0.07142857142857142, 0.07936507936507936, 0.0873015873015873, 0.10317460317460317, 0.09523809523809523, 0.06349206349206349, 0.07142857142857142, 0.07142857142857142, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05555555555555555, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07936507936507936, 0.09523809523809523, 0.5793650793650794], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CcdB.gap.json b/pfam_gap_rates/CcdB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ac807a68c8812346ab007e6daa9df8ba6046a35
--- /dev/null
+++ b/pfam_gap_rates/CcdB.gap.json
@@ -0,0 +1 @@
+{"family": "CcdB", "n_seqs": 100, "length": 105, "gap_rates": [0.19, 0.16, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.71, 0.58, 0.47, 0.41, 0.36, 0.23, 0.09, 0.07, 0.06, 0.06, 0.06, 0.05, 0.04, 0.04, 0.03, 0.02, 0.02, 0.05, 0.03, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.03, 0.07, 0.09, 0.88, 0.67, 0.15, 0.04, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.95, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.02, 0.04, 0.94, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.03, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.05, 0.15, 0.24], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CcmD.gap.json b/pfam_gap_rates/CcmD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66fc8ad0fc9633f05e64e27366b5bcc7507c5bf2
--- /dev/null
+++ b/pfam_gap_rates/CcmD.gap.json
@@ -0,0 +1 @@
+{"family": "CcmD", "n_seqs": 328, "length": 44, "gap_rates": [0.21646341463414634, 0.09451219512195122, 0.039634146341463415, 0.021341463414634148, 0.012195121951219513, 0.003048780487804878, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003048780487804878, 0.003048780487804878, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.012195121951219513, 0.012195121951219513, 0.01524390243902439, 0.01524390243902439, 0.018292682926829267, 0.027439024390243903, 0.03048780487804878, 0.039634146341463415, 0.057926829268292686, 0.0701219512195122, 0.12804878048780488, 0.1798780487804878, 0.25914634146341464, 0.32621951219512196, 0.43597560975609756, 0.7774390243902439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CcmH.gap.json b/pfam_gap_rates/CcmH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fea0ebf4094f458e54af1eb0ee116f1f40780463
--- /dev/null
+++ b/pfam_gap_rates/CcmH.gap.json
@@ -0,0 +1 @@
+{"family": "CcmH", "n_seqs": 580, "length": 151, "gap_rates": [0.6637931034482759, 0.5189655172413793, 0.42586206896551726, 0.3931034482758621, 0.3586206896551724, 0.3431034482758621, 0.33448275862068966, 0.31551724137931036, 0.3, 0.28793103448275864, 0.9258620689655173, 0.25689655172413794, 0.24655172413793103, 0.23448275862068965, 0.9396551724137931, 0.20689655172413793, 0.19482758620689655, 0.17758620689655172, 0.16551724137931034, 0.15517241379310345, 0.1413793103448276, 0.11724137931034483, 0.1, 0.09310344827586207, 0.07931034482758621, 0.06551724137931035, 0.05862068965517241, 0.04310344827586207, 0.039655172413793106, 0.034482758620689655, 0.03103448275862069, 0.027586206896551724, 0.02413793103448276, 0.022413793103448276, 0.022413793103448276, 0.022413793103448276, 0.022413793103448276, 0.020689655172413793, 0.01896551724137931, 0.01896551724137931, 0.020689655172413793, 0.01896551724137931, 0.020689655172413793, 0.01896551724137931, 0.020689655172413793, 0.01896551724137931, 0.01896551724137931, 0.01896551724137931, 0.01896551724137931, 0.017241379310344827, 0.01896551724137931, 0.01896551724137931, 0.01896551724137931, 0.01896551724137931, 0.01896551724137931, 0.01896551724137931, 0.01896551724137931, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.010344827586206896, 0.010344827586206896, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.008620689655172414, 0.006896551724137931, 0.006896551724137931, 0.005172413793103448, 0.005172413793103448, 0.005172413793103448, 0.008620689655172414, 0.006896551724137931, 0.01206896551724138, 0.010344827586206896, 0.008620689655172414, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.01206896551724138, 0.01896551724137931, 0.01896551724137931, 0.020689655172413793, 0.01896551724137931, 0.022413793103448276, 0.022413793103448276, 0.020689655172413793, 0.020689655172413793, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.020689655172413793, 0.01896551724137931, 0.01896551724137931, 0.01896551724137931, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.02413793103448276, 0.02413793103448276, 0.02586206896551724, 0.02586206896551724, 0.03793103448275862, 0.04655172413793104, 0.05344827586206897, 0.06724137931034482, 0.07241379310344828, 0.08275862068965517, 0.14655172413793102, 0.17758620689655172, 0.1879310344827586, 0.20172413793103447, 0.2637931034482759, 0.3448275862068966, 0.2672413793103448, 0.7241379310344828, 0.8672413793103448, 0.9017241379310345, 0.9224137931034483, 0.9137931034482759, 0.8862068965517241, 0.8258620689655173, 0.6431034482758621, 0.2827586206896552, 0.3103448275862069, 0.3137931034482759, 0.31724137931034485, 0.32413793103448274, 0.34655172413793106, 0.3706896551724138, 0.38275862068965516, 0.3896551724137931, 0.4086206896551724, 0.42931034482758623, 0.4603448275862069, 0.5793103448275863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ceramidase_alk.gap.json b/pfam_gap_rates/Ceramidase_alk.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acace69d587d246f422bc277d639c2dc416126ca
--- /dev/null
+++ b/pfam_gap_rates/Ceramidase_alk.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Chal_sti_synt_C.gap.json b/pfam_gap_rates/Chal_sti_synt_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18cc45795031e0e1e59a7d570affc33286c87567
--- /dev/null
+++ b/pfam_gap_rates/Chal_sti_synt_C.gap.json
@@ -0,0 +1 @@
+{"family": "Chal_sti_synt_C", "n_seqs": 902, "length": 155, "gap_rates": [0.655210643015521, 0.6031042128603105, 0.5753880266075388, 0.5509977827050998, 0.49445676274944567, 0.46895787139689576, 0.42017738359201773, 0.32926829268292684, 0.26053215077605324, 0.229490022172949, 0.21840354767184036, 0.20509977827050999, 0.18625277161862527, 0.18403547671840353, 0.17516629711751663, 0.16851441241685144, 0.17073170731707318, 0.16518847006651885, 0.16186252771618626, 0.16186252771618626, 0.15631929046563192, 0.15631929046563192, 0.15521064301552107, 0.15188470066518847, 0.14966740576496673, 0.14301552106430154, 0.1352549889135255, 0.13303769401330376, 0.13082039911308205, 0.12749445676274945, 0.12749445676274945, 0.12638580931263857, 0.12749445676274945, 0.12749445676274945, 0.12638580931263857, 0.12638580931263857, 0.12749445676274945, 0.1286031042128603, 0.12749445676274945, 0.1419068736141907, 0.13082039911308205, 0.12527716186252771, 0.12305986696230599, 0.12305986696230599, 0.12305986696230599, 0.12305986696230599, 0.12527716186252771, 0.12084257206208426, 0.12195121951219512, 0.12638580931263857, 0.12749445676274945, 0.13414634146341464, 0.1385809312638581, 0.1286031042128603, 0.12971175166297116, 0.1385809312638581, 0.8270509977827051, 0.9246119733924612, 0.9035476718403548, 0.7527716186252772, 0.12084257206208426, 0.12084257206208426, 0.1197339246119734, 0.14634146341463414, 0.1662971175166297, 0.1197339246119734, 0.06097560975609756, 0.03991130820399113, 0.037694013303769404, 0.036585365853658534, 0.036585365853658534, 0.038802660753880266, 0.037694013303769404, 0.037694013303769404, 0.037694013303769404, 0.036585365853658534, 0.03547671840354767, 0.03547671840354767, 0.03436807095343681, 0.02993348115299335, 0.028824833702882482, 0.03325942350332594, 0.03215077605321508, 0.03215077605321508, 0.031042128603104215, 0.031042128603104215, 0.02993348115299335, 0.02993348115299335, 0.02993348115299335, 0.031042128603104215, 0.031042128603104215, 0.03325942350332594, 0.031042128603104215, 0.02771618625277162, 0.02771618625277162, 0.02771618625277162, 0.028824833702882482, 0.02993348115299335, 0.028824833702882482, 0.02771618625277162, 0.02771618625277162, 0.02771618625277162, 0.02771618625277162, 0.025498891352549888, 0.025498891352549888, 0.024390243902439025, 0.025498891352549888, 0.026607538802660754, 0.031042128603104215, 0.038802660753880266, 0.04767184035476718, 0.04767184035476718, 0.043237250554323724, 0.04767184035476718, 0.050997782705099776, 0.0598669623059867, 0.05543237250554324, 0.058758314855875834, 0.48558758314855877, 0.3968957871396896, 0.3869179600886918, 0.360310421286031, 0.2771618625277162, 0.22062084257206208, 0.22172949002217296, 0.24168514412416853, 0.25609756097560976, 0.28713968957871394, 0.5587583148558758, 0.5099778270509978, 0.4401330376940133, 0.3237250554323725, 0.17849223946784923, 0.1352549889135255, 0.12527716186252771, 0.11197339246119734, 0.1008869179600887, 0.0975609756097561, 0.0975609756097561, 0.0975609756097561, 0.0975609756097561, 0.09866962305986696, 0.1008869179600887, 0.10421286031042129, 0.10975609756097561, 0.11862527716186252, 0.12638580931263857, 0.13414634146341464, 0.15077605321507762, 0.18403547671840353, 0.1951219512195122, 0.28824833702882485, 0.5620842572062085, 0.6940133037694013, 0.8758314855875832], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CheR.gap.json b/pfam_gap_rates/CheR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f265182658a4a27023688859dd27263ca9b04fed
--- /dev/null
+++ b/pfam_gap_rates/CheR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CheW.gap.json b/pfam_gap_rates/CheW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7230a9c9860e52886ab37bfecd8426019fab1ee6
--- /dev/null
+++ b/pfam_gap_rates/CheW.gap.json
@@ -0,0 +1 @@
+{"family": "CheW", "n_seqs": 5000, "length": 156, "gap_rates": [0.6612, 0.229, 0.111, 0.0832, 0.071, 0.0652, 0.0588, 0.0556, 0.0446, 0.0404, 0.0292, 0.904, 0.0246, 0.0236, 0.0224, 0.0218, 0.0212, 0.0206, 0.0196, 0.0192, 0.0178, 0.0174, 0.017, 0.017, 0.017, 0.017, 0.936, 0.9266, 0.0172, 0.0208, 0.3212, 0.0362, 0.0302, 0.0228, 0.0196, 0.0182, 0.0172, 0.018, 0.0208, 0.0216, 0.3602, 0.3104, 0.0286, 0.0194, 0.0136, 0.0132, 0.013, 0.012, 0.0112, 0.0114, 0.0114, 0.0112, 0.0108, 0.0106, 0.01, 0.0098, 0.01, 0.0104, 0.0112, 0.011, 0.0114, 0.0108, 0.011, 0.0114, 0.0112, 0.0112, 0.012, 0.0574, 0.7634, 0.8852, 0.929, 0.9422, 0.9482, 0.937, 0.915, 0.846, 0.6108, 0.1648, 0.0408, 0.0244, 0.015, 0.0126, 0.0118, 0.0128, 0.0126, 0.0124, 0.0134, 0.934, 0.018, 0.0178, 0.8976, 0.91, 0.9052, 0.8904, 0.0144, 0.0136, 0.0128, 0.0122, 0.0116, 0.0118, 0.012, 0.0118, 0.0124, 0.0128, 0.0134, 0.0142, 0.0142, 0.0146, 0.016, 0.0254, 0.0302, 0.0286, 0.0288, 0.0282, 0.028, 0.0282, 0.0286, 0.029, 0.0294, 0.8332, 0.5878, 0.1022, 0.0984, 0.5456, 0.4324, 0.421, 0.0864, 0.0948, 0.039, 0.0396, 0.3472, 0.0394, 0.0396, 0.0392, 0.0396, 0.0404, 0.0414, 0.0474, 0.4794, 0.0686, 0.0662, 0.097, 0.0528, 0.049, 0.0486, 0.0494, 0.0504, 0.0518, 0.0536, 0.0586, 0.0658, 0.0768, 0.1526, 0.2832, 0.5182, 0.8712], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chitin_synth_1N.gap.json b/pfam_gap_rates/Chitin_synth_1N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd3a89205a6cc96ca2bca805fd40c69ecb777094
--- /dev/null
+++ b/pfam_gap_rates/Chitin_synth_1N.gap.json
@@ -0,0 +1 @@
+{"family": "Chitin_synth_1N", "n_seqs": 478, "length": 87, "gap_rates": [0.6108786610878661, 0.14435146443514643, 0.1108786610878661, 0.10460251046025104, 0.09623430962343096, 0.09414225941422594, 0.08368200836820083, 0.06694560669456066, 0.06694560669456066, 0.06694560669456066, 0.05439330543933055, 0.05230125523012552, 0.0502092050209205, 0.8326359832635983, 0.04811715481171548, 0.043933054393305436, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.07740585774058577, 0.07740585774058577, 0.0397489539748954, 0.0397489539748954, 0.7196652719665272, 0.9246861924686193, 0.8179916317991632, 0.7071129707112971, 0.100418410041841, 0.17573221757322174, 0.6464435146443515, 0.9414225941422594, 0.7405857740585774, 0.5711297071129707, 0.01882845188284519, 0.8891213389121339, 0.9225941422594143, 0.9037656903765691, 0.8849372384937239, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.016736401673640166, 0.010460251046025104, 0.008368200836820083, 0.006276150627615063, 0.010460251046025104, 0.006276150627615063, 0.006276150627615063, 0.008368200836820083, 0.008368200836820083, 0.010460251046025104, 0.010460251046025104, 0.010460251046025104, 0.010460251046025104, 0.010460251046025104, 0.012552301255230125, 0.012552301255230125, 0.7133891213389121, 0.01882845188284519, 0.012552301255230125, 0.010460251046025104, 0.010460251046025104, 0.010460251046025104, 0.010460251046025104, 0.010460251046025104, 0.010460251046025104, 0.010460251046025104, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.5794979079497908, 0.5711297071129707, 0.010460251046025104, 0.010460251046025104, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.012552301255230125, 0.014644351464435146, 0.016736401673640166, 0.016736401673640166, 0.029288702928870293], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chloroa_b-bind.gap.json b/pfam_gap_rates/Chloroa_b-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92d40a1a1d85b88dc4daa3a09d90cc27cf275545
--- /dev/null
+++ b/pfam_gap_rates/Chloroa_b-bind.gap.json
@@ -0,0 +1 @@
+{"family": "Chloroa_b-bind", "n_seqs": 1855, "length": 215, "gap_rates": [0.8371967654986523, 0.5983827493261455, 0.5547169811320755, 0.5353099730458221, 0.4964959568733154, 0.5159029649595688, 0.45983827493261453, 0.5283018867924528, 0.4210242587601078, 0.4026954177897574, 0.39245283018867927, 0.3708894878706199, 0.36172506738544474, 0.34393530997304583, 0.8258760107816712, 0.32506738544474395, 0.322911051212938, 0.322911051212938, 0.3202156334231806, 0.31913746630727763, 0.31859838274932617, 0.3159029649595687, 0.9444743935309973, 0.925067385444744, 0.37681940700808625, 0.3380053908355795, 0.32183288409703503, 0.8307277628032345, 0.876010781671159, 0.9051212938005391, 0.9358490566037736, 0.9423180592991913, 0.9477088948787062, 0.9390835579514825, 0.9099730458221025, 0.8819407008086253, 0.8673854447439353, 0.8280323450134771, 0.2706199460916442, 0.24097035040431267, 0.2247978436657682, 0.21401617250673854, 0.20431266846361185, 0.1752021563342318, 0.15309973045822103, 0.1353099730458221, 0.12452830188679245, 0.12452830188679245, 0.12506738544474394, 0.12452830188679245, 0.12452830188679245, 0.1261455525606469, 0.12722371967654986, 0.12776280323450134, 0.12830188679245283, 0.11374663072776281, 0.11590296495956873, 0.11590296495956873, 0.11590296495956873, 0.11590296495956873, 0.11482479784366577, 0.11482479784366577, 0.11482479784366577, 0.11590296495956873, 0.11752021563342319, 0.11913746630727763, 0.13045822102425875, 0.13153638814016172, 0.2, 0.15256064690026955, 0.859299191374663, 0.9132075471698113, 0.9342318059299192, 0.876010781671159, 0.8512129380053909, 0.2749326145552561, 0.36981132075471695, 0.5110512129380054, 0.7148247978436658, 0.6490566037735849, 0.49865229110512127, 0.43827493261455525, 0.38544474393531, 0.36172506738544474, 0.3390835579514825, 0.29326145552560645, 0.4830188679245283, 0.8830188679245283, 0.9331536388140161, 0.8140161725067385, 0.2598382749326146, 0.28787061994609164, 0.3266846361185984, 0.9159029649595687, 0.3730458221024259, 0.3902964959568733, 0.5035040431266846, 0.4501347708894879, 0.5196765498652292, 0.6102425876010782, 0.6727762803234502, 0.6948787061994609, 0.7514824797843666, 0.7622641509433963, 0.7908355795148247, 0.8102425876010781, 0.9256064690026954, 0.8086253369272237, 0.786522911051213, 0.7579514824797844, 0.726145552560647, 0.6814016172506738, 0.6549865229110512, 0.5859838274932615, 0.4954177897574124, 0.38005390835579517, 0.36873315363881404, 0.3407008086253369, 0.29757412398921834, 0.2609164420485175, 0.27870619946091646, 0.2733153638814016, 0.27169811320754716, 0.2862533692722372, 0.4118598382749326, 0.2571428571428571, 0.25121293800539085, 0.24797843665768193, 0.2490566037735849, 0.2495956873315364, 0.24043126684636118, 0.24258760107816713, 0.24258760107816713, 0.24420485175202156, 0.24851752021563342, 0.25390835579514826, 0.261455525606469, 0.29380053908355797, 0.2894878706199461, 0.2803234501347709, 0.2722371967654987, 0.2889487870619946, 0.40107816711590294, 0.4037735849056604, 0.476010781671159, 0.6328840970350404, 0.6409703504043127, 0.6587601078167116, 0.663611859838275, 0.7876010781671159, 0.8231805929919137, 0.844743935309973, 0.862533692722372, 0.8706199460916442, 0.9363881401617251, 0.9266846361185984, 0.8646900269541778, 0.859299191374663, 0.8404312668463612, 0.8140161725067385, 0.769811320754717, 0.5040431266846361, 0.45768194070080864, 0.41455525606469, 0.3746630727762803, 0.33153638814016173, 0.30727762803234504, 0.2991913746630728, 0.2921832884097035, 0.2894878706199461, 0.29973045822102423, 0.9482479784366576, 0.9444743935309973, 0.32722371967654984, 0.5584905660377358, 0.31212938005390833, 0.30835579514824796, 0.30727762803234504, 0.3051212938005391, 0.3035040431266846, 0.30835579514824796, 0.31266846361185985, 0.9272237196765498, 0.6943396226415094, 0.33854447439353097, 0.3164420485175202, 0.29595687331536386, 0.2894878706199461, 0.25929919137466306, 0.24097035040431267, 0.2366576819407008, 0.22533692722371967, 0.21940700808625338, 0.2188679245283019, 0.21617250673854446, 0.21671159029649595, 0.21671159029649595, 0.21725067385444743, 0.21725067385444743, 0.2183288409703504, 0.21778975741239892, 0.22048517520215632, 0.22048517520215632, 0.22048517520215632, 0.2210242587601078, 0.22210242587601078, 0.2247978436657682, 0.22533692722371967, 0.22587601078167116, 0.22803234501347708, 0.22964959568733154, 0.2307277628032345, 0.2555256064690027, 0.29487870619946094, 0.36064690026954177], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chromosome_seg.gap.json b/pfam_gap_rates/Chromosome_seg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49a0320397ccedf070b215e49941f9e8d05196ff
--- /dev/null
+++ b/pfam_gap_rates/Chromosome_seg.gap.json
@@ -0,0 +1 @@
+{"family": "Chromosome_seg", "n_seqs": 226, "length": 95, "gap_rates": [0.24336283185840707, 0.04424778761061947, 0.03982300884955752, 0.03982300884955752, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.7389380530973452, 0.7389380530973452, 0.7389380530973452, 0.7389380530973452, 0.7389380530973452, 0.7389380530973452, 0.7433628318584071, 0.7522123893805309, 0.7522123893805309, 0.7566371681415929, 0.7610619469026548, 0.7610619469026548, 0.7699115044247787, 0.8495575221238938, 0.7964601769911505, 0.7699115044247787, 0.7610619469026548, 0.7566371681415929, 0.7522123893805309, 0.7522123893805309, 0.7477876106194691, 0.7433628318584071, 0.7389380530973452, 0.7389380530973452, 0.7389380530973452, 0.7389380530973452, 0.7389380530973452, 0.7389380530973452, 0.004424778761061947, 0.004424778761061947, 0.008849557522123894, 0.004424778761061947, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.17699115044247787, 0.01327433628318584, 0.01327433628318584, 0.017699115044247787, 0.022123893805309734, 0.3893805309734513, 0.030973451327433628, 0.6460176991150443, 0.8008849557522124, 0.8451327433628318, 0.8451327433628318, 0.8938053097345132, 0.9247787610619469, 0.8938053097345132, 0.8495575221238938, 0.8451327433628318, 0.8407079646017699, 0.6504424778761062, 0.6415929203539823, 0.04424778761061947, 0.061946902654867256, 0.0752212389380531, 0.07964601769911504, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.09734513274336283, 0.37168141592920356, 0.11061946902654868, 0.11504424778761062, 0.11946902654867257, 0.12389380530973451, 0.12389380530973451, 0.16371681415929204, 0.6283185840707964], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Clp_N.gap.json b/pfam_gap_rates/Clp_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66d3d6c96b7226c519580d432bd2c9222601a8e6
--- /dev/null
+++ b/pfam_gap_rates/Clp_N.gap.json
@@ -0,0 +1 @@
+{"family": "Clp_N", "n_seqs": 5000, "length": 53, "gap_rates": [0.3956, 0.2854, 0.1646, 0.111, 0.0804, 0.0668, 0.0564, 0.049, 0.045, 0.0412, 0.0374, 0.0332, 0.0182, 0.0146, 0.0136, 0.013, 0.0116, 0.0082, 0.0076, 0.0078, 0.0074, 0.0176, 0.0104, 0.014, 0.0646, 0.0208, 0.2406, 0.1722, 0.029, 0.0272, 0.0382, 0.035, 0.032, 0.033, 0.0346, 0.0362, 0.038, 0.048, 0.0458, 0.0516, 0.0606, 0.0636, 0.067, 0.0742, 0.0882, 0.0972, 0.1148, 0.1314, 0.1698, 0.2164, 0.2892, 0.3762, 0.6908], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cnn_1N.gap.json b/pfam_gap_rates/Cnn_1N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad3e6ac4c6765fac15f513100627dc934a6b352b
--- /dev/null
+++ b/pfam_gap_rates/Cnn_1N.gap.json
@@ -0,0 +1 @@
+{"family": "Cnn_1N", "n_seqs": 291, "length": 78, "gap_rates": [0.31958762886597936, 0.13745704467353953, 0.06872852233676977, 0.061855670103092786, 0.054982817869415807, 0.044673539518900345, 0.024054982817869417, 0.013745704467353952, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.003436426116838488, 0.003436426116838488, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.8762886597938144, 0.9381443298969072, 0.9415807560137457, 0.9175257731958762, 0.8591065292096219, 0.1134020618556701, 0.027491408934707903, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.010309278350515464, 0.010309278350515464, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.020618556701030927, 0.020618556701030927, 0.027491408934707903, 0.027491408934707903, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.05154639175257732, 0.054982817869415807, 0.061855670103092786, 0.06529209621993128, 0.06529209621993128, 0.08247422680412371, 0.19931271477663232, 0.24398625429553264, 0.3230240549828179, 0.8419243986254296], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CoA_binding_3.gap.json b/pfam_gap_rates/CoA_binding_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..384226c35f3ee2543d6bfb692a7299f35deb5c1a
--- /dev/null
+++ b/pfam_gap_rates/CoA_binding_3.gap.json
@@ -0,0 +1 @@
+{"family": "CoA_binding_3", "n_seqs": 2031, "length": 205, "gap_rates": [0.7917282127031019, 0.6021664204825209, 0.5081240768094535, 0.4549483013293944, 0.4273756770064008, 0.42097488921713444, 0.40029542097488924, 0.4066962087641556, 0.3766617429837518, 0.3564746430329887, 0.32644017725258495, 0.30083702609551943, 0.2949286065977351, 0.2619399310684392, 0.20728705071393402, 0.17676021664204825, 0.1447562776957164, 0.12358444116198916, 0.11521418020679468, 0.1019202363367799, 0.09798129000492369, 0.09256523879862137, 0.08862629246676514, 0.08419497784342689, 0.07533234859675036, 0.0723781388478582, 0.06843919251600197, 0.06745445593303791, 0.06499261447562776, 0.0620384047267356, 0.05957656326932546, 0.059084194977843424, 0.05711472181191531, 0.055145248645987195, 0.055145248645987195, 0.055145248645987195, 0.9458394879369768, 0.05662235352043329, 0.05563761693746923, 0.05465288035450517, 0.6868537666174298, 0.9345150172328902, 0.9103889709502708, 0.48892171344165436, 0.051698670605613, 0.05120630231413097, 0.844903988183161, 0.0482520925652388, 0.04874446085672083, 0.049236829148202856, 0.8522895125553914, 0.04431314623338257, 0.043328409650418516, 0.041851304775972424, 0.04234367306745446, 0.04234367306745446, 0.04431314623338257, 0.03938946331856229, 0.032988675529295915, 0.03348104382077794, 0.03938946331856229, 0.034958148695224026, 0.034958148695224026, 0.03003446578040374, 0.027572624322993598, 0.028557360905957656, 0.10979812900049236, 0.033973412112259974, 0.03249630723781388, 0.03052683407188577, 0.026095519448547513, 0.025603151157065487, 0.04086656819300837, 0.09748892171344166, 0.04283604135893648, 0.033973412112259974, 0.947316592811423, 0.9153126538650911, 0.05120630231413097, 0.033973412112259974, 0.028557360905957656, 0.04579025110782865, 0.026095519448547513, 0.8956179222058099, 0.9384539635647464, 0.9074347612013787, 0.8778926637124569, 0.021664204825209258, 0.9276218611521418, 0.946824224519941, 0.8936484490398818, 0.02708025603151157, 0.027572624322993598, 0.025110782865583457, 0.012309207287050714, 0.7813884785819794, 0.9020187099950763, 0.9286065977351059, 0.8168389955686853, 0.7301821762678483, 0.005908419497784343, 0.004923682914820286, 0.006893156080748399, 0.0054160512063023145, 0.8133924175283112, 0.8636139832594781, 0.75726243229936, 0.0054160512063023145, 0.0054160512063023145, 0.006893156080748399, 0.006400787789266372, 0.007385524372230428, 0.007385524372230428, 0.007877892663712457, 0.005908419497784343, 0.006400787789266372, 0.9492860659773511, 0.006400787789266372, 0.006400787789266372, 0.006893156080748399, 0.8380108321024126, 0.8601674052191038, 0.8133924175283112, 0.008370260955194485, 0.010832102412604629, 0.0620384047267356, 0.05416051206302314, 0.022156573116691284, 0.021664204825209258, 0.02117183653372723, 0.015755785327424915, 0.013293943870014771, 0.9423929098966026, 0.009354997538158542, 0.009847365829640572, 0.015755785327424915, 0.01772525849335303, 0.019202363367799114, 0.02018709995076317, 0.023633677991137372, 0.025603151157065487, 0.02708025603151157, 0.06351550960118169, 0.09354997538158542, 0.07533234859675036, 0.06942392909896603, 0.07533234859675036, 0.20827178729689808, 0.21122599704579026, 0.930083702609552, 0.12456917774495323, 0.947808961102905, 0.09010339734121123, 0.07631708517971443, 0.06696208764155588, 0.06499261447562776, 0.07139340226489414, 0.08665681930083703, 0.07828655834564253, 0.06843919251600197, 0.0585918266863614, 0.05563761693746923, 0.056129985228951254, 0.060561299852289516, 0.0620384047267356, 0.06696208764155588, 0.07139340226489414, 0.07434761201378631, 0.08025603151157065, 0.08468734613490891, 0.08567208271787297, 0.08665681930083703, 0.08911866075824718, 0.09207287050713935, 0.09404234367306745, 0.10142786804529788, 0.10635155096011817, 0.12850812407680945, 0.17134416543574593, 0.18020679468242246, 0.2048252092565239, 0.21073362875430823, 0.21516494337764647, 0.21861152141802068, 0.22107336287543083, 0.22648941408173315, 0.2328902018709995, 0.2378138847858198, 0.2363367799113737, 0.23929098966026588, 0.24372230428360414, 0.24864598719842443, 0.25947808961102903, 0.26834071885770555, 0.2796651895617922, 0.29394387001477107, 0.3067454455933038, 0.3190546528803545, 0.3259478089611029, 0.3417035942885278, 0.3604135893648449, 0.39438700147710487, 0.4244214672575086, 0.45100935499753814, 0.4751354012801576], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Coa1.gap.json b/pfam_gap_rates/Coa1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be6fbcbdf0ba386f2d6db74c10aeb3cfb57c43e1
--- /dev/null
+++ b/pfam_gap_rates/Coa1.gap.json
@@ -0,0 +1 @@
+{"family": "Coa1", "n_seqs": 268, "length": 124, "gap_rates": [0.7835820895522388, 0.6231343283582089, 0.5335820895522388, 0.39925373134328357, 0.29850746268656714, 0.27238805970149255, 0.23880597014925373, 0.23507462686567165, 0.22388059701492538, 0.22014925373134328, 0.21641791044776118, 0.2126865671641791, 0.20149253731343283, 0.19776119402985073, 0.19402985074626866, 0.1865671641791045, 0.16044776119402984, 0.14925373134328357, 0.1455223880597015, 0.1455223880597015, 0.13805970149253732, 0.12686567164179105, 0.11567164179104478, 0.10820895522388059, 0.1044776119402985, 0.09701492537313433, 0.0708955223880597, 0.03731343283582089, 0.033582089552238806, 0.029850746268656716, 0.026119402985074626, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.45149253731343286, 0.3917910447761194, 0.06716417910447761, 0.03731343283582089, 0.018656716417910446, 0.026119402985074626, 0.06343283582089553, 0.048507462686567165, 0.8656716417910447, 0.8880597014925373, 0.9104477611940298, 0.8694029850746269, 0.8619402985074627, 0.041044776119402986, 0.22014925373134328, 0.055970149253731345, 0.022388059701492536, 0.018656716417910446, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.018656716417910446, 0.011194029850746268, 0.6977611940298507, 0.6119402985074627, 0.022388059701492536, 0.022388059701492536, 0.018656716417910446, 0.014925373134328358, 0.014925373134328358, 0.026119402985074626, 0.026119402985074626, 0.022388059701492536, 0.018656716417910446, 0.026119402985074626, 0.026119402985074626, 0.026119402985074626, 0.026119402985074626, 0.026119402985074626, 0.033582089552238806, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.033582089552238806, 0.033582089552238806, 0.03731343283582089, 0.041044776119402986, 0.03731343283582089, 0.055970149253731345, 0.055970149253731345, 0.06343283582089553, 0.06716417910447761, 0.07835820895522388, 0.3582089552238806, 0.29850746268656714, 0.11194029850746269, 0.13432835820895522, 0.1417910447761194, 0.16044776119402984, 0.1791044776119403, 0.2126865671641791, 0.22388059701492538, 0.22761194029850745, 0.23880597014925373, 0.24253731343283583, 0.24253731343283583, 0.7947761194029851, 0.34328358208955223, 0.31716417910447764, 0.35074626865671643, 0.3619402985074627, 0.3880597014925373, 0.39552238805970147, 0.4291044776119403, 0.5559701492537313, 0.7649253731343284], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CofC.gap.json b/pfam_gap_rates/CofC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a1cb9fc6faa19a0eb96056d9f0a3ac48c6f76fb
--- /dev/null
+++ b/pfam_gap_rates/CofC.gap.json
@@ -0,0 +1 @@
+{"family": "CofC", "n_seqs": 191, "length": 234, "gap_rates": [0.8691099476439791, 0.675392670157068, 0.09424083769633508, 0.07329842931937172, 0.05759162303664921, 0.05759162303664921, 0.05235602094240838, 0.05235602094240838, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.19895287958115182, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.05759162303664921, 0.09947643979057591, 0.09947643979057591, 0.09947643979057591, 0.07853403141361257, 0.03664921465968586, 0.041884816753926704, 0.03664921465968586, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.9424083769633508, 0.02617801047120419, 0.02617801047120419, 0.5602094240837696, 0.6649214659685864, 0.4816753926701571, 0.14659685863874344, 0.13612565445026178, 0.8638743455497382, 0.9214659685863874, 0.9057591623036649, 0.42408376963350786, 0.11518324607329843, 0.12041884816753927, 0.09424083769633508, 0.041884816753926704, 0.04712041884816754, 0.04712041884816754, 0.05759162303664921, 0.06806282722513089, 0.041884816753926704, 0.08900523560209424, 0.06282722513089005, 0.06806282722513089, 0.07853403141361257, 0.06806282722513089, 0.06806282722513089, 0.5340314136125655, 0.06806282722513089, 0.05235602094240838, 0.041884816753926704, 0.03664921465968586, 0.03664921465968586, 0.04712041884816754, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.9162303664921466, 0.6282722513089005, 0.225130890052356, 0.05235602094240838, 0.041884816753926704, 0.93717277486911, 0.9424083769633508, 0.9319371727748691, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.03664921465968586, 0.03664921465968586, 0.44502617801047123, 0.8010471204188482, 0.5863874345549738, 0.39790575916230364, 0.08376963350785341, 0.06806282722513089, 0.14136125654450263, 0.06806282722513089, 0.05759162303664921, 0.05235602094240838, 0.031413612565445025, 0.02617801047120419, 0.02617801047120419, 0.031413612565445025, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.041884816753926704, 0.05235602094240838, 0.03664921465968586, 0.031413612565445025, 0.031413612565445025, 0.02617801047120419, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.05235602094240838, 0.05235602094240838, 0.05759162303664921, 0.9424083769633508, 0.31413612565445026, 0.9267015706806283, 0.28272251308900526, 0.8900523560209425, 0.07329842931937172, 0.05235602094240838, 0.05235602094240838, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.9476439790575916, 0.04712041884816754, 0.04712041884816754, 0.9476439790575916, 0.04712041884816754, 0.9214659685863874, 0.041884816753926704, 0.8586387434554974, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.06282722513089005, 0.07853403141361257, 0.07853403141361257, 0.3717277486910995, 0.08900523560209424, 0.09424083769633508, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.09947643979057591, 0.10471204188481675, 0.11518324607329843, 0.11518324607329843, 0.14136125654450263, 0.14659685863874344, 0.1518324607329843, 0.1518324607329843, 0.2198952879581152, 0.24083769633507854, 0.2931937172774869, 0.2774869109947644, 0.2879581151832461, 0.28272251308900526, 0.29842931937172773, 0.27225130890052357, 0.28272251308900526, 0.2879581151832461, 0.28272251308900526, 0.2879581151832461, 0.2931937172774869, 0.2931937172774869, 0.2931937172774869, 0.2774869109947644, 0.2879581151832461, 0.3089005235602094, 0.3089005235602094, 0.2670157068062827, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2617801047120419, 0.2617801047120419, 0.3036649214659686, 0.41361256544502617, 0.44502617801047123, 0.518324607329843, 0.5392670157068062, 0.5602094240837696, 0.5759162303664922, 0.581151832460733, 0.5863874345549738, 0.6178010471204188, 0.6963350785340314, 0.643979057591623, 0.675392670157068, 0.6701570680628273, 0.675392670157068, 0.6858638743455497, 0.7015706806282722, 0.7225130890052356, 0.7225130890052356, 0.743455497382199, 0.7539267015706806, 0.774869109947644, 0.8115183246073299, 0.8219895287958116, 0.8429319371727748, 0.8534031413612565, 0.8586387434554974, 0.8743455497382199, 0.9057591623036649, 0.9267015706806283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Coiled-coil_56.gap.json b/pfam_gap_rates/Coiled-coil_56.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f2845c384ae190ae6fa392f51326011b7059033
--- /dev/null
+++ b/pfam_gap_rates/Coiled-coil_56.gap.json
@@ -0,0 +1 @@
+{"family": "Coiled-coil_56", "n_seqs": 124, "length": 100, "gap_rates": [0.9274193548387096, 0.9112903225806451, 0.9112903225806451, 0.9032258064516129, 0.8951612903225806, 0.8951612903225806, 0.8951612903225806, 0.8870967741935484, 0.8629032258064516, 0.8548387096774194, 0.8548387096774194, 0.8225806451612904, 0.8145161290322581, 0.7903225806451613, 0.7661290322580645, 0.7661290322580645, 0.7661290322580645, 0.7741935483870968, 0.7419354838709677, 0.717741935483871, 0.6612903225806451, 0.6451612903225806, 0.6370967741935484, 0.6370967741935484, 0.6370967741935484, 0.6290322580645161, 0.6290322580645161, 0.6209677419354839, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6129032258064516, 0.6048387096774194, 0.6129032258064516, 0.6048387096774194, 0.5887096774193549, 0.5645161290322581, 0.5564516129032258, 0.5080645161290323, 0.46774193548387094, 0.43548387096774194, 0.7741935483870968, 0.7419354838709677, 0.4112903225806452, 0.3951612903225806, 0.3629032258064516, 0.3467741935483871, 0.3387096774193548, 0.3064516129032258, 0.13709677419354838, 0.008064516129032258, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.04032258064516129, 0.20161290322580644, 0.056451612903225805, 0.2903225806451613, 0.31451612903225806, 0.3790322580645161, 0.4032258064516129, 0.43548387096774194, 0.45161290322580644, 0.45161290322580644, 0.5, 0.5645161290322581, 0.5967741935483871, 0.6370967741935484, 0.7661290322580645, 0.7741935483870968, 0.8225806451612904, 0.8467741935483871, 0.8709677419354839, 0.8951612903225806, 0.9193548387096774, 0.9435483870967742], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ComA.gap.json b/pfam_gap_rates/ComA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13d63aee0ea587b4aec2036a23879895fe545c2d
--- /dev/null
+++ b/pfam_gap_rates/ComA.gap.json
@@ -0,0 +1 @@
+{"family": "ComA", "n_seqs": 226, "length": 277, "gap_rates": [0.9469026548672567, 0.3893805309734513, 0.22123893805309736, 0.1902654867256637, 0.168141592920354, 0.168141592920354, 0.1592920353982301, 0.14601769911504425, 0.11061946902654868, 0.08849557522123894, 0.08849557522123894, 0.084070796460177, 0.084070796460177, 0.084070796460177, 0.084070796460177, 0.38495575221238937, 0.38495575221238937, 0.07964601769911504, 0.07964601769911504, 0.6902654867256637, 0.6991150442477876, 0.6991150442477876, 0.6991150442477876, 0.6902654867256637, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.0752212389380531, 0.07964601769911504, 0.07964601769911504, 0.06637168141592921, 0.06637168141592921, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Competence.gap.json b/pfam_gap_rates/Competence.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bfb9362dd55f22f66d8ab354004a841d722c35e6
--- /dev/null
+++ b/pfam_gap_rates/Competence.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Condensin2nSMC.gap.json b/pfam_gap_rates/Condensin2nSMC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e72f005dcd2a0c6b58fd692a11b1cc70ec2eae2
--- /dev/null
+++ b/pfam_gap_rates/Condensin2nSMC.gap.json
@@ -0,0 +1 @@
+{"family": "Condensin2nSMC", "n_seqs": 130, "length": 161, "gap_rates": [0.5538461538461539, 0.34615384615384615, 0.27692307692307694, 0.26153846153846155, 0.23846153846153847, 0.23076923076923078, 0.23076923076923078, 0.2153846153846154, 0.2153846153846154, 0.2, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.8692307692307693, 0.19230769230769232, 0.18461538461538463, 0.27692307692307694, 0.27692307692307694, 0.2692307692307692, 0.18461538461538463, 0.18461538461538463, 0.18461538461538463, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.8307692307692308, 0.8076923076923077, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.16153846153846155, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.14615384615384616, 0.14615384615384616, 0.13846153846153847, 0.13846153846153847, 0.13076923076923078, 0.13076923076923078, 0.13076923076923078, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.13076923076923078, 0.12307692307692308, 0.2230769230769231, 0.12307692307692308, 0.12307692307692308, 0.8692307692307693, 0.8923076923076924, 0.8846153846153846, 0.823076923076923, 0.13076923076923078, 0.11538461538461539, 0.1076923076923077, 0.11538461538461539, 0.1076923076923077, 0.2, 0.1, 0.1, 0.13076923076923078, 0.1, 0.1076923076923077, 0.09230769230769231, 0.09230769230769231, 0.08461538461538462, 0.08461538461538462, 0.09230769230769231, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08461538461538462, 0.2692307692307692, 0.8846153846153846, 0.9384615384615385, 0.9, 0.7461538461538462, 0.09230769230769231, 0.07692307692307693, 0.07692307692307693, 0.06923076923076923, 0.06923076923076923, 0.06923076923076923, 0.07692307692307693, 0.06923076923076923, 0.06923076923076923, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.15384615384615385, 0.823076923076923, 0.09230769230769231, 0.09230769230769231, 0.1, 0.09230769230769231, 0.08461538461538462, 0.08461538461538462, 0.07692307692307693, 0.08461538461538462, 0.08461538461538462, 0.08461538461538462, 0.08461538461538462, 0.08461538461538462, 0.08461538461538462, 0.08461538461538462, 0.08461538461538462, 0.08461538461538462, 0.1, 0.1, 0.1, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.08461538461538462, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.1076923076923077, 0.1076923076923077, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.12307692307692308, 0.12307692307692308, 0.13076923076923078, 0.13076923076923078, 0.13076923076923078, 0.13076923076923078, 0.13076923076923078, 0.18461538461538463, 0.3384615384615385], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Coprogen_oxidas.gap.json b/pfam_gap_rates/Coprogen_oxidas.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..405c5efb7f87cb84e40f2fc57029affea57fce29
--- /dev/null
+++ b/pfam_gap_rates/Coprogen_oxidas.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CorA.gap.json b/pfam_gap_rates/CorA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c529b74379f3399366174c216f0536143fddbe05
--- /dev/null
+++ b/pfam_gap_rates/CorA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CpeT.gap.json b/pfam_gap_rates/CpeT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdfd1b8a87485b28ebe6d865fc4d3990bb97a1aa
--- /dev/null
+++ b/pfam_gap_rates/CpeT.gap.json
@@ -0,0 +1 @@
+{"family": "CpeT", "n_seqs": 134, "length": 212, "gap_rates": [0.6865671641791045, 0.1417910447761194, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08955223880597014, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.9328358208955224, 0.9328358208955224, 0.9402985074626866, 0.9328358208955224, 0.9328358208955224, 0.26865671641791045, 0.08955223880597014, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.08208955223880597, 0.09701492537313433, 0.08955223880597014, 0.1044776119402985, 0.11194029850746269, 0.8880597014925373, 0.9253731343283582, 0.8507462686567164, 0.1044776119402985, 0.09701492537313433, 0.8805970149253731, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.08955223880597014, 0.1044776119402985, 0.08955223880597014, 0.08955223880597014, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.06716417910447761, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.08208955223880597, 0.08208955223880597, 0.07462686567164178, 0.08208955223880597, 0.7910447761194029, 0.3358208955223881, 0.5522388059701493, 0.4253731343283582, 0.417910447761194, 0.09701492537313433, 0.08955223880597014, 0.08955223880597014, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.09701492537313433, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.08955223880597014, 0.08955223880597014, 0.2462686567164179, 0.9477611940298507, 0.9253731343283582, 0.08955223880597014, 0.06716417910447761, 0.05970149253731343, 0.05970149253731343, 0.07462686567164178, 0.08955223880597014, 0.07462686567164178, 0.08208955223880597, 0.06716417910447761, 0.7761194029850746, 0.7835820895522388, 0.7910447761194029, 0.7910447761194029, 0.7985074626865671, 0.8283582089552238, 0.7985074626865671, 0.7910447761194029, 0.7910447761194029, 0.7761194029850746, 0.7761194029850746, 0.06716417910447761, 0.31343283582089554, 0.11194029850746269, 0.14925373134328357, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.8507462686567164, 0.8805970149253731, 0.8656716417910447, 0.8208955223880597, 0.7164179104477612, 0.27611940298507465, 0.27611940298507465, 0.26119402985074625, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.48507462686567165, 0.07462686567164178, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.05970149253731343, 0.05970149253731343, 0.07462686567164178, 0.9253731343283582, 0.06716417910447761, 0.05970149253731343, 0.41044776119402987, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.7985074626865671, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.5074626865671642, 0.08208955223880597, 0.08208955223880597, 0.08208955223880597, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.09701492537313433, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.9253731343283582, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.15671641791044777, 0.44776119402985076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Creatininase.gap.json b/pfam_gap_rates/Creatininase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67a3cdc8e0e666ddf4457af9c5122ef4ba53c4c6
--- /dev/null
+++ b/pfam_gap_rates/Creatininase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cse1.gap.json b/pfam_gap_rates/Cse1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..850bfa1c9dfb0e2b17c44ad89b0bcf9314a1d181
--- /dev/null
+++ b/pfam_gap_rates/Cse1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cupin_1.gap.json b/pfam_gap_rates/Cupin_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..453269141d9c65117ea7ddb987e4984efd6f9024
--- /dev/null
+++ b/pfam_gap_rates/Cupin_1.gap.json
@@ -0,0 +1 @@
+{"family": "Cupin_1", "n_seqs": 2889, "length": 173, "gap_rates": [0.7840083073727934, 0.6438213914849429, 0.6019383869851159, 0.5527864312911042, 0.4949809622706819, 0.4700588438906196, 0.46452059536171686, 0.923502942194531, 0.4240221529941156, 0.37590861889927313, 0.33921772239529246, 0.31983385254413293, 0.25614399446175146, 0.22914503288335064, 0.21633783316026306, 0.2066458982346833, 0.2000692281066113, 0.19176185531325718, 0.18483904465212878, 0.17757009345794392, 0.16787815853236415, 0.16164762893734858, 0.15680166147455868, 0.1523018345448252, 0.16164762893734858, 0.18103149878850813, 0.36310141917618555, 0.3080650744202146, 0.16580131533402562, 0.14641744548286603, 0.1439944617514711, 0.1325718241606092, 0.12599515403253722, 0.12461059190031153, 0.11768778123918311, 0.10799584631360332, 0.1010730356524749, 0.09726548978885427, 0.09415022499134648, 0.09484250605745932, 0.9113880235375562, 0.09553478712357218, 0.08653513326410522, 0.07995846313603323, 0.07718933887158186, 0.07511249567324334, 0.0744202146071305, 0.07130494980962271, 0.06507442021460713, 0.05053651782623745, 0.04707511249567324, 0.04672897196261682, 0.2814122533748702, 0.05088265835929388, 0.04672897196261682, 0.0463828314295604, 0.04672897196261682, 0.0446521287642783, 0.04361370716510903, 0.04188300449982693, 0.04119072343371409, 0.04119072343371409, 0.040844582900657664, 0.04188300449982693, 0.04257528556593977, 0.03911388023537556, 0.037383177570093455, 0.16857043959847698, 0.04707511249567324, 0.04188300449982693, 0.04188300449982693, 0.04292142609899619, 0.04153686396677051, 0.04222914503288335, 0.07061266874350987, 0.5822083766009, 0.8445829006576671, 0.8695050190377294, 0.907926618206992, 0.9169262720664589, 0.9210799584631361, 0.9300796123226029, 0.9401176877812392, 0.947386638975424, 0.944963655244029, 0.9363101419176185, 0.9283489096573209, 0.919349255797854, 0.9124264451367256, 0.893042575285566, 0.8501211491865698, 0.7964693665628245, 0.49601938386985117, 0.12841813776393216, 0.06922810661128419, 0.05019037729318103, 0.0512287988923503, 0.056074766355140186, 0.04257528556593977, 0.9068881966078228, 0.940809968847352, 0.8591208030460367, 0.040498442367601244, 0.04119072343371409, 0.04119072343371409, 0.040152301834544823, 0.040152301834544823, 0.040498442367601244, 0.04222914503288335, 0.04119072343371409, 0.040844582900657664, 0.04119072343371409, 0.04222914503288335, 0.04361370716510903, 0.04430598823122188, 0.04499826929733472, 0.04569055036344756, 0.054690204222914506, 0.058497750086535134, 0.059882312218760815, 0.06403599861543786, 0.0647282796815507, 0.1820699203876774, 0.893042575285566, 0.31221876081689165, 0.0910349601938387, 0.07684319833852545, 0.07892004153686397, 0.08134302526825891, 0.08307372793354102, 0.0844582900657667, 0.08826583592938733, 0.09518864659051575, 0.1010730356524749, 0.10730356524749048, 0.11145725164416753, 0.11526479750778816, 0.11768778123918311, 0.11907234337140879, 0.13187954309449637, 0.13187954309449637, 0.13395638629283488, 0.25268258913118724, 0.25579785392869503, 0.23295257874697128, 0.2270681896850121, 0.2900657667012807, 0.33817930079612324, 0.9421945309795777, 0.8573901003807546, 0.3052959501557632, 0.2301834544825199, 0.23399100034614054, 0.2336448598130841, 0.23260643821391486, 0.22741433021806853, 0.3406022845275182, 0.19556940117687782, 0.19418483904465214, 0.24091381100726894, 0.23952924887504326, 0.19487712011076497, 0.19730010384215993, 0.20076150917272412, 0.20456905503634476, 0.21079958463136034, 0.22464520595361717, 0.24783662166839737, 0.30148840429214263, 0.3582554517133956, 0.46244375216337835, 0.5763239875389408, 0.715472481827622], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Curlin_rpt.gap.json b/pfam_gap_rates/Curlin_rpt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c734a01d5d9ab979ac1b4f555c5eeb5d8f875b0d
--- /dev/null
+++ b/pfam_gap_rates/Curlin_rpt.gap.json
@@ -0,0 +1 @@
+{"family": "Curlin_rpt", "n_seqs": 365, "length": 43, "gap_rates": [0.4383561643835616, 0.40821917808219177, 0.27945205479452057, 0.12054794520547946, 0.06575342465753424, 0.043835616438356165, 0.03287671232876712, 0.00821917808219178, 0.005479452054794521, 0.0027397260273972603, 0.0027397260273972603, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9342465753424658, 0.936986301369863, 0.9397260273972603, 0.947945205479452, 0.9424657534246575, 0.936986301369863, 0.9342465753424658, 0.9232876712328767, 0.0, 0.0, 0.00821917808219178, 0.00821917808219178, 0.873972602739726, 0.00821917808219178, 0.00821917808219178, 0.0410958904109589, 0.04657534246575343, 0.04657534246575343, 0.049315068493150684, 0.052054794520547946, 0.057534246575342465, 0.07671232876712329, 0.07945205479452055, 0.07945205479452055, 0.2136986301369863, 0.2821917808219178], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyclin.gap.json b/pfam_gap_rates/Cyclin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16b42da612d4556c9c281076548127f9061adf21
--- /dev/null
+++ b/pfam_gap_rates/Cyclin.gap.json
@@ -0,0 +1 @@
+{"family": "Cyclin", "n_seqs": 1294, "length": 220, "gap_rates": [0.9459041731066461, 0.9265842349304482, 0.9211746522411128, 0.9173106646058733, 0.9165378670788253, 0.9142194744976816, 0.9126738794435858, 0.91112828438949, 0.9095826893353941, 0.9049459041731066, 0.901854714064915, 0.8995363214837713, 0.8956723338485317, 0.893353941267388, 0.8902627511591963, 0.884853168469861, 0.8794435857805255, 0.8771251931993818, 0.8701700154559505, 0.866306027820711, 0.8601236476043277, 0.8562596599690881, 0.8462132921174652, 0.8384853168469861, 0.8323029366306027, 0.8268933539412674, 0.8253477588871716, 0.8153013910355487, 0.8145285935085008, 0.8098918083462133, 0.8098918083462133, 0.8137557959814529, 0.8686244204018547, 0.8431221020092736, 0.8284389489953632, 0.8222565687789799, 0.8176197836166924, 0.7712519319938176, 0.8941267387944358, 0.901854714064915, 0.9119010819165378, 0.9180834621329211, 0.9273570324574961, 0.9327666151468316, 0.9389489953632149, 0.9497681607418856, 0.9435857805255023, 0.9366306027820711, 0.9273570324574961, 0.9227202472952086, 0.9142194744976816, 0.9080370942812983, 0.8972179289026275, 0.8918083462132921, 0.7426584234930448, 0.740340030911901, 0.7264296754250387, 0.7063369397217929, 0.6823802163833076, 0.6661514683153014, 0.6499227202472952, 0.6236476043276662, 0.6035548686244204, 0.5749613601236476, 0.5432766615146831, 0.508500772797527, 0.47372488408037094, 0.43353941267387947, 0.42194744976816073, 0.41731066460587324, 0.4134466769706337, 0.40108191653786707, 0.3995363214837713, 0.3972179289026275, 0.35239567233384855, 0.91112828438949, 0.9149922720247295, 0.9157650695517774, 0.9165378670788253, 0.9165378670788253, 0.9204018547140649, 0.9227202472952086, 0.9250386398763524, 0.9265842349304482, 0.9289026275115919, 0.9319938176197836, 0.9343122102009274, 0.9381761978361669, 0.9428129829984544, 0.9443585780525502, 0.9466769706336939, 0.9466769706336939, 0.9474497681607419, 0.9489953632148377, 0.9489953632148377, 0.9474497681607419, 0.9466769706336939, 0.9451313755795981, 0.9428129829984544, 0.9412673879443586, 0.9350850077279753, 0.9335394126738794, 0.9312210200927357, 0.9273570324574961, 0.9258114374034003, 0.9242658423493045, 0.9211746522411128, 0.9173106646058733, 0.9165378670788253, 0.9165378670788253, 0.9157650695517774, 0.9134466769706336, 0.910355486862442, 0.3377125193199382, 0.3361669242658423, 0.33462132921174653, 0.32380216383307575, 0.3160741885625966, 0.3106646058732612, 0.2874806800618238, 0.28052550231839257, 0.27125193199381764, 0.26661514683153015, 0.2650695517774343, 0.26275115919629055, 0.26197836166924265, 0.25193199381761977, 0.2511591962905719, 0.241112828438949, 0.2357032457496136, 0.2241112828438949, 0.21561051004636786, 0.20015455950540958, 0.19397217928902627, 0.18547140649149924, 0.17697063369397217, 0.17619783616692428, 0.17697063369397217, 0.17542503863987635, 0.16924265842349304, 0.16846986089644514, 0.16769706336939721, 0.16846986089644514, 0.16537867078825347, 0.1661514683153014, 0.16769706336939721, 0.16846986089644514, 0.16692426584234932, 0.9010819165378671, 0.9397217928902627, 0.9459041731066461, 0.9489953632148377, 0.9428129829984544, 0.9149922720247295, 0.8910355486862442, 0.7534775888717156, 0.6970633693972179, 0.30602782071097373, 0.18160741885625967, 0.17001545595054096, 0.1615146831530139, 0.15765069551777433, 0.1545595054095827, 0.14528593508500773, 0.13987635239567234, 0.13137557959814528, 0.12982998454404945, 0.1275115919629057, 0.13601236476043277, 0.11128284389489954, 0.08423493044822257, 0.07187017001545595, 0.07109737248840804, 0.0695517774343122, 0.07032457496136012, 0.07032457496136012, 0.07032457496136012, 0.07032457496136012, 0.06800618238021638, 0.06723338485316847, 0.06800618238021638, 0.06800618238021638, 0.06723338485316847, 0.06800618238021638, 0.0687789799072643, 0.0695517774343122, 0.0695517774343122, 0.07032457496136012, 0.07109737248840804, 0.0695517774343122, 0.0695517774343122, 0.07032457496136012, 0.07341576506955177, 0.07496136012364761, 0.07418856259659969, 0.07341576506955177, 0.07264296754250386, 0.07187017001545595, 0.07264296754250386, 0.07418856259659969, 0.07418856259659969, 0.07573415765069552, 0.07573415765069552, 0.07573415765069552, 0.07573415765069552, 0.07573415765069552, 0.07573415765069552, 0.07573415765069552, 0.07573415765069552, 0.07959814528593509, 0.08191653786707882, 0.08268933539412673, 0.08268933539412673, 0.08578052550231839, 0.08964451313755796, 0.09582689335394126, 0.09969088098918083, 0.10896445131375579, 0.13446676970633695, 0.3554868624420402], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CysG_dimeriser.gap.json b/pfam_gap_rates/CysG_dimeriser.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f986307ee490600e1a789b076579c6a820c79473
--- /dev/null
+++ b/pfam_gap_rates/CysG_dimeriser.gap.json
@@ -0,0 +1 @@
+{"family": "CysG_dimeriser", "n_seqs": 373, "length": 59, "gap_rates": [0.44235924932975873, 0.10991957104557641, 0.07506702412868632, 0.045576407506702415, 0.03753351206434316, 0.029490616621983913, 0.010723860589812333, 0.005361930294906166, 0.005361930294906166, 0.005361930294906166, 0.005361930294906166, 0.002680965147453083, 0.0, 0.0, 0.002680965147453083, 0.002680965147453083, 0.0, 0.0, 0.08042895442359249, 0.0, 0.010723860589812333, 0.013404825737265416, 0.07506702412868632, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002680965147453083, 0.0, 0.0, 0.0, 0.0, 0.002680965147453083, 0.935656836461126, 0.040214477211796246, 0.05093833780160858, 0.04289544235924933, 0.04289544235924933, 0.045576407506702415, 0.05093833780160858, 0.06166219839142091, 0.064343163538874, 0.07506702412868632, 0.08579088471849866, 0.10187667560321716, 0.11528150134048257, 0.12064343163538874, 0.12332439678284182, 0.13136729222520108, 0.13136729222520108, 0.13672922252010725, 0.1447721179624665, 0.15281501340482573, 0.1742627345844504, 0.2225201072386059, 0.2761394101876676, 0.34584450402144773, 0.517426273458445], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CytB6-F_Fe-S.gap.json b/pfam_gap_rates/CytB6-F_Fe-S.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fdbf1deaf207d801c4b660bdeae33b27decabcee
--- /dev/null
+++ b/pfam_gap_rates/CytB6-F_Fe-S.gap.json
@@ -0,0 +1 @@
+{"family": "CytB6-F_Fe-S", "n_seqs": 179, "length": 39, "gap_rates": [0.6312849162011173, 0.6480446927374302, 0.4134078212290503, 0.3575418994413408, 0.3407821229050279, 0.19553072625698323, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0223463687150838, 0.0223463687150838, 0.13966480446927373, 0.2122905027932961, 0.4134078212290503], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_B559.gap.json b/pfam_gap_rates/Cytochrom_B559.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7aa4f6c91670b173292ba4633b4a184d1d458f89
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_B559.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrom_B559", "n_seqs": 214, "length": 29, "gap_rates": [0.18691588785046728, 0.06542056074766354, 0.04672897196261682, 0.037383177570093455, 0.02336448598130841, 0.014018691588785047, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.004672897196261682, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004672897196261682, 0.004672897196261682, 0.014018691588785047, 0.018691588785046728, 0.02336448598130841], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_B_N_2.gap.json b/pfam_gap_rates/Cytochrom_B_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f050ae34d302f36e1f8b50f3cc977e458cd9e065
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_B_N_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_C552.gap.json b/pfam_gap_rates/Cytochrom_C552.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7befebe099bc96e3b52d3d6d5be413c88485dba9
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_C552.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrome_C7.gap.json b/pfam_gap_rates/Cytochrome_C7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6738526ea4bad265247deb8311e3e9dd611f557
--- /dev/null
+++ b/pfam_gap_rates/Cytochrome_C7.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrome_C7", "n_seqs": 469, "length": 121, "gap_rates": [0.4669509594882729, 0.2622601279317697, 0.2068230277185501, 0.18336886993603413, 0.16631130063965885, 0.15991471215351813, 0.14712153518123666, 0.1257995735607676, 0.1257995735607676, 0.13859275053304904, 0.22174840085287847, 0.9275053304904051, 0.9488272921108742, 0.9189765458422174, 0.42430703624733473, 0.17057569296375266, 0.010660980810234541, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.8528784648187633, 0.21961620469083157, 0.9147121535181236, 0.39232409381663114, 0.3816631130063966, 0.3773987206823028, 0.39019189765458423, 0.6396588486140725, 0.43923240938166314, 0.9147121535181236, 0.9488272921108742, 0.9360341151385928, 0.8742004264392325, 0.39019189765458423, 0.3582089552238806, 0.7889125799573561, 0.6268656716417911, 0.3283582089552239, 0.326226012793177, 0.27292110874200426, 0.34328358208955223, 0.31130063965884863, 0.2814498933901919, 0.18550106609808104, 0.14285714285714285, 0.12366737739872068, 0.4690831556503198, 0.42857142857142855, 0.3624733475479744, 0.3304904051172708, 0.31343283582089554, 0.31343283582089554, 0.3091684434968017, 0.5223880597014925, 0.26439232409381663, 0.21535181236673773, 0.6823027718550106, 0.697228144989339, 0.6695095948827292, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.0021321961620469083, 0.464818763326226, 0.4925373134328358, 0.509594882729211, 0.5522388059701493, 0.579957356076759, 0.6226012793176973, 0.652452025586354, 0.6588486140724946, 0.6716417910447762, 0.6844349680170576, 0.6908315565031983, 0.7078891257995735, 0.814498933901919, 0.835820895522388, 0.8805970149253731, 0.9339019189765458, 0.8976545842217484, 0.8443496801705757, 0.8230277185501066, 0.744136460554371, 0.6950959488272921, 0.6844349680170576, 0.673773987206823, 0.6695095948827292, 0.6545842217484008, 0.6332622601279317, 0.5948827292110874, 0.5756929637526652, 0.5437100213219617, 0.5031982942430704, 0.47334754797441364, 0.43710021321961623, 0.17270788912579957, 0.26865671641791045, 0.34328358208955223, 0.27505330490405117, 0.07462686567164178, 0.0255863539445629, 0.0255863539445629, 0.0255863539445629, 0.0255863539445629, 0.0255863539445629, 0.0255863539445629, 0.0255863539445629, 0.34328358208955223], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DB.gap.json b/pfam_gap_rates/DB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c013deae0c02ed942998cd8499b0ddae91d60a7
--- /dev/null
+++ b/pfam_gap_rates/DB.gap.json
@@ -0,0 +1 @@
+{"family": "DB", "n_seqs": 519, "length": 116, "gap_rates": [0.11753371868978806, 0.11753371868978806, 0.11753371868978806, 0.26011560693641617, 0.14065510597302505, 0.11175337186897881, 0.10789980732177264, 0.10982658959537572, 0.8728323699421965, 0.09633911368015415, 0.09633911368015415, 0.09441233140655106, 0.09248554913294797, 0.09248554913294797, 0.789980732177264, 0.08670520231213873, 0.08477842003853564, 0.08477842003853564, 0.08477842003853564, 0.08477842003853564, 0.08477842003853564, 0.08477842003853564, 0.08477842003853564, 0.08477842003853564, 0.14836223506743737, 0.2909441233140655, 0.35067437379576105, 0.45664739884393063, 0.8265895953757225, 0.859344894026975, 0.603082851637765, 0.14065510597302505, 0.08092485549132948, 0.07514450867052024, 0.07321772639691715, 0.06551059730250482, 0.03468208092485549, 0.017341040462427744, 0.01348747591522158, 0.01348747591522158, 0.3737957610789981, 0.9248554913294798, 0.011560693641618497, 0.011560693641618497, 0.009633911368015413, 0.009633911368015413, 0.007707129094412331, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.0, 0.0, 0.0019267822736030828, 0.0019267822736030828, 0.0038535645472061657, 0.0038535645472061657, 0.0038535645472061657, 0.0038535645472061657, 0.007707129094412331, 0.007707129094412331, 0.007707129094412331, 0.009633911368015413, 0.011560693641618497, 0.011560693641618497, 0.01348747591522158, 0.019267822736030827, 0.5163776493256262, 0.5838150289017341, 0.9094412331406551, 0.9094412331406551, 0.6936416184971098, 0.5163776493256262, 0.5144508670520231, 0.023121387283236993, 0.025048169556840076, 0.030828516377649325, 0.030828516377649325, 0.030828516377649325, 0.03275529865125241, 0.03275529865125241, 0.9267822736030829, 0.04046242774566474, 0.12716763005780346, 0.11368015414258188, 0.9402697495183044, 0.9113680154142582, 0.720616570327553, 0.44701348747591524, 0.36608863198458574, 0.2813102119460501, 0.1252408477842004, 0.11753371868978806, 0.1252408477842004, 0.14450867052023122, 0.13680154142581888, 0.12909441233140656, 0.10404624277456648, 0.9113680154142582, 0.08477842003853564, 0.07707129094412331, 0.07514450867052024, 0.07514450867052024, 0.07707129094412331, 0.08285163776493257, 0.08863198458574181, 0.9344894026974951, 0.09248554913294797, 0.09248554913294797, 0.09441233140655106, 0.09633911368015415, 0.09826589595375723, 0.09826589595375723, 0.09826589595375723, 0.21579961464354527], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_1.gap.json b/pfam_gap_rates/DDE_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd50830898e51ce4da1fb011c4ce404a5809a7eb
--- /dev/null
+++ b/pfam_gap_rates/DDE_1.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_1", "n_seqs": 2062, "length": 193, "gap_rates": [0.8011639185257032, 0.6139670223084384, 0.5387972841901066, 0.44034917555771097, 0.40397672162948595, 0.3797284190106692, 0.36372453928225024, 0.35402521823472355, 0.3501454898157129, 0.4049466537342386, 0.3385063045586809, 0.33365664403491757, 0.34626576139670223, 0.32783705140640157, 0.3467507274490786, 0.3234723569350145, 0.3176527643064985, 0.3137730358874879, 0.2963142580019399, 0.2948593598448109, 0.2929194956353055, 0.2924345295829292, 0.29146459747817655, 0.2909796314258002, 0.29049466537342383, 0.29000969932104753, 0.2885548011639185, 0.2885548011639185, 0.29146459747817655, 0.2909796314258002, 0.29146459747817655, 0.29000969932104753, 0.2895247332686712, 0.2890397672162949, 0.9277400581959263, 0.8220174587778856, 0.6202715809893308, 0.44277400581959264, 0.35208535402521823, 0.32201745877788557, 0.28467507274490783, 0.27788554801163917, 0.26818622696411254, 0.2638215324927255, 0.2638215324927255, 0.2575169738118332, 0.2478176527643065, 0.24248302618816683, 0.2361784675072745, 0.2318137730358875, 0.22793404461687683, 0.2318137730358875, 0.23229873908826382, 0.22162948593598447, 0.21871968962172647, 0.2148399612027158, 0.21096023278370515, 0.20950533462657614, 0.2061105722599418, 0.20562560620756548, 0.20514064015518912, 0.2090203685741998, 0.2061105722599418, 0.5877788554801164, 0.2133850630455868, 0.20950533462657614, 0.20708050436469447, 0.20514064015518912, 0.2061105722599418, 0.2032007759456838, 0.2061105722599418, 0.20514064015518912, 0.8006789524733269, 0.8341416100872939, 0.9282250242483027, 0.9340446168768186, 0.8409311348205626, 0.8244422890397672, 0.6134820562560621, 0.4917555771096023, 0.3026188166828322, 0.23811833171677982, 0.20562560620756548, 0.17895247332686712, 0.17410281280310377, 0.17313288069835112, 0.16731328806983511, 0.16682832201745879, 0.16488845780795344, 0.1614936954413191, 0.15809893307468478, 0.15664403491755577, 0.1542192046556741, 0.15518913676042678, 0.1527643064985451, 0.1556741028128031, 0.15664403491755577, 0.8748787584869059, 0.16100872938894278, 0.1629485935984481, 0.16828322017458777, 0.17652764306498545, 0.5140640155189137, 0.4151309408341416, 0.4015518913676043, 0.3574199806013579, 0.2618816682832202, 0.18380213385063046, 0.15809893307468478, 0.15761396702230843, 0.1571290009699321, 0.15615906886517944, 0.1556741028128031, 0.15615906886517944, 0.15615906886517944, 0.16246362754607177, 0.15955383123181377, 0.16391852570320078, 0.1614936954413191, 0.1600387972841901, 0.15470417070805043, 0.16052376333656643, 0.15664403491755577, 0.16197866149369544, 0.1614936954413191, 0.16100872938894278, 0.1542192046556741, 0.15664403491755577, 0.15955383123181377, 0.1658583899127061, 0.1687681862269641, 0.17507274490785646, 0.17652764306498545, 0.1755577109602328, 0.17507274490785646, 0.17701260911736177, 0.18040737148399613, 0.18768186226964112, 0.19398642095053345, 0.20126091173617847, 0.2133850630455868, 0.22405431619786614, 0.2347235693501455, 0.24393792434529582, 0.2613967022308438, 0.26430649854510185, 0.2812803103782735, 0.3021338506304559, 0.3142580019398642, 0.32444228903976724, 0.3467507274490786, 0.36517943743937925, 0.3777885548011639, 0.3952473326867119, 0.41561590688651795, 0.4296799224054316, 0.8132880698351116, 0.8709990300678953, 0.9413191076624636, 0.8971871968962173, 0.8385063045586809, 0.7875848690591658, 0.6750727449078564, 0.6483996120271581, 0.6086323957322988, 0.5984481086323957, 0.5775945683802134, 0.5664403491755577, 0.5484966052376333, 0.45053346265761396, 0.45295829291949563, 0.45635305528612996, 0.46023278370514065, 0.463627546071775, 0.46411251212415133, 0.46799224054316196, 0.4728419010669253, 0.475266731328807, 0.478176527643065, 0.4806013579049467, 0.48351115421920465, 0.8292919495635306, 0.49127061105722597, 0.4922405431619787, 0.49709020368574197, 0.5009699321047527, 0.5135790494665373, 0.5169738118331717, 0.5237633365664404, 0.5324927255092143, 0.5426770126091174, 0.5630455868089234, 0.5737148399612028], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_IS240.gap.json b/pfam_gap_rates/DDE_Tnp_IS240.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..009e98b29f43e55ed9cb5457a82c8a1a53a2ef6b
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_IS240.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_IS240", "n_seqs": 820, "length": 149, "gap_rates": [0.6414634146341464, 0.26097560975609757, 0.22682926829268293, 0.2048780487804878, 0.18536585365853658, 0.18048780487804877, 0.18048780487804877, 0.17682926829268292, 0.17317073170731706, 0.17073170731707318, 0.16341463414634147, 0.1597560975609756, 0.15121951219512195, 0.14878048780487804, 0.14878048780487804, 0.1475609756097561, 0.1378048780487805, 0.13170731707317074, 0.12926829268292683, 0.12804878048780488, 0.12682926829268293, 0.12560975609756098, 0.12195121951219512, 0.12195121951219512, 0.12317073170731707, 0.12073170731707317, 0.12073170731707317, 0.12073170731707317, 0.8548780487804878, 0.12073170731707317, 0.11829268292682926, 0.11707317073170732, 0.11829268292682926, 0.10975609756097561, 0.11097560975609756, 0.10853658536585366, 0.11219512195121951, 0.11341463414634147, 0.11219512195121951, 0.11463414634146342, 0.11463414634146342, 0.11341463414634147, 0.11219512195121951, 0.11341463414634147, 0.11463414634146342, 0.11585365853658537, 0.11951219512195121, 0.11707317073170732, 0.11707317073170732, 0.11463414634146342, 0.11585365853658537, 0.11829268292682926, 0.11585365853658537, 0.11829268292682926, 0.12560975609756098, 0.4841463414634146, 0.8963414634146342, 0.8, 0.1402439024390244, 0.11829268292682926, 0.11341463414634147, 0.12439024390243902, 0.11707317073170732, 0.10975609756097561, 0.1024390243902439, 0.1024390243902439, 0.1024390243902439, 0.10365853658536585, 0.10365853658536585, 0.1048780487804878, 0.11341463414634147, 0.1073170731707317, 0.10853658536585366, 0.10853658536585366, 0.10609756097560975, 0.1073170731707317, 0.10975609756097561, 0.10975609756097561, 0.11341463414634147, 0.11463414634146342, 0.11829268292682926, 0.4548780487804878, 0.5292682926829269, 0.5207317073170732, 0.5487804878048781, 0.526829268292683, 0.901219512195122, 0.9085365853658537, 0.9317073170731708, 0.95, 0.9317073170731708, 0.9097560975609756, 0.901219512195122, 0.901219512195122, 0.47073170731707314, 0.23902439024390243, 0.17926829268292682, 0.15365853658536585, 0.14390243902439023, 0.13414634146341464, 0.1329268292682927, 0.13658536585365855, 0.13414634146341464, 0.13658536585365855, 0.17073170731707318, 0.12804878048780488, 0.12926829268292683, 0.12804878048780488, 0.12195121951219512, 0.12317073170731707, 0.12195121951219512, 0.12682926829268293, 0.12804878048780488, 0.13170731707317074, 0.13414634146341464, 0.13658536585365855, 0.14390243902439023, 0.14512195121951219, 0.1475609756097561, 0.16219512195121952, 0.20121951219512196, 0.2048780487804878, 0.19878048780487806, 0.17317073170731706, 0.17073170731707318, 0.17073170731707318, 0.1719512195121951, 0.17682926829268292, 0.18048780487804877, 0.18414634146341463, 0.18414634146341463, 0.18902439024390244, 0.19390243902439025, 0.19146341463414634, 0.19390243902439025, 0.1951219512195122, 0.19878048780487806, 0.20243902439024392, 0.20365853658536584, 0.21585365853658536, 0.2280487804878049, 0.23414634146341465, 0.23780487804878048, 0.24634146341463414, 0.25609756097560976, 0.30365853658536585, 0.348780487804878, 0.4195121951219512, 0.5768292682926829], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DGOK.gap.json b/pfam_gap_rates/DGOK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5bf091b6230bcf941e3fe6804d50b6c7ac281b61
--- /dev/null
+++ b/pfam_gap_rates/DGOK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DLIC.gap.json b/pfam_gap_rates/DLIC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f4f455f42194ef8adc7fee789c36b72def13ec2
--- /dev/null
+++ b/pfam_gap_rates/DLIC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DM13.gap.json b/pfam_gap_rates/DM13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6836f5132a54d384d47293ef64756bf250006b82
--- /dev/null
+++ b/pfam_gap_rates/DM13.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_binding_1.gap.json b/pfam_gap_rates/DNA_binding_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e631618910016d8ded8186ca5086d775f3e8a703
--- /dev/null
+++ b/pfam_gap_rates/DNA_binding_1.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_binding_1", "n_seqs": 3545, "length": 92, "gap_rates": [0.48801128349788436, 0.19802538787023977, 0.1472496473906911, 0.08349788434414669, 0.05867418899858956, 0.044851904090267986, 0.04062059238363893, 0.031029619181946404, 0.0231311706629055, 0.02059238363892807, 0.019464033850493653, 0.01918194640338505, 0.018053596614950634, 0.01777150916784203, 0.01777150916784203, 0.017489421720733426, 0.016361071932299014, 0.01607898448519041, 0.012693935119887164, 0.012411847672778562, 0.012411847672778562, 0.011001410437235543, 0.010719322990126939, 0.010437235543018336, 0.010719322990126939, 0.010719322990126939, 0.010437235543018336, 0.00930888575458392, 0.009026798307475317, 0.1610719322990127, 0.9100141043723554, 0.9176304654442877, 0.9244005641748942, 0.9117066290550071, 0.8916784203102962, 0.10493653032440056, 0.00930888575458392, 0.009873060648801129, 0.010437235543018336, 0.010437235543018336, 0.010155148095909733, 0.010719322990126939, 0.010437235543018336, 0.010437235543018336, 0.010155148095909733, 0.009590973201692525, 0.008744710860366713, 0.011283497884344146, 0.076163610719323, 0.08519040902679831, 0.024259520451339917, 0.010155148095909733, 0.008744710860366713, 0.009026798307475317, 0.007898448519040903, 0.008180535966149507, 0.00846262341325811, 0.008744710860366713, 0.008744710860366713, 0.008744710860366713, 0.010155148095909733, 0.010437235543018336, 0.011283497884344146, 0.011283497884344146, 0.01156558533145275, 0.06770098730606489, 0.016643159379407618, 0.020874471086036673, 0.028490832157968972, 0.04710860366713681, 0.813540197461213, 0.7610719322990127, 0.06657263751763047, 0.07108603667136812, 0.922425952045134, 0.9492242595204513, 0.944428772919605, 0.9156558533145275, 0.048801128349788434, 0.04400564174894217, 0.04231311706629055, 0.042595204513399154, 0.042877291960507755, 0.04400564174894217, 0.045980253878702394, 0.0465444287729196, 0.04851904090267983, 0.05049365303244006, 0.05303244005641749, 0.05528913963328632, 0.21015514809590974, 0.6434414668547249], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_methylase.gap.json b/pfam_gap_rates/DNA_methylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..31c33f72d2dba6276a0d1c7ba0ecaa52c6758023
--- /dev/null
+++ b/pfam_gap_rates/DNA_methylase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_a_NI.gap.json b/pfam_gap_rates/DNA_pol3_a_NI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c706eb64d17351eb3ef4dbe5c83f3ef49824baa
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_a_NI.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_a_NI", "n_seqs": 350, "length": 75, "gap_rates": [0.4114285714285714, 0.13714285714285715, 0.10285714285714286, 0.06, 0.04857142857142857, 0.04, 0.037142857142857144, 0.03428571428571429, 0.03142857142857143, 0.02857142857142857, 0.02857142857142857, 0.02, 0.8485714285714285, 0.5228571428571429, 0.16285714285714287, 0.11714285714285715, 0.09714285714285714, 0.05714285714285714, 0.008571428571428572, 0.008571428571428572, 0.008571428571428572, 0.005714285714285714, 0.005714285714285714, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.0, 0.0, 0.0, 0.0, 0.002857142857142857, 0.002857142857142857, 0.0, 0.002857142857142857, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.005714285714285714, 0.011428571428571429, 0.017142857142857144, 0.02857142857142857, 0.03428571428571429, 0.037142857142857144, 0.045714285714285714, 0.04857142857142857, 0.06285714285714286, 0.07428571428571429, 0.08571428571428572, 0.09428571428571429, 0.9142857142857143, 0.11428571428571428, 0.14285714285714285, 0.1657142857142857, 0.2, 0.33714285714285713, 0.5285714285714286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_delt_C.gap.json b/pfam_gap_rates/DNA_pol3_delt_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0be3597ec0fbf4a35b0b1cb40f088416e91dd13a
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_delt_C.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_delt_C", "n_seqs": 202, "length": 129, "gap_rates": [0.8168316831683168, 0.3118811881188119, 0.18811881188118812, 0.15346534653465346, 0.09900990099009901, 0.0297029702970297, 0.01485148514851485, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.019801980198019802, 0.9356435643564357, 0.019801980198019802, 0.9257425742574258, 0.024752475247524754, 0.9207920792079208, 0.0297029702970297, 0.024752475247524754, 0.7128712871287128, 0.01485148514851485, 0.9356435643564357, 0.009900990099009901, 0.009900990099009901, 0.01485148514851485, 0.019801980198019802, 0.01485148514851485, 0.024752475247524754, 0.01485148514851485, 0.019801980198019802, 0.024752475247524754, 0.01485148514851485, 0.009900990099009901, 0.01485148514851485, 0.01485148514851485, 0.019801980198019802, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.024752475247524754, 0.024752475247524754, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.034653465346534656, 0.034653465346534656, 0.034653465346534656, 0.04455445544554455, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.07425742574257425, 0.12871287128712872, 0.1485148514851485, 0.15841584158415842, 0.14356435643564355, 0.1485148514851485, 0.15841584158415842, 0.16336633663366337, 0.16336633663366337, 0.16831683168316833, 0.16831683168316833, 0.18316831683168316, 0.21287128712871287, 0.21287128712871287, 0.22277227722772278, 0.25742574257425743, 0.2722772277227723, 0.35148514851485146, 0.3811881188118812, 0.4504950495049505, 0.6188118811881188, 0.7722772277227723, 0.8217821782178217, 0.8514851485148515, 0.900990099009901], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_delta_4.gap.json b/pfam_gap_rates/DNA_pol_delta_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28b4691ad19fa69ad2451a33657eb3a9cd772d04
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_delta_4.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol_delta_4", "n_seqs": 198, "length": 139, "gap_rates": [0.9343434343434344, 0.9191919191919192, 0.9141414141414141, 0.898989898989899, 0.8888888888888888, 0.8787878787878788, 0.8686868686868687, 0.8484848484848485, 0.8080808080808081, 0.803030303030303, 0.797979797979798, 0.7828282828282829, 0.7676767676767676, 0.7575757575757576, 0.7272727272727273, 0.7272727272727273, 0.7070707070707071, 0.702020202020202, 0.6868686868686869, 0.6565656565656566, 0.6414141414141414, 0.6262626262626263, 0.6161616161616161, 0.6212121212121212, 0.6313131313131313, 0.6111111111111112, 0.5808080808080808, 0.8535353535353535, 0.8838383838383839, 0.9141414141414141, 0.9242424242424242, 0.8939393939393939, 0.8686868686868687, 0.8232323232323232, 0.5555555555555556, 0.5454545454545454, 0.5404040404040404, 0.5252525252525253, 0.5252525252525253, 0.5151515151515151, 0.5050505050505051, 0.494949494949495, 0.5050505050505051, 0.5050505050505051, 0.494949494949495, 0.5050505050505051, 0.4797979797979798, 0.4696969696969697, 0.4696969696969697, 0.46464646464646464, 0.4595959595959596, 0.4595959595959596, 0.4595959595959596, 0.4595959595959596, 0.4444444444444444, 0.4444444444444444, 0.4444444444444444, 0.4494949494949495, 0.4393939393939394, 0.43434343434343436, 0.43434343434343436, 0.42424242424242425, 0.4292929292929293, 0.42424242424242425, 0.41919191919191917, 0.4292929292929293, 0.40404040404040403, 0.9040404040404041, 0.9343434343434344, 0.9393939393939394, 0.9141414141414141, 0.8686868686868687, 0.3888888888888889, 0.3888888888888889, 0.3787878787878788, 0.37373737373737376, 0.2878787878787879, 0.9191919191919192, 0.20707070707070707, 0.18686868686868688, 0.1717171717171717, 0.14646464646464646, 0.11616161616161616, 0.12121212121212122, 0.1111111111111111, 0.04040404040404041, 0.03535353535353535, 0.025252525252525252, 0.025252525252525252, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.010101010101010102, 0.015151515151515152, 0.015151515151515152, 0.010101010101010102, 0.010101010101010102, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.005050505050505051, 0.005050505050505051, 0.005050505050505051, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.025252525252525252, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.045454545454545456, 0.050505050505050504, 0.07575757575757576, 0.13636363636363635, 0.18181818181818182, 0.2474747474747475, 0.31313131313131315, 0.3888888888888889, 0.4595959595959596, 0.5505050505050505, 0.601010101010101, 0.6666666666666666, 0.7525252525252525, 0.8585858585858586], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_lambd_f.gap.json b/pfam_gap_rates/DNA_pol_lambd_f.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cea17eb3e6fe44ebde1a4f953b22e8b68c3505a6
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_lambd_f.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol_lambd_f", "n_seqs": 410, "length": 55, "gap_rates": [0.6439024390243903, 0.15121951219512195, 0.02926829268292683, 0.024390243902439025, 0.02195121951219512, 0.02195121951219512, 0.02195121951219512, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.00975609756097561, 0.004878048780487805, 0.004878048780487805, 0.8902439024390244, 0.007317073170731708, 0.007317073170731708, 0.007317073170731708, 0.004878048780487805, 0.0, 0.0, 0.0, 0.0, 0.0024390243902439024, 0.014634146341463415, 0.9463414634146341, 0.9390243902439024, 0.551219512195122, 0.6048780487804878, 0.4975609756097561, 0.23658536585365852, 0.04878048780487805, 0.046341463414634146, 0.04878048780487805, 0.05365853658536585, 0.05853658536585366, 0.05609756097560976, 0.05365853658536585, 0.05365853658536585, 0.05609756097560976, 0.05609756097560976, 0.06097560975609756, 0.06585365853658537, 0.06585365853658537, 0.07073170731707316, 0.07560975609756097, 0.08292682926829269, 0.08536585365853659, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_topoisoIV.gap.json b/pfam_gap_rates/DNA_topoisoIV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41437c3ad8e8c5a2718e54b93446b6907b12f4c0
--- /dev/null
+++ b/pfam_gap_rates/DNA_topoisoIV.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_topoisoIV", "n_seqs": 4424, "length": 508, "gap_rates": [0.07956600361663653, 0.0788878842676311, 0.07798372513562386, 0.07798372513562386, 0.07775768535262206, 0.07730560578661845, 0.09358047016274865, 0.07730560578661845, 0.07730560578661845, 0.07685352622061482, 0.07662748643761302, 0.07662748643761302, 0.07662748643761302, 0.07640144665461121, 0.0761754068716094, 0.07572332730560578, 0.07504520795660036, 0.07504520795660036, 0.07527124773960217, 0.07527124773960217, 0.07368896925858952, 0.0734629294755877, 0.07323688969258589, 0.19914104882459313, 0.22739602169981918, 0.10284810126582279, 0.12364376130198915, 0.08747739602169982, 0.16817359855334538, 0.07459312839059674, 0.07414104882459313, 0.07391500904159132, 0.07368896925858952, 0.0734629294755877, 0.07278481012658228, 0.07301084990958409, 0.07301084990958409, 0.07233273056057866, 0.07233273056057866, 0.07278481012658228, 0.07255877034358046, 0.07301084990958409, 0.8944394213381555, 0.89376130198915, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DNMT1-RFD.gap.json b/pfam_gap_rates/DNMT1-RFD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6398df45758813bf7ae54cf9b4da1e4a4b613e09
--- /dev/null
+++ b/pfam_gap_rates/DNMT1-RFD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DRIM.gap.json b/pfam_gap_rates/DRIM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8999081496213ddf2e3a02f2878263a5e45c6f0
--- /dev/null
+++ b/pfam_gap_rates/DRIM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DSHCT.gap.json b/pfam_gap_rates/DSHCT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0fc5da5264ec772a4bc2570b186b6b539dcfad65
--- /dev/null
+++ b/pfam_gap_rates/DSHCT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1011.gap.json b/pfam_gap_rates/DUF1011.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2dbf5734b7420561388e64d988011d8e86ea166a
--- /dev/null
+++ b/pfam_gap_rates/DUF1011.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1011", "n_seqs": 137, "length": 98, "gap_rates": [0.7518248175182481, 0.2846715328467153, 0.20437956204379562, 0.10218978102189781, 0.072992700729927, 0.058394160583941604, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.0364963503649635, 0.029197080291970802, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.029197080291970802, 0.051094890510948905, 0.058394160583941604, 0.06569343065693431, 0.08029197080291971, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.10948905109489052, 0.11678832116788321, 0.12408759124087591, 0.12408759124087591, 0.13138686131386862, 0.13138686131386862, 0.13138686131386862, 0.13138686131386862, 0.13138686131386862, 0.13138686131386862, 0.13138686131386862, 0.1386861313868613, 0.1386861313868613, 0.15328467153284672, 0.15328467153284672, 0.16058394160583941, 0.16058394160583941, 0.16058394160583941, 0.16058394160583941, 0.16058394160583941, 0.1678832116788321, 0.1678832116788321, 0.1678832116788321, 0.1897810218978102, 0.21897810218978103, 0.29927007299270075], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1080.gap.json b/pfam_gap_rates/DUF1080.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bc21f8d21dd5b586f1d8cf517d140b038cc8850
--- /dev/null
+++ b/pfam_gap_rates/DUF1080.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1093.gap.json b/pfam_gap_rates/DUF1093.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f71857ea597386c2ea294a9b0beed3c2026ca41
--- /dev/null
+++ b/pfam_gap_rates/DUF1093.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1093", "n_seqs": 171, "length": 101, "gap_rates": [0.7543859649122807, 0.4152046783625731, 0.30409356725146197, 0.15204678362573099, 0.10526315789473684, 0.04093567251461988, 0.029239766081871343, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.017543859649122806, 0.017543859649122806, 0.011695906432748537, 0.011695906432748537, 0.029239766081871343, 0.017543859649122806, 0.04093567251461988, 0.04678362573099415, 0.17543859649122806, 0.2222222222222222, 0.21052631578947367, 0.1871345029239766, 0.17543859649122806, 0.8596491228070176, 0.8654970760233918, 0.9473684210526315, 0.9415204678362573, 0.8596491228070176, 0.8187134502923976, 0.4444444444444444, 0.4444444444444444, 0.3684210526315789, 0.8830409356725146, 0.9415204678362573, 0.9239766081871345, 0.5263157894736842, 0.14619883040935672, 0.10526315789473684, 0.08187134502923976, 0.06432748538011696, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9122807017543859, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.7485380116959064, 0.9473684210526315, 0.9005847953216374, 0.7309941520467836, 0.011695906432748537, 0.8771929824561403, 0.8654970760233918, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.023391812865497075, 0.32748538011695905, 0.9298245614035088, 0.023391812865497075, 0.03508771929824561, 0.04093567251461988, 0.04678362573099415, 0.9473684210526315, 0.9473684210526315, 0.9415204678362573, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04678362573099415, 0.05263157894736842, 0.07017543859649122, 0.0935672514619883, 0.3567251461988304, 0.672514619883041], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1109.gap.json b/pfam_gap_rates/DUF1109.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a8aa5b4f006f4c7c8b8b1f6826febe6d438e6b0
--- /dev/null
+++ b/pfam_gap_rates/DUF1109.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1109", "n_seqs": 127, "length": 209, "gap_rates": [0.4015748031496063, 0.33858267716535434, 0.30708661417322836, 0.25984251968503935, 0.23622047244094488, 0.1968503937007874, 0.16535433070866143, 0.1732283464566929, 0.13385826771653545, 0.10236220472440945, 0.09448818897637795, 0.07874015748031496, 0.07874015748031496, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.07874015748031496, 0.49606299212598426, 0.33070866141732286, 0.11023622047244094, 0.08661417322834646, 0.07874015748031496, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.07086614173228346, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.07086614173228346, 0.07086614173228346, 0.9212598425196851, 0.8661417322834646, 0.06299212598425197, 0.06299212598425197, 0.07874015748031496, 0.07086614173228346, 0.06299212598425197, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.06299212598425197, 0.10236220472440945, 0.10236220472440945, 0.09448818897637795, 0.10236220472440945, 0.07874015748031496, 0.10236220472440945, 0.07086614173228346, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.09448818897637795, 0.08661417322834646, 0.07086614173228346, 0.07086614173228346, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.30708661417322836, 0.28346456692913385, 0.14173228346456693, 0.09448818897637795, 0.7795275590551181, 0.09448818897637795, 0.08661417322834646, 0.06299212598425197, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.07086614173228346, 0.07086614173228346, 0.08661417322834646, 0.09448818897637795, 0.8188976377952756, 0.07874015748031496, 0.06299212598425197, 0.06299212598425197, 0.07874015748031496, 0.8346456692913385, 0.16535433070866143, 0.11023622047244094, 0.07086614173228346, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.07086614173228346, 0.06299212598425197, 0.06299212598425197, 0.05511811023622047, 0.09448818897637795, 0.10236220472440945, 0.25984251968503935, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.06299212598425197, 0.06299212598425197, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.03937007874015748, 0.03937007874015748, 0.047244094488188976, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.047244094488188976, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.07086614173228346, 0.07874015748031496, 0.11023622047244094, 0.14173228346456693, 0.15748031496062992, 0.23622047244094488, 0.2992125984251969], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1115.gap.json b/pfam_gap_rates/DUF1115.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f853c07c852fe8737fb8cb5205ea523e7d04521
--- /dev/null
+++ b/pfam_gap_rates/DUF1115.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1115", "n_seqs": 518, "length": 168, "gap_rates": [0.8204633204633205, 0.34942084942084944, 0.11776061776061776, 0.07915057915057915, 0.04633204633204633, 0.0444015444015444, 0.0444015444015444, 0.0444015444015444, 0.04247104247104247, 0.04247104247104247, 0.03861003861003861, 0.03667953667953668, 0.03474903474903475, 0.03474903474903475, 0.03088803088803089, 0.02895752895752896, 0.02895752895752896, 0.02895752895752896, 0.02895752895752896, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02895752895752896, 0.02895752895752896, 0.02895752895752896, 0.02895752895752896, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.025096525096525095, 0.025096525096525095, 0.023166023166023165, 0.9401544401544402, 0.9054054054054054, 0.02702702702702703, 0.032818532818532815, 0.39768339768339767, 0.025096525096525095, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.021235521235521235, 0.023166023166023165, 0.023166023166023165, 0.021235521235521235, 0.3667953667953668, 0.025096525096525095, 0.02895752895752896, 0.02895752895752896, 0.02895752895752896, 0.02895752895752896, 0.03088803088803089, 0.03474903474903475, 0.0444015444015444, 0.052123552123552123, 0.9092664092664092, 0.6467181467181468, 0.33204633204633205, 0.7142857142857143, 0.44594594594594594, 0.5154440154440154, 0.5521235521235521, 0.6158301158301158, 0.581081081081081, 0.7200772200772201, 0.7374517374517374, 0.7548262548262549, 0.8146718146718147, 0.8745173745173745, 0.9073359073359073, 0.9285714285714286, 0.944015444015444, 0.9478764478764479, 0.9382239382239382, 0.9247104247104247, 0.888030888030888, 0.8494208494208494, 0.7760617760617761, 0.749034749034749, 0.7239382239382239, 0.7181467181467182, 0.6061776061776062, 0.7297297297297297, 0.6833976833976834, 0.667953667953668, 0.5193050193050193, 0.8513513513513513, 0.7123552123552124, 0.6428571428571429, 0.61003861003861, 0.581081081081081, 0.5482625482625483, 0.525096525096525, 0.5115830115830116, 0.5231660231660231, 0.49613899613899615, 0.416988416988417, 0.44594594594594594, 0.44015444015444016, 0.41505791505791506, 0.4594594594594595, 0.44015444015444016, 0.44594594594594594, 0.4305019305019305, 0.44594594594594594, 0.4111969111969112, 0.4189189189189189, 0.416988416988417, 0.40540540540540543, 0.3764478764478765, 0.3687258687258687, 0.3590733590733591, 0.3552123552123552, 0.3552123552123552, 0.3552123552123552, 0.36486486486486486, 0.36486486486486486, 0.36293436293436293, 0.36293436293436293, 0.35714285714285715, 0.35714285714285715, 0.37065637065637064, 0.3687258687258687, 0.36293436293436293, 0.361003861003861, 0.36293436293436293, 0.37065637065637064, 0.37065637065637064, 0.3687258687258687, 0.36293436293436293, 0.36293436293436293, 0.36293436293436293, 0.36293436293436293, 0.36293436293436293, 0.361003861003861, 0.36293436293436293, 0.36293436293436293, 0.36293436293436293, 0.36293436293436293, 0.36293436293436293, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.37065637065637064, 0.44594594594594594, 0.3861003861003861, 0.3745173745173745, 0.3745173745173745, 0.3803088803088803, 0.3803088803088803, 0.38996138996138996, 0.41505791505791506, 0.5154440154440154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1116.gap.json b/pfam_gap_rates/DUF1116.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e70ada1d0309cb24105c2cd699f79832488f5826
--- /dev/null
+++ b/pfam_gap_rates/DUF1116.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1116", "n_seqs": 139, "length": 223, "gap_rates": [0.1079136690647482, 0.04316546762589928, 0.02158273381294964, 0.014388489208633094, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.014388489208633094, 0.014388489208633094, 0.007194244604316547, 0.014388489208633094, 0.014388489208633094, 0.920863309352518, 0.02877697841726619, 0.02877697841726619, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.014388489208633094, 0.014388489208633094, 0.9496402877697842, 0.014388489208633094, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.014388489208633094, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.60431654676259, 0.05755395683453238, 0.08633093525179857, 0.935251798561151, 0.935251798561151, 0.935251798561151, 0.935251798561151, 0.02158273381294964, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.02877697841726619, 0.02158273381294964, 0.014388489208633094, 0.014388489208633094, 0.02158273381294964, 0.02877697841726619, 0.03597122302158273, 0.04316546762589928, 0.04316546762589928, 0.07194244604316546, 0.1510791366906475, 0.14388489208633093, 0.10071942446043165, 0.09352517985611511, 0.04316546762589928, 0.04316546762589928, 0.03597122302158273, 0.02877697841726619, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02877697841726619, 0.03597122302158273, 0.050359712230215826, 0.03597122302158273, 0.03597122302158273, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02877697841726619, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.05755395683453238, 0.8920863309352518, 0.02877697841726619, 0.02877697841726619, 0.02877697841726619, 0.02877697841726619, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02877697841726619, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.04316546762589928, 0.04316546762589928, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1146.gap.json b/pfam_gap_rates/DUF1146.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c6d1e6c20b830d27b9c4f11708c30c59c543db8
--- /dev/null
+++ b/pfam_gap_rates/DUF1146.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1146", "n_seqs": 221, "length": 48, "gap_rates": [0.3393665158371041, 0.14479638009049775, 0.08597285067873303, 0.027149321266968326, 0.01809954751131222, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06334841628959276, 0.013574660633484163, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00904977375565611, 0.01809954751131222, 0.027149321266968326, 0.03619909502262444, 0.06787330316742081, 0.07239819004524888, 0.2171945701357466], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1174.gap.json b/pfam_gap_rates/DUF1174.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14355736581eb4d6ec6798e93129e5ba40445135
--- /dev/null
+++ b/pfam_gap_rates/DUF1174.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1174", "n_seqs": 127, "length": 25, "gap_rates": [0.47244094488188976, 0.3700787401574803, 0.33858267716535434, 0.33858267716535434, 0.33070866141732286, 0.33070866141732286, 0.33070866141732286, 0.33070866141732286, 0.33070866141732286, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007874015748031496, 0.007874015748031496, 0.015748031496062992, 0.03937007874015748, 0.07086614173228346, 0.12598425196850394, 0.15748031496062992, 0.16535433070866143, 0.36220472440944884], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1192.gap.json b/pfam_gap_rates/DUF1192.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e9406741cc0b1957d4cda33e1c3c905da77da1f
--- /dev/null
+++ b/pfam_gap_rates/DUF1192.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1192", "n_seqs": 105, "length": 61, "gap_rates": [0.3904761904761905, 0.18095238095238095, 0.14285714285714285, 0.14285714285714285, 0.11428571428571428, 0.10476190476190476, 0.09523809523809523, 0.08571428571428572, 0.06666666666666667, 0.7142857142857143, 0.7714285714285715, 0.5714285714285714, 0.2571428571428571, 0.1619047619047619, 0.0380952380952381, 0.02857142857142857, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009523809523809525, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.09523809523809523], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1249.gap.json b/pfam_gap_rates/DUF1249.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42721dbbfa5b8b81106e954769ec4c9b7ddb4566
--- /dev/null
+++ b/pfam_gap_rates/DUF1249.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1249", "n_seqs": 147, "length": 124, "gap_rates": [0.38095238095238093, 0.14965986394557823, 0.10884353741496598, 0.10884353741496598, 0.10884353741496598, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.2585034013605442, 0.14285714285714285, 0.10204081632653061, 0.09523809523809523, 0.09523809523809523, 0.08843537414965986, 0.09523809523809523, 0.09523809523809523, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.7551020408163265, 0.8231292517006803, 0.7755102040816326, 0.7482993197278912, 0.2925170068027211, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.05442176870748299, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.04081632653061224, 0.04081632653061224, 0.22448979591836735, 0.891156462585034, 0.9047619047619048, 0.5850340136054422, 0.05442176870748299, 0.034013605442176874, 0.027210884353741496, 0.027210884353741496, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.006802721088435374, 0.006802721088435374, 0.0, 0.0, 0.04081632653061224, 0.034013605442176874, 0.02040816326530612, 0.013605442176870748, 0.013605442176870748, 0.006802721088435374, 0.8979591836734694, 0.013605442176870748, 0.013605442176870748, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.013605442176870748, 0.02040816326530612, 0.013605442176870748, 0.013605442176870748, 0.1564625850340136, 0.14285714285714285, 0.11564625850340136, 0.10204081632653061, 0.09523809523809523, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.02040816326530612, 0.027210884353741496, 0.034013605442176874, 0.034013605442176874, 0.04081632653061224, 0.047619047619047616, 0.061224489795918366, 0.19047619047619047, 0.7687074829931972], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1304.gap.json b/pfam_gap_rates/DUF1304.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fabbdaa24e71d7c360096a943404000b137b312
--- /dev/null
+++ b/pfam_gap_rates/DUF1304.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1308.gap.json b/pfam_gap_rates/DUF1308.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f8547835b23b5a4a73094d7057bee5655643223
--- /dev/null
+++ b/pfam_gap_rates/DUF1308.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1385.gap.json b/pfam_gap_rates/DUF1385.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..171e54ceb8d9441321de56ad510cf962c65b8019
--- /dev/null
+++ b/pfam_gap_rates/DUF1385.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1447.gap.json b/pfam_gap_rates/DUF1447.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7cf3863deea674eb741ac56ea33df88fce565f38
--- /dev/null
+++ b/pfam_gap_rates/DUF1447.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1447", "n_seqs": 157, "length": 75, "gap_rates": [0.050955414012738856, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.9490445859872612, 0.9490445859872612, 0.9490445859872612, 0.9490445859872612, 0.9490445859872612, 0.9490445859872612, 0.006369426751592357, 0.0, 0.0, 0.0, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.9490445859872612, 0.43312101910828027, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.03184713375796178, 0.3885350318471338], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1485.gap.json b/pfam_gap_rates/DUF1485.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5e8d5578c76c70f2cc2b8c9a5c9215f6743383d
--- /dev/null
+++ b/pfam_gap_rates/DUF1485.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1488.gap.json b/pfam_gap_rates/DUF1488.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65edeb8f4ee470100bb1e05a7737e315fb1e3e32
--- /dev/null
+++ b/pfam_gap_rates/DUF1488.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1488", "n_seqs": 119, "length": 85, "gap_rates": [0.3277310924369748, 0.2773109243697479, 0.2689075630252101, 0.2605042016806723, 0.226890756302521, 0.2184873949579832, 0.6134453781512605, 0.16806722689075632, 0.15126050420168066, 0.14285714285714285, 0.12605042016806722, 0.11764705882352941, 0.09243697478991597, 0.06722689075630252, 0.07563025210084033, 0.03361344537815126, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.07563025210084033, 0.058823529411764705, 0.05042016806722689, 0.05042016806722689, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.06722689075630252, 0.15966386554621848, 0.2689075630252101, 0.9495798319327731, 0.8739495798319328, 0.06722689075630252, 0.04201680672268908, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.025210084033613446, 0.04201680672268908, 0.21008403361344538, 0.09243697478991597, 0.12605042016806722, 0.14285714285714285, 0.2184873949579832, 0.23529411764705882, 0.5546218487394958, 0.5546218487394958, 0.5546218487394958, 0.36134453781512604, 0.40336134453781514, 0.6050420168067226, 0.8487394957983193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1576.gap.json b/pfam_gap_rates/DUF1576.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3c4dbf0788d09ecc570366a88cf7ec0664117c2
--- /dev/null
+++ b/pfam_gap_rates/DUF1576.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1576", "n_seqs": 174, "length": 178, "gap_rates": [0.7298850574712644, 0.46551724137931033, 0.25862068965517243, 0.1206896551724138, 0.06896551724137931, 0.04597701149425287, 0.034482758620689655, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.06896551724137931, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.017241379310344827, 0.011494252873563218, 0.04597701149425287, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.005747126436781609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011494252873563218, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.5402298850574713, 0.5287356321839081, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.5402298850574713, 0.5344827586206896, 0.5229885057471264, 0.5229885057471264, 0.5172413793103449, 0.5114942528735632, 0.5287356321839081, 0.5172413793103449, 0.5977011494252874, 0.5344827586206896, 0.5172413793103449, 0.5057471264367817, 0.5057471264367817, 0.5057471264367817, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.017241379310344827, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.040229885057471264, 0.13218390804597702], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1618.gap.json b/pfam_gap_rates/DUF1618.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc6db81e8972846789288d2fe0fa410559e53f48
--- /dev/null
+++ b/pfam_gap_rates/DUF1618.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1618", "n_seqs": 376, "length": 230, "gap_rates": [0.08776595744680851, 0.0398936170212766, 0.0398936170212766, 0.0398936170212766, 0.0398936170212766, 0.0398936170212766, 0.0398936170212766, 0.03723404255319149, 0.031914893617021274, 0.031914893617021274, 0.02925531914893617, 0.02925531914893617, 0.031914893617021274, 0.34574468085106386, 0.7340425531914894, 0.851063829787234, 0.9228723404255319, 0.9468085106382979, 0.8936170212765957, 0.7845744680851063, 0.4734042553191489, 0.12234042553191489, 0.02925531914893617, 0.02925531914893617, 0.026595744680851064, 0.47074468085106386, 0.8058510638297872, 0.39893617021276595, 0.023936170212765957, 0.023936170212765957, 0.02127659574468085, 0.02127659574468085, 0.018617021276595744, 0.015957446808510637, 0.013297872340425532, 0.031914893617021274, 0.013297872340425532, 0.026595744680851064, 0.02925531914893617, 0.031914893617021274, 0.03723404255319149, 0.05319148936170213, 0.07446808510638298, 0.22606382978723405, 0.47074468085106386, 0.7313829787234043, 0.848404255319149, 0.8909574468085106, 0.9361702127659575, 0.949468085106383, 0.949468085106383, 0.9414893617021277, 0.9202127659574468, 0.8856382978723404, 0.773936170212766, 0.6196808510638298, 0.3404255319148936, 0.14361702127659576, 0.05851063829787234, 0.0398936170212766, 0.03723404255319149, 0.031914893617021274, 0.02925531914893617, 0.023936170212765957, 0.005319148936170213, 0.010638297872340425, 0.007978723404255319, 0.005319148936170213, 0.005319148936170213, 0.007978723404255319, 0.007978723404255319, 0.8404255319148937, 0.6808510638297872, 0.010638297872340425, 0.2473404255319149, 0.8563829787234043, 0.7925531914893617, 0.1702127659574468, 0.010638297872340425, 0.013297872340425532, 0.015957446808510637, 0.015957446808510637, 0.013297872340425532, 0.010638297872340425, 0.125, 0.17287234042553193, 0.31117021276595747, 0.4095744680851064, 0.5957446808510638, 0.723404255319149, 0.7952127659574468, 0.8351063829787234, 0.8670212765957447, 0.8776595744680851, 0.8936170212765957, 0.9175531914893617, 0.9308510638297872, 0.9441489361702128, 0.949468085106383, 0.949468085106383, 0.9308510638297872, 0.9281914893617021, 0.9042553191489362, 0.8803191489361702, 0.8696808510638298, 0.8617021276595744, 0.8085106382978723, 0.75, 0.6648936170212766, 0.5106382978723404, 0.375, 0.24468085106382978, 0.14893617021276595, 0.10638297872340426, 0.02127659574468085, 0.6941489361702128, 0.7101063829787234, 0.13031914893617022, 0.39893617021276595, 0.550531914893617, 0.7074468085106383, 0.7792553191489362, 0.8377659574468085, 0.8882978723404256, 0.9148936170212766, 0.9095744680851063, 0.8723404255319149, 0.8138297872340425, 0.7313829787234043, 0.6356382978723404, 0.5212765957446809, 0.3696808510638298, 0.17287234042553193, 0.1196808510638298, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02925531914893617, 0.023936170212765957, 0.02925531914893617, 0.7526595744680851, 0.9095744680851063, 0.9414893617021277, 0.8297872340425532, 0.6968085106382979, 0.3058510638297872, 0.5877659574468085, 0.32180851063829785, 0.10904255319148937, 0.10106382978723404, 0.08244680851063829, 0.03723404255319149, 0.031914893617021274, 0.031914893617021274, 0.03723404255319149, 0.10638297872340426, 0.0425531914893617, 0.04521276595744681, 0.8351063829787234, 0.09574468085106383, 0.05053191489361702, 0.05851063829787234, 0.05851063829787234, 0.05851063829787234, 0.05851063829787234, 0.05851063829787234, 0.05851063829787234, 0.6329787234042553, 0.6728723404255319, 0.7021276595744681, 0.7686170212765957, 0.8058510638297872, 0.8909574468085106, 0.9308510638297872, 0.8271276595744681, 0.7978723404255319, 0.75, 0.6914893617021277, 0.6542553191489362, 0.6303191489361702, 0.07446808510638298, 0.5319148936170213, 0.6170212765957447, 0.7021276595744681, 0.675531914893617, 0.5664893617021277, 0.4601063829787234, 0.32180851063829785, 0.3537234042553192, 0.34308510638297873, 0.35106382978723405, 0.36436170212765956, 0.8563829787234043, 0.35106382978723405, 0.4228723404255319, 0.38563829787234044, 0.7207446808510638, 0.598404255319149, 0.3962765957446808, 0.7606382978723404, 0.7606382978723404, 0.7606382978723404, 0.7632978723404256, 0.7712765957446809, 0.7978723404255319, 0.9069148936170213, 0.9361702127659575, 0.8218085106382979, 0.7845744680851063, 0.7712765957446809, 0.7632978723404256, 0.7606382978723404, 0.7606382978723404, 0.7606382978723404, 0.3723404255319149, 0.19148936170212766, 0.17287234042553193, 0.14361702127659576, 0.15425531914893617, 0.1622340425531915, 0.7712765957446809, 0.18882978723404256, 0.44680851063829785, 0.22074468085106383, 0.22606382978723405, 0.22340425531914893, 0.23404255319148937, 0.2473404255319149, 0.26063829787234044, 0.3324468085106383], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1634.gap.json b/pfam_gap_rates/DUF1634.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26db4c15ca441e0c62b1bfc7b6c2cd129356a96d
--- /dev/null
+++ b/pfam_gap_rates/DUF1634.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1634", "n_seqs": 190, "length": 121, "gap_rates": [0.22631578947368422, 0.15263157894736842, 0.12105263157894737, 0.1, 0.1, 0.08947368421052632, 0.08947368421052632, 0.08947368421052632, 0.08947368421052632, 0.08947368421052632, 0.08947368421052632, 0.08947368421052632, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.07894736842105263, 0.07894736842105263, 0.17894736842105263, 0.7736842105263158, 0.8105263157894737, 0.8263157894736842, 0.8631578947368421, 0.8947368421052632, 0.9105263157894737, 0.8789473684210526, 0.8315789473684211, 0.8263157894736842, 0.7947368421052632, 0.7578947368421053, 0.22105263157894736, 0.1736842105263158, 0.7684210526315789, 0.7789473684210526, 0.8263157894736842, 0.9, 0.8421052631578947, 0.8105263157894737, 0.7736842105263158, 0.7526315789473684, 0.1368421052631579, 0.11578947368421053, 0.1, 0.09473684210526316, 0.09473684210526316, 0.09473684210526316, 0.09473684210526316, 0.09473684210526316, 0.09473684210526316, 0.08421052631578947, 0.08421052631578947, 0.07368421052631578, 0.06842105263157895, 0.07368421052631578, 0.06842105263157895, 0.07368421052631578, 0.05789473684210526, 0.05789473684210526, 0.04736842105263158, 0.04736842105263158, 0.03684210526315789, 0.03684210526315789, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.005263157894736842, 0.005263157894736842, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.021052631578947368, 0.021052631578947368, 0.06315789473684211, 0.08947368421052632, 0.3631578947368421], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1647.gap.json b/pfam_gap_rates/DUF1647.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..874b715918bcb0a8cc2c2420498cffe0e9e6c12f
--- /dev/null
+++ b/pfam_gap_rates/DUF1647.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1647", "n_seqs": 110, "length": 145, "gap_rates": [0.7272727272727273, 0.7272727272727273, 0.6454545454545455, 0.6727272727272727, 0.6545454545454545, 0.6454545454545455, 0.7909090909090909, 0.7454545454545455, 0.6181818181818182, 0.6181818181818182, 0.6, 0.6, 0.5454545454545454, 0.5363636363636364, 0.5272727272727272, 0.5181818181818182, 0.509090909090909, 0.509090909090909, 0.509090909090909, 0.509090909090909, 0.5181818181818182, 0.5181818181818182, 0.4909090909090909, 0.4909090909090909, 0.4909090909090909, 0.4818181818181818, 0.4818181818181818, 0.4818181818181818, 0.4727272727272727, 0.4727272727272727, 0.4727272727272727, 0.4727272727272727, 0.45454545454545453, 0.45454545454545453, 0.45454545454545453, 0.44545454545454544, 0.42727272727272725, 0.42727272727272725, 0.42727272727272725, 0.42727272727272725, 0.43636363636363634, 0.44545454545454544, 0.44545454545454544, 0.42727272727272725, 0.4818181818181818, 0.9181818181818182, 0.4909090909090909, 0.43636363636363634, 0.41818181818181815, 0.43636363636363634, 0.41818181818181815, 0.42727272727272725, 0.42727272727272725, 0.4090909090909091, 0.41818181818181815, 0.5818181818181818, 0.5636363636363636, 0.4, 0.33636363636363636, 0.2636363636363636, 0.23636363636363636, 0.22727272727272727, 0.2, 0.17272727272727273, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.11818181818181818, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.11818181818181818, 0.12727272727272726, 0.11818181818181818, 0.13636363636363635, 0.11818181818181818, 0.10909090909090909, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.1, 0.10909090909090909, 0.11818181818181818, 0.10909090909090909, 0.09090909090909091, 0.09090909090909091, 0.8727272727272727, 0.8818181818181818, 0.7727272727272727, 0.11818181818181818, 0.1, 0.08181818181818182, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.1, 0.1, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.11818181818181818, 0.11818181818181818, 0.12727272727272726, 0.12727272727272726, 0.12727272727272726, 0.15454545454545454, 0.16363636363636364, 0.18181818181818182, 0.4727272727272727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1676.gap.json b/pfam_gap_rates/DUF1676.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b700c4221f52db90c4cc14017d43b90059c0306
--- /dev/null
+++ b/pfam_gap_rates/DUF1676.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1676", "n_seqs": 510, "length": 212, "gap_rates": [0.5843137254901961, 0.3784313725490196, 0.3764705882352941, 0.3784313725490196, 0.3431372549019608, 0.7784313725490196, 0.3196078431372549, 0.30392156862745096, 0.29411764705882354, 0.2901960784313726, 0.28627450980392155, 0.27647058823529413, 0.2725490196078431, 0.2647058823529412, 0.2549019607843137, 0.24901960784313726, 0.24705882352941178, 0.2372549019607843, 0.23529411764705882, 0.23333333333333334, 0.23333333333333334, 0.23137254901960785, 0.23529411764705882, 0.23333333333333334, 0.22941176470588234, 0.23921568627450981, 0.2411764705882353, 0.8647058823529412, 0.23529411764705882, 0.22745098039215686, 0.22549019607843138, 0.22549019607843138, 0.2235294117647059, 0.2372549019607843, 0.2372549019607843, 0.2196078431372549, 0.21568627450980393, 0.21568627450980393, 0.21568627450980393, 0.21568627450980393, 0.21372549019607842, 0.21568627450980393, 0.21764705882352942, 0.21764705882352942, 0.24705882352941178, 0.2901960784313726, 0.3509803921568627, 0.5117647058823529, 0.5509803921568628, 0.5980392156862745, 0.7627450980392156, 0.8235294117647058, 0.8941176470588236, 0.9392156862745098, 0.8529411764705882, 0.7901960784313725, 0.7254901960784313, 0.47058823529411764, 0.46862745098039216, 0.4235294117647059, 0.39215686274509803, 0.3588235294117647, 0.32941176470588235, 0.32745098039215687, 0.3254901960784314, 0.5470588235294118, 0.3352941176470588, 0.307843137254902, 0.27647058823529413, 0.2529411764705882, 0.28431372549019607, 0.24509803921568626, 0.9058823529411765, 0.9450980392156862, 0.9254901960784314, 0.8450980392156863, 0.20980392156862746, 0.2, 0.18823529411764706, 0.17450980392156862, 0.17647058823529413, 0.1568627450980392, 0.1450980392156863, 0.1450980392156863, 0.14313725490196078, 0.14313725490196078, 0.1392156862745098, 0.1392156862745098, 0.13137254901960785, 0.12941176470588237, 0.12745098039215685, 0.12549019607843137, 0.12156862745098039, 0.11960784313725491, 0.11764705882352941, 0.11568627450980393, 0.11568627450980393, 0.11372549019607843, 0.11568627450980393, 0.11764705882352941, 0.11176470588235295, 0.11176470588235295, 0.10980392156862745, 0.20784313725490197, 0.17254901960784313, 0.5862745098039216, 0.42745098039215684, 0.44313725490196076, 0.3588235294117647, 0.30196078431372547, 0.24901960784313726, 0.27647058823529413, 0.3176470588235294, 0.3235294117647059, 0.30392156862745096, 0.29411764705882354, 0.29411764705882354, 0.2980392156862745, 0.4980392156862745, 0.4843137254901961, 0.4823529411764706, 0.3568627450980392, 0.5019607843137255, 0.5352941176470588, 0.5980392156862745, 0.6745098039215687, 0.7392156862745098, 0.8058823529411765, 0.8745098039215686, 0.9156862745098039, 0.9450980392156862, 0.8941176470588236, 0.8450980392156863, 0.7784313725490196, 0.707843137254902, 0.6450980392156863, 0.5627450980392157, 0.515686274509804, 0.48627450980392156, 0.07647058823529412, 0.08235294117647059, 0.06862745098039216, 0.8941176470588236, 0.9019607843137255, 0.9254901960784314, 0.9372549019607843, 0.9098039215686274, 0.8980392156862745, 0.884313725490196, 0.5, 0.43529411764705883, 0.4176470588235294, 0.9098039215686274, 0.8411764705882353, 0.6019607843137255, 0.5294117647058824, 0.46078431372549017, 0.4, 0.3235294117647059, 0.2607843137254902, 0.1, 0.06862745098039216, 0.06666666666666667, 0.06862745098039216, 0.06470588235294118, 0.058823529411764705, 0.058823529411764705, 0.060784313725490195, 0.06274509803921569, 0.08431372549019608, 0.08431372549019608, 0.08431372549019608, 0.8392156862745098, 0.08431372549019608, 0.0803921568627451, 0.056862745098039215, 0.054901960784313725, 0.054901960784313725, 0.056862745098039215, 0.11176470588235295, 0.07058823529411765, 0.060784313725490195, 0.060784313725490195, 0.06274509803921569, 0.17450980392156862, 0.08235294117647059, 0.06666666666666667, 0.07254901960784314, 0.07254901960784314, 0.07254901960784314, 0.07450980392156863, 0.08627450980392157, 0.09215686274509804, 0.09411764705882353, 0.12745098039215685, 0.08235294117647059, 0.08431372549019608, 0.08431372549019608, 0.08235294117647059, 0.08235294117647059, 0.08431372549019608, 0.08823529411764706, 0.09215686274509804, 0.09607843137254903, 0.12549019607843137, 0.1392156862745098, 0.14705882352941177, 0.16862745098039217, 0.19411764705882353, 0.22549019607843138, 0.27058823529411763, 0.45098039215686275], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1687.gap.json b/pfam_gap_rates/DUF1687.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d398c705b409d368551170966e1f91488b27d0f
--- /dev/null
+++ b/pfam_gap_rates/DUF1687.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1687", "n_seqs": 119, "length": 187, "gap_rates": [0.4369747899159664, 0.4117647058823529, 0.3697478991596639, 0.3445378151260504, 0.6470588235294118, 0.21008403361344538, 0.18487394957983194, 0.1092436974789916, 0.06722689075630252, 0.058823529411764705, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.09243697478991597, 0.12605042016806722, 0.2689075630252101, 0.2689075630252101, 0.25210084033613445, 0.42857142857142855, 0.453781512605042, 0.46218487394957986, 0.5210084033613446, 0.5630252100840336, 0.8487394957983193, 0.8823529411764706, 0.9159663865546218, 0.9159663865546218, 0.9159663865546218, 0.907563025210084, 0.8739495798319328, 0.7899159663865546, 0.5210084033613446, 0.4957983193277311, 0.46218487394957986, 0.453781512605042, 0.40336134453781514, 0.226890756302521, 0.20168067226890757, 0.12605042016806722, 0.05042016806722689, 0.01680672268907563, 0.0, 0.0, 0.0, 0.0, 0.9159663865546218, 0.7394957983193278, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.0, 0.0, 0.11764705882352941, 0.09243697478991597, 0.8487394957983193, 0.9327731092436975, 0.680672268907563, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.04201680672268908, 0.01680672268907563, 0.5630252100840336, 0.8319327731092437, 0.8571428571428571, 0.865546218487395, 0.8823529411764706, 0.8823529411764706, 0.907563025210084, 0.907563025210084, 0.9243697478991597, 0.9243697478991597, 0.9327731092436975, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9243697478991597, 0.9243697478991597, 0.9243697478991597, 0.907563025210084, 0.8907563025210085, 0.8823529411764706, 0.8739495798319328, 0.865546218487395, 0.8319327731092437, 0.8235294117647058, 0.01680672268907563, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.6050420168067226, 0.5882352941176471, 0.5630252100840336, 0.5378151260504201, 0.5294117647058824, 0.5210084033613446, 0.5210084033613446, 0.5210084033613446, 0.5126050420168067, 0.5462184873949579, 0.680672268907563, 0.6638655462184874, 0.025210084033613446, 0.9327731092436975, 0.9327731092436975, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.008403361344537815, 0.907563025210084, 0.907563025210084, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.13445378151260504, 0.40336134453781514, 0.8235294117647058], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1694.gap.json b/pfam_gap_rates/DUF1694.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d134384b72f9f61e398981bbf0d640077762ba8
--- /dev/null
+++ b/pfam_gap_rates/DUF1694.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1694", "n_seqs": 155, "length": 128, "gap_rates": [0.7806451612903226, 0.25806451612903225, 0.14838709677419354, 0.10967741935483871, 0.07741935483870968, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.05806451612903226, 0.06451612903225806, 0.05806451612903226, 0.9419354838709677, 0.05806451612903226, 0.05806451612903226, 0.05161290322580645, 0.05161290322580645, 0.05161290322580645, 0.03225806451612903, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.8903225806451613, 0.8903225806451613, 0.025806451612903226, 0.012903225806451613, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.08387096774193549, 0.567741935483871, 0.9032258064516129, 0.9161290322580645, 0.9161290322580645, 0.9161290322580645, 0.6258064516129033, 0.5225806451612903, 0.0064516129032258064, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.025806451612903226, 0.05161290322580645, 0.9032258064516129, 0.07096774193548387, 0.07741935483870968, 0.08387096774193549, 0.09032258064516129, 0.10967741935483871, 0.12903225806451613, 0.16774193548387098, 0.25161290322580643, 0.7419354838709677], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1726.gap.json b/pfam_gap_rates/DUF1726.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ddfe18506ab7b159a848b43611e407eb1e3827f
--- /dev/null
+++ b/pfam_gap_rates/DUF1726.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1726", "n_seqs": 457, "length": 97, "gap_rates": [0.23413566739606126, 0.1925601750547046, 0.12910284463894967, 0.09846827133479212, 0.05032822757111598, 0.028446389496717725, 0.019693654266958426, 0.015317286652078774, 0.01312910284463895, 0.01312910284463895, 0.01312910284463895, 0.01312910284463895, 0.01312910284463895, 0.0087527352297593, 0.0087527352297593, 0.01312910284463895, 0.01312910284463895, 0.01312910284463895, 0.006564551422319475, 0.00437636761487965, 0.0087527352297593, 0.0087527352297593, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.0087527352297593, 0.0087527352297593, 0.00437636761487965, 0.00437636761487965, 0.00437636761487965, 0.006564551422319475, 0.010940919037199124, 0.010940919037199124, 0.010940919037199124, 0.015317286652078774, 0.0175054704595186, 0.015317286652078774, 0.019693654266958426, 0.028446389496717725, 0.0262582056892779, 0.0262582056892779, 0.030634573304157548, 0.037199124726477024, 0.04157549234135667, 0.045951859956236324, 0.04814004376367615, 0.05032822757111598, 0.3063457330415755, 0.3085339168490153, 0.30196936542669583, 0.04814004376367615, 0.05032822757111598, 0.0525164113785558, 0.05470459518599562, 0.05689277899343545, 0.05908096280087528, 0.05908096280087528, 0.07221006564551423, 0.0700218818380744, 0.06564551422319474, 0.0700218818380744, 0.15098468271334792, 0.8468271334792122, 0.7483588621444202, 0.087527352297593, 0.08533916849015317, 0.0700218818380744, 0.06783369803063458, 0.06783369803063458, 0.06564551422319474, 0.06564551422319474, 0.06564551422319474, 0.06783369803063458, 0.06783369803063458, 0.0700218818380744, 0.0700218818380744, 0.0700218818380744, 0.0700218818380744, 0.0700218818380744, 0.07658643326039387, 0.087527352297593, 0.10284463894967177, 0.11816192560175055, 0.12035010940919037, 0.1487964989059081, 0.17286652078774617, 0.19474835886214442, 0.2538293216630197], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1730.gap.json b/pfam_gap_rates/DUF1730.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce05895024adb6ffcb51449dd06aa6d99ddd1411
--- /dev/null
+++ b/pfam_gap_rates/DUF1730.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1730", "n_seqs": 928, "length": 89, "gap_rates": [0.07543103448275862, 0.05818965517241379, 0.03017241379310345, 0.029094827586206896, 0.02693965517241379, 0.023706896551724137, 0.01939655172413793, 0.016163793103448277, 0.014008620689655173, 0.007543103448275862, 0.004310344827586207, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0010775862068965517, 0.0010775862068965517, 0.0010775862068965517, 0.9105603448275862, 0.8502155172413793, 0.00646551724137931, 0.9267241379310345, 0.009698275862068966, 0.010775862068965518, 0.03017241379310345, 0.03017241379310345, 0.07758620689655173, 0.11206896551724138, 0.25754310344827586, 0.30926724137931033, 0.7252155172413793, 0.9418103448275862, 0.8696120689655172, 0.48814655172413796, 0.25, 0.17025862068965517, 0.09159482758620689, 0.03879310344827586, 0.009698275862068966, 0.0010775862068965517, 0.0010775862068965517, 0.0010775862068965517, 0.0010775862068965517, 0.0010775862068965517, 0.0010775862068965517, 0.0010775862068965517, 0.0010775862068965517, 0.0021551724137931034, 0.010775862068965518, 0.0021551724137931034, 0.0021551724137931034, 0.004310344827586207, 0.003232758620689655, 0.005387931034482759, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.003232758620689655, 0.004310344827586207, 0.004310344827586207, 0.005387931034482759, 0.008620689655172414, 0.01293103448275862, 0.02586206896551724, 0.017241379310344827, 0.034482758620689655, 0.2338362068965517, 0.9008620689655172, 0.9342672413793104, 0.947198275862069, 0.9170258620689655, 0.8114224137931034, 0.08512931034482758, 0.03017241379310345, 0.023706896551724137, 0.03017241379310345, 0.03556034482758621, 0.04418103448275862, 0.04633620689655173, 0.09913793103448276], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1758.gap.json b/pfam_gap_rates/DUF1758.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d35f775a5c09aecb5c1b04d960d71e8862ed83ec
--- /dev/null
+++ b/pfam_gap_rates/DUF1758.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1758", "n_seqs": 753, "length": 166, "gap_rates": [0.795484727755644, 0.7197875166002656, 0.6268260292164675, 0.5816733067729084, 0.5099601593625498, 0.46879150066401065, 0.40903054448871184, 0.350597609561753, 0.3147410358565737, 0.9150066401062417, 0.24302788844621515, 0.2058432934926959, 0.17397078353253653, 0.15803452855245684, 0.14209827357237717, 0.13545816733067728, 0.11819389110225764, 0.10889774236387782, 0.1049136786188579, 0.10358565737051793, 0.10358565737051793, 0.10092961487383798, 0.10092961487383798, 0.099601593625498, 0.09827357237715803, 0.09694555112881806, 0.09561752988047809, 0.09561752988047809, 0.09428950863213811, 0.09428950863213811, 0.09428950863213811, 0.09428950863213811, 0.09428950863213811, 0.09428950863213811, 0.09163346613545817, 0.09163346613545817, 0.09296148738379814, 0.09296148738379814, 0.09561752988047809, 0.10889774236387782, 0.09561752988047809, 0.09561752988047809, 0.09694555112881806, 0.2297476759628154, 0.1248339973439575, 0.11819389110225764, 0.099601593625498, 0.09428950863213811, 0.09827357237715803, 0.10358565737051793, 0.10624169986719788, 0.10756972111553785, 0.1049136786188579, 0.1394422310756972, 0.12881806108897742, 0.12084993359893759, 0.12084993359893759, 0.1102257636122178, 0.11420982735723771, 0.11819389110225764, 0.11553784860557768, 0.11686586985391766, 0.10756972111553785, 0.11420982735723771, 0.10225763612217796, 0.10358565737051793, 0.11155378486055777, 0.11288180610889774, 0.11155378486055777, 0.11288180610889774, 0.10624169986719788, 0.10889774236387782, 0.11288180610889774, 0.9362549800796812, 0.5139442231075697, 0.1049136786188579, 0.09694555112881806, 0.09428950863213811, 0.09428950863213811, 0.09296148738379814, 0.09296148738379814, 0.09428950863213811, 0.09296148738379814, 0.09296148738379814, 0.09561752988047809, 0.09827357237715803, 0.099601593625498, 0.09827357237715803, 0.09827357237715803, 0.10358565737051793, 0.1049136786188579, 0.21248339973439576, 0.1699867197875166, 0.13147410358565736, 0.12350597609561753, 0.12749003984063745, 0.13280212483399734, 0.1460823373173971, 0.13678618857901725, 0.1248339973439575, 0.11952191235059761, 0.11553784860557768, 0.12350597609561753, 0.11553784860557768, 0.11686586985391766, 0.12217795484727756, 0.12350597609561753, 0.11288180610889774, 0.11420982735723771, 0.10624169986719788, 0.28286852589641437, 0.1806108897742364, 0.14741035856573706, 0.796812749003984, 0.1248339973439575, 0.11288180610889774, 0.10624169986719788, 0.10092961487383798, 0.1102257636122178, 0.10358565737051793, 0.09694555112881806, 0.09827357237715803, 0.09827357237715803, 0.09827357237715803, 0.099601593625498, 0.10225763612217796, 0.1102257636122178, 0.14475431606905712, 0.1301460823373174, 0.1301460823373174, 0.1341301460823373, 0.1394422310756972, 0.1407702523240372, 0.16865869853917662, 0.17662682602921648, 0.1752988047808765, 0.18592297476759628, 0.18326693227091634, 0.19389110225763612, 0.19389110225763612, 0.21115537848605578, 0.20451527224435592, 0.20185922974767595, 0.199203187250996, 0.20451527224435592, 0.19256308100929614, 0.1952191235059761, 0.19654714475431606, 0.1952191235059761, 0.19256308100929614, 0.19256308100929614, 0.19389110225763612, 0.19654714475431606, 0.199203187250996, 0.20053120849933598, 0.21248339973439576, 0.2961487383798141, 0.4435590969455511, 0.5590969455511288, 0.6547144754316069, 0.7290836653386454, 0.7901726427622842, 0.8300132802124834, 0.8924302788844621, 0.9163346613545816, 0.9482071713147411], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1778.gap.json b/pfam_gap_rates/DUF1778.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80277905675233db3e6d75761a9dc2ec7fdffae7
--- /dev/null
+++ b/pfam_gap_rates/DUF1778.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1778", "n_seqs": 368, "length": 81, "gap_rates": [0.42391304347826086, 0.15489130434782608, 0.09782608695652174, 0.07608695652173914, 0.07608695652173914, 0.06793478260869565, 0.06521739130434782, 0.06521739130434782, 0.0625, 0.0625, 0.059782608695652176, 0.051630434782608696, 0.051630434782608696, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.04619565217391304, 0.04619565217391304, 0.04619565217391304, 0.04619565217391304, 0.04619565217391304, 0.04619565217391304, 0.8994565217391305, 0.043478260869565216, 0.04076086956521739, 0.035326086956521736, 0.035326086956521736, 0.035326086956521736, 0.03804347826086957, 0.03260869565217391, 0.035326086956521736, 0.035326086956521736, 0.02717391304347826, 0.02717391304347826, 0.029891304347826088, 0.035326086956521736, 0.035326086956521736, 0.04891304347826087, 0.05434782608695652, 0.05434782608695652, 0.057065217391304345, 0.057065217391304345, 0.059782608695652176, 0.057065217391304345, 0.05434782608695652, 0.0625, 0.0625, 0.0625, 0.059782608695652176, 0.06521739130434782, 0.07336956521739131, 0.07608695652173914, 0.07608695652173914, 0.07336956521739131, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.07880434782608696, 0.08423913043478261, 0.08423913043478261, 0.08423913043478261, 0.07880434782608696, 0.09239130434782608, 0.08967391304347826, 0.08695652173913043, 0.08967391304347826, 0.09782608695652174, 0.09510869565217392, 0.10054347826086957, 0.10326086956521739, 0.10054347826086957, 0.10597826086956522, 0.10869565217391304, 0.12228260869565218, 0.1983695652173913, 0.43478260869565216, 0.6005434782608695, 0.7391304347826086, 0.9456521739130435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1793.gap.json b/pfam_gap_rates/DUF1793.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43455ff396585556d07d3c7e0adbb6bfd95db4d7
--- /dev/null
+++ b/pfam_gap_rates/DUF1793.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1819.gap.json b/pfam_gap_rates/DUF1819.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e75cec9086d7a1ac556cb063957d757fbb0ed5a7
--- /dev/null
+++ b/pfam_gap_rates/DUF1819.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1819", "n_seqs": 132, "length": 193, "gap_rates": [0.75, 0.3333333333333333, 0.25, 0.23484848484848486, 0.21212121212121213, 0.1893939393939394, 0.18181818181818182, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1590909090909091, 0.15151515151515152, 0.14393939393939395, 0.14393939393939395, 0.12878787878787878, 0.12121212121212122, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.09090909090909091, 0.09090909090909091, 0.12878787878787878, 0.10606060606060606, 0.09848484848484848, 0.09090909090909091, 0.08333333333333333, 0.08333333333333333, 0.09848484848484848, 0.07575757575757576, 0.06818181818181818, 0.06818181818181818, 0.06060606060606061, 0.06060606060606061, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.07575757575757576, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.07575757575757576, 0.06818181818181818, 0.8560606060606061, 0.8712121212121212, 0.9015151515151515, 0.8636363636363636, 0.7651515151515151, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.06818181818181818, 0.07575757575757576, 0.8939393939393939, 0.06060606060606061, 0.06060606060606061, 0.07575757575757576, 0.06818181818181818, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.06818181818181818, 0.08333333333333333, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.08333333333333333, 0.08333333333333333, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09848484848484848, 0.09848484848484848, 0.10606060606060606, 0.10606060606060606, 0.11363636363636363, 0.11363636363636363, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.11363636363636363, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.8712121212121212, 0.946969696969697, 0.6666666666666666, 0.2803030303030303, 0.26515151515151514, 0.15151515151515152, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.17424242424242425, 0.18181818181818182, 0.19696969696969696, 0.20454545454545456, 0.21212121212121213, 0.23484848484848486, 0.3106060606060606, 0.4166666666666667, 0.5909090909090909, 0.8257575757575758], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1835.gap.json b/pfam_gap_rates/DUF1835.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0eb97e30e10bedab7c5480339b2496595636cbf
--- /dev/null
+++ b/pfam_gap_rates/DUF1835.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1835", "n_seqs": 156, "length": 134, "gap_rates": [0.41025641025641024, 0.26282051282051283, 0.23717948717948717, 0.23717948717948717, 0.23076923076923078, 0.22435897435897437, 0.25, 0.25, 0.24358974358974358, 0.21794871794871795, 0.1858974358974359, 0.1858974358974359, 0.1858974358974359, 0.17307692307692307, 0.15384615384615385, 0.1282051282051282, 0.1346153846153846, 0.15384615384615385, 0.14743589743589744, 0.15384615384615385, 0.3333333333333333, 0.3333333333333333, 0.34615384615384615, 0.28205128205128205, 0.7884615384615384, 0.7051282051282052, 0.02564102564102564, 0.019230769230769232, 0.01282051282051282, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.01282051282051282, 0.00641025641025641, 0.00641025641025641, 0.8910256410256411, 0.21153846153846154, 0.21153846153846154, 0.17307692307692307, 0.15384615384615385, 0.10897435897435898, 0.0641025641025641, 0.02564102564102564, 0.02564102564102564, 0.01282051282051282, 0.05128205128205128, 0.09615384615384616, 0.9358974358974359, 0.05128205128205128, 0.038461538461538464, 0.019230769230769232, 0.01282051282051282, 0.02564102564102564, 0.038461538461538464, 0.08333333333333333, 0.07692307692307693, 0.23076923076923078, 0.7884615384615384, 0.9230769230769231, 0.8589743589743589, 0.6923076923076923, 0.33974358974358976, 0.36538461538461536, 0.2948717948717949, 0.08974358974358974, 0.07692307692307693, 0.057692307692307696, 0.05128205128205128, 0.02564102564102564, 0.8397435897435898, 0.9166666666666666, 0.7307692307692307, 0.03205128205128205, 0.03205128205128205, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.019230769230769232, 0.07692307692307693, 0.05128205128205128, 0.0641025641025641, 0.019230769230769232, 0.02564102564102564, 0.019230769230769232, 0.10897435897435898, 0.07692307692307693, 0.08333333333333333, 0.03205128205128205, 0.9423076923076923, 0.8589743589743589, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.03205128205128205, 0.038461538461538464, 0.04487179487179487, 0.08333333333333333, 0.12179487179487179, 0.20512820512820512, 0.28846153846153844, 0.33974358974358976, 0.4230769230769231, 0.3974358974358974, 0.4230769230769231, 0.4423076923076923, 0.47435897435897434, 0.5705128205128205, 0.8653846153846154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1850.gap.json b/pfam_gap_rates/DUF1850.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e45f4af02a9365c670418b3ab192be49ca6f26ad
--- /dev/null
+++ b/pfam_gap_rates/DUF1850.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1850", "n_seqs": 218, "length": 96, "gap_rates": [0.27522935779816515, 0.12844036697247707, 0.05963302752293578, 0.022935779816513763, 0.022935779816513763, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6100917431192661, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045871559633027525, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045871559633027525, 0.0, 0.0, 0.0, 0.26605504587155965, 0.38990825688073394, 0.6284403669724771, 0.8853211009174312, 0.5229357798165137, 0.027522935779816515, 0.009174311926605505, 0.0045871559633027525, 0.0, 0.0, 0.027522935779816515, 0.0, 0.0045871559633027525, 0.46788990825688076, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.7706422018348624, 0.013761467889908258, 0.01834862385321101, 0.9128440366972477, 0.8990825688073395, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.8853211009174312, 0.4724770642201835, 0.03211009174311927, 0.03669724770642202, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.06422018348623854, 0.0871559633027523, 0.10550458715596331, 0.11009174311926606, 0.1743119266055046, 0.24770642201834864, 0.3211009174311927, 0.40825688073394495, 0.5045871559633027], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1887.gap.json b/pfam_gap_rates/DUF1887.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c37ccebeee78d3ab54a4a89f3fac2274975ea7ad
--- /dev/null
+++ b/pfam_gap_rates/DUF1887.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1949.gap.json b/pfam_gap_rates/DUF1949.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..757519ca7a532c6189baf5d13d80ac25133c533c
--- /dev/null
+++ b/pfam_gap_rates/DUF1949.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1949", "n_seqs": 881, "length": 57, "gap_rates": [0.3416572077185017, 0.16572077185017026, 0.039727582292849034, 0.021566401816118047, 0.018161180476730987, 0.012485811577752554, 0.01021566401816118, 0.007945516458569807, 0.004540295119182747, 0.004540295119182747, 0.004540295119182747, 0.00340522133938706, 0.0011350737797956867, 0.0011350737797956867, 0.0011350737797956867, 0.0011350737797956867, 0.0, 0.0022701475595913734, 0.021566401816118047, 0.00340522133938706, 0.0, 0.0, 0.022701475595913734, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9091940976163451, 0.0, 0.0011350737797956867, 0.0011350737797956867, 0.0011350737797956867, 0.0011350737797956867, 0.0022701475595913734, 0.00340522133938706, 0.004540295119182747, 0.018161180476730987, 0.021566401816118047, 0.026106696935300794, 0.02383654937570942, 0.0170261066969353, 0.012485811577752554, 0.014755959137343927, 0.018161180476730987, 0.026106696935300794, 0.039727582292849034, 0.04767309875141884, 0.053348467650397274, 0.06242905788876277, 0.07377979568671963, 0.08399545970488081, 0.09988649262202043, 0.12372304199772985, 0.3847900113507378], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1956.gap.json b/pfam_gap_rates/DUF1956.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ef6919131f476b53fe139c685508549d05538ef
--- /dev/null
+++ b/pfam_gap_rates/DUF1956.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1956", "n_seqs": 182, "length": 127, "gap_rates": [0.5164835164835165, 0.31868131868131866, 0.24725274725274726, 0.15934065934065933, 0.12637362637362637, 0.12637362637362637, 0.11538461538461539, 0.09340659340659341, 0.07692307692307693, 0.07692307692307693, 0.06593406593406594, 0.06593406593406594, 0.06043956043956044, 0.04945054945054945, 0.12637362637362637, 0.06593406593406594, 0.054945054945054944, 0.04945054945054945, 0.04395604395604396, 0.24175824175824176, 0.14285714285714285, 0.06043956043956044, 0.038461538461538464, 0.03296703296703297, 0.03296703296703297, 0.04395604395604396, 0.03296703296703297, 0.02197802197802198, 0.02197802197802198, 0.04395604395604396, 0.04395604395604396, 0.02197802197802198, 0.02197802197802198, 0.027472527472527472, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.027472527472527472, 0.027472527472527472, 0.03296703296703297, 0.02197802197802198, 0.016483516483516484, 0.016483516483516484, 0.005494505494505495, 0.005494505494505495, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.016483516483516484, 0.0, 0.005494505494505495, 0.0, 0.0, 0.0, 0.945054945054945, 0.9340659340659341, 0.07142857142857142, 0.02197802197802198, 0.01098901098901099, 0.016483516483516484, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.01098901098901099, 0.01098901098901099, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.01098901098901099, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.027472527472527472, 0.02197802197802198, 0.02197802197802198, 0.03296703296703297, 0.027472527472527472, 0.038461538461538464, 0.03296703296703297, 0.04945054945054945, 0.04395604395604396, 0.14835164835164835, 0.1043956043956044, 0.12087912087912088, 0.17582417582417584, 0.29120879120879123, 0.13186813186813187, 0.0989010989010989, 0.07692307692307693, 0.06593406593406594, 0.07142857142857142, 0.37362637362637363, 0.3791208791208791, 0.3516483516483517, 0.0989010989010989, 0.08241758241758242, 0.08241758241758242, 0.08791208791208792, 0.0989010989010989, 0.10989010989010989, 0.12087912087912088, 0.12637362637362637, 0.13736263736263737, 0.15384615384615385, 0.17582417582417584, 0.23626373626373626, 0.25274725274725274, 0.2857142857142857, 0.38461538461538464, 0.45604395604395603, 0.532967032967033], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1981.gap.json b/pfam_gap_rates/DUF1981.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb8657804025bebce5d0df684b984920e4b3abb5
--- /dev/null
+++ b/pfam_gap_rates/DUF1981.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1981", "n_seqs": 643, "length": 84, "gap_rates": [0.3468118195956454, 0.3157076205287714, 0.29237947122861585, 0.25194401244167963, 0.2379471228615863, 0.17573872472783825, 0.15241057542768274, 0.12286158631415241, 0.1119751166407465, 0.1026438569206843, 0.09486780715396578, 0.08242612752721618, 0.07153965785381027, 0.05754276827371695, 0.049766718506998445, 0.038880248833592534, 0.03732503888024884, 0.03732503888024884, 0.03732503888024884, 0.03732503888024884, 0.03576982892690513, 0.03421461897356143, 0.041990668740279936, 0.03265940902021773, 0.027993779160186624, 0.9066874027993779, 0.06842923794712286, 0.09175738724727839, 0.02332814930015552, 0.02177293934681182, 0.017107309486780714, 0.012441679626749611, 0.012441679626749611, 0.013996889580093312, 0.013996889580093312, 0.013996889580093312, 0.013996889580093312, 0.013996889580093312, 0.013996889580093312, 0.013996889580093312, 0.013996889580093312, 0.00933125972006221, 0.007776049766718507, 0.007776049766718507, 0.00933125972006221, 0.00933125972006221, 0.012441679626749611, 0.012441679626749611, 0.013996889580093312, 0.013996889580093312, 0.012441679626749611, 0.01088646967340591, 0.01088646967340591, 0.01088646967340591, 0.01088646967340591, 0.012441679626749611, 0.015552099533437015, 0.015552099533437015, 0.015552099533437015, 0.015552099533437015, 0.017107309486780714, 0.01866251944012442, 0.02021772939346812, 0.02021772939346812, 0.02021772939346812, 0.02021772939346812, 0.024883359253499222, 0.04510108864696734, 0.06998444790046657, 0.09020217729393468, 0.1026438569206843, 0.09642301710730948, 0.1026438569206843, 0.1104199066874028, 0.1290824261275272, 0.14307931570762053, 0.14774494556765164, 0.14930015552099535, 0.15085536547433903, 0.15552099533437014, 0.16640746500777606, 0.17107309486780714, 0.20684292379471228, 0.45412130637636083], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2053.gap.json b/pfam_gap_rates/DUF2053.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e39ec876edda679109a0e425c7513ce62fb6914
--- /dev/null
+++ b/pfam_gap_rates/DUF2053.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2053", "n_seqs": 143, "length": 168, "gap_rates": [0.23076923076923078, 0.2097902097902098, 0.2097902097902098, 0.2097902097902098, 0.2097902097902098, 0.20279720279720279, 0.20279720279720279, 0.1888111888111888, 0.16783216783216784, 0.16083916083916083, 0.16083916083916083, 0.16083916083916083, 0.16783216783216784, 0.16083916083916083, 0.16083916083916083, 0.16083916083916083, 0.16083916083916083, 0.16083916083916083, 0.16083916083916083, 0.16083916083916083, 0.14685314685314685, 0.13986013986013987, 0.15384615384615385, 0.14685314685314685, 0.13986013986013987, 0.1258741258741259, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.1048951048951049, 0.1048951048951049, 0.11888111888111888, 0.11188811188811189, 0.11188811188811189, 0.11188811188811189, 0.11188811188811189, 0.11888111888111888, 0.11188811188811189, 0.11188811188811189, 0.11188811188811189, 0.22377622377622378, 0.1958041958041958, 0.7552447552447552, 0.9370629370629371, 0.8601398601398601, 0.6993006993006993, 0.17482517482517482, 0.18181818181818182, 0.17482517482517482, 0.16783216783216784, 0.1258741258741259, 0.11188811188811189, 0.1048951048951049, 0.09090909090909091, 0.08391608391608392, 0.055944055944055944, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.8041958041958042, 0.06293706293706294, 0.04895104895104895, 0.055944055944055944, 0.055944055944055944, 0.07692307692307693, 0.6643356643356644, 0.6573426573426573, 0.6573426573426573, 0.06993006993006994, 0.055944055944055944, 0.055944055944055944, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.04895104895104895, 0.055944055944055944, 0.04895104895104895, 0.04895104895104895, 0.055944055944055944, 0.055944055944055944, 0.06293706293706294, 0.055944055944055944, 0.055944055944055944, 0.06293706293706294, 0.055944055944055944, 0.055944055944055944, 0.06293706293706294, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08391608391608392, 0.08391608391608392, 0.08391608391608392, 0.08391608391608392, 0.08391608391608392, 0.09090909090909091, 0.09090909090909091, 0.11188811188811189, 0.1258741258741259, 0.1258741258741259, 0.1258741258741259, 0.8041958041958042, 0.8041958041958042, 0.8041958041958042, 0.11888111888111888, 0.13986013986013987, 0.15384615384615385, 0.17482517482517482, 0.36363636363636365, 0.40559440559440557, 0.42657342657342656], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2065.gap.json b/pfam_gap_rates/DUF2065.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..332a769592b69d10ba98f87debfc5405e8a0ae00
--- /dev/null
+++ b/pfam_gap_rates/DUF2065.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2065", "n_seqs": 342, "length": 56, "gap_rates": [0.2309941520467836, 0.08771929824561403, 0.049707602339181284, 0.043859649122807015, 0.03216374269005848, 0.029239766081871343, 0.02631578947368421, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.005847953216374269, 0.005847953216374269, 0.0029239766081871343, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.023391812865497075, 0.08187134502923976, 0.5555555555555556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2103.gap.json b/pfam_gap_rates/DUF2103.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99368e084a08b49b9f12893e9dd62f6d97747575
--- /dev/null
+++ b/pfam_gap_rates/DUF2103.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2103", "n_seqs": 109, "length": 100, "gap_rates": [0.944954128440367, 0.7339449541284404, 0.3853211009174312, 0.1651376146788991, 0.11926605504587157, 0.11009174311926606, 0.09174311926605505, 0.09174311926605505, 0.08256880733944955, 0.07339449541284404, 0.10091743119266056, 0.08256880733944955, 0.09174311926605505, 0.06422018348623854, 0.06422018348623854, 0.07339449541284404, 0.08256880733944955, 0.8165137614678899, 0.7981651376146789, 0.1743119266055046, 0.03669724770642202, 0.03669724770642202, 0.027522935779816515, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5504587155963303, 0.045871559633027525, 0.009174311926605505, 0.06422018348623854, 0.03669724770642202, 0.9357798165137615, 0.06422018348623854, 0.03669724770642202, 0.027522935779816515, 0.009174311926605505, 0.01834862385321101, 0.01834862385321101, 0.0, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.0, 0.6513761467889908, 0.6238532110091743, 0.41284403669724773, 0.027522935779816515, 0.01834862385321101, 0.0, 0.27522935779816515, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009174311926605505, 0.027522935779816515, 0.05504587155963303, 0.08256880733944955, 0.10091743119266056, 0.1651376146788991, 0.1926605504587156, 0.24770642201834864, 0.28440366972477066, 0.29357798165137616, 0.3394495412844037, 0.3577981651376147, 0.3853211009174312, 0.43119266055045874, 0.4954128440366973, 0.5412844036697247, 0.6972477064220184, 0.908256880733945], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2154.gap.json b/pfam_gap_rates/DUF2154.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85537334c436f76c1b8c2bda02965b7c5e99a020
--- /dev/null
+++ b/pfam_gap_rates/DUF2154.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2154", "n_seqs": 480, "length": 115, "gap_rates": [0.7895833333333333, 0.5666666666666667, 0.5333333333333333, 0.5, 0.475, 0.4583333333333333, 0.4625, 0.43333333333333335, 0.40625, 0.38125, 0.33125, 0.29791666666666666, 0.25, 0.22916666666666666, 0.9333333333333333, 0.17708333333333334, 0.15625, 0.12291666666666666, 0.08125, 0.05625, 0.03333333333333333, 0.020833333333333332, 0.0125, 0.0125, 0.0125, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.014583333333333334, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.03125, 0.03125, 0.027083333333333334, 0.13333333333333333, 0.016666666666666666, 0.00625, 0.008333333333333333, 0.004166666666666667, 0.004166666666666667, 0.00625, 0.004166666666666667, 0.004166666666666667, 0.0020833333333333333, 0.0020833333333333333, 0.004166666666666667, 0.004166666666666667, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.010416666666666666, 0.0125, 0.0125, 0.0125, 0.0125, 0.01875, 0.041666666666666664, 0.05416666666666667, 0.23958333333333334, 0.2520833333333333, 0.2520833333333333, 0.28125, 0.30416666666666664, 0.33125, 0.35625, 0.3854166666666667, 0.6375, 0.4583333333333333, 0.4479166666666667, 0.46041666666666664, 0.5270833333333333, 0.46875, 0.475, 0.47708333333333336, 0.475, 0.47291666666666665, 0.47291666666666665, 0.475, 0.49166666666666664, 0.46875, 0.46458333333333335, 0.46458333333333335, 0.4791666666666667, 0.4625, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4625, 0.4625, 0.46458333333333335, 0.4666666666666667, 0.4666666666666667, 0.4666666666666667, 0.46875, 0.475, 0.48541666666666666, 0.5208333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2160.gap.json b/pfam_gap_rates/DUF2160.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c54e449a140a56d2b2c8de324945fb8208b0f94
--- /dev/null
+++ b/pfam_gap_rates/DUF2160.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2160", "n_seqs": 144, "length": 100, "gap_rates": [0.09027777777777778, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.7708333333333334, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7430555555555556, 0.8055555555555556, 0.8055555555555556, 0.8055555555555556, 0.8055555555555556, 0.8055555555555556, 0.8055555555555556, 0.8055555555555556, 0.8055555555555556, 0.7916666666666666, 0.7152777777777778, 0.0, 0.0, 0.0, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.013888888888888888, 0.013888888888888888, 0.020833333333333332, 0.027777777777777776, 0.2222222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2163.gap.json b/pfam_gap_rates/DUF2163.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8e0cb033b295e4384ecc48a2a13ca142ebf7ff5
--- /dev/null
+++ b/pfam_gap_rates/DUF2163.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2163", "n_seqs": 188, "length": 174, "gap_rates": [0.5053191489361702, 0.4946808510638298, 0.4734042553191489, 0.42021276595744683, 0.3776595744680851, 0.324468085106383, 0.30319148936170215, 0.2925531914893617, 0.2925531914893617, 0.2712765957446808, 0.2393617021276596, 0.2127659574468085, 0.18617021276595744, 0.16489361702127658, 0.15425531914893617, 0.14361702127659576, 0.11170212765957446, 0.11170212765957446, 0.09042553191489362, 0.0797872340425532, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.03723404255319149, 0.02127659574468085, 0.11170212765957446, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.026595744680851064, 0.02127659574468085, 0.015957446808510637, 0.015957446808510637, 0.015957446808510637, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.015957446808510637, 0.12234042553191489, 0.9361702127659575, 0.015957446808510637, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.015957446808510637, 0.015957446808510637, 0.015957446808510637, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.02127659574468085, 0.031914893617021274, 0.0851063829787234, 0.015957446808510637, 0.010638297872340425, 0.015957446808510637, 0.02127659574468085, 0.015957446808510637, 0.015957446808510637, 0.8776595744680851, 0.9095744680851063, 0.9202127659574468, 0.9042553191489362, 0.8776595744680851, 0.015957446808510637, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.015957446808510637, 0.02127659574468085, 0.015957446808510637, 0.015957446808510637, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.015957446808510637, 0.015957446808510637, 0.015957446808510637, 0.02127659574468085, 0.02127659574468085, 0.047872340425531915, 0.047872340425531915, 0.9148936170212766, 0.9308510638297872, 0.898936170212766, 0.06914893617021277, 0.026595744680851064, 0.026595744680851064, 0.75, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.031914893617021274, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.026595744680851064, 0.031914893617021274, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.026595744680851064, 0.031914893617021274, 0.031914893617021274, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.8191489361702128, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.03723404255319149, 0.03723404255319149, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.13297872340425532, 0.3882978723404255], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2181.gap.json b/pfam_gap_rates/DUF2181.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..228f1625fdca840e0e7e9677f0ad80a2e34851c9
--- /dev/null
+++ b/pfam_gap_rates/DUF2181.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2219.gap.json b/pfam_gap_rates/DUF2219.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1c4a0c88b3481e937f05fe7d071d6099d6b4d12
--- /dev/null
+++ b/pfam_gap_rates/DUF2219.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2220.gap.json b/pfam_gap_rates/DUF2220.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64d85a02c0b1132f4977660318329ec3b60db1c7
--- /dev/null
+++ b/pfam_gap_rates/DUF2220.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2228.gap.json b/pfam_gap_rates/DUF2228.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..185cdee60978520827b8a10b8956c6a1dcbdc025
--- /dev/null
+++ b/pfam_gap_rates/DUF2228.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2229.gap.json b/pfam_gap_rates/DUF2229.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e11e3769832345c431a202fc42b6570571afd0b
--- /dev/null
+++ b/pfam_gap_rates/DUF2229.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2236.gap.json b/pfam_gap_rates/DUF2236.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f30ae8f9ef482c6c6faba0faaf5ade6b0950f1d1
--- /dev/null
+++ b/pfam_gap_rates/DUF2236.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2254.gap.json b/pfam_gap_rates/DUF2254.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6505c4ec0e185df22bb5846d9c2e9ee52caa4be2
--- /dev/null
+++ b/pfam_gap_rates/DUF2254.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2263.gap.json b/pfam_gap_rates/DUF2263.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f0102b34b463f3ed94262b5c011c5240517dcb9
--- /dev/null
+++ b/pfam_gap_rates/DUF2263.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2263", "n_seqs": 334, "length": 182, "gap_rates": [0.7305389221556886, 0.688622754491018, 0.6377245508982036, 0.6287425149700598, 0.6287425149700598, 0.6227544910179641, 0.6197604790419161, 0.6197604790419161, 0.6167664670658682, 0.6137724550898204, 0.5988023952095808, 0.592814371257485, 0.5898203592814372, 0.5898203592814372, 0.5868263473053892, 0.6976047904191617, 0.5868263473053892, 0.5688622754491018, 0.5538922155688623, 0.5868263473053892, 0.5508982035928144, 0.5179640718562875, 0.5059880239520959, 0.5029940119760479, 0.5089820359281437, 0.5059880239520959, 0.4940119760479042, 0.47904191616766467, 0.47005988023952094, 0.4550898203592814, 0.437125748502994, 0.4281437125748503, 0.4251497005988024, 0.4251497005988024, 0.4221556886227545, 0.41916167664670656, 0.4161676646706587, 0.4820359281437126, 0.4041916167664671, 0.5718562874251497, 0.6766467065868264, 0.7634730538922155, 0.8353293413173652, 0.907185628742515, 0.937125748502994, 0.9431137724550899, 0.9461077844311377, 0.9401197604790419, 0.9251497005988024, 0.8832335329341318, 0.8083832335329342, 0.7065868263473054, 0.6167664670658682, 0.5389221556886228, 0.44011976047904194, 0.40718562874251496, 0.36227544910179643, 0.3383233532934132, 0.31736526946107785, 0.3023952095808383, 0.27245508982035926, 0.25449101796407186, 0.24251497005988024, 0.2245508982035928, 0.20658682634730538, 0.18862275449101795, 0.15868263473053892, 0.1407185628742515, 0.12275449101796407, 0.10179640718562874, 0.09281437125748503, 0.09281437125748503, 0.09281437125748503, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.07784431137724551, 0.0718562874251497, 0.0718562874251497, 0.0688622754491018, 0.06287425149700598, 0.0658682634730539, 0.0658682634730539, 0.0658682634730539, 0.08982035928143713, 0.15868263473053892, 0.17065868263473055, 0.2964071856287425, 0.5778443113772455, 0.6976047904191617, 0.7664670658682635, 0.8622754491017964, 0.9041916167664671, 0.9251497005988024, 0.9491017964071856, 0.9461077844311377, 0.9161676646706587, 0.8772455089820359, 0.8173652694610778, 0.7514970059880239, 0.6377245508982036, 0.46706586826347307, 0.11377245508982035, 0.05389221556886228, 0.029940119760479042, 0.02694610778443114, 0.023952095808383235, 0.014970059880239521, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.014970059880239521, 0.017964071856287425, 0.014970059880239521, 0.017964071856287425, 0.014970059880239521, 0.014970059880239521, 0.014970059880239521, 0.014970059880239521, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.020958083832335328, 0.020958083832335328, 0.020958083832335328, 0.020958083832335328, 0.020958083832335328, 0.020958083832335328, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.7694610778443114, 0.9461077844311377, 0.6467065868263473, 0.3323353293413174, 0.31137724550898205, 0.05389221556886228, 0.06287425149700598, 0.07784431137724551, 0.20658682634730538, 0.23053892215568864, 0.26047904191616766, 0.9251497005988024, 0.9431137724550899, 0.8173652694610778, 0.2844311377245509, 0.2754491017964072, 0.26047904191616766, 0.26047904191616766, 0.9461077844311377, 0.25149700598802394, 0.1467065868263473, 0.11976047904191617, 0.12574850299401197, 0.10479041916167664, 0.09880239520958084, 0.0658682634730539, 0.0658682634730539, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.0658682634730539, 0.07784431137724551, 0.09580838323353294, 0.11976047904191617, 0.47305389221556887], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2271.gap.json b/pfam_gap_rates/DUF2271.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40f2954a2147f53be187a18cc2a87a1d58043488
--- /dev/null
+++ b/pfam_gap_rates/DUF2271.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2271", "n_seqs": 179, "length": 148, "gap_rates": [0.44692737430167595, 0.15083798882681565, 0.11731843575418995, 0.11173184357541899, 0.10614525139664804, 0.10614525139664804, 0.0893854748603352, 0.441340782122905, 0.0893854748603352, 0.0893854748603352, 0.08379888268156424, 0.08379888268156424, 0.0782122905027933, 0.05027932960893855, 0.05027932960893855, 0.0446927374301676, 0.0223463687150838, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.03910614525139665, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.0111731843575419, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4860335195530726, 0.5307262569832403, 0.6145251396648045, 0.8324022346368715, 0.6145251396648045, 0.6033519553072626, 0.5083798882681564, 0.4692737430167598, 0.0, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.0111731843575419, 0.0223463687150838, 0.01675977653631285, 0.00558659217877095, 0.0, 0.9329608938547486, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00558659217877095, 0.0, 0.7094972067039106, 0.01675977653631285, 0.0223463687150838, 0.07262569832402235, 0.4134078212290503, 0.22905027932960895, 0.9441340782122905, 0.9497206703910615, 0.88268156424581, 0.0223463687150838, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00558659217877095, 0.0, 0.00558659217877095, 0.0111731843575419, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.061452513966480445, 0.07262569832402235, 0.07262569832402235, 0.0782122905027933, 0.0782122905027933, 0.08379888268156424, 0.45251396648044695, 0.4134078212290503, 0.027932960893854747, 0.0223463687150838, 0.027932960893854747, 0.0223463687150838, 0.0223463687150838, 0.37988826815642457, 0.027932960893854747, 0.027932960893854747, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.027932960893854747, 0.0335195530726257, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.0446927374301676, 0.055865921787709494, 0.055865921787709494, 0.055865921787709494, 0.6759776536312849, 0.35195530726256985, 0.07262569832402235, 0.0670391061452514, 0.0670391061452514, 0.1005586592178771, 0.44692737430167595, 0.41899441340782123, 0.12290502793296089, 0.1340782122905028, 0.1452513966480447, 0.1452513966480447, 0.1452513966480447, 0.15083798882681565, 0.2011173184357542], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2313.gap.json b/pfam_gap_rates/DUF2313.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bab33a21e7f44e2abbf21c42569335fd2f77465c
--- /dev/null
+++ b/pfam_gap_rates/DUF2313.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2313", "n_seqs": 203, "length": 193, "gap_rates": [0.9261083743842364, 0.49261083743842365, 0.3054187192118227, 0.26108374384236455, 0.22167487684729065, 0.19704433497536947, 0.1724137931034483, 0.1625615763546798, 0.15763546798029557, 0.15763546798029557, 0.15270935960591134, 0.15270935960591134, 0.1477832512315271, 0.1477832512315271, 0.12315270935960591, 0.7635467980295566, 0.8374384236453202, 0.8275862068965517, 0.729064039408867, 0.12807881773399016, 0.08866995073891626, 0.06896551724137931, 0.06896551724137931, 0.059113300492610835, 0.04926108374384237, 0.04433497536945813, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.7241379310344828, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.029556650246305417, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.07389162561576355, 0.034482758620689655, 0.034482758620689655, 0.7832512315270936, 0.9211822660098522, 0.7931034482758621, 0.7389162561576355, 0.04926108374384237, 0.04433497536945813, 0.03940886699507389, 0.08866995073891626, 0.054187192118226604, 0.034482758620689655, 0.029556650246305417, 0.024630541871921183, 0.024630541871921183, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.014778325123152709, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.014778325123152709, 0.019704433497536946, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.029556650246305417, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.029556650246305417, 0.029556650246305417, 0.41379310344827586, 0.04433497536945813, 0.27586206896551724, 0.43349753694581283, 0.054187192118226604, 0.04926108374384237, 0.04926108374384237, 0.054187192118226604, 0.054187192118226604, 0.04433497536945813, 0.04433497536945813, 0.04926108374384237, 0.7487684729064039, 0.7536945812807881, 0.7438423645320197, 0.7339901477832512, 0.7044334975369458, 0.6995073891625616, 0.6896551724137931, 0.6650246305418719, 0.7339901477832512, 0.7339901477832512, 0.7536945812807881, 0.7733990147783252, 0.9359605911330049, 0.8226600985221675, 0.7733990147783252, 0.7438423645320197, 0.7339901477832512, 0.729064039408867, 0.13793103448275862, 0.13793103448275862, 0.09852216748768473, 0.08866995073891626, 0.08374384236453201, 0.07389162561576355, 0.07389162561576355, 0.08374384236453201, 0.08374384236453201, 0.07881773399014778, 0.7339901477832512, 0.7339901477832512, 0.7438423645320197, 0.7536945812807881, 0.9408866995073891, 0.9458128078817734, 0.7931034482758621, 0.7536945812807881, 0.7339901477832512, 0.7339901477832512, 0.7241379310344828, 0.3793103448275862, 0.35467980295566504, 0.18719211822660098, 0.16748768472906403, 0.15763546798029557, 0.14285714285714285, 0.12315270935960591, 0.12807881773399016, 0.14285714285714285, 0.16748768472906403, 0.1724137931034483, 0.7241379310344828, 0.7192118226600985, 0.6896551724137931, 0.6699507389162561, 0.645320197044335, 0.1477832512315271, 0.1477832512315271, 0.1477832512315271, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.1477832512315271, 0.15270935960591134, 0.1625615763546798, 0.4088669950738916, 0.43349753694581283, 0.4039408866995074, 0.4876847290640394, 0.4827586206896552, 0.5566502463054187, 0.5960591133004927, 0.8226600985221675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF234.gap.json b/pfam_gap_rates/DUF234.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c6242e7d8cd3152fe1af1f33c50329ca1a8cb7e
--- /dev/null
+++ b/pfam_gap_rates/DUF234.gap.json
@@ -0,0 +1 @@
+{"family": "DUF234", "n_seqs": 358, "length": 116, "gap_rates": [0.12849162011173185, 0.11452513966480447, 0.10335195530726257, 0.1005586592178771, 0.09776536312849161, 0.09497206703910614, 0.0893854748603352, 0.0893854748603352, 0.0893854748603352, 0.0893854748603352, 0.08659217877094973, 0.08100558659217877, 0.08100558659217877, 0.0782122905027933, 0.06983240223463687, 0.06983240223463687, 0.11731843575418995, 0.1005586592178771, 0.0670391061452514, 0.06983240223463687, 0.06983240223463687, 0.7262569832402235, 0.0670391061452514, 0.05865921787709497, 0.061452513966480445, 0.061452513966480445, 0.05027932960893855, 0.03910614525139665, 0.036312849162011177, 0.8938547486033519, 0.036312849162011177, 0.0335195530726257, 0.0335195530726257, 0.0223463687150838, 0.019553072625698324, 0.019553072625698324, 0.019553072625698324, 0.019553072625698324, 0.019553072625698324, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.013966480446927373, 0.013966480446927373, 0.11731843575418995, 0.12011173184357542, 0.18156424581005587, 0.18435754189944134, 0.21508379888268156, 0.17039106145251395, 0.22905027932960895, 0.22905027932960895, 0.24022346368715083, 0.20949720670391062, 0.11452513966480447, 0.01675977653631285, 0.013966480446927373, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.008379888268156424, 0.5865921787709497, 0.5893854748603352, 0.6256983240223464, 0.8910614525139665, 0.9413407821229051, 0.9078212290502793, 0.8687150837988827, 0.6061452513966481, 0.5865921787709497, 0.5865921787709497, 0.008379888268156424, 0.8854748603351955, 0.8631284916201117, 0.00558659217877095, 0.0111731843575419, 0.013966480446927373, 0.9217877094972067, 0.9106145251396648, 0.008379888268156424, 0.008379888268156424, 0.008379888268156424, 0.008379888268156424, 0.008379888268156424, 0.008379888268156424, 0.01675977653631285, 0.013966480446927373, 0.013966480446927373, 0.013966480446927373, 0.01675977653631285, 0.35195530726256985, 0.30446927374301674, 0.0223463687150838, 0.01675977653631285, 0.0223463687150838, 0.027932960893854747, 0.025139664804469275, 0.025139664804469275, 0.030726256983240222, 0.04189944134078212, 0.07262569832402235, 0.10614525139664804, 0.8072625698324022, 0.7094972067039106, 0.729050279329609, 0.7932960893854749, 0.8575418994413407, 0.8938547486033519, 0.9106145251396648, 0.9189944134078212, 0.9441340782122905], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2345.gap.json b/pfam_gap_rates/DUF2345.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a4e0e28bfd97cf95d19abc0f9a980e55c3c6cda
--- /dev/null
+++ b/pfam_gap_rates/DUF2345.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2346.gap.json b/pfam_gap_rates/DUF2346.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1aad7345e255a132512e337e039d338e036b6675
--- /dev/null
+++ b/pfam_gap_rates/DUF2346.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2346", "n_seqs": 207, "length": 85, "gap_rates": [0.40096618357487923, 0.37681159420289856, 0.3864734299516908, 0.26570048309178745, 0.1932367149758454, 0.08695652173913043, 0.0821256038647343, 0.06763285024154589, 0.06763285024154589, 0.06280193236714976, 0.03864734299516908, 0.03864734299516908, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.0, 0.0, 0.0, 0.0, 0.9371980676328503, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.34782608695652173, 0.2898550724637681, 0.0, 0.0, 0.0, 0.7004830917874396, 0.0, 0.0, 0.0, 0.004830917874396135, 0.3719806763285024, 0.3671497584541063, 0.3719806763285024, 0.13526570048309178, 0.0966183574879227, 0.09178743961352658, 0.08695652173913043, 0.4251207729468599, 0.4444444444444444, 0.45893719806763283, 0.4830917874396135, 0.9130434782608695, 0.46859903381642515, 0.4444444444444444, 0.4444444444444444, 0.41545893719806765, 0.024154589371980676, 0.05314009661835749, 0.057971014492753624, 0.07729468599033816, 0.10144927536231885, 0.8888888888888888, 0.3285024154589372, 0.09178743961352658, 0.09178743961352658, 0.07729468599033816, 0.07729468599033816, 0.07729468599033816, 0.07729468599033816, 0.07729468599033816, 0.07729468599033816, 0.07729468599033816, 0.07729468599033816, 0.07729468599033816, 0.0821256038647343, 0.0821256038647343, 0.09178743961352658, 0.1111111111111111, 0.12077294685990338, 0.1497584541062802, 0.1932367149758454, 0.2946859903381642, 0.3719806763285024, 0.4396135265700483, 0.5652173913043478, 0.7294685990338164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2357.gap.json b/pfam_gap_rates/DUF2357.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e97b5f6f09e9960b90039cefafc6f06c24a78307
--- /dev/null
+++ b/pfam_gap_rates/DUF2357.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2397.gap.json b/pfam_gap_rates/DUF2397.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..015c25eb2b3ac4a1ea9e7638afb18da92d8859d1
--- /dev/null
+++ b/pfam_gap_rates/DUF2397.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF2400.gap.json b/pfam_gap_rates/DUF2400.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..23e8507734cdc69f6c0d0ad0d430de4e7d4241f7
--- /dev/null
+++ b/pfam_gap_rates/DUF2400.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF2464.gap.json b/pfam_gap_rates/DUF2464.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae5e27794664753a3e1c71188f80780587e2aae6
--- /dev/null
+++ b/pfam_gap_rates/DUF2464.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF247.gap.json b/pfam_gap_rates/DUF247.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30f1329d026a55f4cef7996a3a4d42b3621a3819
--- /dev/null
+++ b/pfam_gap_rates/DUF247.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2500.gap.json b/pfam_gap_rates/DUF2500.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e740710f3c3b4ce29cf1028782eeb68b8c624cb4
--- /dev/null
+++ b/pfam_gap_rates/DUF2500.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2637.gap.json b/pfam_gap_rates/DUF2637.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb6505e5f56eca1cb965c8d7fd7407bc0646c0ee
--- /dev/null
+++ b/pfam_gap_rates/DUF2637.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2723.gap.json b/pfam_gap_rates/DUF2723.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a4aecc6729fbe3120d3678761755ec289639fec
--- /dev/null
+++ b/pfam_gap_rates/DUF2723.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2784.gap.json b/pfam_gap_rates/DUF2784.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..137ea1254ee4f60e065d66bed099fd61dbd2b1e2
--- /dev/null
+++ b/pfam_gap_rates/DUF2784.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2784", "n_seqs": 151, "length": 128, "gap_rates": [0.7748344370860927, 0.271523178807947, 0.1390728476821192, 0.09933774834437085, 0.07947019867549669, 0.052980132450331126, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.1456953642384106, 0.1390728476821192, 0.1456953642384106, 0.1390728476821192, 0.695364238410596, 0.7019867549668874, 0.7086092715231788, 0.7086092715231788, 0.7019867549668874, 0.695364238410596, 0.6887417218543046, 0.019867549668874173, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.019867549668874173, 0.019867549668874173, 0.7218543046357616, 0.7218543046357616, 0.7086092715231788, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.8940397350993378, 0.8940397350993378, 0.8940397350993378, 0.8940397350993378, 0.8874172185430463, 0.033112582781456956, 0.026490066225165563, 0.019867549668874173, 0.8874172185430463, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.026490066225165563, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.06622516556291391, 0.09271523178807947, 0.7814569536423841, 0.09271523178807947, 0.09271523178807947, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.5231788079470199, 0.5165562913907285, 0.5165562913907285, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.039735099337748346, 0.046357615894039736, 0.046357615894039736, 0.046357615894039736, 0.046357615894039736, 0.052980132450331126, 0.052980132450331126, 0.06622516556291391, 0.07947019867549669, 0.10596026490066225, 0.1390728476821192, 0.2847682119205298], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2796.gap.json b/pfam_gap_rates/DUF2796.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0420ff352829a0debf3f26abecb1d1f02192e107
--- /dev/null
+++ b/pfam_gap_rates/DUF2796.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2849.gap.json b/pfam_gap_rates/DUF2849.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98111588bf889c31483b430a8ba5500af3ebc294
--- /dev/null
+++ b/pfam_gap_rates/DUF2849.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2849", "n_seqs": 150, "length": 89, "gap_rates": [0.34, 0.05333333333333334, 0.04, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.03333333333333333, 0.013333333333333334, 0.013333333333333334, 0.02, 0.24, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.72, 0.6133333333333333, 0.06, 0.013333333333333334, 0.006666666666666667, 0.006666666666666667, 0.013333333333333334, 0.02, 0.17333333333333334, 0.15333333333333332, 0.14666666666666667, 0.006666666666666667, 0.013333333333333334, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.0, 0.0, 0.10666666666666667, 0.04, 0.06, 0.02, 0.7866666666666666, 0.02, 0.006666666666666667, 0.006666666666666667, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006666666666666667, 0.006666666666666667, 0.02, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.08, 0.28, 0.68], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF285.gap.json b/pfam_gap_rates/DUF285.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c32e3d4d278e71c39ba30af43ecae005e5191874
--- /dev/null
+++ b/pfam_gap_rates/DUF285.gap.json
@@ -0,0 +1 @@
+{"family": "DUF285", "n_seqs": 1669, "length": 125, "gap_rates": [0.9436788496105453, 0.871779508687837, 0.8262432594367884, 0.799281006590773, 0.7639304973037747, 0.7183942480527262, 0.695026962252846, 0.6926303175554224, 0.6866387058118634, 0.6740563211503895, 0.6632714200119832, 0.6488915518274416, 0.5955662073097663, 0.5464349910125824, 0.5410425404433793, 0.3433193529059317, 0.2396644697423607, 0.2019173157579389, 0.1713600958657879, 0.1426003594967046, 0.12941881366087477, 0.12342720191731575, 0.11863391252246855, 0.11623726782504494, 0.11024565608148593, 0.1060515278609946, 0.1006590772917915, 0.09526662672258837, 0.08388256440982625, 0.08088675853804674, 0.07729179149191133, 0.06710605152786099, 0.06351108448172559, 0.06351108448172559, 0.0689035350509287, 0.0659077291791492, 0.08148591971240264, 0.0713001797483523, 0.04973037747153984, 0.7639304973037747, 0.04913121629718394, 0.04733373277411624, 0.03834631515877771, 0.8591971240263631, 0.03175554224086279, 0.035949670461354104, 0.02037147992810066, 0.019173157579388856, 0.018573996405032954, 0.016776512881965248, 0.016177351707609346, 0.016776512881965248, 0.01737567405632115, 0.015578190533253445, 0.01378070701018574, 0.008987417615338526, 0.008987417615338526, 0.008987417615338526, 0.008388256440982624, 0.007789095266626723, 0.008987417615338526, 0.01018573996405033, 0.01018573996405033, 0.011384062312762133, 0.06291192330736968, 0.013181545835829839, 0.01378070701018574, 0.013181545835829839, 0.6476932294787298, 0.014979029358897543, 0.01378070701018574, 0.025164769322947873, 0.022168963451168363, 0.016177351707609346, 0.015578190533253445, 0.016776512881965248, 0.017974835230677052, 0.023367285799880167, 0.026363091671659677, 0.025763930497303775, 0.02456560814859197, 0.02696225284601558, 0.02756141402037148, 0.03235470341521869, 0.035949670461354104, 0.035949670461354104, 0.03834631515877771, 0.07968843618933494, 0.08867585380467345, 0.07968843618933494, 0.09406830437387657, 0.11084481725584182, 0.8382264829239066, 0.18394248052726184, 0.20011983223487118, 0.2097064110245656, 0.22168963451168364, 0.2408627920910725, 0.24565608148591972, 0.25284601557819053, 0.2738166566806471, 0.28579988016776514, 0.3007789095266627, 0.31336129418813663, 0.33193529059316956, 0.3421210305572199, 0.35230677052127024, 0.36668663870581186, 0.3834631515877771, 0.39005392450569204, 0.39125224685440385, 0.40143798681845416, 0.4343918514080288, 0.46554823247453564, 0.5044937088076693, 0.5775913720790893, 0.646494907130018, 0.6944278010784901, 0.7633313361294188, 0.8124625524266027, 0.8484122228879568, 0.8753744757339724, 0.9173157579388855, 0.932893948472139, 0.9382863990413421], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2852.gap.json b/pfam_gap_rates/DUF2852.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2644b63857da69477225e87f38948a1257ee0737
--- /dev/null
+++ b/pfam_gap_rates/DUF2852.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2852", "n_seqs": 108, "length": 132, "gap_rates": [0.5555555555555556, 0.2222222222222222, 0.21296296296296297, 0.14814814814814814, 0.1111111111111111, 0.10185185185185185, 0.09259259259259259, 0.08333333333333333, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.046296296296296294, 0.046296296296296294, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.5925925925925926, 0.5740740740740741, 0.5833333333333334, 0.39814814814814814, 0.9444444444444444, 0.9166666666666666, 0.6018518518518519, 0.5833333333333334, 0.5370370370370371, 0.5092592592592593, 0.5092592592592593, 0.5, 0.48148148148148145, 0.46296296296296297, 0.4351851851851852, 0.39814814814814814, 0.37962962962962965, 0.35185185185185186, 0.2777777777777778, 0.08333333333333333, 0.07407407407407407, 0.05555555555555555, 0.08333333333333333, 0.07407407407407407, 0.07407407407407407, 0.12037037037037036, 0.12962962962962962, 0.16666666666666666, 0.9074074074074074, 0.6111111111111112, 0.4537037037037037, 0.2962962962962963, 0.19444444444444445, 0.12962962962962962, 0.10185185185185185, 0.07407407407407407, 0.05555555555555555, 0.037037037037037035, 0.027777777777777776, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.5555555555555556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2905.gap.json b/pfam_gap_rates/DUF2905.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70d24422b7e521809bdafe88fc1df46584e49545
--- /dev/null
+++ b/pfam_gap_rates/DUF2905.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2905", "n_seqs": 368, "length": 68, "gap_rates": [0.46467391304347827, 0.08967391304347826, 0.04076086956521739, 0.03260869565217391, 0.02717391304347826, 0.02717391304347826, 0.021739130434782608, 0.019021739130434784, 0.016304347826086956, 0.01358695652173913, 0.01358695652173913, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.1331521739130435, 0.12771739130434784, 0.125, 0.8858695652173914, 0.6222826086956522, 0.06793478260869565, 0.907608695652174, 0.9402173913043478, 0.7961956521739131, 0.059782608695652176, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.002717391304347826, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.008152173913043478, 0.008152173913043478, 0.010869565217391304, 0.019021739130434784, 0.1983695652173913], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2922.gap.json b/pfam_gap_rates/DUF2922.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a78583d7746216cf45732d1938c768bac60c478c
--- /dev/null
+++ b/pfam_gap_rates/DUF2922.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2922", "n_seqs": 370, "length": 68, "gap_rates": [0.37027027027027026, 0.1783783783783784, 0.07837837837837838, 0.06486486486486487, 0.04864864864864865, 0.01891891891891892, 0.016216216216216217, 0.013513513513513514, 0.010810810810810811, 0.010810810810810811, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002702702702702703, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.016216216216216217, 0.016216216216216217, 0.005405405405405406, 0.005405405405405406, 0.010810810810810811, 0.07297297297297298, 0.07027027027027027, 0.062162162162162166, 0.043243243243243246, 0.7567567567567568, 0.02702702702702703, 0.016216216216216217, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.02702702702702703, 0.03513513513513514, 0.03783783783783784, 0.043243243243243246, 0.05405405405405406, 0.08648648648648649, 0.14864864864864866, 0.3810810810810811], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2971.gap.json b/pfam_gap_rates/DUF2971.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e1562326b577524f4faf70276dfe6a021c1b381
--- /dev/null
+++ b/pfam_gap_rates/DUF2971.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2971", "n_seqs": 264, "length": 143, "gap_rates": [0.041666666666666664, 0.015151515151515152, 0.011363636363636364, 0.011363636363636364, 0.007575757575757576, 0.003787878787878788, 0.003787878787878788, 0.015151515151515152, 0.10606060606060606, 0.011363636363636364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.946969696969697, 0.0, 0.14015151515151514, 0.14015151515151514, 0.125, 0.11363636363636363, 0.0946969696969697, 0.0946969696969697, 0.07575757575757576, 0.04924242424242424, 0.03787878787878788, 0.041666666666666664, 0.07954545454545454, 0.10227272727272728, 0.25757575757575757, 0.29545454545454547, 0.5075757575757576, 0.5037878787878788, 0.4583333333333333, 0.7121212121212122, 0.75, 0.8181818181818182, 0.8295454545454546, 0.8636363636363636, 0.8825757575757576, 0.9242424242424242, 0.9393939393939394, 0.946969696969697, 0.946969696969697, 0.946969696969697, 0.946969696969697, 0.9393939393939394, 0.9356060606060606, 0.8939393939393939, 0.8787878787878788, 0.8522727272727273, 0.821969696969697, 0.7878787878787878, 0.7234848484848485, 0.6704545454545454, 0.01893939393939394, 0.015151515151515152, 0.011363636363636364, 0.011363636363636364, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.015151515151515152, 0.01893939393939394, 0.01893939393939394, 0.01893939393939394, 0.01893939393939394, 0.01893939393939394, 0.01893939393939394, 0.01893939393939394, 0.06818181818181818, 0.05303030303030303, 0.041666666666666664, 0.03409090909090909, 0.9204545454545454, 0.9318181818181818, 0.9393939393939394, 0.946969696969697, 0.9318181818181818, 0.928030303030303, 0.9166666666666666, 0.2803030303030303, 0.42045454545454547, 0.3939393939393939, 0.3712121212121212, 0.36363636363636365, 0.39015151515151514, 0.36742424242424243, 0.36742424242424243, 0.1553030303030303, 0.3560606060606061, 0.38636363636363635, 0.44696969696969696, 0.48863636363636365, 0.5265151515151515, 0.5681818181818182, 0.6060606060606061, 0.6515151515151515, 0.678030303030303, 0.7159090909090909, 0.7765151515151515, 0.8143939393939394, 0.8636363636363636, 0.8977272727272727, 0.9204545454545454, 0.9356060606060606, 0.9356060606060606, 0.9166666666666666, 0.8825757575757576, 0.8371212121212122, 0.7878787878787878, 0.75, 0.6931818181818182, 0.6628787878787878, 0.6477272727272727, 0.5946969696969697, 0.5454545454545454, 0.5075757575757576, 0.4583333333333333, 0.42424242424242425, 0.36742424242424243, 0.3522727272727273, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.12878787878787878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2975.gap.json b/pfam_gap_rates/DUF2975.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd0c96773fd890009dc5a690842797786c720349
--- /dev/null
+++ b/pfam_gap_rates/DUF2975.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3000.gap.json b/pfam_gap_rates/DUF3000.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6facb8b432dec9aa78be2ed029f88b3f96079421
--- /dev/null
+++ b/pfam_gap_rates/DUF3000.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3089.gap.json b/pfam_gap_rates/DUF3089.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ab41f44dcae619e30c7c09e65006f392a96b65f
--- /dev/null
+++ b/pfam_gap_rates/DUF3089.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3090.gap.json b/pfam_gap_rates/DUF3090.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4c1c1210d33b9ad5587a14b239d969ff09dfd98
--- /dev/null
+++ b/pfam_gap_rates/DUF3090.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3093.gap.json b/pfam_gap_rates/DUF3093.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e66a9ae1915b6b10c9d4e35601762d0d4d3f990
--- /dev/null
+++ b/pfam_gap_rates/DUF3093.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3093", "n_seqs": 175, "length": 151, "gap_rates": [0.8285714285714286, 0.10857142857142857, 0.09714285714285714, 0.09142857142857143, 0.09142857142857143, 0.08, 0.08, 0.05714285714285714, 0.05142857142857143, 0.05142857142857143, 0.04, 0.04, 0.04, 0.03428571428571429, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.37714285714285717, 0.36, 0.3657142857142857, 0.9028571428571428, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.02857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.02857142857142857, 0.02857142857142857, 0.022857142857142857, 0.022857142857142857, 0.017142857142857144, 0.017142857142857144, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.6285714285714286, 0.6457142857142857, 0.9371428571428572, 0.6342857142857142, 0.6057142857142858, 0.33714285714285713, 0.022857142857142857, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.022857142857142857, 0.022857142857142857, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.02857142857142857, 0.7542857142857143, 0.7828571428571428, 0.8114285714285714, 0.7657142857142857, 0.7257142857142858, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.03428571428571429, 0.04, 0.04, 0.05714285714285714, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05714285714285714, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06857142857142857, 0.06857142857142857, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08, 0.08571428571428572, 0.08571428571428572, 0.08, 0.08, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08571428571428572, 0.18285714285714286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3097.gap.json b/pfam_gap_rates/DUF3097.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19e429946370a8bedf18e2c78e462e222f62994a
--- /dev/null
+++ b/pfam_gap_rates/DUF3097.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3109.gap.json b/pfam_gap_rates/DUF3109.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..091c90195ef7e4eb2f800dd135617506a6fdc5d3
--- /dev/null
+++ b/pfam_gap_rates/DUF3109.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3109", "n_seqs": 176, "length": 186, "gap_rates": [0.13636363636363635, 0.11363636363636363, 0.10227272727272728, 0.08522727272727272, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.0625, 0.0625, 0.056818181818181816, 0.056818181818181816, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.03409090909090909, 0.017045454545454544, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.011363636363636364, 0.017045454545454544, 0.005681818181818182, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.0625, 0.07386363636363637, 0.056818181818181816, 0.028409090909090908, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.011363636363636364, 0.017045454545454544, 0.011363636363636364, 0.011363636363636364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005681818181818182, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005681818181818182, 0.0, 0.011363636363636364, 0.005681818181818182, 0.045454545454545456, 0.028409090909090908, 0.011363636363636364, 0.011363636363636364, 0.9318181818181818, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.022727272727272728, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.022727272727272728, 0.017045454545454544, 0.8636363636363636, 0.017045454545454544, 0.017045454545454544, 0.028409090909090908, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.03977272727272727, 0.25, 0.11931818181818182, 0.07386363636363637, 0.06818181818181818, 0.0625, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.9431818181818182, 0.022727272727272728, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03409090909090909, 0.028409090909090908, 0.022727272727272728, 0.022727272727272728, 0.9261363636363636, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.028409090909090908, 0.045454545454545456, 0.045454545454545456, 0.05113636363636364, 0.8125, 0.08522727272727272, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.10227272727272728, 0.10227272727272728, 0.10795454545454546, 0.10227272727272728, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.08522727272727272, 0.09090909090909091, 0.09659090909090909, 0.09659090909090909, 0.09659090909090909, 0.09659090909090909, 0.09659090909090909, 0.11363636363636363, 0.4602272727272727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3124.gap.json b/pfam_gap_rates/DUF3124.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4baa403c4c16b86646b046fbf9bc9a76d0cef45f
--- /dev/null
+++ b/pfam_gap_rates/DUF3124.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3124", "n_seqs": 100, "length": 128, "gap_rates": [0.37, 0.24, 0.07, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.09, 0.91, 0.92, 0.93, 0.92, 0.89, 0.05, 0.06, 0.04, 0.03, 0.03, 0.05, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01, 0.02, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.05, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.05, 0.05, 0.05, 0.05, 0.05, 0.07, 0.08, 0.07, 0.07, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.09, 0.13, 0.33], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3145.gap.json b/pfam_gap_rates/DUF3145.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c64e8e6fc8034f6bae021d4eb47f2d1e4748c83
--- /dev/null
+++ b/pfam_gap_rates/DUF3145.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3145", "n_seqs": 193, "length": 157, "gap_rates": [0.15544041450777202, 0.09326424870466321, 0.08808290155440414, 0.06735751295336788, 0.06735751295336788, 0.06735751295336788, 0.06735751295336788, 0.06735751295336788, 0.06735751295336788, 0.06735751295336788, 0.06217616580310881, 0.05699481865284974, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.046632124352331605, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.046632124352331605, 0.05181347150259067, 0.04145077720207254, 0.04145077720207254, 0.04145077720207254, 0.031088082901554404, 0.031088082901554404, 0.031088082901554404, 0.031088082901554404, 0.031088082901554404, 0.031088082901554404, 0.031088082901554404, 0.031088082901554404, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.02072538860103627, 0.015544041450777202, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.025906735751295335, 0.025906735751295335, 0.010362694300518135, 0.010362694300518135, 0.025906735751295335, 0.010362694300518135, 0.010362694300518135, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.05699481865284974, 0.08808290155440414, 0.38341968911917096, 0.12953367875647667, 0.046632124352331605, 0.025906735751295335, 0.025906735751295335, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.025906735751295335, 0.031088082901554404, 0.046632124352331605, 0.05181347150259067, 0.05181347150259067, 0.06217616580310881, 0.06217616580310881, 0.06217616580310881, 0.06217616580310881, 0.07253886010362694, 0.19170984455958548], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3276.gap.json b/pfam_gap_rates/DUF3276.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e3e4a78262a31cfe4786f63ec06b1bed4192dbc
--- /dev/null
+++ b/pfam_gap_rates/DUF3276.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3276", "n_seqs": 151, "length": 134, "gap_rates": [0.7417218543046358, 0.695364238410596, 0.6423841059602649, 0.46357615894039733, 0.36423841059602646, 0.271523178807947, 0.2251655629139073, 0.2052980132450331, 0.19205298013245034, 0.11258278145695365, 0.052980132450331126, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.033112582781456956, 0.033112582781456956, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006622516556291391, 0.026490066225165563, 0.026490066225165563, 0.08609271523178808, 0.8807947019867549, 0.9072847682119205, 0.8543046357615894, 0.10596026490066225, 0.07947019867549669, 0.052980132450331126, 0.09933774834437085, 0.4304635761589404, 0.271523178807947, 0.2185430463576159, 0.06622516556291391, 0.052980132450331126, 0.039735099337748346, 0.033112582781456956, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.033112582781456956, 0.046357615894039736, 0.052980132450331126, 0.06622516556291391, 0.09933774834437085, 0.09933774834437085, 0.09933774834437085, 0.3973509933774834, 0.3973509933774834, 0.31788079470198677, 0.304635761589404, 0.2185430463576159, 0.25165562913907286, 0.25165562913907286, 0.2980132450331126, 0.2913907284768212, 0.271523178807947, 0.25165562913907286, 0.271523178807947, 0.2913907284768212, 0.2913907284768212, 0.2980132450331126, 0.32450331125827814, 0.37748344370860926, 0.4105960264900662, 0.46357615894039733, 0.5894039735099338, 0.6026490066225165, 0.6225165562913907, 0.6490066225165563, 0.6556291390728477, 0.6556291390728477, 0.6821192052980133, 0.6887417218543046, 0.7152317880794702, 0.7218543046357616, 0.7284768211920529, 0.7284768211920529, 0.7417218543046358, 0.7417218543046358, 0.7483443708609272, 0.7549668874172185, 0.7615894039735099, 0.7682119205298014, 0.7880794701986755, 0.8013245033112583, 0.8079470198675497, 0.8344370860927153, 0.8344370860927153, 0.8344370860927153, 0.8410596026490066, 0.8543046357615894, 0.8543046357615894, 0.8609271523178808], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3309.gap.json b/pfam_gap_rates/DUF3309.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a579dde680b1bf1744ff9c8545f9b47e0bfb588
--- /dev/null
+++ b/pfam_gap_rates/DUF3309.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3309", "n_seqs": 148, "length": 51, "gap_rates": [0.25, 0.08108108108108109, 0.05405405405405406, 0.02702702702702703, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.8851351351351351, 0.006756756756756757, 0.006756756756756757, 0.9256756756756757, 0.006756756756756757, 0.006756756756756757, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.02027027027027027, 0.02702702702702703, 0.07432432432432433, 0.11486486486486487, 0.16891891891891891], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3361.gap.json b/pfam_gap_rates/DUF3361.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9eba0efde79006873b04da8f9aee7e7bc329c358
--- /dev/null
+++ b/pfam_gap_rates/DUF3361.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3403.gap.json b/pfam_gap_rates/DUF3403.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..359161685ff124cd5e675ed9da10802a0c51c5a5
--- /dev/null
+++ b/pfam_gap_rates/DUF3403.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3413.gap.json b/pfam_gap_rates/DUF3413.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bf9aa60ca16f8a8bdf5de5cdfbfaeb85edb2bb6
--- /dev/null
+++ b/pfam_gap_rates/DUF3413.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF342.gap.json b/pfam_gap_rates/DUF342.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa3565d66dc282e1a1c4a3740f0c44f004df831d
--- /dev/null
+++ b/pfam_gap_rates/DUF342.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3425.gap.json b/pfam_gap_rates/DUF3425.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d54762804040d0dea286c4b15ecfaf1264f73b57
--- /dev/null
+++ b/pfam_gap_rates/DUF3425.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3425", "n_seqs": 451, "length": 192, "gap_rates": [0.8603104212860311, 0.6452328159645233, 0.623059866962306, 0.5831485587583148, 0.5543237250554324, 0.5454545454545454, 0.5055432372505543, 0.49889135254988914, 0.4722838137472284, 0.43458980044345896, 0.3968957871396896, 0.35698447893569846, 0.30155210643015523, 0.2549889135254989, 0.188470066518847, 0.13303769401330376, 0.8957871396895787, 0.08647450110864745, 0.050997782705099776, 0.04656319290465632, 0.026607538802660754, 0.011086474501108648, 0.008869179600886918, 0.008869179600886918, 0.008869179600886918, 0.008869179600886918, 0.008869179600886918, 0.008869179600886918, 0.019955654101995565, 0.008869179600886918, 0.0066518847006651885, 0.0066518847006651885, 0.0022172949002217295, 0.0022172949002217295, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0022172949002217295, 0.0022172949002217295, 0.0022172949002217295, 0.0022172949002217295, 0.0022172949002217295, 0.0022172949002217295, 0.0022172949002217295, 0.0022172949002217295, 0.0022172949002217295, 0.8736141906873615, 0.8403547671840355, 0.4190687361419069, 0.3215077605321508, 0.07095343680709534, 0.06651884700665188, 0.36807095343680707, 0.21951219512195122, 0.06208425720620843, 0.04212860310421286, 0.026607538802660754, 0.9246119733924612, 0.9246119733924612, 0.9246119733924612, 0.9246119733924612, 0.9356984478935698, 0.9490022172949002, 0.926829268292683, 0.9246119733924612, 0.9246119733924612, 0.9246119733924612, 0.9246119733924612, 0.028824833702882482, 0.03991130820399113, 0.037694013303769404, 0.037694013303769404, 0.037694013303769404, 0.037694013303769404, 0.03991130820399113, 0.04656319290465632, 0.0598669623059867, 0.5898004434589801, 0.6607538802660754, 0.6807095343680709, 0.70509977827051, 0.8070953436807096, 0.8603104212860311, 0.8913525498891353, 0.9246119733924612, 0.926829268292683, 0.926829268292683, 0.9312638580931264, 0.9312638580931264, 0.9334811529933481, 0.9356984478935698, 0.9379157427937915, 0.9379157427937915, 0.9401330376940134, 0.9445676274944568, 0.9490022172949002, 0.9423503325942351, 0.9401330376940134, 0.9379157427937915, 0.9356984478935698, 0.9356984478935698, 0.9334811529933481, 0.9312638580931264, 0.926829268292683, 0.926829268292683, 0.9246119733924612, 0.9246119733924612, 0.8869179600886918, 0.8403547671840355, 0.7139689578713969, 0.6829268292682927, 0.6740576496674058, 0.6363636363636364, 0.401330376940133, 0.057649667405764965, 0.07760532150776053, 0.07982261640798226, 0.082039911308204, 0.03547671840354767, 0.5210643015521065, 0.5388026607538803, 0.5631929046563193, 0.5720620842572062, 0.5809312638580931, 0.5986696230598669, 0.6297117516629712, 0.6452328159645233, 0.647450110864745, 0.6629711751662971, 0.6651884700665188, 0.7339246119733924, 0.9046563192904656, 0.917960088691796, 0.9356984478935698, 0.9379157427937915, 0.9423503325942351, 0.9490022172949002, 0.9490022172949002, 0.9490022172949002, 0.9490022172949002, 0.9423503325942351, 0.9379157427937915, 0.9356984478935698, 0.9334811529933481, 0.9135254988913526, 0.88470066518847, 0.7028824833702882, 0.6629711751662971, 0.6518847006651884, 0.647450110864745, 0.6341463414634146, 0.6053215077605322, 0.5898004434589801, 0.5809312638580931, 0.5676274944567627, 0.5565410199556541, 0.5343680709534369, 0.35033259423503327, 0.04434589800443459, 0.082039911308204, 0.04656319290465632, 0.04656319290465632, 0.04434589800443459, 0.04656319290465632, 0.04656319290465632, 0.04656319290465632, 0.04656319290465632, 0.04656319290465632, 0.04656319290465632, 0.04656319290465632, 0.050997782705099776, 0.05321507760532151, 0.05321507760532151, 0.057649667405764965, 0.06208425720620843, 0.06430155210643015, 0.06651884700665188, 0.06651884700665188, 0.07982261640798226, 0.09312638580931264, 0.13747228381374724, 0.18181818181818182, 0.2572062084257206, 0.5764966740576497, 0.7117516629711752, 0.8181818181818182, 0.8869179600886918], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3429.gap.json b/pfam_gap_rates/DUF3429.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..421a62172ba472b4bd7d3ab0416c24728fa0f078
--- /dev/null
+++ b/pfam_gap_rates/DUF3429.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3444.gap.json b/pfam_gap_rates/DUF3444.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..858c9c7e6d60d86e09b1a2b911cc441e30164a1b
--- /dev/null
+++ b/pfam_gap_rates/DUF3444.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3463.gap.json b/pfam_gap_rates/DUF3463.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae3512c055935bae16f557796288f44d37d220e3
--- /dev/null
+++ b/pfam_gap_rates/DUF3463.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3463", "n_seqs": 201, "length": 142, "gap_rates": [0.13432835820895522, 0.04975124378109453, 0.03980099502487562, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.12935323383084577, 0.06965174129353234, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.029850746268656716, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.014925373134328358, 0.01990049751243781, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.01990049751243781, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.01990049751243781, 0.01990049751243781, 0.9402985074626866, 0.9402985074626866, 0.9402985074626866, 0.014925373134328358, 0.009950248756218905, 0.0945273631840796, 0.7512437810945274, 0.845771144278607, 0.3383084577114428, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.014925373134328358, 0.004975124378109453, 0.004975124378109453, 0.009950248756218905, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.945273631840796, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.9104477611940298, 0.03980099502487562, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.01990049751243781, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.014925373134328358, 0.7611940298507462, 0.04477611940298507, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.029850746268656716, 0.03980099502487562, 0.05472636815920398, 0.15422885572139303, 0.18407960199004975, 0.19900497512437812, 0.19900497512437812, 0.24378109452736318, 0.31840796019900497, 0.7661691542288557], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3475.gap.json b/pfam_gap_rates/DUF3475.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..daf01149f5abe2c6563f108a964a2700d733c1b3
--- /dev/null
+++ b/pfam_gap_rates/DUF3475.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3475", "n_seqs": 268, "length": 57, "gap_rates": [0.09328358208955224, 0.06716417910447761, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.007462686567164179, 0.011194029850746268, 0.007462686567164179, 0.007462686567164179, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.007462686567164179, 0.007462686567164179, 0.0037313432835820895, 0.0037313432835820895, 0.0, 0.0, 0.0, 0.0, 0.018656716417910446, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.014925373134328358, 0.018656716417910446, 0.018656716417910446, 0.026119402985074626, 0.27238805970149255], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3479.gap.json b/pfam_gap_rates/DUF3479.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6f24f80e0d84c30dca581f21eac952253ab8db1
--- /dev/null
+++ b/pfam_gap_rates/DUF3479.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3506.gap.json b/pfam_gap_rates/DUF3506.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5892cbcf6b92bf5890877ef4524ec5e9c5d8f8bc
--- /dev/null
+++ b/pfam_gap_rates/DUF3506.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3536.gap.json b/pfam_gap_rates/DUF3536.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d54e28cce5d22b371878d2d46ae95147d4dd07f
--- /dev/null
+++ b/pfam_gap_rates/DUF3536.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3543.gap.json b/pfam_gap_rates/DUF3543.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e96b9d40e0d980c518081508fc1b34a364e97c9
--- /dev/null
+++ b/pfam_gap_rates/DUF3543.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3566.gap.json b/pfam_gap_rates/DUF3566.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a86982ce1dc954b3a8a6f3332eef8da524603f88
--- /dev/null
+++ b/pfam_gap_rates/DUF3566.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3596.gap.json b/pfam_gap_rates/DUF3596.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d687d3ca50ec4fc5de2f58ecb82182c82ed095cc
--- /dev/null
+++ b/pfam_gap_rates/DUF3596.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3596", "n_seqs": 100, "length": 75, "gap_rates": [0.71, 0.41, 0.27, 0.18, 0.17, 0.15, 0.11, 0.94, 0.94, 0.55, 0.42, 0.08, 0.08, 0.06, 0.06, 0.06, 0.06, 0.05, 0.05, 0.04, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.95, 0.95, 0.95, 0.95, 0.91, 0.03, 0.03, 0.03, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.01, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01, 0.02, 0.03, 0.03, 0.03, 0.74, 0.74, 0.11, 0.13, 0.14, 0.17, 0.2, 0.23, 0.29, 0.46, 0.68], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3632.gap.json b/pfam_gap_rates/DUF3632.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2aa9e41031f0dbda0c72690dfff3f2313ed18d9c
--- /dev/null
+++ b/pfam_gap_rates/DUF3632.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3670.gap.json b/pfam_gap_rates/DUF3670.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da46bad9069c7073b708e07108dde1c96640922a
--- /dev/null
+++ b/pfam_gap_rates/DUF3670.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3684.gap.json b/pfam_gap_rates/DUF3684.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e4a178d3547b3d1ab04b001f269c7aa2c2e54b6
--- /dev/null
+++ b/pfam_gap_rates/DUF3684.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3767.gap.json b/pfam_gap_rates/DUF3767.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63306179b6d9d53514207dc0ecf4e33772a845ce
--- /dev/null
+++ b/pfam_gap_rates/DUF3767.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3767", "n_seqs": 176, "length": 105, "gap_rates": [0.9431818181818182, 0.6590909090909091, 0.5511363636363636, 0.4772727272727273, 0.4715909090909091, 0.4602272727272727, 0.4602272727272727, 0.44886363636363635, 0.42613636363636365, 0.42045454545454547, 0.42045454545454547, 0.3806818181818182, 0.9375, 0.3522727272727273, 0.3352272727272727, 0.3181818181818182, 0.26704545454545453, 0.23863636363636365, 0.8863636363636364, 0.875, 0.08522727272727272, 0.05113636363636364, 0.017045454545454544, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.022727272727272728, 0.017045454545454544, 0.022727272727272728, 0.9034090909090909, 0.8977272727272727, 0.022727272727272728, 0.022727272727272728, 0.056818181818181816, 0.045454545454545456, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.05113636363636364, 0.0625, 0.06818181818181818, 0.07386363636363637, 0.09659090909090909, 0.19318181818181818, 0.26704545454545453, 0.29545454545454547, 0.3409090909090909, 0.4090909090909091, 0.5, 0.6477272727272727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3772.gap.json b/pfam_gap_rates/DUF3772.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56d677a783bff349c442932cd7b0e00b9c531685
--- /dev/null
+++ b/pfam_gap_rates/DUF3772.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3772", "n_seqs": 108, "length": 63, "gap_rates": [0.6388888888888888, 0.3055555555555556, 0.09259259259259259, 0.05555555555555555, 0.046296296296296294, 0.037037037037037035, 0.037037037037037035, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.027777777777777776, 0.037037037037037035, 0.037037037037037035, 0.06481481481481481, 0.09259259259259259, 0.1111111111111111, 0.1388888888888889, 0.1574074074074074, 0.17592592592592593, 0.2037037037037037, 0.2037037037037037, 0.25925925925925924, 0.32407407407407407, 0.4537037037037037, 0.5833333333333334, 0.8240740740740741], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3783.gap.json b/pfam_gap_rates/DUF3783.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af44a84b0e2f1750bbf231ee30e8a389e8f96250
--- /dev/null
+++ b/pfam_gap_rates/DUF3783.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3783", "n_seqs": 226, "length": 58, "gap_rates": [0.24336283185840707, 0.048672566371681415, 0.030973451327433628, 0.022123893805309734, 0.004424778761061947, 0.004424778761061947, 0.008849557522123894, 0.004424778761061947, 0.022123893805309734, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.035398230088495575, 0.004424778761061947, 0.030973451327433628, 0.9469026548672567, 0.5929203539823009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.017699115044247787, 0.10176991150442478, 0.2831858407079646], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3793.gap.json b/pfam_gap_rates/DUF3793.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3640a89d35c64563d33fc1a13a7d9fb332160b3
--- /dev/null
+++ b/pfam_gap_rates/DUF3793.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3793", "n_seqs": 290, "length": 190, "gap_rates": [0.31724137931034485, 0.16206896551724137, 0.06896551724137931, 0.034482758620689655, 0.027586206896551724, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.02413793103448276, 0.7310344827586207, 0.7517241379310344, 0.7551724137931034, 0.7689655172413793, 0.7620689655172413, 0.7517241379310344, 0.7517241379310344, 0.7310344827586207, 0.02413793103448276, 0.05862068965517241, 0.05517241379310345, 0.02413793103448276, 0.47586206896551725, 0.4896551724137931, 0.5172413793103449, 0.6172413793103448, 0.9103448275862069, 0.5275862068965518, 0.503448275862069, 0.47586206896551725, 0.2655172413793103, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.9379310344827586, 0.017241379310344827, 0.020689655172413793, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.034482758620689655, 0.020689655172413793, 0.017241379310344827, 0.020689655172413793, 0.017241379310344827, 0.017241379310344827, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.017241379310344827, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.017241379310344827, 0.017241379310344827, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.013793103448275862, 0.013793103448275862, 0.5620689655172414, 0.013793103448275862, 0.013793103448275862, 0.027586206896551724, 0.013793103448275862, 0.013793103448275862, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.013793103448275862, 0.010344827586206896, 0.1, 0.013793103448275862, 0.013793103448275862, 0.7344827586206897, 0.7448275862068966, 0.7620689655172413, 0.7379310344827587, 0.3, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.06551724137931035, 0.041379310344827586, 0.017241379310344827, 0.017241379310344827, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.010344827586206896, 0.017241379310344827, 0.03793103448275862, 0.05172413793103448, 0.06551724137931035, 0.0896551724137931, 0.09655172413793103, 0.12413793103448276, 0.15517241379310345, 0.19310344827586207, 0.2206896551724138, 0.2827586206896552, 0.8206896551724138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3824.gap.json b/pfam_gap_rates/DUF3824.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4fc8c93f6eeb72b81935ca11b178a6479ff0f003
--- /dev/null
+++ b/pfam_gap_rates/DUF3824.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3824", "n_seqs": 110, "length": 186, "gap_rates": [0.43636363636363634, 0.33636363636363636, 0.3, 0.2818181818181818, 0.2545454545454545, 0.22727272727272727, 0.22727272727272727, 0.20909090909090908, 0.2, 0.17272727272727273, 0.15454545454545454, 0.12727272727272726, 0.11818181818181818, 0.11818181818181818, 0.20909090909090908, 0.16363636363636364, 0.13636363636363635, 0.12727272727272726, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.11818181818181818, 0.10909090909090909, 0.11818181818181818, 0.1, 0.08181818181818182, 0.07272727272727272, 0.9272727272727272, 0.045454545454545456, 0.045454545454545456, 0.06363636363636363, 0.06363636363636363, 0.03636363636363636, 0.045454545454545456, 0.07272727272727272, 0.23636363636363636, 0.7636363636363637, 0.8181818181818182, 0.8727272727272727, 0.9090909090909091, 0.9363636363636364, 0.9181818181818182, 0.8909090909090909, 0.8363636363636363, 0.8, 0.7545454545454545, 0.11818181818181818, 0.10909090909090909, 0.11818181818181818, 0.12727272727272726, 0.12727272727272726, 0.15454545454545454, 0.16363636363636364, 0.18181818181818182, 0.16363636363636364, 0.19090909090909092, 0.19090909090909092, 0.2818181818181818, 0.8, 0.4909090909090909, 0.43636363636363634, 0.9454545454545454, 0.2727272727272727, 0.3, 0.2909090909090909, 0.3090909090909091, 0.3181818181818182, 0.32727272727272727, 0.32727272727272727, 0.9181818181818182, 0.4818181818181818, 0.4090909090909091, 0.4090909090909091, 0.38181818181818183, 0.39090909090909093, 0.39090909090909093, 0.4, 0.4090909090909091, 0.41818181818181815, 0.6181818181818182, 0.7818181818181819, 0.6090909090909091, 0.5727272727272728, 0.5727272727272728, 0.5454545454545454, 0.44545454545454544, 0.45454545454545453, 0.4818181818181818, 0.5, 0.5363636363636364, 0.6272727272727273, 0.6818181818181818, 0.9272727272727272, 0.9363636363636364, 0.9363636363636364, 0.9181818181818182, 0.5636363636363636, 0.5727272727272728, 0.5727272727272728, 0.5818181818181818, 0.6090909090909091, 0.5909090909090909, 0.5818181818181818, 0.5454545454545454, 0.5363636363636364, 0.5363636363636364, 0.5363636363636364, 0.5454545454545454, 0.5454545454545454, 0.5545454545454546, 0.9, 0.9181818181818182, 0.9272727272727272, 0.9363636363636364, 0.9272727272727272, 0.9090909090909091, 0.9, 0.6454545454545455, 0.6636363636363637, 0.6545454545454545, 0.9, 0.8636363636363636, 0.7454545454545455, 0.7454545454545455, 0.7090909090909091, 0.6909090909090909, 0.6818181818181818, 0.6727272727272727, 0.6272727272727273, 0.6636363636363637, 0.6363636363636364, 0.6181818181818182, 0.6272727272727273, 0.6181818181818182, 0.6090909090909091, 0.9454545454545454, 0.6272727272727273, 0.6181818181818182, 0.6090909090909091, 0.6090909090909091, 0.6090909090909091, 0.9272727272727272, 0.6181818181818182, 0.6181818181818182, 0.6181818181818182, 0.6363636363636364, 0.9272727272727272, 0.6545454545454545, 0.6545454545454545, 0.6545454545454545, 0.7, 0.8818181818181818, 0.7, 0.6818181818181818, 0.7454545454545455, 0.7272727272727273, 0.7181818181818181, 0.7, 0.6909090909090909, 0.6909090909090909, 0.8909090909090909, 0.9272727272727272, 0.8909090909090909, 0.6909090909090909, 0.7, 0.9090909090909091, 0.9363636363636364, 0.8727272727272727, 0.7090909090909091, 0.7181818181818181, 0.7545454545454545, 0.7545454545454545, 0.7818181818181819, 0.7818181818181819, 0.7727272727272727, 0.7727272727272727, 0.7727272727272727, 0.7818181818181819, 0.7818181818181819, 0.8454545454545455, 0.8727272727272727, 0.8818181818181818, 0.8818181818181818, 0.8818181818181818, 0.8909090909090909, 0.9090909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3835.gap.json b/pfam_gap_rates/DUF3835.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a652f7acca19a5ba986e1c9dbf5a7b73a9349e3f
--- /dev/null
+++ b/pfam_gap_rates/DUF3835.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3835", "n_seqs": 153, "length": 108, "gap_rates": [0.5686274509803921, 0.46405228758169936, 0.42483660130718953, 0.39869281045751637, 0.39215686274509803, 0.39215686274509803, 0.38562091503267976, 0.38562091503267976, 0.3790849673202614, 0.37254901960784315, 0.9215686274509803, 0.8366013071895425, 0.6666666666666666, 0.6209150326797386, 0.4444444444444444, 0.40522875816993464, 0.3790849673202614, 0.3333333333333333, 0.30718954248366015, 0.27450980392156865, 0.2549019607843137, 0.24836601307189543, 0.24836601307189543, 0.9477124183006536, 0.9084967320261438, 0.24836601307189543, 0.24836601307189543, 0.24836601307189543, 0.24836601307189543, 0.24836601307189543, 0.24836601307189543, 0.24836601307189543, 0.24836601307189543, 0.2549019607843137, 0.2549019607843137, 0.2549019607843137, 0.2549019607843137, 0.24836601307189543, 0.24836601307189543, 0.24836601307189543, 0.24836601307189543, 0.24183006535947713, 0.23529411764705882, 0.23529411764705882, 0.23529411764705882, 0.2222222222222222, 0.24836601307189543, 0.24836601307189543, 0.23529411764705882, 0.9477124183006536, 0.8888888888888888, 0.24836601307189543, 0.24836601307189543, 0.28104575163398693, 0.2679738562091503, 0.8954248366013072, 0.9019607843137255, 0.9150326797385621, 0.9281045751633987, 0.9477124183006536, 0.9477124183006536, 0.934640522875817, 0.9150326797385621, 0.9084967320261438, 0.9019607843137255, 0.8954248366013072, 0.24836601307189543, 0.32679738562091504, 0.49673202614379086, 0.7908496732026143, 0.8431372549019608, 0.9477124183006536, 0.9215686274509803, 0.8235294117647058, 0.7581699346405228, 0.19607843137254902, 0.1895424836601307, 0.17647058823529413, 0.16339869281045752, 0.1568627450980392, 0.1437908496732026, 0.12418300653594772, 0.11764705882352941, 0.1111111111111111, 0.09803921568627451, 0.09803921568627451, 0.7843137254901961, 0.9281045751633987, 0.8562091503267973, 0.5555555555555556, 0.0718954248366013, 0.13071895424836602, 0.0784313725490196, 0.0392156862745098, 0.9150326797385621, 0.9215686274509803, 0.869281045751634, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.032679738562091505, 0.0392156862745098, 0.0392156862745098, 0.1111111111111111, 0.35947712418300654], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3842.gap.json b/pfam_gap_rates/DUF3842.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8b14bb4ea89b6141b0efdd023baa48067752d72
--- /dev/null
+++ b/pfam_gap_rates/DUF3842.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3854.gap.json b/pfam_gap_rates/DUF3854.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d995f2d60c8382e33707089c00b4799b2e3872ad
--- /dev/null
+++ b/pfam_gap_rates/DUF3854.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3854", "n_seqs": 131, "length": 136, "gap_rates": [0.44274809160305345, 0.4122137404580153, 0.40458015267175573, 0.366412213740458, 0.3511450381679389, 0.31297709923664124, 0.2900763358778626, 0.2824427480916031, 0.44274809160305345, 0.2748091603053435, 0.26717557251908397, 0.26717557251908397, 0.09923664122137404, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.8549618320610687, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.17557251908396945, 0.24427480916030533, 0.44274809160305345, 0.31297709923664124, 0.37404580152671757, 0.48854961832061067, 0.48854961832061067, 0.4580152671755725, 0.42748091603053434, 0.4198473282442748, 0.4198473282442748, 0.4198473282442748, 0.3969465648854962, 0.26717557251908397, 0.9465648854961832, 0.12213740458015267, 0.10687022900763359, 0.07633587786259542, 0.061068702290076333, 0.06870229007633588, 0.06870229007633588, 0.07633587786259542, 0.10687022900763359, 0.10687022900763359, 0.10687022900763359, 0.11450381679389313, 0.1984732824427481, 0.10687022900763359, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.4122137404580153, 0.4122137404580153, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.030534351145038167, 0.03816793893129771, 0.030534351145038167, 0.022900763358778626, 0.9389312977099237, 0.022900763358778626, 0.022900763358778626, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.35877862595419846, 0.8931297709923665, 0.8854961832061069, 0.15267175572519084, 0.916030534351145, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.061068702290076333, 0.11450381679389313, 0.2366412213740458, 0.2900763358778626, 0.35877862595419846, 0.5038167938931297, 0.9389312977099237], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3899.gap.json b/pfam_gap_rates/DUF3899.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..447a308a5707340f16f2551f45a72b4370295a24
--- /dev/null
+++ b/pfam_gap_rates/DUF3899.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3899", "n_seqs": 113, "length": 104, "gap_rates": [0.34513274336283184, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.02654867256637168, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.008849557522123894, 0.07964601769911504, 0.07964601769911504, 0.37168141592920356, 0.415929203539823, 0.49557522123893805, 0.48672566371681414, 0.49557522123893805, 0.7345132743362832, 0.8849557522123894, 0.9203539823008849, 0.9026548672566371, 0.7964601769911505, 0.6637168141592921, 0.13274336283185842, 0.10619469026548672, 0.07964601769911504, 0.07964601769911504, 0.05309734513274336, 0.04424778761061947, 0.035398230088495575, 0.035398230088495575, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.05309734513274336, 0.7964601769911505, 0.8761061946902655, 0.9026548672566371, 0.9292035398230089, 0.8938053097345132, 0.831858407079646, 0.7876106194690266, 0.12389380530973451, 0.24778761061946902, 0.26548672566371684, 0.26548672566371684, 0.584070796460177, 0.8230088495575221, 0.9380530973451328, 0.8849557522123894, 0.672566371681416, 0.48672566371681414, 0.061946902654867256, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.05309734513274336, 0.061946902654867256, 0.061946902654867256, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.1504424778761062, 0.26548672566371684, 0.7256637168141593], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF390.gap.json b/pfam_gap_rates/DUF390.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9ac76e47d6d96aa43bcc562fc9c7f4c3b75d245
--- /dev/null
+++ b/pfam_gap_rates/DUF390.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3991.gap.json b/pfam_gap_rates/DUF3991.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41b30fe1921a6b3bb493170056ed0a48151cf9d8
--- /dev/null
+++ b/pfam_gap_rates/DUF3991.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3991", "n_seqs": 233, "length": 94, "gap_rates": [0.2875536480686695, 0.055793991416309016, 0.04721030042918455, 0.04291845493562232, 0.02575107296137339, 0.2918454935622318, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017167381974248927, 0.017167381974248927, 0.012875536480686695, 0.017167381974248927, 0.008583690987124463, 0.0, 0.0, 0.0, 0.8927038626609443, 0.927038626609442, 0.9313304721030042, 0.9484978540772532, 0.9484978540772532, 0.9313304721030042, 0.927038626609442, 0.9184549356223176, 0.44635193133047213, 0.0, 0.012875536480686695, 0.0, 0.9484978540772532, 0.004291845493562232, 0.9184549356223176, 0.9484978540772532, 0.9184549356223176, 0.9141630901287554, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.11158798283261803, 0.012875536480686695, 0.012875536480686695, 0.012875536480686695, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.8283261802575107, 0.944206008583691, 0.9141630901287554, 0.6523605150214592, 0.4892703862660944, 0.38197424892703863, 0.18025751072961374, 0.15021459227467812, 0.02575107296137339, 0.030042918454935622, 0.03862660944206009, 0.03862660944206009, 0.04291845493562232, 0.05150214592274678, 0.055793991416309016, 0.060085836909871244, 0.630901287553648, 0.7939914163090128, 0.09012875536480687, 0.07725321888412018, 0.09871244635193133, 0.12017167381974249, 0.13304721030042918, 0.15450643776824036, 0.2017167381974249, 0.2446351931330472, 0.3948497854077253, 0.7424892703862661, 0.7381974248927039, 0.8283261802575107], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4012.gap.json b/pfam_gap_rates/DUF4012.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ca94c55758af4dbf258debd55a4053255f1ab69
--- /dev/null
+++ b/pfam_gap_rates/DUF4012.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4012", "n_seqs": 484, "length": 163, "gap_rates": [0.6921487603305785, 0.4090909090909091, 0.11570247933884298, 0.05578512396694215, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.026859504132231406, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.022727272727272728, 0.024793388429752067, 0.024793388429752067, 0.02066115702479339, 0.02066115702479339, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.024793388429752067, 0.03305785123966942, 0.03305785123966942, 0.026859504132231406, 0.9214876033057852, 0.9256198347107438, 0.8760330578512396, 0.29545454545454547, 0.22727272727272727, 0.10330578512396695, 0.07851239669421488, 0.07231404958677685, 0.08471074380165289, 0.78099173553719, 0.10950413223140495, 0.0743801652892562, 0.07231404958677685, 0.05785123966942149, 0.05991735537190083, 0.878099173553719, 0.3202479338842975, 0.9297520661157025, 0.9380165289256198, 0.8987603305785123, 0.16942148760330578, 0.1115702479338843, 0.0743801652892562, 0.06198347107438017, 0.05578512396694215, 0.06611570247933884, 0.08471074380165289, 0.1487603305785124, 0.8801652892561983, 0.9194214876033058, 0.8140495867768595, 0.0743801652892562, 0.05578512396694215, 0.049586776859504134, 0.05371900826446281, 0.047520661157024795, 0.049586776859504134, 0.05165289256198347, 0.07851239669421488, 0.07024793388429752, 0.08884297520661157, 0.07851239669421488, 0.8057851239669421, 0.05785123966942149, 0.05371900826446281, 0.0640495867768595, 0.05578512396694215, 0.03925619834710744, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03305785123966942, 0.030991735537190084, 0.030991735537190084, 0.030991735537190084, 0.028925619834710745, 0.028925619834710745, 0.028925619834710745, 0.028925619834710745, 0.030991735537190084, 0.03305785123966942, 0.03305785123966942, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.0371900826446281, 0.0640495867768595, 0.8842975206611571, 0.9421487603305785, 0.9338842975206612, 0.8636363636363636, 0.04338842975206612, 0.6900826446280992, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03305785123966942, 0.03305785123966942, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.03512396694214876, 0.0371900826446281, 0.0371900826446281, 0.03925619834710744, 0.03925619834710744, 0.04132231404958678, 0.04132231404958678, 0.04338842975206612, 0.04338842975206612, 0.045454545454545456, 0.049586776859504134, 0.049586776859504134, 0.049586776859504134, 0.05165289256198347, 0.05165289256198347, 0.2231404958677686, 0.8491735537190083, 0.07851239669421488, 0.128099173553719, 0.1446280991735537, 0.6673553719008265, 0.21074380165289255, 0.1652892561983471, 0.16735537190082644, 0.17148760330578514, 0.1962809917355372, 0.20867768595041322, 0.22520661157024793, 0.2809917355371901, 0.3140495867768595, 0.365702479338843, 0.390495867768595, 0.45041322314049587, 0.5144628099173554, 0.5557851239669421, 0.6466942148760331, 0.8326446280991735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4065.gap.json b/pfam_gap_rates/DUF4065.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..539644d5086818e98caa1efc21f38c7e0cd00b6d
--- /dev/null
+++ b/pfam_gap_rates/DUF4065.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4065", "n_seqs": 508, "length": 125, "gap_rates": [0.23228346456692914, 0.08267716535433071, 0.045275590551181105, 0.031496062992125984, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.02952755905511811, 0.02952755905511811, 0.025590551181102362, 0.01968503937007874, 0.023622047244094488, 0.021653543307086614, 0.017716535433070866, 0.017716535433070866, 0.015748031496062992, 0.013779527559055118, 0.013779527559055118, 0.013779527559055118, 0.013779527559055118, 0.013779527559055118, 0.011811023622047244, 0.013779527559055118, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.2618110236220472, 0.017716535433070866, 0.9448818897637795, 0.9448818897637795, 0.9173228346456693, 0.01968503937007874, 0.017716535433070866, 0.017716535433070866, 0.015748031496062992, 0.03740157480314961, 0.023622047244094488, 0.027559055118110236, 0.0531496062992126, 0.06496062992125984, 0.16535433070866143, 0.20275590551181102, 0.2677165354330709, 0.2736220472440945, 0.2578740157480315, 0.25196850393700787, 0.2283464566929134, 0.22244094488188976, 0.23031496062992127, 0.2125984251968504, 0.1968503937007874, 0.1968503937007874, 0.20275590551181102, 0.36220472440944884, 0.5216535433070866, 0.4547244094488189, 0.3799212598425197, 0.4015748031496063, 0.4035433070866142, 0.48031496062992124, 0.5334645669291339, 0.5118110236220472, 0.49015748031496065, 0.468503937007874, 0.468503937007874, 0.49606299212598426, 0.5196850393700787, 0.547244094488189, 0.4940944881889764, 0.6023622047244095, 0.5649606299212598, 0.5748031496062992, 0.5708661417322834, 0.5255905511811023, 0.3661417322834646, 0.8188976377952756, 0.8937007874015748, 0.9350393700787402, 0.9488188976377953, 0.9192913385826772, 0.8385826771653543, 0.7736220472440944, 0.051181102362204724, 0.04133858267716536, 0.04133858267716536, 0.04133858267716536, 0.04133858267716536, 0.04133858267716536, 0.04330708661417323, 0.04133858267716536, 0.04133858267716536, 0.04133858267716536, 0.04330708661417323, 0.045275590551181105, 0.045275590551181105, 0.045275590551181105, 0.045275590551181105, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.05511811023622047, 0.05708661417322835, 0.05905511811023622, 0.05905511811023622, 0.05905511811023622, 0.0610236220472441, 0.06496062992125984, 0.07086614173228346, 0.07677165354330709, 0.07874015748031496, 0.07874015748031496, 0.0984251968503937, 0.10433070866141732, 0.17913385826771652, 0.8484251968503937, 0.14960629921259844, 0.1732283464566929, 0.562992125984252], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4102.gap.json b/pfam_gap_rates/DUF4102.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71ec91f4a0b0e043bc84fc014de00d41c29e06fe
--- /dev/null
+++ b/pfam_gap_rates/DUF4102.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4102", "n_seqs": 1161, "length": 99, "gap_rates": [0.3031869078380706, 0.2248062015503876, 0.1937984496124031, 0.17657192075796727, 0.16279069767441862, 0.1429801894918174, 0.13608957795004306, 0.13092161929371232, 0.1438415159345392, 0.12919896640826872, 0.9440137812230835, 0.2041343669250646, 0.22566752799310938, 0.23858742463393626, 0.5590008613264428, 0.3479758828596038, 0.46856158484065463, 0.36003445305770887, 0.3479758828596038, 0.4280792420327304, 0.8621877691645133, 0.053402239448751075, 0.0611541774332472, 0.3652024117140396, 0.7054263565891473, 0.8380706287683032, 0.9009474590869939, 0.7484926787252368, 0.49440137812230833, 0.2859603789836348, 0.056847545219638244, 0.030146425495262703, 0.025839793281653745, 0.01808785529715762, 0.017226528854435832, 0.01636520241171404, 0.012919896640826873, 0.05598621877691645, 0.056847545219638244, 0.029285099052540915, 0.921619293712317, 0.008613264427217916, 0.0103359173126615, 0.007751937984496124, 0.008613264427217916, 0.0068906115417743325, 0.007751937984496124, 0.0068906115417743325, 0.024978466838931956, 0.03359173126614987, 0.0068906115417743325, 0.024978466838931956, 0.03531438415159346, 0.041343669250646, 0.05167958656330749, 0.7028423772609819, 0.9414298018949182, 0.8294573643410853, 0.053402239448751075, 0.04392764857881137, 0.03617571059431524, 0.03359173126614987, 0.024978466838931956, 0.0008613264427217916, 0.0017226528854435831, 0.002583979328165375, 0.007751937984496124, 0.0068906115417743325, 0.017226528854435832, 0.004306632213608958, 0.0034453057708871662, 0.0034453057708871662, 0.004306632213608958, 0.004306632213608958, 0.004306632213608958, 0.004306632213608958, 0.00516795865633075, 0.0068906115417743325, 0.007751937984496124, 0.007751937984496124, 0.008613264427217916, 0.009474590869939707, 0.01119724375538329, 0.017226528854435832, 0.02153316106804479, 0.024978466838931956, 0.025839793281653745, 0.030146425495262703, 0.03789836347975883, 0.05167958656330749, 0.059431524547803614, 0.06459948320413436, 0.06890611541774333, 0.08957795004306632, 0.12058570198105081, 0.1524547803617571, 0.20757967269595176, 0.40482342807924204, 0.9061154177433247], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF411.gap.json b/pfam_gap_rates/DUF411.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..576e6de61c1de28c5555acd2b5fc091dc0285222
--- /dev/null
+++ b/pfam_gap_rates/DUF411.gap.json
@@ -0,0 +1 @@
+{"family": "DUF411", "n_seqs": 421, "length": 71, "gap_rates": [0.49406175771971494, 0.42042755344418054, 0.31116389548693585, 0.24228028503562946, 0.18527315914489312, 0.15914489311163896, 0.1330166270783848, 0.12351543942992874, 0.13064133016627077, 0.0831353919239905, 0.057007125890736345, 0.030878859857482184, 0.014251781472684086, 0.011876484560570071, 0.011876484560570071, 0.011876484560570071, 0.011876484560570071, 0.011876484560570071, 0.019002375296912115, 0.011876484560570071, 0.009501187648456057, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.8978622327790974, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.004750593824228029, 0.0, 0.0, 0.0, 0.0023752969121140144, 0.0023752969121140144, 0.0023752969121140144, 0.0023752969121140144, 0.023752969121140142, 0.004750593824228029, 0.0023752969121140144, 0.0023752969121140144, 0.011876484560570071, 0.030878859857482184, 0.7885985748218527, 0.011876484560570071, 0.011876484560570071, 0.011876484560570071, 0.011876484560570071, 0.011876484560570071, 0.014251781472684086, 0.014251781472684086, 0.014251781472684086, 0.021377672209026127, 0.023752969121140142, 0.023752969121140142, 0.023752969121140142, 0.026128266033254157, 0.026128266033254157, 0.026128266033254157, 0.026128266033254157, 0.035629453681710214], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4142.gap.json b/pfam_gap_rates/DUF4142.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74b5913e05bb418d91cad12d0b28cd203f8c846d
--- /dev/null
+++ b/pfam_gap_rates/DUF4142.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4142", "n_seqs": 383, "length": 144, "gap_rates": [0.4751958224543081, 0.23759791122715404, 0.1514360313315927, 0.1227154046997389, 0.09660574412532637, 0.08093994778067885, 0.0783289817232376, 0.0731070496083551, 0.06266318537859007, 0.06266318537859007, 0.06005221932114883, 0.05483028720626632, 0.05221932114882506, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.06005221932114883, 0.05221932114882506, 0.05221932114882506, 0.05221932114882506, 0.04699738903394256, 0.04960835509138381, 0.06788511749347259, 0.04699738903394256, 0.04699738903394256, 0.04699738903394256, 0.04699738903394256, 0.04699738903394256, 0.044386422976501305, 0.044386422976501305, 0.044386422976501305, 0.044386422976501305, 0.044386422976501305, 0.044386422976501305, 0.044386422976501305, 0.044386422976501305, 0.044386422976501305, 0.044386422976501305, 0.044386422976501305, 0.05221932114882506, 0.04699738903394256, 0.044386422976501305, 0.0835509138381201, 0.06266318537859007, 0.06266318537859007, 0.06005221932114883, 0.05221932114882506, 0.04699738903394256, 0.04699738903394256, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.04960835509138381, 0.05221932114882506, 0.5483028720626631, 0.8537859007832899, 0.8668407310704961, 0.8407310704960835, 0.7127937336814621, 0.23759791122715404, 0.1174934725848564, 0.09138381201044386, 0.04699738903394256, 0.04177545691906005, 0.03655352480417755, 0.04177545691906005, 0.03655352480417755, 0.03655352480417755, 0.028720626631853787, 0.028720626631853787, 0.028720626631853787, 0.028720626631853787, 0.031331592689295036, 0.044386422976501305, 0.07571801566579635, 0.05483028720626632, 0.9268929503916449, 0.04177545691906005, 0.04177545691906005, 0.04699738903394256, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.03655352480417755, 0.03655352480417755, 0.03655352480417755, 0.03655352480417755, 0.033942558746736295, 0.8929503916449086, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.033942558746736295, 0.0391644908616188, 0.0391644908616188, 0.03655352480417755, 0.825065274151436, 0.06266318537859007, 0.04699738903394256, 0.0391644908616188, 0.04177545691906005, 0.04177545691906005, 0.04699738903394256, 0.044386422976501305, 0.04177545691906005, 0.04177545691906005, 0.044386422976501305, 0.04177545691906005, 0.04177545691906005, 0.04177545691906005, 0.04177545691906005, 0.044386422976501305, 0.044386422976501305, 0.04177545691906005, 0.04177545691906005, 0.044386422976501305, 0.04699738903394256, 0.04699738903394256, 0.04960835509138381, 0.05221932114882506, 0.05483028720626632, 0.05483028720626632, 0.06005221932114883, 0.0783289817232376, 0.09660574412532637, 0.1514360313315927, 0.26631853785900783, 0.43342036553524804], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4166.gap.json b/pfam_gap_rates/DUF4166.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf3c000dc592af04d4c5b8cf69ffb0a429167284
--- /dev/null
+++ b/pfam_gap_rates/DUF4166.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4166", "n_seqs": 151, "length": 191, "gap_rates": [0.152317880794702, 0.11258278145695365, 0.09933774834437085, 0.09271523178807947, 0.08609271523178808, 0.08609271523178808, 0.08609271523178808, 0.08609271523178808, 0.07947019867549669, 0.0728476821192053, 0.07947019867549669, 0.4370860927152318, 0.3973509933774834, 0.5629139072847682, 0.5231788079470199, 0.15894039735099338, 0.1456953642384106, 0.07947019867549669, 0.06622516556291391, 0.059602649006622516, 0.059602649006622516, 0.059602649006622516, 0.059602649006622516, 0.059602649006622516, 0.052980132450331126, 0.046357615894039736, 0.052980132450331126, 0.052980132450331126, 0.052980132450331126, 0.046357615894039736, 0.046357615894039736, 0.15894039735099338, 0.25165562913907286, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.039735099337748346, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.36423841059602646, 0.36423841059602646, 0.36423841059602646, 0.3576158940397351, 0.3509933774834437, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.039735099337748346, 0.033112582781456956, 0.039735099337748346, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.40397350993377484, 0.09271523178807947, 0.08609271523178808, 0.06622516556291391, 0.41721854304635764, 0.39072847682119205, 0.07947019867549669, 0.046357615894039736, 0.046357615894039736, 0.033112582781456956, 0.033112582781456956, 0.039735099337748346, 0.45695364238410596, 0.4503311258278146, 0.019867549668874173, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.019867549668874173, 0.019867549668874173, 0.7350993377483444, 0.36423841059602646, 0.33774834437086093, 0.33774834437086093, 0.31788079470198677, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.09933774834437085, 0.19205298013245034, 0.8675496688741722, 0.8741721854304636, 0.5099337748344371, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.033112582781456956, 0.039735099337748346, 0.36423841059602646, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.033112582781456956, 0.026490066225165563, 0.5165562913907285, 0.5165562913907285, 0.5562913907284768, 0.033112582781456956, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.31788079470198677, 0.31788079470198677, 0.31125827814569534, 0.31125827814569534, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.052980132450331126, 0.046357615894039736, 0.06622516556291391, 0.046357615894039736, 0.039735099337748346, 0.9403973509933775, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.026490066225165563, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.8609271523178808, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.23178807947019867, 0.026490066225165563, 0.039735099337748346, 0.5165562913907285, 0.059602649006622516, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.033112582781456956, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.11920529801324503], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4199.gap.json b/pfam_gap_rates/DUF4199.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa9098be71c2cfacb9e9015c8a800455a2488630
--- /dev/null
+++ b/pfam_gap_rates/DUF4199.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4199", "n_seqs": 252, "length": 185, "gap_rates": [0.6428571428571429, 0.20634920634920634, 0.08333333333333333, 0.07936507936507936, 0.07142857142857142, 0.05952380952380952, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.03968253968253968, 0.03571428571428571, 0.031746031746031744, 0.03571428571428571, 0.031746031746031744, 0.42857142857142855, 0.7142857142857143, 0.28174603174603174, 0.17063492063492064, 0.047619047619047616, 0.03968253968253968, 0.04365079365079365, 0.051587301587301584, 0.06349206349206349, 0.2222222222222222, 0.6865079365079365, 0.5992063492063492, 0.5515873015873016, 0.7896825396825397, 0.5277777777777778, 0.49206349206349204, 0.4246031746031746, 0.3611111111111111, 0.2261904761904762, 0.1626984126984127, 0.13095238095238096, 0.12301587301587301, 0.14285714285714285, 0.1349206349206349, 0.12698412698412698, 0.9484126984126984, 0.753968253968254, 0.08333333333333333, 0.07539682539682539, 0.06746031746031746, 0.023809523809523808, 0.031746031746031744, 0.06746031746031746, 0.4126984126984127, 0.3968253968253968, 0.38492063492063494, 0.2261904761904762, 0.007936507936507936, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.03571428571428571, 0.027777777777777776, 0.047619047619047616, 0.027777777777777776, 0.023809523809523808, 0.047619047619047616, 0.44047619047619047, 0.03968253968253968, 0.015873015873015872, 0.027777777777777776, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07142857142857142, 0.011904761904761904, 0.011904761904761904, 0.04365079365079365, 0.01984126984126984, 0.015873015873015872, 0.023809523809523808, 0.01984126984126984, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.03968253968253968, 0.05555555555555555, 0.05952380952380952, 0.08333333333333333, 0.09523809523809523, 0.10714285714285714, 0.0992063492063492, 0.1626984126984127, 0.19444444444444445, 0.27380952380952384, 0.2857142857142857, 0.38492063492063494, 0.39285714285714285, 0.49206349206349204, 0.5, 0.503968253968254, 0.5396825396825397, 0.7698412698412699, 0.4801587301587302, 0.4722222222222222, 0.38492063492063494, 0.3492063492063492, 0.30158730158730157, 0.1865079365079365, 0.1626984126984127, 0.1349206349206349, 0.1349206349206349, 0.1388888888888889, 0.15079365079365079, 0.9444444444444444, 0.2619047619047619, 0.25793650793650796, 0.2896825396825397, 0.26587301587301587, 0.2896825396825397, 0.8333333333333334, 0.8452380952380952, 0.7976190476190477, 0.2896825396825397, 0.373015873015873, 0.30952380952380953, 0.7380952380952381, 0.8373015873015873, 0.9444444444444444, 0.8849206349206349, 0.7817460317460317, 0.6666666666666666, 0.23412698412698413, 0.25, 0.15079365079365079, 0.14285714285714285, 0.7936507936507936, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11507936507936507, 0.11507936507936507, 0.11507936507936507, 0.11507936507936507, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.12301587301587301, 0.12698412698412698, 0.14682539682539683, 0.15476190476190477, 0.17857142857142858, 0.2222222222222222, 0.373015873015873], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF420.gap.json b/pfam_gap_rates/DUF420.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b5c09a19c91d91a63c317755cc4c6f34d5e0808
--- /dev/null
+++ b/pfam_gap_rates/DUF420.gap.json
@@ -0,0 +1 @@
+{"family": "DUF420", "n_seqs": 317, "length": 148, "gap_rates": [0.17665615141955837, 0.10725552050473186, 0.06309148264984227, 0.028391167192429023, 0.022082018927444796, 0.01892744479495268, 0.015772870662460567, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0031545741324921135, 0.9022082018927445, 0.0031545741324921135, 0.006309148264984227, 0.006309148264984227, 0.015772870662460567, 0.006309148264984227, 0.012618296529968454, 0.015772870662460567, 0.022082018927444796, 0.4952681388012618, 0.8801261829652997, 0.9085173501577287, 0.9148264984227129, 0.9211356466876972, 0.9369085173501577, 0.917981072555205, 0.9085173501577287, 0.9085173501577287, 0.3470031545741325, 0.015772870662460567, 0.006309148264984227, 0.0, 0.0, 0.0, 0.006309148264984227, 0.006309148264984227, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0031545741324921135, 0.0031545741324921135, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8485804416403786, 0.8485804416403786, 0.9211356466876972, 0.9463722397476341, 0.9463722397476341, 0.9463722397476341, 0.8548895899053628, 0.8485804416403786, 0.8454258675078864, 0.0, 0.0031545741324921135, 0.0031545741324921135, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.012618296529968454, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.01892744479495268, 0.01892744479495268, 0.022082018927444796, 0.0473186119873817, 0.06624605678233439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4210.gap.json b/pfam_gap_rates/DUF4210.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fc513619c8d64f8e24ec95ce335371c10ea8807
--- /dev/null
+++ b/pfam_gap_rates/DUF4210.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4210", "n_seqs": 203, "length": 78, "gap_rates": [0.07881773399014778, 0.07881773399014778, 0.04433497536945813, 0.03940886699507389, 0.03940886699507389, 0.034482758620689655, 0.019704433497536946, 0.019704433497536946, 0.014778325123152709, 0.014778325123152709, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.0049261083743842365, 0.0049261083743842365, 0.43349753694581283, 0.9359605911330049, 0.4236453201970443, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.3891625615763547, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0, 0.0, 0.4975369458128079, 0.49261083743842365, 0.4876847290640394, 0.49261083743842365, 0.4975369458128079, 0.49261083743842365, 0.45320197044334976, 0.024630541871921183, 0.029556650246305417, 0.08866995073891626, 0.12807881773399016, 0.15763546798029557, 0.15763546798029557, 0.15763546798029557, 0.15763546798029557, 0.14285714285714285, 0.14285714285714285, 0.15270935960591134, 0.16748768472906403, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.18226600985221675, 0.18226600985221675, 0.18719211822660098, 0.18719211822660098, 0.2019704433497537, 0.21182266009852216, 0.29064039408866993, 0.5911330049261084, 0.7142857142857143, 0.729064039408867, 0.7536945812807881, 0.9458128078817734, 0.7684729064039408, 0.7438423645320197, 0.7192118226600985, 0.7142857142857143, 0.2315270935960591, 0.21182266009852216, 0.22167487684729065, 0.3694581280788177], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4213.gap.json b/pfam_gap_rates/DUF4213.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdd4ea91c21de13fc4308fa0608613644c005afa
--- /dev/null
+++ b/pfam_gap_rates/DUF4213.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4213", "n_seqs": 172, "length": 106, "gap_rates": [0.5465116279069767, 0.4186046511627907, 0.31976744186046513, 0.23255813953488372, 0.19186046511627908, 0.12209302325581395, 0.11627906976744186, 0.09883720930232558, 0.5058139534883721, 0.9244186046511628, 0.05232558139534884, 0.040697674418604654, 0.03488372093023256, 0.023255813953488372, 0.023255813953488372, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.046511627906976744, 0.005813953488372093, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.21511627906976744, 0.37790697674418605, 0.9244186046511628, 0.9302325581395349, 0.9069767441860465, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.023255813953488372, 0.03488372093023256, 0.06395348837209303, 0.14534883720930233, 0.4011627906976744, 0.47674418604651164, 0.7151162790697675, 0.8430232558139535, 0.8604651162790697, 0.8662790697674418, 0.8546511627906976, 0.813953488372093, 0.622093023255814, 0.4476744186046512, 0.19186046511627908, 0.09883720930232558, 0.046511627906976744, 0.029069767441860465, 0.023255813953488372, 0.023255813953488372, 0.1511627906976744, 0.1511627906976744, 0.1569767441860465, 0.029069767441860465, 0.8662790697674418, 0.9069767441860465, 0.9418604651162791, 0.9418604651162791, 0.8662790697674418, 0.8546511627906976, 0.01744186046511628, 0.005813953488372093, 0.9476744186046512, 0.9476744186046512, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.8604651162790697, 0.029069767441860465, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.03488372093023256, 0.38953488372093026], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4267.gap.json b/pfam_gap_rates/DUF4267.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0bef664ef1d53c3dee8767ec87ff69d794cc009a
--- /dev/null
+++ b/pfam_gap_rates/DUF4267.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4276.gap.json b/pfam_gap_rates/DUF4276.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cda61425e2a30afa00e4586d4d8d98a649c5253b
--- /dev/null
+++ b/pfam_gap_rates/DUF4276.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4290.gap.json b/pfam_gap_rates/DUF4290.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c950c022abae0e7fc2f9594ae7a04a465a2a7282
--- /dev/null
+++ b/pfam_gap_rates/DUF4290.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4290", "n_seqs": 157, "length": 173, "gap_rates": [0.35668789808917195, 0.16560509554140126, 0.1592356687898089, 0.1464968152866242, 0.12738853503184713, 0.10191082802547771, 0.08917197452229299, 0.08280254777070063, 0.07006369426751592, 0.06369426751592357, 0.06369426751592357, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.025477707006369428, 0.01910828025477707, 0.025477707006369428, 0.025477707006369428, 0.05732484076433121, 0.06369426751592357, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.06369426751592357, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.006369426751592357, 0.01910828025477707, 0.006369426751592357, 0.006369426751592357, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.03184713375796178, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.03184713375796178, 0.06369426751592357, 0.10191082802547771, 0.29936305732484075, 0.7197452229299363], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4291.gap.json b/pfam_gap_rates/DUF4291.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c463d3195b48e7ccfd6ec0452058a6172d4d227c
--- /dev/null
+++ b/pfam_gap_rates/DUF4291.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4296.gap.json b/pfam_gap_rates/DUF4296.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3519b45c49b606456eba9f1e974ca4ebebaea3ba
--- /dev/null
+++ b/pfam_gap_rates/DUF4296.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4296", "n_seqs": 149, "length": 90, "gap_rates": [0.2550335570469799, 0.22818791946308725, 0.16778523489932887, 0.14093959731543623, 0.06040268456375839, 0.04697986577181208, 0.040268456375838924, 0.03355704697986577, 0.03355704697986577, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.053691275167785234, 0.04697986577181208, 0.006711409395973154, 0.013422818791946308, 0.020134228187919462, 0.040268456375838924, 0.38926174496644295, 0.3288590604026846, 0.42953020134228187, 0.9261744966442953, 0.9194630872483222, 0.21476510067114093, 0.1610738255033557, 0.26174496644295303, 0.3288590604026846, 0.8456375838926175, 0.7651006711409396, 0.12751677852348994, 0.06711409395973154, 0.04697986577181208, 0.040268456375838924, 0.013422818791946308, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006711409395973154, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.013422818791946308, 0.013422818791946308, 0.020134228187919462, 0.09395973154362416, 0.1342281879194631, 0.3221476510067114, 0.6375838926174496], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4325.gap.json b/pfam_gap_rates/DUF4325.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f59256361a630ada9b02ad5627cdf0c9203a2518
--- /dev/null
+++ b/pfam_gap_rates/DUF4325.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4331.gap.json b/pfam_gap_rates/DUF4331.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ddbe49f41d455610ac8b155a6b9c9523f057a0d
--- /dev/null
+++ b/pfam_gap_rates/DUF4331.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4340.gap.json b/pfam_gap_rates/DUF4340.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ebd4337df4c382cfab0eb72e2f5c42a475ff740
--- /dev/null
+++ b/pfam_gap_rates/DUF4340.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4352.gap.json b/pfam_gap_rates/DUF4352.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e721d2c66be616a0f5cc8556c44f7676c5aa7d5
--- /dev/null
+++ b/pfam_gap_rates/DUF4352.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4407.gap.json b/pfam_gap_rates/DUF4407.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89e2a359775fc9a9c06a98b58ebc112425856747
--- /dev/null
+++ b/pfam_gap_rates/DUF4407.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4409.gap.json b/pfam_gap_rates/DUF4409.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85bd9c95324882e3422b6361b56efc5eb3ec39b8
--- /dev/null
+++ b/pfam_gap_rates/DUF4409.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4432.gap.json b/pfam_gap_rates/DUF4432.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e99bf4bdd022032ad54304a7ea30bdc8ce49e1ad
--- /dev/null
+++ b/pfam_gap_rates/DUF4432.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4477.gap.json b/pfam_gap_rates/DUF4477.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..039707a522aa03b493b1e7c80453c8889b984b59
--- /dev/null
+++ b/pfam_gap_rates/DUF4477.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4477", "n_seqs": 123, "length": 207, "gap_rates": [0.7398373983739838, 0.7398373983739838, 0.7398373983739838, 0.7398373983739838, 0.7235772357723578, 0.6991869918699187, 0.6910569105691057, 0.6910569105691057, 0.6829268292682927, 0.6747967479674797, 0.6747967479674797, 0.6747967479674797, 0.6747967479674797, 0.6747967479674797, 0.7804878048780488, 0.7398373983739838, 0.7317073170731707, 0.9349593495934959, 0.7398373983739838, 0.7235772357723578, 0.6016260162601627, 0.6016260162601627, 0.5772357723577236, 0.5609756097560976, 0.5365853658536586, 0.5365853658536586, 0.5365853658536586, 0.5203252032520326, 0.5121951219512195, 0.5203252032520326, 0.5284552845528455, 0.5284552845528455, 0.44715447154471544, 0.3983739837398374, 0.34959349593495936, 0.34146341463414637, 0.3252032520325203, 0.3089430894308943, 0.3008130081300813, 0.3008130081300813, 0.2926829268292683, 0.2682926829268293, 0.2601626016260163, 0.2682926829268293, 0.2682926829268293, 0.24390243902439024, 0.8780487804878049, 0.9186991869918699, 0.6422764227642277, 0.3821138211382114, 0.15447154471544716, 0.12195121951219512, 0.07317073170731707, 0.056910569105691054, 0.056910569105691054, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.943089430894309, 0.943089430894309, 0.9349593495934959, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.032520325203252036, 0.056910569105691054, 0.07317073170731707, 0.3089430894308943, 0.7560975609756098, 0.8699186991869918, 0.943089430894309, 0.8780487804878049, 0.7723577235772358, 0.6747967479674797, 0.3821138211382114, 0.3170731707317073, 0.45528455284552843, 0.3983739837398374, 0.2764227642276423, 0.1951219512195122, 0.2601626016260163, 0.13008130081300814, 0.08130081300813008, 0.07317073170731707, 0.07317073170731707, 0.06504065040650407, 0.07317073170731707, 0.06504065040650407, 0.07317073170731707, 0.08130081300813008, 0.13008130081300814, 0.13821138211382114, 0.13008130081300814, 0.926829268292683, 0.9349593495934959, 0.926829268292683, 0.9186991869918699, 0.11382113821138211, 0.10569105691056911, 0.10569105691056911, 0.11382113821138211, 0.12195121951219512, 0.12195121951219512, 0.11382113821138211, 0.10569105691056911, 0.10569105691056911, 0.10569105691056911, 0.10569105691056911, 0.10569105691056911, 0.0975609756097561, 0.0975609756097561, 0.08943089430894309, 0.08943089430894309, 0.08943089430894309, 0.08943089430894309, 0.08943089430894309, 0.08943089430894309, 0.0975609756097561, 0.10569105691056911, 0.0975609756097561, 0.0975609756097561, 0.10569105691056911, 0.0975609756097561, 0.10569105691056911, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13821138211382114, 0.13821138211382114, 0.13821138211382114, 0.13821138211382114, 0.13821138211382114, 0.13821138211382114, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.15447154471544716, 0.16260162601626016, 0.17073170731707318, 0.17886178861788618, 0.17886178861788618, 0.17886178861788618, 0.21951219512195122, 0.22764227642276422, 0.24390243902439024, 0.2682926829268293, 0.2926829268292683, 0.3170731707317073, 0.35772357723577236, 0.36585365853658536, 0.37398373983739835, 0.4715447154471545, 0.6016260162601627, 0.8211382113821138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4535.gap.json b/pfam_gap_rates/DUF4535.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..366f90ab91dfbf9ef9fd5421cf13d5b6d5e3dff0
--- /dev/null
+++ b/pfam_gap_rates/DUF4535.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4535", "n_seqs": 112, "length": 50, "gap_rates": [0.5, 0.125, 0.05357142857142857, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008928571428571428, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.9464285714285714, 0.9464285714285714, 0.16964285714285715, 0.11607142857142858, 0.125, 0.125, 0.03571428571428571, 0.044642857142857144, 0.044642857142857144, 0.05357142857142857, 0.0625, 0.07142857142857142, 0.07142857142857142, 0.0625, 0.10714285714285714, 0.16071428571428573, 0.16071428571428573, 0.17857142857142858, 0.1875, 0.1875, 0.1875, 0.22321428571428573, 0.33035714285714285], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF456.gap.json b/pfam_gap_rates/DUF456.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eab346427e8e23d9bd0a2853fb0cfaaa718e0dbd
--- /dev/null
+++ b/pfam_gap_rates/DUF456.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4704.gap.json b/pfam_gap_rates/DUF4704.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f89b53f46b8972b7ddab472ad90f25987b553637
--- /dev/null
+++ b/pfam_gap_rates/DUF4704.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4832.gap.json b/pfam_gap_rates/DUF4832.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2b4467c543f2b6f1c73c5f49e7cf68cf6f39f98
--- /dev/null
+++ b/pfam_gap_rates/DUF4832.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF4916.gap.json b/pfam_gap_rates/DUF4916.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3daa41ff3104582fd92b100da02d3c26d4d3f730
--- /dev/null
+++ b/pfam_gap_rates/DUF4916.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4921.gap.json b/pfam_gap_rates/DUF4921.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f299742d67f33fc0b64bd50c60fee98f11b71b01
--- /dev/null
+++ b/pfam_gap_rates/DUF4921.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF498.gap.json b/pfam_gap_rates/DUF498.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1d3326d364b573456c75cfc59cd5fc86484305c
--- /dev/null
+++ b/pfam_gap_rates/DUF498.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF499.gap.json b/pfam_gap_rates/DUF499.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8d5f5a922942802f1a8d515153d906f798ac818
--- /dev/null
+++ b/pfam_gap_rates/DUF499.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF520.gap.json b/pfam_gap_rates/DUF520.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ffa233de888cf569e9ca61240e02045f5e9ed0a1
--- /dev/null
+++ b/pfam_gap_rates/DUF520.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF521.gap.json b/pfam_gap_rates/DUF521.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..716e9cb06cf0a60ed0605061b38c95fd57f530e7
--- /dev/null
+++ b/pfam_gap_rates/DUF521.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF563.gap.json b/pfam_gap_rates/DUF563.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc08bf60c4ca7857da54cc6b258c24e8b1ed90f8
--- /dev/null
+++ b/pfam_gap_rates/DUF563.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF58.gap.json b/pfam_gap_rates/DUF58.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2fedd41e364bf4858b3b28a017e4d59d7890d635
--- /dev/null
+++ b/pfam_gap_rates/DUF58.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF591.gap.json b/pfam_gap_rates/DUF591.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..069f564ff4ab43d2c8ac10652cab92fa05aeb3c5
--- /dev/null
+++ b/pfam_gap_rates/DUF591.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF599.gap.json b/pfam_gap_rates/DUF599.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae7d19a28e77b4dd97d33970e52be35d425d319b
--- /dev/null
+++ b/pfam_gap_rates/DUF599.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF608.gap.json b/pfam_gap_rates/DUF608.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b18d1f3b198134c7bab3f5fe6de41f0e0ae977d4
--- /dev/null
+++ b/pfam_gap_rates/DUF608.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF620.gap.json b/pfam_gap_rates/DUF620.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bfcacf9d6fe96dab0a856c2044707b2ba65fa9bd
--- /dev/null
+++ b/pfam_gap_rates/DUF620.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF664.gap.json b/pfam_gap_rates/DUF664.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e29bf00805c453cb520d441c9651db794eaba2f
--- /dev/null
+++ b/pfam_gap_rates/DUF664.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF677.gap.json b/pfam_gap_rates/DUF677.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd33a95e99552844e37d6d3aa38b185c7984eb5d
--- /dev/null
+++ b/pfam_gap_rates/DUF677.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF688.gap.json b/pfam_gap_rates/DUF688.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83558ac323e3decedb8e6f0f2b25a8c654c1e34f
--- /dev/null
+++ b/pfam_gap_rates/DUF688.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF695.gap.json b/pfam_gap_rates/DUF695.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8a46d2993cf91371f8dc05c9f64676720e5c601
--- /dev/null
+++ b/pfam_gap_rates/DUF695.gap.json
@@ -0,0 +1 @@
+{"family": "DUF695", "n_seqs": 112, "length": 137, "gap_rates": [0.7142857142857143, 0.48214285714285715, 0.375, 0.375, 0.36607142857142855, 0.3482142857142857, 0.3125, 0.29464285714285715, 0.29464285714285715, 0.2767857142857143, 0.24107142857142858, 0.19642857142857142, 0.8125, 0.1875, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.17857142857142858, 0.15178571428571427, 0.17857142857142858, 0.13392857142857142, 0.11607142857142858, 0.08035714285714286, 0.044642857142857144, 0.044642857142857144, 0.03571428571428571, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.03571428571428571, 0.026785714285714284, 0.35714285714285715, 0.14285714285714285, 0.11607142857142858, 0.08928571428571429, 0.07142857142857142, 0.07142857142857142, 0.044642857142857144, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.0, 0.0, 0.0, 0.03571428571428571, 0.008928571428571428, 0.008928571428571428, 0.3125, 0.9375, 0.1875, 0.008928571428571428, 0.008928571428571428, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008928571428571428, 0.0, 0.008928571428571428, 0.05357142857142857, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.03571428571428571, 0.8482142857142857, 0.08928571428571429, 0.05357142857142857, 0.044642857142857144, 0.026785714285714284, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.017857142857142856, 0.017857142857142856, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.03571428571428571, 0.17857142857142858, 0.25892857142857145, 0.2857142857142857, 0.35714285714285715, 0.5089285714285714, 0.6339285714285714, 0.7767857142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF719.gap.json b/pfam_gap_rates/DUF719.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de49dc2272b0b46a2d68e3f0d1865656976d9f25
--- /dev/null
+++ b/pfam_gap_rates/DUF719.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF72.gap.json b/pfam_gap_rates/DUF72.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14729128143b24e527793a40699c7c90c70b94cc
--- /dev/null
+++ b/pfam_gap_rates/DUF72.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF721.gap.json b/pfam_gap_rates/DUF721.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb609f53f6b48337b236a55cb0f2b93512dfafe1
--- /dev/null
+++ b/pfam_gap_rates/DUF721.gap.json
@@ -0,0 +1 @@
+{"family": "DUF721", "n_seqs": 1163, "length": 100, "gap_rates": [0.8048151332760103, 0.44368013757523644, 0.37317282889079967, 0.3250214961306965, 0.29578675838349094, 0.2725709372312984, 0.2588134135855546, 0.2510748065348237, 0.24763542562338778, 0.2656921754084265, 0.2699914015477214, 0.24247635425623387, 0.9355116079105761, 0.19002579535683578, 0.14875322441960448, 0.13671539122957868, 0.12381771281169389, 0.7953568357695615, 0.10490111779879621, 0.0885640584694755, 0.0825451418744626, 0.07824591573516768, 0.07222699914015478, 0.061049011177987965, 0.05331040412725709, 0.046431642304385214, 0.0412725709372313, 0.03869303525365434, 0.037833190025795355, 0.034393809114359415, 0.030954428202923472, 0.029234737747205503, 0.028374892519346516, 0.026655202063628546, 0.028374892519346516, 0.02235597592433362, 0.04815133276010318, 0.03009458297506449, 0.02063628546861565, 0.014617368873602751, 0.010318142734307825, 0.008598452278589854, 0.006878761822871883, 0.0060189165950128975, 0.005159071367153913, 0.005159071367153913, 0.005159071367153913, 0.005159071367153913, 0.8048151332760103, 0.8323301805674979, 0.8503869303525365, 0.938091143594153, 0.9484092863284609, 0.944969905417025, 0.8942390369733448, 0.8435081685296647, 0.8297506448839209, 0.7953568357695615, 0.005159071367153913, 0.0060189165950128975, 0.004299226139294927, 0.0025795356835769563, 0.0025795356835769563, 0.0025795356835769563, 0.1117798796216681, 0.0025795356835769563, 0.0034393809114359416, 0.0060189165950128975, 0.009458297506448839, 0.0025795356835769563, 0.034393809114359415, 0.0025795356835769563, 0.0025795356835769563, 0.0034393809114359416, 0.0034393809114359416, 0.0034393809114359416, 0.0034393809114359416, 0.004299226139294927, 0.0060189165950128975, 0.0060189165950128975, 0.006878761822871883, 0.006878761822871883, 0.007738607050730868, 0.008598452278589854, 0.009458297506448839, 0.012037833190025795, 0.014617368873602751, 0.01633705932932072, 0.026655202063628546, 0.040412725709372314, 0.13413585554600171, 0.23817712811693895, 0.10060189165950129, 0.0997420464316423, 0.10318142734307825, 0.11693895098882201, 0.1289767841788478, 0.13757523645743766, 0.1994840928632846, 0.37747205503009457], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF726.gap.json b/pfam_gap_rates/DUF726.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..976610f84db2a2cdbe4960d718580d0c3acabe33
--- /dev/null
+++ b/pfam_gap_rates/DUF726.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF779.gap.json b/pfam_gap_rates/DUF779.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3700410e61b6510ea2883c463b838909cae66093
--- /dev/null
+++ b/pfam_gap_rates/DUF779.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF815.gap.json b/pfam_gap_rates/DUF815.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b77d370ee931eb3af69f1e2f19ddd2449ed0ee0
--- /dev/null
+++ b/pfam_gap_rates/DUF815.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF836.gap.json b/pfam_gap_rates/DUF836.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..142960632a8b13769122ed2721ca12f1eec9c0e4
--- /dev/null
+++ b/pfam_gap_rates/DUF836.gap.json
@@ -0,0 +1 @@
+{"family": "DUF836", "n_seqs": 712, "length": 101, "gap_rates": [0.6530898876404494, 0.16573033707865167, 0.09269662921348315, 0.06741573033707865, 0.06320224719101124, 0.05758426966292135, 0.054775280898876406, 0.05337078651685393, 0.05196629213483146, 0.05196629213483146, 0.05196629213483146, 0.04073033707865169, 0.04073033707865169, 0.04073033707865169, 0.04073033707865169, 0.037921348314606744, 0.033707865168539325, 0.02949438202247191, 0.028089887640449437, 0.026685393258426966, 0.025280898876404494, 0.09550561797752809, 0.9396067415730337, 0.0800561797752809, 0.0898876404494382, 0.12078651685393259, 0.06882022471910113, 0.056179775280898875, 0.0449438202247191, 0.8595505617977528, 0.8946629213483146, 0.9367977528089888, 0.9073033707865169, 0.8764044943820225, 0.8497191011235955, 0.05898876404494382, 0.03651685393258427, 0.011235955056179775, 0.004213483146067416, 0.0028089887640449437, 0.0014044943820224719, 0.0028089887640449437, 0.0028089887640449437, 0.0014044943820224719, 0.8216292134831461, 0.9466292134831461, 0.9438202247191011, 0.8103932584269663, 0.0014044943820224719, 0.021067415730337078, 0.016853932584269662, 0.014044943820224719, 0.9073033707865169, 0.8946629213483146, 0.021067415730337078, 0.018258426966292134, 0.009831460674157303, 0.009831460674157303, 0.009831460674157303, 0.011235955056179775, 0.014044943820224719, 0.014044943820224719, 0.016853932584269662, 0.018258426966292134, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.02247191011235955, 0.028089887640449437, 0.723314606741573, 0.7528089887640449, 0.7429775280898876, 0.7415730337078652, 0.7429775280898876, 0.7443820224719101, 0.9213483146067416, 0.9325842696629213, 0.9410112359550562, 0.9339887640449438, 0.9241573033707865, 0.9073033707865169, 0.6966292134831461, 0.15870786516853932, 0.12780898876404495, 0.13764044943820225, 0.1404494382022472, 0.14887640449438203, 0.14887640449438203, 0.15168539325842698, 0.15308988764044945, 0.16432584269662923, 0.17415730337078653, 0.18258426966292135, 0.1853932584269663, 0.1896067415730337, 0.21067415730337077, 0.2345505617977528, 0.29353932584269665, 0.3693820224719101, 0.8525280898876404], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF87.gap.json b/pfam_gap_rates/DUF87.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9b7fd1e573f30168691a2f5388ec896163e8ae1
--- /dev/null
+++ b/pfam_gap_rates/DUF87.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF871.gap.json b/pfam_gap_rates/DUF871.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09d83db3c7c566f153fdacd16cccfaad0dde090b
--- /dev/null
+++ b/pfam_gap_rates/DUF871.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF885.gap.json b/pfam_gap_rates/DUF885.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3168aa86981376cea74d0f6105a40680fcaf8cc1
--- /dev/null
+++ b/pfam_gap_rates/DUF885.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF935.gap.json b/pfam_gap_rates/DUF935.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df97253a9173248901462590d0e1ebf5eca01ebe
--- /dev/null
+++ b/pfam_gap_rates/DUF935.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF972.gap.json b/pfam_gap_rates/DUF972.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbda3809afa794065bca7041aafcd703bb6e5631
--- /dev/null
+++ b/pfam_gap_rates/DUF972.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dak1_2.gap.json b/pfam_gap_rates/Dak1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d225ee94261a299b436f4a321f86c2bdc8bbcb6
--- /dev/null
+++ b/pfam_gap_rates/Dak1_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dala_Dala_lig_N.gap.json b/pfam_gap_rates/Dala_Dala_lig_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..226cef150f866ec5430022d91b9ddf5e2df50245
--- /dev/null
+++ b/pfam_gap_rates/Dala_Dala_lig_N.gap.json
@@ -0,0 +1 @@
+{"family": "Dala_Dala_lig_N", "n_seqs": 2216, "length": 137, "gap_rates": [0.28835740072202165, 0.06723826714801444, 0.047382671480144405, 0.04648014440433213, 0.04196750902527076, 0.024819494584837544, 0.024368231046931407, 0.024368231046931407, 0.024368231046931407, 0.023465703971119134, 0.023465703971119134, 0.023014440433212997, 0.023014440433212997, 0.023014440433212997, 0.023014440433212997, 0.02075812274368231, 0.02075812274368231, 0.0194043321299639, 0.018501805054151624, 0.018501805054151624, 0.018501805054151624, 0.018050541516245487, 0.01759927797833935, 0.015342960288808664, 0.013537906137184115, 0.013086642599277979, 0.01263537906137184, 0.046028880866425995, 0.027527075812274367, 0.021660649819494584, 0.014891696750902527, 0.015342960288808664, 0.013086642599277979, 0.013086642599277979, 0.011732851985559567, 0.013989169675090252, 0.013537906137184115, 0.011732851985559567, 0.9458483754512635, 0.9499097472924187, 0.944043321299639, 0.014891696750902527, 0.04828519855595668, 0.04828519855595668, 0.161101083032491, 0.08844765342960288, 0.06407942238267147, 0.07716606498194946, 0.12906137184115524, 0.13312274368231047, 0.009025270758122744, 0.039711191335740074, 0.14756317689530685, 0.2973826714801444, 0.33754512635379064, 0.3434115523465704, 0.3456678700361011, 0.37093862815884476, 0.3731949458483754, 0.375, 0.3777075812274368, 0.384927797833935, 0.40342960288808666, 0.44133574007220217, 0.45126353790613716, 0.46344765342960287, 0.490072202166065, 0.5189530685920578, 0.5509927797833934, 0.5816787003610109, 0.6164259927797834, 0.6827617328519856, 0.717057761732852, 0.7775270758122743, 0.8330324909747292, 0.894404332129964, 0.9264440433212996, 0.947202166064982, 0.9327617328519856, 0.9156137184115524, 0.8614620938628159, 0.8181407942238267, 0.7396209386281588, 0.7035198555956679, 0.6565884476534296, 0.6015342960288809, 0.5636281588447654, 0.5370036101083032, 0.5054151624548736, 0.4697653429602888, 0.4602888086642599, 0.447202166064982, 0.4395306859205776, 0.3894404332129964, 0.3786101083032491, 0.3759025270758123, 0.37364620938628157, 0.37274368231046934, 0.36958483754512633, 0.3443140794223827, 0.3407039711191336, 0.3312274368231047, 0.18546931407942238, 0.04422382671480144, 0.036101083032490974, 0.0058664259927797835, 0.005415162454873646, 0.005415162454873646, 0.005415162454873646, 0.005415162454873646, 0.005415162454873646, 0.0058664259927797835, 0.005415162454873646, 0.005415162454873646, 0.005415162454873646, 0.005415162454873646, 0.005415162454873646, 0.00631768953068592, 0.007220216606498195, 0.006768953068592058, 0.007671480144404332, 0.006768953068592058, 0.006768953068592058, 0.007220216606498195, 0.007220216606498195, 0.008122743682310469, 0.008122743682310469, 0.008122743682310469, 0.008574007220216607, 0.008574007220216607, 0.008574007220216607, 0.008574007220216607, 0.00947653429602888, 0.012184115523465704, 0.013989169675090252, 0.10424187725631769, 0.30866425992779783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dehydrin.gap.json b/pfam_gap_rates/Dehydrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1970d4ad98f5c3b893bda92c9340490839cffe24
--- /dev/null
+++ b/pfam_gap_rates/Dehydrin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DeoRC.gap.json b/pfam_gap_rates/DeoRC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3ef8eddc79695c553792c91fe76bfbb66b765a3
--- /dev/null
+++ b/pfam_gap_rates/DeoRC.gap.json
@@ -0,0 +1 @@
+{"family": "DeoRC", "n_seqs": 3047, "length": 164, "gap_rates": [0.5054151624548736, 0.24023629799803084, 0.10502133245815556, 0.058746307843780765, 0.041352149655398754, 0.032490974729241874, 0.027568099770265836, 0.02527075812274368, 0.02527075812274368, 0.02461437479488021, 0.02395799146701674, 0.023301608139153267, 0.023301608139153267, 0.022645224811289794, 0.02133245815556285, 0.02133245815556285, 0.02100426649163111, 0.020676074827699377, 0.020676074827699377, 0.019691499835904167, 0.019691499835904167, 0.019691499835904167, 0.019035116508040694, 0.019035116508040694, 0.01870692484410896, 0.018050541516245487, 0.017722349852313753, 0.017722349852313753, 0.017722349852313753, 0.017722349852313753, 0.017394158188382015, 0.01706596652445028, 0.016409583196586808, 0.016409583196586808, 0.016409583196586808, 0.016409583196586808, 0.015753199868723335, 0.015753199868723335, 0.015425008204791599, 0.01608139153265507, 0.27568099770265836, 0.9251723006235641, 0.9435510338037414, 0.8365605513619954, 0.03413193304890056, 0.01608139153265507, 0.015425008204791599, 0.015425008204791599, 0.013784049885132918, 0.013784049885132918, 0.013455858221201182, 0.013455858221201182, 0.013455858221201182, 0.014112241549064654, 0.015096816540859863, 0.013455858221201182, 0.014112241549064654, 0.015096816540859863, 0.015753199868723335, 0.01279947489333771, 0.012471283229405973, 0.016409583196586808, 0.1824745651460453, 0.9468329504430587, 0.9084345257630456, 0.016737774860518542, 0.012471283229405973, 0.012471283229405973, 0.011486708237610764, 0.0118148999015425, 0.0118148999015425, 0.012143091565474237, 0.012143091565474237, 0.012143091565474237, 0.04200853298326222, 0.021660649819494584, 0.013455858221201182, 0.013784049885132918, 0.02297341647522153, 0.014768624876928127, 0.01444043321299639, 0.013784049885132918, 0.013455858221201182, 0.013455858221201182, 0.013455858221201182, 0.017722349852313753, 0.018050541516245487, 0.015096816540859863, 0.013784049885132918, 0.01444043321299639, 0.015096816540859863, 0.014768624876928127, 0.013127666557269446, 0.013127666557269446, 0.01279947489333771, 0.012471283229405973, 0.013127666557269446, 0.01279947489333771, 0.01279947489333771, 0.012143091565474237, 0.0118148999015425, 0.011158516573679028, 0.011486708237610764, 0.0118148999015425, 0.012143091565474237, 0.0118148999015425, 0.012471283229405973, 0.0118148999015425, 0.012143091565474237, 0.12569740728585493, 0.05579258286839514, 0.012471283229405973, 0.013127666557269446, 0.013784049885132918, 0.014112241549064654, 0.014112241549064654, 0.01444043321299639, 0.014768624876928127, 0.037742041352149654, 0.015753199868723335, 0.015096816540859863, 0.01444043321299639, 0.01444043321299639, 0.014112241549064654, 0.01444043321299639, 0.014768624876928127, 0.01444043321299639, 0.01444043321299639, 0.015753199868723335, 0.015425008204791599, 0.015425008204791599, 0.015425008204791599, 0.01608139153265507, 0.01608139153265507, 0.016409583196586808, 0.01608139153265507, 0.01608139153265507, 0.016737774860518542, 0.017394158188382015, 0.018050541516245487, 0.018050541516245487, 0.018050541516245487, 0.018050541516245487, 0.01870692484410896, 0.019363308171972432, 0.020019691499835904, 0.02100426649163111, 0.02133245815556285, 0.021988841483426322, 0.022317033147358056, 0.022317033147358056, 0.02625533311453889, 0.023301608139153267, 0.024286183130948474, 0.02395799146701674, 0.02527075812274368, 0.028552674762061043, 0.029537249753856253, 0.08664259927797834, 0.035116508040695764, 0.04693140794223827, 0.06366918280275681, 0.13160485723662618, 0.5411880538234329], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Desulfoferrodox.gap.json b/pfam_gap_rates/Desulfoferrodox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..213c8d8f9c9616a3640671bc006059c358f2ef4e
--- /dev/null
+++ b/pfam_gap_rates/Desulfoferrodox.gap.json
@@ -0,0 +1 @@
+{"family": "Desulfoferrodox", "n_seqs": 518, "length": 116, "gap_rates": [0.444015444015444, 0.21428571428571427, 0.15057915057915058, 0.11003861003861004, 0.06756756756756757, 0.0637065637065637, 0.06177606177606178, 0.059845559845559844, 0.059845559845559844, 0.059845559845559844, 0.05791505791505792, 0.05791505791505792, 0.05405405405405406, 0.38996138996138996, 0.44015444015444016, 0.5444015444015444, 0.48455598455598453, 0.5135135135135135, 0.3687258687258687, 0.3166023166023166, 0.2953667953667954, 0.6602316602316602, 0.6196911196911197, 0.42857142857142855, 0.2876447876447876, 0.05405405405405406, 0.03667953667953668, 0.03088803088803089, 0.032818532818532815, 0.02895752895752896, 0.03474903474903475, 0.0637065637065637, 0.7664092664092664, 0.03667953667953668, 0.005791505791505791, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019305019305019305, 0.0, 0.0, 0.0019305019305019305, 0.4980694980694981, 0.013513513513513514, 0.02702702702702703, 0.007722007722007722, 0.011583011583011582, 0.019305019305019305, 0.8204633204633205, 0.8243243243243243, 0.8474903474903475, 0.8281853281853282, 0.8223938223938224, 0.7857142857142857, 0.007722007722007722, 0.023166023166023165, 0.005791505791505791, 0.0019305019305019305, 0.003861003861003861, 0.003861003861003861, 0.0019305019305019305, 0.005791505791505791, 0.8204633204633205, 0.832046332046332, 0.8397683397683398, 0.9073359073359073, 0.9131274131274131, 0.9131274131274131, 0.915057915057915, 0.9131274131274131, 0.9131274131274131, 0.9073359073359073, 0.8378378378378378, 0.832046332046332, 0.7760617760617761, 0.003861003861003861, 0.944015444015444, 0.0019305019305019305, 0.0019305019305019305, 0.003861003861003861, 0.003861003861003861, 0.0019305019305019305, 0.003861003861003861, 0.003861003861003861, 0.003861003861003861, 0.007722007722007722, 0.02702702702702703, 0.06177606177606178, 0.6756756756756757, 0.9324324324324325, 0.41505791505791506, 0.24903474903474904, 0.04826254826254826, 0.007722007722007722, 0.009652509652509652, 0.013513513513513514, 0.011583011583011582, 0.003861003861003861, 0.003861003861003861, 0.003861003861003861, 0.005791505791505791, 0.005791505791505791, 0.005791505791505791, 0.013513513513513514, 0.017374517374517374, 0.03088803088803089, 0.2857142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dfp1_Him1_M.gap.json b/pfam_gap_rates/Dfp1_Him1_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6eeb27408c70b42c600896e9529f449a5022ee1f
--- /dev/null
+++ b/pfam_gap_rates/Dfp1_Him1_M.gap.json
@@ -0,0 +1 @@
+{"family": "Dfp1_Him1_M", "n_seqs": 131, "length": 148, "gap_rates": [0.2595419847328244, 0.1450381679389313, 0.08396946564885496, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.05343511450381679, 0.061068702290076333, 0.07633587786259542, 0.0916030534351145, 0.11450381679389313, 0.12213740458015267, 0.16030534351145037, 0.1984732824427481, 0.32061068702290074, 0.37404580152671757, 0.40458015267175573, 0.3969465648854962, 0.3969465648854962, 0.5114503816793893, 0.6106870229007634, 0.7251908396946565, 0.8549618320610687, 0.9083969465648855, 0.9389312977099237, 0.8931297709923665, 0.7938931297709924, 0.648854961832061, 0.5419847328244275, 0.48854961832061067, 0.29770992366412213, 0.24427480916030533, 0.05343511450381679, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.05343511450381679, 0.04580152671755725, 0.07633587786259542, 0.06870229007633588, 0.8931297709923665, 0.061068702290076333, 0.061068702290076333, 0.03816793893129771, 0.04580152671755725, 0.03816793893129771, 0.030534351145038167, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.022900763358778626, 0.022900763358778626, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.7175572519083969, 0.7175572519083969, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.0, 0.0, 0.0, 0.0, 0.16030534351145037, 0.1450381679389313, 0.9007633587786259, 0.16793893129770993, 0.15267175572519084, 0.9312977099236641, 0.9236641221374046, 0.13740458015267176, 0.12213740458015267, 0.06870229007633588, 0.5343511450381679, 0.022900763358778626, 0.015267175572519083, 0.0, 0.9007633587786259, 0.916030534351145, 0.9083969465648855, 0.8854961832061069, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007633587786259542, 0.022900763358778626, 0.022900763358778626, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.08396946564885496, 0.6030534351145038], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Diphthami_syn_2.gap.json b/pfam_gap_rates/Diphthami_syn_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a1cdb0ad953637d5e801ee957f9eebac9789f8d
--- /dev/null
+++ b/pfam_gap_rates/Diphthami_syn_2.gap.json
@@ -0,0 +1 @@
+{"family": "Diphthami_syn_2", "n_seqs": 676, "length": 273, "gap_rates": [0.6079881656804734, 0.4393491124260355, 0.3668639053254438, 0.3076923076923077, 0.2692307692307692, 0.24260355029585798, 0.20710059171597633, 0.20266272189349113, 0.20118343195266272, 0.20118343195266272, 0.1997041420118343, 0.19822485207100593, 0.19822485207100593, 0.19822485207100593, 0.1997041420118343, 0.1997041420118343, 0.20266272189349113, 0.20118343195266272, 0.20266272189349113, 0.19822485207100593, 0.19822485207100593, 0.19822485207100593, 0.19674556213017752, 0.8431952662721893, 0.3165680473372781, 0.19674556213017752, 0.1952662721893491, 0.19674556213017752, 0.19674556213017752, 0.1952662721893491, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.1908284023668639, 0.1849112426035503, 0.1863905325443787, 0.8698224852071006, 0.8831360946745562, 0.9112426035502958, 0.871301775147929, 0.8550295857988166, 0.17455621301775148, 0.17159763313609466, 0.17159763313609466, 0.8979289940828402, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Dirigent.gap.json b/pfam_gap_rates/Dirigent.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9278590bd1829f1d25985936019c9aa9418355d8
--- /dev/null
+++ b/pfam_gap_rates/Dirigent.gap.json
@@ -0,0 +1 @@
+{"family": "Dirigent", "n_seqs": 970, "length": 162, "gap_rates": [0.8762886597938144, 0.477319587628866, 0.3443298969072165, 0.2845360824742268, 0.25463917525773194, 0.23917525773195877, 0.23711340206185566, 0.23608247422680412, 0.2288659793814433, 0.22164948453608246, 0.22061855670103092, 0.2175257731958763, 0.9010309278350516, 0.2536082474226804, 0.23917525773195877, 0.2309278350515464, 0.8989690721649485, 0.9072164948453608, 0.8783505154639175, 0.177319587628866, 0.17628865979381445, 0.17422680412371133, 0.18350515463917524, 0.17525773195876287, 0.1731958762886598, 0.16494845360824742, 0.16082474226804125, 0.15979381443298968, 0.16494845360824742, 0.20309278350515464, 0.49072164948453606, 0.4515463917525773, 0.8886597938144329, 0.9237113402061856, 0.8350515463917526, 0.4690721649484536, 0.5474226804123712, 0.4587628865979381, 0.27319587628865977, 0.1463917525773196, 0.10927835051546392, 0.09381443298969072, 0.09072164948453608, 0.08762886597938144, 0.08247422680412371, 0.07835051546391752, 0.07216494845360824, 0.06701030927835051, 0.060824742268041236, 0.0577319587628866, 0.05670103092783505, 0.0577319587628866, 0.0577319587628866, 0.0577319587628866, 0.0577319587628866, 0.05567010309278351, 0.05670103092783505, 0.05670103092783505, 0.0577319587628866, 0.9494845360824742, 0.8360824742268042, 0.0577319587628866, 0.11855670103092783, 0.05979381443298969, 0.05670103092783505, 0.05979381443298969, 0.05670103092783505, 0.05360824742268041, 0.05360824742268041, 0.05154639175257732, 0.04845360824742268, 0.049484536082474224, 0.05257731958762887, 0.05257731958762887, 0.050515463917525774, 0.050515463917525774, 0.05154639175257732, 0.05154639175257732, 0.9381443298969072, 0.1154639175257732, 0.10412371134020619, 0.9041237113402062, 0.1, 0.09896907216494845, 0.061855670103092786, 0.060824742268041236, 0.05463917525773196, 0.050515463917525774, 0.050515463917525774, 0.04639175257731959, 0.04845360824742268, 0.04742268041237113, 0.04742268041237113, 0.04536082474226804, 0.04742268041237113, 0.14123711340206185, 0.12886597938144329, 0.1, 0.11237113402061856, 0.0731958762886598, 0.058762886597938144, 0.08041237113402062, 0.049484536082474224, 0.049484536082474224, 0.050515463917525774, 0.05257731958762887, 0.050515463917525774, 0.050515463917525774, 0.05154639175257732, 0.05257731958762887, 0.09896907216494845, 0.0979381443298969, 0.08350515463917525, 0.19896907216494844, 0.07938144329896907, 0.06907216494845361, 0.9381443298969072, 0.061855670103092786, 0.05979381443298969, 0.049484536082474224, 0.05154639175257732, 0.05154639175257732, 0.05257731958762887, 0.05360824742268041, 0.05360824742268041, 0.05360824742268041, 0.05360824742268041, 0.05567010309278351, 0.05567010309278351, 0.05567010309278351, 0.05670103092783505, 0.0577319587628866, 0.05979381443298969, 0.060824742268041236, 0.06391752577319587, 0.06804123711340206, 0.06907216494845361, 0.07216494845360824, 0.0731958762886598, 0.07525773195876288, 0.8824742268041237, 0.9360824742268041, 0.9432989690721649, 0.9226804123711341, 0.38762886597938145, 0.3474226804123711, 0.1309278350515464, 0.20927835051546392, 0.16494845360824742, 0.15257731958762888, 0.19072164948453607, 0.17938144329896907, 0.20309278350515464, 0.1731958762886598, 0.16804123711340208, 0.177319587628866, 0.18041237113402062, 0.18556701030927836, 0.19484536082474227, 0.20309278350515464, 0.23608247422680412, 0.3309278350515464], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DnaA_N.gap.json b/pfam_gap_rates/DnaA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e6b26ac9ce7c6bfd2cb848d246a59d7d42ff7f8
--- /dev/null
+++ b/pfam_gap_rates/DnaA_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dopey_N.gap.json b/pfam_gap_rates/Dopey_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c2ab7ea769c14944fb73b5a60e97ef80464ed15
--- /dev/null
+++ b/pfam_gap_rates/Dopey_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dynamin_M.gap.json b/pfam_gap_rates/Dynamin_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6481b341c60be455bbc6e9a3b11b1687df747b42
--- /dev/null
+++ b/pfam_gap_rates/Dynamin_M.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/E1_4HB.gap.json b/pfam_gap_rates/E1_4HB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9391ec1e0afd712a5f2b8df41a1441517fe55e44
--- /dev/null
+++ b/pfam_gap_rates/E1_4HB.gap.json
@@ -0,0 +1 @@
+{"family": "E1_4HB", "n_seqs": 461, "length": 76, "gap_rates": [0.17136659436008678, 0.09761388286334056, 0.05422993492407809, 0.028199566160520606, 0.02386117136659436, 0.02386117136659436, 0.015184381778741865, 0.013015184381778741, 0.013015184381778741, 0.013015184381778741, 0.013015184381778741, 0.013015184381778741, 0.013015184381778741, 0.010845986984815618, 0.010845986984815618, 0.006507592190889371, 0.9154013015184381, 0.93058568329718, 0.9392624728850325, 0.9240780911062907, 0.9154013015184381, 0.6572668112798264, 0.010845986984815618, 0.008676789587852495, 0.008676789587852495, 0.015184381778741865, 0.013015184381778741, 0.006507592190889371, 0.006507592190889371, 0.008676789587852495, 0.008676789587852495, 0.008676789587852495, 0.010845986984815618, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.004338394793926247, 0.004338394793926247, 0.004338394793926247, 0.0, 0.0, 0.0, 0.0, 0.0021691973969631237, 0.0021691973969631237, 0.0021691973969631237, 0.0021691973969631237, 0.0021691973969631237, 0.0021691973969631237, 0.0021691973969631237, 0.0021691973969631237, 0.006507592190889371, 0.8524945770065075, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.010845986984815618, 0.013015184381778741, 0.013015184381778741, 0.02386117136659436, 0.015184381778741865, 0.021691973969631236, 0.021691973969631236, 0.021691973969631236, 0.021691973969631236, 0.028199566160520606, 0.0368763557483731, 0.052060737527114966, 0.06073752711496746, 0.06290672451193059, 0.06724511930585683, 0.07592190889370933, 0.0824295010845987, 0.11713665943600868, 0.21258134490238612, 0.5921908893709328], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ECH_2.gap.json b/pfam_gap_rates/ECH_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4a3af15b32892f6578b50aef95418075cfe51b3
--- /dev/null
+++ b/pfam_gap_rates/ECH_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ECR1_N.gap.json b/pfam_gap_rates/ECR1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d584fa76b03b527fc77c443df2bef8edfa3c6d96
--- /dev/null
+++ b/pfam_gap_rates/ECR1_N.gap.json
@@ -0,0 +1 @@
+{"family": "ECR1_N", "n_seqs": 502, "length": 43, "gap_rates": [0.29880478087649404, 0.13545816733067728, 0.06374501992031872, 0.035856573705179286, 0.01593625498007968, 0.013944223107569721, 0.013944223107569721, 0.013944223107569721, 0.045816733067729085, 0.9203187250996016, 0.0199203187250996, 0.0099601593625498, 0.00796812749003984, 0.0099601593625498, 0.013944223107569721, 0.0099601593625498, 0.00398406374501992, 0.0, 0.0, 0.0, 0.0, 0.0, 0.027888446215139442, 0.896414342629482, 0.8585657370517928, 0.029880478087649404, 0.037848605577689244, 0.03386454183266932, 0.027888446215139442, 0.9442231075697212, 0.9203187250996016, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.025896414342629483, 0.08167330677290836, 0.1952191235059761, 0.44223107569721115, 0.7768924302788844], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF-1_beta_acid.gap.json b/pfam_gap_rates/EF-1_beta_acid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d425eec836d1c6e05c733264f95d6f37e681925a
--- /dev/null
+++ b/pfam_gap_rates/EF-1_beta_acid.gap.json
@@ -0,0 +1 @@
+{"family": "EF-1_beta_acid", "n_seqs": 311, "length": 28, "gap_rates": [0.03536977491961415, 0.03215434083601286, 0.028938906752411574, 0.02572347266881029, 0.01929260450160772, 0.01607717041800643, 0.012861736334405145, 0.00964630225080386, 0.3890675241157556, 0.06430868167202572, 0.02572347266881029, 0.003215434083601286, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.00964630225080386, 0.012861736334405145, 0.03215434083601286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EFP_N.gap.json b/pfam_gap_rates/EFP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab7df5722bb136b348dc6a153fe069ddb9b674a6
--- /dev/null
+++ b/pfam_gap_rates/EFP_N.gap.json
@@ -0,0 +1 @@
+{"family": "EFP_N", "n_seqs": 2591, "length": 58, "gap_rates": [0.507912003087611, 0.14511771516788885, 0.05326128907757623, 0.03126206098031648, 0.028946352759552298, 0.02740254727904284, 0.02547279042840602, 0.024700887688151294, 0.020069471246622925, 0.016981860285604014, 0.015438054805094558, 0.012350443844075647, 0.00887688151292937, 0.006947124662292551, 0.006947124662292551, 0.0061752219220378235, 0.005789270551910459, 0.005403319181783096, 0.005017367811655731, 0.0034735623311462757, 0.002701659590891548, 0.0023157082207641835, 0.0023157082207641835, 0.002701659590891548, 0.0023157082207641835, 0.0023157082207641835, 0.0023157082207641835, 0.005403319181783096, 0.0023157082207641835, 0.0019297568506368198, 0.0019297568506368198, 0.0019297568506368198, 0.009262832883056734, 0.018139714395986106, 0.01775376302585874, 0.018525665766113468, 0.0192975685063682, 0.0192975685063682, 0.01968351987649556, 0.01968351987649556, 0.01968351987649556, 0.020069471246622925, 0.020069471246622925, 0.020069471246622925, 0.020841373986877652, 0.020841373986877652, 0.021613276727132383, 0.021999228097259745, 0.023157082207641837, 0.026244693168660748, 0.028174450019297567, 0.03126206098031648, 0.03820918564260903, 0.043226553454264766, 0.04940177537630259, 0.06406792744114241, 0.10459282130451564, 0.25858741798533386], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ELYS.gap.json b/pfam_gap_rates/ELYS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e9be9708c735335674fc34679c1b669af136f73
--- /dev/null
+++ b/pfam_gap_rates/ELYS.gap.json
@@ -0,0 +1 @@
+{"family": "ELYS", "n_seqs": 206, "length": 345, "gap_rates": [0.7572815533980582, 0.21359223300970873, 0.19902912621359223, 0.18446601941747573, 0.18446601941747573, 0.1796116504854369, 0.1796116504854369, 0.1796116504854369, 0.1796116504854369, 0.9223300970873787, 0.9271844660194175, 0.9368932038834952, 0.9368932038834952, 0.941747572815534, 0.941747572815534, 0.941747572815534, 0.9466019417475728, 0.941747572815534, 0.941747572815534, 0.941747572815534, 0.9368932038834952, 0.9368932038834952, 0.9223300970873787, 0.9223300970873787, 0.3446601941747573, 0.3106796116504854, 0.2524271844660194, 0.7475728155339806, 0.24757281553398058, 0.2524271844660194, 0.25728155339805825, 0.7184466019417476, 0.6310679611650486, 0.6893203883495146, 0.6941747572815534, 0.7475728155339806, 0.8058252427184466, 0.8883495145631068, 0.9077669902912622, 0.9174757281553398, 0.9223300970873787, 0.9271844660194175, 0.9320388349514563, 0.941747572815534, 0.941747572815534, 0.9466019417475728, 0.941747572815534, 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\ No newline at end of file
diff --git a/pfam_gap_rates/EMG1.gap.json b/pfam_gap_rates/EMG1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30737be8cf00c9b7e89bd74cf31e36e2ccdd3234
--- /dev/null
+++ b/pfam_gap_rates/EMG1.gap.json
@@ -0,0 +1 @@
+{"family": "EMG1", "n_seqs": 446, "length": 235, "gap_rates": [0.25112107623318386, 0.16367713004484305, 0.15695067264573992, 0.15246636771300448, 0.15022421524663676, 0.15022421524663676, 0.15022421524663676, 0.14573991031390135, 0.14573991031390135, 0.14573991031390135, 0.14573991031390135, 0.14573991031390135, 0.14573991031390135, 0.14349775784753363, 0.5874439461883408, 0.6278026905829597, 0.6591928251121076, 0.7017937219730942, 0.7466367713004485, 0.8430493273542601, 0.8878923766816144, 0.899103139013453, 0.899103139013453, 0.8699551569506726, 0.773542600896861, 0.7197309417040358, 0.6748878923766816, 0.6390134529147982, 0.5874439461883408, 0.5650224215246636, 0.5201793721973094, 0.14349775784753363, 0.1367713004484305, 0.13228699551569506, 0.13004484304932734, 0.11883408071748879, 0.11434977578475336, 0.13004484304932734, 0.11210762331838565, 0.11210762331838565, 0.10986547085201794, 0.10762331838565023, 0.11659192825112108, 0.11210762331838565, 0.10986547085201794, 0.10986547085201794, 0.10762331838565023, 0.11434977578475336, 0.10986547085201794, 0.09641255605381166, 0.09192825112107623, 0.08520179372197309, 0.08071748878923767, 0.07847533632286996, 0.07623318385650224, 0.07174887892376682, 0.07174887892376682, 0.06950672645739911, 0.06950672645739911, 0.06950672645739911, 0.06502242152466367, 0.06278026905829596, 0.06278026905829596, 0.06502242152466367, 0.06950672645739911, 0.06726457399103139, 0.06726457399103139, 0.06726457399103139, 0.06278026905829596, 0.06278026905829596, 0.06278026905829596, 0.06726457399103139, 0.06726457399103139, 0.06502242152466367, 0.06502242152466367, 0.07174887892376682, 0.07847533632286996, 0.07399103139013453, 0.06726457399103139, 0.06053811659192825, 0.874439461883408, 0.053811659192825115, 0.0515695067264574, 0.0515695067264574, 0.0515695067264574, 0.0515695067264574, 0.0515695067264574, 0.053811659192825115, 0.0515695067264574, 0.0515695067264574, 0.0515695067264574, 0.0515695067264574, 0.0515695067264574, 0.04484304932735426, 0.04484304932735426, 0.042600896860986545, 0.042600896860986545, 0.042600896860986545, 0.04484304932735426, 0.04035874439461883, 0.042600896860986545, 0.042600896860986545, 0.042600896860986545, 0.042600896860986545, 0.042600896860986545, 0.042600896860986545, 0.04484304932735426, 0.04484304932735426, 0.04932735426008968, 0.04708520179372197, 0.04484304932735426, 0.04932735426008968, 0.04932735426008968, 0.0515695067264574, 0.0515695067264574, 0.04932735426008968, 0.053811659192825115, 0.05829596412556054, 0.06053811659192825, 0.06278026905829596, 0.06053811659192825, 0.05829596412556054, 0.05605381165919283, 0.05605381165919283, 0.06053811659192825, 0.06502242152466367, 0.2062780269058296, 0.10538116591928251, 0.05829596412556054, 0.05829596412556054, 0.06053811659192825, 0.05605381165919283, 0.05829596412556054, 0.06053811659192825, 0.06278026905829596, 0.06053811659192825, 0.06053811659192825, 0.053811659192825115, 0.05605381165919283, 0.05605381165919283, 0.053811659192825115, 0.053811659192825115, 0.053811659192825115, 0.9417040358744395, 0.08520179372197309, 0.06278026905829596, 0.06278026905829596, 0.06053811659192825, 0.06502242152466367, 0.06502242152466367, 0.06502242152466367, 0.06502242152466367, 0.06278026905829596, 0.06278026905829596, 0.06278026905829596, 0.06502242152466367, 0.8183856502242153, 0.5044843049327354, 0.9417040358744395, 0.10986547085201794, 0.16143497757847533, 0.12331838565022421, 0.10089686098654709, 0.09641255605381166, 0.10089686098654709, 0.09865470852017937, 0.06950672645739911, 0.13004484304932734, 0.2802690582959641, 0.8228699551569507, 0.9237668161434978, 0.9394618834080718, 0.9260089686098655, 0.8923766816143498, 0.3609865470852018, 0.25112107623318386, 0.11659192825112108, 0.07174887892376682, 0.08744394618834081, 0.08520179372197309, 0.08744394618834081, 0.07399103139013453, 0.06950672645739911, 0.06950672645739911, 0.07174887892376682, 0.07174887892376682, 0.07174887892376682, 0.07847533632286996, 0.07623318385650224, 0.07399103139013453, 0.07399103139013453, 0.9125560538116592, 0.9125560538116592, 0.12780269058295965, 0.1367713004484305, 0.13452914798206278, 0.12780269058295965, 0.6390134529147982, 0.9439461883408071, 0.6143497757847534, 0.09417040358744394, 0.09192825112107623, 0.09192825112107623, 0.09192825112107623, 0.08744394618834081, 0.9080717488789237, 0.9192825112107623, 0.9439461883408071, 0.9484304932735426, 0.9417040358744395, 0.9103139013452914, 0.9035874439461884, 0.08968609865470852, 0.09192825112107623, 0.09641255605381166, 0.1031390134529148, 0.10762331838565023, 0.10762331838565023, 0.10986547085201794, 0.10986547085201794, 0.10986547085201794, 0.10986547085201794, 0.10986547085201794, 0.10986547085201794, 0.10986547085201794, 0.11434977578475336, 0.11434977578475336, 0.11659192825112108, 0.11883408071748879, 0.11883408071748879, 0.12556053811659193, 0.12780269058295965, 0.1412556053811659, 0.17937219730941703, 0.21076233183856502], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EMI.gap.json b/pfam_gap_rates/EMI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e420fb47504d515341535a9e3cc3965df4225a2
--- /dev/null
+++ b/pfam_gap_rates/EMI.gap.json
@@ -0,0 +1 @@
+{"family": "EMI", "n_seqs": 190, "length": 83, "gap_rates": [0.43157894736842106, 0.21052631578947367, 0.1, 0.09473684210526316, 0.08947368421052632, 0.3526315789473684, 0.4842105263157895, 0.5105263157894737, 0.48947368421052634, 0.4421052631578947, 0.11578947368421053, 0.07894736842105263, 0.07368421052631578, 0.07368421052631578, 0.06842105263157895, 0.06842105263157895, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.07368421052631578, 0.11578947368421053, 0.10526315789473684, 0.05789473684210526, 0.05263157894736842, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.12631578947368421, 0.06842105263157895, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.5631578947368421, 0.5526315789473685, 0.5421052631578948, 0.5157894736842106, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.031578947368421054, 0.45263157894736844, 0.9, 0.868421052631579, 0.08421052631578947, 0.06842105263157895, 0.06315789473684211, 0.05789473684210526, 0.5157894736842106, 0.9263157894736842, 0.6526315789473685, 0.4473684210526316, 0.010526315789473684, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.021052631578947368, 0.021052631578947368, 0.9157894736842105, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03684210526315789, 0.08947368421052632, 0.11578947368421053, 0.4473684210526316], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EPF.gap.json b/pfam_gap_rates/EPF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86cb6919a1a9b450a4169b1f8c0a9c19f8224816
--- /dev/null
+++ b/pfam_gap_rates/EPF.gap.json
@@ -0,0 +1 @@
+{"family": "EPF", "n_seqs": 304, "length": 80, "gap_rates": [0.7039473684210527, 0.03618421052631579, 0.023026315789473683, 0.01644736842105263, 0.01644736842105263, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.013157894736842105, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.009868421052631578, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.003289473684210526, 0.006578947368421052, 0.5394736842105263, 0.555921052631579, 0.6052631578947368, 0.6348684210526315, 0.6578947368421053, 0.6677631578947368, 0.6907894736842105, 0.7203947368421053, 0.7796052631578947, 0.8355263157894737, 0.8782894736842105, 0.9177631578947368, 0.9342105263157895, 0.930921052631579, 0.8980263157894737, 0.8519736842105263, 0.805921052631579, 0.75, 0.6973684210526315, 0.6743421052631579, 0.6611842105263158, 0.6513157894736842, 0.6151315789473685, 0.5789473684210527, 0.5427631578947368, 0.47039473684210525, 0.4243421052631579, 0.16447368421052633, 0.1513157894736842, 0.14144736842105263, 0.02631578947368421, 0.023026315789473683, 0.023026315789473683, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.029605263157894735, 0.03289473684210526, 0.8947368421052632, 0.02631578947368421, 0.023026315789473683, 0.023026315789473683, 0.023026315789473683, 0.023026315789473683, 0.023026315789473683, 0.023026315789473683, 0.023026315789473683, 0.023026315789473683, 0.02631578947368421, 0.02631578947368421, 0.03618421052631579, 0.046052631578947366, 0.06578947368421052, 0.08881578947368421, 0.08881578947368421, 0.20723684210526316], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EnY2.gap.json b/pfam_gap_rates/EnY2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99fdae4be4a7b687a1974f301c0480dadace15ea
--- /dev/null
+++ b/pfam_gap_rates/EnY2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EpmC.gap.json b/pfam_gap_rates/EpmC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba5d17de4f39aecee8c250897a18ee9c4a65dda2
--- /dev/null
+++ b/pfam_gap_rates/EpmC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Erythro_esteras.gap.json b/pfam_gap_rates/Erythro_esteras.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed7cb306d101eeb7815bbeb4b91d10c60ae295d4
--- /dev/null
+++ b/pfam_gap_rates/Erythro_esteras.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Esterase.gap.json b/pfam_gap_rates/Esterase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b99cf7ad15903610441c3e097bd0225a26c6c5b
--- /dev/null
+++ b/pfam_gap_rates/Esterase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Excalibur.gap.json b/pfam_gap_rates/Excalibur.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d0f6c8acfa9e8fec6531d13c042d45964089841
--- /dev/null
+++ b/pfam_gap_rates/Excalibur.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Exo5.gap.json b/pfam_gap_rates/Exo5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8754ae8c304d6843382129ccc0eee1dc66553b6a
--- /dev/null
+++ b/pfam_gap_rates/Exo5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Exo84_C.gap.json b/pfam_gap_rates/Exo84_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d710d2b7080459b0d786bd5ef3ed0efefa789461
--- /dev/null
+++ b/pfam_gap_rates/Exo84_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Exostosin.gap.json b/pfam_gap_rates/Exostosin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aeca8104f01cd9bd1395ae0908014085406375ba
--- /dev/null
+++ b/pfam_gap_rates/Exostosin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Extensin-like_C.gap.json b/pfam_gap_rates/Extensin-like_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f58e3663eedd82a6ccf77c3733e16911db97563
--- /dev/null
+++ b/pfam_gap_rates/Extensin-like_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FAA_hydrolase.gap.json b/pfam_gap_rates/FAA_hydrolase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1499fd12593a0c5e5fbceec489910f41de4bc654
--- /dev/null
+++ b/pfam_gap_rates/FAA_hydrolase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FAA_hydrolase_N.gap.json b/pfam_gap_rates/FAA_hydrolase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c68704592ebb91efcf7bf2d00e88795965207acf
--- /dev/null
+++ b/pfam_gap_rates/FAA_hydrolase_N.gap.json
@@ -0,0 +1 @@
+{"family": "FAA_hydrolase_N", "n_seqs": 561, "length": 113, "gap_rates": [0.19964349376114082, 0.04634581105169341, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.0392156862745098, 0.0392156862745098, 0.040998217468805706, 0.0374331550802139, 0.36363636363636365, 0.9073083778966132, 0.06951871657754011, 0.024955436720142603, 0.9144385026737968, 0.023172905525846704, 0.023172905525846704, 0.023172905525846704, 0.023172905525846704, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.08912655971479501, 0.10695187165775401, 0.22994652406417113, 0.2192513368983957, 0.0873440285204991, 0.08199643493761141, 0.0962566844919786, 0.6773618538324421, 0.9233511586452763, 0.8163992869875223, 0.43493761140819964, 0.18716577540106952, 0.2976827094474153, 0.24242424242424243, 0.16042780748663102, 0.1265597147950089, 0.04634581105169341, 0.035650623885918005, 0.030303030303030304, 0.024955436720142603, 0.024955436720142603, 0.016042780748663103, 0.0196078431372549, 0.017825311942959002, 0.0196078431372549, 0.017825311942959002, 0.0196078431372549, 0.016042780748663103, 0.0106951871657754, 0.0106951871657754, 0.008912655971479501, 0.008912655971479501, 0.008912655971479501, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.45276292335115864, 0.5169340463458111, 0.8502673796791443, 0.8556149732620321, 0.8342245989304813, 0.47058823529411764, 0.4385026737967914, 0.26737967914438504, 0.13725490196078433, 0.11942959001782531, 0.0962566844919786, 0.062388591800356503, 0.035650623885918005, 0.0338680926916221, 0.03208556149732621, 0.026737967914438502, 0.023172905525846704, 0.024955436720142603, 0.024955436720142603, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.0285204991087344, 0.035650623885918005, 0.035650623885918005, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.040998217468805706, 0.0427807486631016, 0.04634581105169341], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FAM91_N.gap.json b/pfam_gap_rates/FAM91_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5dbaaa8aa96b9104947bb6ca3beaae80067b087
--- /dev/null
+++ b/pfam_gap_rates/FAM91_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FANCI_HD2.gap.json b/pfam_gap_rates/FANCI_HD2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95051ebffedaa61c5d915e2c452ef63a4d6b89a5
--- /dev/null
+++ b/pfam_gap_rates/FANCI_HD2.gap.json
@@ -0,0 +1 @@
+{"family": "FANCI_HD2", "n_seqs": 120, "length": 255, "gap_rates": [0.6166666666666667, 0.5, 0.43333333333333335, 0.4083333333333333, 0.36666666666666664, 0.3416666666666667, 0.31666666666666665, 0.3, 0.2833333333333333, 0.2833333333333333, 0.275, 0.26666666666666666, 0.25833333333333336, 0.275, 0.2833333333333333, 0.275, 0.25, 0.25, 0.23333333333333334, 0.23333333333333334, 0.25833333333333336, 0.48333333333333334, 0.35833333333333334, 0.3333333333333333, 0.35, 0.325, 0.825, 0.95, 0.9083333333333333, 0.75, 0.30833333333333335, 0.15833333333333333, 0.15, 0.15, 0.14166666666666666, 0.13333333333333333, 0.125, 0.11666666666666667, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.14166666666666666, 0.13333333333333333, 0.125, 0.11666666666666667, 0.10833333333333334, 0.11666666666666667, 0.125, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.1, 0.10833333333333334, 0.10833333333333334, 0.25833333333333336, 0.25, 0.25, 0.24166666666666667, 0.30833333333333335, 0.30833333333333335, 0.31666666666666665, 0.36666666666666664, 0.2, 0.15, 0.14166666666666666, 0.13333333333333333, 0.13333333333333333, 0.14166666666666666, 0.125, 0.125, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.125, 0.925, 0.925, 0.15833333333333333, 0.15833333333333333, 0.14166666666666666, 0.14166666666666666, 0.13333333333333333, 0.15, 0.15, 0.15, 0.14166666666666666, 0.14166666666666666, 0.15, 0.15, 0.14166666666666666, 0.15, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.16666666666666666, 0.175, 0.175, 0.175, 0.24166666666666667, 0.19166666666666668, 0.19166666666666668, 0.2, 0.2, 0.2, 0.2, 0.2916666666666667, 0.35, 0.43333333333333335, 0.525, 0.48333333333333334, 0.7333333333333333, 0.8083333333333333, 0.95, 0.8333333333333334, 0.8, 0.725, 0.5, 0.575, 0.7916666666666666, 0.8333333333333334, 0.8333333333333334, 0.825, 0.7083333333333334, 0.45, 0.4583333333333333, 0.425, 0.4, 0.35, 0.7666666666666667, 0.475, 0.21666666666666667, 0.2, 0.175, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.175, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.15833333333333333, 0.20833333333333334, 0.31666666666666665, 0.21666666666666667, 0.225, 0.225, 0.225, 0.21666666666666667, 0.225, 0.2, 0.19166666666666668, 0.23333333333333334, 0.18333333333333332, 0.175, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.35833333333333334, 0.35833333333333334, 0.8333333333333334, 0.2, 0.2, 0.19166666666666668, 0.19166666666666668, 0.2, 0.2, 0.20833333333333334, 0.20833333333333334, 0.35, 0.8166666666666667, 0.23333333333333334, 0.25, 0.525, 0.49166666666666664, 0.475, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.21666666666666667, 0.21666666666666667, 0.24166666666666667, 0.24166666666666667, 0.24166666666666667, 0.3, 0.44166666666666665, 0.49166666666666664, 0.65], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FBA.gap.json b/pfam_gap_rates/FBA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f5b58d03c909a0fe1cd2e672739e8b8d7cbb64c
--- /dev/null
+++ b/pfam_gap_rates/FBA.gap.json
@@ -0,0 +1 @@
+{"family": "FBA", "n_seqs": 174, "length": 214, "gap_rates": [0.6551724137931034, 0.6264367816091954, 0.4942528735632184, 0.39655172413793105, 0.3390804597701149, 0.3390804597701149, 0.3045977011494253, 0.2988505747126437, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27011494252873564, 0.27011494252873564, 0.26436781609195403, 0.26436781609195403, 0.3045977011494253, 0.26436781609195403, 0.9482758620689655, 0.2413793103448276, 0.25287356321839083, 0.25862068965517243, 0.3390804597701149, 0.2471264367816092, 0.9482758620689655, 0.2413793103448276, 0.21839080459770116, 0.20114942528735633, 0.20114942528735633, 0.1896551724137931, 0.1896551724137931, 0.19540229885057472, 0.1896551724137931, 0.1896551724137931, 0.19540229885057472, 0.19540229885057472, 0.21839080459770116, 0.21264367816091953, 0.4482758620689655, 0.4425287356321839, 0.4367816091954023, 0.7298850574712644, 0.23563218390804597, 0.23563218390804597, 0.20689655172413793, 0.20689655172413793, 0.25287356321839083, 0.8793103448275862, 0.25862068965517243, 0.2413793103448276, 0.22413793103448276, 0.2471264367816092, 0.8793103448275862, 0.896551724137931, 0.9425287356321839, 0.8850574712643678, 0.8793103448275862, 0.19540229885057472, 0.16091954022988506, 0.16091954022988506, 0.15517241379310345, 0.14942528735632185, 0.13218390804597702, 0.12643678160919541, 0.12643678160919541, 0.1206896551724138, 0.12643678160919541, 0.12643678160919541, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13793103448275862, 0.13793103448275862, 0.14367816091954022, 0.14367816091954022, 0.16666666666666666, 0.1896551724137931, 0.1781609195402299, 0.14942528735632185, 0.15517241379310345, 0.14367816091954022, 0.13793103448275862, 0.13793103448275862, 0.13218390804597702, 0.13218390804597702, 0.14367816091954022, 0.1896551724137931, 0.13218390804597702, 0.12643678160919541, 0.12643678160919541, 0.12643678160919541, 0.12643678160919541, 0.1206896551724138, 0.1206896551724138, 0.1206896551724138, 0.12643678160919541, 0.11494252873563218, 0.11494252873563218, 0.1206896551724138, 0.9425287356321839, 0.1206896551724138, 0.1206896551724138, 0.11494252873563218, 0.1206896551724138, 0.16091954022988506, 0.13218390804597702, 0.11494252873563218, 0.11494252873563218, 0.10919540229885058, 0.11494252873563218, 0.11494252873563218, 0.10919540229885058, 0.10919540229885058, 0.11494252873563218, 0.11494252873563218, 0.9195402298850575, 0.9482758620689655, 0.9482758620689655, 0.9310344827586207, 0.7988505747126436, 0.10919540229885058, 0.13218390804597702, 0.12643678160919541, 0.12643678160919541, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.14367816091954022, 0.14367816091954022, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.9080459770114943, 0.9137931034482759, 0.9195402298850575, 0.9310344827586207, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9367816091954023, 0.9310344827586207, 0.9195402298850575, 0.9137931034482759, 0.9080459770114943, 0.13218390804597702, 0.1781609195402299, 0.1781609195402299, 0.1896551724137931, 0.3218390804597701, 0.9080459770114943, 0.9367816091954023, 0.9482758620689655, 0.9195402298850575, 0.8908045977011494, 0.2413793103448276, 0.21264367816091953, 0.16091954022988506, 0.13218390804597702, 0.11494252873563218, 0.10919540229885058, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.10919540229885058, 0.10919540229885058, 0.13218390804597702, 0.13218390804597702, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.14367816091954022, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.14367816091954022, 0.14367816091954022, 0.14367816091954022, 0.14942528735632185, 0.15517241379310345, 0.14942528735632185, 0.14942528735632185, 0.16091954022988506, 0.1724137931034483, 0.16666666666666666, 0.16091954022988506, 0.16091954022988506, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1839080459770115, 0.1839080459770115, 0.1896551724137931, 0.1896551724137931, 0.1896551724137931, 0.1896551724137931, 0.21839080459770116, 0.23563218390804597, 0.23563218390804597, 0.25862068965517243, 0.28160919540229884, 0.3735632183908046], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FBPase.gap.json b/pfam_gap_rates/FBPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba67d22ad32729687b6756bb3803abb687d32153
--- /dev/null
+++ b/pfam_gap_rates/FBPase.gap.json
@@ -0,0 +1 @@
+{"family": "FBPase", "n_seqs": 1267, "length": 207, "gap_rates": [0.7908445146014207, 0.39779005524861877, 0.36148382004735596, 0.34885556432517756, 0.3393843725335438, 0.3393843725335438, 0.3362273086029992, 0.3283346487766377, 0.31886345698500396, 0.30623520126282555, 0.2896606156274665, 0.2841357537490134, 0.2801894238358327, 0.27229676400947117, 0.2691397000789266, 0.9463299131807419, 0.38752959747434884, 0.22888713496448304, 0.20599842146803474, 0.18468823993685873, 0.16179952644041043, 0.14443567482241515, 0.13180741910023677, 0.12312549329123915, 0.11365430149960537, 0.10812943962115233, 0.10497237569060773, 0.10497237569060773, 0.1026045777426993, 0.10102604577742699, 0.09944751381215469, 0.09865824782951854, 0.0978689818468824, 0.09707971586424625, 0.0978689818468824, 0.09550118389897395, 0.09392265193370165, 0.09392265193370165, 0.09076558800315707, 0.08839779005524862, 0.08602999210734018, 0.08602999210734018, 0.08366219415943173, 0.08918705603788477, 0.19021310181531176, 0.1910023677979479, 0.18232044198895028, 0.16258879242304658, 0.08287292817679558, 0.07971586424625099, 0.07419100236779795, 0.0734017363851618, 0.0718232044198895, 0.06708760852407261, 0.06393054459352802, 0.06314127861089187, 0.06393054459352802, 0.06077348066298342, 0.06077348066298342, 0.05919494869771113, 0.05840568271507498, 0.056827150749802685, 0.056037884767166535, 0.055248618784530384, 0.055248618784530384, 0.05445935280189424, 0.05288082083662194, 0.050513022888713496, 0.049723756906077346, 0.04656669297553275, 0.04577742699289661, 0.04656669297553275, 0.04577742699289661, 0.04656669297553275, 0.0473559589581689, 0.04656669297553275, 0.04656669297553275, 0.04656669297553275, 0.04656669297553275, 0.04577742699289661, 0.08366219415943173, 0.04656669297553275, 0.04498816101026046, 0.04498816101026046, 0.04498816101026046, 0.04419889502762431, 0.042620363062352014, 0.042620363062352014, 0.041831097079715863, 0.041831097079715863, 0.042620363062352014, 0.04419889502762431, 0.04419889502762431, 0.041831097079715863, 0.042620363062352014, 0.0473559589581689, 0.055248618784530384, 0.8942383583267561, 0.9486977111286503, 0.6835043409629045, 0.23204419889502761, 0.20047355958958168, 0.10891870560378848, 0.08918705603788477, 0.055248618784530384, 0.042620363062352014, 0.03946329913180742, 0.03946329913180742, 0.04025256511444357, 0.04025256511444357, 0.04104183109707971, 0.04104183109707971, 0.04104183109707971, 0.04104183109707971, 0.042620363062352014, 0.042620363062352014, 0.043409629044988164, 0.04498816101026046, 0.04498816101026046, 0.04498816101026046, 0.04577742699289661, 0.04419889502762431, 0.04419889502762431, 0.04419889502762431, 0.049723756906077346, 0.04814522494080505, 0.04814522494080505, 0.04814522494080505, 0.04814522494080505, 0.04577742699289661, 0.04656669297553275, 0.04814522494080505, 0.0473559589581689, 0.0473559589581689, 0.0473559589581689, 0.27229676400947117, 0.2123125493291239, 0.2052091554853986, 0.8145224940805051, 0.8737174427782163, 0.9179163378058406, 0.9423835832675612, 0.9455406471981057, 0.9471191791633781, 0.9431728492501973, 0.941594317284925, 0.8973954222573007, 0.8587213891081295, 0.6503551696921863, 0.10102604577742699, 0.0947119179163378, 0.07892659826361484, 0.07813733228097869, 0.11523283346487766, 0.10576164167324388, 0.11365430149960537, 0.601420678768745, 0.17995264404104183, 0.13812154696132597, 0.12312549329123915, 0.11128650355169692, 0.05209155485398579, 0.04498816101026046, 0.042620363062352014, 0.041831097079715863, 0.041831097079715863, 0.041831097079715863, 0.041831097079715863, 0.041831097079715863, 0.042620363062352014, 0.042620363062352014, 0.042620363062352014, 0.042620363062352014, 0.042620363062352014, 0.04419889502762431, 0.04419889502762431, 0.04419889502762431, 0.04498816101026046, 0.04498816101026046, 0.04498816101026046, 0.0473559589581689, 0.0473559589581689, 0.0489344909234412, 0.05288082083662194, 0.056827150749802685, 0.0702446724546172, 0.9486977111286503, 0.9076558800315706, 0.08366219415943173, 0.08208366219415943, 0.08445146014206788, 0.08524072612470403, 0.08760852407261246, 0.08918705603788477, 0.09076558800315707, 0.17048145224940806, 0.1286503551696922, 0.12075769534333071, 0.1254932912391476, 0.1270718232044199, 0.13180741910023677, 0.13417521704814522, 0.13654301499605367, 0.14917127071823205, 0.16574585635359115, 0.2052091554853986, 0.5880031570639306], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FG-GAP.gap.json b/pfam_gap_rates/FG-GAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef89dee62988d2e04e1e8ee2a227a3c719f9aa5f
--- /dev/null
+++ b/pfam_gap_rates/FG-GAP.gap.json
@@ -0,0 +1 @@
+{"family": "FG-GAP", "n_seqs": 2063, "length": 46, "gap_rates": [0.575860397479399, 0.3848763936015511, 0.28502181289384393, 0.15559864275327193, 0.09355307804168686, 0.048473097430925836, 0.014541929229277752, 0.006301502666020358, 0.7314590402326708, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004362578768783325, 0.1992244304411052, 0.8439166262724188, 0.9432864760058167, 0.9083858458555502, 0.6892874454677654, 0.2127968977217644, 0.24139602520601067, 0.8957828405235094, 0.739214735821619, 0.4168686379059622, 0.1546291808046534, 0.09209888511875909, 0.09936984973339796, 0.11003393116820165, 0.1289384391662627, 0.1337857489093553, 0.8036839554047503, 0.5492001938923897, 0.17207949587978671, 0.16965584100824044, 0.1711100339311682, 0.19049927290353855, 0.22055259331071256, 0.39650993698497333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FIST_C.gap.json b/pfam_gap_rates/FIST_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df3be1f38d9bb8c737f88b9121c53317bd9d02cf
--- /dev/null
+++ b/pfam_gap_rates/FIST_C.gap.json
@@ -0,0 +1 @@
+{"family": "FIST_C", "n_seqs": 703, "length": 194, "gap_rates": [0.38975817923186346, 0.3186344238975818, 0.2702702702702703, 0.22190611664295876, 0.21052631578947367, 0.20625889046941678, 0.19914651493598862, 0.1934566145092461, 0.1891891891891892, 0.6998577524893315, 0.8577524893314367, 0.9103840682788051, 0.8847795163584637, 0.7268847795163584, 0.6301564722617354, 0.18776671408250356, 0.23470839260312945, 0.22901849217638692, 0.21763869132290184, 0.20056899004267426, 0.18492176386913228, 0.17069701280227595, 0.16927453769559034, 0.16500711237553342, 0.17354196301564723, 0.8733997155049786, 0.17069701280227595, 0.1593172119487909, 0.8150782361308677, 0.9445234708392604, 0.9317211948790897, 0.406827880512091, 0.3186344238975818, 0.9231863442389758, 0.13229018492176386, 0.12944523470839261, 0.13086770981507823, 0.13086770981507823, 0.13229018492176386, 0.16500711237553342, 0.36415362731152207, 0.6486486486486487, 0.7425320056899004, 0.7823613086770982, 0.9260312944523471, 0.9331436699857752, 0.9359886201991465, 0.9288762446657184, 0.7937411095305832, 0.7724039829302988, 0.6998577524893315, 0.5248933143669986, 0.10953058321479374, 0.11095305832147938, 0.10384068278805121, 0.10384068278805121, 0.10526315789473684, 0.09672830725462304, 0.0953058321479374, 0.09388335704125178, 0.09246088193456614, 0.09246088193456614, 0.09388335704125178, 0.112375533428165, 0.0953058321479374, 0.42105263157894735, 0.21337126600284495, 0.08677098150782361, 0.08677098150782361, 0.08392603129445235, 0.08392603129445235, 0.08392603129445235, 0.08392603129445235, 0.08392603129445235, 0.08250355618776671, 0.07112375533428165, 0.06401137980085349, 0.06116642958748222, 0.059743954480796585, 0.059743954480796585, 0.05832147937411095, 0.05832147937411095, 0.05689900426742532, 0.1721194879089616, 0.16927453769559034, 0.07823613086770982, 0.06970128022759602, 0.05832147937411095, 0.049786628733997154, 0.03840682788051209, 0.02418207681365576, 0.02275960170697013, 0.015647226173541962, 0.015647226173541962, 0.015647226173541962, 0.9018492176386913, 0.9445234708392604, 0.9246088193456614, 0.8733997155049786, 0.01422475106685633, 0.015647226173541962, 0.01422475106685633, 0.01422475106685633, 0.01422475106685633, 0.918918918918919, 0.9431009957325747, 0.903271692745377, 0.01991465149359886, 0.04267425320056899, 0.041251778093883355, 0.03698435277382646, 0.8349928876244666, 0.8435277382645804, 0.8933143669985776, 0.914651493598862, 0.9231863442389758, 0.9317211948790897, 0.9402560455192034, 0.9459459459459459, 0.9487908961593172, 0.9431009957325747, 0.9359886201991465, 0.9274537695590327, 0.918918918918919, 0.9046941678520626, 0.871977240398293, 0.8364153627311522, 0.833570412517781, 0.06970128022759602, 0.155049786628734, 0.29871977240398295, 0.5689900426742532, 0.7823613086770982, 0.8933143669985776, 0.6785206258890469, 0.4182076813655761, 0.16927453769559034, 0.025604551920341393, 0.7126600284495022, 0.8122332859174964, 0.9160739687055477, 0.9487908961593172, 0.8520625889046942, 0.7567567567567568, 0.6870554765291608, 0.001422475106685633, 0.8108108108108109, 0.001422475106685633, 0.001422475106685633, 0.001422475106685633, 0.001422475106685633, 0.001422475106685633, 0.001422475106685633, 0.001422475106685633, 0.001422475106685633, 0.004267425320056899, 0.012802275960170697, 0.012802275960170697, 0.08392603129445235, 0.11095305832147938, 0.8378378378378378, 0.5647226173541963, 0.044096728307254626, 0.03556187766714083, 0.011379800853485065, 0.025604551920341393, 0.31152204836415365, 0.04694167852062589, 0.3314366998577525, 0.049786628733997154, 0.032716927453769556, 0.007112375533428165, 0.005689900426742532, 0.005689900426742532, 0.02418207681365576, 0.029871977240398292, 0.21052631578947367, 0.18492176386913228, 0.15789473684210525, 0.45519203413940257, 0.012802275960170697, 0.008534850640113799, 0.007112375533428165, 0.007112375533428165, 0.007112375533428165, 0.007112375533428165, 0.007112375533428165, 0.008534850640113799, 0.00995732574679943, 0.012802275960170697, 0.01849217638691323, 0.029871977240398292, 0.1166429587482219, 0.5604551920341394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FOLN.gap.json b/pfam_gap_rates/FOLN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fc59fd0779d4fb3ab48abce4e9bb4d8cb8b0b75
--- /dev/null
+++ b/pfam_gap_rates/FOLN.gap.json
@@ -0,0 +1 @@
+{"family": "FOLN", "n_seqs": 113, "length": 22, "gap_rates": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.11504424778761062, 0.0, 0.0, 0.0, 0.0, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FOP_dimer.gap.json b/pfam_gap_rates/FOP_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4760ffce49f2414311e1ece3601cba715f40396
--- /dev/null
+++ b/pfam_gap_rates/FOP_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "FOP_dimer", "n_seqs": 132, "length": 86, "gap_rates": [0.8333333333333334, 0.7424242424242424, 0.6818181818181818, 0.6439393939393939, 0.6439393939393939, 0.5909090909090909, 0.5227272727272727, 0.553030303030303, 0.5681818181818182, 0.5454545454545454, 0.5378787878787878, 0.5227272727272727, 0.5151515151515151, 0.49242424242424243, 0.4696969696969697, 0.4015151515151515, 0.3106060606060606, 0.946969696969697, 0.946969696969697, 0.9318181818181818, 0.21212121212121213, 0.14393939393939395, 0.007575757575757576, 0.007575757575757576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015151515151515152, 0.015151515151515152, 0.007575757575757576, 0.8939393939393939, 0.007575757575757576, 0.9242424242424242, 0.09090909090909091, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.022727272727272728, 0.03787878787878788, 0.4090909090909091, 0.3106060606060606, 0.13636363636363635, 0.11363636363636363, 0.12121212121212122, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.12121212121212122, 0.3409090909090909, 0.6515151515151515], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FTR1.gap.json b/pfam_gap_rates/FTR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5d9aac3e581bbf5ff860b278f9de9fdcb1a1dec
--- /dev/null
+++ b/pfam_gap_rates/FTR1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FTR_C.gap.json b/pfam_gap_rates/FTR_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..028e6e4e199afcca01b93ece6941e72863341e6a
--- /dev/null
+++ b/pfam_gap_rates/FTR_C.gap.json
@@ -0,0 +1 @@
+{"family": "FTR_C", "n_seqs": 103, "length": 155, "gap_rates": [0.02912621359223301, 0.009708737864077669, 0.009708737864077669, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8543689320388349, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.11650485436893204, 0.11650485436893204, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009708737864077669, 0.7669902912621359, 0.0, 0.0, 0.009708737864077669, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009708737864077669, 0.941747572815534, 0.4854368932038835, 0.009708737864077669, 0.009708737864077669, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5339805825242718, 0.5339805825242718, 0.5242718446601942, 0.07766990291262135, 0.0, 0.0, 0.0, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.02912621359223301, 0.10679611650485436], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FUR.gap.json b/pfam_gap_rates/FUR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b639349917a8a6c685bd3c42cd3fe84c4c0f0a8
--- /dev/null
+++ b/pfam_gap_rates/FUR.gap.json
@@ -0,0 +1 @@
+{"family": "FUR", "n_seqs": 4353, "length": 126, "gap_rates": [0.8152997932460372, 0.3381575924649667, 0.1987135308982311, 0.14403859407305306, 0.08270158511371468, 0.05191821732138755, 0.025959108660693776, 0.02297266253158741, 0.02067539627842867, 0.019986216402481046, 0.01722949689869056, 0.015161957270847692, 0.013094417643004824, 0.012405237767057202, 0.011026878015161957, 0.009648518263266712, 0.009648518263266712, 0.010567424764530209, 0.014243050769584195, 0.023891569032850907, 0.037675166551803356, 0.04043188605559384, 0.7507466115322766, 0.012405237767057202, 0.008040431886055594, 0.006202618883528601, 0.005972892258212727, 0.005743165632896853, 0.005743165632896853, 0.006432345508844475, 0.00895933838731909, 0.011945784516425454, 0.013094417643004824, 0.01286469101768895, 0.019297036526533425, 0.025959108660693776, 0.029634734665747762, 0.03216172754422238, 0.023661842407535032, 0.020445669653112796, 0.025959108660693776, 0.03009418791637951, 0.02228348265563979, 0.012175511141741327, 0.010797151389846084, 0.0027567195037904893, 0.0027567195037904893, 0.0027567195037904893, 0.0027567195037904893, 0.0027567195037904893, 0.002297266253158741, 0.002067539627842867, 0.001837813002526993, 0.001837813002526993, 0.0016080863772111188, 0.0016080863772111188, 0.0016080863772111188, 0.0016080863772111188, 0.0016080863772111188, 0.002297266253158741, 0.001837813002526993, 0.004135079255685734, 0.006432345508844475, 0.008270158511371467, 0.01562141052147944, 0.9329198254077647, 0.11233631977946244, 0.04847231794164944, 0.038364346427750974, 0.025499655410062026, 0.02067539627842867, 0.018378130025269928, 0.017688950149322306, 0.018378130025269928, 0.023891569032850907, 0.2687801516195727, 0.7748679071904434, 0.9244199402710774, 0.841258901906731, 0.6368022053756031, 0.07971513898460832, 0.02182402940500804, 0.02067539627842867, 0.02067539627842867, 0.021134849529060418, 0.020445669653112796, 0.020905122903744543, 0.021134849529060418, 0.02228348265563979, 0.02297266253158741, 0.02343211578221916, 0.029864461291063633, 0.025499655410062026, 0.0257293820353779, 0.026878015161957272, 0.029634734665747762, 0.03468872042269699, 0.039283252929014474, 0.05031013094417643, 0.07672869285550195, 0.09395818975419251, 0.14013324144268322, 0.1320928095566276, 0.1419710544452102, 0.1580519182173214, 0.1686193429818516, 0.18263266712611992, 0.19228118538938663, 0.19733517114633586, 0.20192970365265334, 0.2074431426602343, 0.2662531587410981, 0.28210429588789343, 0.25614518722719964, 0.22329427980702962, 0.22421318630829312, 0.22857799218929473, 0.23546979094877096, 0.2510912014702504, 0.2687801516195727, 0.2811853893866299, 0.29221226740179185, 0.3126579370549047, 0.35148173673328736, 0.4201699977027337, 0.6848150700666207], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FUSC.gap.json b/pfam_gap_rates/FUSC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bf32199bde29a78fe1f7e4b8d5dee2a5b65c8d5
--- /dev/null
+++ b/pfam_gap_rates/FUSC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Fcf1.gap.json b/pfam_gap_rates/Fcf1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7b0b383976cbc0fde7173c7316ca646c4e1de2d
--- /dev/null
+++ b/pfam_gap_rates/Fcf1.gap.json
@@ -0,0 +1 @@
+{"family": "Fcf1", "n_seqs": 710, "length": 112, "gap_rates": [0.33943661971830985, 0.17887323943661973, 0.1619718309859155, 0.1563380281690141, 0.13661971830985917, 0.11971830985915492, 0.10704225352112676, 0.10422535211267606, 0.08873239436619719, 0.08169014084507042, 0.08028169014084507, 0.07746478873239436, 0.07323943661971831, 0.07323943661971831, 0.07042253521126761, 0.06901408450704226, 0.06619718309859154, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.059154929577464786, 0.06056338028169014, 0.07183098591549296, 0.09014084507042254, 0.9126760563380282, 0.9070422535211268, 0.10985915492957747, 0.08309859154929577, 0.0676056338028169, 0.06619718309859154, 0.06056338028169014, 0.056338028169014086, 0.056338028169014086, 0.05070422535211268, 0.05352112676056338, 0.48169014084507045, 0.06056338028169014, 0.47746478873239434, 0.054929577464788736, 0.05211267605633803, 0.04929577464788732, 0.04788732394366197, 0.04788732394366197, 0.04788732394366197, 0.04788732394366197, 0.04788732394366197, 0.8436619718309859, 0.9309859154929577, 0.9436619718309859, 0.8802816901408451, 0.7507042253521127, 0.5633802816901409, 0.07887323943661972, 0.06338028169014084, 0.04366197183098591, 0.036619718309859155, 0.036619718309859155, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04507042253521127, 0.04507042253521127, 0.054929577464788736, 0.5816901408450704, 0.8042253521126761, 0.8859154929577465, 0.9492957746478873, 0.8845070422535212, 0.7901408450704225, 0.5619718309859155, 0.08169014084507042, 0.057746478873239436, 0.054929577464788736, 0.054929577464788736, 0.054929577464788736, 0.054929577464788736, 0.054929577464788736, 0.05352112676056338, 0.05352112676056338, 0.05352112676056338, 0.04647887323943662, 0.04929577464788732, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.057746478873239436, 0.07042253521126761, 0.06901408450704226, 0.06338028169014084, 0.061971830985915494, 0.06338028169014084, 0.06338028169014084, 0.0647887323943662, 0.06619718309859154, 0.0676056338028169, 0.06901408450704226, 0.07042253521126761, 0.07464788732394366, 0.08591549295774648, 0.1028169014084507, 0.11971830985915492, 0.1267605633802817, 0.14647887323943662, 0.24507042253521127], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FdhE.gap.json b/pfam_gap_rates/FdhE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24ef890a23f2f7a31bf9e925f78be905b3617c4d
--- /dev/null
+++ b/pfam_gap_rates/FdhE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Fe-S_biosyn.gap.json b/pfam_gap_rates/Fe-S_biosyn.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83fafd36cb6d5f0b1cfc6226cb041c5f9ff4201c
--- /dev/null
+++ b/pfam_gap_rates/Fe-S_biosyn.gap.json
@@ -0,0 +1 @@
+{"family": "Fe-S_biosyn", "n_seqs": 3007, "length": 119, "gap_rates": [0.8067841702693714, 0.7179913535084802, 0.1469903558363818, 0.08247422680412371, 0.03824409710675091, 0.03392085134685733, 0.03225806451612903, 0.03192550714998337, 0.03192550714998337, 0.03126039241769205, 0.02926504822081809, 0.02627203192550715, 0.02560691719321583, 0.02494180246092451, 0.02460924509477885, 0.02460924509477885, 0.02427668772863319, 0.02228134353175923, 0.01928832723644829, 0.017958097771865647, 0.020285999334885268, 0.02527435982707017, 0.07948121050881277, 0.24043897572331227, 0.8889258397073495, 0.4978383771200532, 0.11207183239108746, 0.009644163618224144, 0.008979048885932824, 0.008979048885932824, 0.009311606252078483, 0.008979048885932824, 0.007981376787495843, 0.007648819421350183, 0.007648819421350183, 0.012637179913535085, 0.9291652810109744, 0.9328234120385767, 0.9331559694047223, 0.9318257399401396, 0.9321582973062853, 0.9444629198536748, 0.914865314266711, 0.02427668772863319, 0.03857665447289658, 0.9098769537745262, 0.01962088460259395, 0.015630196208846026, 0.011639507815098104, 0.009311606252078483, 0.008313934153641503, 0.005986032590621883, 0.005320917858330562, 0.006651147322913203, 0.02494180246092451, 0.004323245759893582, 0.02993016295310941, 0.023611572996341867, 0.8077818423678085, 0.9364815430661789, 0.8709677419354839, 0.03225806451612903, 0.009976720984369804, 0.0033255736614566014, 0.0029930162953109413, 0.0033255736614566014, 0.0033255736614566014, 0.0039906883937479215, 0.0033255736614566014, 0.928500166278683, 0.004655803126039242, 0.004988360492184902, 0.004323245759893582, 0.004323245759893582, 0.004323245759893582, 0.0033255736614566014, 0.0036581310276022614, 0.0033255736614566014, 0.0029930162953109413, 0.0033255736614566014, 0.004655803126039242, 0.004655803126039242, 0.005320917858330562, 0.005653475224476222, 0.005986032590621883, 0.006651147322913203, 0.9191885600266045, 0.008646491519787164, 0.008646491519787164, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010641835716661123, 0.011306950448952444, 0.010974393082806785, 0.04556035916195544, 0.0392417692051879, 0.019953441968739608, 0.02228134353175923, 0.023611572996341867, 0.02494180246092451, 0.02893249085467243, 0.030927835051546393, 0.03791153974060525, 0.9178583305620219, 0.04289990023279015, 0.04788826072497506, 0.05154639175257732, 0.057532424343199204, 0.0625207848353841, 0.06950448952444296, 0.08147655470568674, 0.10309278350515463, 0.11972065181243764, 0.12703691386764218, 0.13036248752909876, 0.1376787495843033, 0.16461589624210177, 0.5660126371799136], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FeS.gap.json b/pfam_gap_rates/FeS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67210f7b2fae34589eebd11927a33f13f0373f48
--- /dev/null
+++ b/pfam_gap_rates/FeS.gap.json
@@ -0,0 +1 @@
+{"family": "FeS", "n_seqs": 1418, "length": 33, "gap_rates": [0.23554301833568406, 0.1763046544428773, 0.13399153737658676, 0.005641748942172073, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01692524682651622, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0007052186177715092, 0.0007052186177715092, 0.004231311706629055, 0.010578279266572637, 0.010578279266572637, 0.011988716502115656, 0.019746121297602257, 0.029619181946403384, 0.08321579689703808, 0.07827926657263752, 0.04866008462623413, 0.04936530324400564, 0.05007052186177715, 0.05007052186177715, 0.09026798307475317, 0.2757404795486601], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FemAB_like.gap.json b/pfam_gap_rates/FemAB_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5005dd5c0b118a15596c83c0b249fcd75ff16523
--- /dev/null
+++ b/pfam_gap_rates/FemAB_like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FeoB_N.gap.json b/pfam_gap_rates/FeoB_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c89568db80b4abd529def6d15f442346957ac469
--- /dev/null
+++ b/pfam_gap_rates/FeoB_N.gap.json
@@ -0,0 +1 @@
+{"family": "FeoB_N", "n_seqs": 1768, "length": 165, "gap_rates": [0.8546380090497737, 0.19230769230769232, 0.04072398190045249, 0.033936651583710405, 0.03167420814479638, 0.031108597285067874, 0.031108597285067874, 0.031108597285067874, 0.031108597285067874, 0.030542986425339366, 0.02997737556561086, 0.02997737556561086, 0.02997737556561086, 0.02997737556561086, 0.02997737556561086, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.028846153846153848, 0.02828054298642534, 0.02828054298642534, 0.02828054298642534, 0.02771493212669683, 0.024886877828054297, 0.024321266968325792, 0.024321266968325792, 0.023755656108597284, 0.024321266968325792, 0.02262443438914027, 0.02319004524886878, 0.02262443438914027, 0.02262443438914027, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.021493212669683258, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.31334841628959276, 0.09445701357466063, 0.05995475113122172, 0.8789592760180995, 0.05203619909502263, 0.02262443438914027, 0.022058823529411766, 0.022058823529411766, 0.02092760180995475, 0.02092760180995475, 0.02092760180995475, 0.02092760180995475, 0.020361990950226245, 0.020361990950226245, 0.020361990950226245, 0.022058823529411766, 0.022058823529411766, 0.026018099547511313, 0.9338235294117647, 0.9372171945701357, 0.9309954751131222, 0.02771493212669683, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.029411764705882353, 0.028846153846153848, 0.02828054298642534, 0.02828054298642534, 0.02771493212669683, 0.02771493212669683, 0.03619909502262444, 0.8653846153846154, 0.875, 0.9157239819004525, 0.8687782805429864, 0.8591628959276018, 0.06108597285067873, 0.05429864253393665, 0.030542986425339366, 0.026018099547511313, 0.026018099547511313, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.024886877828054297, 0.024886877828054297, 0.024886877828054297, 0.024886877828054297, 0.024321266968325792, 0.024321266968325792, 0.024321266968325792, 0.024321266968325792, 0.024321266968325792, 0.024886877828054297, 0.024886877828054297, 0.024321266968325792, 0.024321266968325792, 0.024321266968325792, 0.024886877828054297, 0.024886877828054297, 0.025452488687782805, 0.024321266968325792, 0.024321266968325792, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.026018099547511313, 0.026018099547511313, 0.025452488687782805, 0.026018099547511313, 0.025452488687782805, 0.025452488687782805, 0.024886877828054297, 0.024321266968325792, 0.024321266968325792, 0.024321266968325792, 0.024886877828054297, 0.025452488687782805, 0.026583710407239818, 0.030542986425339366, 0.028846153846153848, 0.02828054298642534, 0.026583710407239818, 0.026018099547511313, 0.026583710407239818, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.024886877828054297, 0.024886877828054297, 0.024886877828054297, 0.024886877828054297, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.025452488687782805, 0.026018099547511313, 0.026018099547511313, 0.026018099547511313, 0.027149321266968326, 0.026583710407239818, 0.02828054298642534, 0.031108597285067874, 0.032805429864253395, 0.038461538461538464, 0.04468325791855204, 0.048642533936651584, 0.06108597285067873, 0.08088235294117647, 0.14423076923076922, 0.38009049773755654, 0.7839366515837104], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer2_2.gap.json b/pfam_gap_rates/Fer2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5814adc751a7e88e361c119e6e1452d131dc2d6d
--- /dev/null
+++ b/pfam_gap_rates/Fer2_2.gap.json
@@ -0,0 +1 @@
+{"family": "Fer2_2", "n_seqs": 3254, "length": 91, "gap_rates": [0.05500921942224954, 0.040872771972956363, 0.03933620159803319, 0.03872157344806392, 0.03810694529809465, 0.03779963122311002, 0.14597418561770129, 0.9283958205285802, 0.06822372464658881, 0.09188690842040566, 0.7581438229870928, 0.09096496619545175, 0.05162876459741856, 0.03534111862323294, 0.021204671173939767, 0.01997541487400123, 0.019668100799016593, 0.018131530424093423, 0.017516902274124155, 0.016902274124154886, 0.016594960049170254, 0.016902274124154886, 0.015365703749231715, 0.01567301782421635, 0.01505838967424708, 0.01505838967424708, 0.01505838967424708, 0.01505838967424708, 0.01505838967424708, 0.014751075599262446, 0.01505838967424708, 0.015365703749231715, 0.014751075599262446, 0.014751075599262446, 0.012599877074370006, 0.0107559926244622, 0.006760909649661954, 0.006760909649661954, 0.005838967424708051, 0.006146281499692686, 0.007682851874615857, 0.007375537799631223, 0.007682851874615857, 0.010448678549477565, 0.011063306699446834, 0.012599877074370006, 0.7480024585125998, 0.8561770129071912, 0.8829133374308543, 0.8976644130301168, 0.9035033804548248, 0.9099569760295021, 0.926859250153657, 0.9357713583282115, 0.9323909035033805, 0.9105716041794715, 0.9062692071296865, 0.9004302397049785, 0.8862937922556853, 0.8653964351567301, 0.8500307314074985, 0.044560540872771975, 0.04671173939766441, 0.03933620159803319, 0.03995082974800246, 0.06730178242163491, 0.02427781192378611, 0.01567301782421635, 0.015365703749231715, 0.011677934849416103, 0.008604794099569761, 0.007682851874615857, 0.007682851874615857, 0.0107559926244622, 0.039643515673017826, 0.00921942224953903, 0.00921942224953903, 0.008912108174554395, 0.008912108174554395, 0.00921942224953903, 0.00921942224953903, 0.010141364474492931, 0.011985248924400737, 0.011985248924400737, 0.012599877074370006, 0.01505838967424708, 0.015365703749231715, 0.017209588199139522, 0.027965580823601722, 0.06945298094652735, 0.8027043638598648], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4.gap.json b/pfam_gap_rates/Fer4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a07de3022eb92d0499bfe67b2dda5d713c50f39
--- /dev/null
+++ b/pfam_gap_rates/Fer4.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4", "n_seqs": 5000, "length": 24, "gap_rates": [0.8446, 0.3628, 0.1952, 0.1394, 0.0822, 0.0404, 0.0084, 0.0008, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002, 0.0002, 0.0232, 0.035, 0.0704, 0.1108, 0.1614, 0.5566], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_20.gap.json b/pfam_gap_rates/Fer4_20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..671382c0b45b99ec23770563ec8d959b74bd943d
--- /dev/null
+++ b/pfam_gap_rates/Fer4_20.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_20", "n_seqs": 3294, "length": 121, "gap_rates": [0.7531876138433515, 0.5537340619307832, 0.4502125075895568, 0.40649666059502126, 0.3809957498482089, 0.37249544626593806, 0.3691560412871888, 0.36429872495446264, 0.36156648451730417, 0.3561020036429873, 0.35063752276867033, 0.3472981177899211, 0.34335154826958103, 0.33788706739526414, 0.3293867638129933, 0.31299332119004253, 0.2920461445051609, 0.28111718275652703, 0.2738312082574378, 0.26563448694596237, 0.2580449301760777, 0.24286581663630843, 0.22768670309653916, 0.21250758955676988, 0.20036429872495445, 0.1809350333940498, 0.15907710989678203, 0.17911353976927746, 0.08925318761384335, 0.02671523982999393, 0.006982392228293868, 0.00546448087431694, 0.004553734061930784, 0.0036429872495446266, 0.8269581056466302, 0.9037644201578627, 0.9089253187613844, 0.912568306010929, 0.912568306010929, 0.9116575591985429, 0.9043715846994536, 0.8837279902853673, 0.821190042501518, 0.0030358227079538553, 0.00273224043715847, 0.00273224043715847, 0.00273224043715847, 0.0030358227079538553, 0.00273224043715847, 0.00273224043715847, 0.0030358227079538553, 0.00273224043715847, 0.0030358227079538553, 0.0030358227079538553, 0.0030358227079538553, 0.00273224043715847, 0.0036429872495446266, 0.0036429872495446266, 0.003339404978749241, 0.00273224043715847, 0.00273224043715847, 0.0030358227079538553, 0.0030358227079538553, 0.0030358227079538553, 0.00273224043715847, 0.00273224043715847, 0.0024286581663630845, 0.00273224043715847, 0.0030358227079538553, 0.0030358227079538553, 0.003339404978749241, 0.003339404978749241, 0.003339404978749241, 0.0030358227079538553, 0.00273224043715847, 0.003339404978749241, 0.0036429872495446266, 0.004250151791135397, 0.004857316332726169, 0.00546448087431694, 0.0051608986035215545, 0.0051608986035215545, 0.004250151791135397, 0.0036429872495446266, 0.0036429872495446266, 0.005768063145112325, 0.020947176684881604, 0.6302367941712204, 0.6117182756527019, 0.003946569520340012, 0.003946569520340012, 0.004250151791135397, 0.004553734061930784, 0.0051608986035215545, 0.0051608986035215545, 0.0051608986035215545, 0.00819672131147541, 0.09319975713418337, 0.020036429872495445, 0.01912568306010929, 0.7255616272009715, 0.006982392228293868, 0.006982392228293868, 0.007285974499089253, 0.007285974499089253, 0.007285974499089253, 0.007589556769884639, 0.009714632665452338, 0.01092896174863388, 0.01639344262295082, 0.021554341226472373, 0.030054644808743168, 0.03217972070431087, 0.03551912568306011, 0.044930176077717064, 0.05798421372191864, 0.09319975713418337, 0.16727383120825745, 0.24924104432301153, 0.35974499089253187, 0.6098967820279295], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ferlin_C.gap.json b/pfam_gap_rates/Ferlin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..054a5adca7e116a31db4a817da2c2d572c76705e
--- /dev/null
+++ b/pfam_gap_rates/Ferlin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ferlin_C", "n_seqs": 232, "length": 157, "gap_rates": [0.9224137931034483, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8793103448275862, 0.8793103448275862, 0.8836206896551724, 0.8836206896551724, 0.8836206896551724, 0.8879310344827587, 0.8879310344827587, 0.8879310344827587, 0.8879310344827587, 0.8879310344827587, 0.9267241379310345, 0.9267241379310345, 0.9267241379310345, 0.9137931034482759, 0.8836206896551724, 0.8793103448275862, 0.8793103448275862, 0.8793103448275862, 0.8793103448275862, 0.8793103448275862, 0.8836206896551724, 0.8793103448275862, 0.8793103448275862, 0.875, 0.8793103448275862, 0.8836206896551724, 0.8793103448275862, 0.875, 0.875, 0.875, 0.8793103448275862, 0.8793103448275862, 0.8922413793103449, 0.8879310344827587, 0.8405172413793104, 0.8275862068965517, 0.7887931034482759, 0.75, 0.728448275862069, 0.7025862068965517, 0.6077586206896551, 0.521551724137931, 0.23706896551724138, 0.11637931034482758, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.5646551724137931, 0.5646551724137931, 0.5646551724137931, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.05603448275862069, 0.05172413793103448, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.04310344827586207, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.04310344827586207, 0.04310344827586207, 0.04741379310344827, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05603448275862069, 0.05603448275862069, 0.06465517241379311, 0.0603448275862069, 0.0603448275862069, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06896551724137931, 0.07327586206896551, 0.08189655172413793, 0.09482758620689655, 0.09051724137931035, 0.08189655172413793, 0.09051724137931035, 0.09051724137931035, 0.09051724137931035, 0.09482758620689655, 0.09913793103448276, 0.10775862068965517, 0.11206896551724138, 0.16379310344827586, 0.21982758620689655, 0.28448275862068967, 0.33620689655172414, 0.3620689655172414, 0.4353448275862069, 0.6422413793103449], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fic.gap.json b/pfam_gap_rates/Fic.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e57ff27be5ee8d6bc11ff0419cd234a27ea13476
--- /dev/null
+++ b/pfam_gap_rates/Fic.gap.json
@@ -0,0 +1 @@
+{"family": "Fic", "n_seqs": 3847, "length": 122, "gap_rates": [0.7881466077462959, 0.4068105016896283, 0.3262282297894463, 0.26748115414608786, 0.22926956069664675, 0.20353522225110476, 0.18923836755913698, 0.1845593969326748, 0.1788406550558877, 0.17442162724200677, 0.17364179880426306, 0.1731219131791006, 0.17260202755393814, 0.17104237067845074, 0.17754094099298154, 0.17338185599168182, 0.17130231349103198, 0.17572134130491293, 0.17676111255523785, 0.25994281258123214, 0.6428385755133871, 0.832076943072524, 0.9009617884065506, 0.9459318949831037, 0.9381336106056668, 0.8583311671432284, 0.705484793345464, 0.5113075123472836, 0.2451260722641019, 0.28281778008838054, 0.1512867169222771, 0.14452820379516507, 0.14036911879386535, 0.9399532102937354, 0.9243566415388614, 0.13491031972965947, 0.13776969066805303, 0.24720561476475175, 0.250844814140889, 0.14504808942032754, 0.5791525864309852, 0.6384195476995062, 0.7743696386794905, 0.8687288796464778, 0.927216012477255, 0.7969846633740577, 0.6644138289576293, 0.5903301273719782, 0.5614764751754614, 0.3932934754354042, 0.3787366779308552, 0.11385495191057968, 0.10215752534442422, 0.09565895502989342, 0.09046009877826879, 0.08266181440083181, 0.08006238627501949, 0.07694307252404471, 0.07590330127371978, 0.07408370158565115, 0.072783987522745, 0.07096438783467637, 0.06940473095918898, 0.06836495970886405, 0.072783987522745, 0.07408370158565115, 0.07070444502209514, 0.10657655315830518, 0.19963608006238628, 0.19781648037431765, 0.19287756693527425, 0.08214192877566935, 0.05718741876787107, 0.05068884845334026, 0.04756953470236548, 0.044710163763971925, 0.6732518845853912, 0.8778268780868209, 0.9303353262282298, 0.8913439043410449, 0.7847673511827398, 0.5521185339225371, 0.4099298154406031, 0.26982063945931894, 0.2186119053808162, 0.21419287756693528, 0.2022355081881986, 0.1512867169222771, 0.011957369378736678, 0.010917598128411749, 0.009877826878086821, 0.00857811281518066, 0.007798284377436964, 0.007538341564855732, 0.0070184559396932675, 0.006758513127112035, 0.005978684689368339, 0.005978684689368339, 0.004938913439043411, 0.00363919937613725, 0.0031193137509747857, 0.0025994281258123215, 0.001819599688068625, 0.0015596568754873928, 0.001819599688068625, 0.002079542500649857, 0.0028593709383935534, 0.00363919937613725, 0.004419027813880946, 0.004938913439043411, 0.006238627501949571, 0.006498570314530803, 0.006758513127112035, 0.008318170002599427, 0.009617884065505589, 0.010657655315830517, 0.012477255003899143, 0.01819599688068625, 0.05120873407850273, 0.07902261502469457, 0.1466077462958149, 0.2991941772809982], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fis1_TPR_C.gap.json b/pfam_gap_rates/Fis1_TPR_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8d23f5e144ae86b144f04ec85da9136e40039da
--- /dev/null
+++ b/pfam_gap_rates/Fis1_TPR_C.gap.json
@@ -0,0 +1 @@
+{"family": "Fis1_TPR_C", "n_seqs": 348, "length": 53, "gap_rates": [0.26436781609195403, 0.15229885057471265, 0.1235632183908046, 0.09482758620689655, 0.07183908045977011, 0.06321839080459771, 0.04885057471264368, 0.04310344827586207, 0.03735632183908046, 0.034482758620689655, 0.031609195402298854, 0.017241379310344827, 0.017241379310344827, 0.011494252873563218, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.0028735632183908046, 0.0028735632183908046, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.011494252873563218, 0.017241379310344827, 0.020114942528735632, 0.020114942528735632, 0.022988505747126436, 0.02586206896551724, 0.022988505747126436, 0.031609195402298854, 0.03735632183908046, 0.034482758620689655, 0.03735632183908046, 0.03735632183908046, 0.034482758620689655, 0.03735632183908046, 0.03735632183908046, 0.03735632183908046, 0.04310344827586207, 0.04310344827586207, 0.04885057471264368, 0.05747126436781609, 0.06609195402298851, 0.07183908045977011, 0.08333333333333333, 0.10344827586206896, 0.12931034482758622, 0.14367816091954022, 0.16091954022988506, 0.19540229885057472, 0.2413793103448276, 0.28735632183908044], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FixG_C.gap.json b/pfam_gap_rates/FixG_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..125bc24020a6b8a6f2f185b654bd2dd61b0c9b72
--- /dev/null
+++ b/pfam_gap_rates/FixG_C.gap.json
@@ -0,0 +1 @@
+{"family": "FixG_C", "n_seqs": 544, "length": 138, "gap_rates": [0.38786764705882354, 0.1488970588235294, 0.07904411764705882, 0.05330882352941176, 0.04595588235294118, 0.04411764705882353, 0.03860294117647059, 0.03860294117647059, 0.03860294117647059, 0.03860294117647059, 0.03860294117647059, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03860294117647059, 0.04044117647058824, 0.06066176470588235, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.10845588235294118, 0.03676470588235294, 0.034926470588235295, 0.034926470588235295, 0.034926470588235295, 0.03860294117647059, 0.03308823529411765, 0.03308823529411765, 0.03308823529411765, 0.01838235294117647, 0.014705882352941176, 0.009191176470588236, 0.003676470588235294, 0.003676470588235294, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.001838235294117647, 0.03308823529411765, 0.9246323529411765, 0.03125, 0.009191176470588236, 0.8878676470588235, 0.8088235294117647, 0.0055147058823529415, 0.007352941176470588, 0.007352941176470588, 0.009191176470588236, 0.7775735294117647, 0.8308823529411765, 0.8639705882352942, 0.9466911764705882, 0.8897058823529411, 0.84375, 0.8216911764705882, 0.7720588235294118, 0.3235294117647059, 0.13602941176470587, 0.28125, 0.2647058823529412, 0.13051470588235295, 0.003676470588235294, 0.003676470588235294, 0.003676470588235294, 0.009191176470588236, 0.003676470588235294, 0.003676470588235294, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.0055147058823529415, 0.007352941176470588, 0.007352941176470588, 0.011029411764705883, 0.011029411764705883, 0.8602941176470589, 0.9319852941176471, 0.8529411764705882, 0.08823529411764706, 0.06433823529411764, 0.029411764705882353, 0.01838235294117647, 0.014705882352941176, 0.011029411764705883, 0.9025735294117647, 0.014705882352941176, 0.014705882352941176, 0.016544117647058824, 0.016544117647058824, 0.016544117647058824, 0.016544117647058824, 0.02389705882352941, 0.8327205882352942, 0.9264705882352942, 0.5625, 0.21507352941176472, 0.051470588235294115, 0.9099264705882353, 0.03860294117647059, 0.04411764705882353, 0.04595588235294118, 0.04779411764705882, 0.04779411764705882, 0.04963235294117647, 0.05514705882352941, 0.058823529411764705, 0.0625, 0.06801470588235294, 0.07536764705882353, 0.07536764705882353, 0.08639705882352941, 0.15808823529411764, 0.3474264705882353], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flavodoxin_3.gap.json b/pfam_gap_rates/Flavodoxin_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7fa7e41dbb593ea33bff82bb72ff64c79be9d1a
--- /dev/null
+++ b/pfam_gap_rates/Flavodoxin_3.gap.json
@@ -0,0 +1 @@
+{"family": "Flavodoxin_3", "n_seqs": 212, "length": 169, "gap_rates": [0.4056603773584906, 0.08962264150943396, 0.05188679245283019, 0.04716981132075472, 0.04245283018867924, 0.04245283018867924, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.0330188679245283, 0.9245283018867925, 0.7594339622641509, 0.46226415094339623, 0.18867924528301888, 0.05660377358490566, 0.04245283018867924, 0.03773584905660377, 0.02358490566037736, 0.02358490566037736, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.02358490566037736, 0.0330188679245283, 0.42452830188679247, 0.8254716981132075, 0.8915094339622641, 0.8726415094339622, 0.6745283018867925, 0.14150943396226415, 0.0330188679245283, 0.02358490566037736, 0.014150943396226415, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.018867924528301886, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.018867924528301886, 0.9481132075471698, 0.9339622641509434, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.02358490566037736, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02358490566037736, 0.02358490566037736, 0.04716981132075472, 0.05188679245283019, 0.0660377358490566, 0.07547169811320754, 0.11320754716981132, 0.1320754716981132, 0.14622641509433962, 0.17452830188679244, 0.18396226415094338, 0.1792452830188679, 0.17452830188679244, 0.17452830188679244, 0.1509433962264151, 0.14622641509433962, 0.14622641509433962, 0.15566037735849056, 0.15566037735849056, 0.1650943396226415, 0.1792452830188679, 0.1792452830188679, 0.18396226415094338, 0.18396226415094338, 0.19339622641509435, 0.19811320754716982, 0.8490566037735849, 0.18396226415094338, 0.18867924528301888, 0.18396226415094338, 0.18396226415094338, 0.18396226415094338, 0.1792452830188679, 0.1792452830188679, 0.18396226415094338, 0.18867924528301888, 0.19339622641509435, 0.19811320754716982, 0.2169811320754717, 0.22169811320754718, 0.24528301886792453, 0.24528301886792453, 0.24528301886792453, 0.25471698113207547, 0.25471698113207547, 0.25943396226415094, 0.25943396226415094, 0.2641509433962264, 0.2641509433962264, 0.27358490566037735, 0.3443396226415094, 0.6415094339622641, 0.44339622641509435, 0.4056603773584906, 0.3867924528301887, 0.33490566037735847, 0.32075471698113206, 0.32547169811320753, 0.32547169811320753, 0.32075471698113206, 0.3160377358490566, 0.3160377358490566, 0.3113207547169811, 0.32075471698113206, 0.32075471698113206, 0.33962264150943394, 0.33490566037735847, 0.33490566037735847, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.3443396226415094, 0.33490566037735847, 0.33490566037735847, 0.33490566037735847, 0.33490566037735847, 0.33490566037735847, 0.33490566037735847, 0.33490566037735847, 0.33490566037735847, 0.33490566037735847, 0.33490566037735847, 0.35377358490566035, 0.3632075471698113, 0.3915094339622642, 0.42924528301886794, 0.5566037735849056], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FlbD.gap.json b/pfam_gap_rates/FlbD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcb9e510234e71cad4bdd5291c4d843c56ca4b6e
--- /dev/null
+++ b/pfam_gap_rates/FlbD.gap.json
@@ -0,0 +1 @@
+{"family": "FlbD", "n_seqs": 339, "length": 59, "gap_rates": [0.05604719764011799, 0.04424778761061947, 0.04424778761061947, 0.038348082595870206, 0.029498525073746312, 0.029498525073746312, 0.02359882005899705, 0.02359882005899705, 0.02359882005899705, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.014749262536873156, 0.014749262536873156, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0029498525073746312, 0.0058997050147492625, 0.011799410029498525, 0.014749262536873156, 0.017699115044247787, 0.02064896755162242, 0.029498525073746312, 0.04424778761061947, 0.14749262536873156, 0.7846607669616519], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FlgI.gap.json b/pfam_gap_rates/FlgI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80ded648ceac17059305a98f27fedf05bf4739b1
--- /dev/null
+++ b/pfam_gap_rates/FlgI.gap.json
@@ -0,0 +1 @@
+{"family": "FlgI", "n_seqs": 603, "length": 358, "gap_rates": [0.14593698175787728, 0.0945273631840796, 0.087893864013267, 0.07462686567164178, 0.06799336650082918, 0.06301824212271974, 0.06301824212271974, 0.06301824212271974, 0.06135986733001658, 0.05804311774461028, 0.05804311774461028, 0.05804311774461028, 0.05804311774461028, 0.05804311774461028, 0.05804311774461028, 0.05472636815920398, 0.05472636815920398, 0.05306799336650083, 0.05306799336650083, 0.05306799336650083, 0.05306799336650083, 0.05306799336650083, 0.05140961857379768, 0.05140961857379768, 0.05140961857379768, 0.04975124378109453, 0.04975124378109453, 0.04975124378109453, 0.04975124378109453, 0.04975124378109453, 0.04975124378109453, 0.3880597014925373, 0.2470978441127695, 0.18407960199004975, 0.11774461028192372, 0.07628524046434494, 0.05140961857379768, 0.05140961857379768, 0.04809286898839138, 0.04809286898839138, 0.04809286898839138, 0.04809286898839138, 0.05140961857379768, 0.05140961857379768, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Flg_hook.gap.json b/pfam_gap_rates/Flg_hook.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a219bf93829b5ccaf2783e7bcb51ff92c781246
--- /dev/null
+++ b/pfam_gap_rates/Flg_hook.gap.json
@@ -0,0 +1 @@
+{"family": "Flg_hook", "n_seqs": 1044, "length": 84, "gap_rates": [0.8323754789272031, 0.6791187739463601, 0.5775862068965517, 0.4722222222222222, 0.38601532567049807, 0.2950191570881226, 0.21551724137931033, 0.15517241379310345, 0.1024904214559387, 0.06321839080459771, 0.039272030651340994, 0.02490421455938697, 0.01532567049808429, 0.0038314176245210726, 0.0038314176245210726, 0.0019157088122605363, 0.0019157088122605363, 0.0019157088122605363, 0.0019157088122605363, 0.0019157088122605363, 0.0019157088122605363, 0.0019157088122605363, 0.006704980842911878, 0.0019157088122605363, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.8706896551724138, 0.004789272030651341, 0.0028735632183908046, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0009578544061302681, 0.019157088122605363, 0.004789272030651341, 0.0028735632183908046, 0.009578544061302681, 0.0019157088122605363, 0.0028735632183908046, 0.0019157088122605363, 0.0019157088122605363, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0009578544061302681, 0.0019157088122605363, 0.0038314176245210726, 0.0038314176245210726, 0.004789272030651341, 0.005747126436781609, 0.007662835249042145, 0.007662835249042145, 0.009578544061302681, 0.019157088122605363, 0.022988505747126436, 0.022030651340996167, 0.022030651340996167, 0.02490421455938697, 0.027777777777777776, 0.08908045977011494, 0.05459770114942529, 0.06226053639846743, 0.07567049808429119, 0.09770114942528736, 0.1446360153256705, 0.18199233716475097, 0.25287356321839083, 0.34674329501915707, 0.44061302681992337, 0.6235632183908046, 0.8045977011494253], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliD_N.gap.json b/pfam_gap_rates/FliD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93377cac81ca4491e57b5b2caf66173565a5156b
--- /dev/null
+++ b/pfam_gap_rates/FliD_N.gap.json
@@ -0,0 +1 @@
+{"family": "FliD_N", "n_seqs": 783, "length": 110, "gap_rates": [0.21966794380587484, 0.16475095785440613, 0.11749680715197956, 0.09450830140485313, 0.07790549169859515, 0.04980842911877394, 0.035759897828863345, 0.02681992337164751, 0.022988505747126436, 0.020434227330779056, 0.019157088122605363, 0.016602809706257982, 0.01532567049808429, 0.0140485312899106, 0.0140485312899106, 0.0140485312899106, 0.01532567049808429, 0.01532567049808429, 0.8505747126436781, 0.01277139208173691, 0.008939974457215836, 0.008939974457215836, 0.008939974457215836, 0.8939974457215837, 0.007662835249042145, 0.008939974457215836, 0.007662835249042145, 0.006385696040868455, 0.006385696040868455, 0.005108556832694764, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.002554278416347382, 0.001277139208173691, 0.001277139208173691, 0.0, 0.0, 0.001277139208173691, 0.001277139208173691, 0.001277139208173691, 0.001277139208173691, 0.001277139208173691, 0.001277139208173691, 0.001277139208173691, 0.001277139208173691, 0.001277139208173691, 0.001277139208173691, 0.001277139208173691, 0.017879948914431672, 0.016602809706257982, 0.9042145593869731, 0.9080459770114943, 0.9246487867177522, 0.909323116219668, 0.9054916985951469, 0.8748403575989783, 0.0038314176245210726, 0.909323116219668, 0.02554278416347382, 0.011494252873563218, 0.9348659003831418, 0.9246487867177522, 0.02681992337164751, 0.022988505747126436, 0.8710089399744572, 0.01532567049808429, 0.007662835249042145, 0.007662835249042145, 0.008939974457215836, 0.04342273307790549, 0.022988505747126436, 0.037037037037037035, 0.006385696040868455, 0.002554278416347382, 0.0038314176245210726, 0.006385696040868455, 0.006385696040868455, 0.04469987228607918, 0.02554278416347382, 0.9374201787994891, 0.02937420178799489, 0.02681992337164751, 0.04853128991060025, 0.007662835249042145, 0.006385696040868455, 0.007662835249042145, 0.03065134099616858, 0.021711366538952746, 0.019157088122605363, 0.022988505747126436, 0.016602809706257982, 0.01277139208173691, 0.011494252873563218, 0.0140485312899106, 0.016602809706257982, 0.016602809706257982, 0.016602809706257982, 0.01532567049808429, 0.01532567049808429, 0.02554278416347382, 0.02681992337164751, 0.02937420178799489, 0.033205619412515965, 0.038314176245210725, 0.04469987228607918, 0.13793103448275862, 0.6334610472541508], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliW.gap.json b/pfam_gap_rates/FliW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd3b81f6e0cc8e2c1fe218be7627ea9347bfab2b
--- /dev/null
+++ b/pfam_gap_rates/FliW.gap.json
@@ -0,0 +1 @@
+{"family": "FliW", "n_seqs": 464, "length": 125, "gap_rates": [0.3599137931034483, 0.10129310344827586, 0.02586206896551724, 0.023706896551724137, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.015086206896551725, 0.015086206896551725, 0.015086206896551725, 0.017241379310344827, 0.017241379310344827, 0.021551724137931036, 0.015086206896551725, 0.015086206896551725, 0.015086206896551725, 0.015086206896551725, 0.015086206896551725, 0.09051724137931035, 0.6831896551724138, 0.15732758620689655, 0.11206896551724138, 0.04525862068965517, 0.034482758620689655, 0.017241379310344827, 0.9310344827586207, 0.9073275862068966, 0.01293103448275862, 0.010775862068965518, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.00646551724137931, 0.017241379310344827, 0.008620689655172414, 0.00646551724137931, 0.04525862068965517, 0.00646551724137931, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.00646551724137931, 0.010775862068965518, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.05818965517241379, 0.01293103448275862, 0.010775862068965518, 0.008620689655172414, 0.008620689655172414, 0.010775862068965518, 0.01293103448275862, 0.008620689655172414, 0.01293103448275862, 0.017241379310344827, 0.015086206896551725, 0.01293103448275862, 0.01293103448275862, 0.01293103448275862, 0.017241379310344827, 0.023706896551724137, 0.036637931034482756, 0.04310344827586207, 0.028017241379310345, 0.008620689655172414, 0.010775862068965518, 0.008620689655172414, 0.00646551724137931, 0.004310344827586207, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.036637931034482756, 0.03017241379310345, 0.07758620689655173, 0.05603448275862069, 0.9482758620689655, 0.7887931034482759, 0.004310344827586207, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.004310344827586207, 0.004310344827586207, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.0021551724137931034, 0.01293103448275862, 0.01293103448275862, 0.0668103448275862, 0.034482758620689655, 0.04741379310344827, 0.05818965517241379, 0.05818965517241379, 0.06896551724137931, 0.11206896551724138, 0.13577586206896552, 0.15301724137931033, 0.20043103448275862, 0.4073275862068966], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FoP_duplication.gap.json b/pfam_gap_rates/FoP_duplication.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b437ebb6d1d293f13740833b2c34cab74bcebdea
--- /dev/null
+++ b/pfam_gap_rates/FoP_duplication.gap.json
@@ -0,0 +1 @@
+{"family": "FoP_duplication", "n_seqs": 474, "length": 88, "gap_rates": [0.9135021097046413, 0.8122362869198312, 0.7194092827004219, 0.6455696202531646, 0.5843881856540084, 0.5443037974683544, 0.4936708860759494, 0.43670886075949367, 0.37130801687763715, 0.31856540084388185, 0.28270042194092826, 0.24261603375527427, 0.21308016877637131, 0.1940928270042194, 0.17932489451476794, 0.1518987341772152, 0.1308016877637131, 0.11392405063291139, 0.12025316455696203, 0.09282700421940929, 0.08438818565400844, 0.06962025316455696, 0.07172995780590717, 0.06118143459915612, 0.05063291139240506, 0.06329113924050633, 0.9493670886075949, 0.8565400843881856, 0.04219409282700422, 0.029535864978902954, 0.02109704641350211, 0.012658227848101266, 0.008438818565400843, 0.035864978902953586, 0.014767932489451477, 0.008438818565400843, 0.010548523206751054, 0.014767932489451477, 0.023206751054852322, 0.05485232067510549, 0.06540084388185655, 0.890295358649789, 0.9345991561181435, 0.79957805907173, 0.4345991561181435, 0.22151898734177214, 0.08016877637130802, 0.05485232067510549, 0.02531645569620253, 0.004219409282700422, 0.002109704641350211, 0.002109704641350211, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.008438818565400843, 0.012658227848101266, 0.08860759493670886, 0.8649789029535865, 0.9282700421940928, 0.8122362869198312, 0.7151898734177216, 0.47890295358649787, 0.6054852320675106, 0.8312236286919831, 0.7679324894514767, 0.7827004219409283, 0.7848101265822784, 0.7890295358649789, 0.7911392405063291, 0.79957805907173, 0.79957805907173, 0.79957805907173, 0.8016877637130801, 0.8037974683544303, 0.8037974683544303, 0.8037974683544303, 0.8037974683544303, 0.810126582278481, 0.8396624472573839, 0.9324894514767933], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Forkhead.gap.json b/pfam_gap_rates/Forkhead.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c83186e0987c3b8c19f3b5d10b9801c1a1bb659d
--- /dev/null
+++ b/pfam_gap_rates/Forkhead.gap.json
@@ -0,0 +1 @@
+{"family": "Forkhead", "n_seqs": 2521, "length": 93, "gap_rates": [0.1721539071796906, 0.1626338754462515, 0.1174137247124157, 0.09797699325664419, 0.06941689805632685, 0.06505355017850059, 0.06386354621182071, 0.06029353431178104, 0.057120190400634666, 0.056723522411741376, 0.053550178500595, 0.04046013486711622, 0.04006346687822293, 0.04006346687822293, 0.039666798889329634, 0.06505355017850059, 0.05156683855612852, 0.04046013486711622, 0.03927013090043634, 0.03887346291154304, 0.036890122967076555, 0.033716779055930186, 0.03332011106703689, 0.03292344307814359, 0.0317334391114637, 0.030543435144783818, 0.029750099166997224, 0.02816342721142404, 0.028560095200317333, 0.027766759222530742, 0.028560095200317333, 0.02895676318921063, 0.029750099166997224, 0.027766759222530742, 0.02697342324474415, 0.025386751289170964, 0.02578341927806426, 0.02697342324474415, 0.025386751289170964, 0.8936929789765966, 0.9345497818326061, 0.9488298294327647, 0.9266164220547402, 0.839349464498215, 0.028560095200317333, 0.03887346291154304, 0.039666798889329634, 0.03411344704482348, 0.032130107100357, 0.030543435144783818, 0.02578341927806426, 0.02816342721142404, 0.030543435144783818, 0.03292344307814359, 0.03490678302261008, 0.03609678698928996, 0.03609678698928996, 0.036890122967076555, 0.03847679492264974, 0.03927013090043634, 0.042443474811582706, 0.04165013883379611, 0.042443474811582706, 0.042840142800476, 0.04482348274494248, 0.04522015073383578, 0.04720349067830226, 0.05077350257834193, 0.10591035303451012, 0.06941689805632685, 0.1725505751685839, 0.31336771122570406, 0.9163030543435144, 0.8441094803649345, 0.29393097976993254, 0.15668385561285203, 0.07735025783419278, 0.07735025783419278, 0.07893692978976596, 0.08092026973423244, 0.08330027766759222, 0.08449028163427211, 0.09282030940103134, 0.096390321301071, 0.10234034113447045, 0.1297104323681079, 0.16739389131297105, 0.23046410154700517, 0.32566441888139624, 0.38159460531535105, 0.44387147957159856, 0.5113050376834589, 0.9198730662435541], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Formyl_trans_N.gap.json b/pfam_gap_rates/Formyl_trans_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c920aab4c7dd0035487f706803b4da57ff0c18b3
--- /dev/null
+++ b/pfam_gap_rates/Formyl_trans_N.gap.json
@@ -0,0 +1 @@
+{"family": "Formyl_trans_N", "n_seqs": 5000, "length": 196, "gap_rates": [0.7052, 0.3072, 0.2472, 0.223, 0.2068, 0.2102, 0.5038, 0.4818, 0.1796, 0.177, 0.1734, 0.172, 0.17, 0.1692, 0.1652, 0.1624, 0.1602, 0.1568, 0.1528, 0.1528, 0.1546, 0.1608, 0.1612, 0.157, 0.156, 0.1654, 0.2286, 0.9126, 0.4486, 0.3816, 0.1286, 0.1256, 0.1234, 0.1228, 0.124, 0.1232, 0.1226, 0.123, 0.1244, 0.1256, 0.122, 0.1228, 0.2656, 0.2558, 0.141, 0.1328, 0.1262, 0.1232, 0.1212, 0.1186, 0.1202, 0.1174, 0.1162, 0.1152, 0.1154, 0.1134, 0.113, 0.1154, 0.1198, 0.1246, 0.1254, 0.5868, 0.8866, 0.9288, 0.9434, 0.9402, 0.9174, 0.606, 0.5796, 0.1442, 0.1282, 0.122, 0.1256, 0.944, 0.2366, 0.1432, 0.1182, 0.1036, 0.0822, 0.0728, 0.07, 0.064, 0.0596, 0.0556, 0.0522, 0.0546, 0.0562, 0.0546, 0.0418, 0.035, 0.0332, 0.0296, 0.0278, 0.0274, 0.0272, 0.0258, 0.0258, 0.0308, 0.0524, 0.0236, 0.0222, 0.0218, 0.0238, 0.024, 0.0236, 0.0238, 0.0238, 0.0208, 0.0198, 0.0222, 0.0216, 0.0228, 0.0634, 0.0372, 0.0148, 0.014, 0.0134, 0.0136, 0.0132, 0.0134, 0.0172, 0.0134, 0.0128, 0.0128, 0.0202, 0.9054, 0.9068, 0.907, 0.9064, 0.9046, 0.0126, 0.0132, 0.014, 0.0132, 0.013, 0.0138, 0.0136, 0.0136, 0.0136, 0.0136, 0.0136, 0.0138, 0.0204, 0.0146, 0.0148, 0.0146, 0.014, 0.014, 0.0138, 0.0138, 0.0142, 0.0134, 0.0142, 0.0146, 0.0144, 0.0154, 0.0152, 0.0156, 0.0158, 0.0158, 0.0158, 0.0156, 0.0156, 0.0158, 0.017, 0.0182, 0.0188, 0.0218, 0.0254, 0.0308, 0.0382, 0.0456, 0.049, 0.0526, 0.0526, 0.0552, 0.057, 0.0586, 0.0604, 0.0622, 0.0678, 0.0726, 0.0754, 0.0794, 0.0862, 0.0956, 0.1056, 0.1176, 0.1256, 0.1346, 0.1418, 0.1552, 0.1924, 0.2338, 0.3358, 0.558], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fructosamin_kin.gap.json b/pfam_gap_rates/Fructosamin_kin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1296ef593a1dc6f6065746bc0d633be4c8ca8fa3
--- /dev/null
+++ b/pfam_gap_rates/Fructosamin_kin.gap.json
@@ -0,0 +1 @@
+{"family": "Fructosamin_kin", "n_seqs": 877, "length": 343, "gap_rates": [0.9053591790193842, 0.8597491448118586, 0.8358038768529077, 0.8175598631698974, 0.7993158494868872, 0.7867730900798175, 0.7708095781071835, 0.7571265678449259, 0.7297605473204105, 0.7103762827822121, 0.69327251995439, 0.6784492588369442, 0.6738882554161916, 0.6602052451539339, 0.6419612314709237, 0.636259977194983, 0.7058152793614595, 0.5997719498289624, 0.5324971493728621, 0.5188141391106044, 0.5017103762827823, 0.4868871151653364, 0.475484606613455, 0.467502850627138, 0.4572405929304447, 0.443557582668187, 0.4412770809578107, 0.43329532497149376, 0.4298745724059293, 0.42303306727480045, 0.4127708095781072, 0.40935005701254273, 0.40364880273660203, 0.3945267958950969, 0.40250855188141393, 0.37970353477765106, 0.35119726339794755, 0.8494868871151653, 0.3055872291904219, 0.28848346636259975, 0.2702394526795895, 0.25997719498289623, 0.25655644241733183, 0.2451539338654504, 0.233751425313569, 0.23033067274800456, 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\ No newline at end of file
diff --git a/pfam_gap_rates/G3P_acyltransf.gap.json b/pfam_gap_rates/G3P_acyltransf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a39b412dbadf4a616901d7f1bc68ba41ce487ad
--- /dev/null
+++ b/pfam_gap_rates/G3P_acyltransf.gap.json
@@ -0,0 +1 @@
+{"family": "G3P_acyltransf", "n_seqs": 1550, "length": 201, "gap_rates": [0.33419354838709675, 0.03354838709677419, 0.027741935483870966, 0.023225806451612905, 0.02193548387096774, 0.02193548387096774, 0.02129032258064516, 0.02129032258064516, 0.02129032258064516, 0.02129032258064516, 0.02129032258064516, 0.02129032258064516, 0.02129032258064516, 0.02064516129032258, 0.02, 0.02129032258064516, 0.02, 0.2270967741935484, 0.024516129032258065, 0.02064516129032258, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01870967741935484, 0.02064516129032258, 0.02064516129032258, 0.01806451612903226, 0.017419354838709676, 0.016774193548387096, 0.016774193548387096, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016774193548387096, 0.016129032258064516, 0.014838709677419355, 0.014838709677419355, 0.014838709677419355, 0.014838709677419355, 0.015483870967741935, 0.015483870967741935, 0.015483870967741935, 0.015483870967741935, 0.014193548387096775, 0.014193548387096775, 0.014193548387096775, 0.014193548387096775, 0.013548387096774193, 0.013548387096774193, 0.013548387096774193, 0.013548387096774193, 0.013548387096774193, 0.014838709677419355, 0.013548387096774193, 0.014193548387096775, 0.017419354838709676, 0.01935483870967742, 0.02838709677419355, 0.027741935483870966, 0.02838709677419355, 0.02064516129032258, 0.03354838709677419, 0.036774193548387096, 0.04258064516129032, 0.2470967741935484, 0.5961290322580645, 0.66, 0.7741935483870968, 0.8619354838709677, 0.9012903225806451, 0.9348387096774193, 0.9425806451612904, 0.9225806451612903, 0.8864516129032258, 0.8354838709677419, 0.7380645161290322, 0.6393548387096775, 0.4832258064516129, 0.09161290322580645, 0.03806451612903226, 0.035483870967741936, 0.032903225806451615, 0.017419354838709676, 0.012903225806451613, 0.012903225806451613, 0.012258064516129033, 0.012258064516129033, 0.012258064516129033, 0.012258064516129033, 0.012258064516129033, 0.012258064516129033, 0.012258064516129033, 0.012903225806451613, 0.012903225806451613, 0.035483870967741936, 0.03612903225806452, 0.03612903225806452, 0.034193548387096775, 0.027741935483870966, 0.023225806451612905, 0.02258064516129032, 0.012903225806451613, 0.012903225806451613, 0.014193548387096775, 0.013548387096774193, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012258064516129033, 0.011612903225806452, 0.012258064516129033, 0.012258064516129033, 0.012258064516129033, 0.023870967741935485, 0.013548387096774193, 0.9387096774193548, 0.9135483870967742, 0.014193548387096775, 0.023870967741935485, 0.01870967741935484, 0.015483870967741935, 0.013548387096774193, 0.015483870967741935, 0.012903225806451613, 0.013548387096774193, 0.014838709677419355, 0.01806451612903226, 0.014838709677419355, 0.014193548387096775, 0.014193548387096775, 0.015483870967741935, 0.014838709677419355, 0.016774193548387096, 0.014193548387096775, 0.013548387096774193, 0.013548387096774193, 0.014193548387096775, 0.014838709677419355, 0.014193548387096775, 0.013548387096774193, 0.012258064516129033, 0.012258064516129033, 0.012258064516129033, 0.012258064516129033, 0.02, 0.02129032258064516, 0.024516129032258065, 0.02, 0.01806451612903226, 0.014838709677419355, 0.01806451612903226, 0.024516129032258065, 0.026451612903225806, 0.025161290322580646, 0.03354838709677419, 0.04838709677419355, 0.013548387096774193, 0.014838709677419355, 0.08129032258064516, 0.6058064516129033, 0.7232258064516129, 0.7993548387096774, 0.8567741935483871, 0.8864516129032258, 0.9051612903225806, 0.8729032258064516, 0.8387096774193549, 0.7606451612903226, 0.6819354838709677, 0.28258064516129033, 0.017419354838709676, 0.014838709677419355, 0.013548387096774193, 0.03806451612903226, 0.025161290322580646, 0.02193548387096774, 0.02129032258064516, 0.02064516129032258, 0.02, 0.02, 0.02064516129032258, 0.02193548387096774, 0.023225806451612905, 0.02967741935483871, 0.034193548387096775, 0.04, 0.05032258064516129, 0.06258064516129032, 0.07096774193548387, 0.07677419354838709, 0.08580645161290322, 0.08774193548387096, 0.10387096774193548, 0.11741935483870967, 0.14], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GA.gap.json b/pfam_gap_rates/GA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d501ce2008fbb21d70f770cb88c5264aadc8066
--- /dev/null
+++ b/pfam_gap_rates/GA.gap.json
@@ -0,0 +1 @@
+{"family": "GA", "n_seqs": 144, "length": 61, "gap_rates": [0.6944444444444444, 0.5763888888888888, 0.4930555555555556, 0.4305555555555556, 0.4166666666666667, 0.4097222222222222, 0.4097222222222222, 0.3819444444444444, 0.375, 0.3541666666666667, 0.2638888888888889, 0.1736111111111111, 0.1111111111111111, 0.041666666666666664, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.9444444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013888888888888888, 0.020833333333333332, 0.020833333333333332, 0.027777777777777776, 0.027777777777777776, 0.034722222222222224, 0.041666666666666664, 0.05555555555555555, 0.09722222222222222, 0.10416666666666667, 0.1597222222222222, 0.2361111111111111, 0.4375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GARS_N.gap.json b/pfam_gap_rates/GARS_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4a542d017128db71757343d3ba58c2d6a9e7d3a0
--- /dev/null
+++ b/pfam_gap_rates/GARS_N.gap.json
@@ -0,0 +1 @@
+{"family": "GARS_N", "n_seqs": 2118, "length": 108, "gap_rates": [0.2719546742209632, 0.06610009442870633, 0.02927289896128423, 0.020302171860245515, 0.019830028328611898, 0.017469310670443813, 0.0169971671388102, 0.016525023607176583, 0.016052880075542966, 0.016052880075542966, 0.016052880075542966, 0.016052880075542966, 0.016052880075542966, 0.016052880075542966, 0.014636449480642116, 0.013692162417374882, 0.013220018885741265, 0.0113314447592068, 0.010859301227573183, 0.010387157695939566, 0.010387157695939566, 0.010387157695939566, 0.02644003777148253, 0.033050047214353166, 0.032577903682719546, 0.014164305949008499, 0.021246458923512748, 0.010387157695939566, 0.008970727101038715, 0.008970727101038715, 0.007554296506137866, 0.007554296506137866, 0.007554296506137866, 0.007082152974504249, 0.008026440037771483, 0.007554296506137866, 0.0066100094428706326, 0.015108593012275733, 0.016052880075542966, 0.016525023607176583, 0.01935788479697828, 0.06185080264400378, 0.6270066100094429, 0.8847969782813976, 0.9423984891406988, 0.7214353163361662, 0.07318224740321058, 0.03352219074598678, 0.01794145420207743, 0.016052880075542966, 0.015108593012275733, 0.014164305949008499, 0.005193578847969783, 0.025967894239848913, 0.023607176581680833, 0.015108593012275733, 0.0033050047214353163, 0.003777148253068933, 0.003777148253068933, 0.003777148253068933, 0.00424929178470255, 0.003777148253068933, 0.003777148253068933, 0.00424929178470255, 0.007082152974504249, 0.003777148253068933, 0.00424929178470255, 0.003777148253068933, 0.0028328611898017, 0.0028328611898017, 0.0033050047214353163, 0.0033050047214353163, 0.003777148253068933, 0.003777148253068933, 0.003777148253068933, 0.00424929178470255, 0.00424929178470255, 0.00424929178470255, 0.00424929178470255, 0.004721435316336166, 0.005193578847969783, 0.005193578847969783, 0.005193578847969783, 0.0056657223796034, 0.0056657223796034, 0.0056657223796034, 0.008970727101038715, 0.009915014164305949, 0.0113314447592068, 0.9192634560906515, 0.937204910292729, 0.9390934844192634, 0.9244570349386213, 0.0084985835694051, 0.009442870632672332, 0.008026440037771483, 0.0084985835694051, 0.0084985835694051, 0.0084985835694051, 0.0084985835694051, 0.0084985835694051, 0.008970727101038715, 0.008970727101038715, 0.008970727101038715, 0.009442870632672332, 0.011803588290840416, 0.011803588290840416, 0.016525023607176583], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GATase_2.gap.json b/pfam_gap_rates/GATase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1935ca2bf7dce2048cd18195b523614d8907decb
--- /dev/null
+++ b/pfam_gap_rates/GATase_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GATase_6.gap.json b/pfam_gap_rates/GATase_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f86d1860d395784c2b5bebf5333a33e5c07fbebf
--- /dev/null
+++ b/pfam_gap_rates/GATase_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GCV_H.gap.json b/pfam_gap_rates/GCV_H.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ae25de3c9d0885a23fd9d10ab9c005607a64495
--- /dev/null
+++ b/pfam_gap_rates/GCV_H.gap.json
@@ -0,0 +1 @@
+{"family": "GCV_H", "n_seqs": 2036, "length": 123, "gap_rates": [0.4130648330058939, 0.13850687622789784, 0.11296660117878192, 0.10461689587426326, 0.09724950884086445, 0.08595284872298625, 0.07809430255402751, 0.07121807465618861, 0.06434184675834971, 0.06483300589390963, 0.06335952848722987, 0.06041257367387033, 0.09430255402750491, 0.061394891944990176, 0.1100196463654224, 0.5260314341846758, 0.0618860510805501, 0.05206286836935167, 0.04862475442043222, 0.04616895874263261, 0.04616895874263261, 0.04567779960707269, 0.04469548133595285, 0.043222003929273084, 0.04223968565815324, 0.0412573673870334, 0.0412573673870334, 0.0412573673870334, 0.03929273084479371, 0.03880157170923379, 0.03781925343811395, 0.03732809430255403, 0.03683693516699411, 0.03831041257367387, 0.03585461689587426, 0.03487229862475442, 0.03241650294695481, 0.03143418467583497, 0.03094302554027505, 0.03094302554027505, 0.03094302554027505, 0.03536345776031434, 0.03143418467583497, 0.029960707269155205, 0.029469548133595286, 0.02848722986247544, 0.028978388998035363, 0.0275049115913556, 0.02504911591355599, 0.02504911591355599, 0.02504911591355599, 0.02455795677799607, 0.02504911591355599, 0.025540275049115914, 0.026522593320235755, 0.026522593320235755, 0.026031434184675836, 0.02455795677799607, 0.02455795677799607, 0.02455795677799607, 0.02455795677799607, 0.01669941060903733, 0.011787819253438114, 0.01031434184675835, 0.009332023575638507, 0.008840864440078585, 0.008840864440078585, 0.008349705304518664, 0.008840864440078585, 0.008840864440078585, 0.008349705304518664, 0.007858546168958742, 0.007858546168958742, 0.008349705304518664, 0.008840864440078585, 0.008840864440078585, 0.009332023575638507, 0.009332023575638507, 0.009332023575638507, 0.011787819253438114, 0.0137524557956778, 0.011787819253438114, 0.012278978388998035, 0.01424361493123772, 0.015717092337917484, 0.01669941060903733, 0.014734774066797643, 0.01669941060903733, 0.018172888015717092, 0.019646365422396856, 0.13899803536345776, 0.018664047151277015, 0.01719056974459725, 0.018664047151277015, 0.018172888015717092, 0.018664047151277015, 0.018664047151277015, 0.021611001964636542, 0.03192534381139489, 0.046660117878192534, 0.9415520628683693, 0.05009823182711198, 0.04567779960707269, 0.10707269155206287, 0.10510805500982318, 0.09233791748526522, 0.08202357563850687, 0.07318271119842829, 0.06925343811394892, 0.8909626719056974, 0.07514734774066797, 0.08398821218074656, 0.08791748526522593, 0.09774066797642436, 0.10412573673870335, 0.11198428290766209, 0.11886051080550099, 0.13113948919449903, 0.14734774066797643, 0.19106090373280943, 0.30795677799607074, 0.48035363457760316, 0.6738703339882122], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GDPD.gap.json b/pfam_gap_rates/GDPD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9106ce6123374e4f12c5448f20455d4b94bf2eb8
--- /dev/null
+++ b/pfam_gap_rates/GDPD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GH97_C.gap.json b/pfam_gap_rates/GH97_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bad979e8bf39ffadea1a82e9472208848124e38
--- /dev/null
+++ b/pfam_gap_rates/GH97_C.gap.json
@@ -0,0 +1 @@
+{"family": "GH97_C", "n_seqs": 446, "length": 104, "gap_rates": [0.15695067264573992, 0.017937219730941704, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.006726457399103139, 0.9170403587443946, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.006726457399103139, 0.004484304932735426, 0.004484304932735426, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.6502242152466368, 0.6300448430493274, 0.002242152466367713, 0.002242152466367713, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04484304932735426, 0.7668161434977578, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002242152466367713, 0.002242152466367713, 0.0, 0.002242152466367713, 0.0, 0.0, 0.0, 0.004484304932735426, 0.12331838565022421, 0.06726457399103139, 0.36995515695067266, 0.06502242152466367, 0.013452914798206279, 0.013452914798206279, 0.011210762331838564, 0.006726457399103139, 0.004484304932735426, 0.004484304932735426, 0.013452914798206279, 0.013452914798206279, 0.011210762331838564, 0.011210762331838564, 0.011210762331838564, 0.053811659192825115, 0.06502242152466367, 0.57847533632287, 0.5919282511210763, 0.38565022421524664, 0.32286995515695066, 0.2937219730941704, 0.2533632286995516, 0.12780269058295965, 0.04708520179372197, 0.03811659192825112, 0.03587443946188341, 0.033632286995515695, 0.033632286995515695, 0.03139013452914798, 0.03139013452914798, 0.033632286995515695, 0.04035874439461883, 0.042600896860986545, 0.03811659192825112, 0.042600896860986545, 0.06726457399103139, 0.042600896860986545, 0.03587443946188341, 0.03587443946188341, 0.03587443946188341, 0.03587443946188341, 0.03811659192825112, 0.03811659192825112, 0.03811659192825112, 0.03811659192825112, 0.03811659192825112, 0.03811659192825112, 0.03811659192825112, 0.04484304932735426, 0.13452914798206278, 0.17488789237668162, 0.8295964125560538], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GRDP-like.gap.json b/pfam_gap_rates/GRDP-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86405f9f856454027b9751902c38989e6b4ae2a1
--- /dev/null
+++ b/pfam_gap_rates/GRDP-like.gap.json
@@ -0,0 +1 @@
+{"family": "GRDP-like", "n_seqs": 413, "length": 165, "gap_rates": [0.784503631961259, 0.7457627118644068, 0.7433414043583535, 0.7433414043583535, 0.7409200968523002, 0.7409200968523002, 0.738498789346247, 0.738498789346247, 0.738498789346247, 0.738498789346247, 0.7360774818401937, 0.7336561743341404, 0.7336561743341404, 0.7288135593220338, 0.7288135593220338, 0.7288135593220338, 0.7288135593220338, 0.7263922518159807, 0.7263922518159807, 0.9007263922518159, 0.7239709443099274, 0.7239709443099274, 0.738498789346247, 0.7288135593220338, 0.7239709443099274, 0.7094430992736077, 0.7094430992736077, 0.7021791767554479, 0.6973365617433414, 0.6973365617433414, 0.6949152542372882, 0.6924939467312349, 0.6876513317191283, 0.6803874092009685, 0.6779661016949152, 0.6731234866828087, 0.6682808716707022, 0.6610169491525424, 0.6513317191283293, 0.6513317191283293, 0.6537530266343826, 0.6513317191283293, 0.648910411622276, 0.6440677966101694, 0.6440677966101694, 0.6513317191283293, 0.6464891041162227, 0.6464891041162227, 0.8208232445520581, 0.7070217917675545, 0.7288135593220338, 0.7191283292978208, 0.711864406779661, 0.711864406779661, 0.8934624697336562, 0.8547215496368039, 0.7263922518159807, 0.6852300242130751, 0.6513317191283293, 0.6319612590799032, 0.5932203389830508, 0.5569007263922519, 0.5351089588377724, 0.5157384987893463, 0.49878934624697335, 0.4745762711864407, 0.3365617433414044, 0.8159806295399515, 0.910411622276029, 0.9297820823244553, 0.9443099273607748, 0.9225181598062954, 0.8595641646489104, 0.8087167070217918, 0.2009685230024213, 0.162227602905569, 0.14527845036319612, 0.14043583535108958, 0.1234866828087167, 0.12106537530266344, 0.11864406779661017, 0.11380145278450363, 0.1089588377723971, 0.1089588377723971, 0.10653753026634383, 0.10411622276029056, 0.10411622276029056, 0.10411622276029056, 0.09927360774818401, 0.09443099273607748, 0.09443099273607748, 0.09685230024213075, 0.09927360774818401, 0.09685230024213075, 0.5641646489104116, 0.6198547215496368, 0.6319612590799032, 0.8837772397094431, 0.8934624697336562, 0.8401937046004843, 0.6271186440677966, 0.6174334140435835, 0.4261501210653753, 0.09443099273607748, 0.09443099273607748, 0.09927360774818401, 0.08232445520581114, 0.07990314769975787, 0.07990314769975787, 0.08232445520581114, 0.29782082324455206, 0.28329297820823246, 0.06537530266343826, 0.06053268765133172, 0.048426150121065374, 0.04600484261501211, 0.03631961259079903, 0.03631961259079903, 0.03631961259079903, 0.026634382566585957, 0.026634382566585957, 0.937046004842615, 0.024213075060532687, 0.024213075060532687, 0.9225181598062954, 0.024213075060532687, 0.024213075060532687, 0.024213075060532687, 0.024213075060532687, 0.024213075060532687, 0.024213075060532687, 0.021791767554479417, 0.026634382566585957, 0.24455205811138014, 0.32929782082324455, 0.423728813559322, 0.5230024213075061, 0.4794188861985472, 0.36561743341404357, 0.2542372881355932, 0.8789346246973365, 0.026634382566585957, 0.026634382566585957, 0.024213075060532687, 0.03389830508474576, 0.031476997578692496, 0.029055690072639227, 0.031476997578692496, 0.031476997578692496, 0.029055690072639227, 0.029055690072639227, 0.031476997578692496, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03631961259079903, 0.03631961259079903, 0.04600484261501211, 0.053268765133171914, 0.05569007263922518, 0.05811138014527845, 0.12832929782082325, 0.4043583535108959, 0.48668280871670705], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GSCFA.gap.json b/pfam_gap_rates/GSCFA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0662263b070f97ca0153e1146a05ddb7c8560d2f
--- /dev/null
+++ b/pfam_gap_rates/GSCFA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GSH_synth_ATP.gap.json b/pfam_gap_rates/GSH_synth_ATP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74c79feb79b249952d8207eec6697844dce5a187
--- /dev/null
+++ b/pfam_gap_rates/GSH_synth_ATP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GTP_EFTU_D2.gap.json b/pfam_gap_rates/GTP_EFTU_D2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f2960aae241349f9983da8c31dad5e48b49969a
--- /dev/null
+++ b/pfam_gap_rates/GTP_EFTU_D2.gap.json
@@ -0,0 +1 @@
+{"family": "GTP_EFTU_D2", "n_seqs": 5000, "length": 79, "gap_rates": [0.1462, 0.0582, 0.0312, 0.0162, 0.0058, 0.0026, 0.0016, 0.0014, 0.0016, 0.0014, 0.0014, 0.0014, 0.0014, 0.0012, 0.001, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.455, 0.4508, 0.5572, 0.0202, 0.0492, 0.081, 0.2964, 0.1632, 0.152, 0.624, 0.8904, 0.9476, 0.895, 0.8718, 0.5934, 0.575, 0.0022, 0.0002, 0.0006, 0.0004, 0.001, 0.0002, 0.0, 0.0002, 0.0002, 0.0222, 0.0018, 0.0066, 0.0006, 0.0004, 0.0004, 0.0004, 0.0006, 0.0006, 0.0008, 0.001, 0.001, 0.0012, 0.0016, 0.0016, 0.0018, 0.0022, 0.0044, 0.0086, 0.0186, 0.0174, 0.0074, 0.0082, 0.0096, 0.5636, 0.3602, 0.0344, 0.015, 0.0166, 0.02, 0.0316, 0.0898, 0.4486], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GXGXG.gap.json b/pfam_gap_rates/GXGXG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98a217d6e797209b1319a98299aca3693a9be5ce
--- /dev/null
+++ b/pfam_gap_rates/GXGXG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GYF.gap.json b/pfam_gap_rates/GYF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..157de9fa47e96e479fe8b3f0db4b202ed572a000
--- /dev/null
+++ b/pfam_gap_rates/GYF.gap.json
@@ -0,0 +1 @@
+{"family": "GYF", "n_seqs": 727, "length": 59, "gap_rates": [0.5447042640990372, 0.11279229711141678, 0.037138927097661624, 0.011004126547455296, 0.011004126547455296, 0.009628610729023384, 0.008253094910591471, 0.008253094910591471, 0.0041265474552957355, 0.8060522696011004, 0.8995873452544704, 0.8363136176066025, 0.781292984869326, 0.001375515818431912, 0.001375515818431912, 0.001375515818431912, 0.001375515818431912, 0.001375515818431912, 0.001375515818431912, 0.001375515818431912, 0.001375515818431912, 0.001375515818431912, 0.001375515818431912, 0.0, 0.0, 0.0, 0.0, 0.05364511691884457, 0.030261348005502064, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009628610729023384, 0.017881705639614855, 0.03576341127922971, 0.03851444291609354, 0.0453920220082531, 0.055020632737276476, 0.0687757909215956, 0.07977991746905089, 0.10453920220082531, 0.1485557083906465, 0.23383768913342504, 0.28060522696011003, 0.7083906464924347, 0.7372764786795049, 0.6932599724896836, 0.9188445667125172, 0.8762035763411279, 0.3892709766162311, 0.40990371389270974, 0.4236588720770289, 0.45392022008253097, 0.49105914718019256, 0.5254470426409904, 0.5818431911966988, 0.7936726272352133], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gaa1.gap.json b/pfam_gap_rates/Gaa1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..722775506e4855ab0ad55fd216ec4479181ee5b2
--- /dev/null
+++ b/pfam_gap_rates/Gaa1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GalKase_gal_bdg.gap.json b/pfam_gap_rates/GalKase_gal_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2877f7ace80c947b62c45d022dd07b58564aca8
--- /dev/null
+++ b/pfam_gap_rates/GalKase_gal_bdg.gap.json
@@ -0,0 +1 @@
+{"family": "GalKase_gal_bdg", "n_seqs": 1433, "length": 52, "gap_rates": [0.9050942079553385, 0.3740404745289602, 0.20655966503838102, 0.20097697138869505, 0.19539427773900908, 0.18911374738311235, 0.1765526866713189, 0.17306350314026517, 0.16468946266573622, 0.1451500348918353, 0.48220516399162594, 0.10816468946266573, 0.9141660851360781, 0.5184926727145848, 0.0642009769713887, 0.046057222609909285, 0.0209351011863224, 0.016050244242847175, 0.011863224005582694, 0.0104675505931612, 0.009769713886950453, 0.009769713886950453, 0.007676203768318213, 0.004884856943475227, 0.0027913468248429866, 0.00209351011863224, 0.0027913468248429866, 0.0013956734124214933, 0.0013956734124214933, 0.0013956734124214933, 0.0013956734124214933, 0.0013956734124214933, 0.00209351011863224, 0.00209351011863224, 0.00209351011863224, 0.00209351011863224, 0.0027913468248429866, 0.0027913468248429866, 0.004884856943475227, 0.004884856943475227, 0.00628053035589672, 0.00837404047452896, 0.009071877180739707, 0.009071877180739707, 0.009769713886950453, 0.013258897418004187, 0.021632937892533146, 0.040474528960223306, 0.08164689462665736, 0.11304954640614097, 0.2030704815073273, 0.7083042568039079], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gar1.gap.json b/pfam_gap_rates/Gar1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3886e0082ff745890efa7b9b78630a03efe1df0d
--- /dev/null
+++ b/pfam_gap_rates/Gar1.gap.json
@@ -0,0 +1 @@
+{"family": "Gar1", "n_seqs": 708, "length": 155, "gap_rates": [0.9265536723163842, 0.8870056497175142, 0.7754237288135594, 0.7217514124293786, 0.6638418079096046, 0.594632768361582, 0.632768361581921, 0.559322033898305, 0.4279661016949153, 0.3644067796610169, 0.3050847457627119, 0.2754237288135593, 0.2570621468926554, 0.24293785310734464, 0.2401129943502825, 0.2132768361581921, 0.2344632768361582, 0.192090395480226, 0.1751412429378531, 0.14124293785310735, 0.11581920903954802, 0.1059322033898305, 0.1016949152542373, 0.10028248587570622, 0.09887005649717515, 0.096045197740113, 0.09463276836158192, 0.09322033898305085, 0.09322033898305085, 0.09180790960451977, 0.08757062146892655, 0.08333333333333333, 0.0748587570621469, 0.0692090395480226, 0.0692090395480226, 0.0692090395480226, 0.0692090395480226, 0.0692090395480226, 0.3347457627118644, 0.3502824858757062, 0.519774011299435, 0.519774011299435, 0.4406779661016949, 0.07203389830508475, 0.05649717514124294, 0.052259887005649715, 0.052259887005649715, 0.05084745762711865, 0.052259887005649715, 0.05084745762711865, 0.05084745762711865, 0.046610169491525424, 0.05084745762711865, 0.0480225988700565, 0.9152542372881356, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.04943502824858757, 0.043785310734463276, 0.0423728813559322, 0.04096045197740113, 0.03531073446327684, 0.031073446327683617, 0.031073446327683617, 0.03248587570621469, 0.031073446327683617, 0.031073446327683617, 0.031073446327683617, 0.031073446327683617, 0.029661016949152543, 0.03248587570621469, 0.03248587570621469, 0.038135593220338986, 0.03954802259887006, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.043785310734463276, 0.04519774011299435, 0.5847457627118644, 0.5677966101694916, 0.08757062146892655, 0.08050847457627118, 0.07203389830508475, 0.07627118644067797, 0.09463276836158192, 0.21468926553672316, 0.12994350282485875, 0.09463276836158192, 0.08192090395480225, 0.08192090395480225, 0.07768361581920905, 0.08050847457627118, 0.08333333333333333, 0.08898305084745763, 0.09180790960451977, 0.09887005649717515, 0.1016949152542373, 0.10310734463276836, 0.11016949152542373, 0.5635593220338984, 0.4872881355932203, 0.4279661016949153, 0.4265536723163842, 0.1384180790960452, 0.1370056497175141, 0.1370056497175141, 0.13983050847457626, 0.14689265536723164, 0.5, 0.5211864406779662, 0.5112994350282486, 0.5056497175141242, 0.5042372881355932, 0.5084745762711864, 0.5112994350282486, 0.559322033898305, 0.5155367231638418, 0.518361581920904, 0.4067796610169492, 0.4096045197740113, 0.4364406779661017, 0.4745762711864407, 0.5240112994350282, 0.5437853107344632, 0.5790960451977402, 0.577683615819209, 0.5720338983050848, 0.5734463276836158, 0.5734463276836158, 0.5861581920903954, 0.6299435028248588, 0.596045197740113, 0.597457627118644, 0.5861581920903954, 0.5790960451977402, 0.577683615819209, 0.5805084745762712, 0.5833333333333334, 0.5833333333333334, 0.5861581920903954, 0.5861581920903954, 0.5861581920903954, 0.5861581920903954, 0.5903954802259888, 0.5889830508474576, 0.5918079096045198, 0.5988700564971752, 0.6031073446327684, 0.6101694915254238, 0.6129943502824858, 0.6483050847457628, 0.7372881355932204], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GatB_Yqey.gap.json b/pfam_gap_rates/GatB_Yqey.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c84b9476001d852915a26e1e828ebed4d44783d
--- /dev/null
+++ b/pfam_gap_rates/GatB_Yqey.gap.json
@@ -0,0 +1 @@
+{"family": "GatB_Yqey", "n_seqs": 2305, "length": 153, "gap_rates": [0.5080260303687636, 0.27635574837310195, 0.23253796095444684, 0.22212581344902385, 0.20086767895878524, 0.19088937093275488, 0.1843817787418655, 0.18394793926247288, 0.17310195227765726, 0.17830802603036877, 0.9327548806941431, 0.2229934924078091, 0.1245119305856833, 0.9466377440347071, 0.9201735357917571, 0.09023861171366594, 0.07939262472885032, 0.0772234273318872, 0.0737527114967462, 0.07245119305856833, 0.07288503253796096, 0.07114967462039046, 0.06898047722342733, 0.0685466377440347, 0.0668112798264642, 0.06724511930585683, 0.06637744034707159, 0.06724511930585683, 0.06811279826464209, 0.07288503253796096, 0.06984815618221259, 0.06898047722342733, 0.06811279826464209, 0.06637744034707159, 0.08069414316702819, 0.08373101952277658, 0.07114967462039046, 0.06637744034707159, 0.06464208242950109, 0.06464208242950109, 0.13449023861171366, 0.11149674620390455, 0.05770065075921909, 0.053796095444685464, 0.049023861171366596, 0.0455531453362256, 0.0455531453362256, 0.0438177874186551, 0.04295010845986985, 0.04338394793926247, 0.04295010845986985, 0.04251626898047722, 0.040347071583514096, 0.04121475054229935, 0.041648590021691974, 0.040347071583514096, 0.040347071583514096, 0.039045553145336226, 0.03774403470715835, 0.03644251626898048, 0.0368763557483731, 0.0368763557483731, 0.03774403470715835, 0.03600867678958785, 0.0351409978308026, 0.03470715835140998, 0.03470715835140998, 0.03470715835140998, 0.0351409978308026, 0.03470715835140998, 0.03383947939262473, 0.03383947939262473, 0.03383947939262473, 0.06420824295010846, 0.03600867678958785, 0.8095444685466378, 0.0316702819956616, 0.030802603036876357, 0.029934924078091105, 0.026898047722342732, 0.026898047722342732, 0.025596529284164858, 0.025596529284164858, 0.026898047722342732, 0.026464208242950107, 0.025596529284164858, 0.025162689804772233, 0.0316702819956616, 0.03817787418655098, 0.03036876355748373, 0.022559652928416486, 0.016919739696312365, 0.028199566160520606, 0.021691973969631236, 0.08112798264642082, 0.015184381778741865, 0.014316702819956615, 0.011279826464208243, 0.011279826464208243, 0.010845986984815618, 0.011279826464208243, 0.011279826464208243, 0.010412147505422993, 0.009978308026030369, 0.009544468546637744, 0.009544468546637744, 0.009544468546637744, 0.009978308026030369, 0.009978308026030369, 0.04295010845986985, 0.04338394793926247, 0.0420824295010846, 0.01822125813449024, 0.01735357917570499, 0.01648590021691974, 0.015184381778741865, 0.015184381778741865, 0.01475054229934924, 0.01475054229934924, 0.014316702819956615, 0.0685466377440347, 0.9379609544468547, 0.025596529284164858, 0.016919739696312365, 0.01735357917570499, 0.01822125813449024, 0.01822125813449024, 0.01822125813449024, 0.018655097613882864, 0.01908893709327549, 0.01908893709327549, 0.01908893709327549, 0.019522776572668113, 0.019522776572668113, 0.020390455531453362, 0.02386117136659436, 0.024295010845986984, 0.021691973969631236, 0.028199566160520606, 0.025162689804772233, 0.023427331887201735, 0.02386117136659436, 0.02472885032537961, 0.025162689804772233, 0.025162689804772233, 0.026030368763557483, 0.026898047722342732, 0.02776572668112798, 0.02863340563991323, 0.03470715835140998, 0.05596529284164859, 0.11366594360086768, 0.19392624728850325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gb3_synth.gap.json b/pfam_gap_rates/Gb3_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a6a513f62e348164de06143314514bf39601b61
--- /dev/null
+++ b/pfam_gap_rates/Gb3_synth.gap.json
@@ -0,0 +1 @@
+{"family": "Gb3_synth", "n_seqs": 241, "length": 149, "gap_rates": [0.7842323651452282, 0.34024896265560167, 0.23651452282157676, 0.15767634854771784, 0.11203319502074689, 0.11203319502074689, 0.11203319502074689, 0.11203319502074689, 0.11203319502074689, 0.1078838174273859, 0.1078838174273859, 0.0995850622406639, 0.0995850622406639, 0.1078838174273859, 0.1078838174273859, 0.11203319502074689, 0.11203319502074689, 0.08298755186721991, 0.07883817427385892, 0.07883817427385892, 0.07468879668049792, 0.07053941908713693, 0.07053941908713693, 0.06639004149377593, 0.058091286307053944, 0.058091286307053944, 0.05394190871369295, 0.058091286307053944, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.06224066390041494, 0.06224066390041494, 0.44813278008298757, 0.45643153526970953, 0.43983402489626555, 0.47717842323651455, 0.4730290456431535, 0.45228215767634855, 0.14107883817427386, 0.14522821576763487, 0.16597510373443983, 0.2821576763485477, 0.3278008298755187, 0.8713692946058091, 0.7302904564315352, 0.26141078838174275, 0.18672199170124482, 0.12448132780082988, 0.08713692946058091, 0.08298755186721991, 0.0954356846473029, 0.9377593360995851, 0.07468879668049792, 0.06224066390041494, 0.05394190871369295, 0.04979253112033195, 0.04564315352697095, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.04149377593360996, 0.04979253112033195, 0.05394190871369295, 0.03319502074688797, 0.03319502074688797, 0.03734439834024896, 0.03734439834024896, 0.8132780082987552, 0.8174273858921162, 0.8423236514522822, 0.9004149377593361, 0.8838174273858921, 0.8215767634854771, 0.8132780082987552, 0.8008298755186722, 0.07053941908713693, 0.14937759336099585, 0.2157676348547718, 0.18672199170124482, 0.1950207468879668, 0.17842323651452283, 0.17012448132780084, 0.21161825726141079, 0.6721991701244814, 0.7178423236514523, 0.7468879668049793, 0.8008298755186722, 0.7717842323651453, 0.7344398340248963, 0.6887966804979253, 0.6597510373443983, 0.17427385892116182, 0.17427385892116182, 0.04979253112033195, 0.04564315352697095, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.04979253112033195, 0.8547717842323651, 0.4854771784232365, 0.4854771784232365, 0.1037344398340249, 0.07468879668049792, 0.07468879668049792, 0.07468879668049792, 0.07468879668049792, 0.08713692946058091, 0.0954356846473029, 0.1037344398340249, 0.0995850622406639, 0.0995850622406639, 0.1037344398340249, 0.11203319502074689, 0.12033195020746888, 0.12033195020746888, 0.13278008298755187, 0.13692946058091288, 0.14937759336099585, 0.15767634854771784, 0.15767634854771784, 0.15767634854771784, 0.17842323651452283, 0.1825726141078838, 0.24066390041493776, 0.3070539419087137, 0.6639004149377593], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GcrA.gap.json b/pfam_gap_rates/GcrA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..660ebb8822e85cae1c64b05157e32773f7eee8b5
--- /dev/null
+++ b/pfam_gap_rates/GcrA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ge1_WD40.gap.json b/pfam_gap_rates/Ge1_WD40.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f63e186c13853bcad446416542c51a1b7bdf63b
--- /dev/null
+++ b/pfam_gap_rates/Ge1_WD40.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Gln-synt_N.gap.json b/pfam_gap_rates/Gln-synt_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12d80467a637cb8fc032383f078d991cc5d5a22e
--- /dev/null
+++ b/pfam_gap_rates/Gln-synt_N.gap.json
@@ -0,0 +1 @@
+{"family": "Gln-synt_N", "n_seqs": 2543, "length": 90, "gap_rates": [0.4769956744003146, 0.2438065277231616, 0.21313409359024774, 0.15296893432953204, 0.07038930397168698, 0.04011010617381046, 0.023594180102241447, 0.022414471097129376, 0.020448289421942586, 0.020448289421942586, 0.020448289421942586, 0.020841525756979944, 0.02005505308690523, 0.019268580416830515, 0.0369642154935116, 0.07510813999213527, 0.05859221392056626, 0.019268580416830515, 0.014549744396382226, 0.01101061738104601, 0.01061738104600865, 0.01061738104600865, 0.04876130554463232, 0.013370035391270154, 0.012583562721195438, 0.011403853716083366, 0.8832088084939048, 0.9048368069209595, 0.8733779001179709, 0.41525756979944944, 0.9469130947699568, 0.02320094376720409, 0.019268580416830515, 0.009830908375933936, 0.005898545025560362, 0.007078254030672434, 0.005112072355485647, 0.003539127015336217, 0.0011797090051120724, 0.7793944160440425, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00039323633503735744, 0.00039323633503735744, 0.23436885568226504, 0.0011797090051120724, 0.0011797090051120724, 0.0007864726700747149, 0.00039323633503735744, 0.0, 0.00039323633503735744, 0.00039323633503735744, 0.0007864726700747149, 0.00039323633503735744, 0.00039323633503735744, 0.00039323633503735744, 0.00039323633503735744, 0.00039323633503735744, 0.00039323633503735744, 0.0007864726700747149, 0.22060558395595753, 0.22021234762092018, 0.0023594180102241447, 0.0027526543452615023, 0.0027526543452615023, 0.0031458906802988595, 0.0023594180102241447, 0.0023594180102241447, 0.0027526543452615023, 0.003932363350373574, 0.005112072355485647, 0.013763271726307511, 0.026740070782540308, 0.9123082972866693, 0.6508061344868266, 0.624852536374361, 0.01219032638615808, 0.006685017695635077, 0.006685017695635077, 0.006685017695635077, 0.007471490365709791, 0.009044435705859222, 0.009830908375933936, 0.014549744396382226, 0.031458906802988594, 0.09005112072355485, 0.3417223751474636], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glt_symporter.gap.json b/pfam_gap_rates/Glt_symporter.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0f6b9f4679390ac27980932c9ba1dbf422b3f96
--- /dev/null
+++ b/pfam_gap_rates/Glt_symporter.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glu_cyclase_2.gap.json b/pfam_gap_rates/Glu_cyclase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..475319fb39fad94c3bddd51c7fdbec864eeac1b5
--- /dev/null
+++ b/pfam_gap_rates/Glu_cyclase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Glu_cyclase_2", "n_seqs": 371, "length": 269, "gap_rates": [0.9353099730458221, 0.921832884097035, 0.9056603773584906, 0.894878706199461, 0.8814016172506739, 0.8679245283018868, 0.8544474393530997, 0.8355795148247979, 0.8221024258760108, 0.7951482479784366, 0.7735849056603774, 0.7439353099730458, 0.7277628032345014, 0.7169811320754716, 0.7574123989218329, 0.6226415094339622, 0.8247978436657682, 0.4366576819407008, 0.3692722371967655, 0.30727762803234504, 0.2884097035040431, 0.2668463611859838, 0.24797843665768193, 0.23180592991913745, 0.215633423180593, 0.21024258760107817, 0.20754716981132076, 0.19137466307277629, 0.18867924528301888, 0.18059299191374664, 0.16711590296495957, 0.16172506738544473, 0.16172506738544473, 0.16172506738544473, 0.15633423180592992, 0.14555256064690028, 0.1347708894878706, 0.1293800539083558, 0.12398921832884097, 0.12398921832884097, 0.12398921832884097, 0.12129380053908356, 0.11590296495956873, 0.11320754716981132, 0.1105121293800539, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Gly-zipper_Omp.gap.json b/pfam_gap_rates/Gly-zipper_Omp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a7f19867d4e7fe50292fd1782d6ac9846f5b14a
--- /dev/null
+++ b/pfam_gap_rates/Gly-zipper_Omp.gap.json
@@ -0,0 +1 @@
+{"family": "Gly-zipper_Omp", "n_seqs": 573, "length": 51, "gap_rates": [0.6212914485165794, 0.08726003490401396, 0.04712041884816754, 0.02617801047120419, 0.015706806282722512, 0.013961605584642234, 0.010471204188481676, 0.010471204188481676, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.010471204188481676, 0.0034904013961605585, 0.005235602094240838, 0.010471204188481676, 0.0034904013961605585, 0.008726003490401396, 0.7068062827225131, 0.9092495636998255, 0.774869109947644, 0.5898778359511344, 0.04537521815008726, 0.11169284467713787, 0.9476439790575916, 0.055846422338568937, 0.0017452006980802793, 0.0017452006980802793, 0.0017452006980802793, 0.0, 0.0, 0.0, 0.0, 0.0034904013961605585, 0.0017452006980802793, 0.0034904013961605585, 0.0034904013961605585, 0.0034904013961605585, 0.005235602094240838, 0.0034904013961605585, 0.0034904013961605585, 0.008726003490401396, 0.02268760907504363, 0.03315881326352531, 0.04537521815008726, 0.06806282722513089, 0.11343804537521815, 0.16753926701570682, 0.2286212914485166, 0.34205933682373474, 0.6858638743455497], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gly_transf_sug.gap.json b/pfam_gap_rates/Gly_transf_sug.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0006951ea80c5eb7aa5c44fb31039e3cd223f058
--- /dev/null
+++ b/pfam_gap_rates/Gly_transf_sug.gap.json
@@ -0,0 +1 @@
+{"family": "Gly_transf_sug", "n_seqs": 1404, "length": 130, "gap_rates": [0.8547008547008547, 0.7229344729344729, 0.6232193732193733, 0.5676638176638177, 0.5106837606837606, 0.4757834757834758, 0.43660968660968663, 0.4024216524216524, 0.38105413105413105, 0.3554131054131054, 0.34615384615384615, 0.34116809116809116, 0.3368945868945869, 0.33262108262108264, 0.32763532763532766, 0.32549857549857547, 0.3190883190883191, 0.3076923076923077, 0.3076923076923077, 0.30484330484330485, 0.3041310541310541, 0.3027065527065527, 0.3005698005698006, 0.2984330484330484, 0.29985754985754987, 0.30484330484330485, 0.3603988603988604, 0.3433048433048433, 0.8126780626780626, 0.8133903133903134, 0.8190883190883191, 0.8205128205128205, 0.8212250712250713, 0.8283475783475783, 0.8582621082621082, 0.8682336182336182, 0.9273504273504274, 0.9394586894586895, 0.9195156695156695, 0.8625356125356125, 0.8518518518518519, 0.8254985754985755, 0.8212250712250713, 0.8198005698005698, 0.8162393162393162, 0.8133903133903134, 0.811965811965812, 0.7841880341880342, 0.7678062678062678, 0.7528490028490028, 0.7236467236467237, 0.6673789173789174, 0.5762108262108262, 0.5605413105413105, 0.49572649572649574, 0.29273504273504275, 0.26638176638176636, 0.23433048433048434, 0.21866096866096865, 0.2150997150997151, 0.20868945868945868, 0.22792022792022792, 0.8803418803418803, 0.2094017094017094, 0.20085470085470086, 0.7913105413105413, 0.9123931623931624, 0.9273504273504274, 0.8034188034188035, 0.7443019943019943, 0.2443019943019943, 0.22435897435897437, 0.2037037037037037, 0.2037037037037037, 0.16666666666666666, 0.1581196581196581, 0.1103988603988604, 0.7905982905982906, 0.8532763532763533, 0.8853276353276354, 0.8689458689458689, 0.8148148148148148, 0.7257834757834758, 0.09116809116809117, 0.07977207977207977, 0.10612535612535613, 0.06552706552706553, 0.10541310541310542, 0.05911680911680912, 0.08618233618233619, 0.030626780626780627, 0.0035612535612535613, 0.002849002849002849, 0.002849002849002849, 0.002849002849002849, 0.002849002849002849, 0.0035612535612535613, 0.004273504273504274, 0.0035612535612535613, 0.0035612535612535613, 0.0035612535612535613, 0.0014245014245014246, 0.004273504273504274, 0.004985754985754986, 0.004985754985754986, 0.005698005698005698, 0.005698005698005698, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.007834757834757835, 0.008547008547008548, 0.011396011396011397, 0.017094017094017096, 0.03347578347578348, 0.05128205128205128, 0.06267806267806268, 0.07478632478632478, 0.8903133903133903, 0.9031339031339032, 0.8682336182336182, 0.7977207977207977, 0.21225071225071226, 0.2606837606837607, 0.31196581196581197, 0.3896011396011396, 0.5548433048433048, 0.6680911680911681, 0.7770655270655271, 0.9351851851851852], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydr_116N.gap.json b/pfam_gap_rates/Glyco_hydr_116N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f46c42af75e1626bcbc1e2f4021167c28d26642c
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydr_116N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_115.gap.json b/pfam_gap_rates/Glyco_hydro_115.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe74a95ae549bc4005cea64a8db4f7172b1bc28c
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_115.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_46.gap.json b/pfam_gap_rates/Glyco_hydro_46.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6c12e8768059bd738a3ea41d7725f4336170265
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_46.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_4C.gap.json b/pfam_gap_rates/Glyco_hydro_4C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93627ffaca10e77aeb3b844879284d9980ae0039
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_4C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_62.gap.json b/pfam_gap_rates/Glyco_hydro_62.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03101ca76bfcb3fa37ef1621aaf9592ff6500dd5
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_62.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_81.gap.json b/pfam_gap_rates/Glyco_hydro_81.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ade16da48c36333c9137de12f02079a8684bbd5e
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_81.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_tran_WbsX.gap.json b/pfam_gap_rates/Glyco_tran_WbsX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3edd9799e0745b6521d3e816d576746870bd8233
--- /dev/null
+++ b/pfam_gap_rates/Glyco_tran_WbsX.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_17.gap.json b/pfam_gap_rates/Glyco_transf_17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9d796b6aa0bda9e2bb4bf215be884b9d257b70e
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_17.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_22.gap.json b/pfam_gap_rates/Glyco_transf_22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d4f8618e7c5e133c9286838fac6f92de3889603
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_22.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_6.gap.json b/pfam_gap_rates/Glyco_transf_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb53035e68344c9b96663034446a2aeb3ffa24db
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glycos_transf_2.gap.json b/pfam_gap_rates/Glycos_transf_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..239323646e4fce1d96aa769845f5fc8b9435cb01
--- /dev/null
+++ b/pfam_gap_rates/Glycos_transf_2.gap.json
@@ -0,0 +1 @@
+{"family": "Glycos_transf_2", "n_seqs": 5000, "length": 194, "gap_rates": [0.3124, 0.1274, 0.0888, 0.069, 0.0646, 0.0578, 0.0546, 0.052, 0.0502, 0.8902, 0.0572, 0.0472, 0.0448, 0.0428, 0.0402, 0.0376, 0.0366, 0.0334, 0.0328, 0.053, 0.035, 0.0342, 0.0318, 0.036, 0.8294, 0.9224, 0.7142, 0.605, 0.2296, 0.1406, 0.1178, 0.0474, 0.0222, 0.0206, 0.0194, 0.019, 0.0186, 0.0186, 0.019, 0.019, 0.0184, 0.0188, 0.9072, 0.0644, 0.0492, 0.03, 0.0272, 0.0254, 0.025, 0.0224, 0.022, 0.0218, 0.0228, 0.0252, 0.2748, 0.3766, 0.8736, 0.9484, 0.923, 0.7836, 0.4092, 0.2756, 0.202, 0.0456, 0.0352, 0.02, 0.0188, 0.0178, 0.0166, 0.0166, 0.0176, 0.1398, 0.029, 0.1446, 0.9134, 0.0234, 0.0172, 0.0154, 0.0158, 0.0148, 0.0154, 0.0152, 0.0164, 0.016, 0.0156, 0.0152, 0.0152, 0.0148, 0.015, 0.0152, 0.0152, 0.8294, 0.8596, 0.8134, 0.0154, 0.0156, 0.0162, 0.0162, 0.0158, 0.016, 0.017, 0.0186, 0.0178, 0.0196, 0.0206, 0.0218, 0.023, 0.0298, 0.9374, 0.0338, 0.0318, 0.0344, 0.0364, 0.0388, 0.0426, 0.045, 0.0472, 0.0514, 0.0546, 0.0596, 0.3086, 0.122, 0.1034, 0.1956, 0.1666, 0.134, 0.135, 0.144, 0.1574, 0.1706, 0.1822, 0.1914, 0.206, 0.218, 0.2292, 0.2416, 0.2578, 0.2704, 0.2874, 0.2986, 0.3092, 0.3278, 0.361, 0.4664, 0.5338, 0.7012, 0.8342, 0.868, 0.8952, 0.9152, 0.9346, 0.9434, 0.9224, 0.9064, 0.8782, 0.8524, 0.8106, 0.7356, 0.686, 0.629, 0.5606, 0.5272, 0.5238, 0.5234, 0.5274, 0.5312, 0.5354, 0.541, 0.5442, 0.549, 0.5534, 0.5592, 0.5656, 0.5698, 0.5744, 0.5774, 0.5814, 0.583, 0.5866, 0.5904, 0.5954, 0.5998, 0.6038, 0.6068, 0.6114, 0.6176, 0.6218, 0.627, 0.6366, 0.6534, 0.6734, 0.7586, 0.8112, 0.8932], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyoxal_oxid_N.gap.json b/pfam_gap_rates/Glyoxal_oxid_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0e67665e71123269cca7729b22457016b01dc5a
--- /dev/null
+++ b/pfam_gap_rates/Glyoxal_oxid_N.gap.json
@@ -0,0 +1 @@
+{"family": "Glyoxal_oxid_N", "n_seqs": 579, "length": 316, "gap_rates": [0.6649395509499136, 0.6614853195164075, 0.6580310880829016, 0.6580310880829016, 0.6580310880829016, 0.6563039723661486, 0.6563039723661486, 0.6528497409326425, 0.6511226252158895, 0.6511226252158895, 0.6511226252158895, 0.6511226252158895, 0.6511226252158895, 0.6511226252158895, 0.6511226252158895, 0.6511226252158895, 0.6511226252158895, 0.6511226252158895, 0.6563039723661486, 0.6580310880829016, 0.6493955094991365, 0.6493955094991365, 0.6493955094991365, 0.6493955094991365, 0.6511226252158895, 0.6511226252158895, 0.6511226252158895, 0.6597582037996546, 0.6563039723661486, 0.6528497409326425, 0.6614853195164075, 0.6683937823834197, 0.687392055267703, 0.6856649395509499, 0.689119170984456, 0.6735751295336787, 0.6735751295336787, 0.6597582037996546, 0.6424870466321243, 0.6338514680483592, 0.5889464594127807, 0.5734024179620034, 0.5509499136442142, 0.5215889464594128, 0.4265975820379965, 0.29015544041450775, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Golgin_A5.gap.json b/pfam_gap_rates/Golgin_A5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e96aa895e8b8a954f71401a02afc7db022421ace
--- /dev/null
+++ b/pfam_gap_rates/Golgin_A5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Got1.gap.json b/pfam_gap_rates/Got1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc9677591ff5b3d90b7b826a10f1df03d9f31ba5
--- /dev/null
+++ b/pfam_gap_rates/Got1.gap.json
@@ -0,0 +1 @@
+{"family": "Got1", "n_seqs": 986, "length": 119, "gap_rates": [0.8417849898580122, 0.6815415821501014, 0.6308316430020284, 0.5730223123732252, 0.30425963488843816, 0.25557809330628806, 0.22920892494929007, 0.12170385395537525, 0.7403651115618661, 0.7778904665314401, 0.7758620689655172, 0.6632860040567952, 0.1105476673427992, 0.10446247464503043, 0.1105476673427992, 0.1075050709939148, 0.09837728194726167, 0.09330628803245436, 0.0922920892494929, 0.09330628803245436, 0.13691683569979715, 0.8995943204868154, 0.9371196754563894, 0.8032454361054767, 0.42190669371196754, 0.4127789046653144, 0.4077079107505071, 0.4066937119675456, 0.40365111561866124, 0.06795131845841786, 0.06490872210953347, 0.06288032454361055, 0.060851926977687626, 0.060851926977687626, 0.05070993914807302, 0.04969574036511156, 0.0436105476673428, 0.03955375253549696, 0.04056795131845842, 0.03955375253549696, 0.037525354969574036, 0.036511156186612576, 0.033468559837728194, 0.03144016227180527, 0.029411764705882353, 0.029411764705882353, 0.028397565922920892, 0.02636916835699797, 0.02636916835699797, 0.02636916835699797, 0.02738336713995943, 0.028397565922920892, 0.028397565922920892, 0.028397565922920892, 0.028397565922920892, 0.03955375253549696, 0.02636916835699797, 0.02738336713995943, 0.02636916835699797, 0.028397565922920892, 0.034482758620689655, 0.030425963488843813, 0.03144016227180527, 0.02332657200811359, 0.02332657200811359, 0.02332657200811359, 0.02332657200811359, 0.02231237322515213, 0.02028397565922921, 0.02231237322515213, 0.02231237322515213, 0.02636916835699797, 0.02636916835699797, 0.02636916835699797, 0.02636916835699797, 0.028397565922920892, 0.02738336713995943, 0.028397565922920892, 0.3803245436105477, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.4066937119675456, 0.4056795131845842, 0.40162271805273836, 0.40060851926977686, 0.40466531440162273, 0.40365111561866124, 0.40466531440162273, 0.056795131845841784, 0.05476673427991886, 0.05476673427991886, 0.05476673427991886, 0.05476673427991886, 0.055780933062880324, 0.056795131845841784, 0.055780933062880324, 0.057809330628803245, 0.058823529411764705, 0.058823529411764705, 0.06288032454361055, 0.06389452332657201, 0.0720081135902637, 0.07505070993914807, 0.0872210953346856, 0.08924949290060852, 0.09432048681541583, 0.09634888438133875, 0.09939148073022312, 0.10040567951318459, 0.10243407707910751, 0.10547667342799188, 0.11561866125760649, 0.1206896551724138, 0.12474645030425964, 0.1359026369168357, 0.15720081135902636, 0.24543610547667344, 0.4340770791075051], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gp49.gap.json b/pfam_gap_rates/Gp49.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9de136bc159c111b41bda252964d3fe833c6076
--- /dev/null
+++ b/pfam_gap_rates/Gp49.gap.json
@@ -0,0 +1 @@
+{"family": "Gp49", "n_seqs": 958, "length": 102, "gap_rates": [0.5323590814196242, 0.24217118997912318, 0.2035490605427975, 0.17954070981210857, 0.16910229645093947, 0.1544885177453027, 0.8622129436325678, 0.13778705636743216, 0.1325678496868476, 0.12108559498956159, 0.10438413361169102, 0.09290187891440502, 0.08663883089770355, 0.07933194154488518, 0.07724425887265135, 0.06993736951983298, 0.06889352818371608, 0.06889352818371608, 0.06889352818371608, 0.06576200417536535, 0.06471816283924843, 0.06263048016701461, 0.07620041753653445, 0.061586638830897704, 0.061586638830897704, 0.0918580375782881, 0.8392484342379958, 0.2640918580375783, 0.27139874739039666, 0.22025052192066805, 0.2139874739039666, 0.12108559498956159, 0.0511482254697286, 0.0511482254697286, 0.04488517745302714, 0.0407098121085595, 0.037578288100208766, 0.029227557411273485, 0.031315240083507306, 0.8048016701461378, 0.8820459290187892, 0.8695198329853863, 0.7484342379958246, 0.10542797494780794, 0.016701461377870562, 0.013569937369519834, 0.011482254697286013, 0.011482254697286013, 0.011482254697286013, 0.011482254697286013, 0.011482254697286013, 0.12421711899791232, 0.11586638830897704, 0.09394572025052192, 0.09707724425887265, 0.9457202505219207, 0.2985386221294363, 0.022964509394572025, 0.017745302713987474, 0.009394572025052192, 0.011482254697286013, 0.017745302713987474, 0.018789144050104383, 0.017745302713987474, 0.015657620041753653, 0.016701461377870562, 0.018789144050104383, 0.014613778705636743, 0.012526096033402923, 0.12630480167014613, 0.009394572025052192, 0.009394572025052192, 0.009394572025052192, 0.010438413361169102, 0.010438413361169102, 0.010438413361169102, 0.010438413361169102, 0.010438413361169102, 0.011482254697286013, 0.011482254697286013, 0.010438413361169102, 0.9206680584551148, 0.8747390396659708, 0.1430062630480167, 0.9290187891440501, 0.9384133611691023, 0.9112734864300627, 0.18580375782881003, 0.20981210855949894, 0.0918580375782881, 0.05323590814196242, 0.05219206680584551, 0.05845511482254697, 0.061586638830897704, 0.06889352818371608, 0.07620041753653445, 0.08872651356993737, 0.11377870563674322, 0.1617954070981211, 0.2828810020876827, 0.3695198329853862, 0.7066805845511482], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gp_dh_N.gap.json b/pfam_gap_rates/Gp_dh_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..314153d69aa9f07af0dc71df76ed59f64f2a871e
--- /dev/null
+++ b/pfam_gap_rates/Gp_dh_N.gap.json
@@ -0,0 +1 @@
+{"family": "Gp_dh_N", "n_seqs": 4034, "length": 113, "gap_rates": [0.40183440753594446, 0.06370847793753098, 0.0495785820525533, 0.04238968765493307, 0.041398116013882005, 0.04090233019335647, 0.040406544372830935, 0.035448686167575606, 0.03520079325731284, 0.03470500743678731, 0.03445711452652454, 0.03445711452652454, 0.034209221616261776, 0.032969757064947945, 0.030986613782845812, 0.029995042141794746, 0.02875557759048091, 0.02900347050074368, 0.02825979176995538, 0.028507684680218144, 0.6851760039662865, 0.9025780862667327, 0.9400099157164105, 0.8264749628160635, 0.6670798215171047, 0.02875557759048091, 0.03594447198810114, 0.05057015369360436, 0.8403569657907783, 0.023549826474962815, 0.022310361923648984, 0.021318790282597918, 0.02107089737233515, 0.020823004462072386, 0.02032721864154685, 0.019335647000495785, 0.01908775409023302, 0.019335647000495785, 0.6945959345562717, 0.02032721864154685, 0.018839861179970253, 0.018839861179970253, 0.01834407535944472, 0.01834407535944472, 0.018591968269707486, 0.013386217154189391, 0.013386217154189391, 0.013386217154189391, 0.011650966782350025, 0.012146752602875557, 0.01264253842340109, 0.012146752602875557, 0.012146752602875557, 0.012394645513138325, 0.01264253842340109, 0.011898859692612791, 0.012890431333663858, 0.011650966782350025, 0.013138324243926624, 0.927863163113535, 0.012394645513138325, 0.014377788795240456, 0.012890431333663858, 0.012146752602875557, 0.011403073872087258, 0.015121467526028755, 0.015369360436291522, 0.8904313336638572, 0.7992067426871592, 0.01611303916707982, 0.02602875557759048, 0.017352503718393655, 0.017352503718393655, 0.017352503718393655, 0.017104610808130888, 0.01760039662865642, 0.01760039662865642, 0.01760039662865642, 0.017352503718393655, 0.01636093207734259, 0.015617253346554288, 0.01636093207734259, 0.017352503718393655, 0.017352503718393655, 0.017104610808130888, 0.017848289538919187, 0.02107089737233515, 0.023797719385225583, 0.01908775409023302, 0.01908775409023302, 0.019335647000495785, 0.019583539910758552, 0.01983143282102132, 0.025037183936539417, 0.07932573128408528, 0.07511155180961825, 0.021318790282597918, 0.02107089737233515, 0.021318790282597918, 0.9496777392166584, 0.9494298463063956, 0.021318790282597918, 0.021318790282597918, 0.021318790282597918, 0.021318790282597918, 0.022062469013386217, 0.02255825483391175, 0.023549826474962815, 0.024293505205751114, 0.027268220128904314, 0.03222607833415964, 0.07362419434804164, 0.8775409023301933], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GutM.gap.json b/pfam_gap_rates/GutM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2bf8842cc4849bf22ee21b9d7fef9c9bd3d3bf20
--- /dev/null
+++ b/pfam_gap_rates/GutM.gap.json
@@ -0,0 +1 @@
+{"family": "GutM", "n_seqs": 115, "length": 117, "gap_rates": [0.9130434782608695, 0.3217391304347826, 0.09565217391304348, 0.06086956521739131, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.7391304347826086, 0.9391304347826087, 0.8608695652173913, 0.7304347826086957, 0.017391304347826087, 0.9478260869565217, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.9478260869565217, 0.017391304347826087, 0.017391304347826087, 0.034782608695652174, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.9478260869565217, 0.06086956521739131, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.9304347826086956, 0.034782608695652174, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.02608695652173913, 0.043478260869565216, 0.043478260869565216, 0.09565217391304348, 0.06956521739130435, 0.08695652173913043, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.2608695652173913, 0.7739130434782608, 0.7217391304347827, 0.24347826086956523, 0.25217391304347825, 0.28695652173913044, 0.3217391304347826, 0.34782608695652173, 0.3652173913043478, 0.3826086956521739, 0.45217391304347826, 0.48695652173913045, 0.5391304347826087, 0.5739130434782609, 0.7304347826086957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/H2TH.gap.json b/pfam_gap_rates/H2TH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..701fb737594b94132dc1ecb5e6285035613a7789
--- /dev/null
+++ b/pfam_gap_rates/H2TH.gap.json
@@ -0,0 +1 @@
+{"family": "H2TH", "n_seqs": 2471, "length": 92, "gap_rates": [0.2395791177660866, 0.12626467017401863, 0.11088628085795224, 0.10400647511129098, 0.09753136382031566, 0.09348441926345609, 0.9445568595710239, 0.10117361392148927, 0.10562525293403481, 0.08174828004856334, 0.06191825171995144, 0.04937272359368677, 0.04087414002428167, 0.03763658437879401, 0.03318494536624848, 0.027114528530959126, 0.025900445163901255, 0.02387697288547147, 0.021853500607041682, 0.021448806151355727, 0.019020639417239985, 0.017806556050182113, 0.019020639417239985, 0.868069607446378, 0.012950222581950627, 0.010926750303520841, 0.010117361392148928, 0.006475111290975314, 0.006475111290975314, 0.004451639012545528, 0.004046944556859571, 0.003237555645487657, 0.0020234722784297854, 0.0020234722784297854, 0.0020234722784297854, 0.0016187778227438284, 0.0016187778227438284, 0.0016187778227438284, 0.0012140833670578712, 0.0008093889113719142, 0.0008093889113719142, 0.0008093889113719142, 0.0008093889113719142, 0.0008093889113719142, 0.0008093889113719142, 0.0008093889113719142, 0.0008093889113719142, 0.0012140833670578712, 0.0012140833670578712, 0.0020234722784297854, 0.0020234722784297854, 0.0020234722784297854, 0.0020234722784297854, 0.0024281667341157424, 0.003237555645487657, 0.003642250101173614, 0.003642250101173614, 0.005261027923917442, 0.007689194658033185, 0.010522055847834885, 0.01578308377175233, 0.020234722784297856, 0.021448806151355727, 0.023067583974099554, 0.036422501011736136, 0.049777418049372725, 0.05544314042897612, 0.05220558478348847, 0.05463375151760421, 0.05584783488466208, 0.056657223796033995, 0.057061918251719954, 0.05787130716309186, 0.060299473897207606, 0.06434641845406718, 0.06960744637798462, 0.07729664103601781, 0.08093889113719142, 0.09105625252934035, 0.10117361392148927, 0.10764872521246459, 0.11574261432618373, 0.12221772561715905, 0.13638203156616754, 0.1489275596924322, 0.19749089437474707, 0.23634156212059895, 0.28935653581545934, 0.3597733711048159, 0.4087414002428167, 0.5346013759611493, 0.6187778227438284], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HAD_2.gap.json b/pfam_gap_rates/HAD_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9d1a76e7a99afa649cf5a8fdf29c64fdadae502
--- /dev/null
+++ b/pfam_gap_rates/HAD_2.gap.json
@@ -0,0 +1 @@
+{"family": "HAD_2", "n_seqs": 5000, "length": 220, "gap_rates": [0.4482, 0.2988, 0.252, 0.2404, 0.2326, 0.232, 0.23, 0.2292, 0.2278, 0.2274, 0.2266, 0.2262, 0.2274, 0.2284, 0.229, 0.229, 0.2256, 0.223, 0.2194, 0.2166, 0.216, 0.216, 0.215, 0.2148, 0.2202, 0.2204, 0.2208, 0.8658, 0.8768, 0.9, 0.9108, 0.9244, 0.9372, 0.9442, 0.9476, 0.9408, 0.9318, 0.9182, 0.9072, 0.8856, 0.8726, 0.8572, 0.243, 0.2546, 0.4616, 0.8546, 0.2598, 0.2368, 0.2298, 0.2236, 0.2196, 0.2182, 0.2166, 0.212, 0.2114, 0.2076, 0.206, 0.2038, 0.2024, 0.2004, 0.1988, 0.2308, 0.2124, 0.1988, 0.1946, 0.1922, 0.1926, 0.1898, 0.188, 0.188, 0.204, 0.2418, 0.2282, 0.3096, 0.2898, 0.2258, 0.5274, 0.6606, 0.7636, 0.8282, 0.863, 0.8822, 0.9076, 0.9268, 0.94, 0.9152, 0.8926, 0.8722, 0.8474, 0.7856, 0.732, 0.5838, 0.4828, 0.1634, 0.1642, 0.1608, 0.1578, 0.1526, 0.2128, 0.147, 0.1378, 0.1306, 0.128, 0.1294, 0.1304, 0.1292, 0.1332, 0.1448, 0.77, 0.8678, 0.6904, 0.4608, 0.1394, 0.0858, 0.072, 0.055, 0.0496, 0.0454, 0.0426, 0.0388, 0.0362, 0.0338, 0.0304, 0.0296, 0.0292, 0.0286, 0.0332, 0.2236, 0.066, 0.048, 0.0308, 0.0318, 0.0362, 0.0354, 0.037, 0.0212, 0.0208, 0.0208, 0.0206, 0.028, 0.0444, 0.0538, 0.0506, 0.0432, 0.038, 0.0404, 0.0346, 0.0288, 0.0242, 0.0224, 0.021, 0.02, 0.019, 0.0512, 0.0814, 0.0454, 0.0268, 0.0272, 0.0184, 0.0198, 0.02, 0.0198, 0.0194, 0.0216, 0.0244, 0.025, 0.0388, 0.024, 0.0272, 0.028, 0.9398, 0.906, 0.066, 0.0948, 0.078, 0.0284, 0.021, 0.0134, 0.0138, 0.0138, 0.0144, 0.0146, 0.0158, 0.0174, 0.0176, 0.0216, 0.9326, 0.9426, 0.909, 0.0244, 0.027, 0.0268, 0.0322, 0.0344, 0.0286, 0.0224, 0.0212, 0.0208, 0.0202, 0.0216, 0.022, 0.0222, 0.0228, 0.8162, 0.0252, 0.0266, 0.0274, 0.03, 0.0328, 0.0328, 0.0358, 0.0376, 0.0448, 0.0492, 0.0626, 0.095, 0.132, 0.1774, 0.3382, 0.618], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HAUS6_N.gap.json b/pfam_gap_rates/HAUS6_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bac04fdbb67ac72741de78155a05a8fb3281f0e3
--- /dev/null
+++ b/pfam_gap_rates/HAUS6_N.gap.json
@@ -0,0 +1 @@
+{"family": "HAUS6_N", "n_seqs": 183, "length": 281, "gap_rates": [0.2896174863387978, 0.2568306010928962, 0.2459016393442623, 0.23497267759562843, 0.22950819672131148, 0.2185792349726776, 0.2185792349726776, 0.2185792349726776, 0.2185792349726776, 0.2185792349726776, 0.2185792349726776, 0.2185792349726776, 0.20765027322404372, 0.20218579234972678, 0.28415300546448086, 0.8797814207650273, 0.9289617486338798, 0.9453551912568307, 0.9234972677595629, 0.5136612021857924, 0.2185792349726776, 0.22404371584699453, 0.20765027322404372, 0.20218579234972678, 0.1912568306010929, 0.18579234972677597, 0.1912568306010929, 0.1912568306010929, 0.18579234972677597, 0.18032786885245902, 0.7814207650273224, 0.1912568306010929, 0.1912568306010929, 0.18032786885245902, 0.15846994535519127, 0.15300546448087432, 0.7759562841530054, 0.15300546448087432, 0.15300546448087432, 0.15300546448087432, 0.6775956284153005, 0.15300546448087432, 0.14754098360655737, 0.14207650273224043, 0.14207650273224043, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HBS1_N.gap.json b/pfam_gap_rates/HBS1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fdb741927353bcba4c218c6ca1ad06edc8e541a
--- /dev/null
+++ b/pfam_gap_rates/HBS1_N.gap.json
@@ -0,0 +1 @@
+{"family": "HBS1_N", "n_seqs": 162, "length": 101, "gap_rates": [0.7901234567901234, 0.6728395061728395, 0.6234567901234568, 0.5, 0.35802469135802467, 0.9259259259259259, 0.8641975308641975, 0.16049382716049382, 0.13580246913580246, 0.1111111111111111, 0.10493827160493827, 0.10493827160493827, 0.11728395061728394, 0.1111111111111111, 0.09259259259259259, 0.1111111111111111, 0.04938271604938271, 0.46296296296296297, 0.5802469135802469, 0.654320987654321, 0.7222222222222222, 0.8395061728395061, 0.8518518518518519, 0.8827160493827161, 0.8950617283950617, 0.9320987654320988, 0.9382716049382716, 0.9444444444444444, 0.9320987654320988, 0.9197530864197531, 0.8950617283950617, 0.8703703703703703, 0.845679012345679, 0.7901234567901234, 0.6975308641975309, 0.6111111111111112, 0.5493827160493827, 0.3950617283950617, 0.043209876543209874, 0.030864197530864196, 0.037037037037037035, 0.043209876543209874, 0.037037037037037035, 0.037037037037037035, 0.024691358024691357, 0.018518518518518517, 0.006172839506172839, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.43209876543209874, 0.41975308641975306, 0.3950617283950617, 0.3888888888888889, 0.3395061728395062, 0.29012345679012347, 0.4074074074074074, 0.20987654320987653, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006172839506172839, 0.006172839506172839, 0.012345679012345678, 0.037037037037037035, 0.06172839506172839, 0.07407407407407407, 0.15432098765432098, 0.22839506172839505, 0.32098765432098764, 0.49382716049382713, 0.7962962962962963], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HD_assoc.gap.json b/pfam_gap_rates/HD_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d71040c6782a4be2b0834cf4942c899e1d14af7
--- /dev/null
+++ b/pfam_gap_rates/HD_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "HD_assoc", "n_seqs": 1352, "length": 115, "gap_rates": [0.6020710059171598, 0.3025147928994083, 0.22263313609467456, 0.1856508875739645, 0.17011834319526628, 0.15088757396449703, 0.13683431952662722, 0.11908284023668639, 0.10576923076923077, 0.09467455621301775, 0.08062130177514792, 0.07026627218934911, 0.0673076923076923, 0.0650887573964497, 0.0643491124260355, 0.05547337278106509, 0.04881656804733728, 0.04807692307692308, 0.047337278106508875, 0.04659763313609468, 0.04659763313609468, 0.04659763313609468, 0.04659763313609468, 0.04659763313609468, 0.04807692307692308, 0.04659763313609468, 0.04659763313609468, 0.04585798816568047, 0.04585798816568047, 0.047337278106508875, 0.04437869822485207, 0.04142011834319527, 0.040680473372781065, 0.040680473372781065, 0.04142011834319527, 0.040680473372781065, 0.040680473372781065, 0.03920118343195266, 0.038461538461538464, 0.036242603550295856, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.03328402366863906, 0.03328402366863906, 0.03254437869822485, 0.7973372781065089, 0.8239644970414202, 0.8542899408284024, 0.900887573964497, 0.9193786982248521, 0.9341715976331361, 0.9460059171597633, 0.9386094674556213, 0.9223372781065089, 0.9149408284023669, 0.8720414201183432, 0.8350591715976331, 0.8099112426035503, 0.7936390532544378, 0.030325443786982247, 0.04955621301775148, 0.04585798816568047, 0.610207100591716, 0.04585798816568047, 0.04142011834319527, 0.036242603550295856, 0.03476331360946745, 0.029585798816568046, 0.027366863905325445, 0.027366863905325445, 0.07692307692307693, 0.0628698224852071, 0.05473372781065089, 0.9304733727810651, 0.9445266272189349, 0.9386094674556213, 0.9252958579881657, 0.09837278106508876, 0.10946745562130178, 0.09763313609467456, 0.14571005917159763, 0.3076923076923077, 0.3890532544378698, 0.757396449704142, 0.8868343195266272, 0.9164201183431953, 0.8631656804733728, 0.5, 0.20340236686390534, 0.02440828402366864, 0.013313609467455622, 0.01257396449704142, 0.011094674556213017, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.010355029585798817, 0.011834319526627219, 0.014053254437869823, 0.029585798816568046, 0.08579881656804733, 0.16420118343195267, 0.5155325443786982], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HEAT_2.gap.json b/pfam_gap_rates/HEAT_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9bc6feaeda8a3891cd35d7cc21fa42b5fc94dbb
--- /dev/null
+++ b/pfam_gap_rates/HEAT_2.gap.json
@@ -0,0 +1 @@
+{"family": "HEAT_2", "n_seqs": 5000, "length": 113, "gap_rates": [0.8602, 0.628, 0.4872, 0.3936, 0.3476, 0.3074, 0.27, 0.2334, 0.7096, 0.1936, 0.1686, 0.1418, 0.1268, 0.1172, 0.1002, 0.0656, 0.0552, 0.0458, 0.0386, 0.0316, 0.029, 0.0262, 0.0228, 0.0214, 0.0204, 0.82, 0.919, 0.936, 0.9462, 0.9396, 0.932, 0.9028, 0.8096, 0.0216, 0.0374, 0.0304, 0.0232, 0.032, 0.895, 0.9394, 0.9488, 0.9294, 0.8902, 0.0316, 0.0082, 0.0048, 0.0024, 0.0024, 0.0022, 0.002, 0.0018, 0.001, 0.0006, 0.7638, 0.0032, 0.005, 0.9466, 0.0014, 0.001, 0.0008, 0.0004, 0.0002, 0.0002, 0.0004, 0.0004, 0.0004, 0.001, 0.0012, 0.0014, 0.0022, 0.0044, 0.0066, 0.0092, 0.9144, 0.9356, 0.93, 0.908, 0.0152, 0.9108, 0.944, 0.8994, 0.0286, 0.909, 0.9438, 0.8884, 0.0398, 0.083, 0.0544, 0.0616, 0.065, 0.069, 0.0712, 0.078, 0.0874, 0.134, 0.1148, 0.1776, 0.22, 0.2334, 0.2326, 0.2554, 0.2722, 0.2996, 0.3436, 0.318, 0.3422, 0.3632, 0.381, 0.4086, 0.4452, 0.4754, 0.5294, 0.8156], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HEAT_EZ.gap.json b/pfam_gap_rates/HEAT_EZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b26d2dc4fc06ffcb849ff4a1cf1b3c0be7e2897
--- /dev/null
+++ b/pfam_gap_rates/HEAT_EZ.gap.json
@@ -0,0 +1 @@
+{"family": "HEAT_EZ", "n_seqs": 1150, "length": 56, "gap_rates": [0.22608695652173913, 0.13478260869565217, 0.07652173913043478, 0.026956521739130435, 0.021739130434782608, 0.01652173913043478, 0.011304347826086957, 0.006956521739130435, 0.00608695652173913, 0.0034782608695652175, 0.0026086956521739132, 0.0052173913043478265, 0.00782608695652174, 0.6634782608695652, 0.006956521739130435, 0.00782608695652174, 0.021739130434782608, 0.009565217391304347, 0.0034782608695652175, 0.0017391304347826088, 0.0008695652173913044, 0.0, 0.0, 0.0, 0.00608695652173913, 0.004347826086956522, 0.004347826086956522, 0.0034782608695652175, 0.008695652173913044, 0.0008695652173913044, 0.0008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.020869565217391306, 0.010434782608695653, 0.009565217391304347, 0.01652173913043478, 0.01565217391304348, 0.0, 0.0017391304347826088, 0.0026086956521739132, 0.0034782608695652175, 0.0034782608695652175, 0.0034782608695652175, 0.0034782608695652175, 0.0034782608695652175, 0.0052173913043478265, 0.010434782608695653, 0.01217391304347826, 0.020869565217391306, 0.029565217391304348, 0.07739130434782608, 0.12347826086956522, 0.4782608695652174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HEAT_PBS.gap.json b/pfam_gap_rates/HEAT_PBS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29c8be87d626cacadf94bd622b952e5ebe53c053
--- /dev/null
+++ b/pfam_gap_rates/HEAT_PBS.gap.json
@@ -0,0 +1 @@
+{"family": "HEAT_PBS", "n_seqs": 367, "length": 29, "gap_rates": [0.4822888283378747, 0.14713896457765668, 0.10899182561307902, 0.0681198910081744, 0.035422343324250684, 0.010899182561307902, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8365122615803815, 0.8010899182561307, 0.01634877384196185, 0.008174386920980926, 0.008174386920980926, 0.008174386920980926, 0.008174386920980926, 0.013623978201634877, 0.01634877384196185, 0.02997275204359673, 0.05722070844686648, 0.11444141689373297, 0.1989100817438692, 0.3188010899182561, 0.6103542234332425], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HGTP_anticodon.gap.json b/pfam_gap_rates/HGTP_anticodon.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a482d32d4a32f206778395c48c7f3fe77d12614
--- /dev/null
+++ b/pfam_gap_rates/HGTP_anticodon.gap.json
@@ -0,0 +1 @@
+{"family": "HGTP_anticodon", "n_seqs": 5000, "length": 97, "gap_rates": [0.3838, 0.2092, 0.1644, 0.1328, 0.1188, 0.1146, 0.108, 0.1024, 0.1002, 0.6444, 0.9086, 0.926, 0.8682, 0.5774, 0.5358, 0.1756, 0.0732, 0.056, 0.046, 0.0374, 0.0304, 0.0256, 0.0202, 0.0154, 0.0146, 0.0118, 0.0108, 0.0102, 0.0094, 0.0152, 0.0168, 0.1218, 0.0308, 0.0292, 0.0082, 0.006, 0.0066, 0.0146, 0.1092, 0.81, 0.0134, 0.0034, 0.0028, 0.0028, 0.003, 0.0028, 0.0022, 0.0018, 0.0018, 0.0014, 0.0016, 0.0008, 0.001, 0.0036, 0.0058, 0.005, 0.0018, 0.0018, 0.0016, 0.0012, 0.0034, 0.0042, 0.0058, 0.0072, 0.0122, 0.0104, 0.0162, 0.0252, 0.0688, 0.028, 0.0182, 0.0156, 0.0138, 0.0138, 0.0144, 0.0164, 0.0198, 0.0206, 0.0304, 0.03, 0.0326, 0.0366, 0.0394, 0.0478, 0.0502, 0.0544, 0.0572, 0.0616, 0.0648, 0.0728, 0.0824, 0.1012, 0.1216, 0.151, 0.1822, 0.3232, 0.5504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HI0933_like.gap.json b/pfam_gap_rates/HI0933_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2ed799d92f43c3c69ab12d110b938cc64efd836
--- /dev/null
+++ b/pfam_gap_rates/HI0933_like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HIGH_NTase1.gap.json b/pfam_gap_rates/HIGH_NTase1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46ed08379bb1b0fba468cca9032444c86d281d9e
--- /dev/null
+++ b/pfam_gap_rates/HIGH_NTase1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HIG_1_N.gap.json b/pfam_gap_rates/HIG_1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..519fd6bc77ec845550571660b8f3d473bb4d33fc
--- /dev/null
+++ b/pfam_gap_rates/HIG_1_N.gap.json
@@ -0,0 +1 @@
+{"family": "HIG_1_N", "n_seqs": 769, "length": 58, "gap_rates": [0.6566970091027308, 0.41092327698309494, 0.33940182054616386, 0.26527958387516254, 0.23927178153446033, 0.20806241872561768, 0.1846553966189857, 0.1755526657997399, 0.1508452535760728, 0.12483745123537061, 0.10923276983094929, 0.0988296488946684, 0.09232769830949285, 0.08452535760728218, 0.0741222366710013, 0.07282184655396619, 0.10923276983094929, 0.10013003901170352, 0.05851755526657997, 0.053315994798439535, 0.05201560468140442, 0.05071521456436931, 0.044213263979193757, 0.0494148244473342, 0.04031209362808843, 0.036410923276983094, 0.7867360208062418, 0.11443433029908973, 0.10013003901170352, 0.013003901170351105, 0.752925877763329, 0.9154746423927178, 0.9232769830949284, 0.8569570871261378, 0.7256176853055917, 0.0039011703511053317, 0.002600780234070221, 0.002600780234070221, 0.002600780234070221, 0.0013003901170351106, 0.0013003901170351106, 0.0013003901170351106, 0.002600780234070221, 0.002600780234070221, 0.006501950585175552, 0.006501950585175552, 0.006501950585175552, 0.007802340702210663, 0.007802340702210663, 0.007802340702210663, 0.009102730819245773, 0.010403120936280884, 0.009102730819245773, 0.014304291287386216, 0.01950585175552666, 0.05981794538361508, 0.20286085825747724, 0.6033810143042913], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HK.gap.json b/pfam_gap_rates/HK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2b8aec7566efea3ae7db17b19a98427a3655792
--- /dev/null
+++ b/pfam_gap_rates/HK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HPTransfase.gap.json b/pfam_gap_rates/HPTransfase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..154b87f4363b9add02249417e6f8a7ce2c4eefb8
--- /dev/null
+++ b/pfam_gap_rates/HPTransfase.gap.json
@@ -0,0 +1 @@
+{"family": "HPTransfase", "n_seqs": 168, "length": 190, "gap_rates": [0.08333333333333333, 0.03571428571428571, 0.02976190476190476, 0.02976190476190476, 0.017857142857142856, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.02976190476190476, 0.023809523809523808, 0.011904761904761904, 0.07142857142857142, 0.05952380952380952, 0.7797619047619048, 0.8154761904761905, 0.75, 0.011904761904761904, 0.017857142857142856, 0.17261904761904762, 0.4583333333333333, 0.44642857142857145, 0.23809523809523808, 0.2261904761904762, 0.1488095238095238, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2916666666666667, 0.041666666666666664, 0.017857142857142856, 0.16666666666666666, 0.06547619047619048, 0.02976190476190476, 0.005952380952380952, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.041666666666666664, 0.011904761904761904, 0.7678571428571429, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.08333333333333333, 0.9166666666666666, 0.9404761904761905, 0.9404761904761905, 0.8988095238095238, 0.005952380952380952, 0.0, 0.0, 0.22023809523809523, 0.005952380952380952, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4166666666666667, 0.3869047619047619, 0.3630952380952381, 0.32142857142857145, 0.023809523809523808, 0.005952380952380952, 0.005952380952380952, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005952380952380952, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011904761904761904, 0.005952380952380952, 0.005952380952380952, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017857142857142856, 0.24404761904761904, 0.8809523809523809, 0.06547619047619048, 0.02976190476190476, 0.0, 0.0, 0.0, 0.0, 0.005952380952380952, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.02976190476190476, 0.02976190476190476, 0.03571428571428571, 0.041666666666666664, 0.05952380952380952, 0.08928571428571429, 0.10119047619047619, 0.16071428571428573, 0.27380952380952384, 0.44642857142857145], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HRI1.gap.json b/pfam_gap_rates/HRI1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b245d8d75874f019e6f12b2969257ca7e78ef135
--- /dev/null
+++ b/pfam_gap_rates/HRI1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HSP33.gap.json b/pfam_gap_rates/HSP33.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df40d39c2c2bc0fa211b33fd34bae4bc94cc815b
--- /dev/null
+++ b/pfam_gap_rates/HSP33.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_11.gap.json b/pfam_gap_rates/HTH_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1b446c8c13ff482c18bcf7972c228f190e94ca3
--- /dev/null
+++ b/pfam_gap_rates/HTH_11.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_11", "n_seqs": 4360, "length": 62, "gap_rates": [0.47408256880733946, 0.40825688073394495, 0.2841743119266055, 0.1811926605504587, 0.13096330275229356, 0.10527522935779816, 0.08944954128440367, 0.06995412844036697, 0.055504587155963306, 0.39793577981651373, 0.05825688073394496, 0.04128440366972477, 0.033256880733944956, 0.05917431192660551, 0.10252293577981651, 0.8366972477064221, 0.020642201834862386, 0.009174311926605505, 0.007339449541284404, 0.0045871559633027525, 0.003669724770642202, 0.0027522935779816515, 0.0020642201834862386, 0.001834862385321101, 0.001834862385321101, 0.0013761467889908258, 0.0011467889908256881, 0.0009174311926605505, 0.00045871559633027525, 0.0, 0.0, 0.0, 0.00045871559633027525, 0.00045871559633027525, 0.0020642201834862386, 0.002981651376146789, 0.0034403669724770644, 0.005733944954128441, 0.009862385321100918, 0.013073394495412845, 0.02018348623853211, 0.02706422018348624, 0.036238532110091745, 0.054587155963302755, 0.8577981651376146, 0.906651376146789, 0.8901376146788991, 0.8201834862385321, 0.15389908256880733, 0.10779816513761468, 0.11353211009174312, 0.125, 0.1389908256880734, 0.14747706422018347, 0.15642201834862385, 0.1669724770642202, 0.2864678899082569, 0.8160550458715596, 0.7697247706422018, 0.2018348623853211, 0.338302752293578, 0.6298165137614679], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_23.gap.json b/pfam_gap_rates/HTH_23.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5f6f77577ae4b87f9eb2109fce7f7198dc5826f
--- /dev/null
+++ b/pfam_gap_rates/HTH_23.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_23", "n_seqs": 1083, "length": 52, "gap_rates": [0.8116343490304709, 0.6204986149584487, 0.5133887349953832, 0.4228993536472761, 0.3462603878116344, 0.31301939058171746, 0.27793167128347185, 0.2059095106186519, 0.15604801477377656, 0.12927054478301014, 0.10987996306555864, 0.07940904893813482, 0.04986149584487535, 0.04155124653739612, 0.034164358264081256, 0.8965835641735919, 0.9353647276084949, 0.6731301939058172, 0.019390581717451522, 0.008310249307479225, 0.002770083102493075, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.003693444136657433, 0.020313942751615882, 0.028624192059095107, 0.04524469067405355, 0.09418282548476455, 0.17266851338873498, 0.3231763619575254, 0.4118190212373038, 0.4441366574330563, 0.47645429362880887, 0.4986149584487535, 0.58264081255771, 0.6703601108033241, 0.7119113573407202, 0.7562326869806094, 0.9187442289935365], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_34.gap.json b/pfam_gap_rates/HTH_34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a375713071b118688d1c42eb0a33aaa76ce541a5
--- /dev/null
+++ b/pfam_gap_rates/HTH_34.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_34", "n_seqs": 428, "length": 83, "gap_rates": [0.4929906542056075, 0.13551401869158877, 0.11682242990654206, 0.09579439252336448, 0.07242990654205607, 0.04439252336448598, 0.0397196261682243, 0.0397196261682243, 0.035046728971962614, 0.03271028037383177, 0.03271028037383177, 0.9158878504672897, 0.9369158878504673, 0.8644859813084113, 0.035046728971962614, 0.02336448598130841, 0.014018691588785047, 0.011682242990654205, 0.009345794392523364, 0.007009345794392523, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.007009345794392523, 0.007009345794392523, 0.007009345794392523, 0.007009345794392523, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.007009345794392523, 0.007009345794392523, 0.007009345794392523, 0.07009345794392523, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.007009345794392523, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.011682242990654205, 0.014018691588785047, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.02336448598130841, 0.02102803738317757, 0.02102803738317757, 0.03271028037383177, 0.035046728971962614, 0.04672897196261682, 0.0630841121495327, 0.06775700934579439, 0.0911214953271028, 0.11214953271028037, 0.1542056074766355, 0.4252336448598131], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_40.gap.json b/pfam_gap_rates/HTH_40.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91a0aba4dfc33dfb1f59c4972197af37c67c605f
--- /dev/null
+++ b/pfam_gap_rates/HTH_40.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_40", "n_seqs": 629, "length": 102, "gap_rates": [0.4451510333863275, 0.2273449920508744, 0.12559618441971382, 0.06995230524642289, 0.058823529411764705, 0.046104928457869634, 0.034976152623211444, 0.033386327503974564, 0.025437201907790145, 0.8934817170111288, 0.017488076311605722, 0.017488076311605722, 0.012718600953895072, 0.011128775834658187, 0.011128775834658187, 0.011128775834658187, 0.00794912559618442, 0.00794912559618442, 0.00794912559618442, 0.006359300476947536, 0.006359300476947536, 0.006359300476947536, 0.003179650238473768, 0.003179650238473768, 0.003179650238473768, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.012718600953895072, 0.02066772655007949, 0.29411764705882354, 0.02384737678855326, 0.019077901430842606, 0.012718600953895072, 0.012718600953895072, 0.011128775834658187, 0.012718600953895072, 0.9236883942766295, 0.931637519872814, 0.9332273449920508, 0.9252782193958664, 0.9141494435612083, 0.022257551669316374, 0.9236883942766295, 0.8616852146263911, 0.019077901430842606, 0.017488076311605722, 0.9364069952305246, 0.02066772655007949, 0.022257551669316374, 0.02066772655007949, 0.02066772655007949, 0.019077901430842606, 0.019077901430842606, 0.019077901430842606, 0.025437201907790145, 0.02384737678855326, 0.028616852146263912, 0.028616852146263912, 0.03656597774244833, 0.06200317965023847, 0.057233704292527825, 0.07313195548489666, 0.06677265500794913, 0.057233704292527825, 0.8203497615262321, 0.9125596184419714, 0.8585055643879174, 0.7344992050874404, 0.04769475357710652, 0.04769475357710652, 0.0492845786963434, 0.0492845786963434, 0.06359300476947535, 0.06041335453100159, 0.05405405405405406, 0.05564387917329094, 0.1192368839427663, 0.0890302066772655, 0.07472178060413355, 0.06359300476947535, 0.06518282988871224, 0.06677265500794913, 0.06677265500794913, 0.06995230524642289, 0.07154213036565978, 0.07154213036565978, 0.07472178060413355, 0.1287758346581876, 0.4165341812400636], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_7.gap.json b/pfam_gap_rates/HTH_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..355f0a34b7bc45cccf7037c1b6c6660cda4a8532
--- /dev/null
+++ b/pfam_gap_rates/HTH_7.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_7", "n_seqs": 841, "length": 47, "gap_rates": [0.2901307966706302, 0.267538644470868, 0.24494649227110582, 0.2294887039239001, 0.21521997621878716, 0.20214030915576695, 0.19143876337693222, 0.178359096313912, 0.33174791914387636, 0.9453032104637337, 0.9227110582639715, 0.24613555291319858, 0.1938168846611177, 0.09274673008323424, 0.06896551724137931, 0.054696789536266346, 0.05112960760998811, 0.036860879904875146, 0.03329369797859691, 0.020214030915576695, 0.011890606420927468, 0.0047562425683709865, 0.0047562425683709865, 0.6920332936979786, 0.0035671819262782403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011890606420927466, 0.0011890606420927466, 0.0035671819262782403, 0.0035671819262782403, 0.0047562425683709865, 0.01070154577883472, 0.0356718192627824, 0.06896551724137931, 0.17479191438763378, 0.26634958382877527, 0.4221165279429251, 0.6884661117717004], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_Tnp_4.gap.json b/pfam_gap_rates/HTH_Tnp_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..469230da79a1d67ef098d9576f520d8a16a7a82e
--- /dev/null
+++ b/pfam_gap_rates/HTH_Tnp_4.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_Tnp_4", "n_seqs": 503, "length": 53, "gap_rates": [0.7296222664015904, 0.3836978131212724, 0.23658051689860835, 0.904572564612326, 0.14910536779324055, 0.12326043737574553, 0.09542743538767395, 0.08151093439363817, 0.07554671968190854, 0.06560636182902585, 0.06560636182902585, 0.055666003976143144, 0.04771371769383698, 0.0437375745526839, 0.039761431411530816, 0.03578528827037773, 0.027833001988071572, 0.027833001988071572, 0.02385685884691849, 0.02186878727634195, 0.005964214711729622, 0.005964214711729622, 0.005964214711729622, 0.003976143141153081, 0.005964214711729622, 0.005964214711729622, 0.0019880715705765406, 0.0019880715705765406, 0.0019880715705765406, 0.0019880715705765406, 0.003976143141153081, 0.009940357852882704, 0.011928429423459244, 0.015904572564612324, 0.019880715705765408, 0.02186878727634195, 0.02186878727634195, 0.02385685884691849, 0.02584493041749503, 0.03777335984095427, 0.05168986083499006, 0.0536779324055666, 0.061630218687872766, 0.07554671968190854, 0.08548707753479125, 0.08946322067594434, 0.09542743538767395, 0.10536779324055666, 0.12127236580516898, 0.16500994035785288, 0.220675944333996, 0.2922465208747515, 0.584493041749503], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_Tnp_Tc3_1.gap.json b/pfam_gap_rates/HTH_Tnp_Tc3_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc5a702a56a1302d3359fcc85edac22db3fd7467
--- /dev/null
+++ b/pfam_gap_rates/HTH_Tnp_Tc3_1.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_Tnp_Tc3_1", "n_seqs": 237, "length": 50, "gap_rates": [0.6835443037974683, 0.620253164556962, 0.48523206751054854, 0.4430379746835443, 0.379746835443038, 0.35443037974683544, 0.2869198312236287, 0.20675105485232068, 0.08860759493670886, 0.08860759493670886, 0.08016877637130802, 0.08016877637130802, 0.08438818565400844, 0.08016877637130802, 0.08016877637130802, 0.046413502109704644, 0.04219409282700422, 0.046413502109704644, 0.04219409282700422, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.03375527426160337, 0.004219409282700422, 0.004219409282700422, 0.0, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.008438818565400843, 0.02109704641350211, 0.02109704641350211, 0.02531645569620253, 0.029535864978902954, 0.029535864978902954, 0.03375527426160337, 0.03375527426160337, 0.03375527426160337, 0.04219409282700422, 0.06751054852320675, 0.10126582278481013, 0.10548523206751055, 0.12236286919831224, 0.1308016877637131, 0.18565400843881857, 0.6075949367088608, 0.7890295358649789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_Tnp_Tc3_2.gap.json b/pfam_gap_rates/HTH_Tnp_Tc3_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f94df0ec666276e1e7bb17bf8adcd549862d50ab
--- /dev/null
+++ b/pfam_gap_rates/HTH_Tnp_Tc3_2.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_Tnp_Tc3_2", "n_seqs": 1135, "length": 73, "gap_rates": [0.7118942731277533, 0.5453744493392071, 0.49251101321585905, 0.4458149779735683, 0.42290748898678415, 0.3814977973568282, 0.36387665198237884, 0.3392070484581498, 0.333920704845815, 0.3251101321585903, 0.31541850220264317, 0.3145374449339207, 0.2845814977973568, 0.21938325991189428, 0.19647577092511012, 0.19030837004405288, 0.17885462555066078, 0.17180616740088106, 0.1647577092511013, 0.1568281938325991, 0.15506607929515417, 0.14185022026431718, 0.12334801762114538, 0.29691629955947135, 0.2845814977973568, 0.27224669603524226, 0.5497797356828193, 0.13215859030837004, 0.12158590308370044, 0.06607929515418502, 0.053744493392070485, 0.050220264317180616, 0.033480176211453744, 0.030837004405286344, 0.02907488986784141, 0.01762114537444934, 0.010572687224669603, 0.007048458149779736, 0.0052863436123348016, 0.006167400881057269, 0.004405286343612335, 0.004405286343612335, 0.000881057268722467, 0.0026431718061674008, 0.0026431718061674008, 0.004405286343612335, 0.0052863436123348016, 0.019383259911894272, 0.02290748898678414, 0.027312775330396475, 0.03171806167400881, 0.03788546255506608, 0.04140969162995595, 0.05110132158590308, 0.044933920704845816, 0.06431718061674009, 0.06872246696035242, 0.0722466960352423, 0.07577092511013216, 0.10572687224669604, 0.10837004405286343, 0.11189427312775331, 0.11541850220264317, 0.12246696035242291, 0.13215859030837004, 0.15066079295154186, 0.17885462555066078, 0.18766519823788547, 0.19295154185022026, 0.2211453744493392, 0.26255506607929513, 0.3145374449339207, 0.6044052863436123], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Haemagg_act.gap.json b/pfam_gap_rates/Haemagg_act.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..045c2d471c9d00e28f7c2bddf548a41325dd9148
--- /dev/null
+++ b/pfam_gap_rates/Haemagg_act.gap.json
@@ -0,0 +1 @@
+{"family": "Haemagg_act", "n_seqs": 874, "length": 140, "gap_rates": [0.8398169336384439, 0.7311212814645309, 0.6258581235697941, 0.5640732265446224, 0.5102974828375286, 0.4805491990846682, 0.45423340961098396, 0.4290617848970252, 0.40503432494279173, 0.39359267734553777, 0.37299771167048057, 0.3501144164759725, 0.3340961098398169, 0.3306636155606407, 0.45080091533180777, 0.4839816933638444, 0.4668192219679634, 0.26773455377574373, 0.22540045766590389, 0.21853546910755148, 0.2231121281464531, 0.17963386727688788, 0.14416475972540047, 0.10983981693363844, 0.09267734553775744, 0.07437070938215103, 0.06292906178489703, 0.06864988558352403, 0.4805491990846682, 0.43363844393592677, 0.04004576659038902, 0.02631578947368421, 0.02288329519450801, 0.021739130434782608, 0.020594965675057208, 0.020594965675057208, 0.020594965675057208, 0.020594965675057208, 0.019450800915331808, 0.019450800915331808, 0.019450800915331808, 0.019450800915331808, 0.018306636155606407, 0.018306636155606407, 0.020594965675057208, 0.017162471395881007, 0.014874141876430207, 0.013729977116704805, 0.011441647597254004, 0.011441647597254004, 0.011441647597254004, 0.010297482837528604, 0.011441647597254004, 0.011441647597254004, 0.7643020594965675, 0.8421052631578947, 0.07665903890160183, 0.8112128146453089, 0.8157894736842105, 0.8249427917620137, 0.8329519450800915, 0.8363844393592678, 0.8386727688787186, 0.8386727688787186, 0.8409610983981693, 0.9336384439359268, 0.8478260869565217, 0.8398169336384439, 0.8386727688787186, 0.8375286041189931, 0.8363844393592678, 0.8295194508009154, 0.8157894736842105, 0.8135011441647597, 0.8112128146453089, 0.032036613272311214, 0.011441647597254004, 0.011441647597254004, 0.011441647597254004, 0.012585812356979404, 0.012585812356979404, 0.012585812356979404, 0.012585812356979404, 0.012585812356979404, 0.012585812356979404, 0.012585812356979404, 0.018306636155606407, 0.014874141876430207, 0.012585812356979404, 0.014874141876430207, 0.013729977116704805, 0.012585812356979404, 0.012585812356979404, 0.012585812356979404, 0.013729977116704805, 0.014874141876430207, 0.014874141876430207, 0.014874141876430207, 0.014874141876430207, 0.2654462242562929, 0.5537757437070938, 0.2791762013729977, 0.9290617848970252, 0.017162471395881007, 0.017162471395881007, 0.017162471395881007, 0.017162471395881007, 0.017162471395881007, 0.016018306636155607, 0.016018306636155607, 0.014874141876430207, 0.014874141876430207, 0.016018306636155607, 0.016018306636155607, 0.016018306636155607, 0.016018306636155607, 0.016018306636155607, 0.016018306636155607, 0.016018306636155607, 0.016018306636155607, 0.018306636155606407, 0.017162471395881007, 0.017162471395881007, 0.017162471395881007, 0.017162471395881007, 0.017162471395881007, 0.020594965675057208, 0.021739130434782608, 0.021739130434782608, 0.02402745995423341, 0.02631578947368421, 0.02745995423340961, 0.032036613272311214, 0.036613272311212815, 0.05377574370709382, 0.08237986270022883, 0.16247139588100687, 0.2299771167048055, 0.35697940503432496, 0.5675057208237986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Helicase_RecD.gap.json b/pfam_gap_rates/Helicase_RecD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50868eca32e1d36b888395a889184186554cbaf4
--- /dev/null
+++ b/pfam_gap_rates/Helicase_RecD.gap.json
@@ -0,0 +1 @@
+{"family": "Helicase_RecD", "n_seqs": 504, "length": 241, "gap_rates": [0.7321428571428571, 0.06746031746031746, 0.057539682539682536, 0.05555555555555555, 0.05555555555555555, 0.05357142857142857, 0.05357142857142857, 0.0496031746031746, 0.0496031746031746, 0.0496031746031746, 0.0496031746031746, 0.0496031746031746, 0.0496031746031746, 0.0496031746031746, 0.0496031746031746, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.0496031746031746, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.08928571428571429, 0.09126984126984126, 0.9424603174603174, 0.9464285714285714, 0.9087301587301587, 0.14484126984126985, 0.09126984126984126, 0.051587301587301584, 0.04563492063492063, 0.04563492063492063, 0.047619047619047616, 0.04563492063492063, 0.04365079365079365, 0.041666666666666664, 0.04365079365079365, 0.04365079365079365, 0.04365079365079365, 0.041666666666666664, 0.03968253968253968, 0.03968253968253968, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Hep_59.gap.json b/pfam_gap_rates/Hep_59.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..afed16082d5c1ce13246f961b108cc0bfca792b4
--- /dev/null
+++ b/pfam_gap_rates/Hep_59.gap.json
@@ -0,0 +1 @@
+{"family": "Hep_59", "n_seqs": 239, "length": 125, "gap_rates": [0.2301255230125523, 0.16736401673640167, 0.16736401673640167, 0.16736401673640167, 0.16317991631799164, 0.15481171548117154, 0.14644351464435146, 0.1087866108786611, 0.10460251046025104, 0.100418410041841, 0.8661087866108786, 0.803347280334728, 0.08786610878661087, 0.08368200836820083, 0.08368200836820083, 0.08368200836820083, 0.0794979079497908, 0.07112970711297072, 0.06694560669456066, 0.06694560669456066, 0.06276150627615062, 0.06276150627615062, 0.06276150627615062, 0.058577405857740586, 0.058577405857740586, 0.058577405857740586, 0.058577405857740586, 0.06276150627615062, 0.12133891213389121, 0.2510460251046025, 0.3054393305439331, 0.8702928870292888, 0.9079497907949791, 0.9414225941422594, 0.9288702928870293, 0.8870292887029289, 0.8577405857740585, 0.7740585774058577, 0.7615062761506276, 0.7322175732217573, 0.6736401673640168, 0.5899581589958159, 0.502092050209205, 0.4435146443514644, 0.32217573221757323, 0.26359832635983266, 0.15481171548117154, 0.100418410041841, 0.09205020920502092, 0.10460251046025104, 0.0794979079497908, 0.06276150627615062, 0.06276150627615062, 0.06276150627615062, 0.058577405857740586, 0.058577405857740586, 0.06276150627615062, 0.0794979079497908, 0.07531380753138076, 0.08786610878661087, 0.08368200836820083, 0.06694560669456066, 0.8828451882845189, 0.9163179916317992, 0.8158995815899581, 0.07112970711297072, 0.0794979079497908, 0.9497907949790795, 0.08368200836820083, 0.06694560669456066, 0.058577405857740586, 0.08786610878661087, 0.09623430962343096, 0.100418410041841, 0.09623430962343096, 0.09205020920502092, 0.895397489539749, 0.9288702928870293, 0.7949790794979079, 0.26359832635983266, 0.27615062761506276, 0.13389121338912133, 0.04602510460251046, 0.03765690376569038, 0.05439330543933055, 0.07112970711297072, 0.1087866108786611, 0.0794979079497908, 0.7949790794979079, 0.9079497907949791, 0.8535564853556485, 0.7824267782426778, 0.24686192468619247, 0.200836820083682, 0.14644351464435146, 0.11715481171548117, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.029288702928870293, 0.029288702928870293, 0.02510460251046025, 0.02510460251046025, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.02510460251046025, 0.03347280334728033, 0.04602510460251046, 0.06276150627615062, 0.0794979079497908, 0.0794979079497908, 0.08786610878661087, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09623430962343096, 0.09623430962343096, 0.09623430962343096, 0.09623430962343096, 0.10460251046025104, 0.1297071129707113, 0.1506276150627615, 0.20502092050209206, 0.4435146443514644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hepar_II_III.gap.json b/pfam_gap_rates/Hepar_II_III.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..defa602aaf71b548f71d6c28f3a073c9718e7497
--- /dev/null
+++ b/pfam_gap_rates/Hepar_II_III.gap.json
@@ -0,0 +1 @@
+{"family": "Hepar_II_III", "n_seqs": 877, "length": 335, "gap_rates": [0.8893956670467503, 0.7434435575826682, 0.6180159635119726, 0.5131128848346637, 0.43101482326111745, 0.3660205245153934, 0.31584948688711517, 0.2702394526795895, 0.2508551881413911, 0.2291904218928164, 0.21664766248574688, 0.20410490307867732, 0.1949828962371722, 0.18814139110604333, 0.18129988597491448, 0.17217787913340935, 0.16875712656784492, 0.14367160775370583, 0.5997719498289624, 0.6807297605473204, 0.928164196123147, 0.8494868871151653, 0.6351197263397947, 0.5758266818700114, 0.11630558722919042, 0.10718358038768529, 0.9190421892816419, 0.08437856328392246, 0.07411630558722919, 0.06727480045610035, 0.0661345496009122, 0.05473204104903079, 0.05017103762827822, 0.04446978335233751, 0.04218928164196123, 0.04903078677309008, 0.04446978335233751, 0.05017103762827822, 0.5290763968072976, 0.5986316989737742, 0.5621436716077537, 0.5393386545039909, 0.03876852907639681, 0.01596351197263398, 0.013683010262257697, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HicB.gap.json b/pfam_gap_rates/HicB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3be51397d59a06598ee837e014d680392991c568
--- /dev/null
+++ b/pfam_gap_rates/HicB.gap.json
@@ -0,0 +1 @@
+{"family": "HicB", "n_seqs": 497, "length": 51, "gap_rates": [0.6559356136820925, 0.641851106639839, 0.579476861167002, 0.5633802816901409, 0.5331991951710262, 0.5251509054325956, 0.49295774647887325, 0.46680080482897385, 0.4567404426559356, 0.43259557344064387, 0.4245472837022133, 0.4024144869215292, 0.38028169014084506, 0.3641851106639839, 0.3319919517102616, 0.3118712273641851, 0.28169014084507044, 0.26156941649899396, 0.15694164989939638, 0.08450704225352113, 0.028169014084507043, 0.01609657947686117, 0.01609657947686117, 0.006036217303822937, 0.008048289738430584, 0.006036217303822937, 0.006036217303822937, 0.004024144869215292, 0.004024144869215292, 0.002012072434607646, 0.002012072434607646, 0.002012072434607646, 0.002012072434607646, 0.002012072434607646, 0.004024144869215292, 0.006036217303822937, 0.006036217303822937, 0.006036217303822937, 0.006036217303822937, 0.006036217303822937, 0.008048289738430584, 0.01006036217303823, 0.012072434607645875, 0.012072434607645875, 0.014084507042253521, 0.028169014084507043, 0.03621730382293763, 0.04426559356136821, 0.07847082494969819, 0.18712273641851107, 0.3843058350100604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HisG_C.gap.json b/pfam_gap_rates/HisG_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e6d4f1f9959ea587bb2f06be0ba3c96b3951993
--- /dev/null
+++ b/pfam_gap_rates/HisG_C.gap.json
@@ -0,0 +1 @@
+{"family": "HisG_C", "n_seqs": 836, "length": 86, "gap_rates": [0.1375598086124402, 0.05502392344497608, 0.01076555023923445, 0.007177033492822967, 0.005980861244019139, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.0035885167464114833, 0.0035885167464114833, 0.0035885167464114833, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.9318181818181818, 0.9318181818181818, 0.9318181818181818, 0.9318181818181818, 0.9318181818181818, 0.9318181818181818, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.005980861244019139, 0.0011961722488038277, 0.0, 0.0011961722488038277, 0.0, 0.0023923444976076554, 0.0, 0.0011961722488038277, 0.0035885167464114833, 0.9090909090909091, 0.9210526315789473, 0.9425837320574163, 0.9449760765550239, 0.9294258373205742, 0.9150717703349283, 0.7679425837320574, 0.0, 0.011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0035885167464114833, 0.0035885167464114833, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.011961722488038277, 0.0035885167464114833, 0.0035885167464114833, 0.0035885167464114833, 0.0035885167464114833, 0.0035885167464114833, 0.005980861244019139, 0.013157894736842105, 0.0215311004784689, 0.028708133971291867, 0.09330143540669857, 0.35047846889952156], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HisKA_2.gap.json b/pfam_gap_rates/HisKA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8cb5d038775eb66c77bccec1ff7908cf9d2ebfe
--- /dev/null
+++ b/pfam_gap_rates/HisKA_2.gap.json
@@ -0,0 +1 @@
+{"family": "HisKA_2", "n_seqs": 1200, "length": 76, "gap_rates": [0.023333333333333334, 0.015833333333333335, 0.010833333333333334, 0.01, 0.009166666666666667, 0.008333333333333333, 0.008333333333333333, 0.0075, 0.0075, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.010833333333333334, 0.013333333333333334, 0.01, 0.006666666666666667, 0.0075, 0.009166666666666667, 0.013333333333333334, 0.025, 0.015, 0.01, 0.009166666666666667, 0.075, 0.030833333333333334, 0.021666666666666667, 0.0125, 0.011666666666666667, 0.008333333333333333, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.005833333333333334, 0.005833333333333334, 0.005833333333333334, 0.005833333333333334, 0.006666666666666667, 0.005, 0.005, 0.005, 0.006666666666666667, 0.006666666666666667, 0.013333333333333334, 0.0175, 0.018333333333333333, 0.018333333333333333, 0.018333333333333333, 0.018333333333333333, 0.07833333333333334, 0.03, 0.24666666666666667, 0.02666666666666667, 0.025833333333333333, 0.025833333333333333, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.03166666666666667, 0.03833333333333333, 0.050833333333333335, 0.06333333333333334, 0.07, 0.1125, 0.155, 0.2, 0.30083333333333334, 0.42583333333333334, 0.6066666666666667, 0.795], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/His_kinase.gap.json b/pfam_gap_rates/His_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0973f43d63f4e668976a96f3e3fe90b1ff06c2d
--- /dev/null
+++ b/pfam_gap_rates/His_kinase.gap.json
@@ -0,0 +1 @@
+{"family": "His_kinase", "n_seqs": 4390, "length": 82, "gap_rates": [0.4758542141230068, 0.06378132118451026, 0.026879271070615034, 0.01662870159453303, 0.010933940774487472, 0.00979498861047836, 0.007517084282460136, 0.006378132118451025, 0.00592255125284738, 0.004783599088838269, 0.004328018223234624, 0.004100227790432802, 0.0038724373576309794, 0.0036446469248291574, 0.003416856492027335, 0.0031890660592255125, 0.0031890660592255125, 0.0031890660592255125, 0.002733485193621868, 0.002733485193621868, 0.002733485193621868, 0.0031890660592255125, 0.0031890660592255125, 0.003416856492027335, 0.00296127562642369, 0.005466970387243736, 0.39863325740318906, 0.007744874715261959, 0.007744874715261959, 0.005011389521640091, 0.004783599088838269, 0.002277904328018223, 0.002733485193621868, 0.002733485193621868, 0.003416856492027335, 0.00296127562642369, 0.002050113895216401, 0.002050113895216401, 0.002050113895216401, 0.0015945330296127562, 0.0015945330296127562, 0.0018223234624145787, 0.0018223234624145787, 0.002050113895216401, 0.002277904328018223, 0.00296127562642369, 0.00296127562642369, 0.00296127562642369, 0.00296127562642369, 0.4861047835990888, 0.08314350797266515, 0.13940774487471527, 0.08314350797266515, 0.07904328018223235, 0.004100227790432802, 0.7810933940774487, 0.13120728929384967, 0.004100227790432802, 0.004100227790432802, 0.004100227790432802, 0.004100227790432802, 0.004100227790432802, 0.004100227790432802, 0.004100227790432802, 0.004328018223234624, 0.004328018223234624, 0.004328018223234624, 0.005011389521640091, 0.0056947608200455585, 0.0056947608200455585, 0.0056947608200455585, 0.0056947608200455585, 0.00592255125284738, 0.00592255125284738, 0.007972665148063782, 0.011617312072892938, 0.0193621867881549, 0.02665148063781321, 0.05899772209567198, 0.13029612756264236, 0.28405466970387244, 0.483371298405467], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Histone.gap.json b/pfam_gap_rates/Histone.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25dfd2faf6c0ce3ebdc9c9e73d0ede9c2c4283a2
--- /dev/null
+++ b/pfam_gap_rates/Histone.gap.json
@@ -0,0 +1 @@
+{"family": "Histone", "n_seqs": 5000, "length": 135, "gap_rates": [0.8062, 0.799, 0.7904, 0.7852, 0.7766, 0.7702, 0.7642, 0.7572, 0.7528, 0.749, 0.7404, 0.7316, 0.7282, 0.7244, 0.7144, 0.7084, 0.6974, 0.693, 0.6848, 0.681, 0.6736, 0.6656, 0.6552, 0.6476, 0.6528, 0.6552, 0.6496, 0.8366, 0.6264, 0.6174, 0.6122, 0.6054, 0.5992, 0.5906, 0.581, 0.5654, 0.5404, 0.5186, 0.5062, 0.4962, 0.4824, 0.4712, 0.4616, 0.4476, 0.4288, 0.3676, 0.3526, 0.3322, 0.3034, 0.2686, 0.2392, 0.2138, 0.1622, 0.1376, 0.1094, 0.1032, 0.0978, 0.0912, 0.088, 0.0848, 0.0836, 0.0798, 0.0746, 0.0708, 0.069, 0.0692, 0.0626, 0.0594, 0.0592, 0.0586, 0.0562, 0.0614, 0.0558, 0.0554, 0.0568, 0.0546, 0.0548, 0.0552, 0.9436, 0.9206, 0.5872, 0.3208, 0.3116, 0.3074, 0.0478, 0.0442, 0.0398, 0.04, 0.0406, 0.0392, 0.0386, 0.0372, 0.0292, 0.0282, 0.0274, 0.025, 0.0246, 0.0248, 0.024, 0.0246, 0.0252, 0.0248, 0.0254, 0.0252, 0.0254, 0.0256, 0.0258, 0.0274, 0.0288, 0.029, 0.0302, 0.0306, 0.0328, 0.0336, 0.0344, 0.036, 0.0376, 0.0382, 0.0396, 0.042, 0.044, 0.045, 0.0452, 0.0464, 0.0472, 0.0482, 0.0504, 0.0518, 0.0544, 0.0558, 0.06, 0.0648, 0.0894, 0.3454, 0.6498], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HlyD.gap.json b/pfam_gap_rates/HlyD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aaa30c2eac9974a4dc4eefa2484d059cbb055f8f
--- /dev/null
+++ b/pfam_gap_rates/HlyD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Homeobox_KN.gap.json b/pfam_gap_rates/Homeobox_KN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8baf82f78a00b981f499820680f48307feb4c186
--- /dev/null
+++ b/pfam_gap_rates/Homeobox_KN.gap.json
@@ -0,0 +1 @@
+{"family": "Homeobox_KN", "n_seqs": 1780, "length": 40, "gap_rates": [0.0747191011235955, 0.06685393258426967, 0.06685393258426967, 0.0449438202247191, 0.04101123595505618, 0.03539325842696629, 0.028651685393258425, 0.025842696629213482, 0.025280898876404494, 0.016853932584269662, 0.014606741573033709, 0.012921348314606741, 0.011797752808988765, 0.011235955056179775, 0.009550561797752809, 0.008988764044943821, 0.007865168539325843, 0.007865168539325843, 0.0033707865168539327, 0.0028089887640449437, 0.0016853932584269663, 0.0028089887640449437, 0.0016853932584269663, 0.0016853932584269663, 0.0022471910112359553, 0.0022471910112359553, 0.0028089887640449437, 0.003932584269662922, 0.0033707865168539327, 0.010674157303370787, 0.014606741573033709, 0.019101123595505618, 0.02359550561797753, 0.029775280898876405, 0.03202247191011236, 0.033707865168539325, 0.03539325842696629, 0.03932584269662921, 0.04157303370786517, 0.07303370786516854], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hormone_1.gap.json b/pfam_gap_rates/Hormone_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d19d96f1b659a7e3226843df71b28d58e8a3dd2
--- /dev/null
+++ b/pfam_gap_rates/Hormone_1.gap.json
@@ -0,0 +1 @@
+{"family": "Hormone_1", "n_seqs": 122, "length": 231, "gap_rates": [0.45081967213114754, 0.3770491803278688, 0.36065573770491804, 0.36065573770491804, 0.36065573770491804, 0.32786885245901637, 0.3114754098360656, 0.30327868852459017, 0.30327868852459017, 0.30327868852459017, 0.32786885245901637, 0.8852459016393442, 0.32786885245901637, 0.319672131147541, 0.27049180327868855, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.3442622950819672, 0.45081967213114754, 0.4672131147540984, 0.39344262295081966, 0.36065573770491804, 0.30327868852459017, 0.2459016393442623, 0.22131147540983606, 0.16393442622950818, 0.1557377049180328, 0.1557377049180328, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.13934426229508196, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.13114754098360656, 0.12295081967213115, 0.11475409836065574, 0.12295081967213115, 0.12295081967213115, 0.12295081967213115, 0.12295081967213115, 0.12295081967213115, 0.11475409836065574, 0.7131147540983607, 0.7704918032786885, 0.8114754098360656, 0.9426229508196722, 0.9344262295081968, 0.8114754098360656, 0.7213114754098361, 0.6475409836065574, 0.14754098360655737, 0.1557377049180328, 0.14754098360655737, 0.13934426229508196, 0.13934426229508196, 0.10655737704918032, 0.7295081967213115, 0.8278688524590164, 0.8524590163934426, 0.860655737704918, 0.8278688524590164, 0.7786885245901639, 0.6967213114754098, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.16393442622950818, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.12295081967213115, 0.1557377049180328, 0.1557377049180328, 0.12295081967213115, 0.11475409836065574, 0.11475409836065574, 0.12295081967213115, 0.11475409836065574, 0.09836065573770492, 0.08196721311475409, 0.08196721311475409, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.2786885245901639, 0.2786885245901639, 0.2786885245901639, 0.2786885245901639, 0.10655737704918032, 0.10655737704918032, 0.09016393442622951, 0.09016393442622951, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.09016393442622951, 0.08196721311475409, 0.08196721311475409, 0.09016393442622951, 0.08196721311475409, 0.08196721311475409, 0.12295081967213115, 0.13934426229508196, 0.08196721311475409, 0.07377049180327869, 0.07377049180327869, 0.06557377049180328, 0.06557377049180328, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.06557377049180328, 0.6147540983606558, 0.6721311475409836, 0.2786885245901639, 0.13934426229508196, 0.09836065573770492, 0.09836065573770492, 0.09016393442622951, 0.09016393442622951, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.319672131147541, 0.2786885245901639, 0.08196721311475409, 0.07377049180327869, 0.07377049180327869, 0.09016393442622951, 0.08196721311475409, 0.07377049180327869, 0.07377049180327869, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.07377049180327869, 0.08196721311475409, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.09016393442622951, 0.09016393442622951, 0.1557377049180328, 0.12295081967213115, 0.13934426229508196, 0.13934426229508196, 0.3114754098360656, 0.1885245901639344, 0.20491803278688525], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HpaB.gap.json b/pfam_gap_rates/HpaB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04b5aa332c1385a9e7af2f9d4d6b2c11072fed16
--- /dev/null
+++ b/pfam_gap_rates/HpaB.gap.json
@@ -0,0 +1 @@
+{"family": "HpaB", "n_seqs": 410, "length": 204, "gap_rates": [0.6707317073170732, 0.35121951219512193, 0.23414634146341465, 0.16585365853658537, 0.12926829268292683, 0.11707317073170732, 0.08292682926829269, 0.07317073170731707, 0.06341463414634146, 0.05853658536585366, 0.05121951219512195, 0.04878048780487805, 0.03902439024390244, 0.036585365853658534, 0.03170731707317073, 0.02195121951219512, 0.07804878048780488, 0.014634146341463415, 0.4634146341463415, 0.44146341463414634, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.02195121951219512, 0.014634146341463415, 0.014634146341463415, 0.01951219512195122, 0.014634146341463415, 0.03170731707317073, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.06829268292682927, 0.9390243902439024, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.012195121951219513, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.7829268292682927, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.01951219512195122, 0.23414634146341465, 0.02195121951219512, 0.01707317073170732, 0.01707317073170732, 0.024390243902439025, 0.01707317073170732, 0.01707317073170732, 0.01707317073170732, 0.01707317073170732, 0.01951219512195122, 0.01951219512195122, 0.01707317073170732, 0.01707317073170732, 0.026829268292682926, 0.4121951219512195, 0.03902439024390244, 0.02195121951219512, 0.01951219512195122, 0.01707317073170732, 0.01707317073170732, 0.014634146341463415, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.014634146341463415, 0.014634146341463415, 0.01707317073170732, 0.01707317073170732, 0.01707317073170732, 0.026829268292682926, 0.03170731707317073, 0.08536585365853659, 0.08780487804878048, 0.09024390243902439, 0.12439024390243902, 0.06341463414634146, 0.06341463414634146, 0.05853658536585366, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.01707317073170732, 0.01707317073170732, 0.01707317073170732, 0.01707317073170732, 0.01707317073170732, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.02195121951219512, 0.02195121951219512, 0.02195121951219512, 0.026829268292682926, 0.02926829268292683, 0.02926829268292683, 0.03170731707317073, 0.03414634146341464, 0.03902439024390244, 0.04390243902439024, 0.04390243902439024, 0.05365853658536585, 0.06341463414634146, 0.07317073170731707, 0.11707317073170732, 0.6780487804878049], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HrcA_DNA-bdg.gap.json b/pfam_gap_rates/HrcA_DNA-bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc974db1bbad94f33742bb6d0337eb352179ea4b
--- /dev/null
+++ b/pfam_gap_rates/HrcA_DNA-bdg.gap.json
@@ -0,0 +1 @@
+{"family": "HrcA_DNA-bdg", "n_seqs": 507, "length": 86, "gap_rates": [0.5877712031558185, 0.29191321499013806, 0.2465483234714004, 0.1913214990138067, 0.14990138067061143, 0.10453648915187377, 0.0650887573964497, 0.01972386587771203, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9447731755424064, 0.9428007889546351, 0.0, 0.0, 0.9270216962524654, 0.9250493096646942, 0.0, 0.5207100591715976, 0.514792899408284, 0.0, 0.9487179487179487, 0.0, 0.0, 0.0, 0.9487179487179487, 0.9487179487179487, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.05325443786982249, 0.35700197238658776, 0.3668639053254438, 0.07889546351084813, 0.13806706114398423, 0.14201183431952663, 0.1203155818540434, 0.10059171597633136, 0.10059171597633136, 0.10453648915187377, 0.10453648915187377, 0.10453648915187377, 0.1222879684418146, 0.14398422090729784, 0.16765285996055226, 0.19723865877712032, 0.21104536489151873, 0.27613412228796846, 0.6134122287968442, 0.8954635108481263, 0.9053254437869822, 0.9191321499013807, 0.9230769230769231, 0.9388560157790927], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HtaA.gap.json b/pfam_gap_rates/HtaA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ddad0ee58a54e9e7fb0e410c986067f7db85623
--- /dev/null
+++ b/pfam_gap_rates/HtaA.gap.json
@@ -0,0 +1 @@
+{"family": "HtaA", "n_seqs": 185, "length": 200, "gap_rates": [0.6810810810810811, 0.23783783783783785, 0.15675675675675677, 0.07027027027027027, 0.07027027027027027, 0.06486486486486487, 0.06486486486486487, 0.06486486486486487, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.2, 0.16756756756756758, 0.20540540540540542, 0.16216216216216217, 0.11891891891891893, 0.07567567567567568, 0.06486486486486487, 0.06486486486486487, 0.05405405405405406, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.0972972972972973, 0.918918918918919, 0.918918918918919, 0.918918918918919, 0.9135135135135135, 0.07027027027027027, 0.05405405405405406, 0.07027027027027027, 0.11351351351351352, 0.5297297297297298, 0.8324324324324325, 0.14594594594594595, 0.08648648648648649, 0.918918918918919, 0.9351351351351351, 0.918918918918919, 0.03783783783783784, 0.02702702702702703, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.8648648648648649, 0.021621621621621623, 0.021621621621621623, 0.0918918918918919, 0.10810810810810811, 0.08648648648648649, 0.11891891891891893, 0.0918918918918919, 0.043243243243243246, 0.02702702702702703, 0.032432432432432434, 0.9027027027027027, 0.02702702702702703, 0.02702702702702703, 0.021621621621621623, 0.021621621621621623, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.9351351351351351, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.07567567567567568, 0.7135135135135136, 0.7189189189189189, 0.8810810810810811, 0.9027027027027027, 0.9459459459459459, 0.9405405405405406, 0.8972972972972973, 0.8054054054054054, 0.7135135135135136, 0.7135135135135136, 0.03783783783783784, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.016216216216216217, 0.016216216216216217, 0.010810810810810811, 0.8864864864864865, 0.016216216216216217, 0.010810810810810811, 0.918918918918919, 0.02702702702702703, 0.02702702702702703, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.010810810810810811, 0.016216216216216217, 0.043243243243243246, 0.043243243243243246, 0.0918918918918919, 0.2702702702702703, 0.9243243243243243, 0.9081081081081082, 0.2864864864864865, 0.3027027027027027, 0.3027027027027027, 0.2756756756756757, 0.8054054054054054, 0.8324324324324325, 0.8972972972972973, 0.9297297297297298, 0.8702702702702703, 0.8324324324324325, 0.7621621621621621, 0.40540540540540543, 0.1945945945945946, 0.14594594594594595, 0.11891891891891893, 0.08648648648648649, 0.04864864864864865, 0.032432432432432434, 0.021621621621621623, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.021621621621621623, 0.021621621621621623, 0.9351351351351351, 0.02702702702702703, 0.043243243243243246, 0.11351351351351352, 0.10810810810810811, 0.11351351351351352, 0.5621621621621622, 0.8864864864864865, 0.4594594594594595, 0.0972972972972973, 0.07567567567567568, 0.06486486486486487, 0.07027027027027027, 0.06486486486486487, 0.06486486486486487, 0.07027027027027027, 0.06486486486486487, 0.08108108108108109, 0.08648648648648649, 0.20540540540540542, 0.07567567567567568, 0.07027027027027027, 0.0972972972972973, 0.10270270270270271, 0.10270270270270271, 0.12972972972972974, 0.10810810810810811, 0.10270270270270271, 0.0972972972972973, 0.0972972972972973, 0.11351351351351352, 0.9405405405405406, 0.9459459459459459, 0.9405405405405406, 0.9405405405405406, 0.2702702702702703, 0.14054054054054055, 0.11891891891891893, 0.11891891891891893, 0.12432432432432433, 0.14054054054054055, 0.13513513513513514, 0.15675675675675677, 0.16756756756756758, 0.16756756756756758, 0.1783783783783784, 0.1783783783783784, 0.1891891891891892, 0.21081081081081082, 0.2648648648648649, 0.654054054054054], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HutD.gap.json b/pfam_gap_rates/HutD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27fe82862bdd7ebdc47ddafa6b4195ad32429139
--- /dev/null
+++ b/pfam_gap_rates/HutD.gap.json
@@ -0,0 +1 @@
+{"family": "HutD", "n_seqs": 241, "length": 200, "gap_rates": [0.5726141078838174, 0.3070539419087137, 0.18672199170124482, 0.14937759336099585, 0.11618257261410789, 0.06639004149377593, 0.05394190871369295, 0.04564315352697095, 0.34439834024896265, 0.34439834024896265, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03319502074688797, 0.03319502074688797, 0.08298755186721991, 0.0912863070539419, 0.23236514522821577, 0.1991701244813278, 0.14107883817427386, 0.0954356846473029, 0.0912863070539419, 0.07883817427385892, 0.6721991701244814, 0.6597510373443983, 0.1037344398340249, 0.07883817427385892, 0.04149377593360996, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.024896265560165973, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.024896265560165973, 0.024896265560165973, 0.6970954356846473, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.02074688796680498, 0.024896265560165973, 0.02074688796680498, 0.024896265560165973, 0.029045643153526972, 0.024896265560165973, 0.02074688796680498, 0.02074688796680498, 0.024896265560165973, 0.03319502074688797, 0.04149377593360996, 0.058091286307053944, 0.04979253112033195, 0.29045643153526973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.02074688796680498, 0.02074688796680498, 0.9128630705394191, 0.06224066390041494, 0.5601659751037344, 0.26141078838174275, 0.9294605809128631, 0.04564315352697095, 0.04564315352697095, 0.04979253112033195, 0.02074688796680498, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.024896265560165973, 0.029045643153526972, 0.1037344398340249, 0.3112033195020747, 0.2946058091286307, 0.23651452282157676, 0.04149377593360996, 0.03734439834024896, 0.03734439834024896, 0.04564315352697095, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.04979253112033195, 0.07883817427385892, 0.0995850622406639, 0.07883817427385892, 0.11618257261410789, 0.04979253112033195, 0.058091286307053944, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.05394190871369295, 0.1078838174273859, 0.2821576763485477, 0.27800829875518673, 0.17842323651452283, 0.14937759336099585, 0.14107883817427386, 0.13278008298755187, 0.12448132780082988, 0.21161825726141079, 0.27385892116182575, 0.8672199170124482, 0.21161825726141079, 0.26556016597510373, 0.23236514522821577, 0.24066390041493776, 0.2074688796680498, 0.8755186721991701, 0.9087136929460581, 0.91701244813278, 0.941908713692946, 0.946058091286307, 0.9377593360995851, 0.9128630705394191, 0.8921161825726142, 0.8423236514522822, 0.12863070539419086, 0.1078838174273859, 0.1078838174273859, 0.1078838174273859, 0.1078838174273859, 0.1078838174273859, 0.1078838174273859, 0.23236514522821577, 0.17427385892116182, 0.14937759336099585, 0.13692946058091288, 0.4024896265560166, 0.42323651452282157, 0.42738589211618255, 0.6099585062240664, 0.5684647302904564, 0.9128630705394191, 0.9336099585062241, 0.8921161825726142, 0.3983402489626556, 0.1825726141078838, 0.17427385892116182, 0.17012448132780084, 0.16597510373443983, 0.16597510373443983, 0.17012448132780084, 0.17012448132780084, 0.17427385892116182, 0.17842323651452283, 0.18672199170124482, 0.18672199170124482, 0.2074688796680498, 0.21161825726141079, 0.25311203319502074, 0.2697095435684647, 0.3029045643153527, 0.3236514522821577, 0.9128630705394191, 0.6348547717842323, 0.6307053941908713, 0.5933609958506224, 0.5892116182572614, 0.6099585062240664, 0.6431535269709544, 0.6763485477178424, 0.7178423236514523, 0.7427385892116183, 0.7800829875518672, 0.7966804979253111, 0.8257261410788381, 0.8921161825726142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HxlR.gap.json b/pfam_gap_rates/HxlR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..368563f8255c996f35f757bad43eb0ae6d07fef7
--- /dev/null
+++ b/pfam_gap_rates/HxlR.gap.json
@@ -0,0 +1 @@
+{"family": "HxlR", "n_seqs": 4023, "length": 90, "gap_rates": [0.40193885160328113, 0.08923688789460602, 0.04946557295550584, 0.03803131991051454, 0.03479990057171265, 0.033805617698235146, 0.03181705195128014, 0.028337061894108874, 0.025105642555306985, 0.024359930400198855, 0.023365647526721354, 0.023365647526721354, 0.021874223216505097, 0.021377081779766344, 0.020631369624658214, 0.020134228187919462, 0.7636092468307233, 0.020134228187919462, 0.01715137956748695, 0.014914243102162566, 0.014417101665423813, 0.01391996022868506, 0.013671389510315685, 0.013422818791946308, 0.012925677355207556, 0.012428535918468804, 0.012925677355207556, 0.012179965200099428, 0.010937111608252548, 0.14193388018891376, 0.02237136465324385, 0.010937111608252548, 0.009942828734775044, 0.009694258016405667, 0.009445687298036291, 0.006214267959234402, 0.006462838677603778, 0.00571712652249565, 0.00571712652249565, 0.006214267959234402, 0.006214267959234402, 0.006214267959234402, 0.006462838677603778, 0.006462838677603778, 0.006214267959234402, 0.006462838677603778, 0.006214267959234402, 0.006462838677603778, 0.006214267959234402, 0.006462838677603778, 0.007208550832711907, 0.009942828734775044, 0.013422818791946308, 0.018642803877703208, 0.03131991051454139, 0.04001988565746955, 0.04126273924931643, 0.037037037037037035, 0.03554561272682078, 0.03629132488192891, 0.06487695749440715, 0.037285607755406416, 0.019885657469550087, 0.009445687298036291, 0.009197116579666915, 0.009197116579666915, 0.008948545861297539, 0.008948545861297539, 0.009694258016405667, 0.009694258016405667, 0.01019139945314442, 0.010937111608252548, 0.0114342530449913, 0.012179965200099428, 0.01267710663683818, 0.014168530947054437, 0.01590852597564007, 0.018642803877703208, 0.019388516032811335, 0.020134228187919462, 0.023365647526721354, 0.025105642555306985, 0.028834203330847626, 0.03131991051454139, 0.0447427293064877, 0.0695998011434253, 0.11608252547849864, 0.21377081779766344, 0.4009445687298036, 0.6808351976137211], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hyd_WA.gap.json b/pfam_gap_rates/Hyd_WA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba6ecb4c73efae863d0cec110c4615e86278d384
--- /dev/null
+++ b/pfam_gap_rates/Hyd_WA.gap.json
@@ -0,0 +1 @@
+{"family": "Hyd_WA", "n_seqs": 492, "length": 31, "gap_rates": [0.5894308943089431, 0.06910569105691057, 0.028455284552845527, 0.012195121951219513, 0.006097560975609756, 0.006097560975609756, 0.008130081300813009, 0.006097560975609756, 0.0, 0.0, 0.9329268292682927, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014227642276422764, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008130081300813009, 0.008130081300813009, 0.01016260162601626, 0.01016260162601626, 0.05894308943089431, 0.22764227642276422, 0.40040650406504064], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hydrophobin.gap.json b/pfam_gap_rates/Hydrophobin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b67101b8ee68c8c772384cd578f0dafbf9d082d
--- /dev/null
+++ b/pfam_gap_rates/Hydrophobin.gap.json
@@ -0,0 +1 @@
+{"family": "Hydrophobin", "n_seqs": 515, "length": 92, "gap_rates": [0.13009708737864079, 0.912621359223301, 0.1203883495145631, 0.10097087378640776, 0.08155339805825243, 0.06407766990291262, 0.05825242718446602, 0.036893203883495145, 0.02912621359223301, 0.02524271844660194, 0.02524271844660194, 0.02524271844660194, 0.02524271844660194, 0.02524271844660194, 0.031067961165048542, 0.036893203883495145, 0.26990291262135924, 0.05631067961165048, 0.9495145631067962, 0.883495145631068, 0.47378640776699027, 0.17281553398058253, 0.1145631067961165, 0.06019417475728155, 0.03495145631067961, 0.031067961165048542, 0.021359223300970873, 0.019417475728155338, 0.8893203883495145, 0.015533980582524271, 0.021359223300970873, 0.019417475728155338, 0.036893203883495145, 0.019417475728155338, 0.07766990291262135, 0.0854368932038835, 0.02912621359223301, 0.027184466019417475, 0.027184466019417475, 0.04854368932038835, 0.02524271844660194, 0.017475728155339806, 0.02330097087378641, 0.019417475728155338, 0.015533980582524271, 0.013592233009708738, 0.013592233009708738, 0.017475728155339806, 0.019417475728155338, 0.015533980582524271, 0.07572815533980583, 0.8796116504854369, 0.10485436893203884, 0.08932038834951456, 0.13980582524271845, 0.1825242718446602, 0.18640776699029127, 0.32815533980582523, 0.9339805825242719, 0.9475728155339805, 0.9320388349514563, 0.03495145631067961, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.027184466019417475, 0.02912621359223301, 0.02912621359223301, 0.031067961165048542, 0.03300970873786408, 0.03300970873786408, 0.03300970873786408, 0.03300970873786408, 0.038834951456310676, 0.04466019417475728, 0.04271844660194175, 0.04660194174757282, 0.9262135922330097, 0.887378640776699, 0.0970873786407767, 0.06990291262135923, 0.08737864077669903, 0.07961165048543689, 0.07184466019417475, 0.9398058252427185, 0.9359223300970874, 0.07184466019417475, 0.07378640776699029, 0.08155339805825243, 0.0912621359223301, 0.1203883495145631, 0.22524271844660193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ICMT.gap.json b/pfam_gap_rates/ICMT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2625582a958217286fe0320ad67c92b78551e19d
--- /dev/null
+++ b/pfam_gap_rates/ICMT.gap.json
@@ -0,0 +1 @@
+{"family": "ICMT", "n_seqs": 922, "length": 96, "gap_rates": [0.7158351409978309, 0.4804772234273319, 0.2982646420824295, 0.1984815618221258, 0.14859002169197397, 0.12364425162689804, 0.10737527114967461, 0.1019522776572668, 0.09544468546637744, 0.0911062906724512, 0.08351409978308026, 0.07809110629067245, 0.0770065075921909, 0.06941431670281996, 0.06399132321041215, 0.06073752711496746, 0.0596529284164859, 0.06182212581344902, 0.0509761388286334, 0.0455531453362256, 0.031453362255965296, 0.027114967462039046, 0.027114967462039046, 0.027114967462039046, 0.03253796095444685, 0.02928416485900217, 0.027114967462039046, 0.02928416485900217, 0.6431670281995662, 0.6377440347071583, 0.033622559652928416, 0.021691973969631236, 0.01193058568329718, 0.010845986984815618, 0.009761388286334056, 0.005422993492407809, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.007592190889370932, 0.007592190889370932, 0.010845986984815618, 0.010845986984815618, 0.01193058568329718, 0.01193058568329718, 0.01193058568329718, 0.013015184381778741, 0.013015184381778741, 0.014099783080260303, 0.014099783080260303, 0.2613882863340564, 0.028199566160520606, 0.02928416485900217, 0.055314533622559656, 0.06616052060737528, 0.06832971800433839, 0.06724511930585683, 0.09761388286334056, 0.11713665943600868, 0.10737527114967461, 0.12039045553145336, 0.13123644251626898, 0.1475054229934924, 0.1648590021691974, 0.1984815618221258, 0.6637744034707158, 0.6377440347071583, 0.23427331887201736, 0.2299349240780911, 0.23210412147505424, 0.23318872017353579, 0.23427331887201736, 0.23644251626898047, 0.23535791757049893, 0.25704989154013014, 0.24945770065075923, 0.2418655097613883, 0.2418655097613883, 0.24620390455531455, 0.2472885032537961, 0.24295010845986983, 0.5976138828633406, 0.24295010845986983, 0.24295010845986983, 0.2440347071583514, 0.24837310195227766, 0.25054229934924077, 0.2527114967462039, 0.25379609544468545, 0.27006507592190887, 0.2928416485900217, 0.2982646420824295, 0.4913232104121475, 0.9327548806941431], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IMP_cyclohyd.gap.json b/pfam_gap_rates/IMP_cyclohyd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91e0361960a68a8f381a5b3653495469b9c37385
--- /dev/null
+++ b/pfam_gap_rates/IMP_cyclohyd.gap.json
@@ -0,0 +1 @@
+{"family": "IMP_cyclohyd", "n_seqs": 199, "length": 221, "gap_rates": [0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.10552763819095477, 0.09547738693467336, 0.09547738693467336, 0.10050251256281408, 0.20100502512562815, 0.12060301507537688, 0.02512562814070352, 0.02512562814070352, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.9346733668341709, 0.914572864321608, 0.020100502512562814, 0.01507537688442211, 0.20100502512562815, 0.9447236180904522, 0.19095477386934673, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.020100502512562814, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.010050251256281407, 0.949748743718593, 0.010050251256281407, 0.01507537688442211, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.020100502512562814, 0.02512562814070352, 0.035175879396984924, 0.035175879396984924, 0.02512562814070352, 0.03015075376884422, 0.03015075376884422, 0.01507537688442211, 0.020100502512562814, 0.02512562814070352, 0.8693467336683417, 0.8693467336683417, 0.864321608040201, 0.8592964824120602, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.01507537688442211, 0.12060301507537688, 0.01507537688442211, 0.01507537688442211, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.2562814070351759, 0.34673366834170855, 0.2964824120603015, 0.16080402010050251, 0.020100502512562814, 0.06030150753768844, 0.02512562814070352, 0.9447236180904522, 0.9246231155778895, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.01507537688442211, 0.12060301507537688, 0.12060301507537688, 0.1407035175879397, 0.1658291457286432, 0.15577889447236182, 0.12060301507537688, 0.12060301507537688, 0.12060301507537688, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.06532663316582915, 0.020100502512562814, 0.16080402010050251, 0.09547738693467336, 0.07035175879396985, 0.06532663316582915, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.10050251256281408, 0.10552763819095477, 0.11557788944723618, 0.12060301507537688, 0.1306532663316583, 0.11557788944723618, 0.11557788944723618, 0.10050251256281408, 0.10050251256281408, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.01507537688442211, 0.020100502512562814, 0.7487437185929648, 0.04522613065326633, 0.04020100502512563, 0.04522613065326633, 0.04522613065326633, 0.04020100502512563, 0.02512562814070352, 0.020100502512562814, 0.020100502512562814, 0.02512562814070352, 0.02512562814070352, 0.02512562814070352, 0.09045226130653267, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.020100502512562814, 0.02512562814070352, 0.02512562814070352, 0.03015075376884422, 0.06030150753768844, 0.09045226130653267, 0.8844221105527639, 0.949748743718593], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IMS_C.gap.json b/pfam_gap_rates/IMS_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4ebd4159e569a61c881961500b5ef8c6e9ab233
--- /dev/null
+++ b/pfam_gap_rates/IMS_C.gap.json
@@ -0,0 +1 @@
+{"family": "IMS_C", "n_seqs": 3388, "length": 161, "gap_rates": [0.8730814639905549, 0.6883116883116883, 0.60271546635183, 0.5029515938606848, 0.36334120425029515, 0.2296340023612751, 0.14197166469893743, 0.08441558441558442, 0.048406139315230225, 0.029811097992916175, 0.02243211334120425, 0.01948051948051948, 0.018004722550177096, 0.017119244391971666, 0.016233766233766232, 0.015348288075560802, 0.01475796930342385, 0.01475796930342385, 0.015938606847697757, 0.7833530106257379, 0.13931523022432113, 0.1372491145218418, 0.09208972845336481, 0.9415584415584416, 0.6617473435655253, 0.08323494687131051, 0.1384297520661157, 0.03659976387249114, 0.8406139315230224, 0.930047225501771, 0.8822314049586777, 0.577331759149941, 0.03010625737898465, 0.026564344746162927, 0.024793388429752067, 0.010625737898465172, 0.00974025974025974, 0.00678866587957497, 0.004722550177095631, 0.004427390791027155, 0.004427390791027155, 0.004132231404958678, 0.004132231404958678, 0.004132231404958678, 0.004132231404958678, 0.004132231404958678, 0.004132231404958678, 0.004427390791027155, 0.005017709563164109, 0.008559622195985833, 0.007969303423848878, 0.0059031877213695395, 0.9244391971664699, 0.9451003541912633, 0.9409681227863046, 0.9111570247933884, 0.009445100354191263, 0.00678866587957497, 0.006198347107438017, 0.0035419126328217238, 0.003246753246753247, 0.004722550177095631, 0.004427390791027155, 0.0029515938606847697, 0.0029515938606847697, 0.003246753246753247, 0.010625737898465172, 0.03689492325855962, 0.02036599763872491, 0.7603305785123967, 0.7789256198347108, 0.8102125147579693, 0.8468122786304605, 0.8580283353010626, 0.865112160566706, 0.8733766233766234, 0.890495867768595, 0.9465761511216056, 0.9492325855962219, 0.948051948051948, 0.9409681227863046, 0.8760330578512396, 0.8689492325855962, 0.8609799291617474, 0.8547815820543093, 0.8293978748524203, 0.7948642266824085, 0.7674144037780402, 0.7373081463990555, 0.023022432113341203, 0.06375442739079103, 0.04191263282172373, 0.8102125147579693, 0.8831168831168831, 0.9433293978748524, 0.9276859504132231, 0.8432703659976387, 0.24822904368358914, 0.02154663518299882, 0.02036599763872491, 0.011216056670602124, 0.011216056670602124, 0.016233766233766232, 0.022136953955135773, 0.022136953955135773, 0.9391971664698937, 0.9462809917355371, 0.9453955135773318, 0.9386068476977568, 0.02922077922077922, 0.11334120425029516, 0.9474616292798111, 0.04604486422668241, 0.032467532467532464, 0.01357733175914994, 0.012396694214876033, 0.011806375442739079, 0.012396694214876033, 0.01357733175914994, 0.013872491145218418, 0.015053128689492325, 0.013282172373081463, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012987012987012988, 0.01269185360094451, 0.012987012987012988, 0.07526564344746163, 0.06493506493506493, 0.024498229043683588, 0.04073199527744982, 0.05283353010625738, 0.7514757969303424, 0.9155844155844156, 0.9492325855962219, 0.9327036599763873, 0.820543093270366, 0.27508854781582054, 0.04073199527744982, 0.03040141676505313, 0.028630460448642266, 0.02833530106257379, 0.02833530106257379, 0.029811097992916175, 0.031582054309327035, 0.032467532467532464, 0.03394332939787485, 0.03541912632821724, 0.03984651711924439, 0.05489964580873672, 0.07260920897284534, 0.08234946871310507, 0.09002361275088548, 0.3462219598583235, 0.3872491145218418, 0.4495277449822904, 0.5791027154663518, 0.7077922077922078, 0.833530106257379, 0.9453955135773318], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IPK.gap.json b/pfam_gap_rates/IPK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f6cb64d83d22114a8b118255915bfaf8d514b2d
--- /dev/null
+++ b/pfam_gap_rates/IPK.gap.json
@@ -0,0 +1 @@
+{"family": "IPK", "n_seqs": 943, "length": 367, "gap_rates": [0.36903499469777307, 0.17179215270413573, 0.15800636267232238, 0.15270413573700956, 0.14316012725344646, 0.13997879109225875, 0.13997879109225875, 0.13679745493107104, 0.13043478260869565, 0.12937433722163308, 0.12301166489925769, 0.12195121951219512, 0.11983032873807, 0.11770943796394485, 0.11558854718981973, 0.11452810180275716, 0.11134676564156946, 0.11134676564156946, 0.11134676564156946, 0.11134676564156946, 0.10498409331919406, 0.10392364793213149, 0.10392364793213149, 0.10604453870625663, 0.11346765641569459, 0.11240721102863202, 0.11452810180275716, 0.11452810180275716, 0.11664899257688228, 0.11770943796394485, 0.11452810180275716, 0.8186638388123012, 0.8207847295864263, 0.8207847295864263, 0.8218451749734889, 0.8218451749734889, 0.8218451749734889, 0.8218451749734889, 0.8218451749734889, 0.8218451749734889, 0.8218451749734889, 0.8218451749734889, 0.8218451749734889, 0.8229056203605515, 0.8250265111346765, 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\ No newline at end of file
diff --git a/pfam_gap_rates/IP_trans.gap.json b/pfam_gap_rates/IP_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bbfff8039c027b37676b939690d46967e296139f
--- /dev/null
+++ b/pfam_gap_rates/IP_trans.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/IRF.gap.json b/pfam_gap_rates/IRF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7be68815930c7a3b255727da498680171e0f364
--- /dev/null
+++ b/pfam_gap_rates/IRF.gap.json
@@ -0,0 +1 @@
+{"family": "IRF", "n_seqs": 244, "length": 106, "gap_rates": [0.2336065573770492, 0.10655737704918032, 0.09016393442622951, 0.09016393442622951, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.07377049180327869, 0.06967213114754098, 0.06557377049180328, 0.06967213114754098, 0.0778688524590164, 0.06967213114754098, 0.06967213114754098, 0.06557377049180328, 0.06147540983606557, 0.06147540983606557, 0.06147540983606557, 0.06557377049180328, 0.06557377049180328, 0.06147540983606557, 0.06557377049180328, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.10655737704918032, 0.3319672131147541, 0.05737704918032787, 0.05737704918032787, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.04918032786885246, 0.040983606557377046, 0.040983606557377046, 0.020491803278688523, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.01639344262295082, 0.01639344262295082, 0.020491803278688523, 0.03278688524590164, 0.028688524590163935, 0.19672131147540983, 0.1598360655737705, 0.09016393442622951, 0.036885245901639344, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.028688524590163935, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.20491803278688525, 0.045081967213114756, 0.045081967213114756, 0.045081967213114756, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.05327868852459016, 0.06557377049180328, 0.6762295081967213], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IRK.gap.json b/pfam_gap_rates/IRK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9e9eb37f35df8eae63282273e3d574c31d9e89e
--- /dev/null
+++ b/pfam_gap_rates/IRK.gap.json
@@ -0,0 +1 @@
+{"family": "IRK", "n_seqs": 789, "length": 335, "gap_rates": [0.523447401774398, 0.41698352344740175, 0.4093789607097592, 0.3916349809885932, 0.38910012674271227, 0.38910012674271227, 0.38783269961977185, 0.3865652724968314, 0.38276299112801015, 0.38149556400506973, 0.38276299112801015, 0.37896070975918883, 0.3840304182509506, 0.38910012674271227, 0.38022813688212925, 0.37515842839036756, 0.36755386565272496, 0.3561470215462611, 0.4816223067173637, 0.33840304182509506, 0.32953105196451205, 0.3155893536121673, 0.311787072243346, 0.302915082382763, 0.2953105196451204, 0.2915082382762991, 0.2877059569074778, 0.28390367553865653, 0.27756653992395436, 0.27756653992395436, 0.2737642585551331, 0.2750316856780735, 0.2750316856780735, 0.2750316856780735, 0.2750316856780735, 0.2737642585551331, 0.27249683143219267, 0.2750316856780735, 0.2750316856780735, 0.27249683143219267, 0.27122940430925224, 0.27122940430925224, 0.26996197718631176, 0.2661596958174905, 0.2661596958174905, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ImcF-related_N.gap.json b/pfam_gap_rates/ImcF-related_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56be887da4104e5a032392b22b1e63ee3a6427e3
--- /dev/null
+++ b/pfam_gap_rates/ImcF-related_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ins_allergen_rp.gap.json b/pfam_gap_rates/Ins_allergen_rp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f04663c0e5ed8c8168f69e0cd2fb5a586dc886e
--- /dev/null
+++ b/pfam_gap_rates/Ins_allergen_rp.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Intg_mem_TP0381.gap.json b/pfam_gap_rates/Intg_mem_TP0381.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f92c0f110e0325623e75e4322608b7d41adcdaa7
--- /dev/null
+++ b/pfam_gap_rates/Intg_mem_TP0381.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Iron_transport.gap.json b/pfam_gap_rates/Iron_transport.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37cb795980c831979f9ea1dec9de36ad37d5f6bd
--- /dev/null
+++ b/pfam_gap_rates/Iron_transport.gap.json
@@ -0,0 +1 @@
+{"family": "Iron_transport", "n_seqs": 132, "length": 172, "gap_rates": [0.15151515151515152, 0.14393939393939395, 0.13636363636363635, 0.12121212121212122, 0.11363636363636363, 0.10606060606060606, 0.10606060606060606, 0.946969696969697, 0.10606060606060606, 0.14393939393939395, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.946969696969697, 0.946969696969697, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.10606060606060606, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.9393939393939394, 0.15151515151515152, 0.11363636363636363, 0.12121212121212122, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09848484848484848, 0.09848484848484848, 0.9393939393939394, 0.09848484848484848, 0.13636363636363635, 0.8333333333333334, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.08333333333333333, 0.08333333333333333, 0.07575757575757576, 0.07575757575757576, 0.946969696969697, 0.946969696969697, 0.06818181818181818, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.03787878787878788, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.05303030303030303, 0.045454545454545456, 0.946969696969697, 0.7878787878787878, 0.045454545454545456, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.030303030303030304, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.030303030303030304, 0.022727272727272728, 0.030303030303030304, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.06818181818181818, 0.8863636363636364, 0.045454545454545456, 0.030303030303030304, 0.022727272727272728, 0.9393939393939394, 0.9318181818181818, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.24242424242424243, 0.15151515151515152, 0.7121212121212122, 0.7196969696969697, 0.7045454545454546, 0.08333333333333333, 0.05303030303030303, 0.06060606060606061, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.08333333333333333, 0.09848484848484848, 0.10606060606060606, 0.09848484848484848, 0.09090909090909091, 0.6666666666666666, 0.9393939393939394, 0.946969696969697, 0.946969696969697, 0.9090909090909091, 0.6590909090909091, 0.07575757575757576, 0.07575757575757576, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.07575757575757576, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.8484848484848485, 0.08333333333333333, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.26515151515151514, 0.3560606060606061], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KCNQ_channel.gap.json b/pfam_gap_rates/KCNQ_channel.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f85eb6604f539310d46b115859f3378293c888a
--- /dev/null
+++ b/pfam_gap_rates/KCNQ_channel.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/K_oxygenase.gap.json b/pfam_gap_rates/K_oxygenase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22e50cab3b3a78db581819dfa2975436ab9d59c4
--- /dev/null
+++ b/pfam_gap_rates/K_oxygenase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Kazal_1.gap.json b/pfam_gap_rates/Kazal_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70063587ee2d986afedeb7b871a9d0ee5b9be697
--- /dev/null
+++ b/pfam_gap_rates/Kazal_1.gap.json
@@ -0,0 +1 @@
+{"family": "Kazal_1", "n_seqs": 916, "length": 62, "gap_rates": [0.7379912663755459, 0.732532751091703, 0.7139737991266376, 0.6812227074235808, 0.6266375545851528, 0.5665938864628821, 0.5403930131004366, 0.7827510917030568, 0.8799126637554585, 0.9334061135371179, 0.9061135371179039, 0.8471615720524017, 0.722707423580786, 0.2314410480349345, 0.05349344978165939, 0.048034934497816595, 0.9268558951965066, 0.8941048034934498, 0.03711790393013101, 0.03056768558951965, 0.024017467248908297, 0.008733624454148471, 0.0032751091703056767, 0.0, 0.0, 0.0, 0.006550218340611353, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001091703056768559, 0.002183406113537118, 0.015283842794759825, 0.12008733624454149, 0.8056768558951966, 0.8209606986899564, 0.8144104803493449, 0.5949781659388647, 0.14847161572052403, 0.33624454148471616, 0.3406113537117904, 0.33624454148471616, 0.36572052401746724, 0.8908296943231441, 0.37336244541484714, 0.3558951965065502, 0.3558951965065502, 0.34279475982532753, 0.36026200873362446, 0.361353711790393, 0.36790393013100436, 0.37882096069869, 0.3853711790393013, 0.39082969432314413, 0.3962882096069869, 0.39956331877729256, 0.4017467248908297, 0.4028384279475983], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KdpA.gap.json b/pfam_gap_rates/KdpA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b74a631b15eceda7a9bbe35db070a1bd66c95b8
--- /dev/null
+++ b/pfam_gap_rates/KdpA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/KdpD.gap.json b/pfam_gap_rates/KdpD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d08039dfcc8f0397fd2268b037ac272911242d72
--- /dev/null
+++ b/pfam_gap_rates/KdpD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Kelch_4.gap.json b/pfam_gap_rates/Kelch_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2c25d419b1b0b14df17df371d5efdabb6bcbde9
--- /dev/null
+++ b/pfam_gap_rates/Kelch_4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/KxDL.gap.json b/pfam_gap_rates/KxDL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15ab069fd19a8396d1932128093c816e2147af86
--- /dev/null
+++ b/pfam_gap_rates/KxDL.gap.json
@@ -0,0 +1 @@
+{"family": "KxDL", "n_seqs": 222, "length": 86, "gap_rates": [0.6171171171171171, 0.18018018018018017, 0.13513513513513514, 0.1036036036036036, 0.08558558558558559, 0.08558558558558559, 0.08558558558558559, 0.07657657657657657, 0.07657657657657657, 0.07657657657657657, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.05855855855855856, 0.02252252252252252, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.036036036036036036, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.08558558558558559, 0.09009009009009009, 0.0945945945945946, 0.1036036036036036, 0.11711711711711711, 0.13063063063063063, 0.13963963963963963, 0.14864864864864866, 0.14864864864864866, 0.1981981981981982, 0.22522522522522523], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/L51_S25_CI-B8.gap.json b/pfam_gap_rates/L51_S25_CI-B8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66bfa8973022474a17827fe0c5b7edf6cd353659
--- /dev/null
+++ b/pfam_gap_rates/L51_S25_CI-B8.gap.json
@@ -0,0 +1 @@
+{"family": "L51_S25_CI-B8", "n_seqs": 690, "length": 83, "gap_rates": [0.24347826086956523, 0.08405797101449275, 0.0463768115942029, 0.030434782608695653, 0.028985507246376812, 0.02463768115942029, 0.021739130434782608, 0.020289855072463767, 0.014492753623188406, 0.013043478260869565, 0.008695652173913044, 0.004347826086956522, 0.004347826086956522, 0.002898550724637681, 0.002898550724637681, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0014492753623188406, 0.002898550724637681, 0.8507246376811595, 0.004347826086956522, 0.010144927536231883, 0.008695652173913044, 0.042028985507246375, 0.008695652173913044, 0.9478260869565217, 0.9449275362318841, 0.008695652173913044, 0.010144927536231883, 0.014492753623188406, 0.010144927536231883, 0.011594202898550725, 0.013043478260869565, 0.015942028985507246, 0.021739130434782608, 0.03188405797101449, 0.042028985507246375, 0.9072463768115943, 0.9159420289855073, 0.9173913043478261, 0.9202898550724637, 0.9202898550724637, 0.9231884057971015, 0.9246376811594202, 0.9260869565217391, 0.9260869565217391, 0.9260869565217391, 0.9318840579710145, 0.9318840579710145, 0.9391304347826087, 0.9492753623188406, 0.946376811594203, 0.9333333333333333, 0.9318840579710145, 0.9304347826086956, 0.9260869565217391, 0.9260869565217391, 0.9246376811594202, 0.9231884057971015, 0.9217391304347826, 0.9202898550724637, 0.9188405797101449, 0.9159420289855073, 0.9144927536231884, 0.9, 0.04927536231884058, 0.05217391304347826, 0.05217391304347826, 0.06376811594202898, 0.06666666666666667, 0.07246376811594203, 0.07971014492753623, 0.09565217391304348, 0.13478260869565217, 0.1956521739130435, 0.32463768115942027, 0.8927536231884058], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LIM.gap.json b/pfam_gap_rates/LIM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cddc68fdddf11db773e474cb9dbc4a63b5fade13
--- /dev/null
+++ b/pfam_gap_rates/LIM.gap.json
@@ -0,0 +1 @@
+{"family": "LIM", "n_seqs": 5000, "length": 64, "gap_rates": [0.0612, 0.0594, 0.0544, 0.0534, 0.0532, 0.0512, 0.0508, 0.0494, 0.0482, 0.9322, 0.9434, 0.9208, 0.0922, 0.076, 0.0514, 0.045, 0.0606, 0.591, 0.3368, 0.0186, 0.0134, 0.0096, 0.0084, 0.0044, 0.0038, 0.0036, 0.0032, 0.0024, 0.002, 0.0016, 0.0008, 0.0008, 0.0012, 0.0024, 0.0028, 0.003, 0.0038, 0.0052, 0.0062, 0.0072, 0.0088, 0.0126, 0.1022, 0.9034, 0.686, 0.0418, 0.0248, 0.0258, 0.0322, 0.0386, 0.0414, 0.9226, 0.0428, 0.0454, 0.0464, 0.0472, 0.0494, 0.0602, 0.0838, 0.1742, 0.2406, 0.3544, 0.615, 0.9058], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRR_6.gap.json b/pfam_gap_rates/LRR_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64d47873e80bf94c3735185fb8de87fc49ca738b
--- /dev/null
+++ b/pfam_gap_rates/LRR_6.gap.json
@@ -0,0 +1 @@
+{"family": "LRR_6", "n_seqs": 5000, "length": 25, "gap_rates": [0.8286, 0.5164, 0.3534, 0.2198, 0.088, 0.0742, 0.1118, 0.0166, 0.0122, 0.0058, 0.0044, 0.0014, 0.0, 0.0018, 0.8398, 0.0042, 0.016, 0.0428, 0.0988, 0.137, 0.1622, 0.1986, 0.2324, 0.261, 0.5416], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LZ_Tnp_IS66.gap.json b/pfam_gap_rates/LZ_Tnp_IS66.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a38287a640afe85326770dc08befcbc40fc4bdf
--- /dev/null
+++ b/pfam_gap_rates/LZ_Tnp_IS66.gap.json
@@ -0,0 +1 @@
+{"family": "LZ_Tnp_IS66", "n_seqs": 587, "length": 99, "gap_rates": [0.6098807495741057, 0.1465076660988075, 0.09710391822827939, 0.03747870528109029, 0.02385008517887564, 0.015332197614991482, 0.013628620102214651, 0.01192504258943782, 0.008517887563884156, 0.008517887563884156, 0.0068143100511073255, 0.005110732538330494, 0.0034071550255536627, 0.0034071550255536627, 0.0034071550255536627, 0.0034071550255536627, 0.0034071550255536627, 0.0034071550255536627, 0.0034071550255536627, 0.9063032367972743, 0.9454855195911414, 0.778534923339012, 0.43270868824531517, 0.424190800681431, 0.10221465076660988, 0.07836456558773425, 0.018739352640545145, 0.013628620102214651, 0.01192504258943782, 0.010221465076660987, 0.0068143100511073255, 0.008517887563884156, 0.008517887563884156, 0.5894378194207837, 0.6848381601362862, 0.7666098807495741, 0.8194207836456558, 0.8722316865417377, 0.9369676320272572, 0.9267461669505963, 0.8449744463373083, 0.7887563884156729, 0.7240204429301533, 0.6388415672913118, 0.49744463373083475, 0.022146507666098807, 0.10902896081771721, 0.09710391822827939, 0.07666098807495741, 0.054514480408858604, 0.04599659284497445, 0.9352640545144804, 0.044293015332197615, 0.049403747870528106, 0.05281090289608177, 0.059625212947189095, 0.06984667802385008, 0.06984667802385008, 0.0817717206132879, 0.0919931856899489, 0.044293015332197615, 0.33560477001703576, 0.45826235093696766, 0.5724020442930153, 0.7325383304940375, 0.8637137989778535, 0.9182282793867121, 0.9318568994889267, 0.8909710391822828, 0.7938671209540034, 0.6439522998296422, 0.5229982964224872, 0.40034071550255534, 0.2981260647359455, 0.1686541737649063, 0.1260647359454855, 0.10902896081771721, 0.0868824531516184, 0.07155025553662692, 0.034071550255536626, 0.028960817717206135, 0.03236797274275979, 0.04599659284497445, 0.04258943781942078, 0.054514480408858604, 0.9352640545144804, 0.05792163543441227, 0.059625212947189095, 0.10051107325383304, 0.10732538330494037, 0.11754684838160136, 0.10902896081771721, 0.10902896081771721, 0.11073253833049404, 0.11073253833049404, 0.12265758091993186, 0.13969335604770017, 0.23850085178875638, 0.4991482112436116], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/L_HMGIC_fpl.gap.json b/pfam_gap_rates/L_HMGIC_fpl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..578d53e9dba936ad70aa44de13e37646b47023e8
--- /dev/null
+++ b/pfam_gap_rates/L_HMGIC_fpl.gap.json
@@ -0,0 +1 @@
+{"family": "L_HMGIC_fpl", "n_seqs": 307, "length": 213, "gap_rates": [0.5960912052117264, 0.41368078175895767, 0.30618892508143325, 0.2768729641693811, 0.2768729641693811, 0.2703583061889251, 0.254071661237785, 0.24429967426710097, 0.24429967426710097, 0.23127035830618892, 0.22149837133550487, 0.21498371335504887, 0.21498371335504887, 0.20195439739413681, 0.1986970684039088, 0.19543973941368079, 0.19543973941368079, 0.19218241042345277, 0.19218241042345277, 0.18892508143322476, 0.18566775244299674, 0.18241042345276873, 0.1791530944625407, 0.1758957654723127, 0.1758957654723127, 0.1758957654723127, 0.1758957654723127, 0.21498371335504887, 0.2280130293159609, 0.247557003257329, 0.4234527687296417, 0.7100977198697068, 0.742671009771987, 0.7654723127035831, 0.7850162866449512, 0.8371335504885994, 0.8631921824104235, 0.8925081433224755, 0.9413680781758957, 0.8990228013029316, 0.8892508143322475, 0.8534201954397395, 0.8273615635179153, 0.7687296416938111, 0.755700325732899, 0.7133550488599348, 0.6938110749185668, 0.2182410423452769, 0.20521172638436483, 0.1791530944625407, 0.16938110749185667, 0.16286644951140064, 0.15960912052117263, 0.1563517915309446, 0.1563517915309446, 0.1563517915309446, 0.1563517915309446, 0.16612377850162866, 0.16612377850162866, 0.1563517915309446, 0.1563517915309446, 0.6416938110749185, 0.6742671009771987, 0.755700325732899, 0.9185667752442996, 0.9315960912052117, 0.9315960912052117, 0.9218241042345277, 0.8306188925081434, 0.739413680781759, 0.6612377850162866, 0.5276872964169381, 0.36482084690553745, 0.30293159609120524, 0.2247557003257329, 0.21172638436482086, 0.20195439739413681, 0.18566775244299674, 0.16612377850162866, 0.16286644951140064, 0.15309446254071662, 0.15309446254071662, 0.15309446254071662, 0.15309446254071662, 0.1498371335504886, 0.1465798045602606, 0.3973941368078176, 0.16938110749185667, 0.1758957654723127, 0.17263843648208468, 0.16938110749185667, 0.1465798045602606, 0.1498371335504886, 0.15960912052117263, 0.18892508143322476, 0.1563517915309446, 0.8859934853420195, 0.9087947882736156, 0.8892508143322475, 0.8794788273615635, 0.14332247557003258, 0.15309446254071662, 0.13355048859934854, 0.13680781758957655, 0.13355048859934854, 0.14006514657980457, 0.14006514657980457, 0.14006514657980457, 0.14006514657980457, 0.14332247557003258, 0.13680781758957655, 0.13680781758957655, 0.13680781758957655, 0.13680781758957655, 0.6612377850162866, 0.14006514657980457, 0.14006514657980457, 0.14006514657980457, 0.13680781758957655, 0.14006514657980457, 0.13680781758957655, 0.13680781758957655, 0.14006514657980457, 0.14006514657980457, 0.13355048859934854, 0.13680781758957655, 0.13680781758957655, 0.14006514657980457, 0.14332247557003258, 0.5276872964169381, 0.498371335504886, 0.48534201954397393, 0.46254071661237783, 0.1498371335504886, 0.1237785016286645, 0.13029315960912052, 0.1270358306188925, 0.13029315960912052, 0.1270358306188925, 0.13029315960912052, 0.13029315960912052, 0.13029315960912052, 0.13029315960912052, 0.1270358306188925, 0.10749185667752444, 0.08794788273615635, 0.0781758957654723, 0.06514657980456026, 0.06188925081433225, 0.12052117263843648, 0.14332247557003258, 0.1563517915309446, 0.17263843648208468, 0.17263843648208468, 0.16938110749185667, 0.16938110749185667, 0.16938110749185667, 0.16938110749185667, 0.17263843648208468, 0.1758957654723127, 0.1791530944625407, 0.18566775244299674, 0.18566775244299674, 0.18892508143322476, 0.18892508143322476, 0.19543973941368079, 0.20195439739413681, 0.20195439739413681, 0.20846905537459284, 0.20846905537459284, 0.22149837133550487, 0.2182410423452769, 0.2899022801302932, 0.26058631921824105, 0.24429967426710097, 0.23127035830618892, 0.21498371335504887, 0.21498371335504887, 0.21498371335504887, 0.21498371335504887, 0.21172638436482086, 0.21172638436482086, 0.2182410423452769, 0.250814332247557, 0.25732899022801303, 0.26384364820846906, 0.28338762214983715, 0.28338762214983715, 0.28338762214983715, 0.28664495114006516, 0.28664495114006516, 0.2899022801302932, 0.2899022801302932, 0.2964169381107492, 0.39087947882736157, 0.39087947882736157, 0.39087947882736157, 0.495114006514658, 0.4234527687296417, 0.4006514657980456, 0.40716612377850164, 0.34201954397394135, 0.3257328990228013, 0.33876221498371334, 0.34201954397394135, 0.3583061889250814, 0.3811074918566775, 0.41368078175895767, 0.43973941368078173, 0.4560260586319218, 0.4723127035830619, 0.5179153094462541, 0.5667752442996743], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LacI.gap.json b/pfam_gap_rates/LacI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..686cbe466d2ccaedab6d9c866c1d990645d6a406
--- /dev/null
+++ b/pfam_gap_rates/LacI.gap.json
@@ -0,0 +1 @@
+{"family": "LacI", "n_seqs": 5000, "length": 48, "gap_rates": [0.308, 0.1288, 0.0758, 0.0434, 0.0276, 0.021, 0.02, 0.0196, 0.0164, 0.0136, 0.0126, 0.0086, 0.0068, 0.004, 0.0036, 0.0036, 0.0024, 0.0024, 0.0026, 0.0008, 0.002, 0.0018, 0.0184, 0.911, 0.8452, 0.006, 0.0016, 0.0014, 0.0006, 0.0004, 0.0004, 0.0004, 0.0004, 0.0004, 0.0004, 0.001, 0.0014, 0.0018, 0.0026, 0.0028, 0.003, 0.0046, 0.0054, 0.01, 0.014, 0.0424, 0.1652, 0.2376], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lactate_perm.gap.json b/pfam_gap_rates/Lactate_perm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9546cb76de5efaa47d6de21f22226906590dddd8
--- /dev/null
+++ b/pfam_gap_rates/Lactate_perm.gap.json
@@ -0,0 +1 @@
+{"family": "Lactate_perm", "n_seqs": 808, "length": 583, "gap_rates": [0.629950495049505, 0.45792079207920794, 0.2685643564356436, 0.19925742574257427, 0.1745049504950495, 0.16831683168316833, 0.1646039603960396, 0.16212871287128713, 0.1608910891089109, 0.1608910891089109, 0.1608910891089109, 0.1608910891089109, 0.16212871287128713, 0.15841584158415842, 0.15717821782178218, 0.15841584158415842, 0.15594059405940594, 0.15594059405940594, 0.15965346534653466, 0.1547029702970297, 0.1547029702970297, 0.15222772277227722, 0.15222772277227722, 0.15099009900990099, 0.15099009900990099, 0.15222772277227722, 0.15222772277227722, 0.15222772277227722, 0.15099009900990099, 0.14727722772277227, 0.14727722772277227, 0.14727722772277227, 0.1485148514851485, 0.1485148514851485, 0.14727722772277227, 0.1448019801980198, 0.14356435643564355, 0.14356435643564355, 0.14356435643564355, 0.1448019801980198, 0.14356435643564355, 0.14603960396039603, 0.1448019801980198, 0.14356435643564355, 0.13985148514851486, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LamB.gap.json b/pfam_gap_rates/LamB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad7aaa839459097cb0a2b6fb85598574016c0a8a
--- /dev/null
+++ b/pfam_gap_rates/LamB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Lamp.gap.json b/pfam_gap_rates/Lamp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4d1cb16ada22bae216178a54b54c249d1566600
--- /dev/null
+++ b/pfam_gap_rates/Lamp.gap.json
@@ -0,0 +1 @@
+{"family": "Lamp", "n_seqs": 250, "length": 394, "gap_rates": [0.896, 0.868, 0.856, 0.844, 0.832, 0.828, 0.824, 0.816, 0.808, 0.804, 0.804, 0.788, 0.788, 0.792, 0.784, 0.78, 0.78, 0.78, 0.784, 0.788, 0.784, 0.784, 0.788, 0.796, 0.796, 0.804, 0.944, 0.788, 0.784, 0.784, 0.78, 0.78, 0.784, 0.788, 0.788, 0.788, 0.796, 0.796, 0.792, 0.792, 0.8, 0.8, 0.78, 0.78, 0.78, 0.76, 0.76, 0.752, 0.744, 0.736, 0.728, 0.716, 0.712, 0.708, 0.712, 0.668, 0.664, 0.664, 0.66, 0.66, 0.66, 0.656, 0.648, 0.644, 0.636, 0.64, 0.636, 0.636, 0.64, 0.624, 0.62, 0.628, 0.896, 0.616, 0.608, 0.6, 0.6, 0.592, 0.584, 0.584, 0.576, 0.572, 0.58, 0.572, 0.564, 0.544, 0.544, 0.54, 0.552, 0.572, 0.556, 0.572, 0.66, 0.648, 0.652, 0.632, 0.592, 0.888, 0.944, 0.932, 0.856, 0.656, 0.82, 0.9, 0.94, 0.912, 0.88, 0.788, 0.536, 0.5, 0.448, 0.436, 0.424, 0.404, 0.404, 0.632, 0.436, 0.9, 0.872, 0.512, 0.468, 0.408, 0.376, 0.372, 0.388, 0.928, 0.5, 0.324, 0.284, 0.248, 0.248, 0.244, 0.216, 0.2, 0.196, 0.192, 0.196, 0.2, 0.2, 0.2, 0.816, 0.196, 0.188, 0.828, 0.172, 0.164, 0.164, 0.164, 0.164, 0.164, 0.152, 0.152, 0.156, 0.152, 0.152, 0.152, 0.208, 0.232, 0.22, 0.216, 0.224, 0.304, 0.248, 0.224, 0.236, 0.228, 0.2, 0.168, 0.172, 0.916, 0.944, 0.932, 0.892, 0.156, 0.172, 0.168, 0.156, 0.196, 0.164, 0.164, 0.228, 0.18, 0.192, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.916, 0.816, 0.144, 0.148, 0.156, 0.144, 0.92, 0.144, 0.136, 0.844, 0.92, 0.936, 0.936, 0.912, 0.844, 0.14, 0.14, 0.136, 0.128, 0.136, 0.136, 0.128, 0.74, 0.896, 0.948, 0.852, 0.56, 0.12, 0.12, 0.116, 0.116, 0.116, 0.116, 0.116, 0.944, 0.948, 0.948, 0.944, 0.944, 0.368, 0.9, 0.948, 0.912, 0.884, 0.328, 0.148, 0.12, 0.864, 0.928, 0.948, 0.904, 0.856, 0.12, 0.12, 0.124, 0.12, 0.12, 0.116, 0.12, 0.12, 0.116, 0.12, 0.124, 0.116, 0.124, 0.192, 0.472, 0.564, 0.668, 0.904, 0.924, 0.728, 0.588, 0.536, 0.412, 0.22, 0.176, 0.156, 0.144, 0.18, 0.176, 0.132, 0.116, 0.108, 0.108, 0.124, 0.096, 0.1, 0.1, 0.156, 0.144, 0.136, 0.12, 0.084, 0.928, 0.936, 0.936, 0.92, 0.084, 0.084, 0.084, 0.08, 0.076, 0.072, 0.068, 0.068, 0.068, 0.22, 0.068, 0.068, 0.068, 0.072, 0.068, 0.064, 0.064, 0.068, 0.08, 0.644, 0.696, 0.832, 0.928, 0.944, 0.912, 0.72, 0.656, 0.632, 0.072, 0.06, 0.056, 0.052, 0.052, 0.052, 0.052, 0.052, 0.052, 0.052, 0.052, 0.052, 0.052, 0.052, 0.056, 0.056, 0.064, 0.628, 0.06, 0.056, 0.068, 0.068, 0.064, 0.924, 0.944, 0.884, 0.068, 0.064, 0.064, 0.064, 0.064, 0.068, 0.072, 0.072, 0.096, 0.128, 0.692, 0.228, 0.848, 0.852, 0.848, 0.16, 0.136, 0.136, 0.14, 0.144, 0.196, 0.16, 0.16, 0.16, 0.16, 0.164, 0.16, 0.16, 0.164, 0.16, 0.16, 0.16, 0.164, 0.164, 0.168, 0.168, 0.168, 0.18, 0.196, 0.2, 0.204, 0.244, 0.3, 0.344, 0.816, 0.452, 0.44, 0.44, 0.44, 0.452, 0.536, 0.736], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lant_dehydr_C.gap.json b/pfam_gap_rates/Lant_dehydr_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d359696c252d443b21c5f52afac44116ad0c0c0
--- /dev/null
+++ b/pfam_gap_rates/Lant_dehydr_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LapD_MoxY_N.gap.json b/pfam_gap_rates/LapD_MoxY_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f26fa5f0ce96c98cfebb59a554683ec54ffeaee4
--- /dev/null
+++ b/pfam_gap_rates/LapD_MoxY_N.gap.json
@@ -0,0 +1 @@
+{"family": "LapD_MoxY_N", "n_seqs": 153, "length": 127, "gap_rates": [0.7777777777777778, 0.4117647058823529, 0.20261437908496732, 0.1437908496732026, 0.12418300653594772, 0.1111111111111111, 0.10457516339869281, 0.09803921568627451, 0.0915032679738562, 0.08496732026143791, 0.08496732026143791, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.9411764705882353, 0.45098039215686275, 0.3790849673202614, 0.06535947712418301, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.0457516339869281, 0.05228758169934641, 0.0457516339869281, 0.05228758169934641, 0.0392156862745098, 0.0392156862745098, 0.0457516339869281, 0.0392156862745098, 0.032679738562091505, 0.032679738562091505, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.05228758169934641, 0.026143790849673203, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.013071895424836602, 0.013071895424836602, 0.9215686274509803, 0.7973856209150327, 0.058823529411764705, 0.026143790849673203, 0.0196078431372549, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.013071895424836602, 0.0196078431372549, 0.026143790849673203, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.032679738562091505], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ldl_recept_a.gap.json b/pfam_gap_rates/Ldl_recept_a.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2bebb4e6ac6b941c30b4427531b4c80a1702a4ee
--- /dev/null
+++ b/pfam_gap_rates/Ldl_recept_a.gap.json
@@ -0,0 +1 @@
+{"family": "Ldl_recept_a", "n_seqs": 5000, "length": 42, "gap_rates": [0.8914, 0.3266, 0.0938, 0.0934, 0.8876, 0.1022, 0.0642, 0.0376, 0.022, 0.0146, 0.011, 0.0108, 0.009, 0.0088, 0.0022, 0.934, 0.6888, 0.0012, 0.0004, 0.0004, 0.0004, 0.0002, 0.0002, 0.0, 0.0, 0.0, 0.0002, 0.0, 0.0002, 0.0002, 0.0004, 0.0012, 0.0018, 0.0024, 0.0034, 0.0038, 0.0068, 0.8712, 0.777, 0.036, 0.141, 0.1572], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LexA_DNA_bind.gap.json b/pfam_gap_rates/LexA_DNA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b340c7c7d2316b0d98c2c57e189041eaa9c5b56f
--- /dev/null
+++ b/pfam_gap_rates/LexA_DNA_bind.gap.json
@@ -0,0 +1 @@
+{"family": "LexA_DNA_bind", "n_seqs": 1807, "length": 65, "gap_rates": [0.7470946319867183, 0.5744327614831212, 0.3514111787493083, 0.14388489208633093, 0.11234089651355839, 0.058107360265633644, 0.03431101272827892, 0.032097399003873824, 0.026009961261759824, 0.02213613724405091, 0.018815716657443277, 0.014388489208633094, 0.014388489208633094, 0.012174875484228001, 0.01162147205312673, 0.011068068622025456, 0.012728278915329275, 0.013281682346430549, 0.016602102933038185, 0.010514665190924184, 0.014388489208633094, 0.010514665190924184, 0.008301051466519093, 0.004427227448810182, 0.00387382401770891, 0.00387382401770891, 0.002767017155506364, 0.002767017155506364, 0.002213613724405091, 0.0016602102933038186, 0.0016602102933038186, 0.002213613724405091, 0.002213613724405091, 0.002213613724405091, 0.0016602102933038186, 0.0016602102933038186, 0.008301051466519093, 0.002213613724405091, 0.05257332595462092, 0.002213613724405091, 0.003320420586607637, 0.003320420586607637, 0.003320420586607637, 0.003320420586607637, 0.004427227448810182, 0.00387382401770891, 0.00387382401770891, 0.00387382401770891, 0.004427227448810182, 0.004427227448810182, 0.004427227448810182, 0.005534034311012728, 0.005534034311012728, 0.005534034311012728, 0.005534034311012728, 0.005534034311012728, 0.00774764803541782, 0.013281682346430549, 0.022689540675152185, 0.036524626452684006, 0.053126729385722195, 0.07249584947426674, 0.07969009407858328, 0.08190370780298838, 0.21693414499169894], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipase3_N.gap.json b/pfam_gap_rates/Lipase3_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fb8fbd53dfda4c9988f0326b0537ab63b5c82e4
--- /dev/null
+++ b/pfam_gap_rates/Lipase3_N.gap.json
@@ -0,0 +1 @@
+{"family": "Lipase3_N", "n_seqs": 165, "length": 81, "gap_rates": [0.6787878787878788, 0.2727272727272727, 0.23030303030303031, 0.18787878787878787, 0.18181818181818182, 0.14545454545454545, 0.12727272727272726, 0.11515151515151516, 0.09696969696969697, 0.09090909090909091, 0.08484848484848485, 0.08484848484848485, 0.07878787878787878, 0.07272727272727272, 0.07272727272727272, 0.06666666666666667, 0.593939393939394, 0.5757575757575758, 0.5696969696969697, 0.5333333333333333, 0.5333333333333333, 0.5151515151515151, 0.01818181818181818, 0.01818181818181818, 0.012121212121212121, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4909090909090909, 0.6909090909090909, 0.6848484848484848, 0.2, 0.12121212121212122, 0.024242424242424242, 0.01818181818181818, 0.006060606060606061, 0.012121212121212121, 0.012121212121212121, 0.01818181818181818, 0.03636363636363636, 0.03636363636363636, 0.030303030303030304, 0.048484848484848485, 0.04242424242424243, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.07878787878787878, 0.09696969696969697, 0.7333333333333333, 0.7454545454545455, 0.7333333333333333, 0.7333333333333333, 0.07878787878787878, 0.09090909090909091, 0.09090909090909091, 0.10303030303030303, 0.10303030303030303, 0.12121212121212122, 0.12727272727272726, 0.14545454545454545, 0.44242424242424244, 0.22424242424242424, 0.26666666666666666, 0.4303030303030303, 0.43636363636363634, 0.8606060606060606], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipase_2.gap.json b/pfam_gap_rates/Lipase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc5aaab9dec903cb5713a4c0ce7f6d1fc893b4e5
--- /dev/null
+++ b/pfam_gap_rates/Lipase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Lipase_2", "n_seqs": 437, "length": 269, "gap_rates": [0.7848970251716247, 0.2379862700228833, 0.17162471395881007, 0.16933638443935928, 0.16933638443935928, 0.16933638443935928, 0.16933638443935928, 0.16933638443935928, 0.16704805491990846, 0.16704805491990846, 0.17848970251716248, 0.7940503432494279, 0.7940503432494279, 0.7963386727688787, 0.9496567505720824, 0.8787185354691075, 0.7963386727688787, 0.7940503432494279, 0.7940503432494279, 0.16933638443935928, 0.43249427917620137, 0.16475972540045766, 0.16704805491990846, 0.16704805491990846, 0.15560640732265446, 0.15560640732265446, 0.15560640732265446, 0.15560640732265446, 0.15102974828375287, 0.14645308924485126, 0.14645308924485126, 0.14416475972540047, 0.14187643020594964, 0.13958810068649885, 0.13501144164759726, 0.13501144164759726, 0.13501144164759726, 0.16018306636155608, 0.13958810068649885, 0.35697940503432496, 0.4782608695652174, 0.4668192219679634, 0.2402745995423341, 0.13729977116704806, 0.13729977116704806, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Lipase_3.gap.json b/pfam_gap_rates/Lipase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70a045d19ae41ab0d934c0ec8db29990b808ff86
--- /dev/null
+++ b/pfam_gap_rates/Lipase_3.gap.json
@@ -0,0 +1 @@
+{"family": "Lipase_3", "n_seqs": 3702, "length": 194, "gap_rates": [0.5218800648298217, 0.29848730415991354, 0.2847109670448406, 0.27741761210156674, 0.27228525121555913, 0.2671528903295516, 0.2660723933009184, 0.26580226904376014, 0.8300918422474338, 0.8130740140464614, 0.26580226904376014, 0.26499189627228525, 0.2625607779578606, 0.2593192868719611, 0.25742841707185304, 0.2552674230145867, 0.25391680172879527, 0.25364667747163694, 0.2520259319286872, 0.24959481361426256, 0.2485143165856294, 0.24662344678552134, 0.24527282549972987, 0.24581307401404645, 0.24473257698541329, 0.244462452728255, 0.24257158292814696, 0.2441923284710967, 0.31766612641815234, 0.4521880064829822, 0.4273365748244192, 0.42409508373851973, 0.6482982171799028, 0.7306861156131821, 0.8173960021609941, 0.8565640194489466, 0.9003241491085899, 0.9159913560237709, 0.9265262020529443, 0.9459751485683414, 0.9386817936250675, 0.9205834683954619, 0.9084278768233387, 0.8862776877363587, 0.8390059427336575, 0.7882225823878984, 0.6823338735818476, 0.5934629929767693, 0.23149648838465695, 0.19692058346839547, 0.19043760129659643, 0.18530524041058888, 0.1809832522960562, 0.17585089141004862, 0.17423014586709887, 0.17152890329551593, 0.16963803349540788, 0.16828741220961643, 0.16612641815235007, 0.16666666666666666, 0.1542409508373852, 0.7412209616423555, 0.7752566180443003, 0.7882225823878984, 0.8184764991896273, 0.8344138303619665, 0.9092382495948136, 0.9246353322528363, 0.930848190167477, 0.9411129119394922, 0.9481361426256077, 0.9367909238249594, 0.9276066990815776, 0.9143706104808211, 0.9016747703943814, 0.8246893571042679, 0.8119935170178282, 0.7806591031874662, 0.7595894111291194, 0.6990815775256618, 0.5988654781199352, 0.17828200972447325, 0.17152890329551593, 0.16396542409508374, 0.151269584008644, 0.11642355483522421, 0.10750945434900054, 0.09832522960561858, 0.08670988654781199, 0.08373851971907077, 0.08103727714748785, 0.08616963803349541, 0.08049702863317126, 0.9270664505672609, 0.07698541329011345, 0.07671528903295516, 0.07050243111831442, 0.06861156131820638, 0.06834143706104809, 0.06158833063209076, 0.7992976769313884, 0.9267963263101027, 0.8905996758508914, 0.7622906537007024, 0.1202052944354403, 0.08968125337655321, 0.052133981631550516, 0.03322528363047002, 0.031604538087520256, 0.030524041058887088, 0.030524041058887088, 0.02971366828741221, 0.02971366828741221, 0.029443544030253916, 0.026202052944354404, 0.025391680172879523, 0.026472177201512695, 0.025391680172879523, 0.025121555915721232, 0.02593192868719611, 0.026472177201512695, 0.02674230145867099, 0.02701242571582928, 0.02701242571582928, 0.04024851431658563, 0.06807131280388978, 0.08698001080497028, 0.09184224743381955, 0.097784981091302, 0.10210696920583469, 0.10696920583468396, 0.30307941653160453, 0.3038897893030794, 0.5094543490005402, 0.6834143706104808, 0.7941653160453809, 0.8849270664505673, 0.9251755807671529, 0.9405726634251755, 0.9000540248514317, 0.8568341437061048, 0.7612101566720691, 0.6293895191788222, 0.41869259859535385, 0.15153970826580226, 0.13695299837925445, 0.12830902215018908, 0.12587790383576444, 0.12452728254997299, 0.12128579146407348, 0.12182603997839006, 0.12263641274986493, 0.1242571582928147, 0.12587790383576444, 0.12614802809292275, 0.1350621285791464, 0.13776337115072934, 0.14397622906537008, 0.14775796866558616, 0.14829821717990274, 0.1501890869800108, 0.151269584008644, 0.151269584008644, 0.15180983252296057, 0.15370070232306862, 0.15721231766612642, 0.1574824419232847, 0.3749324689357104, 0.38303619665045924, 0.36682874122096165, 0.2895732036736899, 0.19881145326850352, 0.8770934629929767, 0.897622906537007, 0.7941653160453809, 0.49351701782820095, 0.20178282009724474, 0.18287412209616424, 0.18233387358184766, 0.18341437061048083, 0.1842247433819557, 0.18719611021069693, 0.18962722852512157, 0.19070772555375473, 0.19286871961102106, 0.1993517017828201, 0.20313344138303618, 0.21393841166936792, 0.2225823878984333, 0.24230145867098865, 0.31442463533225284, 0.39384116693679094, 0.6175040518638574, 0.930848190167477], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipoprotein_19.gap.json b/pfam_gap_rates/Lipoprotein_19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17bee64da58ce51815acbdbf7ed48660536a7734
--- /dev/null
+++ b/pfam_gap_rates/Lipoprotein_19.gap.json
@@ -0,0 +1 @@
+{"family": "Lipoprotein_19", "n_seqs": 116, "length": 56, "gap_rates": [0.9224137931034483, 0.47413793103448276, 0.25, 0.11206896551724138, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.034482758620689655, 0.034482758620689655, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.1896551724137931, 0.28448275862068967, 0.21551724137931033, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.0, 0.0, 0.16379310344827586, 0.09482758620689655, 0.017241379310344827, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.09482758620689655, 0.034482758620689655, 0.008620689655172414, 0.017241379310344827, 0.02586206896551724, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.034482758620689655, 0.05172413793103448, 0.09482758620689655, 0.14655172413793102, 0.3793103448275862], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LolA_like.gap.json b/pfam_gap_rates/LolA_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2335f4a2001a11fca43604dd53daa9397eecc91f
--- /dev/null
+++ b/pfam_gap_rates/LolA_like.gap.json
@@ -0,0 +1 @@
+{"family": "LolA_like", "n_seqs": 525, "length": 201, "gap_rates": [0.8457142857142858, 0.4438095238095238, 0.23809523809523808, 0.17523809523809525, 0.14666666666666667, 0.13333333333333333, 0.12, 0.11047619047619048, 0.10857142857142857, 0.10476190476190476, 0.10095238095238095, 0.09904761904761905, 0.1295238095238095, 0.13714285714285715, 0.09714285714285714, 0.09333333333333334, 0.09142857142857143, 0.08952380952380952, 0.08761904761904762, 0.0838095238095238, 0.0838095238095238, 0.0838095238095238, 0.08190476190476191, 0.5752380952380952, 0.8685714285714285, 0.8304761904761905, 0.5352380952380953, 0.5314285714285715, 0.4895238095238095, 0.4704761904761905, 0.06857142857142857, 0.06476190476190476, 0.06476190476190476, 0.06476190476190476, 0.06285714285714286, 0.06095238095238095, 0.06285714285714286, 0.06285714285714286, 0.06095238095238095, 0.05904761904761905, 0.05904761904761905, 0.05714285714285714, 0.05523809523809524, 0.05333333333333334, 0.05333333333333334, 0.05142857142857143, 0.05142857142857143, 0.047619047619047616, 0.25333333333333335, 0.9466666666666667, 0.24952380952380954, 0.2438095238095238, 0.05142857142857143, 0.047619047619047616, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.04, 0.04, 0.0380952380952381, 0.04, 0.15428571428571428, 0.05142857142857143, 0.045714285714285714, 0.045714285714285714, 0.04, 0.0380952380952381, 0.0380952380952381, 0.7295238095238096, 0.518095238095238, 0.03238095238095238, 0.03238095238095238, 0.024761904761904763, 0.022857142857142857, 0.02095238095238095, 0.017142857142857144, 0.015238095238095238, 0.013333333333333334, 0.015238095238095238, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.013333333333333334, 0.01904761904761905, 0.02095238095238095, 0.07238095238095238, 0.18476190476190477, 0.18666666666666668, 0.17904761904761904, 0.12, 0.940952380952381, 0.9485714285714286, 0.9447619047619048, 0.939047619047619, 0.017142857142857144, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.017142857142857144, 0.013333333333333334, 0.013333333333333334, 0.015238095238095238, 0.017142857142857144, 0.017142857142857144, 0.8952380952380953, 0.9219047619047619, 0.8819047619047619, 0.540952380952381, 0.08, 0.04, 0.03619047619047619, 0.030476190476190476, 0.02857142857142857, 0.022857142857142857, 0.02095238095238095, 0.017142857142857144, 0.01904761904761905, 0.015238095238095238, 0.015238095238095238, 0.015238095238095238, 0.02666666666666667, 0.01904761904761905, 0.013333333333333334, 0.015238095238095238, 0.03428571428571429, 0.013333333333333334, 0.013333333333333334, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.013333333333333334, 0.02095238095238095, 0.02095238095238095, 0.024761904761904763, 0.03238095238095238, 0.04, 0.022857142857142857, 0.030476190476190476, 0.03238095238095238, 0.03238095238095238, 0.030476190476190476, 0.030476190476190476, 0.030476190476190476, 0.03619047619047619, 0.03619047619047619, 0.0380952380952381, 0.05523809523809524, 0.045714285714285714, 0.047619047619047616, 0.05523809523809524, 0.05333333333333334, 0.8342857142857143, 0.05142857142857143, 0.9428571428571428, 0.05714285714285714, 0.9447619047619048, 0.06095238095238095, 0.06285714285714286, 0.06285714285714286, 0.06095238095238095, 0.06476190476190476, 0.06285714285714286, 0.06666666666666667, 0.06666666666666667, 0.07428571428571429, 0.07047619047619047, 0.06666666666666667, 0.6285714285714286, 0.08, 0.07047619047619047, 0.07047619047619047, 0.07047619047619047, 0.07428571428571429, 0.07428571428571429, 0.07428571428571429, 0.07809523809523809, 0.08, 0.07809523809523809, 0.07809523809523809, 0.08, 0.08190476190476191, 0.08190476190476191, 0.08190476190476191, 0.0838095238095238, 0.08571428571428572, 0.08571428571428572, 0.26285714285714284, 0.08761904761904762, 0.09142857142857143, 0.08761904761904762, 0.08761904761904762, 0.08761904761904762, 0.08761904761904762, 0.09523809523809523, 0.1180952380952381, 0.12761904761904763, 0.14285714285714285, 0.15047619047619049, 0.21904761904761905, 0.4838095238095238], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LppC.gap.json b/pfam_gap_rates/LppC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1c2e411abc8684b337244889df0a84278d57a9a
--- /dev/null
+++ b/pfam_gap_rates/LppC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LpxB.gap.json b/pfam_gap_rates/LpxB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9095b699177c492c261a350932913b465ffcd7b0
--- /dev/null
+++ b/pfam_gap_rates/LpxB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LpxC.gap.json b/pfam_gap_rates/LpxC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfa9b0a68e3a4b147981f523efbf1b43a67d03c8
--- /dev/null
+++ b/pfam_gap_rates/LpxC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LpxK.gap.json b/pfam_gap_rates/LpxK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7473c8b65aaade7456878778d31f579857865e26
--- /dev/null
+++ b/pfam_gap_rates/LpxK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LytR_C.gap.json b/pfam_gap_rates/LytR_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8db2db84af20d69ab89a83e85455fb61a3afed9c
--- /dev/null
+++ b/pfam_gap_rates/LytR_C.gap.json
@@ -0,0 +1 @@
+{"family": "LytR_C", "n_seqs": 1193, "length": 110, "gap_rates": [0.7820620284995808, 0.31181894383906117, 0.09639564124056998, 0.03352891869237217, 0.013411567476948869, 0.010058675607711651, 0.0075440067057837385, 0.006705783738474434, 0.006705783738474434, 0.006705783738474434, 0.006705783738474434, 0.009220452640402346, 0.005029337803855826, 0.005029337803855826, 0.005029337803855826, 0.005029337803855826, 0.004191114836546521, 0.002514668901927913, 0.0016764459346186086, 0.0016764459346186086, 0.0016764459346186086, 0.0008382229673093043, 0.0008382229673093043, 0.003352891869237217, 0.003352891869237217, 0.002514668901927913, 0.0008382229673093043, 0.003352891869237217, 0.8885163453478625, 0.002514668901927913, 0.0016764459346186086, 0.0008382229673093043, 0.0008382229673093043, 0.06873428331936295, 0.054484492875104776, 0.9497066219614417, 0.055322715842414084, 0.9446772841575859, 0.009220452640402346, 0.006705783738474434, 0.01173512154233026, 0.04442581726739313, 0.1550712489522213, 0.14920368818105617, 0.020955574182732608, 0.7460184409052808, 0.8583403185247276, 0.9471919530595139, 0.9086336965632859, 0.7929589270746018, 0.4702430846605197, 0.00586756077116513, 0.01173512154233026, 0.009220452640402346, 0.013411567476948869, 0.030176026823134954, 0.8281642917015927, 0.9178541492036881, 0.6546521374685667, 0.1969823973176865, 0.1550712489522213, 0.19362950544844929, 0.16177703269069574, 0.08633696563285834, 0.8424140821458508, 0.9446772841575859, 0.6739312657166806, 0.07879295892707461, 0.9488683989941324, 0.03436714165968147, 0.03101424979044426, 0.025146689019279127, 0.024308466051969825, 0.024308466051969825, 0.025146689019279127, 0.026823134953897737, 0.027661357921207042, 0.027661357921207042, 0.039396479463537304, 0.04777870913663034, 0.04107292539815591, 0.04274937133277452, 0.11986588432523052, 0.10477787091366303, 0.09220452640402348, 0.08633696563285834, 0.10226320201173512, 0.0972338642078793, 0.1173512154233026, 0.13160100586756077, 0.14668901927912825, 0.04777870913663034, 0.44677284157585917, 0.6923721709974854, 0.8340318524727578, 0.9128248113998324, 0.9321039396479464, 0.8801341156747695, 0.7837384744341995, 0.6127409891031014, 0.3034367141659681, 0.04777870913663034, 0.04945515507124895, 0.050293378038558254, 0.054484492875104776, 0.05951383067896061, 0.10058675607711651, 0.15423302598491198, 0.25901089689857504, 0.4098910310142498], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MA3.gap.json b/pfam_gap_rates/MA3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1b82dcbeb7b655fb823ef9583c4b1b3422d213b
--- /dev/null
+++ b/pfam_gap_rates/MA3.gap.json
@@ -0,0 +1 @@
+{"family": "MA3", "n_seqs": 1479, "length": 128, "gap_rates": [0.5321162947937795, 0.213657876943881, 0.14063556457065585, 0.10209601081812035, 0.08316430020283976, 0.07437457741717377, 0.06558485463150777, 0.05949966193373901, 0.05747126436781609, 0.05070993914807302, 0.048005409060175794, 0.04597701149425287, 0.04462474645030426, 0.4570655848546315, 0.45368492224476, 0.45233265720081134, 0.03515889114266396, 0.03313049357674104, 0.03110209601081812, 0.03110209601081812, 0.03110209601081812, 0.030425963488843813, 0.029749830966869506, 0.028397565922920892, 0.027721433400946585, 0.027721433400946585, 0.025016903313049357, 0.06017579445571332, 0.050033806626098715, 0.022988505747126436, 0.022988505747126436, 0.49628127112914133, 0.03110209601081812, 0.016903313049357674, 0.014198782961460446, 0.014874915483434753, 0.010818120351588911, 0.010818120351588911, 0.011494252873563218, 0.010818120351588911, 0.011494252873563218, 0.010818120351588911, 0.012170385395537525, 0.012170385395537525, 0.010818120351588911, 0.010818120351588911, 0.010818120351588911, 0.009465855307640297, 0.012170385395537525, 0.9195402298850575, 0.5273833671399595, 0.05611899932386748, 0.04597701149425287, 0.014198782961460446, 0.014874915483434753, 0.016227180527383367, 0.014198782961460446, 0.013522650439486139, 0.014198782961460446, 0.01555104800540906, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.013522650439486139, 0.012846517917511832, 0.013522650439486139, 0.22379986477349562, 0.034482758620689655, 0.03380662609871535, 0.038539553752535496, 0.027721433400946585, 0.0290736984448952, 0.0290736984448952, 0.030425963488843813, 0.0290736984448952, 0.030425963488843813, 0.030425963488843813, 0.029749830966869506, 0.03110209601081812, 0.03313049357674104, 0.03515889114266396, 0.03515889114266396, 0.03515889114266396, 0.036511156186612576, 0.03786342123056119, 0.0392156862745098, 0.04259634888438134, 0.04665314401622718, 0.04665314401622718, 0.050033806626098715, 0.052062204192021636, 0.054090601757944556, 0.05747126436781609, 0.9290060851926978, 0.9330628803245437, 0.933739012846518, 0.933739012846518, 0.9350912778904665, 0.9465855307640297, 0.9486139283299526, 0.9411764705882353, 0.9344151453684922, 0.933739012846518, 0.9330628803245437, 0.9330628803245437, 0.9283299526707235, 0.3698444895199459, 0.36375929682217717, 0.36105476673427994, 0.06355645706558485, 0.06152805949966193, 0.06355645706558485, 0.06423258958755916, 0.06693711967545639, 0.07302231237322515, 0.07978363759296822, 0.08181203515889114, 0.08316430020283976, 0.09330628803245436, 0.10074374577417174, 0.10480054090601758, 0.1162947937795808, 0.12440838404327248, 0.14063556457065585, 0.1649763353617309, 0.20148749154834347, 0.2718052738336714, 0.6991210277214334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MBD_C.gap.json b/pfam_gap_rates/MBD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..584c835106d5f0fb1195fde65376b9ecda949301
--- /dev/null
+++ b/pfam_gap_rates/MBD_C.gap.json
@@ -0,0 +1 @@
+{"family": "MBD_C", "n_seqs": 121, "length": 96, "gap_rates": [0.4214876033057851, 0.33884297520661155, 0.2892561983471074, 0.18181818181818182, 0.1487603305785124, 0.14049586776859505, 0.1322314049586777, 0.10743801652892562, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09090909090909091, 0.08264462809917356, 0.0743801652892562, 0.06611570247933884, 0.05785123966942149, 0.04132231404958678, 0.9421487603305785, 0.04132231404958678, 0.03305785123966942, 0.03305785123966942, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.9090909090909091, 0.03305785123966942, 0.9256198347107438, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.08264462809917356, 0.09090909090909091, 0.024793388429752067, 0.4049586776859504, 0.4049586776859504, 0.11570247933884298, 0.024793388429752067, 0.01652892561983471, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.03305785123966942, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.04132231404958678, 0.049586776859504134, 0.049586776859504134, 0.024793388429752067, 0.024793388429752067, 0.03305785123966942, 0.01652892561983471, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.05785123966942149, 0.024793388429752067, 0.03305785123966942, 0.03305785123966942, 0.03305785123966942, 0.03305785123966942, 0.03305785123966942, 0.05785123966942149, 0.05785123966942149, 0.05785123966942149, 0.05785123966942149, 0.05785123966942149, 0.05785123966942149, 0.05785123966942149, 0.06611570247933884, 0.0743801652892562, 0.0743801652892562, 0.0743801652892562, 0.08264462809917356, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09917355371900827, 0.30578512396694213], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MBF2.gap.json b/pfam_gap_rates/MBF2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a77c287b7821b882df495c8bc0410f20f962600d
--- /dev/null
+++ b/pfam_gap_rates/MBF2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MDM10.gap.json b/pfam_gap_rates/MDM10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b084e978ad53a12cfe53b8aa75fc3aee47d5c51d
--- /dev/null
+++ b/pfam_gap_rates/MDM10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MFMR_assoc.gap.json b/pfam_gap_rates/MFMR_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca650cc0f3dc42c2002dffafd5dce3928025bbce
--- /dev/null
+++ b/pfam_gap_rates/MFMR_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "MFMR_assoc", "n_seqs": 113, "length": 145, "gap_rates": [0.415929203539823, 0.24778761061946902, 0.23008849557522124, 0.22123893805309736, 0.20353982300884957, 0.19469026548672566, 0.19469026548672566, 0.19469026548672566, 0.17699115044247787, 0.17699115044247787, 0.4247787610619469, 0.23008849557522124, 0.18584070796460178, 0.168141592920354, 0.1415929203539823, 0.12389380530973451, 0.11504424778761062, 0.10619469026548672, 0.09734513274336283, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.061946902654867256, 0.07964601769911504, 0.39823008849557523, 0.7345132743362832, 0.2831858407079646, 0.07079646017699115, 0.07964601769911504, 0.04424778761061947, 0.017699115044247787, 0.0, 0.0, 0.02654867256637168, 0.0, 0.035398230088495575, 0.008849557522123894, 0.017699115044247787, 0.017699115044247787, 0.008849557522123894, 0.36283185840707965, 0.1504424778761062, 0.0, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017699115044247787, 0.8761061946902655, 0.008849557522123894, 0.008849557522123894, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.017699115044247787, 0.02654867256637168, 0.017699115044247787, 0.7433628318584071, 0.8672566371681416, 0.7876106194690266, 0.6902654867256637, 0.21238938053097345, 0.20353982300884957, 0.18584070796460178, 0.17699115044247787, 0.1415929203539823, 0.05309734513274336, 0.8495575221238938, 0.21238938053097345, 0.17699115044247787, 0.1415929203539823, 0.1504424778761062, 0.08849557522123894, 0.08849557522123894, 0.05309734513274336, 0.07079646017699115, 0.07079646017699115, 0.05309734513274336, 0.10619469026548672, 0.10619469026548672, 0.18584070796460178, 0.6371681415929203, 0.2743362831858407, 0.19469026548672566, 0.1415929203539823, 0.11504424778761062, 0.12389380530973451, 0.10619469026548672, 0.09734513274336283, 0.07964601769911504, 0.05309734513274336, 0.061946902654867256, 0.07079646017699115, 0.07079646017699115, 0.911504424778761, 0.05309734513274336, 0.061946902654867256, 0.05309734513274336, 0.22123893805309736, 0.22123893805309736, 0.21238938053097345, 0.25663716814159293, 0.05309734513274336, 0.9380530973451328, 0.9380530973451328, 0.05309734513274336, 0.05309734513274336, 0.035398230088495575, 0.05309734513274336, 0.02654867256637168, 0.035398230088495575, 0.04424778761061947, 0.04424778761061947, 0.061946902654867256, 0.07964601769911504, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07964601769911504, 0.08849557522123894, 0.09734513274336283, 0.11504424778761062, 0.17699115044247787, 0.3805309734513274, 0.4424778761061947, 0.5663716814159292, 0.6106194690265486], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MG1.gap.json b/pfam_gap_rates/MG1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92aff06038af3ba77fcf7ddb6634a2161e1e5a5b
--- /dev/null
+++ b/pfam_gap_rates/MG1.gap.json
@@ -0,0 +1 @@
+{"family": "MG1", "n_seqs": 405, "length": 121, "gap_rates": [0.18518518518518517, 0.04691358024691358, 0.044444444444444446, 0.04197530864197531, 0.04197530864197531, 0.019753086419753086, 0.01728395061728395, 0.01728395061728395, 0.01728395061728395, 0.014814814814814815, 0.014814814814814815, 0.8666666666666667, 0.014814814814814815, 0.014814814814814815, 0.012345679012345678, 0.012345679012345678, 0.9012345679012346, 0.009876543209876543, 0.009876543209876543, 0.009876543209876543, 0.009876543209876543, 0.007407407407407408, 0.007407407407407408, 0.0049382716049382715, 0.0024691358024691358, 0.0024691358024691358, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0049382716049382715, 0.0, 0.0024691358024691358, 0.0024691358024691358, 0.9481481481481482, 0.007407407407407408, 0.0, 0.0049382716049382715, 0.012345679012345678, 0.01728395061728395, 0.01728395061728395, 0.014814814814814815, 0.0024691358024691358, 0.0, 0.0, 0.0024691358024691358, 0.0024691358024691358, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0024691358024691358, 0.0024691358024691358, 0.0024691358024691358, 0.3728395061728395, 0.3333333333333333, 0.35555555555555557, 0.7802469135802469, 0.7975308641975308, 0.8567901234567902, 0.9037037037037037, 0.9333333333333333, 0.8765432098765432, 0.8246913580246914, 0.7876543209876543, 0.762962962962963, 0.4419753086419753, 0.3333333333333333, 0.3135802469135803, 0.20246913580246914, 0.027160493827160494, 0.027160493827160494, 0.027160493827160494, 0.02962962962962963, 0.027160493827160494, 0.027160493827160494, 0.027160493827160494, 0.02962962962962963, 0.03209876543209877, 0.928395061728395, 0.7135802469135802, 0.0345679012345679, 0.9358024691358025, 0.945679012345679, 0.9358024691358025, 0.9358024691358025, 0.03950617283950617, 0.04197530864197531, 0.04197530864197531, 0.04691358024691358, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.05185185185185185, 0.9358024691358025, 0.4691358024691358, 0.1654320987654321, 0.11604938271604938, 0.11358024691358025, 0.12345679012345678, 0.1308641975308642, 0.13333333333333333, 0.1382716049382716, 0.14320987654320988, 0.145679012345679, 0.1580246913580247, 0.16790123456790124, 0.17530864197530865, 0.18271604938271604, 0.22469135802469137, 0.31851851851851853, 0.5679012345679012], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MHC_II_beta.gap.json b/pfam_gap_rates/MHC_II_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..858b4b24287bde2a6d3448569f9a6786520ab43b
--- /dev/null
+++ b/pfam_gap_rates/MHC_II_beta.gap.json
@@ -0,0 +1 @@
+{"family": "MHC_II_beta", "n_seqs": 140, "length": 81, "gap_rates": [0.6928571428571428, 0.15714285714285714, 0.09285714285714286, 0.09285714285714286, 0.08571428571428572, 0.8428571428571429, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.17857142857142858, 0.09285714285714286, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02857142857142857, 0.02857142857142857, 0.03571428571428571, 0.03571428571428571, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02142857142857143, 0.9142857142857143, 0.9142857142857143, 0.9142857142857143, 0.9142857142857143, 0.9, 0.014285714285714285, 0.02857142857142857, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.09285714285714286, 0.05, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.02142857142857143, 0.02142857142857143, 0.02857142857142857, 0.02857142857142857, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.07142857142857142, 0.05, 0.05, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.07857142857142857, 0.18571428571428572, 0.5, 0.95], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MMM1.gap.json b/pfam_gap_rates/MMM1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a6b016b97ac4c8d5fe9f61444cce107fd2b459f
--- /dev/null
+++ b/pfam_gap_rates/MMM1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MNHE.gap.json b/pfam_gap_rates/MNHE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e8b3f9085d14cd0cb5f0810c9b4859dc5d00b6f
--- /dev/null
+++ b/pfam_gap_rates/MNHE.gap.json
@@ -0,0 +1 @@
+{"family": "MNHE", "n_seqs": 921, "length": 166, "gap_rates": [0.8360477741585234, 0.2747014115092291, 0.16069489685124863, 0.1259500542888165, 0.11509229098805646, 0.10966340933767643, 0.10640608034744843, 0.10532030401737243, 0.10423452768729642, 0.10314875135722042, 0.10314875135722042, 0.10206297502714441, 0.10206297502714441, 0.10097719869706841, 0.18132464712269272, 0.9370249728555917, 0.10640608034744843, 0.0998914223669924, 0.0988056460369164, 0.0988056460369164, 0.09663409337676439, 0.09229098805646037, 0.09229098805646037, 0.09120521172638436, 0.09120521172638436, 0.09120521172638436, 0.09120521172638436, 0.09229098805646037, 0.09120521172638436, 0.09011943539630836, 0.08903365906623235, 0.09011943539630836, 0.09011943539630836, 0.08903365906623235, 0.08903365906623235, 0.2269272529858849, 0.18892508143322476, 0.1791530944625407, 0.11726384364820847, 0.28230184581976114, 0.6916395222584147, 0.8154180238870793, 0.9348534201954397, 0.8653637350705755, 0.741585233441911, 0.44516829533116176, 0.249728555917481, 0.13137893593919653, 0.2725298588490771, 0.2714440825190011, 0.23452768729641693, 0.18023887079261672, 0.09771986970684039, 0.6851248642779587, 0.8631921824104235, 0.8946796959826275, 0.7969598262757872, 0.6188925081433225, 0.035830618892508145, 0.021715526601520086, 0.23669923995656894, 0.008686210640608035, 0.006514657980456026, 0.0054288816503800215, 0.0054288816503800215, 0.0054288816503800215, 0.0054288816503800215, 0.0054288816503800215, 0.0054288816503800215, 0.0054288816503800215, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.0054288816503800215, 0.0054288816503800215, 0.0054288816503800215, 0.0054288816503800215, 0.0054288816503800215, 0.0054288816503800215, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.04777415852334419, 0.05428881650380022, 0.05971769815418024, 0.8707926167209555, 0.02714440825190011, 0.00760043431053203, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.0054288816503800215, 0.008686210640608035, 0.010857763300760043, 0.011943539630836048, 0.008686210640608035, 0.009771986970684038, 0.00760043431053203, 0.006514657980456026, 0.008686210640608035, 0.006514657980456026, 0.0054288816503800215, 0.0054288816503800215, 0.004343105320304018, 0.004343105320304018, 0.004343105320304018, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.06188925081433225, 0.9478827361563518, 0.9446254071661238, 0.06514657980456026, 0.09011943539630836, 0.08469055374592833, 0.0249728555917481, 0.15526601520086863, 0.11292073832790445, 0.008686210640608035, 0.010857763300760043, 0.011943539630836048, 0.013029315960912053, 0.021715526601520086, 0.023887079261672096, 0.051031487513572206, 0.07057546145494029, 0.8371335504885994, 0.09771986970684039, 0.11509229098805646, 0.6905537459283387, 0.16178067318132464, 0.1498371335504886, 0.1487513572204126, 0.1444082519001086, 0.15200868621064062, 0.15743756786102062, 0.16395222584147665, 0.1737242128121607, 0.23778501628664495, 0.19001085776330076, 0.1986970684039088, 0.19218241042345277, 0.1997828447339848, 0.20955483170466885, 0.2290988056460369, 0.247557003257329, 0.30618892508143325, 0.3919652551574376, 0.5689467969598263], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MPP6.gap.json b/pfam_gap_rates/MPP6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09c3b5fd4e53ef049d84e17480c6d5e2f00a1991
--- /dev/null
+++ b/pfam_gap_rates/MPP6.gap.json
@@ -0,0 +1 @@
+{"family": "MPP6", "n_seqs": 180, "length": 233, "gap_rates": [0.8388888888888889, 0.28888888888888886, 0.17222222222222222, 0.15, 0.15, 0.14444444444444443, 0.14444444444444443, 0.14444444444444443, 0.14444444444444443, 0.1388888888888889, 0.12777777777777777, 0.11666666666666667, 0.06111111111111111, 0.06111111111111111, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05, 0.05, 0.05555555555555555, 0.05555555555555555, 0.05, 0.05, 0.05, 0.05, 0.06666666666666667, 0.07777777777777778, 0.07777777777777778, 0.6222222222222222, 0.6333333333333333, 0.7333333333333333, 0.7944444444444444, 0.8055555555555556, 0.8222222222222222, 0.8722222222222222, 0.8888888888888888, 0.9055555555555556, 0.9166666666666666, 0.9166666666666666, 0.9222222222222223, 0.9277777777777778, 0.9333333333333333, 0.9333333333333333, 0.9444444444444444, 0.9333333333333333, 0.9333333333333333, 0.9277777777777778, 0.9277777777777778, 0.9166666666666666, 0.9166666666666666, 0.9055555555555556, 0.8944444444444445, 0.8833333333333333, 0.8555555555555555, 0.8166666666666667, 0.7944444444444444, 0.7555555555555555, 0.6888888888888889, 0.17777777777777778, 0.18333333333333332, 0.15555555555555556, 0.12222222222222222, 0.12222222222222222, 0.12777777777777777, 0.12222222222222222, 0.10555555555555556, 0.1111111111111111, 0.1, 0.08888888888888889, 0.25, 0.2222222222222222, 0.20555555555555555, 0.18333333333333332, 0.17222222222222222, 0.16666666666666666, 0.18333333333333332, 0.18333333333333332, 0.18888888888888888, 0.2, 0.19444444444444445, 0.2, 0.3277777777777778, 0.22777777777777777, 0.6777777777777778, 0.7666666666666667, 0.8277777777777777, 0.8333333333333334, 0.8555555555555555, 0.8777777777777778, 0.8888888888888888, 0.9166666666666666, 0.9222222222222223, 0.9333333333333333, 0.9444444444444444, 0.9444444444444444, 0.95, 0.9444444444444444, 0.9388888888888889, 0.9333333333333333, 0.9166666666666666, 0.9, 0.8833333333333333, 0.8611111111111112, 0.8444444444444444, 0.8333333333333334, 0.7944444444444444, 0.7444444444444445, 0.6444444444444445, 0.06666666666666667, 0.08888888888888889, 0.08888888888888889, 0.08333333333333333, 0.08888888888888889, 0.08333333333333333, 0.08333333333333333, 0.08888888888888889, 0.10555555555555556, 0.07222222222222222, 0.6888888888888889, 0.7444444444444445, 0.7888888888888889, 0.8, 0.8333333333333334, 0.8666666666666667, 0.8833333333333333, 0.9111111111111111, 0.9388888888888889, 0.95, 0.9222222222222223, 0.9, 0.8777777777777778, 0.8444444444444444, 0.8111111111111111, 0.7944444444444444, 0.7666666666666667, 0.7333333333333333, 0.6444444444444445, 0.6, 0.5611111111111111, 0.5388888888888889, 0.4722222222222222, 0.08333333333333333, 0.07777777777777778, 0.03888888888888889, 0.03888888888888889, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.07222222222222222, 0.07222222222222222, 0.06111111111111111, 0.06111111111111111, 0.08888888888888889, 0.08333333333333333, 0.07222222222222222, 0.8444444444444444, 0.9222222222222223, 0.7333333333333333, 0.07222222222222222, 0.17222222222222222, 0.2833333333333333, 0.40555555555555556, 0.7055555555555556, 0.8222222222222222, 0.8611111111111112, 0.8833333333333333, 0.9055555555555556, 0.9388888888888889, 0.9444444444444444, 0.9444444444444444, 0.9222222222222223, 0.9, 0.8833333333333333, 0.8444444444444444, 0.7888888888888889, 0.5722222222222222, 0.34444444444444444, 0.23333333333333334, 0.12777777777777777, 0.022222222222222223, 0.11666666666666667, 0.10555555555555556, 0.10555555555555556, 0.1, 0.1, 0.10555555555555556, 0.10555555555555556, 0.12222222222222222, 0.13333333333333333, 0.1111111111111111, 0.9333333333333333, 0.95, 0.9388888888888889, 0.9111111111111111, 0.11666666666666667, 0.12777777777777777, 0.12222222222222222, 0.12222222222222222, 0.12777777777777777, 0.1388888888888889, 0.16111111111111112, 0.17222222222222222, 0.18888888888888888, 0.19444444444444445, 0.2111111111111111, 0.2111111111111111, 0.22777777777777777, 0.23333333333333334, 0.25, 0.5777777777777777, 0.5833333333333334, 0.5666666666666667, 0.8944444444444445, 0.8111111111111111, 0.38333333333333336, 0.4, 0.4, 0.42777777777777776, 0.4444444444444444, 0.4222222222222222, 0.4222222222222222, 0.4222222222222222, 0.4111111111111111, 0.43333333333333335, 0.4444444444444444, 0.4666666666666667, 0.4722222222222222, 0.5055555555555555, 0.5777777777777777, 0.6666666666666666, 0.8055555555555556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MR_MLE_N.gap.json b/pfam_gap_rates/MR_MLE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d083f78969b08ac1576c314cf0fc4b115c041386
--- /dev/null
+++ b/pfam_gap_rates/MR_MLE_N.gap.json
@@ -0,0 +1 @@
+{"family": "MR_MLE_N", "n_seqs": 3190, "length": 135, "gap_rates": [0.936050156739812, 0.9012539184952978, 0.8724137931034482, 0.8473354231974921, 0.8250783699059561, 0.8260188087774295, 0.7965517241379311, 0.7695924764890282, 0.7369905956112852, 0.7087774294670847, 0.7122257053291536, 0.6711598746081505, 0.7473354231974921, 0.6360501567398119, 0.6213166144200627, 0.6150470219435736, 0.6065830721003135, 0.5802507836990596, 0.5636363636363636, 0.5498432601880878, 0.5332288401253918, 0.5191222570532915, 0.4899686520376176, 0.44733542319749214, 0.37460815047021945, 0.29780564263322884, 0.2206896551724138, 0.12413793103448276, 0.06677115987460815, 0.05235109717868339, 0.05078369905956113, 0.042633228840125395, 0.03699059561128527, 0.1877742946708464, 0.03605015673981191, 0.030094043887147336, 0.03103448275862069, 0.03385579937304075, 0.025705329153605017, 0.02445141065830721, 0.025078369905956112, 0.02727272727272727, 0.03918495297805643, 0.044200626959247646, 0.05203761755485893, 0.04670846394984326, 0.041692789968652035, 0.03103448275862069, 0.5366771159874608, 0.7476489028213166, 0.8184952978056427, 0.9172413793103448, 0.8909090909090909, 0.7633228840125392, 0.7206896551724138, 0.27836990595611283, 0.22037617554858935, 0.16018808777429466, 0.1115987460815047, 0.04357366771159875, 0.04043887147335423, 0.041379310344827586, 0.03636363636363636, 0.03542319749216301, 0.035736677115987464, 0.038871473354231974, 0.2432601880877743, 0.031661442006269594, 0.024764890282131663, 0.022884012539184952, 0.0219435736677116, 0.0219435736677116, 0.023824451410658306, 0.02006269592476489, 0.01818181818181818, 0.016927899686520375, 0.02006269592476489, 0.018808777429467086, 0.021316614420062698, 0.024764890282131663, 0.021630094043887146, 0.01974921630094044, 0.017868338557993732, 0.018495297805642633, 0.018495297805642633, 0.01755485893416928, 0.018808777429467086, 0.023197492163009405, 0.03322884012539185, 0.022884012539184952, 0.021003134796238245, 0.01755485893416928, 0.010344827586206896, 0.3495297805642633, 0.3915360501567398, 0.6203761755485894, 0.8711598746081505, 0.8796238244514106, 0.8865203761755486, 0.8899686520376175, 0.8843260188087775, 0.8755485893416928, 0.815987460815047, 0.42225705329153607, 0.38181818181818183, 0.33887147335423196, 0.009717868338557993, 0.005329153605015674, 0.0040752351097178684, 0.005329153605015674, 0.0059561128526645765, 0.0040752351097178684, 0.003134796238244514, 0.003134796238244514, 0.003134796238244514, 0.003134796238244514, 0.003134796238244514, 0.003134796238244514, 0.003134796238244514, 0.003134796238244514, 0.003761755485893417, 0.0040752351097178684, 0.005642633228840125, 0.0059561128526645765, 0.006269592476489028, 0.007210031347962382, 0.008463949843260187, 0.0109717868338558, 0.012539184952978056, 0.01567398119122257, 0.01974921630094044, 0.026959247648902823, 0.04890282131661442, 0.064576802507837, 0.15893416927899687], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MSC.gap.json b/pfam_gap_rates/MSC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a9b89d67fc407f5d5d83b95e11127b329885999
--- /dev/null
+++ b/pfam_gap_rates/MSC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MS_channel.gap.json b/pfam_gap_rates/MS_channel.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6f4db9e2e437ec37355ece4080a49a061f45480
--- /dev/null
+++ b/pfam_gap_rates/MS_channel.gap.json
@@ -0,0 +1 @@
+{"family": "MS_channel", "n_seqs": 5000, "length": 235, "gap_rates": [0.6212, 0.3436, 0.2384, 0.18, 0.1188, 0.0806, 0.0632, 0.0552, 0.0464, 0.0422, 0.0396, 0.0386, 0.0382, 0.0368, 0.0362, 0.035, 0.0346, 0.0342, 0.0346, 0.0352, 0.0344, 0.0324, 0.9334, 0.8806, 0.036, 0.0308, 0.0302, 0.0288, 0.028, 0.0268, 0.0268, 0.0268, 0.0272, 0.0276, 0.0266, 0.0258, 0.025, 0.0242, 0.0238, 0.0278, 0.0228, 0.0224, 0.0218, 0.0216, 0.0206, 0.0204, 0.0198, 0.0192, 0.0186, 0.018, 0.0182, 0.0184, 0.0184, 0.0174, 0.021, 0.0234, 0.0188, 0.0164, 0.0162, 0.0162, 0.9392, 0.0152, 0.0146, 0.0142, 0.0142, 0.0142, 0.014, 0.0142, 0.0142, 0.014, 0.0142, 0.0138, 0.8188, 0.9118, 0.9478, 0.904, 0.7444, 0.0142, 0.0144, 0.0144, 0.014, 0.0136, 0.0132, 0.0132, 0.0136, 0.0126, 0.0126, 0.0128, 0.013, 0.0134, 0.0122, 0.012, 0.0122, 0.0134, 0.0146, 0.0142, 0.015, 0.0148, 0.0268, 0.0162, 0.0166, 0.0166, 0.0168, 0.0168, 0.0172, 0.0186, 0.02, 0.0208, 0.0224, 0.1776, 0.1802, 0.0342, 0.0378, 0.051, 0.058, 0.057, 0.0566, 0.0584, 0.939, 0.9204, 0.6628, 0.2456, 0.0774, 0.068, 0.0676, 0.0672, 0.0686, 0.0686, 0.069, 0.0692, 0.0702, 0.0708, 0.0706, 0.0712, 0.0724, 0.0718, 0.0798, 0.0738, 0.5806, 0.5302, 0.527, 0.0794, 0.077, 0.0772, 0.0778, 0.0784, 0.0786, 0.0786, 0.0784, 0.0814, 0.082, 0.0826, 0.083, 0.087, 0.0892, 0.0926, 0.0954, 0.1034, 0.1042, 0.108, 0.1532, 0.8674, 0.9078, 0.916, 0.9232, 0.9264, 0.9326, 0.9388, 0.9416, 0.945, 0.9494, 0.9478, 0.9434, 0.9394, 0.937, 0.9306, 0.925, 0.921, 0.9136, 0.8862, 0.7954, 0.259, 0.1902, 0.1662, 0.131, 0.1332, 0.1274, 0.1278, 0.1278, 0.13, 0.1318, 0.1336, 0.1344, 0.1346, 0.1366, 0.1374, 0.1402, 0.139, 0.1396, 0.1394, 0.1404, 0.1414, 0.1432, 0.146, 0.148, 0.1492, 0.153, 0.7392, 0.5522, 0.3754, 0.1818, 0.179, 0.184, 0.1864, 0.1874, 0.1898, 0.1922, 0.1948, 0.196, 0.1974, 0.1992, 0.2014, 0.2034, 0.2104, 0.2168, 0.2218, 0.2296, 0.2344, 0.2458, 0.2558, 0.2728, 0.2874, 0.3236, 0.3998, 0.607], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mac.gap.json b/pfam_gap_rates/Mac.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae0e361f0bed34c326e5976b57ee42c36adb4c74
--- /dev/null
+++ b/pfam_gap_rates/Mac.gap.json
@@ -0,0 +1 @@
+{"family": "Mac", "n_seqs": 1079, "length": 62, "gap_rates": [0.24930491195551435, 0.11121408711770157, 0.08433734939759036, 0.057460611677479144, 0.04170528266913809, 0.033364226135310475, 0.026876737720111215, 0.022242817423540315, 0.021316033364226137, 0.020389249304911955, 0.5430954587581094, 0.2789620018535681, 0.13531047265987026, 0.014828544949026877, 0.012974976830398516, 0.012974976830398516, 0.012048192771084338, 0.0074142724745134385, 0.006487488415199258, 0.0037071362372567192, 0.0037071362372567192, 0.0018535681186283596, 0.0018535681186283596, 0.0027803521779425394, 0.0018535681186283596, 0.0018535681186283596, 0.0009267840593141798, 0.0009267840593141798, 0.0018535681186283596, 0.0018535681186283596, 0.0027803521779425394, 0.013901760889712697, 0.8489341983317887, 0.056533827618164965, 0.9369786839666358, 0.9425393883225208, 0.9481000926784059, 0.9388322520852641, 0.9230769230769231, 0.13253012048192772, 0.08619091751621873, 0.06209453197405004, 0.9397590361445783, 0.9416126042632067, 0.9369786839666358, 0.026876737720111215, 0.028730305838739572, 0.028730305838739572, 0.026876737720111215, 0.03985171455050973, 0.03151065801668211, 0.03429101019462465, 0.03985171455050973, 0.05097312326227989, 0.057460611677479144, 0.061167747914735865, 0.06672845227062095, 0.08341056533827618, 0.15384615384615385, 0.2159406858202039, 0.2965708989805375, 0.41056533827618164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mago_nashi.gap.json b/pfam_gap_rates/Mago_nashi.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9522a9312f0be53c031280a3623a896cf8caae25
--- /dev/null
+++ b/pfam_gap_rates/Mago_nashi.gap.json
@@ -0,0 +1 @@
+{"family": "Mago_nashi", "n_seqs": 322, "length": 152, "gap_rates": [0.16149068322981366, 0.14906832298136646, 0.14596273291925466, 0.14285714285714285, 0.17080745341614906, 0.16459627329192547, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11490683229813664, 0.11490683229813664, 0.11180124223602485, 0.11180124223602485, 0.11180124223602485, 0.11180124223602485, 0.10869565217391304, 0.10869565217391304, 0.09316770186335403, 0.09316770186335403, 0.09627329192546584, 0.09627329192546584, 0.09316770186335403, 0.1956521739130435, 0.8757763975155279, 0.9409937888198758, 0.9440993788819876, 0.9409937888198758, 0.8726708074534162, 0.09006211180124224, 0.09006211180124224, 0.08695652173913043, 0.8726708074534162, 0.937888198757764, 0.937888198757764, 0.8726708074534162, 0.8726708074534162, 0.08385093167701864, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.07763975155279502, 0.07763975155279502, 0.07763975155279502, 0.07763975155279502, 0.07763975155279502, 0.07763975155279502, 0.07763975155279502, 0.059006211180124224, 0.059006211180124224, 0.062111801242236024, 0.062111801242236024, 0.052795031055900624, 0.052795031055900624, 0.052795031055900624, 0.052795031055900624, 0.049689440993788817, 0.046583850931677016, 0.049689440993788817, 0.052795031055900624, 0.046583850931677016, 0.049689440993788817, 0.049689440993788817, 0.046583850931677016, 0.046583850931677016, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.037267080745341616, 0.031055900621118012, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.031055900621118012, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.031055900621118012, 0.031055900621118012, 0.034161490683229816, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.040372670807453416, 0.040372670807453416, 0.037267080745341616, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.043478260869565216, 0.052795031055900624, 0.052795031055900624, 0.052795031055900624, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.059006211180124224, 0.055900621118012424, 0.055900621118012424, 0.062111801242236024, 0.06521739130434782, 0.07763975155279502, 0.07763975155279502, 0.08074534161490683, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08695652173913043, 0.09006211180124224, 0.09006211180124224, 0.09006211180124224, 0.09006211180124224, 0.08695652173913043, 0.09006211180124224, 0.09006211180124224, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.10248447204968944, 0.10559006211180125, 0.10559006211180125, 0.10869565217391304, 0.10559006211180125, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.11180124223602485, 0.11801242236024845, 0.12111801242236025, 0.13354037267080746, 0.17080745341614906, 0.19875776397515527, 0.2329192546583851], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Malic_M.gap.json b/pfam_gap_rates/Malic_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e35c71065fc9ee4454ac79db6836d2a3fbd0a4d
--- /dev/null
+++ b/pfam_gap_rates/Malic_M.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MannoseP_isomer.gap.json b/pfam_gap_rates/MannoseP_isomer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1cbb3838eeb4addfe3936154937cadb83c2f67f1
--- /dev/null
+++ b/pfam_gap_rates/MannoseP_isomer.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mannosyl_trans2.gap.json b/pfam_gap_rates/Mannosyl_trans2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83ac2d6bacb0ea388480482404528fe0ca08aec9
--- /dev/null
+++ b/pfam_gap_rates/Mannosyl_trans2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MaoC_dehydrat_N.gap.json b/pfam_gap_rates/MaoC_dehydrat_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2714cbc65a382497adfc6c846ac54e1cf51d142
--- /dev/null
+++ b/pfam_gap_rates/MaoC_dehydrat_N.gap.json
@@ -0,0 +1 @@
+{"family": "MaoC_dehydrat_N", "n_seqs": 1200, "length": 159, "gap_rates": [0.7358333333333333, 0.5925, 0.5375, 0.5208333333333334, 0.5208333333333334, 0.46416666666666667, 0.9083333333333333, 0.43166666666666664, 0.3983333333333333, 0.3616666666666667, 0.32166666666666666, 0.9441666666666667, 0.2783333333333333, 0.265, 0.2625, 0.2575, 0.25583333333333336, 0.25583333333333336, 0.25416666666666665, 0.25416666666666665, 0.25333333333333335, 0.25166666666666665, 0.24666666666666667, 0.24583333333333332, 0.24333333333333335, 0.23833333333333334, 0.23583333333333334, 0.23916666666666667, 0.23833333333333334, 0.9383333333333334, 0.24416666666666667, 0.2425, 0.245, 0.25083333333333335, 0.25833333333333336, 0.2425, 0.23666666666666666, 0.23833333333333334, 0.2425, 0.245, 0.3258333333333333, 0.5191666666666667, 0.5033333333333333, 0.4875, 0.4533333333333333, 0.42, 0.36083333333333334, 0.21, 0.17833333333333334, 0.1475, 0.1225, 0.1075, 0.10083333333333333, 0.1, 0.0975, 0.09583333333333334, 0.09583333333333334, 0.09166666666666666, 0.09083333333333334, 0.09, 0.08833333333333333, 0.8833333333333333, 0.9416666666666667, 0.915, 0.835, 0.08916666666666667, 0.14666666666666667, 0.31333333333333335, 0.6208333333333333, 0.8466666666666667, 0.9, 0.94, 0.95, 0.9241666666666667, 0.8825, 0.7691666666666667, 0.44583333333333336, 0.25666666666666665, 0.18166666666666667, 0.11333333333333333, 0.7133333333333334, 0.9458333333333333, 0.8983333333333333, 0.5816666666666667, 0.07583333333333334, 0.0625, 0.041666666666666664, 0.8841666666666667, 0.95, 0.9383333333333334, 0.8325, 0.0275, 0.02, 0.016666666666666666, 0.014166666666666666, 0.013333333333333334, 0.0125, 0.011666666666666667, 0.013333333333333334, 0.015, 0.01, 0.0075, 0.005833333333333334, 0.008333333333333333, 0.008333333333333333, 0.005833333333333334, 0.005833333333333334, 0.865, 0.8758333333333334, 0.8616666666666667, 0.008333333333333333, 0.006666666666666667, 0.005, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.005, 0.005, 0.004166666666666667, 0.004166666666666667, 0.005, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.0075, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.01, 0.9391666666666667, 0.0575, 0.43833333333333335, 0.4533333333333333, 0.7066666666666667, 0.5316666666666666, 0.20333333333333334, 0.11166666666666666, 0.025, 0.024166666666666666, 0.021666666666666667, 0.024166666666666666, 0.028333333333333332, 0.034166666666666665, 0.0425, 0.049166666666666664, 0.06166666666666667, 0.07333333333333333, 0.0875, 0.3491666666666667, 0.14166666666666666, 0.14833333333333334, 0.17416666666666666, 0.21666666666666667, 0.24916666666666668, 0.2866666666666667, 0.34833333333333333, 0.47], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mcp5_PH.gap.json b/pfam_gap_rates/Mcp5_PH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca4fd271016bc65832eb8758a281efa0354f5e3f
--- /dev/null
+++ b/pfam_gap_rates/Mcp5_PH.gap.json
@@ -0,0 +1 @@
+{"family": "Mcp5_PH", "n_seqs": 245, "length": 148, "gap_rates": [0.8448979591836735, 0.24897959183673468, 0.17959183673469387, 0.15510204081632653, 0.12244897959183673, 0.09387755102040816, 0.08979591836734693, 0.08163265306122448, 0.08163265306122448, 0.06938775510204082, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.061224489795918366, 0.05714285714285714, 0.053061224489795916, 0.053061224489795916, 0.053061224489795916, 0.04897959183673469, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.7959183673469388, 0.1836734693877551, 0.1836734693877551, 0.18775510204081633, 0.27346938775510204, 0.7387755102040816, 0.7387755102040816, 0.7387755102040816, 0.7428571428571429, 0.8489795918367347, 0.8857142857142857, 0.8979591836734694, 0.9061224489795918, 0.9224489795918367, 0.9346938775510204, 0.9469387755102041, 0.9306122448979591, 0.9224489795918367, 0.8979591836734694, 0.889795918367347, 0.8693877551020408, 0.763265306122449, 0.7387755102040816, 0.7387755102040816, 0.7387755102040816, 0.7387755102040816, 0.1836734693877551, 0.11836734693877551, 0.07346938775510205, 0.044897959183673466, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.0326530612244898, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.0326530612244898, 0.02857142857142857, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.11836734693877551, 0.08979591836734693, 0.07755102040816327, 0.07346938775510205, 0.044897959183673466, 0.05714285714285714, 0.061224489795918366, 0.04897959183673469, 0.036734693877551024, 0.02040816326530612, 0.0163265306122449, 0.02040816326530612, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.746938775510204, 0.0326530612244898, 0.0326530612244898, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.0326530612244898, 0.0326530612244898, 0.0326530612244898, 0.0326530612244898, 0.036734693877551024, 0.04081632653061224, 0.036734693877551024, 0.044897959183673466, 0.044897959183673466, 0.04081632653061224, 0.04081632653061224, 0.036734693877551024, 0.036734693877551024, 0.044897959183673466, 0.6081632653061224, 0.8285714285714286, 0.8612244897959184, 0.6979591836734694, 0.5836734693877551, 0.06938775510204082, 0.05714285714285714, 0.044897959183673466, 0.044897959183673466, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.04897959183673469, 0.053061224489795916, 0.05714285714285714, 0.08979591836734693, 0.2, 0.6857142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MecA_N.gap.json b/pfam_gap_rates/MecA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1eea8f384235e9d335fbc44391bb01a25e193ded
--- /dev/null
+++ b/pfam_gap_rates/MecA_N.gap.json
@@ -0,0 +1 @@
+{"family": "MecA_N", "n_seqs": 317, "length": 130, "gap_rates": [0.8107255520504731, 0.3438485804416404, 0.2302839116719243, 0.14195583596214512, 0.1167192429022082, 0.08517350157728706, 0.07570977917981073, 0.0694006309148265, 0.06624605678233439, 0.06624605678233439, 0.06624605678233439, 0.06624605678233439, 0.06624605678233439, 0.06624605678233439, 0.06624605678233439, 0.06624605678233439, 0.06624605678233439, 0.06309148264984227, 0.06309148264984227, 0.06309148264984227, 0.05993690851735016, 0.06309148264984227, 0.05993690851735016, 0.05993690851735016, 0.05993690851735016, 0.05993690851735016, 0.056782334384858045, 0.050473186119873815, 0.06309148264984227, 0.9369085173501577, 0.9116719242902208, 0.49842271293375395, 0.4921135646687697, 0.47634069400630913, 0.47318611987381703, 0.4637223974763407, 0.45425867507886436, 0.3785488958990536, 0.04416403785488959, 0.03470031545741325, 0.03470031545741325, 0.03470031545741325, 0.028391167192429023, 0.01892744479495268, 0.022082018927444796, 0.022082018927444796, 0.022082018927444796, 0.022082018927444796, 0.01892744479495268, 0.01892744479495268, 0.022082018927444796, 0.01892744479495268, 0.022082018927444796, 0.022082018927444796, 0.031545741324921134, 0.01892744479495268, 0.01892744479495268, 0.015772870662460567, 0.7665615141955836, 0.8832807570977917, 0.9305993690851735, 0.8201892744479495, 0.7318611987381703, 0.3028391167192429, 0.11356466876971609, 0.1167192429022082, 0.07886435331230283, 0.07255520504731862, 0.056782334384858045, 0.025236593059936908, 0.0473186119873817, 0.04100946372239748, 0.028391167192429023, 0.01892744479495268, 0.022082018927444796, 0.022082018927444796, 0.015772870662460567, 0.0031545741324921135, 0.006309148264984227, 0.015772870662460567, 0.015772870662460567, 0.00946372239747634, 0.006309148264984227, 0.006309148264984227, 0.012618296529968454, 0.015772870662460567, 0.015772870662460567, 0.01892744479495268, 0.025236593059936908, 0.022082018927444796, 0.012618296529968454, 0.7381703470031545, 0.9495268138801262, 0.7728706624605678, 0.6593059936908517, 0.13249211356466878, 0.015772870662460567, 0.01892744479495268, 0.006309148264984227, 0.006309148264984227, 0.012618296529968454, 0.01892744479495268, 0.012618296529968454, 0.015772870662460567, 0.012618296529968454, 0.006309148264984227, 0.00946372239747634, 0.00946372239747634, 0.012618296529968454, 0.015772870662460567, 0.8958990536277602, 0.8138801261829653, 0.022082018927444796, 0.015772870662460567, 0.012618296529968454, 0.022082018927444796, 0.022082018927444796, 0.022082018927444796, 0.022082018927444796, 0.022082018927444796, 0.022082018927444796, 0.025236593059936908, 0.028391167192429023, 0.028391167192429023, 0.031545741324921134, 0.03470031545741325, 0.04416403785488959, 0.07886435331230283, 0.15457413249211358, 0.4889589905362776], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Med12.gap.json b/pfam_gap_rates/Med12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..663c62e9d8b072cada33fbdb8930b1d6295f2815
--- /dev/null
+++ b/pfam_gap_rates/Med12.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med22.gap.json b/pfam_gap_rates/Med22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c570a434c3fe0b7545fdb7e6dc9ae61653fab500
--- /dev/null
+++ b/pfam_gap_rates/Med22.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med31.gap.json b/pfam_gap_rates/Med31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d9be27592b9c973090e59725c346649eee5acb6
--- /dev/null
+++ b/pfam_gap_rates/Med31.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Memo.gap.json b/pfam_gap_rates/Memo.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d20c6bce179320a1334a26f4183cf2927c09b31
--- /dev/null
+++ b/pfam_gap_rates/Memo.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MerC.gap.json b/pfam_gap_rates/MerC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54e6d81569ac842e4e7d73a09ebbb5ae433207dd
--- /dev/null
+++ b/pfam_gap_rates/MerC.gap.json
@@ -0,0 +1 @@
+{"family": "MerC", "n_seqs": 190, "length": 160, "gap_rates": [0.26842105263157895, 0.21578947368421053, 0.14736842105263157, 0.11052631578947368, 0.08947368421052632, 0.06842105263157895, 0.05789473684210526, 0.05263157894736842, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.8947368421052632, 0.02631578947368421, 0.021052631578947368, 0.021052631578947368, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.02631578947368421, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.021052631578947368, 0.010526315789473684, 0.021052631578947368, 0.015789473684210527, 0.24736842105263157, 0.8, 0.042105263157894736, 0.02631578947368421, 0.8210526315789474, 0.015789473684210527, 0.03684210526315789, 0.010526315789473684, 0.9105263157894737, 0.9210526315789473, 0.9368421052631579, 0.9315789473684211, 0.9105263157894737, 0.9105263157894737, 0.02631578947368421, 0.02631578947368421, 0.015789473684210527, 0.015789473684210527, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.010526315789473684, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005263157894736842, 0.02631578947368421, 0.8578947368421053, 0.005263157894736842, 0.005263157894736842, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005263157894736842, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015789473684210527, 0.0, 0.0, 0.0, 0.7894736842105263, 0.8263157894736842, 0.9157894736842105, 0.9263157894736842, 0.9368421052631579, 0.9368421052631579, 0.9368421052631579, 0.9368421052631579, 0.9421052631578948, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.9368421052631579, 0.9368421052631579, 0.9368421052631579, 0.9368421052631579, 0.9263157894736842, 0.9157894736842105, 0.9052631578947369, 0.8157894736842105, 0.7157894736842105, 0.5, 0.43157894736842106, 0.4, 0.3736842105263158, 0.32105263157894737, 0.3263157894736842, 0.2894736842105263, 0.9210526315789473, 0.9263157894736842, 0.9421052631578948, 0.9421052631578948, 0.9473684210526315, 0.9473684210526315, 0.9421052631578948, 0.9421052631578948, 0.9315789473684211, 0.9210526315789473, 0.9210526315789473, 0.6894736842105263, 0.6263157894736842, 0.5684210526315789, 0.5263157894736842, 0.48947368421052634, 0.45789473684210524, 0.4368421052631579, 0.41578947368421054, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.021052631578947368, 0.021052631578947368, 0.042105263157894736, 0.05263157894736842, 0.08421052631578947, 0.1631578947368421, 0.4105263157894737], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MerR_2.gap.json b/pfam_gap_rates/MerR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4559a843daaed6578074219003439f528a60d3a
--- /dev/null
+++ b/pfam_gap_rates/MerR_2.gap.json
@@ -0,0 +1 @@
+{"family": "MerR_2", "n_seqs": 260, "length": 87, "gap_rates": [0.5615384615384615, 0.2923076923076923, 0.21923076923076923, 0.18846153846153846, 0.17692307692307693, 0.1576923076923077, 0.15, 0.13846153846153847, 0.11538461538461539, 0.1, 0.05384615384615385, 0.038461538461538464, 0.03076923076923077, 0.03076923076923077, 0.023076923076923078, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.9153846153846154, 0.011538461538461539, 0.03076923076923077, 0.03076923076923077, 0.04230769230769231, 0.6346153846153846, 0.09230769230769231, 0.9307692307692308, 0.05384615384615385, 0.05, 0.038461538461538464, 0.007692307692307693, 0.0, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.015384615384615385, 0.019230769230769232, 0.019230769230769232, 0.023076923076923078, 0.026923076923076925, 0.03461538461538462, 0.06538461538461539, 0.09615384615384616, 0.16153846153846155, 0.3038461538461538, 0.35, 0.4653846153846154, 0.6538461538461539], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Metallothio_2.gap.json b/pfam_gap_rates/Metallothio_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ac627bbbac19ce627b9212b5a02dd5a56aa4b9f
--- /dev/null
+++ b/pfam_gap_rates/Metallothio_2.gap.json
@@ -0,0 +1 @@
+{"family": "Metallothio_2", "n_seqs": 109, "length": 87, "gap_rates": [0.3486238532110092, 0.3302752293577982, 0.21100917431192662, 0.7981651376146789, 0.21100917431192662, 0.1834862385321101, 0.13761467889908258, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.11926605504587157, 0.11009174311926606, 0.1651376146788991, 0.11009174311926606, 0.11009174311926606, 0.11009174311926606, 0.11009174311926606, 0.3302752293577982, 0.3211009174311927, 0.3394495412844037, 0.3394495412844037, 0.3669724770642202, 0.3119266055045872, 0.05504587155963303, 0.03669724770642202, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.14678899082568808, 0.43119266055045874, 0.22018348623853212, 0.2018348623853211, 0.944954128440367, 0.7798165137614679, 0.10091743119266056, 0.045871559633027525, 0.045871559633027525, 0.03669724770642202, 0.03669724770642202, 0.05504587155963303, 0.01834862385321101, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.03669724770642202, 0.027522935779816515, 0.03669724770642202, 0.08256880733944955, 0.05504587155963303, 0.09174311926605505, 0.10091743119266056, 0.22935779816513763, 0.944954128440367, 0.944954128440367, 0.8073394495412844, 0.5412844036697247, 0.3211009174311927, 0.12844036697247707, 0.10091743119266056, 0.07339449541284404, 0.11009174311926606, 0.11009174311926606, 0.08256880733944955, 0.23853211009174313, 0.3761467889908257, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltr_RsmF_N.gap.json b/pfam_gap_rates/Methyltr_RsmF_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03c4d9c4557c0fdc22e332ed2e051b36b1a62158
--- /dev/null
+++ b/pfam_gap_rates/Methyltr_RsmF_N.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltr_RsmF_N", "n_seqs": 1118, "length": 97, "gap_rates": [0.6010733452593918, 0.5277280858676208, 0.49552772808586765, 0.4749552772808587, 0.44633273703041143, 0.4007155635062612, 0.3542039355992844, 0.32647584973166366, 0.29874776386404295, 0.2710196779964222, 0.23166368515205724, 0.19230769230769232, 0.16636851520572452, 0.13327370304114491, 0.08407871198568873, 0.9499105545617174, 0.5715563506261181, 0.026833631484794274, 0.02146690518783542, 0.018783542039355994, 0.016100178890876567, 0.014311270125223614, 0.014311270125223614, 0.014311270125223614, 0.013416815742397137, 0.014311270125223614, 0.013416815742397137, 0.014311270125223614, 0.01073345259391771, 0.011627906976744186, 0.009838998211091235, 0.009838998211091235, 0.009838998211091235, 0.009838998211091235, 0.009838998211091235, 0.008944543828264758, 0.008944543828264758, 0.008944543828264758, 0.008944543828264758, 0.008944543828264758, 0.08944543828264759, 0.08228980322003578, 0.06082289803220036, 0.04740608228980322, 0.03667262969588551, 0.028622540250447227, 0.025044722719141325, 0.049194991055456175, 0.05456171735241502, 0.06976744186046512, 0.06529516994633273, 0.4418604651162791, 0.3631484794275492, 0.29964221824686943, 0.08318425760286226, 0.04293381037567084, 0.016100178890876567, 0.007155635062611807, 0.005366726296958855, 0.008050089445438283, 0.7683363148479427, 0.005366726296958855, 0.006261180679785331, 0.008050089445438283, 0.007155635062611807, 0.007155635062611807, 0.009838998211091235, 0.007155635062611807, 0.0035778175313059034, 0.0026833631484794273, 0.0035778175313059034, 0.0035778175313059034, 0.0035778175313059034, 0.11627906976744186, 0.07155635062611806, 0.06350626118067978, 0.9042933810375671, 0.5992844364937389, 0.0035778175313059034, 0.0026833631484794273, 0.0026833631484794273, 0.0026833631484794273, 0.0035778175313059034, 0.0035778175313059034, 0.004472271914132379, 0.0035778175313059034, 0.0035778175313059034, 0.0035778175313059034, 0.004472271914132379, 0.005366726296958855, 0.005366726296958855, 0.006261180679785331, 0.007155635062611807, 0.012522361359570662, 0.023255813953488372, 0.03130590339892665, 0.3962432915921288], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_9.gap.json b/pfam_gap_rates/Methyltransf_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed843655686477447e41773d3cc47873c64bae82
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_9.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_9", "n_seqs": 267, "length": 320, "gap_rates": [0.7752808988764045, 0.7153558052434457, 0.6816479400749064, 0.6404494382022472, 0.6104868913857678, 0.5917602996254682, 0.5730337078651685, 0.5355805243445693, 0.5131086142322098, 0.4943820224719101, 0.48314606741573035, 0.4756554307116105, 0.47191011235955055, 0.45318352059925093, 0.449438202247191, 0.44569288389513106, 0.4344569288389513, 0.4344569288389513, 0.42696629213483145, 0.40823970037453183, 0.40823970037453183, 0.40823970037453183, 0.40823970037453183, 0.3970037453183521, 0.40074906367041196, 0.6142322097378277, 0.3970037453183521, 0.3970037453183521, 0.38202247191011235, 0.37453183520599254, 0.3782771535580524, 0.3707865168539326, 0.36704119850187267, 0.3595505617977528, 0.35580524344569286, 0.352059925093633, 0.34831460674157305, 0.34831460674157305, 0.3408239700374532, 0.3408239700374532, 0.3333333333333333, 0.3295880149812734, 0.3295880149812734, 0.3295880149812734, 0.3295880149812734, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltrn_RNA_3.gap.json b/pfam_gap_rates/Methyltrn_RNA_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..387c5ddc4c54c7deee7a235e2f959759c03c30f4
--- /dev/null
+++ b/pfam_gap_rates/Methyltrn_RNA_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MgtE_N.gap.json b/pfam_gap_rates/MgtE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f09e846dbf59bb66dc5235701b73dd69942ff120
--- /dev/null
+++ b/pfam_gap_rates/MgtE_N.gap.json
@@ -0,0 +1 @@
+{"family": "MgtE_N", "n_seqs": 2073, "length": 102, "gap_rates": [0.49397009165460687, 0.24264351181862034, 0.16353111432706222, 0.1336227689339122, 0.10805595754944525, 0.0964785335262904, 0.09068982151471297, 0.085383502170767, 0.0844187168355041, 0.0824891461649783, 0.08007718282682104, 0.07766521948866377, 0.08007718282682104, 0.07042932947419199, 0.07670043415340087, 0.06319343945972021, 0.059334298118668596, 0.05740472744814279, 0.05065123010130246, 0.05065123010130246, 0.04775687409551375, 0.04775687409551375, 0.046792088760250844, 0.046792088760250844, 0.04582730342498794, 0.049204052098408106, 0.04582730342498794, 0.04052098408104197, 0.038109020742884706, 0.03569705740472745, 0.035214664737095995, 0.03376748673420164, 0.032320308731307285, 0.03087313072841293, 0.03183791606367583, 0.03087313072841293, 0.02942595272551857, 0.02894356005788712, 0.027013989387361312, 0.02653159671972986, 0.04389773275446213, 0.04003859141341052, 0.014954172696575013, 0.00964785335262904, 0.006271104679208876, 0.005306319343945972, 0.003376748673420164, 0.003376748673420164, 0.001929570670525808, 0.001447178002894356, 0.000964785335262904, 0.001447178002894356, 0.001929570670525808, 0.00241196333815726, 0.002894356005788712, 0.002894356005788712, 0.002894356005788712, 0.00482392667631452, 0.006271104679208876, 0.007718282682103232, 0.00723589001447178, 0.011095031355523395, 0.017366136034732273, 0.018330921369995177, 0.018330921369995177, 0.01881331403762663, 0.01929570670525808, 0.020742884708152436, 0.020742884708152436, 0.021225277375783887, 0.02363724071394115, 0.02604920405209841, 0.027013989387361312, 0.03376748673420164, 0.038109020742884706, 0.03907380607814761, 0.039556198745779064, 0.041968162083936326, 0.041968162083936326, 0.042450554751567775, 0.042450554751567775, 0.04486251808972504, 0.0482392667631452, 0.04872165943077665, 0.05016883743367101, 0.059334298118668596, 0.06174626145682586, 0.0602990834539315, 0.06222865412445731, 0.06512301013024602, 0.06849975880366618, 0.06994693680656054, 0.07187650747708635, 0.07718282682103232, 0.0824891461649783, 0.08924264351181863, 0.09165460684997588, 0.10419681620839363, 0.11770381090207428, 0.1225277375783888, 0.15726000964785336, 0.4003859141341052], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mid1.gap.json b/pfam_gap_rates/Mid1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8967367e5d598f6256ecf0bd0feb9b8487adf72d
--- /dev/null
+++ b/pfam_gap_rates/Mid1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MliC.gap.json b/pfam_gap_rates/MliC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93eacc7b41a01bfc41dd54b231ad40eb7360ae6e
--- /dev/null
+++ b/pfam_gap_rates/MliC.gap.json
@@ -0,0 +1 @@
+{"family": "MliC", "n_seqs": 241, "length": 83, "gap_rates": [0.17842323651452283, 0.15767634854771784, 0.12033195020746888, 0.1037344398340249, 0.08713692946058091, 0.0995850622406639, 0.27800829875518673, 0.9045643153526971, 0.8589211618257261, 0.058091286307053944, 0.05394190871369295, 0.04979253112033195, 0.04149377593360996, 0.03734439834024896, 0.04149377593360996, 0.04149377593360996, 0.8506224066390041, 0.9253112033195021, 0.6182572614107884, 0.44398340248962653, 0.2946058091286307, 0.16182572614107885, 0.029045643153526972, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.02074688796680498, 0.02074688796680498, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.8506224066390041, 0.012448132780082987, 0.004149377593360996, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.008298755186721992, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.5311203319502075, 0.8091286307053942, 0.91701244813278, 0.9336099585062241, 0.8921161825726142, 0.6390041493775933, 0.03319502074688797, 0.3236514522821577, 0.9087136929460581, 0.7842323651452282, 0.22406639004149378, 0.03734439834024896, 0.03319502074688797, 0.03319502074688797, 0.03734439834024896, 0.91701244813278, 0.03319502074688797, 0.8713692946058091, 0.02074688796680498, 0.02074688796680498, 0.02074688796680498, 0.02074688796680498, 0.029045643153526972, 0.04149377593360996, 0.04564315352697095, 0.05394190871369295, 0.08298755186721991, 0.0954356846473029, 0.12448132780082988, 0.2033195020746888, 0.27385892116182575, 0.46473029045643155, 0.7053941908713693, 0.946058091286307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mo-co_dimer.gap.json b/pfam_gap_rates/Mo-co_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30fdda707f118abee447f9ff4325c26828589848
--- /dev/null
+++ b/pfam_gap_rates/Mo-co_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "Mo-co_dimer", "n_seqs": 910, "length": 153, "gap_rates": [0.8802197802197802, 0.743956043956044, 0.41208791208791207, 0.2978021978021978, 0.23406593406593407, 0.2087912087912088, 0.1912087912087912, 0.15934065934065933, 0.14945054945054945, 0.14175824175824175, 0.13846153846153847, 0.13626373626373625, 0.13186813186813187, 0.13186813186813187, 0.12967032967032968, 0.13076923076923078, 0.13076923076923078, 0.13186813186813187, 0.13076923076923078, 0.12527472527472527, 0.12747252747252746, 0.12527472527472527, 0.12087912087912088, 0.11758241758241758, 0.15604395604395604, 0.36813186813186816, 0.7021978021978021, 0.843956043956044, 0.8263736263736263, 0.6032967032967033, 0.27582417582417584, 0.09340659340659341, 0.038461538461538464, 0.031868131868131866, 0.03076923076923077, 0.03076923076923077, 0.02857142857142857, 0.026373626373626374, 0.026373626373626374, 0.025274725274725275, 0.031868131868131866, 0.03736263736263736, 0.04835164835164835, 0.08241758241758242, 0.34065934065934067, 0.02967032967032967, 0.026373626373626374, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.026373626373626374, 0.027472527472527472, 0.02857142857142857, 0.02857142857142857, 0.02967032967032967, 0.03296703296703297, 0.03406593406593406, 0.04835164835164835, 0.035164835164835165, 0.031868131868131866, 0.031868131868131866, 0.031868131868131866, 0.03296703296703297, 0.03406593406593406, 0.038461538461538464, 0.03956043956043956, 0.03956043956043956, 0.04395604395604396, 0.07362637362637363, 0.11098901098901098, 0.21978021978021978, 0.5131868131868131, 0.6142857142857143, 0.634065934065934, 0.6934065934065934, 0.6879120879120879, 0.8021978021978022, 0.7901098901098901, 0.8769230769230769, 0.889010989010989, 0.8934065934065935, 0.8967032967032967, 0.9175824175824175, 0.8989010989010989, 0.8945054945054945, 0.8912087912087913, 0.8879120879120879, 0.8747252747252747, 0.7681318681318682, 0.7186813186813187, 0.6582417582417582, 0.5340659340659341, 0.2989010989010989, 0.09010989010989011, 0.06593406593406594, 0.06043956043956044, 0.06263736263736264, 0.06153846153846154, 0.06263736263736264, 0.06263736263736264, 0.06593406593406594, 0.07252747252747253, 0.08021978021978023, 0.07692307692307693, 0.08021978021978023, 0.07912087912087912, 0.07692307692307693, 0.9428571428571428, 0.9285714285714286, 0.2813186813186813, 0.532967032967033, 0.24725274725274726, 0.07912087912087912, 0.06263736263736264, 0.06263736263736264, 0.06263736263736264, 0.06373626373626373, 0.06373626373626373, 0.06373626373626373, 0.06373626373626373, 0.06373626373626373, 0.06703296703296703, 0.06813186813186813, 0.06813186813186813, 0.07032967032967033, 0.07032967032967033, 0.06923076923076923, 0.07142857142857142, 0.07692307692307693, 0.07912087912087912, 0.7241758241758242, 0.5373626373626373, 0.08571428571428572, 0.0967032967032967, 0.1054945054945055, 0.10659340659340659, 0.11098901098901098, 0.11868131868131868, 0.12307692307692308, 0.12747252747252746, 0.13626373626373625, 0.15164835164835164, 0.2835164835164835, 0.17802197802197803, 0.19230769230769232, 0.21318681318681318, 0.2571428571428571, 0.2714285714285714, 0.2857142857142857, 0.2989010989010989, 0.34395604395604396, 0.46483516483516485, 0.778021978021978], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MoaE.gap.json b/pfam_gap_rates/MoaE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbe1e900ac6731e4df4248a2a7b9afe0bd4c1ca8
--- /dev/null
+++ b/pfam_gap_rates/MoaE.gap.json
@@ -0,0 +1 @@
+{"family": "MoaE", "n_seqs": 1346, "length": 119, "gap_rates": [0.6181277860326895, 0.39821693907875183, 0.29940564635958394, 0.2526002971768202, 0.21768202080237742, 0.20208023774145617, 0.1961367013372957, 0.18350668647845467, 0.16790490341753342, 0.150074294205052, 0.788261515601783, 0.1263001485884101, 0.11441307578008915, 0.10475482912332838, 0.09955423476968796, 0.12481426448736999, 0.07429420505200594, 0.8684992570579495, 0.7303120356612184, 0.04977711738484398, 0.03714710252600297, 0.03268945022288262, 0.029717682020802376, 0.029717682020802376, 0.029717682020802376, 0.02897473997028232, 0.02823179791976226, 0.02674591381872214, 0.02674591381872214, 0.02451708766716196, 0.023031203566121844, 0.022288261515601784, 0.021545319465081723, 0.020802377414561663, 0.07355126300148589, 0.04606240713224369, 0.11069836552748885, 0.06092124814264487, 0.9101040118870728, 0.836552748885587, 0.04309063893016345, 0.07652303120356613, 0.03714710252600297, 0.015601783060921248, 0.01337295690936107, 0.01411589895988113, 0.01411589895988113, 0.01411589895988113, 0.014858841010401188, 0.01634472511144131, 0.019316493313521546, 0.020802377414561663, 0.19539375928677563, 0.0549777117384844, 0.04903417533432392, 0.04606240713224369, 0.01337295690936107, 0.01411589895988113, 0.01411589895988113, 0.01337295690936107, 0.01188707280832095, 0.01263001485884101, 0.01263001485884101, 0.01263001485884101, 0.01411589895988113, 0.01263001485884101, 0.01263001485884101, 0.01263001485884101, 0.01337295690936107, 0.015601783060921248, 0.02897473997028232, 0.8759286775631501, 0.030460624071322436, 0.029717682020802376, 0.02600297176820208, 0.015601783060921248, 0.011144130757800892, 0.011144130757800892, 0.01188707280832095, 0.011144130757800892, 0.010401188707280832, 0.011144130757800892, 0.01263001485884101, 0.014858841010401188, 0.014858841010401188, 0.014858841010401188, 0.014858841010401188, 0.014858841010401188, 0.01411589895988113, 0.01411589895988113, 0.01411589895988113, 0.014858841010401188, 0.014858841010401188, 0.01411589895988113, 0.01411589895988113, 0.01337295690936107, 0.01411589895988113, 0.01411589895988113, 0.01411589895988113, 0.014858841010401188, 0.014858841010401188, 0.014858841010401188, 0.014858841010401188, 0.015601783060921248, 0.015601783060921248, 0.01634472511144131, 0.01634472511144131, 0.01634472511144131, 0.017830609212481426, 0.017830609212481426, 0.017830609212481426, 0.017830609212481426, 0.018573551263001486, 0.018573551263001486, 0.018573551263001486, 0.021545319465081723, 0.022288261515601784, 0.048291233283803865, 0.5505200594353641], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MrpF_PhaF.gap.json b/pfam_gap_rates/MrpF_PhaF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61dbfe3e628514a128f44eb2674e6599c365d8ab
--- /dev/null
+++ b/pfam_gap_rates/MrpF_PhaF.gap.json
@@ -0,0 +1 @@
+{"family": "MrpF_PhaF", "n_seqs": 874, "length": 53, "gap_rates": [0.4897025171624714, 0.06636155606407322, 0.013729977116704805, 0.008009153318077803, 0.008009153318077803, 0.008009153318077803, 0.005720823798627002, 0.004576659038901602, 0.004576659038901602, 0.003432494279176201, 0.003432494279176201, 0.003432494279176201, 0.003432494279176201, 0.003432494279176201, 0.002288329519450801, 0.002288329519450801, 0.002288329519450801, 0.002288329519450801, 0.002288329519450801, 0.002288329519450801, 0.002288329519450801, 0.002288329519450801, 0.0011441647597254005, 0.0, 0.0, 0.0, 0.0, 0.0011441647597254005, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011441647597254005, 0.0011441647597254005, 0.003432494279176201, 0.003432494279176201, 0.003432494279176201, 0.005720823798627002, 0.019450800915331808, 0.06864988558352403, 0.19107551487414187, 0.6647597254004577], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mt_ATP-synt_B.gap.json b/pfam_gap_rates/Mt_ATP-synt_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4fc80aaa19ff7012e5f6494e3aaa7623a297cc4
--- /dev/null
+++ b/pfam_gap_rates/Mt_ATP-synt_B.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mtc.gap.json b/pfam_gap_rates/Mtc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2575f291bde61de58458d8efaa80ce64420f350e
--- /dev/null
+++ b/pfam_gap_rates/Mtc.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Multi_Drug_Res.gap.json b/pfam_gap_rates/Multi_Drug_Res.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65848c3f985367dc92fa11fade019f6c374b4200
--- /dev/null
+++ b/pfam_gap_rates/Multi_Drug_Res.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mut7-C.gap.json b/pfam_gap_rates/Mut7-C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4adfc6ad852a59cb53474217da162e7855272fc4
--- /dev/null
+++ b/pfam_gap_rates/Mut7-C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MutL.gap.json b/pfam_gap_rates/MutL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b3785b1563ef9cdb791e3f116e289592c8ae718
--- /dev/null
+++ b/pfam_gap_rates/MutL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MutS_V.gap.json b/pfam_gap_rates/MutS_V.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42d52b8cae4f23fdc101d9070d2c69ff98acdb69
--- /dev/null
+++ b/pfam_gap_rates/MutS_V.gap.json
@@ -0,0 +1 @@
+{"family": "MutS_V", "n_seqs": 5000, "length": 199, "gap_rates": [0.5078, 0.065, 0.0552, 0.054, 0.0528, 0.0514, 0.0512, 0.0488, 0.0462, 0.0452, 0.0446, 0.0438, 0.044, 0.0432, 0.0428, 0.0428, 0.0418, 0.0404, 0.0398, 0.0398, 0.0398, 0.0392, 0.0392, 0.0362, 0.0358, 0.0354, 0.0354, 0.0372, 0.037, 0.0366, 0.0366, 0.036, 0.0356, 0.0368, 0.0366, 0.9048, 0.0362, 0.0374, 0.0388, 0.037, 0.0386, 0.0396, 0.062, 0.051, 0.038, 0.0408, 0.038, 0.0398, 0.0392, 0.0468, 0.0446, 0.0418, 0.0456, 0.0404, 0.0422, 0.0424, 0.0412, 0.0396, 0.0424, 0.043, 0.0396, 0.04, 0.038, 0.038, 0.0388, 0.0376, 0.038, 0.0374, 0.0376, 0.038, 0.038, 0.0392, 0.038, 0.0374, 0.0394, 0.0428, 0.0422, 0.041, 0.0412, 0.0398, 0.0404, 0.0402, 0.0402, 0.0394, 0.0392, 0.0388, 0.039, 0.0396, 0.04, 0.0402, 0.0414, 0.0416, 0.0418, 0.0422, 0.0422, 0.042, 0.0426, 0.0436, 0.044, 0.0444, 0.0446, 0.0444, 0.0448, 0.0452, 0.0448, 0.046, 0.0456, 0.0456, 0.0478, 0.2854, 0.1972, 0.0538, 0.0526, 0.049, 0.0498, 0.0496, 0.0496, 0.0496, 0.0494, 0.0492, 0.0496, 0.0508, 0.0532, 0.0542, 0.0546, 0.056, 0.0592, 0.0618, 0.0732, 0.086, 0.0922, 0.0834, 0.0736, 0.9422, 0.0746, 0.0768, 0.0778, 0.0778, 0.0794, 0.079, 0.0806, 0.0822, 0.116, 0.7968, 0.8464, 0.8874, 0.928, 0.945, 0.9116, 0.859, 0.8396, 0.78, 0.2036, 0.221, 0.1432, 0.1008, 0.094, 0.096, 0.0988, 0.0966, 0.093, 0.092, 0.0884, 0.0878, 0.0892, 0.0892, 0.0888, 0.0892, 0.0912, 0.0928, 0.0994, 0.1128, 0.1146, 0.116, 0.1196, 0.1214, 0.1226, 0.1244, 0.1258, 0.1304, 0.1326, 0.1346, 0.1364, 0.1468, 0.1482, 0.151, 0.1518, 0.1538, 0.1546, 0.1564, 0.1576, 0.1592, 0.1654, 0.1878, 0.2678, 0.3814, 0.4754, 0.5272, 0.691], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MyTH4.gap.json b/pfam_gap_rates/MyTH4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..034e9e05b471f12ddbfa8490821175d3fc239e05
--- /dev/null
+++ b/pfam_gap_rates/MyTH4.gap.json
@@ -0,0 +1 @@
+{"family": "MyTH4", "n_seqs": 922, "length": 130, "gap_rates": [0.6681127982646421, 0.4175704989154013, 0.19956616052060738, 0.17462039045553146, 0.1399132321041215, 0.10086767895878525, 0.09544468546637744, 0.08676789587852494, 0.08459869848156182, 0.08026030368763558, 0.08026030368763558, 0.07158351409978309, 0.06724511930585683, 0.06182212581344902, 0.06073752711496746, 0.05856832971800434, 0.057483731019522775, 0.057483731019522775, 0.057483731019522775, 0.05639913232104121, 0.05639913232104121, 0.05639913232104121, 0.05639913232104121, 0.05639913232104121, 0.05639913232104121, 0.055314533622559656, 0.055314533622559656, 0.05314533622559653, 0.04338394793926247, 0.03470715835140998, 0.04338394793926247, 0.07049891540130152, 0.789587852494577, 0.7689804772234273, 0.06290672451193059, 0.0509761388286334, 0.0455531453362256, 0.04338394793926247, 0.04229934924078091, 0.04013015184381779, 0.0368763557483731, 0.031453362255965296, 0.03253796095444685, 0.033622559652928416, 0.03579175704989154, 0.03470715835140998, 0.03470715835140998, 0.033622559652928416, 0.033622559652928416, 0.03253796095444685, 0.033622559652928416, 0.033622559652928416, 0.03579175704989154, 0.049891540130151846, 0.04880694143167028, 0.046637744034707156, 0.913232104121475, 0.052060737527114966, 0.04880694143167028, 0.046637744034707156, 0.0455531453362256, 0.04772234273318872, 0.046637744034707156, 0.046637744034707156, 0.04880694143167028, 0.04880694143167028, 0.049891540130151846, 0.0509761388286334, 0.05422993492407809, 0.0596529284164859, 0.06182212581344902, 0.06832971800433839, 0.3329718004338395, 0.3969631236442516, 0.6236442516268981, 0.7711496746203904, 0.8817787418655098, 0.9240780911062907, 0.9360086767895879, 0.9370932754880694, 0.9392624728850325, 0.9490238611713666, 0.9468546637744034, 0.938177874186551, 0.9370932754880694, 0.9316702819956616, 0.8915401301518439, 0.8232104121475055, 0.6984815618221258, 0.5878524945770065, 0.4067245119305857, 0.39913232104121477, 0.1019522776572668, 0.8004338394793926, 0.745119305856833, 0.08351409978308026, 0.0824295010845987, 0.08026030368763558, 0.0824295010845987, 0.0824295010845987, 0.08351409978308026, 0.09002169197396963, 0.0911062906724512, 0.09544468546637744, 0.09652928416485901, 0.12472885032537961, 0.10737527114967461, 0.11496746203904555, 0.1735357917570499, 0.17462039045553146, 0.928416485900217, 0.9425162689804772, 0.9186550976138829, 0.1789587852494577, 0.13232104121475055, 0.1301518438177874, 0.13232104121475055, 0.13665943600867678, 0.9392624728850325, 0.14099783080260303, 0.1399132321041215, 0.1399132321041215, 0.1442516268980477, 0.1442516268980477, 0.14967462039045554, 0.15509761388286333, 0.1594360086767896, 0.16919739696312364, 0.2841648590021692, 0.7928416485900217], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Myb_CC_LHEQLE.gap.json b/pfam_gap_rates/Myb_CC_LHEQLE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf01d7959164f2aa8c1b18656a961b8d0d12b8d5
--- /dev/null
+++ b/pfam_gap_rates/Myb_CC_LHEQLE.gap.json
@@ -0,0 +1 @@
+{"family": "Myb_CC_LHEQLE", "n_seqs": 520, "length": 48, "gap_rates": [0.5942307692307692, 0.19423076923076923, 0.12692307692307692, 0.11538461538461539, 0.09615384615384616, 0.09230769230769231, 0.08461538461538462, 0.07692307692307693, 0.05576923076923077, 0.057692307692307696, 0.051923076923076926, 0.05, 0.04807692307692308, 0.04807692307692308, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.038461538461538464, 0.038461538461538464, 0.032692307692307694, 0.028846153846153848, 0.023076923076923078, 0.009615384615384616, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.03076923076923077, 0.032692307692307694, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.032692307692307694, 0.032692307692307694, 0.03653846153846154, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.06923076923076923, 0.04038461538461539, 0.04230769230769231, 0.04807692307692308, 0.05, 0.05576923076923077, 0.06153846153846154, 0.09038461538461538, 0.14423076923076922, 0.6173076923076923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Myb_Cef.gap.json b/pfam_gap_rates/Myb_Cef.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e53be64831fabc4c8a08056b3f3fbc6addf14e65
--- /dev/null
+++ b/pfam_gap_rates/Myb_Cef.gap.json
@@ -0,0 +1 @@
+{"family": "Myb_Cef", "n_seqs": 311, "length": 298, "gap_rates": [0.3086816720257235, 0.3054662379421222, 0.3054662379421222, 0.2958199356913183, 0.7491961414790996, 0.2604501607717042, 0.2347266881028939, 0.21221864951768488, 0.2090032154340836, 0.2861736334405145, 0.24437299035369775, 0.24758842443729903, 0.8263665594855305, 0.9163987138263665, 0.8617363344051447, 0.6077170418006431, 0.3054662379421222, 0.8810289389067524, 0.5819935691318328, 0.33762057877813506, 0.24437299035369775, 0.2057877813504823, 0.1832797427652733, 0.1832797427652733, 0.18006430868167203, 0.17363344051446947, 0.19292604501607716, 0.24758842443729903, 0.2347266881028939, 0.5916398713826366, 0.2990353697749196, 0.7041800643086816, 0.8971061093247589, 0.9421221864951769, 0.9163987138263665, 0.729903536977492, 0.6077170418006431, 0.17363344051446947, 0.17684887459807075, 0.17041800643086816, 0.13183279742765272, 0.7041800643086816, 0.7684887459807074, 0.8102893890675241, 0.8456591639871383, 0.8778135048231511, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Myb_DNA-bind_4.gap.json b/pfam_gap_rates/Myb_DNA-bind_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ede940b9fb6ce2e8b57b83bbee893d6785f898c
--- /dev/null
+++ b/pfam_gap_rates/Myb_DNA-bind_4.gap.json
@@ -0,0 +1 @@
+{"family": "Myb_DNA-bind_4", "n_seqs": 2209, "length": 110, "gap_rates": [0.8782254413761883, 0.5803531009506564, 0.19420552286102308, 0.1480307831598008, 0.14305115436849253, 0.13535536441828883, 0.12856496152105024, 0.12403802625622454, 0.12358533272974197, 0.12222725215029426, 0.11815301041195111, 0.11407876867360797, 0.11181530104119511, 0.11090991398822997, 0.10955183340878226, 0.1072883657763694, 0.10502489814395655, 0.10457220461747398, 0.9040289723856949, 0.4359438660027162, 0.4368492530556813, 0.1308284291534631, 0.11588954277953825, 0.11770031688546853, 0.16659121774558625, 0.16025350837483024, 0.41104572204617473, 0.555454956994115, 0.8886373924852875, 0.9044816659121775, 0.9212313263920326, 0.939791760977818, 0.9289271163422363, 0.9108193752829334, 0.8972385694884563, 0.8709823449524672, 0.6373924852874604, 0.1706654594839294, 0.09053870529651425, 0.08148483476686283, 0.07876867360796741, 0.07741059302851969, 0.09144409234947941, 0.4182888184698959, 0.08103214124038026, 0.07016749660479855, 0.06428248076052512, 0.06111362607514713, 0.058397464916251696, 0.05658669081032141, 0.05477591670439113, 0.05024898143956542, 0.011317338162064282, 0.009959257582616569, 0.009959257582616569, 0.009959257582616569, 0.9099139882299683, 0.930285196921684, 0.9234947940244455, 0.8786781349026709, 0.009053870529651425, 0.009053870529651425, 0.016296966953372568, 0.011317338162064282, 0.0036215482118605704, 0.002716161158895428, 0.0036215482118605704, 0.0018107741059302852, 0.0018107741059302852, 0.002716161158895428, 0.002716161158895428, 0.0036215482118605704, 0.004526935264825713, 0.005885015844273427, 0.007695789950203712, 0.01041195110909914, 0.013580805794477138, 0.015391579900407425, 0.018560434585785424, 0.023540063377093707, 0.02444545043005885, 0.033952014486192846, 0.03666817564508828, 0.039837030330466275, 0.04391127206880942, 0.0552286102308737, 0.17428700769578995, 0.1638750565866908, 0.09687641466727026, 0.09551833408782254, 0.09868718877320054, 0.6097781801720236, 0.9307378904481666, 0.6817564508827524, 0.5866908103214125, 0.10909913988229969, 0.7899502037120869, 0.8116794929832504, 0.7424173834314169, 0.12358533272974197, 0.12856496152105024, 0.13354459031235855, 0.13807152557718425, 0.14712539610683567, 0.15346310547759168, 0.1625169760072431, 0.17157084653689453, 0.1987324581258488, 0.28564961521050247, 0.5129017655047533], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NADH-G_4Fe-4S_3.gap.json b/pfam_gap_rates/NADH-G_4Fe-4S_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f8483e5c281bfb1c2958b5cefbcad34672eff87
--- /dev/null
+++ b/pfam_gap_rates/NADH-G_4Fe-4S_3.gap.json
@@ -0,0 +1 @@
+{"family": "NADH-G_4Fe-4S_3", "n_seqs": 2152, "length": 40, "gap_rates": [0.13894052044609664, 0.06552044609665428, 0.024163568773234202, 0.013011152416356878, 0.0060408921933085506, 0.005111524163568773, 0.004646840148698885, 0.004182156133828996, 0.004182156133828996, 0.004182156133828996, 0.0037174721189591076, 0.0032527881040892194, 0.0032527881040892194, 0.0032527881040892194, 0.0032527881040892194, 0.0018587360594795538, 0.0018587360594795538, 0.0013940520446096654, 0.0, 0.0, 0.0, 0.0027881040892193307, 0.0, 0.0, 0.0, 0.0013940520446096654, 0.004182156133828996, 0.005111524163568773, 0.0055762081784386614, 0.0060408921933085506, 0.006505576208178439, 0.007434944237918215, 0.010687732342007435, 0.01486988847583643, 0.01812267657992565, 0.05018587360594796, 0.09758364312267657, 0.1854089219330855, 0.3870817843866171, 0.5855018587360595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_10.gap.json b/pfam_gap_rates/NAD_binding_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0559ea8ff12e69e3fd815662bd5e5fbafc069f71
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_10.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_binding_10", "n_seqs": 5000, "length": 239, "gap_rates": [0.1626, 0.127, 0.1074, 0.0812, 0.0756, 0.0718, 0.0672, 0.0666, 0.0662, 0.0648, 0.0622, 0.0616, 0.0652, 0.0602, 0.0606, 0.0596, 0.0594, 0.1998, 0.8504, 0.6264, 0.0602, 0.0556, 0.0572, 0.0644, 0.0624, 0.0598, 0.0688, 0.069, 0.0702, 0.945, 0.0712, 0.0746, 0.0738, 0.0782, 0.0804, 0.9352, 0.3048, 0.2744, 0.3188, 0.9318, 0.9456, 0.9082, 0.5602, 0.2532, 0.1134, 0.0878, 0.079, 0.0738, 0.0666, 0.0594, 0.0528, 0.0456, 0.0578, 0.058, 0.0594, 0.0964, 0.9456, 0.0898, 0.0536, 0.0492, 0.0536, 0.05, 0.0472, 0.0478, 0.0406, 0.04, 0.0422, 0.043, 0.0378, 0.0386, 0.0378, 0.0378, 0.0386, 0.039, 0.0392, 0.8348, 0.8934, 0.9394, 0.9164, 0.8484, 0.8206, 0.0428, 0.1102, 0.1216, 0.1276, 0.1098, 0.475, 0.5822, 0.7202, 0.809, 0.8638, 0.7742, 0.6524, 0.5256, 0.4208, 0.1436, 0.2374, 0.2054, 0.075, 0.6674, 0.704, 0.774, 0.85, 0.93, 0.9494, 0.9394, 0.8946, 0.8038, 0.7466, 0.6906, 0.6564, 0.0618, 0.0572, 0.0558, 0.0544, 0.054, 0.0544, 0.057, 0.0586, 0.0676, 0.0764, 0.0812, 0.0774, 0.0764, 0.1004, 0.0694, 0.0676, 0.0676, 0.0702, 0.0768, 0.0736, 0.0768, 0.0804, 0.0868, 0.096, 0.1014, 0.2128, 0.5104, 0.543, 0.491, 0.4504, 0.4344, 0.412, 0.454, 0.4452, 0.4934, 0.5434, 0.5098, 0.4368, 0.933, 0.9468, 0.9392, 0.9268, 0.4002, 0.3716, 0.3048, 0.244, 0.2274, 0.2168, 0.21, 0.1964, 0.1892, 0.1872, 0.1872, 0.188, 0.1888, 0.1894, 0.1914, 0.1928, 0.195, 0.1974, 0.909, 0.9376, 0.8486, 0.2012, 0.2032, 0.2058, 0.2058, 0.2066, 0.2072, 0.2082, 0.2088, 0.2098, 0.212, 0.2156, 0.2242, 0.237, 0.2714, 0.2956, 0.3218, 0.9208, 0.3434, 0.937, 0.7478, 0.3664, 0.3782, 0.3832, 0.4002, 0.4068, 0.4024, 0.4038, 0.8928, 0.9284, 0.9468, 0.9388, 0.914, 0.8714, 0.427, 0.4438, 0.4368, 0.4368, 0.4494, 0.4668, 0.4498, 0.9472, 0.9492, 0.9466, 0.4432, 0.9458, 0.9398, 0.437, 0.4244, 0.4236, 0.4236, 0.4236, 0.4242, 0.4248, 0.4252, 0.426, 0.427, 0.4276, 0.4302, 0.4352, 0.4432, 0.457, 0.4792, 0.548, 0.678, 0.8556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NCBP3.gap.json b/pfam_gap_rates/NCBP3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7906144544a796cd88069311f883762ff0fa11e8
--- /dev/null
+++ b/pfam_gap_rates/NCBP3.gap.json
@@ -0,0 +1 @@
+{"family": "NCBP3", "n_seqs": 221, "length": 72, "gap_rates": [0.6832579185520362, 0.21266968325791855, 0.13122171945701358, 0.11764705882352941, 0.11312217194570136, 0.10407239819004525, 0.10407239819004525, 0.10407239819004525, 0.09954751131221719, 0.09502262443438914, 0.8597285067873304, 0.8506787330316742, 0.09049773755656108, 0.027149321266968326, 0.004524886877828055, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004524886877828055, 0.40271493212669685, 0.4072398190045249, 0.5520361990950227, 0.6153846153846154, 0.9276018099547512, 0.9366515837104072, 0.9457013574660633, 0.9457013574660633, 0.9457013574660633, 0.9457013574660633, 0.9457013574660633, 0.9457013574660633, 0.9411764705882353, 0.9366515837104072, 0.9049773755656109, 0.004524886877828055, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.013574660633484163, 0.013574660633484163, 0.01809954751131222, 0.02262443438914027, 0.03167420814479638, 0.05429864253393665, 0.22171945701357465, 0.4298642533936652, 0.9321266968325792], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NCD3G.gap.json b/pfam_gap_rates/NCD3G.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d3d350694512890c0faf0d18e59fbfd9d41a130
--- /dev/null
+++ b/pfam_gap_rates/NCD3G.gap.json
@@ -0,0 +1 @@
+{"family": "NCD3G", "n_seqs": 1307, "length": 57, "gap_rates": [0.1530221882172915, 0.047436878347360364, 0.023718439173680182, 0.017597551644988524, 0.015302218821729151, 0.013006885998469778, 0.01224177505738332, 0.009181331293037491, 0.009181331293037491, 0.008416220351951033, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.005355776587605203, 0.0045906656465187455, 0.00612088752869166, 0.010711553175210406, 0.01224177505738332, 0.0038255547054322878, 0.00306044376434583, 0.03442999234889059, 0.042081101759755164, 0.24254016832440703, 0.001530221882172915, 0.001530221882172915, 0.0, 0.0007651109410864575, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001530221882172915, 0.0045906656465187455, 0.005355776587605203, 0.005355776587605203, 0.00612088752869166, 0.44605967865340473, 0.40091813312930374, 0.036725325172149964, 0.8370313695485846, 0.946442234123948, 0.7834736036725325, 0.042081101759755164, 0.03749043611323642, 0.045141545524101, 0.046671767406273906, 0.047436878347360364, 0.0504973221117062, 0.05432287681713849, 0.0558530986993114, 0.060443764345830146, 0.06503442999234889, 0.06732976281560826, 0.07651109410864575, 0.1009946442234124, 0.25554705432287683], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NKAIN.gap.json b/pfam_gap_rates/NKAIN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6bad257a2c8e1a52a525e85dd1e339c9fdd1968
--- /dev/null
+++ b/pfam_gap_rates/NKAIN.gap.json
@@ -0,0 +1 @@
+{"family": "NKAIN", "n_seqs": 126, "length": 209, "gap_rates": [0.6825396825396826, 0.6666666666666666, 0.6190476190476191, 0.5952380952380952, 0.5793650793650794, 0.5476190476190477, 0.5238095238095238, 0.5, 0.49206349206349204, 0.4603174603174603, 0.4603174603174603, 0.4444444444444444, 0.4126984126984127, 0.4126984126984127, 0.38095238095238093, 0.373015873015873, 0.35714285714285715, 0.30952380952380953, 0.2619047619047619, 0.23015873015873015, 0.23015873015873015, 0.23015873015873015, 0.23015873015873015, 0.23015873015873015, 0.23015873015873015, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.20634920634920634, 0.20634920634920634, 0.20634920634920634, 0.19047619047619047, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.19047619047619047, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.20634920634920634, 0.15079365079365079, 0.15079365079365079, 0.18253968253968253, 0.1746031746031746, 0.18253968253968253, 0.1984126984126984, 0.9365079365079365, 0.7222222222222222, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1746031746031746, 0.1746031746031746, 0.1746031746031746, 0.4523809523809524, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.1746031746031746, 0.1746031746031746, 0.21428571428571427, 0.6507936507936508, 0.23015873015873015, 0.2698412698412698, 0.25396825396825395, 0.25396825396825395, 0.2619047619047619, 0.2619047619047619, 0.2777777777777778, 0.2857142857142857, 0.24603174603174602, 0.23809523809523808, 0.23015873015873015, 0.21428571428571427, 0.19047619047619047, 0.1746031746031746, 0.15873015873015872, 0.15873015873015872, 0.15079365079365079, 0.15873015873015872, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1746031746031746, 0.1746031746031746, 0.1746031746031746, 0.16666666666666666, 0.1746031746031746, 0.1746031746031746, 0.1746031746031746, 0.1746031746031746, 0.1746031746031746, 0.1746031746031746, 0.1746031746031746, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.18253968253968253, 0.20634920634920634, 0.23809523809523808, 0.24603174603174602, 0.2619047619047619, 0.2857142857142857, 0.2698412698412698, 0.2777777777777778, 0.2777777777777778, 0.2857142857142857, 0.30952380952380953, 0.3333333333333333, 0.35714285714285715, 0.38095238095238093, 0.3888888888888889, 0.3968253968253968, 0.3968253968253968, 0.40476190476190477, 0.4126984126984127, 0.42063492063492064, 0.42857142857142855, 0.49206349206349204, 0.5, 0.5238095238095238, 0.5396825396825397, 0.5396825396825397, 0.5396825396825397, 0.6031746031746031, 0.5634920634920635, 0.5634920634920635, 0.7222222222222222, 0.7222222222222222, 0.746031746031746, 0.9285714285714286, 0.7222222222222222, 0.7222222222222222, 0.7222222222222222, 0.5634920634920635, 0.5634920634920635, 0.5634920634920635, 0.5714285714285714, 0.5714285714285714, 0.5793650793650794, 0.6031746031746031, 0.6031746031746031, 0.6031746031746031, 0.6111111111111112, 0.6587301587301587, 0.6904761904761905, 0.746031746031746, 0.8174603174603174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NMT1_3.gap.json b/pfam_gap_rates/NMT1_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35de1c368c2315b86ff34e6f66c87e09f7573dfc
--- /dev/null
+++ b/pfam_gap_rates/NMT1_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NOD.gap.json b/pfam_gap_rates/NOD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..556adb9b88fa99e9c3bfe8e9ffb9d98687d547d8
--- /dev/null
+++ b/pfam_gap_rates/NOD.gap.json
@@ -0,0 +1 @@
+{"family": "NOD", "n_seqs": 132, "length": 57, "gap_rates": [0.4621212121212121, 0.36363636363636365, 0.2803030303030303, 0.21212121212121213, 0.18181818181818182, 0.11363636363636363, 0.11363636363636363, 0.05303030303030303, 0.045454545454545456, 0.03787878787878788, 0.03787878787878788, 0.03787878787878788, 0.03787878787878788, 0.03787878787878788, 0.030303030303030304, 0.030303030303030304, 0.022727272727272728, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.0, 0.0, 0.0, 0.0, 0.946969696969697, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007575757575757576, 0.015151515151515152, 0.08333333333333333, 0.022727272727272728, 0.12878787878787878, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.030303030303030304, 0.06060606060606061, 0.07575757575757576, 0.5833333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NOPS.gap.json b/pfam_gap_rates/NOPS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bab6ea6d08d28b395d87077a3b3551125771819
--- /dev/null
+++ b/pfam_gap_rates/NOPS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NRDD.gap.json b/pfam_gap_rates/NRDD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5cc57781a5dc65e1d52d97bf9dbbd9b92267ce3
--- /dev/null
+++ b/pfam_gap_rates/NRDD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NT-C2.gap.json b/pfam_gap_rates/NT-C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6b3569af1a024c76e4101c4b9882506a41e471a
--- /dev/null
+++ b/pfam_gap_rates/NT-C2.gap.json
@@ -0,0 +1 @@
+{"family": "NT-C2", "n_seqs": 699, "length": 195, "gap_rates": [0.7753934191702432, 0.46924177396280403, 0.38626609442060084, 0.3419170243204578, 0.3147353361945637, 0.24606580829756797, 0.23462088698140202, 0.21745350500715308, 0.21030042918454936, 0.20743919885550788, 0.19742489270386265, 0.1888412017167382, 0.1859799713876967, 0.18454935622317598, 0.18025751072961374, 0.1759656652360515, 0.1759656652360515, 0.17167381974248927, 0.1630901287553648, 0.16022889842632332, 0.15736766809728184, 0.6409155937052933, 0.871244635193133, 0.9470672389127325, 0.8884120171673819, 0.7682403433476395, 0.6080114449213162, 0.1530758226037196, 0.13590844062947066, 0.13161659513590845, 0.12589413447782546, 0.12160228898426323, 0.12017167381974249, 0.12017167381974249, 0.12017167381974249, 0.11874105865522175, 0.12017167381974249, 0.11731044349070101, 0.10872675250357654, 0.10586552217453506, 0.1044349070100143, 0.11587982832618025, 0.2632331902718169, 0.28898426323319026, 0.6237482117310443, 0.7668097281831188, 0.8612303290414879, 0.8898426323319027, 0.9256080114449213, 0.9399141630901288, 0.9484978540772532, 0.9470672389127325, 0.9370529327610873, 0.9084406294706724, 0.8698140200286123, 0.8555078683834049, 0.7296137339055794, 0.5965665236051502, 0.15450643776824036, 0.07582260371959942, 0.06866952789699571, 0.060085836909871244, 0.060085836909871244, 0.05436337625178827, 0.05007153075822604, 0.04148783977110158, 0.03719599427753934, 0.0357653791130186, 0.0357653791130186, 0.034334763948497854, 0.02861230329041488, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.024320457796852647, 0.8655221745350501, 0.8254649499284692, 0.024320457796852647, 0.024320457796852647, 0.024320457796852647, 0.022889842632331903, 0.020028612303290415, 0.020028612303290415, 0.01859799713876967, 0.017167381974248927, 0.015736766809728183, 0.01430615164520744, 0.015736766809728183, 0.08011444921316166, 0.8397711015736766, 0.9055793991416309, 0.876967095851216, 0.8082975679542204, 0.020028612303290415, 0.0357653791130186, 0.0357653791130186, 0.05293276108726753, 0.9413447782546495, 0.9484978540772532, 0.9341917024320457, 0.13733905579399142, 0.01859799713876967, 0.012875536480686695, 0.011444921316165951, 0.008583690987124463, 0.008583690987124463, 0.00715307582260372, 0.00715307582260372, 0.00715307582260372, 0.008583690987124463, 0.008583690987124463, 0.008583690987124463, 0.008583690987124463, 0.010014306151645207, 0.23891273247496422, 0.8841201716738197, 0.9155937052932761, 0.9399141630901288, 0.932761087267525, 0.9027181688125894, 0.8569384835479256, 0.6852646638054364, 0.1402002861230329, 0.034334763948497854, 0.034334763948497854, 0.04005722460658083, 0.08583690987124463, 0.8655221745350501, 0.9484978540772532, 0.6051502145922747, 0.3319027181688126, 0.027181688125894134, 0.01430615164520744, 0.01430615164520744, 0.01430615164520744, 0.01430615164520744, 0.01430615164520744, 0.01430615164520744, 0.01430615164520744, 0.015736766809728183, 0.015736766809728183, 0.015736766809728183, 0.02145922746781116, 0.024320457796852647, 0.024320457796852647, 0.22603719599427755, 0.2646638054363376, 0.7868383404864091, 0.8326180257510729, 0.8469241773962805, 0.9399141630901288, 0.8597997138769671, 0.8454935622317596, 0.8168812589413448, 0.7296137339055794, 0.26180257510729615, 0.0844062947067239, 0.07439198855507868, 0.08011444921316166, 0.08726752503576538, 0.08869814020028613, 0.09298998569384835, 0.09728183118741059, 0.10014306151645208, 0.10157367668097282, 0.1072961373390558, 0.10872675250357654, 0.10872675250357654, 0.7167381974248928, 0.8383404864091559, 0.9256080114449213, 0.8097281831187411, 0.6022889842632332, 0.4663805436337625, 0.1473533619456366, 0.13733905579399142, 0.13447782546494993, 0.13161659513590845, 0.13447782546494993, 0.13733905579399142, 0.1402002861230329, 0.14163090128755365, 0.1459227467811159, 0.15164520743919885, 0.16452074391988555, 0.19456366237482117, 0.22031473533619456, 0.2832618025751073, 0.3133047210300429, 0.3748211731044349, 0.4406294706723891, 0.5522174535050072, 0.6609442060085837, 0.8025751072961373, 0.8569384835479256], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NTF2.gap.json b/pfam_gap_rates/NTF2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e380ba112cae183ca7b93710080e8f331426f70
--- /dev/null
+++ b/pfam_gap_rates/NTF2.gap.json
@@ -0,0 +1 @@
+{"family": "NTF2", "n_seqs": 1269, "length": 168, "gap_rates": [0.48699763593380613, 0.22695035460992907, 0.15602836879432624, 0.11347517730496454, 0.08983451536643026, 0.07959022852639874, 0.07565011820330969, 0.07486209613869188, 0.07486209613869188, 0.07486209613869188, 0.07407407407407407, 0.07171000788022065, 0.07013396375098503, 0.07013396375098503, 0.07013396375098503, 0.9267139479905437, 0.7588652482269503, 0.0677698975571316, 0.06698187549251379, 0.06698187549251379, 0.09219858156028368, 0.062253743104806934, 0.0591016548463357, 0.05831363278171789, 0.05831363278171789, 0.062253743104806934, 0.7123719464144996, 0.06461780929866036, 0.05358550039401103, 0.05594956658786446, 0.05279747832939322, 0.045705279747832936, 0.04334121355397951, 0.04334121355397951, 0.04412923561859732, 0.04412923561859732, 0.04885736800630418, 0.04097714736012608, 0.5634357762017337, 0.6193853427895981, 0.7848699763593381, 0.8668242710795903, 0.8739164696611506, 0.8794326241134752, 0.8841607565011821, 0.8967691095350669, 0.904649330181245, 0.9085894405043341, 0.913317572892041, 0.91725768321513, 0.9211977935382191, 0.9259259259259259, 0.9377462568951931, 0.9495665878644602, 0.9290780141843972, 0.9219858156028369, 0.9188337273443656, 0.9156816390858944, 0.9101654846335697, 0.9070133963750985, 0.9022852639873916, 0.8865248226950354, 0.8810086682427108, 0.876280535855004, 0.8715524034672971, 0.8100866824271079, 0.7635933806146572, 0.5894405043341213, 0.5587076438140268, 0.5145784081954294, 0.04334121355397951, 0.038613081166272656, 0.038613081166272656, 0.037825059101654845, 0.036249014972419225, 0.037037037037037035, 0.036249014972419225, 0.036249014972419225, 0.036249014972419225, 0.03546099290780142, 0.03546099290780142, 0.0338849487785658, 0.03152088258471237, 0.03546099290780142, 0.03467297084318361, 0.03467297084318361, 0.0338849487785658, 0.038613081166272656, 0.26792750197005516, 0.9125295508274232, 0.9495665878644602, 0.9345941686367218, 0.8928289992119779, 0.30023640661938533, 0.9054373522458629, 0.05200945626477541, 0.0425531914893617, 0.039401103230890466, 0.038613081166272656, 0.037825059101654845, 0.03546099290780142, 0.036249014972419225, 0.03546099290780142, 0.037825059101654845, 0.037825059101654845, 0.55397951142632, 0.8463356973995272, 0.9180457052797478, 0.9495665878644602, 0.8613081166272656, 0.8226950354609929, 0.6800630417651694, 0.6966115051221434, 0.1875492513790386, 0.1607565011820331, 0.13317572892040977, 0.05988967691095351, 0.04334121355397951, 0.04018912529550828, 0.038613081166272656, 0.038613081166272656, 0.038613081166272656, 0.03546099290780142, 0.036249014972419225, 0.036249014972419225, 0.03546099290780142, 0.036249014972419225, 0.036249014972419225, 0.04097714736012608, 0.04097714736012608, 0.04176516942474389, 0.0425531914893617, 0.04491725768321513, 0.10638297872340426, 0.5130023640661938, 0.07801418439716312, 0.8502758077226162, 0.9078014184397163, 0.8226950354609929, 0.05594956658786446, 0.05358550039401103, 0.05358550039401103, 0.05200945626477541, 0.054373522458628844, 0.05673758865248227, 0.05831363278171789, 0.05831363278171789, 0.05831363278171789, 0.05988967691095351, 0.06067769897557131, 0.062253743104806934, 0.07328605200945626, 0.8817966903073287, 0.9472025216706068, 0.8400315208825847, 0.5973207249802994, 0.11977935382190702, 0.11426319936958235, 0.11505122143420016, 0.11662726556343578, 0.12056737588652482, 0.12371946414499606, 0.13002364066193853, 0.1347517730496454, 0.15681639085894405, 0.18203309692671396, 0.25847123719464143, 0.3829787234042553], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NUC153.gap.json b/pfam_gap_rates/NUC153.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1a23610a32c252ae50050c1dceefd326f432d3e
--- /dev/null
+++ b/pfam_gap_rates/NUC153.gap.json
@@ -0,0 +1 @@
+{"family": "NUC153", "n_seqs": 577, "length": 29, "gap_rates": [0.010398613518197574, 0.008665511265164644, 0.0034662045060658577, 0.0034662045060658577, 0.0017331022530329288, 0.0, 0.0, 0.0, 0.005199306759098787, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006932409012131715, 0.006932409012131715, 0.010398613518197574, 0.010398613518197574, 0.012131715771230503, 0.012131715771230503, 0.01733102253032929, 0.036395147313691506, 0.10398613518197573, 0.15251299826689774, 0.17850953206239167, 0.3188908145580589, 0.5961871750433275], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NUDE_C.gap.json b/pfam_gap_rates/NUDE_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5eb34dc6e3b0a4c1a894bd3612d6d5219f616e29
--- /dev/null
+++ b/pfam_gap_rates/NUDE_C.gap.json
@@ -0,0 +1 @@
+{"family": "NUDE_C", "n_seqs": 189, "length": 212, "gap_rates": [0.17989417989417988, 0.12169312169312169, 0.06349206349206349, 0.05291005291005291, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.026455026455026454, 0.026455026455026454, 0.021164021164021163, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.6772486772486772, 0.6613756613756614, 0.6613756613756614, 0.656084656084656, 0.015873015873015872, 0.015873015873015872, 0.021164021164021163, 0.015873015873015872, 0.015873015873015872, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.021164021164021163, 0.0582010582010582, 0.0582010582010582, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06878306878306878, 0.06878306878306878, 0.06878306878306878, 0.08465608465608465, 0.2698412698412698, 0.15343915343915343, 0.15873015873015872, 0.2698412698412698, 0.25396825396825395, 0.2698412698412698, 0.2804232804232804, 0.8941798941798942, 0.9417989417989417, 0.8148148148148148, 0.5132275132275133, 0.455026455026455, 0.41798941798941797, 0.3862433862433862, 0.3492063492063492, 0.3492063492063492, 0.3492063492063492, 0.3386243386243386, 0.31216931216931215, 0.8888888888888888, 0.746031746031746, 0.2275132275132275, 0.1746031746031746, 0.15343915343915343, 0.14814814814814814, 0.13756613756613756, 0.13756613756613756, 0.8253968253968254, 0.9470899470899471, 0.7566137566137566, 0.35978835978835977, 0.20634920634920634, 0.2275132275132275, 0.17989417989417988, 0.15873015873015872, 0.14285714285714285, 0.1164021164021164, 0.12169312169312169, 0.12169312169312169, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.13227513227513227, 0.14285714285714285, 0.43386243386243384, 0.6931216931216931, 0.7407407407407407, 0.7248677248677249, 0.6613756613756614, 0.15343915343915343, 0.14285714285714285, 0.13756613756613756, 0.15873015873015872, 0.1693121693121693, 0.328042328042328, 0.19047619047619047, 0.15873015873015872, 0.1693121693121693, 0.15873015873015872, 0.1693121693121693, 0.1746031746031746, 0.47619047619047616, 0.4021164021164021, 0.7513227513227513, 0.9312169312169312, 0.9470899470899471, 0.9365079365079365, 0.7777777777777778, 0.7142857142857143, 0.21164021164021163, 0.19576719576719576, 0.25396825396825395, 0.5079365079365079, 0.455026455026455, 0.7724867724867724, 0.8571428571428571, 0.6190476190476191, 0.2222222222222222, 0.21164021164021163, 0.20105820105820105, 0.17989417989417988, 0.164021164021164, 0.1693121693121693, 0.1693121693121693, 0.1693121693121693, 0.1746031746031746, 0.1746031746031746, 0.1746031746031746, 0.17989417989417988, 0.19047619047619047, 0.19576719576719576, 0.20105820105820105, 0.5661375661375662, 0.5925925925925926, 0.9312169312169312, 0.9470899470899471, 0.6190476190476191, 0.5767195767195767, 0.5502645502645502, 0.21693121693121692, 0.21164021164021163, 0.21693121693121692, 0.2222222222222222, 0.2275132275132275, 0.23809523809523808, 0.24867724867724866, 0.2751322751322751, 0.3439153439153439, 0.30687830687830686, 0.30158730158730157, 0.30158730158730157, 0.30687830687830686, 0.31216931216931215, 0.32275132275132273, 0.3333333333333333, 0.3544973544973545, 0.37566137566137564, 0.38095238095238093, 0.3915343915343915, 0.3915343915343915, 0.41798941798941797, 0.4497354497354497, 0.544973544973545, 0.5502645502645502, 0.544973544973545, 0.5608465608465608, 0.7513227513227513, 0.8624338624338624, 0.8994708994708994, 0.9365079365079365, 0.8624338624338624, 0.7724867724867724, 0.7195767195767195, 0.5555555555555556, 0.5925925925925926, 0.5978835978835979, 0.5925925925925926, 0.6031746031746031, 0.6031746031746031, 0.6190476190476191, 0.6243386243386243, 0.6402116402116402, 0.6349206349206349, 0.6507936507936508, 0.6772486772486772, 0.708994708994709, 0.7301587301587301, 0.7566137566137566, 0.8042328042328042, 0.8359788359788359, 0.8412698412698413, 0.8624338624338624, 0.9047619047619048, 0.9153439153439153, 0.9417989417989417], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NUDIX_4.gap.json b/pfam_gap_rates/NUDIX_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..291952e392628282df8897825f176dac78daee53
--- /dev/null
+++ b/pfam_gap_rates/NUDIX_4.gap.json
@@ -0,0 +1 @@
+{"family": "NUDIX_4", "n_seqs": 1426, "length": 160, "gap_rates": [0.8513323983169705, 0.379382889200561, 0.20196353436185133, 0.15007012622720897, 0.12552594670406733, 0.11570827489481066, 0.09817671809256662, 0.07503506311360449, 0.5392706872370266, 0.03506311360448808, 0.020336605890603085, 0.0070126227208976155, 0.005610098176718092, 0.004908835904628331, 0.004207573632538569, 0.004207573632538569, 0.0035063113604488078, 0.004207573632538569, 0.0035063113604488078, 0.01332398316970547, 0.014025245441795231, 0.0021037868162692847, 0.0021037868162692847, 0.0021037868162692847, 0.0021037868162692847, 0.0021037868162692847, 0.0021037868162692847, 0.0021037868162692847, 0.0035063113604488078, 0.0021037868162692847, 0.004908835904628331, 0.11711079943899018, 0.10869565217391304, 0.8814866760168303, 0.9474053295932678, 0.5063113604488079, 0.04628330995792426, 0.05890603085553997, 0.047685834502103785, 0.0785413744740533, 0.034361851332398316, 0.6304347826086957, 0.11360448807854137, 0.08906030855539972, 0.8260869565217391, 0.8730715287517532, 0.9151472650771388, 0.9354838709677419, 0.8983169705469846, 0.8436185133239832, 0.8057503506311361, 0.09046283309957924, 0.08976157082748948, 0.08064516129032258, 0.23632538569424966, 0.5631136044880786, 0.8751753155680224, 0.9438990182328191, 0.9221598877980365, 0.6079943899018233, 0.5112201963534362, 0.21669004207573633, 0.2615708274894811, 0.06661991584852735, 0.04207573632538569, 0.04488078541374474, 0.211781206171108, 0.847124824684432, 0.1605890603085554, 0.12201963534361851, 0.03576437587657784, 0.6872370266479664, 0.8828892005610098, 0.9368863955119214, 0.9488078541374474, 0.9067321178120618, 0.8022440392706872, 0.6086956521739131, 0.0729312762973352, 0.08625525946704067, 0.13464235624123422, 0.030855539971949508, 0.8499298737727911, 0.9298737727910238, 0.5301542776998598, 0.01332398316970547, 0.02244039270687237, 0.9109396914446003, 0.1774193548387097, 0.14936886395511922, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8772791023842917, 0.0, 0.011220196353436185, 0.12272089761570827, 0.010518934081346423, 0.7531556802244039, 0.7903225806451613, 0.8660589060308556, 0.9228611500701263, 0.9446002805049089, 0.894109396914446, 0.832398316970547, 0.7720897615708275, 0.6311360448807855, 0.011921458625525946, 0.09747545582047686, 0.1185133239831697, 0.9228611500701263, 0.44600280504908835, 0.21107994389901824, 0.2664796633941094, 0.270687237026648, 0.2826086956521739, 0.34712482468443195, 0.07713884992987377, 0.4438990182328191, 0.7194950911640954, 0.8737727910238429, 0.9361851332398317, 0.9137447405329593, 0.7868162692847125, 0.5575035063113605, 0.34572230014025246, 0.04207573632538569, 0.038569424964936885, 0.021739130434782608, 0.018934081346423562, 0.03295932678821879, 0.0364656381486676, 0.025245441795231416, 0.02244039270687237, 0.024544179523141654, 0.02314165497896213, 0.9467040673211781, 0.02244039270687237, 0.021037868162692847, 0.021739130434782608, 0.020336605890603085, 0.020336605890603085, 0.021037868162692847, 0.02314165497896213, 0.023842917251051893, 0.025245441795231416, 0.04838709677419355, 0.0638148667601683, 0.08695652173913043, 0.14516129032258066, 0.3330995792426367, 0.9144460028050491], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Na_H_antiport_2.gap.json b/pfam_gap_rates/Na_H_antiport_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..188dd9cc6907f722363b4f23c13f1dbb4cffdfeb
--- /dev/null
+++ b/pfam_gap_rates/Na_H_antiport_2.gap.json
@@ -0,0 +1 @@
+{"family": "Na_H_antiport_2", "n_seqs": 225, "length": 93, "gap_rates": [0.13333333333333333, 0.1111111111111111, 0.06666666666666667, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.05333333333333334, 0.044444444444444446, 0.04, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.92, 0.9333333333333333, 0.9422222222222222, 0.9422222222222222, 0.9288888888888889, 0.9155555555555556, 0.017777777777777778, 0.017777777777777778, 0.022222222222222223, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.017777777777777778, 0.017777777777777778, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.02666666666666667, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.017777777777777778, 0.022222222222222223, 0.022222222222222223, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.035555555555555556, 0.05333333333333334, 0.12, 0.21333333333333335], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Na_trans_cytopl.gap.json b/pfam_gap_rates/Na_trans_cytopl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea4b7b726639f53a5d652dfe3e4896608bad5e9c
--- /dev/null
+++ b/pfam_gap_rates/Na_trans_cytopl.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Neur_chan_memb.gap.json b/pfam_gap_rates/Neur_chan_memb.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd668743c0cb8bf9185b11a180834bcffa07c433
--- /dev/null
+++ b/pfam_gap_rates/Neur_chan_memb.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Neurochondrin.gap.json b/pfam_gap_rates/Neurochondrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf813d0086dfec02fda761ab77a3b38536f7ab6e
--- /dev/null
+++ b/pfam_gap_rates/Neurochondrin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NfeD.gap.json b/pfam_gap_rates/NfeD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86335d5c75ea975304a52561e4fd56c75fdb05df
--- /dev/null
+++ b/pfam_gap_rates/NfeD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nha1_C.gap.json b/pfam_gap_rates/Nha1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d455aff5bc5147a9515ed5d362d1ae714f9e2d89
--- /dev/null
+++ b/pfam_gap_rates/Nha1_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ni_hydr_CYTB.gap.json b/pfam_gap_rates/Ni_hydr_CYTB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49a67f175abca285b87578ce9d12657a9c9bcaf3
--- /dev/null
+++ b/pfam_gap_rates/Ni_hydr_CYTB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nicastrin.gap.json b/pfam_gap_rates/Nicastrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb4161715537c0da00dda5e0e47fdb92db623b8e
--- /dev/null
+++ b/pfam_gap_rates/Nicastrin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NlpE.gap.json b/pfam_gap_rates/NlpE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7238e5866d8802474b2bdbbaa9eba4b2ead17e3
--- /dev/null
+++ b/pfam_gap_rates/NlpE.gap.json
@@ -0,0 +1 @@
+{"family": "NlpE", "n_seqs": 191, "length": 111, "gap_rates": [0.06282722513089005, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.04712041884816754, 0.041884816753926704, 0.03664921465968586, 0.041884816753926704, 0.02617801047120419, 0.02617801047120419, 0.031413612565445025, 0.02617801047120419, 0.010471204188481676, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.02617801047120419, 0.015706806282722512, 0.9162303664921466, 0.9267015706806283, 0.9319371727748691, 0.9162303664921466, 0.9109947643979057, 0.005235602094240838, 0.010471204188481676, 0.9162303664921466, 0.9476439790575916, 0.9424083769633508, 0.9162303664921466, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.0, 0.0, 0.0, 0.0, 0.005235602094240838, 0.010471204188481676, 0.005235602094240838, 0.010471204188481676, 0.010471204188481676, 0.8010471204188482, 0.15706806282722513, 0.7853403141361257, 0.9424083769633508, 0.7172774869109948, 0.04712041884816754, 0.020942408376963352, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.2774869109947644, 0.806282722513089, 0.8481675392670157, 0.8534031413612565, 0.8481675392670157, 0.837696335078534, 0.7905759162303665, 0.27225130890052357, 0.015706806282722512, 0.010471204188481676, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.20418848167539266, 0.9057591623036649, 0.837696335078534, 0.06282722513089005, 0.06282722513089005, 0.041884816753926704, 0.8848167539267016, 0.04712041884816754, 0.031413612565445025, 0.03664921465968586, 0.041884816753926704, 0.041884816753926704, 0.04712041884816754, 0.04712041884816754, 0.8743455497382199, 0.7120418848167539, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.08376963350785341, 0.8743455497382199, 0.05759162303664921, 0.05759162303664921, 0.07329842931937172, 0.07853403141361257, 0.07853403141361257, 0.08376963350785341, 0.09424083769633508, 0.09947643979057591, 0.11518324607329843, 0.1518324607329843, 0.225130890052356, 0.29842931937172773, 0.38219895287958117, 0.7591623036649214], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NosL.gap.json b/pfam_gap_rates/NosL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2d94f459fbbb8a37b674fff9caae79a0934220d
--- /dev/null
+++ b/pfam_gap_rates/NosL.gap.json
@@ -0,0 +1 @@
+{"family": "NosL", "n_seqs": 322, "length": 169, "gap_rates": [0.9316770186335404, 0.6304347826086957, 0.577639751552795, 0.5527950310559007, 0.5403726708074534, 0.5372670807453416, 0.5372670807453416, 0.5434782608695652, 0.562111801242236, 0.6118012422360248, 0.8260869565217391, 0.7670807453416149, 0.7111801242236024, 0.562111801242236, 0.5186335403726708, 0.4813664596273292, 0.4161490683229814, 0.37888198757763975, 0.30434782608695654, 0.2795031055900621, 0.2080745341614907, 0.19875776397515527, 0.18633540372670807, 0.9440993788819876, 0.13975155279503104, 0.11801242236024845, 0.09006211180124224, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.08385093167701864, 0.07453416149068323, 0.07453416149068323, 0.06832298136645963, 0.06832298136645963, 0.07763975155279502, 0.13975155279503104, 0.16149068322981366, 0.12732919254658384, 0.08385093167701864, 0.059006211180124224, 0.062111801242236024, 0.055900621118012424, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.052795031055900624, 0.052795031055900624, 0.6304347826086957, 0.9099378881987578, 0.12111801242236025, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.037267080745341616, 0.037267080745341616, 0.040372670807453416, 0.09006211180124224, 0.059006211180124224, 0.052795031055900624, 0.062111801242236024, 0.062111801242236024, 0.055900621118012424, 0.055900621118012424, 0.059006211180124224, 0.06832298136645963, 0.8198757763975155, 0.8322981366459627, 0.8913043478260869, 0.8695652173913043, 0.8229813664596274, 0.8198757763975155, 0.21428571428571427, 0.10869565217391304, 0.8354037267080745, 0.049689440993788817, 0.040372670807453416, 0.034161490683229816, 0.031055900621118012, 0.027950310559006212, 0.021739130434782608, 0.021739130434782608, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.027950310559006212, 0.8881987577639752, 0.6086956521739131, 0.6055900621118012, 0.6118012422360248, 0.6086956521739131, 0.9409937888198758, 0.9409937888198758, 0.9440993788819876, 0.9440993788819876, 0.9440993788819876, 0.9409937888198758, 0.9409937888198758, 0.9409937888198758, 0.6055900621118012, 0.6055900621118012, 0.5993788819875776, 0.6428571428571429, 0.062111801242236024, 0.024844720496894408, 0.021739130434782608, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.006211180124223602, 0.009316770186335404, 0.031055900621118012, 0.018633540372670808, 0.018633540372670808, 0.040372670807453416, 0.049689440993788817, 0.040372670807453416, 0.034161490683229816, 0.034161490683229816, 0.034161490683229816, 0.034161490683229816, 0.7204968944099379, 0.037267080745341616, 0.037267080745341616, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.040372670807453416, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.059006211180124224, 0.055900621118012424, 0.06521739130434782, 0.062111801242236024, 0.062111801242236024, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.07453416149068323, 0.07763975155279502, 0.08695652173913043, 0.09006211180124224, 0.7981366459627329, 0.08695652173913043, 0.09006211180124224, 0.09316770186335403, 0.09627329192546584, 0.09937888198757763, 0.10248447204968944, 0.15838509316770186, 0.2515527950310559, 0.34782608695652173, 0.39751552795031053, 0.4906832298136646, 0.5900621118012422, 0.8260869565217391], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Not3.gap.json b/pfam_gap_rates/Not3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d5adc19546d6cd9b875ce827e548266c7da9ea3
--- /dev/null
+++ b/pfam_gap_rates/Not3.gap.json
@@ -0,0 +1 @@
+{"family": "Not3", "n_seqs": 364, "length": 250, "gap_rates": [0.8104395604395604, 0.23351648351648352, 0.20054945054945056, 0.19230769230769232, 0.18956043956043955, 0.19230769230769232, 0.14835164835164835, 0.13736263736263737, 0.13186813186813187, 0.12912087912087913, 0.12912087912087913, 0.12912087912087913, 0.12912087912087913, 0.12912087912087913, 0.12637362637362637, 0.12637362637362637, 0.12912087912087913, 0.12912087912087913, 0.12912087912087913, 0.12912087912087913, 0.12912087912087913, 0.12912087912087913, 0.12912087912087913, 0.12912087912087913, 0.12637362637362637, 0.12637362637362637, 0.12087912087912088, 0.11538461538461539, 0.11538461538461539, 0.11263736263736264, 0.1043956043956044, 0.10714285714285714, 0.10714285714285714, 0.11538461538461539, 0.11263736263736264, 0.10714285714285714, 0.1043956043956044, 0.10164835164835165, 0.09615384615384616, 0.09340659340659341, 0.09340659340659341, 0.09065934065934066, 0.08516483516483517, 0.08241758241758242, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Nramp.gap.json b/pfam_gap_rates/Nramp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73ed0b193cd09068b10aa8f007ca03969768c623
--- /dev/null
+++ b/pfam_gap_rates/Nramp.gap.json
@@ -0,0 +1 @@
+{"family": "Nramp", "n_seqs": 2293, "length": 426, "gap_rates": [0.5137374618403838, 0.3632795464457043, 0.2817269952027911, 0.255124291321413, 0.2381160052333188, 0.22808547754034017, 0.22154382904491932, 0.2132577409507196, 0.20497165285651983, 0.19581334496293065, 0.18752725686873092, 0.1757522895769734, 0.17444395987788922, 0.17226341037941562, 0.16877453118185784, 0.16528565198430004, 0.141735717400785, 0.1360662887047536, 0.13257740950719582, 0.13170518970780637, 0.13083296990841692, 0.12996075010902747, 0.1303968600087222, 0.12908853030963802, 0.12603576101177497, 0.12559965111208024, 0.1247274313126908, 0.12429132141299608, 0.12429132141299608, 0.12429132141299608, 0.12385521151330135, 0.12341910161360663, 0.12211077191452246, 0.12211077191452246, 0.12123855211513301, 0.12123855211513301, 0.12167466201482774, 0.12080244221543829, 0.12254688181421718, 0.12211077191452246, 0.1229829917139119, 0.12341910161360663, 0.12385521151330135, 0.12690798081116442, 0.12603576101177497, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Nsp1_C.gap.json b/pfam_gap_rates/Nsp1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2fba41b197fdfee57d4d6b2669caaf987562c8e2
--- /dev/null
+++ b/pfam_gap_rates/Nsp1_C.gap.json
@@ -0,0 +1 @@
+{"family": "Nsp1_C", "n_seqs": 302, "length": 116, "gap_rates": [0.9172185430463576, 0.7251655629139073, 0.5927152317880795, 0.5033112582781457, 0.44370860927152317, 0.40728476821192056, 0.3509933774834437, 0.2781456953642384, 0.2582781456953642, 0.19205298013245034, 0.17880794701986755, 0.347682119205298, 0.25496688741721857, 0.5066225165562914, 0.09602649006622517, 0.09271523178807947, 0.07947019867549669, 0.07947019867549669, 0.0695364238410596, 0.046357615894039736, 0.03642384105960265, 0.03642384105960265, 0.03642384105960265, 0.03642384105960265, 0.03642384105960265, 0.033112582781456956, 0.029801324503311258, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.019867549668874173, 0.023178807947019868, 0.019867549668874173, 0.016556291390728478, 0.013245033112582781, 0.016556291390728478, 0.016556291390728478, 0.019867549668874173, 0.019867549668874173, 0.023178807947019868, 0.023178807947019868, 0.026490066225165563, 0.026490066225165563, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.023178807947019868, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.04304635761589404, 0.046357615894039736, 0.08609271523178808, 0.09933774834437085, 0.11589403973509933, 0.12251655629139073, 0.1986754966887417, 0.2682119205298013, 0.40397350993377484, 0.5198675496688742, 0.6125827814569537, 0.6887417218543046, 0.7483443708609272, 0.8178807947019867, 0.8675496688741722, 0.8973509933774835, 0.9238410596026491], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NtCtMGAM_N.gap.json b/pfam_gap_rates/NtCtMGAM_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c82c85180ba666cf6ff0e5e259a12eb597d5119
--- /dev/null
+++ b/pfam_gap_rates/NtCtMGAM_N.gap.json
@@ -0,0 +1 @@
+{"family": "NtCtMGAM_N", "n_seqs": 647, "length": 156, "gap_rates": [0.6877897990726429, 0.4312210200927357, 0.35857805255023184, 0.30139103554868624, 0.2642967542503864, 0.22256568778979907, 0.21020092735703247, 0.20247295208655333, 0.19629057187017002, 0.18238021638330756, 0.16537867078825347, 0.9242658423493045, 0.4281298299845441, 0.2689335394126739, 0.13137557959814528, 0.11901081916537867, 0.10510046367851623, 0.09891808346213292, 0.09582689335394126, 0.08346213292117466, 0.080370942812983, 0.07727975270479134, 0.07418856259659969, 0.0695517774343122, 0.0695517774343122, 0.0695517774343122, 0.07109737248840804, 0.0695517774343122, 0.06800618238021638, 0.06491499227202473, 0.06491499227202473, 0.07264296754250386, 0.09582689335394126, 0.05564142194744977, 0.05255023183925812, 0.05100463678516229, 0.04945904173106646, 0.05100463678516229, 0.0401854714064915, 0.03709428129829984, 0.03554868624420402, 0.9026275115919629, 0.919629057187017, 0.9273570324574961, 0.9149922720247295, 0.8979907264296755, 0.04327666151468315, 0.09119010819165378, 0.07573415765069552, 0.03554868624420402, 0.030911901081916538, 0.027820710973724884, 0.027820710973724884, 0.027820710973724884, 0.02627511591962906, 0.027820710973724884, 0.0633693972179289, 0.0571870170015456, 0.20865533230293662, 0.160741885625966, 0.1437403400309119, 0.10819165378670788, 0.10510046367851623, 0.125193199381762, 0.31993817619783615, 0.3168469860896445, 0.8315301391035549, 0.8469860896445132, 0.8639876352395672, 0.8763523956723338, 0.8825347758887172, 0.8964451313755796, 0.9072642967542504, 0.9258114374034003, 0.9489953632148377, 0.9381761978361669, 0.9134466769706336, 0.9026275115919629, 0.8887171561051005, 0.8778979907264297, 0.8670788253477589, 0.8562596599690881, 0.8408037094281299, 0.8160741885625966, 0.29520865533230295, 0.38639876352395675, 0.29675425038639874, 0.3029366306027821, 0.18083462132921174, 0.10973724884080371, 0.06800618238021638, 0.1143740340030912, 0.3786707882534776, 0.33075734157650694, 0.2689335394126739, 0.027820710973724884, 0.02627511591962906, 0.02472952086553323, 0.023183925811437404, 0.023183925811437404, 0.02009273570324575, 0.021638330757341576, 0.9397217928902627, 0.8794435857805255, 0.017001545595054096, 0.02936630602782071, 0.8438948995363215, 0.021638330757341576, 0.02009273570324575, 0.02009273570324575, 0.02009273570324575, 0.02009273570324575, 0.02009273570324575, 0.01854714064914992, 0.01854714064914992, 0.023183925811437404, 0.0401854714064915, 0.04173106646058733, 0.02936630602782071, 0.021638330757341576, 0.023183925811437404, 0.02936630602782071, 0.02936630602782071, 0.02936630602782071, 0.02936630602782071, 0.9258114374034003, 0.09119010819165378, 0.0571870170015456, 0.03554868624420402, 0.8377125193199382, 0.8423493044822257, 0.8624420401854714, 0.9319938176197836, 0.9428129829984544, 0.9474497681607419, 0.9474497681607419, 0.9335394126738794, 0.9227202472952086, 0.8562596599690881, 0.8377125193199382, 0.8361669242658424, 0.03400309119010819, 0.03245749613601236, 0.03245749613601236, 0.03400309119010819, 0.03400309119010819, 0.03554868624420402, 0.03863987635239567, 0.03863987635239567, 0.03863987635239567, 0.0401854714064915, 0.04173106646058733, 0.05409582689335394, 0.05873261205564142, 0.08809891808346214, 0.23802163833075735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nuc_deoxyri_tr2.gap.json b/pfam_gap_rates/Nuc_deoxyri_tr2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e9b2a2c93044b029fce4e26ea7c17b2eaa48cb7
--- /dev/null
+++ b/pfam_gap_rates/Nuc_deoxyri_tr2.gap.json
@@ -0,0 +1 @@
+{"family": "Nuc_deoxyri_tr2", "n_seqs": 163, "length": 115, "gap_rates": [0.8588957055214724, 0.2392638036809816, 0.049079754601226995, 0.018404907975460124, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.8773006134969326, 0.5766871165644172, 0.558282208588957, 0.5030674846625767, 0.024539877300613498, 0.012269938650306749, 0.006134969325153374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2822085889570552, 0.27607361963190186, 0.3374233128834356, 0.3374233128834356, 0.8282208588957055, 0.3374233128834356, 0.15950920245398773, 0.6012269938650306, 0.5337423312883436, 0.6441717791411042, 0.6503067484662577, 0.6196319018404908, 0.4171779141104294, 0.024539877300613498, 0.0, 0.012269938650306749, 0.018404907975460124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06748466257668712, 0.049079754601226995, 0.049079754601226995, 0.12269938650306748, 0.1411042944785276, 0.6196319018404908, 0.6196319018404908, 0.588957055214724, 0.5644171779141104, 0.50920245398773, 0.4723926380368098, 0.4662576687116564, 0.4601226993865031, 0.4539877300613497, 0.44785276073619634, 0.44171779141104295, 0.4233128834355828, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006134969325153374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.9386503067484663, 0.0, 0.012269938650306749, 0.012269938650306749, 0.0, 0.0, 0.0, 0.0, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.012269938650306749, 0.03067484662576687, 0.03067484662576687, 0.04294478527607362, 0.6932515337423313, 0.0736196319018405, 0.0736196319018405, 0.07975460122699386, 0.07975460122699386, 0.08588957055214724, 0.08588957055214724, 0.12269938650306748, 0.2392638036809816, 0.31901840490797545, 0.44171779141104295, 0.5644171779141104], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nucleoporin2.gap.json b/pfam_gap_rates/Nucleoporin2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..126074672dedab9a8f95c2834ac0e228f2e29aff
--- /dev/null
+++ b/pfam_gap_rates/Nucleoporin2.gap.json
@@ -0,0 +1 @@
+{"family": "Nucleoporin2", "n_seqs": 424, "length": 156, "gap_rates": [0.25471698113207547, 0.14150943396226415, 0.1320754716981132, 0.12264150943396226, 0.12028301886792453, 0.10613207547169812, 0.10377358490566038, 0.10377358490566038, 0.09198113207547169, 0.09433962264150944, 0.09433962264150944, 0.09669811320754718, 0.08962264150943396, 0.08726415094339622, 0.08254716981132075, 0.08018867924528301, 0.07547169811320754, 0.07547169811320754, 0.7900943396226415, 0.8018867924528302, 0.6580188679245284, 0.06367924528301887, 0.06367924528301887, 0.03537735849056604, 0.0330188679245283, 0.04009433962264151, 0.030660377358490566, 0.030660377358490566, 0.030660377358490566, 0.02830188679245283, 0.030660377358490566, 0.030660377358490566, 0.030660377358490566, 0.07075471698113207, 0.0330188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.025943396226415096, 0.025943396226415096, 0.049528301886792456, 0.025943396226415096, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02122641509433962, 0.02122641509433962, 0.02122641509433962, 0.01650943396226415, 0.01650943396226415, 0.8844339622641509, 0.01650943396226415, 0.01650943396226415, 0.625, 0.9221698113207547, 0.9457547169811321, 0.6533018867924528, 0.6202830188679245, 0.6061320754716981, 0.02122641509433962, 0.054245283018867926, 0.030660377358490566, 0.025943396226415096, 0.025943396226415096, 0.02830188679245283, 0.025943396226415096, 0.025943396226415096, 0.025943396226415096, 0.025943396226415096, 0.025943396226415096, 0.025943396226415096, 0.025943396226415096, 0.03537735849056604, 0.03537735849056604, 0.10377358490566038, 0.8962264150943396, 0.09198113207547169, 0.07075471698113207, 0.9174528301886793, 0.9481132075471698, 0.9174528301886793, 0.0660377358490566, 0.05188679245283019, 0.054245283018867926, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.025943396226415096, 0.025943396226415096, 0.025943396226415096, 0.025943396226415096, 0.025943396226415096, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.04009433962264151, 0.030660377358490566, 0.03773584905660377, 0.0330188679245283, 0.03773584905660377, 0.9410377358490566, 0.9363207547169812, 0.24764150943396226, 0.27358490566037735, 0.5707547169811321, 0.5400943396226415, 0.2617924528301887, 0.23349056603773585, 0.1957547169811321, 0.16745283018867924, 0.1320754716981132, 0.10613207547169812, 0.09669811320754718, 0.07783018867924528, 0.0660377358490566, 0.0589622641509434, 0.06367924528301887, 0.05660377358490566, 0.049528301886792456, 0.05188679245283019, 0.054245283018867926, 0.0589622641509434, 0.06132075471698113, 0.06132075471698113, 0.0660377358490566, 0.07547169811320754, 0.0660377358490566, 0.07075471698113207, 0.07075471698113207, 0.5259433962264151, 0.5259433962264151, 0.5165094339622641, 0.07075471698113207, 0.06839622641509434, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.06839622641509434, 0.08726415094339622, 0.07783018867924528, 0.06839622641509434, 0.07075471698113207, 0.08254716981132075, 0.07783018867924528, 0.07075471698113207, 0.07075471698113207, 0.07547169811320754, 0.07783018867924528, 0.09198113207547169, 0.10377358490566038, 0.12028301886792453, 0.16037735849056603], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nucleoporin_FG.gap.json b/pfam_gap_rates/Nucleoporin_FG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ac28393616dd19e91e6b46d8229c23fe36b7b8b
--- /dev/null
+++ b/pfam_gap_rates/Nucleoporin_FG.gap.json
@@ -0,0 +1 @@
+{"family": "Nucleoporin_FG", "n_seqs": 2826, "length": 123, "gap_rates": [0.7576079263977353, 0.5902335456475584, 0.5237084217975938, 0.4893842887473461, 0.8956121726822364, 0.9409058740268932, 0.8499646142958245, 0.7084217975937721, 0.5049539985845718, 0.3619957537154989, 0.2806086341118188, 0.23991507430997877, 0.20983722576079264, 0.18435951875442322, 0.16348195329087048, 0.13906581740976645, 0.12845010615711253, 0.11641896673743808, 0.10828025477707007, 0.10120311394196745, 0.09235668789808917, 0.08740268931351734, 0.08174097664543524, 0.07360226468506724, 0.719037508846426, 0.8506723283793347, 0.93241330502477, 0.8934890304317056, 0.7958244869072895, 0.6004953998584572, 0.36447275300778487, 0.23849964614295824, 0.1464968152866242, 0.07784854918612881, 0.04670912951167728, 0.03113941967445152, 0.03149327671620665, 0.02937013446567587, 0.028308563340410473, 0.8389950460014154, 0.9285208775654635, 0.8899504600141542, 0.7848549186128804, 0.4681528662420382, 0.4048124557678698, 0.22611464968152867, 0.16560509554140126, 0.08952583156404813, 0.059447983014861996, 0.043170559094125975, 0.033616418966737435, 0.036093418259023353, 0.03503184713375796, 0.04210898796886058, 0.11571125265392782, 0.8460721868365181, 0.2791932059447983, 0.0697098372257608, 0.0399858457183298, 0.03184713375796178, 0.02653927813163482, 0.3605803255484784, 0.72965322009908, 0.8573956121726822, 0.924274593064402, 0.948690728945506, 0.8913658881811748, 0.807855626326964, 0.6153573956121727, 0.19532908704883228, 0.09978768577494693, 0.049893842887473464, 0.02724699221514508, 0.020169851380042462, 0.013446567586694975, 0.009200283085633405, 0.00778485491861288, 0.00813871196036801, 0.008492569002123142, 0.009907997169143666, 0.009200283085633405, 0.01167728237791932, 0.013446567586694975, 0.01875442321302194, 0.02937013446567587, 0.0491861288039632, 0.09129511677282377, 0.1542816702052371, 0.28874734607218683, 0.44019815994338285, 0.7473460721868365, 0.8835810332625619, 0.9483368719037509, 0.921443736730361, 0.8262561924982307, 0.6464968152866242, 0.10368011323425336, 0.08634111818825195, 0.07607926397735315, 0.07289455060155697, 0.0697098372257608, 0.07360226468506724, 0.0835102618542109, 0.09412597310686482, 0.10898796886058032, 0.13305024769992924, 0.17834394904458598, 0.23142250530785563, 0.470276008492569, 0.42745930644019814, 0.7951167728237792, 0.9076433121019108, 0.9412597310686482, 0.859518754423213, 0.7254069355980184, 0.3605803255484784, 0.3627034677990092, 0.37791932059447986, 0.4048124557678698, 0.42498230714791224, 0.43736730360934184, 0.4447983014861996, 0.4826610049539986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nudix_N.gap.json b/pfam_gap_rates/Nudix_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a27032738269f0fb75b36caa03bfaa6ca4fb8053
--- /dev/null
+++ b/pfam_gap_rates/Nudix_N.gap.json
@@ -0,0 +1 @@
+{"family": "Nudix_N", "n_seqs": 235, "length": 56, "gap_rates": [0.7702127659574468, 0.30638297872340425, 0.17446808510638298, 0.11914893617021277, 0.07234042553191489, 0.06808510638297872, 0.04680851063829787, 0.03829787234042553, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.01702127659574468, 0.01702127659574468, 0.01276595744680851, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00851063829787234, 0.00851063829787234, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00851063829787234, 0.00851063829787234, 0.01276595744680851, 0.01702127659574468, 0.02127659574468085, 0.02553191489361702, 0.02553191489361702, 0.04680851063829787, 0.05106382978723404, 0.06808510638297872, 0.06808510638297872, 0.07234042553191489, 0.0851063829787234, 0.09787234042553192, 0.10638297872340426, 0.11063829787234042, 0.12340425531914893, 0.1702127659574468, 0.2, 0.33617021276595743], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nup54.gap.json b/pfam_gap_rates/Nup54.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d549f3557f06e50ab9c2cf029dd4ae01fddafb06
--- /dev/null
+++ b/pfam_gap_rates/Nup54.gap.json
@@ -0,0 +1 @@
+{"family": "Nup54", "n_seqs": 308, "length": 149, "gap_rates": [0.5551948051948052, 0.39285714285714285, 0.2597402597402597, 0.19155844155844157, 0.1461038961038961, 0.12337662337662338, 0.10064935064935066, 0.08766233766233766, 0.08441558441558442, 0.08116883116883117, 0.08116883116883117, 0.07792207792207792, 0.07467532467532467, 0.07467532467532467, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.07142857142857142, 0.07142857142857142, 0.06818181818181818, 0.06818181818181818, 0.08116883116883117, 0.08116883116883117, 0.31493506493506496, 0.05844155844155844, 0.05519480519480519, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.048701298701298704, 0.045454545454545456, 0.04220779220779221, 0.04220779220779221, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.032467532467532464, 0.02922077922077922, 0.02922077922077922, 0.02922077922077922, 0.025974025974025976, 0.025974025974025976, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.025974025974025976, 0.03571428571428571, 0.03571428571428571, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.02922077922077922, 0.025974025974025976, 0.025974025974025976, 0.022727272727272728, 0.022727272727272728, 0.36688311688311687, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.03571428571428571, 0.03896103896103896, 0.04220779220779221, 0.04220779220779221, 0.02922077922077922, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.02922077922077922, 0.02922077922077922, 0.032467532467532464, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.04220779220779221, 0.03896103896103896, 0.03896103896103896, 0.03571428571428571, 0.04220779220779221, 0.04220779220779221, 0.05519480519480519, 0.048701298701298704, 0.04220779220779221, 0.04220779220779221, 0.045454545454545456, 0.8246753246753247, 0.8051948051948052, 0.04220779220779221, 0.04220779220779221, 0.04220779220779221, 0.048701298701298704, 0.048701298701298704, 0.05194805194805195, 0.05844155844155844, 0.05194805194805195, 0.08441558441558442, 0.048701298701298704, 0.048701298701298704, 0.048701298701298704, 0.05194805194805195, 0.05519480519480519, 0.05519480519480519, 0.05519480519480519, 0.05519480519480519, 0.05519480519480519, 0.05519480519480519, 0.05519480519480519, 0.05519480519480519, 0.05519480519480519, 0.05519480519480519, 0.05519480519480519, 0.05844155844155844, 0.05844155844155844, 0.13636363636363635, 0.11688311688311688, 0.948051948051948, 0.8506493506493507, 0.11363636363636363, 0.09415584415584416, 0.3409090909090909, 0.09415584415584416, 0.10064935064935066, 0.09740259740259741, 0.11363636363636363, 0.12012987012987013, 0.12337662337662338, 0.1331168831168831, 0.18181818181818182, 0.29545454545454547, 0.44155844155844154, 0.6785714285714286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nup88.gap.json b/pfam_gap_rates/Nup88.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10db5dfa69017155058544bda9503e510cf00d9a
--- /dev/null
+++ b/pfam_gap_rates/Nup88.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nup96.gap.json b/pfam_gap_rates/Nup96.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0672ec0aa0b72e81517ef552edc2083f1afd3c1e
--- /dev/null
+++ b/pfam_gap_rates/Nup96.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NurA.gap.json b/pfam_gap_rates/NurA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c6bead54da9f29a4d523430687bcec97d03eeae
--- /dev/null
+++ b/pfam_gap_rates/NurA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NusG_II.gap.json b/pfam_gap_rates/NusG_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2ade259c170f3743c6f842dd01361ac86741c1d
--- /dev/null
+++ b/pfam_gap_rates/NusG_II.gap.json
@@ -0,0 +1 @@
+{"family": "NusG_II", "n_seqs": 455, "length": 115, "gap_rates": [0.6879120879120879, 0.389010989010989, 0.2879120879120879, 0.2021978021978022, 0.12527472527472527, 0.08571428571428572, 0.07472527472527472, 0.07472527472527472, 0.07912087912087912, 0.10329670329670329, 0.11868131868131868, 0.08791208791208792, 0.5560439560439561, 0.7736263736263737, 0.8791208791208791, 0.9428571428571428, 0.9208791208791208, 0.8395604395604396, 0.6681318681318681, 0.4197802197802198, 0.13626373626373625, 0.06153846153846154, 0.05054945054945055, 0.046153846153846156, 0.041758241758241756, 0.03956043956043956, 0.03736263736263736, 0.03736263736263736, 0.03736263736263736, 0.02857142857142857, 0.01978021978021978, 0.01978021978021978, 0.017582417582417582, 0.017582417582417582, 0.017582417582417582, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.013186813186813187, 0.017582417582417582, 0.013186813186813187, 0.046153846153846156, 0.015384615384615385, 0.01978021978021978, 0.01098901098901099, 0.01098901098901099, 0.015384615384615385, 0.013186813186813187, 0.5978021978021978, 0.31648351648351647, 0.3142857142857143, 0.07692307692307693, 0.08791208791208792, 0.04835164835164835, 0.017582417582417582, 0.017582417582417582, 0.02197802197802198, 0.02857142857142857, 0.22637362637362637, 0.17362637362637362, 0.1076923076923077, 0.10989010989010989, 0.08791208791208792, 0.02857142857142857, 0.8043956043956044, 0.015384615384615385, 0.015384615384615385, 0.008791208791208791, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.008791208791208791, 0.008791208791208791, 0.006593406593406593, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.004395604395604396, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.004395604395604396, 0.002197802197802198, 0.004395604395604396, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.004395604395604396, 0.015384615384615385, 0.015384615384615385, 0.017582417582417582, 0.015384615384615385, 0.004395604395604396, 0.002197802197802198, 0.004395604395604396, 0.004395604395604396, 0.004395604395604396, 0.004395604395604396, 0.004395604395604396, 0.004395604395604396, 0.004395604395604396, 0.008791208791208791, 0.013186813186813187, 0.02197802197802198, 0.03736263736263736, 0.06373626373626373, 0.13186813186813187, 0.3978021978021978], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OATP.gap.json b/pfam_gap_rates/OATP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4b7be193bf596542a9196702f892b122c74ef565
--- /dev/null
+++ b/pfam_gap_rates/OATP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OMP_b-brl.gap.json b/pfam_gap_rates/OMP_b-brl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55067a2f5688db7fbd2136d5c4f82ae67ac5a861
--- /dev/null
+++ b/pfam_gap_rates/OMP_b-brl.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ORC2.gap.json b/pfam_gap_rates/ORC2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7aaff798d5d731c078df377facbc749985ca97cc
--- /dev/null
+++ b/pfam_gap_rates/ORC2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OS-D.gap.json b/pfam_gap_rates/OS-D.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f598a9247477cdd5b991bb0372c7b81e5610bf00
--- /dev/null
+++ b/pfam_gap_rates/OS-D.gap.json
@@ -0,0 +1 @@
+{"family": "OS-D", "n_seqs": 284, "length": 94, "gap_rates": [0.29577464788732394, 0.29577464788732394, 0.2711267605633803, 0.25704225352112675, 0.23591549295774647, 0.19014084507042253, 0.19014084507042253, 0.16549295774647887, 0.14084507042253522, 0.10915492957746478, 0.10211267605633803, 0.09507042253521127, 0.08098591549295775, 0.07746478873239436, 0.07746478873239436, 0.07746478873239436, 0.07746478873239436, 0.07394366197183098, 0.07394366197183098, 0.07042253521126761, 0.07042253521126761, 0.07394366197183098, 0.07394366197183098, 0.07042253521126761, 0.07394366197183098, 0.07042253521126761, 0.07042253521126761, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.05985915492957746, 0.05985915492957746, 0.05985915492957746, 0.06338028169014084, 0.05985915492957746, 0.9225352112676056, 0.05985915492957746, 0.056338028169014086, 0.04929577464788732, 0.04225352112676056, 0.04929577464788732, 0.07394366197183098, 0.056338028169014086, 0.045774647887323945, 0.0528169014084507, 0.0528169014084507, 0.05985915492957746, 0.05985915492957746, 0.056338028169014086, 0.0528169014084507, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.0528169014084507, 0.0528169014084507, 0.0528169014084507, 0.0528169014084507, 0.0528169014084507, 0.0528169014084507, 0.0528169014084507, 0.056338028169014086, 0.056338028169014086, 0.05985915492957746, 0.05985915492957746, 0.05985915492957746, 0.06338028169014084, 0.06338028169014084, 0.07394366197183098, 0.08098591549295775, 0.13380281690140844, 0.16901408450704225, 0.17253521126760563, 0.19718309859154928, 0.2147887323943662, 0.2535211267605634, 0.3591549295774648, 0.9049295774647887], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OST3_OST6.gap.json b/pfam_gap_rates/OST3_OST6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..064cf4e33c507defe6e77abc2f50cb3d995d149f
--- /dev/null
+++ b/pfam_gap_rates/OST3_OST6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Opi1.gap.json b/pfam_gap_rates/Opi1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c2772749fa66a25275e6caa887b178db4c0c763
--- /dev/null
+++ b/pfam_gap_rates/Opi1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OrfB_IS605.gap.json b/pfam_gap_rates/OrfB_IS605.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ed1ed1b34933c0f67e0df96c18ec11c5a0fbb49
--- /dev/null
+++ b/pfam_gap_rates/OrfB_IS605.gap.json
@@ -0,0 +1 @@
+{"family": "OrfB_IS605", "n_seqs": 2689, "length": 133, "gap_rates": [0.9222759390107846, 0.7534399404983265, 0.6742283376719971, 0.5972480476013388, 0.546671625139457, 0.5254741539605802, 0.46299739680178503, 0.4470063220528077, 0.4960952026775753, 0.8876905912978803, 0.20937151357381925, 0.1781331349944217, 0.1506136110078096, 0.1216065451840833, 0.09334325027891409, 0.07735217552993678, 0.06433618445518781, 0.05392339159538862, 0.044998140572703606, 0.04165117143919673, 0.03718854592785422, 0.03495723317218297, 0.034213462253625884, 0.03198214949795463, 0.030866493120119003, 0.030494607660840462, 0.030494607660840462, 0.029378951283004835, 0.030494607660840462, 0.030866493120119003, 0.029378951283004835, 0.02900706582372629, 0.027891409445890667, 0.027519523986612122, 0.027519523986612122, 0.027519523986612122, 0.7010040907400521, 0.6664187430271477, 0.6388992190405355, 0.9494235775381182, 0.8973596132391224, 0.1074748977314987, 0.028263294905169208, 0.027891409445890667, 0.026031982149497954, 0.02677575306805504, 0.051320193380438826, 0.026031982149497954, 0.02342878393454816, 0.021569356638155446, 0.01896615842320565, 0.017850502045370024, 0.0167348456675344, 0.015991074748977315, 0.014503532911863145, 0.014131647452584604, 0.012644105615470434, 0.01338787653402752, 0.013759761993306061, 0.012644105615470434, 0.01338787653402752, 0.013759761993306061, 0.014131647452584604, 0.015991074748977315, 0.0167348456675344, 0.015991074748977315, 0.03867608776496839, 0.04165117143919673, 0.03718854592785422, 0.039419858683525474, 0.1312755671253254, 0.18891781331349944, 0.809966530308665, 0.8371141688359985, 0.8679806619561176, 0.8817404239494235, 0.9107474897731499, 0.8947564150241726, 0.8739308293045742, 0.8519895872071402, 0.8319077724060989, 0.7954629973968018, 0.2026775753068055, 0.11602826329490516, 0.09854964670881368, 0.03198214949795463, 0.020825585719598364, 0.020825585719598364, 0.02008181480104128, 0.016362960208255856, 0.017106731126812942, 0.017478616586091483, 0.017106731126812942, 0.017478616586091483, 0.0167348456675344, 0.0167348456675344, 0.01822238750464857, 0.01896615842320565, 0.019338043882484196, 0.019709929341762737, 0.0238006693938267, 0.028263294905169208, 0.029378951283004835, 0.030866493120119003, 0.031238378579397545, 0.03384157679434734, 0.034585347712904425, 0.03532911863146151, 0.03756043138713276, 0.03756043138713276, 0.03830420230568985, 0.0405355150613611, 0.04313871327631089, 0.044626255113425065, 0.05317962067683154, 0.05689847526961696, 0.06247675715879509, 0.06991446634436593, 0.08776496838973596, 0.9308293045741911, 0.1242097433990331, 0.12792859799181852, 0.13239122350316102, 0.1338787653402752, 0.14838229825213833, 0.15544812197843064, 0.1710673112681294, 0.18185198958720714, 0.20676831535886947, 0.22610635924135367, 0.2629230197099293, 0.8285608032725921, 0.9401264410561547], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxidored_molyb.gap.json b/pfam_gap_rates/Oxidored_molyb.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af615ecb9d1cc9d12eacd7861b0a613a37e51e41
--- /dev/null
+++ b/pfam_gap_rates/Oxidored_molyb.gap.json
@@ -0,0 +1 @@
+{"family": "Oxidored_molyb", "n_seqs": 2278, "length": 199, "gap_rates": [0.7366110623353819, 0.6417910447761194, 0.5500438981562774, 0.4828797190517998, 0.4306409130816506, 0.9473222124670764, 0.3924495171202809, 0.3305531167690957, 0.24231782265144863, 0.17295873573309922, 0.12423178226514486, 0.10755048287971905, 0.1057945566286216, 0.10052677787532924, 0.09394205443371378, 0.09262510974539069, 0.09218612818261633, 0.09218612818261633, 0.09262510974539069, 0.14223002633889376, 0.11018437225636524, 0.0961369622475856, 0.09789288849868305, 0.08955223880597014, 0.08955223880597014, 0.08472344161545214, 0.08296751536435469, 0.08296751536435469, 0.08165057067603161, 0.08165057067603161, 0.08165057067603161, 0.08165057067603161, 0.08033362598770852, 0.08077260755048288, 0.636523266022827, 0.08252853380158033, 0.07989464442493416, 0.07857769973661106, 0.08033362598770852, 0.07901668129938542, 0.07945566286215978, 0.07857769973661106, 0.0781387181738367, 0.07857769973661106, 0.07901668129938542, 0.07989464442493416, 0.08208955223880597, 0.08077260755048288, 0.08121158911325724, 0.5320456540825286, 0.6330114135206322, 0.6352063213345039, 0.6395961369622476, 0.6382791922739245, 0.6369622475856014, 0.6369622475856014, 0.9165935030728709, 0.6395961369622476, 0.7107111501316945, 0.92756804214223, 0.8204565408252853, 0.6387181738366988, 0.6264266900790166, 0.62071992976295, 0.6128182616330115, 0.6079894644424935, 0.07550482879719052, 0.06409130816505706, 0.5408252853380158, 0.5355575065847235, 0.5263388937664618, 0.32748024582967517, 0.046093064091308165, 0.03511852502194908, 0.02897278314310799, 0.02370500438981563, 0.020632133450395083, 0.021071115013169446, 0.01887620719929763, 0.018437225636523266, 0.017998244073748903, 0.017998244073748903, 0.017998244073748903, 0.017998244073748903, 0.01755926251097454, 0.017120280948200176, 0.01755926251097454, 0.017998244073748903, 0.01755926251097454, 0.01755926251097454, 0.017120280948200176, 0.01755926251097454, 0.050921861281826165, 0.8564530289727832, 0.913081650570676, 0.9460052677787533, 0.9350307287093942, 0.8990342405618964, 0.839332748024583, 0.7550482879719052, 0.09657594381035997, 0.0781387181738367, 0.025899912203687446, 0.015803336259877086, 0.01624231782265145, 0.01624231782265145, 0.015364354697102721, 0.015364354697102721, 0.015364354697102721, 0.015364354697102721, 0.022388059701492536, 0.9117647058823529, 0.025460930640913083, 0.35908691834942935, 0.5346795434591747, 0.5149253731343284, 0.6532045654082529, 0.7594381035996488, 0.8165057067603161, 0.8301141352063214, 0.9376646180860404, 0.8740122914837577, 0.8230904302019315, 0.7928007023705005, 0.7129060579455663, 0.6242317822651449, 0.5381913959613697, 0.46927129060579453, 0.3788410886742757, 0.04170324846356453, 0.018437225636523266, 0.01755926251097454, 0.015803336259877086, 0.015364354697102721, 0.015803336259877086, 0.014925373134328358, 0.015803336259877086, 0.015803336259877086, 0.017998244073748903, 0.016681299385425813, 0.015803336259877086, 0.863476733977173, 0.8555750658472344, 0.11676909569798069, 0.03424056189640035, 0.9148375768217735, 0.8573309920983319, 0.015364354697102721, 0.014486391571553995, 0.014486391571553995, 0.014486391571553995, 0.014486391571553995, 0.014486391571553995, 0.014047410008779631, 0.011852502194907815, 0.013169446883230905, 0.013169446883230905, 0.013169446883230905, 0.013608428446005268, 0.014925373134328358, 0.014486391571553995, 0.014486391571553995, 0.014486391571553995, 0.015803336259877086, 0.018437225636523266, 0.021071115013169446, 0.019315188762071993, 0.018437225636523266, 0.01887620719929763, 0.01887620719929763, 0.02019315188762072, 0.021949078138718173, 0.024582967515364356, 0.04521510096575944, 0.05794556628621598, 0.06233538191395961, 0.06277436347673397, 0.0636523266022827, 0.06453028972783142, 0.0649692712906058, 0.06540825285338016, 0.9319578577699736, 0.06584723441615452, 0.06584723441615452, 0.06672519754170325, 0.06716417910447761, 0.06804214223002635, 0.06804214223002635, 0.07023705004389816, 0.07462686567164178, 0.09525899912203688, 0.12159789288849868, 0.14398595258999122, 0.17251975417032483, 0.2392449517120281, 0.2787532923617208, 0.3208955223880597, 0.3801580333625988, 0.4631255487269535], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxidored_nitro.gap.json b/pfam_gap_rates/Oxidored_nitro.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccdf6c5d1f61afc882c462be413e09f8823ce7b0
--- /dev/null
+++ b/pfam_gap_rates/Oxidored_nitro.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PAAR_motif.gap.json b/pfam_gap_rates/PAAR_motif.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acbeb44d5f593ad47286e046db62ce27661f1881
--- /dev/null
+++ b/pfam_gap_rates/PAAR_motif.gap.json
@@ -0,0 +1 @@
+{"family": "PAAR_motif", "n_seqs": 458, "length": 85, "gap_rates": [0.834061135371179, 0.4978165938864629, 0.44759825327510916, 0.4039301310043668, 0.28820960698689957, 0.2685589519650655, 0.23580786026200873, 0.18995633187772926, 0.15502183406113537, 0.13537117903930132, 0.12882096069868995, 0.12445414847161572, 0.7096069868995634, 0.11353711790393013, 0.11353711790393013, 0.11353711790393013, 0.10480349344978165, 0.10043668122270742, 0.09388646288209607, 0.09170305676855896, 0.09170305676855896, 0.07860262008733625, 0.07641921397379912, 0.0611353711790393, 0.048034934497816595, 0.03056768558951965, 0.03056768558951965, 0.03056768558951965, 0.024017467248908297, 0.021834061135371178, 0.017467248908296942, 0.017467248908296942, 0.013100436681222707, 0.013100436681222707, 0.8602620087336245, 0.06331877729257641, 0.034934497816593885, 0.5807860262008734, 0.8537117903930131, 0.9082969432314411, 0.9388646288209607, 0.925764192139738, 0.8842794759825328, 0.8034934497816594, 0.4781659388646288, 0.048034934497816595, 0.1812227074235808, 0.2096069868995633, 0.517467248908297, 0.9061135371179039, 0.7925764192139738, 0.3406113537117904, 0.2554585152838428, 0.14192139737991266, 0.024017467248908297, 0.9475982532751092, 0.024017467248908297, 0.028384279475982533, 0.019650655021834062, 0.021834061135371178, 0.024017467248908297, 0.019650655021834062, 0.024017467248908297, 0.034934497816593885, 0.03275109170305677, 0.034934497816593885, 0.05240174672489083, 0.08296943231441048, 0.09170305676855896, 0.0851528384279476, 0.0851528384279476, 0.08733624454148471, 0.08733624454148471, 0.08951965065502183, 0.09170305676855896, 0.09388646288209607, 0.1091703056768559, 0.13537117903930132, 0.1462882096069869, 0.1572052401746725, 0.16375545851528384, 0.19868995633187772, 0.2685589519650655, 0.4148471615720524, 0.9126637554585153], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PADR1.gap.json b/pfam_gap_rates/PADR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5efd9ddfed39fd48de5a42a9ca635aee88cc194d
--- /dev/null
+++ b/pfam_gap_rates/PADR1.gap.json
@@ -0,0 +1 @@
+{"family": "PADR1", "n_seqs": 192, "length": 57, "gap_rates": [0.5104166666666666, 0.22395833333333334, 0.109375, 0.057291666666666664, 0.046875, 0.036458333333333336, 0.036458333333333336, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.5416666666666666, 0.010416666666666666, 0.020833333333333332, 0.010416666666666666, 0.010416666666666666, 0.005208333333333333, 0.005208333333333333, 0.010416666666666666, 0.010416666666666666, 0.78125, 0.6822916666666666, 0.005208333333333333, 0.005208333333333333, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.020833333333333332, 0.9114583333333334, 0.890625, 0.015625, 0.041666666666666664, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.03125, 0.046875, 0.08333333333333333, 0.08854166666666667, 0.11458333333333333, 0.13541666666666666, 0.140625, 0.16666666666666666, 0.6458333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAN_3.gap.json b/pfam_gap_rates/PAN_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d3c22908d66d3e73a4c31cb3989d9e9dd9ffb33
--- /dev/null
+++ b/pfam_gap_rates/PAN_3.gap.json
@@ -0,0 +1 @@
+{"family": "PAN_3", "n_seqs": 118, "length": 79, "gap_rates": [0.3644067796610169, 0.3305084745762712, 0.288135593220339, 0.2542372881355932, 0.2457627118644068, 0.23728813559322035, 0.2288135593220339, 0.22033898305084745, 0.211864406779661, 0.2033898305084746, 0.23728813559322035, 0.8728813559322034, 0.8050847457627118, 0.423728813559322, 0.2457627118644068, 0.1864406779661017, 0.0847457627118644, 0.07627118644067797, 0.06779661016949153, 0.0423728813559322, 0.0423728813559322, 0.03389830508474576, 0.03389830508474576, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.03389830508474576, 0.05084745762711865, 0.05084745762711865, 0.0423728813559322, 0.1016949152542373, 0.7457627118644068, 0.5254237288135594, 0.0847457627118644, 0.05084745762711865, 0.059322033898305086, 0.059322033898305086, 0.059322033898305086, 0.059322033898305086, 0.06779661016949153, 0.07627118644067797, 0.11864406779661017, 0.1440677966101695, 0.17796610169491525, 0.8813559322033898, 0.1694915254237288, 0.2288135593220339, 0.211864406779661, 0.2542372881355932, 0.2627118644067797, 0.3050847457627119, 0.9491525423728814, 0.9491525423728814, 0.9152542372881356, 0.3050847457627119, 0.2796610169491525, 0.2796610169491525, 0.2796610169491525, 0.2966101694915254, 0.288135593220339, 0.2966101694915254, 0.3220338983050847, 0.3559322033898305, 0.3389830508474576, 0.3559322033898305, 0.3898305084745763, 0.559322033898305], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAP2.gap.json b/pfam_gap_rates/PAP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5681ca715cdfcfccf2aab4c64e72d44aa9600744
--- /dev/null
+++ b/pfam_gap_rates/PAP2.gap.json
@@ -0,0 +1 @@
+{"family": "PAP2", "n_seqs": 5000, "length": 164, "gap_rates": [0.8608, 0.6844, 0.54, 0.4196, 0.3468, 0.2924, 0.259, 0.2358, 0.2178, 0.21, 0.1936, 0.1848, 0.1788, 0.177, 0.9482, 0.1804, 0.1712, 0.1662, 0.1538, 0.1458, 0.1436, 0.142, 0.1398, 0.1376, 0.1352, 0.1378, 0.1328, 0.1314, 0.1348, 0.143, 0.1494, 0.1486, 0.1482, 0.1478, 0.1484, 0.146, 0.1464, 0.1492, 0.1576, 0.2042, 0.348, 0.3306, 0.3876, 0.4874, 0.5504, 0.6374, 0.73, 0.7534, 0.6758, 0.7288, 0.767, 0.8014, 0.8202, 0.8378, 0.8706, 0.902, 0.9206, 0.9474, 0.9344, 0.9076, 0.8878, 0.8534, 0.8286, 0.8138, 0.7832, 0.7478, 0.7122, 0.595, 0.5404, 0.3972, 0.1856, 0.027, 0.0184, 0.0128, 0.0126, 0.0122, 0.0132, 0.0128, 0.012, 0.0134, 0.0124, 0.0122, 0.0122, 0.0126, 0.013, 0.0124, 0.0134, 0.0146, 0.0138, 0.015, 0.0156, 0.0146, 0.0126, 0.0132, 0.014, 0.0138, 0.0164, 0.0214, 0.529, 0.5536, 0.7064, 0.7836, 0.8584, 0.9148, 0.9366, 0.9478, 0.9432, 0.9286, 0.887, 0.8014, 0.7404, 0.6826, 0.4988, 0.4714, 0.4506, 0.4086, 0.369, 0.3464, 0.2478, 0.1912, 0.0216, 0.018, 0.0112, 0.0108, 0.0096, 0.0086, 0.0078, 0.0082, 0.0082, 0.0082, 0.008, 0.0084, 0.0092, 0.0094, 0.0092, 0.0098, 0.0098, 0.0102, 0.0104, 0.011, 0.0122, 0.0132, 0.014, 0.0146, 0.0154, 0.016, 0.0194, 0.0208, 0.024, 0.0238, 0.0292, 0.0326, 0.0382, 0.047, 0.065, 0.0872, 0.119, 0.1832, 0.2584, 0.3528, 0.4794, 0.6102, 0.769, 0.9232], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAX.gap.json b/pfam_gap_rates/PAX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5009b396078fb5d53def27071dfb92597c2a5446
--- /dev/null
+++ b/pfam_gap_rates/PAX.gap.json
@@ -0,0 +1 @@
+{"family": "PAX", "n_seqs": 671, "length": 126, "gap_rates": [0.5409836065573771, 0.3621460506706408, 0.27123695976154993, 0.2473919523099851, 0.21013412816691504, 0.19076005961251863, 0.18926974664679583, 0.18777943368107303, 0.18777943368107303, 0.18628912071535023, 0.18479880774962743, 0.18479880774962743, 0.18479880774962743, 0.18479880774962743, 0.17138599105812222, 0.15499254843517138, 0.15201192250372578, 0.15052160953800298, 0.14754098360655737, 0.14157973174366617, 0.13561847988077497, 0.13412816691505217, 0.11475409836065574, 0.11624441132637854, 0.11475409836065574, 0.11326378539493294, 0.11326378539493294, 0.11624441132637854, 0.09836065573770492, 0.09836065573770492, 0.09388971684053651, 0.09090909090909091, 0.08941877794336811, 0.09090909090909091, 0.08941877794336811, 0.08941877794336811, 0.08792846497764531, 0.08792846497764531, 0.08643815201192251, 0.08643815201192251, 0.08643815201192251, 0.08494783904619971, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08047690014903129, 0.08196721311475409, 0.08047690014903129, 0.08345752608047691, 0.08345752608047691, 0.08345752608047691, 0.08047690014903129, 0.07749627421758569, 0.07302533532041729, 0.07451564828614009, 0.07898658718330849, 0.08643815201192251, 0.09836065573770492, 0.10134128166915052, 0.09388971684053651, 0.09388971684053651, 0.09388971684053651, 0.08196721311475409, 0.08196721311475409, 0.08345752608047691, 0.08792846497764531, 0.09836065573770492, 0.12369597615499255, 0.12220566318926974, 0.12071535022354694, 0.10581222056631892, 0.10283159463487332, 0.10879284649776454, 0.9210134128166915, 0.12220566318926974, 0.13114754098360656, 0.13561847988077497, 0.13859910581222057, 0.14754098360655737, 0.13710879284649777, 0.13412816691505217, 0.13859910581222057, 0.14307004470938897, 0.14008941877794337, 0.14307004470938897, 0.14605067064083457, 0.14605067064083457, 0.14605067064083457, 0.15052160953800298, 0.15499254843517138, 0.15350223546944858, 0.15946348733233978, 0.16095380029806258, 0.15350223546944858, 0.15648286140089418, 0.15648286140089418, 0.15648286140089418, 0.15499254843517138, 0.15797317436661698, 0.15797317436661698, 0.15946348733233978, 0.16095380029806258, 0.16393442622950818, 0.16840536512667661, 0.17138599105812222, 0.18181818181818182, 0.19225037257824143, 0.20417287630402384, 0.20417287630402384, 0.20715350223546944, 0.23397913561847988, 0.23397913561847988, 0.22354694485842028, 0.21162444113263784, 0.21162444113263784, 0.21162444113263784, 0.21758569299552907, 0.22652757078986588, 0.23546944858420268, 0.2488822652757079, 0.2548435171385991, 0.2727272727272727, 0.3025335320417288, 0.31892697466467956, 0.33681073025335323], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PBP_like.gap.json b/pfam_gap_rates/PBP_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2883de3b27c804a6d865104a7ee3d1d15573d9a0
--- /dev/null
+++ b/pfam_gap_rates/PBP_like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PC4.gap.json b/pfam_gap_rates/PC4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48e3c5c336dd374f60a673c541cc970c994aa86f
--- /dev/null
+++ b/pfam_gap_rates/PC4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PCB_OB.gap.json b/pfam_gap_rates/PCB_OB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b3709ebf31970f4bafba90e28a34e794c88e15b
--- /dev/null
+++ b/pfam_gap_rates/PCB_OB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PCEMA1.gap.json b/pfam_gap_rates/PCEMA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..694492ee99484cc7cbb9d51529a0ac6fce05175b
--- /dev/null
+++ b/pfam_gap_rates/PCEMA1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PCMT.gap.json b/pfam_gap_rates/PCMT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f89404e7b64ffad08c4002e2112a49be87abf33
--- /dev/null
+++ b/pfam_gap_rates/PCMT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PCNA_C.gap.json b/pfam_gap_rates/PCNA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6cee16cb8eb258b4565a0859be3e904351d096d9
--- /dev/null
+++ b/pfam_gap_rates/PCNA_C.gap.json
@@ -0,0 +1 @@
+{"family": "PCNA_C", "n_seqs": 547, "length": 128, "gap_rates": [0.4515539305301645, 0.26691042047531993, 0.21937842778793418, 0.18647166361974407, 0.1663619744058501, 0.15356489945155394, 0.15356489945155394, 0.15173674588665448, 0.15173674588665448, 0.1480804387568556, 0.1480804387568556, 0.1480804387568556, 0.14625228519195613, 0.14442413162705667, 0.14442413162705667, 0.14442413162705667, 0.1425959780621572, 0.13893967093235832, 0.13893967093235832, 0.13528336380255943, 0.1316270566727605, 0.1316270566727605, 0.1316270566727605, 0.1316270566727605, 0.12979890310786105, 0.12797074954296161, 0.12797074954296161, 0.12797074954296161, 0.12797074954296161, 0.12797074954296161, 0.12431444241316271, 0.12979890310786105, 0.1316270566727605, 0.1316270566727605, 0.1316270566727605, 0.1316270566727605, 0.12797074954296161, 0.12979890310786105, 0.12979890310786105, 0.12979890310786105, 0.1316270566727605, 0.13345521023765997, 0.12979890310786105, 0.12979890310786105, 0.1316270566727605, 0.12979890310786105, 0.13528336380255943, 0.14076782449725778, 0.15173674588665448, 0.15722120658135283, 0.15539305301645337, 0.14990859232175502, 0.18647166361974407, 0.1846435100548446, 0.18281535648994515, 0.1736745886654479, 0.170018281535649, 0.16819012797074953, 0.16819012797074953, 0.19012797074954296, 0.20658135283363802, 0.20292504570383912, 0.1882998171846435, 0.170018281535649, 0.15722120658135283, 0.15173674588665448, 0.1480804387568556, 0.1425959780621572, 0.14442413162705667, 0.1316270566727605, 0.13893967093235832, 0.12797074954296161, 0.12797074954296161, 0.12431444241316271, 0.12431444241316271, 0.12431444241316271, 0.12797074954296161, 0.1206581352833638, 0.12248628884826325, 0.12431444241316271, 0.11882998171846434, 0.11882998171846434, 0.11882998171846434, 0.11882998171846434, 0.11882998171846434, 0.1170018281535649, 0.11517367458866545, 0.11517367458866545, 0.11517367458866545, 0.11517367458866545, 0.11517367458866545, 0.1170018281535649, 0.11882998171846434, 0.113345521023766, 0.1170018281535649, 0.11517367458866545, 0.11517367458866545, 0.113345521023766, 0.11151736745886655, 0.113345521023766, 0.11517367458866545, 0.1170018281535649, 0.1170018281535649, 0.1170018281535649, 0.1170018281535649, 0.1170018281535649, 0.1170018281535649, 0.1170018281535649, 0.1170018281535649, 0.12248628884826325, 0.12431444241316271, 0.12614259597806216, 0.12979890310786105, 0.1316270566727605, 0.12797074954296161, 0.12797074954296161, 0.14625228519195613, 0.1773308957952468, 0.1882998171846435, 0.1773308957952468, 0.17915904936014626, 0.17915904936014626, 0.17915904936014626, 0.1809872029250457, 0.1809872029250457, 0.18281535648994515, 0.20475319926873858, 0.39853747714808047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PDDEXK_4.gap.json b/pfam_gap_rates/PDDEXK_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39294c4e230d0bd7be8db01d15572b6d7510e0c6
--- /dev/null
+++ b/pfam_gap_rates/PDDEXK_4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PDGF.gap.json b/pfam_gap_rates/PDGF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..090eb4d2cc68aee4205b0b2abdf3a3906aa41e90
--- /dev/null
+++ b/pfam_gap_rates/PDGF.gap.json
@@ -0,0 +1 @@
+{"family": "PDGF", "n_seqs": 273, "length": 99, "gap_rates": [0.21978021978021978, 0.19047619047619047, 0.13186813186813187, 0.1282051282051282, 0.1282051282051282, 0.12454212454212454, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.11721611721611722, 0.1282051282051282, 0.1391941391941392, 0.1391941391941392, 0.12454212454212454, 0.10622710622710622, 0.0989010989010989, 0.07692307692307693, 0.06593406593406594, 0.040293040293040296, 0.01098901098901099, 0.007326007326007326, 0.0, 0.14652014652014653, 0.8424908424908425, 0.8315018315018315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7728937728937729, 0.7912087912087912, 0.7728937728937729, 0.0, 0.9413919413919414, 0.9413919413919414, 0.9413919413919414, 0.0, 0.0, 0.0, 0.945054945054945, 0.0, 0.9084249084249084, 0.8717948717948718, 0.014652014652014652, 0.007326007326007326, 0.007326007326007326, 0.003663003663003663, 0.003663003663003663, 0.0, 0.0, 0.0, 0.0, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.007326007326007326, 0.014652014652014652, 0.02197802197802198, 0.029304029304029304, 0.029304029304029304, 0.04395604395604396, 0.054945054945054944, 0.7216117216117216, 0.8754578754578755, 0.9267399267399268, 0.8937728937728938, 0.8534798534798534, 0.6959706959706959, 0.4468864468864469, 0.32967032967032966, 0.29304029304029305, 0.16117216117216118, 0.07692307692307693, 0.07326007326007326, 0.0695970695970696, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08058608058608059, 0.08058608058608059, 0.08058608058608059, 0.08058608058608059, 0.08058608058608059, 0.08058608058608059, 0.08058608058608059, 0.08791208791208792, 0.08791208791208792, 0.09157509157509157, 0.0989010989010989], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PE.gap.json b/pfam_gap_rates/PE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8168130e015ac187ab0b9ebd96f8e0292cec86ef
--- /dev/null
+++ b/pfam_gap_rates/PE.gap.json
@@ -0,0 +1 @@
+{"family": "PE", "n_seqs": 499, "length": 93, "gap_rates": [0.4148296593186373, 0.37675350701402804, 0.3527054108216433, 0.23246492985971945, 0.21042084168336672, 0.18637274549098196, 0.18236472945891782, 0.17835671342685372, 0.17635270541082165, 0.14829659318637275, 0.13627254509018036, 0.13226452905811623, 0.13026052104208416, 0.13026052104208416, 0.1282565130260521, 0.12424849699398798, 0.12424849699398798, 0.12424849699398798, 0.10821643286573146, 0.10220440881763528, 0.10220440881763528, 0.10020040080160321, 0.10220440881763528, 0.10220440881763528, 0.09619238476953908, 0.08617234468937876, 0.0841683366733467, 0.08216432865731463, 0.08216432865731463, 0.08216432865731463, 0.0781563126252505, 0.08016032064128256, 0.08016032064128256, 0.08216432865731463, 0.09619238476953908, 0.0841683366733467, 0.07615230460921844, 0.15430861723446893, 0.0781563126252505, 0.04809619238476954, 0.04609218436873747, 0.04809619238476954, 0.04208416833667335, 0.04208416833667335, 0.04408817635270541, 0.04408817635270541, 0.04408817635270541, 0.03406813627254509, 0.03406813627254509, 0.03406813627254509, 0.036072144288577156, 0.036072144288577156, 0.036072144288577156, 0.03406813627254509, 0.03406813627254509, 0.03406813627254509, 0.03406813627254509, 0.03206412825651302, 0.036072144288577156, 0.04208416833667335, 0.04408817635270541, 0.04208416833667335, 0.04408817635270541, 0.04408817635270541, 0.04809619238476954, 0.050100200400801605, 0.056112224448897796, 0.056112224448897796, 0.05811623246492986, 0.05811623246492986, 0.06012024048096192, 0.06012024048096192, 0.06212424849699399, 0.06412825651302605, 0.06412825651302605, 0.06412825651302605, 0.06813627254509018, 0.07615230460921844, 0.07615230460921844, 0.0781563126252505, 0.08016032064128256, 0.08617234468937876, 0.09018036072144289, 0.09418837675350701, 0.09619238476953908, 0.10821643286573146, 0.11022044088176353, 0.11623246492985972, 0.11823647294589178, 0.12224448897795591, 0.12424849699398798, 0.17835671342685372, 0.4288577154308617], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PET117.gap.json b/pfam_gap_rates/PET117.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3cba42ddbc586516988720303dce8e7373851f57
--- /dev/null
+++ b/pfam_gap_rates/PET117.gap.json
@@ -0,0 +1 @@
+{"family": "PET117", "n_seqs": 165, "length": 80, "gap_rates": [0.4303030303030303, 0.15151515151515152, 0.12727272727272726, 0.09090909090909091, 0.05454545454545454, 0.048484848484848485, 0.048484848484848485, 0.04242424242424243, 0.03636363636363636, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.030303030303030304, 0.030303030303030304, 0.024242424242424242, 0.012121212121212121, 0.01818181818181818, 0.030303030303030304, 0.030303030303030304, 0.024242424242424242, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.03636363636363636, 0.03636363636363636, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.8909090909090909, 0.9333333333333333, 0.9393939393939394, 0.9454545454545454, 0.9454545454545454, 0.9454545454545454, 0.9454545454545454, 0.9333333333333333, 0.9151515151515152, 0.8848484848484849, 0.806060606060606, 0.7515151515151515, 0.7393939393939394, 0.48484848484848486, 0.10303030303030303, 0.09696969696969697, 0.10909090909090909, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.1393939393939394, 0.1393939393939394, 0.1393939393939394, 0.14545454545454545, 0.15151515151515152, 0.15757575757575756, 0.16363636363636364, 0.17575757575757575, 0.17575757575757575, 0.17575757575757575, 0.17575757575757575, 0.17575757575757575, 0.19393939393939394, 0.30303030303030304, 0.3575757575757576], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PG_binding_3.gap.json b/pfam_gap_rates/PG_binding_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33e54e57f1f26d2d215df1ea3f0ed325506b589c
--- /dev/null
+++ b/pfam_gap_rates/PG_binding_3.gap.json
@@ -0,0 +1 @@
+{"family": "PG_binding_3", "n_seqs": 205, "length": 93, "gap_rates": [0.624390243902439, 0.28292682926829266, 0.2, 0.14146341463414633, 0.08780487804878048, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06341463414634146, 0.7951219512195122, 0.8292682926829268, 0.8439024390243902, 0.8341463414634146, 0.8195121951219512, 0.7658536585365854, 0.07804878048780488, 0.4, 0.37073170731707317, 0.35121951219512193, 0.34146341463414637, 0.2975609756097561, 0.00975609756097561, 0.00975609756097561, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.4975609756097561, 0.8439024390243902, 0.8536585365853658, 0.8536585365853658, 0.7804878048780488, 0.47804878048780486, 0.4, 0.01951219512195122, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.0, 0.0, 0.0, 0.004878048780487805, 0.00975609756097561, 0.0, 0.0, 0.0, 0.0, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.00975609756097561, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.23902439024390243, 0.22439024390243903, 0.23902439024390243, 0.28780487804878047, 0.7560975609756098, 0.7609756097560976, 0.7658536585365854, 0.7658536585365854, 0.7658536585365854, 0.7609756097560976, 0.7463414634146341, 0.04878048780487805, 0.02926829268292683, 0.014634146341463415, 0.00975609756097561, 0.00975609756097561, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.01951219512195122, 0.0975609756097561, 0.6926829268292682], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHM7_ext.gap.json b/pfam_gap_rates/PHM7_ext.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e78a46974e747ac2adf6b27fe823f29c5d6b784
--- /dev/null
+++ b/pfam_gap_rates/PHM7_ext.gap.json
@@ -0,0 +1 @@
+{"family": "PHM7_ext", "n_seqs": 331, "length": 107, "gap_rates": [0.5377643504531722, 0.5105740181268882, 0.5045317220543807, 0.5015105740181269, 0.4984894259818731, 0.486404833836858, 0.513595166163142, 0.4652567975830816, 0.44410876132930516, 0.4380664652567976, 0.42900302114803623, 0.4199395770392749, 0.4108761329305136, 0.4078549848942598, 0.40181268882175225, 0.3957703927492447, 0.38368580060422963, 0.36555891238670696, 0.34441087613293053, 0.3202416918429003, 0.29003021148036257, 0.24471299093655588, 0.2326283987915408, 0.2084592145015106, 0.8187311178247734, 0.9033232628398792, 0.8761329305135952, 0.7220543806646526, 0.4743202416918429, 0.29607250755287007, 0.1540785498489426, 0.08459214501510574, 0.05740181268882175, 0.05740181268882175, 0.045317220543806644, 0.045317220543806644, 0.03625377643504532, 0.027190332326283987, 0.015105740181268883, 0.015105740181268883, 0.012084592145015106, 0.00906344410876133, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0, 0.0, 0.0030211480362537764, 0.0030211480362537764, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00906344410876133, 0.00906344410876133, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.015105740181268883, 0.879154078549849, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.8126888217522659, 0.01812688821752266, 0.0513595166163142, 0.824773413897281, 0.8549848942598187, 0.7824773413897281, 0.021148036253776436, 0.021148036253776436, 0.8821752265861027, 0.8700906344410876, 0.027190332326283987, 0.027190332326283987, 0.027190332326283987, 0.027190332326283987, 0.027190332326283987, 0.030211480362537766, 0.030211480362537766, 0.03625377643504532, 0.03625377643504532, 0.045317220543806644, 0.05740181268882175, 0.054380664652567974, 0.0755287009063444, 0.08459214501510574, 0.08761329305135952, 0.7311178247734139, 0.8217522658610272, 0.7099697885196374, 0.10574018126888217, 0.1933534743202417, 0.2598187311178248, 0.2688821752265861, 0.31722054380664655, 0.6586102719033232], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PH_3.gap.json b/pfam_gap_rates/PH_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62613e99883bb0246fd285c263649c04130da7c4
--- /dev/null
+++ b/pfam_gap_rates/PH_3.gap.json
@@ -0,0 +1 @@
+{"family": "PH_3", "n_seqs": 187, "length": 110, "gap_rates": [0.5454545454545454, 0.33689839572192515, 0.24598930481283424, 0.23529411764705882, 0.2192513368983957, 0.1925133689839572, 0.18181818181818182, 0.18181818181818182, 0.5935828877005348, 0.16042780748663102, 0.1497326203208556, 0.12834224598930483, 0.11764705882352941, 0.0748663101604278, 0.06417112299465241, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.0427807486631016, 0.0374331550802139, 0.026737967914438502, 0.026737967914438502, 0.03208556149732621, 0.026737967914438502, 0.9197860962566845, 0.8128342245989305, 0.0213903743315508, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.026737967914438502, 0.0, 0.0, 0.0, 0.0, 0.0053475935828877, 0.0106951871657754, 0.016042780748663103, 0.016042780748663103, 0.0106951871657754, 0.0053475935828877, 0.0, 0.0053475935828877, 0.0053475935828877, 0.016042780748663103, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8181818181818182, 0.8235294117647058, 0.8128342245989305, 0.016042780748663103, 0.016042780748663103, 0.0213903743315508, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.0481283422459893, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0374331550802139, 0.946524064171123, 0.0427807486631016, 0.0481283422459893, 0.0481283422459893, 0.0481283422459893, 0.053475935828877004, 0.053475935828877004, 0.053475935828877004, 0.058823529411764705, 0.893048128342246, 0.06951871657754011, 0.06417112299465241, 0.06951871657754011, 0.06417112299465241, 0.06417112299465241, 0.06951871657754011, 0.06951871657754011, 0.06951871657754011, 0.06951871657754011, 0.06951871657754011, 0.06951871657754011, 0.06951871657754011, 0.08021390374331551, 0.0855614973262032, 0.13368983957219252, 0.18716577540106952, 0.2620320855614973, 0.42780748663101603, 0.5454545454545454, 0.6898395721925134], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PI-PLC-C1.gap.json b/pfam_gap_rates/PI-PLC-C1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85b699df7e432fd3779a60920d7913e347ebb9e1
--- /dev/null
+++ b/pfam_gap_rates/PI-PLC-C1.gap.json
@@ -0,0 +1 @@
+{"family": "PI-PLC-C1", "n_seqs": 107, "length": 363, "gap_rates": [0.5233644859813084, 0.411214953271028, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.9439252336448598, 0.9439252336448598, 0.9345794392523364, 0.3364485981308411, 0.35514018691588783, 0.34579439252336447, 0.34579439252336447, 0.3644859813084112, 0.35514018691588783, 0.35514018691588783, 0.4766355140186916, 0.3925233644859813, 0.40186915887850466, 0.37383177570093457, 0.40186915887850466, 0.35514018691588783, 0.35514018691588783, 0.34579439252336447, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PI3K_rbd.gap.json b/pfam_gap_rates/PI3K_rbd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b21e1e3b94aca4fd03ae454a15ac45e1a50dc03
--- /dev/null
+++ b/pfam_gap_rates/PI3K_rbd.gap.json
@@ -0,0 +1 @@
+{"family": "PI3K_rbd", "n_seqs": 322, "length": 126, "gap_rates": [0.8291925465838509, 0.6956521739130435, 0.6490683229813664, 0.6055900621118012, 0.5714285714285714, 0.546583850931677, 0.531055900621118, 0.5186335403726708, 0.5062111801242236, 0.6459627329192547, 0.5962732919254659, 0.5031055900621118, 0.41304347826086957, 0.38819875776397517, 0.3447204968944099, 0.3105590062111801, 0.2888198757763975, 0.2826086956521739, 0.2732919254658385, 0.2670807453416149, 0.2608695652173913, 0.2577639751552795, 0.2577639751552795, 0.2329192546583851, 0.7546583850931677, 0.7919254658385093, 0.9161490683229814, 0.9472049689440993, 0.9347826086956522, 0.8913043478260869, 0.7608695652173914, 0.7236024844720497, 0.3167701863354037, 0.2608695652173913, 0.15527950310559005, 0.13664596273291926, 0.12111801242236025, 0.10559006211180125, 0.09316770186335403, 0.09316770186335403, 0.09006211180124224, 0.08385093167701864, 0.07763975155279502, 0.07142857142857142, 0.062111801242236024, 0.046583850931677016, 0.034161490683229816, 0.034161490683229816, 0.034161490683229816, 0.034161490683229816, 0.034161490683229816, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.7267080745341615, 0.9130434782608695, 0.8136645962732919, 0.515527950310559, 0.16149068322981366, 0.06832298136645963, 0.055900621118012424, 0.037267080745341616, 0.024844720496894408, 0.018633540372670808, 0.018633540372670808, 0.015527950310559006, 0.018633540372670808, 0.024844720496894408, 0.027950310559006212, 0.30124223602484473, 0.6273291925465838, 0.8291925465838509, 0.8695652173913043, 0.8881987577639752, 0.8695652173913043, 0.84472049689441, 0.7981366459627329, 0.5714285714285714, 0.015527950310559006, 0.003105590062111801, 0.009316770186335404, 0.0, 0.0, 0.0, 0.012422360248447204, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8819875776397516, 0.0, 0.0, 0.0, 0.003105590062111801, 0.0, 0.0, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.018633540372670808, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.040372670807453416, 0.049689440993788817, 0.052795031055900624, 0.062111801242236024, 0.06832298136645963, 0.07142857142857142, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.09006211180124224, 0.14906832298136646, 0.20186335403726707, 0.2826086956521739, 0.35714285714285715, 0.65527950310559], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PI3_PI4_kinase.gap.json b/pfam_gap_rates/PI3_PI4_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3493493e888f53431d35012d49c844de9c3dac9f
--- /dev/null
+++ b/pfam_gap_rates/PI3_PI4_kinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PIG-F.gap.json b/pfam_gap_rates/PIG-F.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25c2ca0cd9d859882bd0eba576e2df8597dd710a
--- /dev/null
+++ b/pfam_gap_rates/PIG-F.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PIG-S.gap.json b/pfam_gap_rates/PIG-S.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..871fa814535218317a416692517520c0ac2ea51c
--- /dev/null
+++ b/pfam_gap_rates/PIG-S.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PIH1.gap.json b/pfam_gap_rates/PIH1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9935eb7f6817c3f67ee83bd985667ed2135532a6
--- /dev/null
+++ b/pfam_gap_rates/PIH1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PIN_6.gap.json b/pfam_gap_rates/PIN_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd4ed536a59387aaf65de63f2b2e929d4831fd5b
--- /dev/null
+++ b/pfam_gap_rates/PIN_6.gap.json
@@ -0,0 +1 @@
+{"family": "PIN_6", "n_seqs": 409, "length": 96, "gap_rates": [0.2860635696821516, 0.08557457212713937, 0.07334963325183375, 0.07090464547677261, 0.07090464547677261, 0.07090464547677261, 0.07090464547677261, 0.07090464547677261, 0.06845965770171149, 0.06845965770171149, 0.06845965770171149, 0.8386308068459658, 0.8190709046454768, 0.6992665036674817, 0.6234718826405868, 0.16381418092909536, 0.13202933985330073, 0.1198044009779951, 0.1100244498777506, 0.08557457212713937, 0.061124694376528114, 0.039119804400977995, 0.034229828850855744, 0.03178484107579462, 0.03178484107579462, 0.029339853300733496, 0.03178484107579462, 0.03178484107579462, 0.03178484107579462, 0.029339853300733496, 0.029339853300733496, 0.02689486552567237, 0.02689486552567237, 0.02689486552567237, 0.02689486552567237, 0.02689486552567237, 0.02689486552567237, 0.029339853300733496, 0.029339853300733496, 0.039119804400977995, 0.03178484107579462, 0.03178484107579462, 0.03178484107579462, 0.029339853300733496, 0.029339853300733496, 0.03178484107579462, 0.05378973105134474, 0.061124694376528114, 0.8361858190709046, 0.9144254278728606, 0.8948655256723717, 0.8312958435207825, 0.034229828850855744, 0.80440097799511, 0.029339853300733496, 0.029339853300733496, 0.02444987775061125, 0.02444987775061125, 0.022004889975550123, 0.022004889975550123, 0.022004889975550123, 0.022004889975550123, 0.019559902200488997, 0.017114914425427872, 0.017114914425427872, 0.017114914425427872, 0.019559902200488997, 0.022004889975550123, 0.03178484107579462, 0.022004889975550123, 0.022004889975550123, 0.02689486552567237, 0.029339853300733496, 0.03178484107579462, 0.03178484107579462, 0.03178484107579462, 0.03178484107579462, 0.05378973105134474, 0.05134474327628362, 0.03178484107579462, 0.034229828850855744, 0.029339853300733496, 0.029339853300733496, 0.029339853300733496, 0.029339853300733496, 0.029339853300733496, 0.029339853300733496, 0.029339853300733496, 0.029339853300733496, 0.029339853300733496, 0.029339853300733496, 0.029339853300733496, 0.03178484107579462, 0.03178484107579462, 0.07579462102689487, 0.1980440097799511], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PITH.gap.json b/pfam_gap_rates/PITH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3eb1fb1f11461a5530073f7fbfac20d8e780ff9
--- /dev/null
+++ b/pfam_gap_rates/PITH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PK.gap.json b/pfam_gap_rates/PK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61a3d73a5b0011a3ee76e65da2e159eeb9310651
--- /dev/null
+++ b/pfam_gap_rates/PK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PKD_channel.gap.json b/pfam_gap_rates/PKD_channel.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8bf3c0ce986b1501f9f1011a3133ea9c8651f5e
--- /dev/null
+++ b/pfam_gap_rates/PKD_channel.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PLA1.gap.json b/pfam_gap_rates/PLA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6aa8c1217890757678a95d64d5203c869428bc3
--- /dev/null
+++ b/pfam_gap_rates/PLA1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PLD_C.gap.json b/pfam_gap_rates/PLD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27be2ef211f7202cd9d7ddff8001975995514d19
--- /dev/null
+++ b/pfam_gap_rates/PLD_C.gap.json
@@ -0,0 +1 @@
+{"family": "PLD_C", "n_seqs": 319, "length": 74, "gap_rates": [0.3605015673981191, 0.15047021943573669, 0.07523510971786834, 0.03761755485893417, 0.025078369905956112, 0.0219435736677116, 0.0219435736677116, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.0219435736677116, 0.03134796238244514, 0.9404388714733543, 0.0219435736677116, 0.018808777429467086, 0.6865203761755486, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.018808777429467086, 0.018808777429467086, 0.01567398119122257, 0.01567398119122257, 0.012539184952978056, 0.01567398119122257, 0.01567398119122257, 0.009404388714733543, 0.009404388714733543, 0.012539184952978056, 0.012539184952978056, 0.009404388714733543, 0.009404388714733543, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.009404388714733543, 0.012539184952978056, 0.050156739811912224, 0.05329153605015674, 0.01567398119122257, 0.01567398119122257, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.0219435736677116, 0.025078369905956112, 0.03134796238244514, 0.04075235109717868, 0.7523510971786834], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PNP_UDP_1.gap.json b/pfam_gap_rates/PNP_UDP_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f9baf0ce5d9a8502288b0371951c38b10ce6341
--- /dev/null
+++ b/pfam_gap_rates/PNP_UDP_1.gap.json
@@ -0,0 +1 @@
+{"family": "PNP_UDP_1", "n_seqs": 5000, "length": 345, "gap_rates": [0.7672, 0.358, 0.252, 0.2398, 0.236, 0.233, 0.232, 0.2286, 0.226, 0.8412, 0.9004, 0.8904, 0.6788, 0.224, 0.2288, 0.2238, 0.2222, 0.222, 0.2212, 0.2208, 0.2196, 0.219, 0.7258, 0.8376, 0.7886, 0.6924, 0.4856, 0.2516, 0.2102, 0.2078, 0.2028, 0.1994, 0.1976, 0.1968, 0.1988, 0.201, 0.766, 0.7936, 0.783, 0.7224, 0.4626, 0.3364, 0.192, 0.1848, 0.1672, 0.1608, 0.157, 0.1546, 0.1524, 0.148, 0.1418, 0.87, 0.2106, 0.1364, 0.1154, 0.1068, 0.095, 0.9466, 0.0902, 0.0798, 0.0882, 0.0672, 0.0638, 0.0568, 0.6108, 0.6572, 0.8684, 0.6194, 0.5948, 0.054, 0.0528, 0.0512, 0.0508, 0.0504, 0.0494, 0.0496, 0.9048, 0.5564, 0.099, 0.0468, 0.0458, 0.0446, 0.0426, 0.0424, 0.0424, 0.0432, 0.1102, 0.0672, 0.9352, 0.9462, 0.9498, 0.9384, 0.8996, 0.0928, 0.0372, 0.0348, 0.0338, 0.0336, 0.0334, 0.0332, 0.0332, 0.033, 0.0334, 0.0332, 0.0326, 0.033, 0.033, 0.9496, 0.9308, 0.083, 0.0618, 0.0346, 0.0334, 0.0378, 0.0346, 0.0326, 0.0324, 0.032, 0.0322, 0.0326, 0.0332, 0.0332, 0.0336, 0.054, 0.065, 0.0606, 0.9104, 0.922, 0.8722, 0.059, 0.053, 0.0494, 0.0504, 0.051, 0.0538, 0.1956, 0.2262, 0.242, 0.3388, 0.388, 0.4104, 0.4058, 0.668, 0.8496, 0.8708, 0.8828, 0.8954, 0.8992, 0.9018, 0.9096, 0.9216, 0.9284, 0.9322, 0.9328, 0.936, 0.9374, 0.9384, 0.9394, 0.94, 0.9418, 0.9442, 0.9454, 0.9474, 0.9488, 0.9498, 0.948, 0.9462, 0.9448, 0.9424, 0.9406, 0.9398, 0.939, 0.938, 0.937, 0.935, 0.9324, 0.9302, 0.927, 0.9204, 0.9036, 0.9002, 0.8978, 0.8904, 0.877, 0.8556, 0.8386, 0.6458, 0.4782, 0.1066, 0.0848, 0.0646, 0.0614, 0.059, 0.0566, 0.0574, 0.057, 0.0578, 0.4606, 0.0618, 0.0548, 0.0528, 0.049, 0.0474, 0.0476, 0.0484, 0.0472, 0.052, 0.0532, 0.054, 0.8978, 0.9288, 0.9488, 0.907, 0.883, 0.2078, 0.21, 0.2032, 0.1948, 0.147, 0.0838, 0.803, 0.8878, 0.9236, 0.9372, 0.9476, 0.9422, 0.9344, 0.9112, 0.863, 0.748, 0.063, 0.0566, 0.0456, 0.0432, 0.0414, 0.8352, 0.0444, 0.0422, 0.0378, 0.0344, 0.0338, 0.0326, 0.0326, 0.0328, 0.0332, 0.0326, 0.0326, 0.0322, 0.032, 0.8894, 0.9084, 0.912, 0.918, 0.932, 0.9414, 0.9228, 0.913, 0.9096, 0.9006, 0.8806, 0.0952, 0.073, 0.0704, 0.0678, 0.0448, 0.8876, 0.9124, 0.7916, 0.0506, 0.0436, 0.0398, 0.0394, 0.039, 0.0338, 0.9496, 0.884, 0.0634, 0.0468, 0.0292, 0.0288, 0.0286, 0.0274, 0.0276, 0.0276, 0.0282, 0.0292, 0.0306, 0.047, 0.0524, 0.0696, 0.0746, 0.0756, 0.0624, 0.0582, 0.0422, 0.0408, 0.0386, 0.0388, 0.0396, 0.04, 0.0402, 0.0432, 0.0448, 0.0466, 0.0752, 0.0748, 0.2706, 0.1764, 0.1882, 0.1976, 0.944, 0.928, 0.359, 0.3514, 0.3356, 0.334, 0.3034, 0.3204, 0.3858, 0.4294, 0.9166, 0.9088, 0.2522, 0.2492, 0.2528, 0.261, 0.2724, 0.289, 0.2986, 0.3104, 0.3244, 0.3364, 0.3478, 0.36, 0.3716, 0.3868, 0.4008, 0.4146, 0.4312, 0.448, 0.4738, 0.5016, 0.532, 0.5904, 0.934], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PNTB.gap.json b/pfam_gap_rates/PNTB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e781faeb2e0c74b9a6cbf0be2dc8c225526e7216
--- /dev/null
+++ b/pfam_gap_rates/PNTB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/POR_N.gap.json b/pfam_gap_rates/POR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99bef32a0a8d7db8528ed2e3114bdd8861e2c80c
--- /dev/null
+++ b/pfam_gap_rates/POR_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/POTRA_2.gap.json b/pfam_gap_rates/POTRA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55a925cd83c04e4bf09777ade299d7af7fb8b69f
--- /dev/null
+++ b/pfam_gap_rates/POTRA_2.gap.json
@@ -0,0 +1 @@
+{"family": "POTRA_2", "n_seqs": 691, "length": 78, "gap_rates": [0.6483357452966715, 0.42547033285094066, 0.2199710564399421, 0.1837916063675832, 0.16931982633863965, 0.16063675832127353, 0.15629522431259044, 0.15195369030390737, 0.15050651230101303, 0.14037626628075253, 0.9392185238784371, 0.1316931982633864, 0.11866859623733719, 0.10998552821997105, 0.09985528219971057, 0.09840810419681621, 0.1085383502170767, 0.09406657018813314, 0.0723589001447178, 0.060781476121562955, 0.053545586107091175, 0.05209840810419682, 0.04486251808972504, 0.05788712011577424, 0.02894356005788712, 0.024602026049204053, 0.02170767004341534, 0.01881331403762663, 0.017366136034732273, 0.015918958031837915, 0.01447178002894356, 0.020260492040520984, 0.013024602026049204, 0.013024602026049204, 0.011577424023154847, 0.011577424023154847, 0.011577424023154847, 0.010130246020260492, 0.008683068017366137, 0.008683068017366137, 0.00723589001447178, 0.00723589001447178, 0.005788712011577424, 0.004341534008683068, 0.001447178002894356, 0.001447178002894356, 0.001447178002894356, 0.001447178002894356, 0.001447178002894356, 0.001447178002894356, 0.002894356005788712, 0.001447178002894356, 0.004341534008683068, 0.005788712011577424, 0.01881331403762663, 0.011577424023154847, 0.002894356005788712, 0.001447178002894356, 0.001447178002894356, 0.002894356005788712, 0.9088277858176556, 0.002894356005788712, 0.005788712011577424, 0.008683068017366137, 0.06512301013024602, 0.06512301013024602, 0.017366136034732273, 0.017366136034732273, 0.017366136034732273, 0.01881331403762663, 0.01881331403762663, 0.01881331403762663, 0.01881331403762663, 0.02604920405209841, 0.02894356005788712, 0.04775687409551375, 0.09696092619392185, 0.20549927641099855], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PP28.gap.json b/pfam_gap_rates/PP28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bbd97fb58d3954367a865bb1d4e55419f156badb
--- /dev/null
+++ b/pfam_gap_rates/PP28.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PP2C.gap.json b/pfam_gap_rates/PP2C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fa62f695e9b606c673507b242c6d3031fdafbf5
--- /dev/null
+++ b/pfam_gap_rates/PP2C.gap.json
@@ -0,0 +1 @@
+{"family": "PP2C", "n_seqs": 5000, "length": 368, "gap_rates": [0.9126, 0.8266, 0.7858, 0.7662, 0.7368, 0.7212, 0.7076, 0.6926, 0.665, 0.6532, 0.6356, 0.6234, 0.6136, 0.5972, 0.593, 0.5844, 0.58, 0.5762, 0.5734, 0.5714, 0.565, 0.5598, 0.5978, 0.5854, 0.6818, 0.7662, 0.7576, 0.8838, 0.9224, 0.933, 0.9012, 0.8648, 0.6006, 0.5074, 0.4328, 0.4108, 0.3924, 0.3742, 0.3534, 0.3398, 0.3354, 0.333, 0.3302, 0.3292, 0.328, 0.327, 0.3246, 0.3234, 0.9324, 0.932, 0.3224, 0.3208, 0.3194, 0.3188, 0.317, 0.315, 0.3142, 0.3132, 0.3128, 0.3122, 0.3104, 0.3092, 0.3086, 0.9214, 0.9328, 0.9286, 0.8622, 0.33, 0.33, 0.3174, 0.3134, 0.3124, 0.3116, 0.31, 0.3076, 0.303, 0.3044, 0.3036, 0.3076, 0.5938, 0.7308, 0.7824, 0.8374, 0.868, 0.8976, 0.9164, 0.9358, 0.9454, 0.9406, 0.9274, 0.9042, 0.8884, 0.8542, 0.8104, 0.7622, 0.7018, 0.431, 0.2792, 0.262, 0.2498, 0.2388, 0.2352, 0.2338, 0.2314, 0.2296, 0.2284, 0.2268, 0.226, 0.848, 0.7918, 0.251, 0.2374, 0.2286, 0.2238, 0.223, 0.2248, 0.2306, 0.8218, 0.8868, 0.9232, 0.9478, 0.9348, 0.9122, 0.8574, 0.7922, 0.4454, 0.438, 0.436, 0.4156, 0.8362, 0.9192, 0.9468, 0.8838, 0.8102, 0.571, 0.6696, 0.3008, 0.213, 0.1896, 0.1802, 0.1746, 0.172, 0.1716, 0.1724, 0.1716, 0.1708, 0.1704, 0.1704, 0.1696, 0.1682, 0.1666, 0.1804, 0.1786, 0.1716, 0.8542, 0.9174, 0.9498, 0.9324, 0.9128, 0.8104, 0.1674, 0.1668, 0.1666, 0.1664, 0.1658, 0.1656, 0.1656, 0.1662, 0.166, 0.1656, 0.1656, 0.1658, 0.1644, 0.1642, 0.1644, 0.1666, 0.166, 0.1666, 0.166, 0.169, 0.698, 0.7534, 0.9108, 0.933, 0.9442, 0.9232, 0.8526, 0.7074, 0.6634, 0.5722, 0.166, 0.1632, 0.162, 0.1628, 0.1624, 0.1622, 0.1638, 0.1686, 0.1706, 0.1976, 0.2036, 0.1798, 0.1754, 0.1748, 0.179, 0.1794, 0.1758, 0.1768, 0.1792, 0.1796, 0.1856, 0.1884, 0.1886, 0.1886, 0.1902, 0.5016, 0.6684, 0.9062, 0.9454, 0.8304, 0.5544, 0.4434, 0.201, 0.196, 0.1942, 0.1952, 0.1968, 0.1962, 0.1792, 0.8098, 0.8146, 0.8194, 0.8348, 0.8804, 0.9032, 0.9138, 0.9336, 0.9476, 0.9498, 0.945, 0.925, 0.9112, 0.8856, 0.8414, 0.8286, 0.8156, 0.8126, 0.8038, 0.217, 0.1772, 0.1732, 0.1732, 0.1694, 0.168, 0.1676, 0.1672, 0.1662, 0.1674, 0.1686, 0.1686, 0.1686, 0.1788, 0.6084, 0.6302, 0.6216, 0.6644, 0.82, 0.8258, 0.8348, 0.8476, 0.8498, 0.8526, 0.9192, 0.924, 0.949, 0.9292, 0.9228, 0.8772, 0.8518, 0.848, 0.8466, 0.8286, 0.8232, 0.6818, 0.6602, 0.6064, 0.5846, 0.4174, 0.176, 0.1748, 0.1742, 0.1732, 0.1678, 0.1654, 0.1654, 0.165, 0.1668, 0.1672, 0.1694, 0.1694, 0.17, 0.1702, 0.1726, 0.178, 0.82, 0.1762, 0.1836, 0.1724, 0.1698, 0.1702, 0.172, 0.169, 0.1686, 0.1688, 0.169, 0.1714, 0.1768, 0.1796, 0.182, 0.1844, 0.186, 0.1896, 0.1914, 0.1938, 0.1962, 0.2, 0.2038, 0.2066, 0.2078, 0.2124, 0.2178, 0.2256, 0.2322, 0.2388, 0.408, 0.569, 0.5838, 0.852, 0.8892, 0.9198, 0.9338, 0.9444, 0.9266, 0.9096, 0.8726, 0.8188, 0.587, 0.3996, 0.36, 0.3332, 0.3274, 0.33, 0.3342, 0.3392, 0.3438, 0.352, 0.3598, 0.3666, 0.3804, 0.4126, 0.4444, 0.491, 0.5258, 0.545, 0.5836, 0.638, 0.6592, 0.765], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PP2C_2.gap.json b/pfam_gap_rates/PP2C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5449c323fc106ade8bfc5117e64faaebed8ef44
--- /dev/null
+++ b/pfam_gap_rates/PP2C_2.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/PPE.gap.json b/pfam_gap_rates/PPE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..395f10e9c15ce7d5f5a125b78ffb53ee9b31366e
--- /dev/null
+++ b/pfam_gap_rates/PPE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PPP4R2.gap.json b/pfam_gap_rates/PPP4R2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bfbaeb05838ffc0ffc25a96b8e509f8f71bd1706
--- /dev/null
+++ b/pfam_gap_rates/PPP4R2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PPTA.gap.json b/pfam_gap_rates/PPTA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..460209acd9cb8b96f3b90c37119c447e41cd6f31
--- /dev/null
+++ b/pfam_gap_rates/PPTA.gap.json
@@ -0,0 +1 @@
+{"family": "PPTA", "n_seqs": 2538, "length": 28, "gap_rates": [0.272655634357762, 0.1020488573680063, 0.06461780929866036, 0.04176516942474389, 0.02876280535855004, 0.02127659574468085, 0.015366430260047281, 0.006698187549251379, 0.005516154452324665, 0.003940110323089046, 0.0031520882584712374, 0.002364066193853428, 0.0003940110323089047, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0003940110323089047, 0.0031520882584712374, 0.016548463356973995, 0.029944838455476755, 0.04609929078014184, 0.11426319936958235, 0.31757289204097716, 0.7111899133175729], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PP_kinase.gap.json b/pfam_gap_rates/PP_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ced75a932cbb82e1622b47e9b81736d47ca7524d
--- /dev/null
+++ b/pfam_gap_rates/PP_kinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PRTase_1.gap.json b/pfam_gap_rates/PRTase_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..114d9ef61321dbbf92d64899b65605f39e0f2cf6
--- /dev/null
+++ b/pfam_gap_rates/PRTase_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PSII_Pbs27.gap.json b/pfam_gap_rates/PSII_Pbs27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04fa5769826840008e0559d5969a165ee972fa7d
--- /dev/null
+++ b/pfam_gap_rates/PSII_Pbs27.gap.json
@@ -0,0 +1 @@
+{"family": "PSII_Pbs27", "n_seqs": 150, "length": 198, "gap_rates": [0.8266666666666667, 0.7133333333333334, 0.7066666666666667, 0.7066666666666667, 0.7133333333333334, 0.7066666666666667, 0.7, 0.7066666666666667, 0.6866666666666666, 0.68, 0.6666666666666666, 0.66, 0.66, 0.66, 0.66, 0.64, 0.64, 0.6066666666666667, 0.7666666666666667, 0.78, 0.7866666666666666, 0.8066666666666666, 0.8133333333333334, 0.82, 0.8333333333333334, 0.8466666666666667, 0.8733333333333333, 0.8866666666666667, 0.9333333333333333, 0.94, 0.9066666666666666, 0.8866666666666667, 0.8666666666666667, 0.8333333333333334, 0.8266666666666667, 0.82, 0.8066666666666666, 0.8066666666666666, 0.7866666666666666, 0.7666666666666667, 0.7666666666666667, 0.5733333333333334, 0.5666666666666667, 0.5533333333333333, 0.5533333333333333, 0.5466666666666666, 0.5466666666666666, 0.54, 0.54, 0.5466666666666666, 0.5533333333333333, 0.5733333333333334, 0.6, 0.6066666666666667, 0.6066666666666667, 0.5933333333333334, 0.5933333333333334, 0.5866666666666667, 0.54, 0.5133333333333333, 0.46, 0.3333333333333333, 0.8, 0.8, 0.8266666666666667, 0.8333333333333334, 0.84, 0.84, 0.86, 0.86, 0.8733333333333333, 0.8866666666666667, 0.8933333333333333, 0.9133333333333333, 0.9333333333333333, 0.9466666666666667, 0.9466666666666667, 0.94, 0.92, 0.9, 0.8933333333333333, 0.88, 0.8733333333333333, 0.86, 0.8533333333333334, 0.84, 0.84, 0.8266666666666667, 0.82, 0.8, 0.7933333333333333, 0.1, 0.08, 0.06666666666666667, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.92, 0.8666666666666667, 0.72, 0.04666666666666667, 0.04, 0.04, 0.04, 0.04, 0.04, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.02666666666666667, 0.05333333333333334, 0.04666666666666667, 0.9466666666666667, 0.9466666666666667, 0.9466666666666667, 0.04666666666666667, 0.04666666666666667, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.04666666666666667, 0.04666666666666667, 0.02666666666666667, 0.02, 0.02, 0.02, 0.02, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.4, 0.04, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.05333333333333334, 0.13333333333333333, 0.22666666666666666, 0.28], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSI_PsaE.gap.json b/pfam_gap_rates/PSI_PsaE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..431e59f58129e825d1975aa5bc3c91e6cef94395
--- /dev/null
+++ b/pfam_gap_rates/PSI_PsaE.gap.json
@@ -0,0 +1 @@
+{"family": "PSI_PsaE", "n_seqs": 126, "length": 68, "gap_rates": [0.4603174603174603, 0.07142857142857142, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.6111111111111112, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.7619047619047619, 0.7619047619047619, 0.7619047619047619, 0.7619047619047619, 0.7619047619047619, 0.7619047619047619, 0.7619047619047619, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.09523809523809523, 0.25396825396825395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSP1.gap.json b/pfam_gap_rates/PSP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..245abf14d2022b5d25a476cbf63df5c4fbc22a83
--- /dev/null
+++ b/pfam_gap_rates/PSP1.gap.json
@@ -0,0 +1 @@
+{"family": "PSP1", "n_seqs": 1183, "length": 87, "gap_rates": [0.4175824175824176, 0.16821639898562976, 0.06170752324598478, 0.03888419273034658, 0.030431107354184278, 0.02282333051563821, 0.02282333051563821, 0.02197802197802198, 0.021132713440405747, 0.016060862214708368, 0.014370245139475908, 0.01267962806424345, 0.011834319526627219, 0.011834319526627219, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01014370245139476, 0.01098901098901099, 0.94843617920541, 0.009298393913778529, 0.009298393913778529, 0.0084530853761623, 0.0084530853761623, 0.0084530853761623, 0.0076077768385460695, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.0076077768385460695, 0.0076077768385460695, 0.0076077768385460695, 0.006762468300929839, 0.005917159763313609, 0.005917159763313609, 0.006762468300929839, 0.005917159763313609, 0.00507185122569738, 0.00507185122569738, 0.0008453085376162299, 0.0008453085376162299, 0.0008453085376162299, 0.0008453085376162299, 0.0008453085376162299, 0.0008453085376162299, 0.0008453085376162299, 0.0008453085376162299, 0.0008453085376162299, 0.0016906170752324597, 0.005917159763313609, 0.005917159763313609, 0.00507185122569738, 0.005917159763313609, 0.00507185122569738, 0.00507185122569738, 0.00507185122569738, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.006762468300929839, 0.0076077768385460695, 0.0084530853761623, 0.009298393913778529, 0.01098901098901099, 0.01098901098901099, 0.013524936601859678, 0.013524936601859678, 0.015215553677092139, 0.029585798816568046, 0.07776838546069316, 0.1445477599323753], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTH2.gap.json b/pfam_gap_rates/PTH2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e74de0be837c3fbc82bfeccaa5f63a2f44319999
--- /dev/null
+++ b/pfam_gap_rates/PTH2.gap.json
@@ -0,0 +1 @@
+{"family": "PTH2", "n_seqs": 820, "length": 130, "gap_rates": [0.6268292682926829, 0.2597560975609756, 0.1926829268292683, 0.1329268292682927, 0.11219512195121951, 0.10975609756097561, 0.1024390243902439, 0.0975609756097561, 0.09268292682926829, 0.08780487804878048, 0.08292682926829269, 0.8085365853658537, 0.8621951219512195, 0.8524390243902439, 0.7963414634146342, 0.08048780487804878, 0.0524390243902439, 0.05, 0.0475609756097561, 0.0475609756097561, 0.0475609756097561, 0.04390243902439024, 0.045121951219512194, 0.04024390243902439, 0.036585365853658534, 0.0475609756097561, 0.05, 0.032926829268292684, 0.03048780487804878, 0.03170731707317073, 0.032926829268292684, 0.032926829268292684, 0.032926829268292684, 0.03414634146341464, 0.032926829268292684, 0.03902439024390244, 0.042682926829268296, 0.042682926829268296, 0.03536585365853658, 0.05731707317073171, 0.09268292682926829, 0.10121951219512196, 0.6048780487804878, 0.8646341463414634, 0.9146341463414634, 0.9341463414634147, 0.947560975609756, 0.9329268292682927, 0.8780487804878049, 0.8512195121951219, 0.5902439024390244, 0.21829268292682927, 0.14634146341463414, 0.11219512195121951, 0.042682926829268296, 0.032926829268292684, 0.041463414634146344, 0.12195121951219512, 0.10121951219512196, 0.032926829268292684, 0.9207317073170732, 0.02926829268292683, 0.02926829268292683, 0.032926829268292684, 0.032926829268292684, 0.03170731707317073, 0.03048780487804878, 0.026829268292682926, 0.02926829268292683, 0.026829268292682926, 0.03414634146341464, 0.07560975609756097, 0.045121951219512194, 0.042682926829268296, 0.05365853658536585, 0.05365853658536585, 0.06829268292682927, 0.06463414634146342, 0.05853658536585366, 0.05121951219512195, 0.05, 0.04390243902439024, 0.04024390243902439, 0.03536585365853658, 0.03902439024390244, 0.041463414634146344, 0.03780487804878049, 0.045121951219512194, 0.05, 0.054878048780487805, 0.1, 0.09390243902439024, 0.042682926829268296, 0.045121951219512194, 0.045121951219512194, 0.2634146341463415, 0.2621951219512195, 0.2634146341463415, 0.26097560975609757, 0.2634146341463415, 0.2475609756097561, 0.08292682926829269, 0.05731707317073171, 0.8134146341463414, 0.05731707317073171, 0.05731707317073171, 0.06097560975609756, 0.05731707317073171, 0.05853658536585366, 0.06219512195121951, 0.06585365853658537, 0.08780487804878048, 0.11707317073170732, 0.22439024390243903, 0.12439024390243902, 0.14878048780487804, 0.16219512195121952, 0.17317073170731706, 0.18536585365853658, 0.19390243902439025, 0.19390243902439025, 0.19634146341463415, 0.19878048780487806, 0.2, 0.2, 0.20365853658536584, 0.2121951219512195, 0.21829268292682927, 0.22439024390243903, 0.30609756097560975], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTR.gap.json b/pfam_gap_rates/PTR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77c465e40ac98293d8d375dd6b53f2c8690002ef
--- /dev/null
+++ b/pfam_gap_rates/PTR.gap.json
@@ -0,0 +1 @@
+{"family": "PTR", "n_seqs": 1777, "length": 60, "gap_rates": [0.6077658975801913, 0.5430500844119303, 0.5413618458075408, 0.47326955543050087, 0.46764209341586943, 0.4434440067529544, 0.31795160382667415, 0.2903770399549803, 0.24985931344963422, 0.24310635903207653, 0.23522791221159256, 0.19696117051209905, 0.1637591446257738, 0.16319639842431063, 0.13111986494091166, 0.11029825548677546, 0.056837366347777155, 0.05346088913899831, 0.05008441193021947, 0.04558244231851435, 0.011254924029262802, 0.012380416432189083, 0.017445132245357344, 0.016882386043894203, 0.018570624648283626, 0.014068655036578503, 0.011254924029262802, 0.021384355655599326, 0.05289814293753517, 0.10861001688238604, 0.1108610016882386, 0.1193021947101857, 0.4068655036578503, 0.4147439504783343, 0.41755768148565, 0.4395047833427124, 0.4395047833427124, 0.4395047833427124, 0.43781654473832304, 0.4389420371412493, 0.4395047833427124, 0.4395047833427124, 0.44063027574563873, 0.441755768148565, 0.44400675295441755, 0.4490714687675858, 0.46201463140123805, 0.46201463140123805, 0.46595385481148, 0.4766460326392797, 0.5030951041080473, 0.562183455261677, 0.5638716938660664, 0.5689364096792346, 0.6043894203714125, 0.6252110298255487, 0.6555993247045583, 0.7175014068655037, 0.7220033764772088, 0.7236916150815982], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PUL.gap.json b/pfam_gap_rates/PUL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e78e909b326a7c68f737c68d9ea4e02ad1ea9b76
--- /dev/null
+++ b/pfam_gap_rates/PUL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PUNUT.gap.json b/pfam_gap_rates/PUNUT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b61da0c433b2be58701ad1fd40dfc80882158a99
--- /dev/null
+++ b/pfam_gap_rates/PUNUT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PXA.gap.json b/pfam_gap_rates/PXA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a27f1f28d53956eaf0c95b0e55c0fa709a86990b
--- /dev/null
+++ b/pfam_gap_rates/PXA.gap.json
@@ -0,0 +1 @@
+{"family": "PXA", "n_seqs": 684, "length": 225, "gap_rates": [0.8406432748538012, 0.4283625730994152, 0.260233918128655, 0.17690058479532164, 0.15350877192982457, 0.14619883040935672, 0.13304093567251463, 0.1286549707602339, 0.12426900584795321, 0.1111111111111111, 0.1023391812865497, 0.097953216374269, 0.09649122807017543, 0.09502923976608187, 0.08771929824561403, 0.08625730994152046, 0.08625730994152046, 0.08625730994152046, 0.08625730994152046, 0.08625730994152046, 0.08625730994152046, 0.0847953216374269, 0.8947368421052632, 0.08333333333333333, 0.08333333333333333, 0.9415204678362573, 0.08187134502923976, 0.0804093567251462, 0.07894736842105263, 0.8450292397660819, 0.07748538011695906, 0.0804093567251462, 0.8830409356725146, 0.07894736842105263, 0.07602339181286549, 0.07163742690058479, 0.06871345029239766, 0.06871345029239766, 0.06725146198830409, 0.06725146198830409, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06432748538011696, 0.06140350877192982, 0.06140350877192982, 0.059941520467836254, 0.059941520467836254, 0.06140350877192982, 0.059941520467836254, 0.05701754385964912, 0.05701754385964912, 0.05847953216374269, 0.05847953216374269, 0.8947368421052632, 0.05847953216374269, 0.06140350877192982, 0.8991228070175439, 0.8947368421052632, 0.05847953216374269, 0.05555555555555555, 0.9254385964912281, 0.10526315789473684, 0.07163742690058479, 0.07748538011695906, 0.0804093567251462, 0.06725146198830409, 0.059941520467836254, 0.9078947368421053, 0.9064327485380117, 0.05555555555555555, 0.049707602339181284, 0.04532163742690058, 0.04532163742690058, 0.04532163742690058, 0.043859649122807015, 0.043859649122807015, 0.04532163742690058, 0.043859649122807015, 0.04239766081871345, 0.04239766081871345, 0.05555555555555555, 0.07602339181286549, 0.08187134502923976, 0.07748538011695906, 0.07602339181286549, 0.07456140350877193, 0.0804093567251462, 0.08333333333333333, 0.06286549707602339, 0.14327485380116958, 0.16228070175438597, 0.1871345029239766, 0.2236842105263158, 0.2646198830409357, 0.40058479532163743, 0.49415204678362573, 0.5614035087719298, 0.6081871345029239, 0.6418128654970761, 0.8713450292397661, 0.8947368421052632, 0.9195906432748538, 0.9269005847953217, 0.9385964912280702, 0.9429824561403509, 0.9429824561403509, 0.9429824561403509, 0.9473684210526315, 0.9488304093567251, 0.945906432748538, 0.9429824561403509, 0.9429824561403509, 0.9385964912280702, 0.935672514619883, 0.9269005847953217, 0.9093567251461988, 0.881578947368421, 0.7441520467836257, 0.6286549707602339, 0.5921052631578947, 0.5263157894736842, 0.44298245614035087, 0.28654970760233917, 0.24269005847953215, 0.20175438596491227, 0.1783625730994152, 0.15204678362573099, 0.1301169590643275, 0.07163742690058479, 0.16666666666666666, 0.15350877192982457, 0.1476608187134503, 0.0935672514619883, 0.9093567251461988, 0.9415204678362573, 0.8859649122807017, 0.0847953216374269, 0.0804093567251462, 0.07602339181286549, 0.07748538011695906, 0.07602339181286549, 0.07894736842105263, 0.08333333333333333, 0.1154970760233918, 0.5292397660818714, 0.47514619883040937, 0.34649122807017546, 0.5730994152046783, 0.7383040935672515, 0.7777777777777778, 0.8742690058479532, 0.8918128654970761, 0.8830409356725146, 0.8669590643274854, 0.7646198830409356, 0.6754385964912281, 0.5350877192982456, 0.08333333333333333, 0.097953216374269, 0.0891812865497076, 0.07894736842105263, 0.049707602339181284, 0.04824561403508772, 0.04824561403508772, 0.04678362573099415, 0.04824561403508772, 0.049707602339181284, 0.049707602339181284, 0.04824561403508772, 0.04824561403508772, 0.04824561403508772, 0.049707602339181284, 0.04678362573099415, 0.04678362573099415, 0.08771929824561403, 0.05116959064327485, 0.05116959064327485, 0.05116959064327485, 0.049707602339181284, 0.05847953216374269, 0.06432748538011696, 0.06286549707602339, 0.06286549707602339, 0.05701754385964912, 0.05701754385964912, 0.06725146198830409, 0.05847953216374269, 0.05701754385964912, 0.05847953216374269, 0.05701754385964912, 0.05701754385964912, 0.05701754385964912, 0.06140350877192982, 0.06725146198830409, 0.059941520467836254, 0.06432748538011696, 0.06578947368421052, 0.06725146198830409, 0.06871345029239766, 0.07163742690058479, 0.09210526315789473, 0.07894736842105263, 0.08187134502923976, 0.0804093567251462, 0.07748538011695906, 0.9195906432748538, 0.07602339181286549, 0.195906432748538, 0.07602339181286549, 0.07456140350877193, 0.07602339181286549, 0.07748538011695906, 0.07894736842105263, 0.07894736842105263, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.0891812865497076, 0.09941520467836257, 0.15935672514619884, 0.4546783625730994, 0.8377192982456141], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/P_proprotein.gap.json b/pfam_gap_rates/P_proprotein.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..efaecc6efb2599c1bbd733f56af48994b059c196
--- /dev/null
+++ b/pfam_gap_rates/P_proprotein.gap.json
@@ -0,0 +1 @@
+{"family": "P_proprotein", "n_seqs": 959, "length": 124, "gap_rates": [0.40875912408759124, 0.29927007299270075, 0.2064650677789364, 0.13138686131386862, 0.09801876955161627, 0.08029197080291971, 0.06256517205422316, 0.053180396246089674, 0.047966631908237745, 0.047966631908237745, 0.03962460896767466, 0.03858185610010428, 0.035453597497393116, 0.03128258602711158, 0.026068821689259645, 0.02502606882168926, 0.021897810218978103, 0.020855057351407715, 0.020855057351407715, 0.020855057351407715, 0.01981230448383733, 0.018769551616266946, 0.018769551616266946, 0.018769551616266946, 0.028154327424400417, 0.018769551616266946, 0.016684045881126174, 0.016684045881126174, 0.01564129301355579, 0.017726798748696558, 0.018769551616266946, 0.017726798748696558, 0.01564129301355579, 0.016684045881126174, 0.022940563086548488, 0.020855057351407715, 0.01981230448383733, 0.01981230448383733, 0.9113660062565172, 0.9238790406673618, 0.9290928050052137, 0.9374348279457768, 0.9416058394160584, 0.9499478623566214, 0.9395203336809176, 0.9332638164754953, 0.9280500521376434, 0.9186652763295099, 0.8362877997914494, 0.28884254431699685, 0.28779979144942647, 0.1981230448383733, 0.05213764337851929, 0.045881126173096975, 0.045881126173096975, 0.03858185610010428, 0.03858185610010428, 0.03858185610010428, 0.03962460896767466, 0.03962460896767466, 0.03962460896767466, 0.020855057351407715, 0.8633993743482794, 0.8654848800834203, 0.8696558915537018, 0.9019812304483837, 0.9113660062565172, 0.9144942648592284, 0.9197080291970803, 0.9280500521376434, 0.9322210636079249, 0.9343065693430657, 0.9436913451511991, 0.9478623566214807, 0.9384775808133472, 0.9322210636079249, 0.9301355578727841, 0.9249217935349322, 0.9155370177267987, 0.9124087591240876, 0.9092805005213764, 0.899895724713243, 0.8665276329509907, 0.8644421272158499, 0.8602711157455682, 0.022940563086548488, 0.022940563086548488, 0.13660062565172054, 0.029197080291970802, 0.023983315954118872, 0.022940563086548488, 0.023983315954118872, 0.023983315954118872, 0.023983315954118872, 0.02502606882168926, 0.02502606882168926, 0.02502606882168926, 0.02502606882168926, 0.02502606882168926, 0.02502606882168926, 0.027111574556830033, 0.028154327424400417, 0.03128258602711158, 0.035453597497393116, 0.8143899895724713, 0.9457768508863399, 0.9061522419186653, 0.5464025026068822, 0.1105318039624609, 0.07924921793534932, 0.09176225234619395, 0.10010427528675704, 0.1105318039624609, 0.12095933263816476, 0.12930135557872785, 0.13764337851929093, 0.14389989572471323, 0.1553701772679875, 0.15954118873826903, 0.16579770594369134, 0.17518248175182483, 0.17935349322210636, 0.23983315954118875, 0.6193952033368092], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PaREP1.gap.json b/pfam_gap_rates/PaREP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62b963f70c403cb718c620f09f0618c6d4dcbfce
--- /dev/null
+++ b/pfam_gap_rates/PaREP1.gap.json
@@ -0,0 +1 @@
+{"family": "PaREP1", "n_seqs": 125, "length": 132, "gap_rates": [0.776, 0.304, 0.208, 0.144, 0.12, 0.112, 0.096, 0.096, 0.096, 0.096, 0.096, 0.088, 0.088, 0.088, 0.088, 0.088, 0.08, 0.072, 0.072, 0.136, 0.056, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.072, 0.072, 0.08, 0.08, 0.4, 0.384, 0.384, 0.384, 0.384, 0.408, 0.744, 0.4, 0.384, 0.208, 0.096, 0.088, 0.08, 0.08, 0.096, 0.112, 0.08, 0.088, 0.072, 0.056, 0.768, 0.768, 0.768, 0.784, 0.92, 0.928, 0.944, 0.92, 0.808, 0.768, 0.768, 0.768, 0.768, 0.048, 0.048, 0.048, 0.048, 0.048, 0.04, 0.04, 0.04, 0.056, 0.136, 0.096, 0.096, 0.088, 0.488, 0.104, 0.08, 0.064, 0.064, 0.064, 0.064, 0.064, 0.064, 0.064, 0.064, 0.064, 0.072, 0.936, 0.08, 0.08, 0.08, 0.08, 0.36, 0.76, 0.744, 0.08, 0.08, 0.072, 0.072, 0.072, 0.112, 0.112, 0.08, 0.08, 0.072, 0.072, 0.08, 0.08, 0.08, 0.088, 0.088, 0.088, 0.096, 0.096, 0.144, 0.224, 0.456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pan_kinase.gap.json b/pfam_gap_rates/Pan_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39ac385113c41e504b9fd1f40d6e902850ea1ff9
--- /dev/null
+++ b/pfam_gap_rates/Pan_kinase.gap.json
@@ -0,0 +1 @@
+{"family": "Pan_kinase", "n_seqs": 1432, "length": 216, "gap_rates": [0.36731843575418993, 0.09567039106145252, 0.07262569832402235, 0.06634078212290503, 0.06215083798882681, 0.05377094972067039, 0.05377094972067039, 0.05377094972067039, 0.05377094972067039, 0.05377094972067039, 0.05377094972067039, 0.05307262569832402, 0.052374301675977654, 0.051675977653631286, 0.051675977653631286, 0.051675977653631286, 0.14106145251396648, 0.1473463687150838, 0.138268156424581, 0.9455307262569832, 0.9189944134078212, 0.16550279329608938, 0.17597765363128492, 0.16061452513966482, 0.09217877094972067, 0.0935754189944134, 0.07891061452513966, 0.07681564245810056, 0.07611731843575419, 0.8987430167597765, 0.8603351955307262, 0.14594972067039105, 0.1180167597765363, 0.09916201117318436, 0.0914804469273743, 0.07960893854748603, 0.07402234636871509, 0.07541899441340782, 0.12849162011173185, 0.09846368715083799, 0.07751396648044692, 0.06564245810055866, 0.05656424581005587, 0.055167597765363126, 0.051675977653631286, 0.05097765363128492, 0.051675977653631286, 0.052374301675977654, 0.05027932960893855, 0.05656424581005587, 0.055167597765363126, 0.0712290502793296, 0.07262569832402235, 0.08868715083798882, 0.11103351955307263, 0.30656424581005587, 0.2611731843575419, 0.3994413407821229, 0.45321229050279327, 0.3756983240223464, 0.1717877094972067, 0.13128491620111732, 0.04259776536312849, 0.04189944134078212, 0.04120111731843575, 0.04120111731843575, 0.04120111731843575, 0.040502793296089384, 0.0446927374301676, 0.04329608938547486, 0.04958100558659218, 0.0446927374301676, 0.04888268156424581, 0.04259776536312849, 0.04259776536312849, 0.04189944134078212, 0.04189944134078212, 0.04189944134078212, 0.04329608938547486, 0.04189944134078212, 0.04120111731843575, 0.04120111731843575, 0.04539106145251397, 0.1452513966480447, 0.12639664804469275, 0.9350558659217877, 0.1138268156424581, 0.0914804469273743, 0.07053072625698324, 0.05865921787709497, 0.04189944134078212, 0.04259776536312849, 0.0446927374301676, 0.6354748603351955, 0.06424581005586592, 0.0356145251396648, 0.034916201117318434, 0.031424581005586594, 0.031424581005586594, 0.030726256983240222, 0.02863128491620112, 0.02723463687150838, 0.027932960893854747, 0.02723463687150838, 0.030027932960893854, 0.07472067039106145, 0.08030726256983241, 0.06075418994413408, 0.01675977653631285, 0.013268156424581005, 0.011871508379888268, 0.011871508379888268, 0.012569832402234637, 0.012569832402234637, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.012569832402234637, 0.012569832402234637, 0.013268156424581005, 0.014664804469273743, 0.01606145251396648, 0.08170391061452514, 0.03910614525139665, 0.9322625698324022, 0.6752793296089385, 0.023044692737430168, 0.10125698324022346, 0.027932960893854747, 0.025837988826815643, 0.012569832402234637, 0.011871508379888268, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.0111731843575419, 0.052374301675977654, 0.01606145251396648, 0.014664804469273743, 0.04329608938547486, 0.018156424581005588, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.011871508379888268, 0.012569832402234637, 0.013268156424581005, 0.012569832402234637, 0.012569832402234637, 0.012569832402234637, 0.014664804469273743, 0.012569832402234637, 0.013268156424581005, 0.012569832402234637, 0.013268156424581005, 0.015363128491620111, 0.015363128491620111, 0.013268156424581005, 0.013966480446927373, 0.16061452513966482, 0.13477653631284917, 0.13337988826815642, 0.0893854748603352, 0.08449720670391062, 0.03910614525139665, 0.03840782122905028, 0.7520949720670391, 0.10125698324022346, 0.7053072625698324, 0.6662011173184358, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.017458100558659217, 0.018156424581005588, 0.017458100558659217, 0.018156424581005588, 0.019553072625698324, 0.020251396648044692, 0.020251396648044692, 0.02094972067039106, 0.023044692737430168, 0.02723463687150838, 0.034916201117318434, 0.04888268156424581, 0.07192737430167598, 0.11592178770949721, 0.2430167597765363, 0.7213687150837989], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ParcG.gap.json b/pfam_gap_rates/ParcG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bcb6d05c42b5a55d9aa0d899102718a7245e302e
--- /dev/null
+++ b/pfam_gap_rates/ParcG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PdxA.gap.json b/pfam_gap_rates/PdxA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f7567e5a46e6d84c63f0b53a2300799da82aeff
--- /dev/null
+++ b/pfam_gap_rates/PdxA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PdxJ.gap.json b/pfam_gap_rates/PdxJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea83d2510c7be91e7b0fb286b94ce4b1086d9d8d
--- /dev/null
+++ b/pfam_gap_rates/PdxJ.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PemK_toxin.gap.json b/pfam_gap_rates/PemK_toxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29cbed2687c4bce4168f1f44a732bec3c7a6534f
--- /dev/null
+++ b/pfam_gap_rates/PemK_toxin.gap.json
@@ -0,0 +1 @@
+{"family": "PemK_toxin", "n_seqs": 2148, "length": 118, "gap_rates": [0.5162942271880819, 0.18063314711359404, 0.1084729981378026, 0.09124767225325885, 0.08705772811918064, 0.08286778398510242, 0.0782122905027933, 0.074487895716946, 0.07309124767225327, 0.0712290502793296, 0.2807262569832402, 0.12988826815642457, 0.9110800744878957, 0.12523277467411545, 0.1419925512104283, 0.9064245810055865, 0.10474860335195531, 0.08659217877094973, 0.07681564245810056, 0.10614525139664804, 0.05865921787709497, 0.04422718808193669, 0.034916201117318434, 0.0335195530726257, 0.033054003724394786, 0.03165735567970205, 0.024208566108007448, 0.024208566108007448, 0.024208566108007448, 0.03957169459962756, 0.0446927374301676, 0.03398510242085661, 0.10242085661080075, 0.06983240223463687, 0.08100558659217877, 0.148975791433892, 0.2099627560521415, 0.9473929236499069, 0.3393854748603352, 0.11219739292364991, 0.027932960893854747, 0.020018621973929236, 0.017690875232774673, 0.019087523277467412, 0.017690875232774673, 0.01722532588454376, 0.01722532588454376, 0.015828677839851025, 0.016294227188081937, 0.015828677839851025, 0.016294227188081937, 0.15223463687150837, 0.3878026070763501, 0.08798882681564246, 0.34171322160148976, 0.29329608938547486, 0.4068901303538175, 0.025139664804469275, 0.021415270018621976, 0.01675977653631285, 0.01722532588454376, 0.017690875232774673, 0.01722532588454376, 0.0186219739292365, 0.03910614525139665, 0.13221601489757914, 0.7965549348230913, 0.6634078212290503, 0.5917132216014898, 0.24208566108007448, 0.07635009310986965, 0.15456238361266295, 0.3878026070763501, 0.48044692737430167, 0.4101489757914339, 0.4655493482309125, 0.17970204841713222, 0.021415270018621976, 0.020484171322160148, 0.020484171322160148, 0.019553072625698324, 0.020484171322160148, 0.02094972067039106, 0.038640595903165736, 0.0223463687150838, 0.023277467411545624, 0.023743016759776536, 0.023743016759776536, 0.024208566108007448, 0.8635940409683427, 0.024674115456238363, 0.025605214152700187, 0.027467411545623835, 0.027001862197392923, 0.9441340782122905, 0.028864059590316574, 0.031191806331471134, 0.029329608938547486, 0.0297951582867784, 0.031191806331471134, 0.0335195530726257, 0.035381750465549346, 0.038640595903165736, 0.040502793296089384, 0.043761638733705775, 0.043761638733705775, 0.049348230912476726, 0.051675977653631286, 0.05493482309124767, 0.0595903165735568, 0.06983240223463687, 0.08379888268156424, 0.09636871508379888, 0.11359404096834265, 0.1494413407821229, 0.24208566108007448, 0.36266294227188084, 0.7970204841713222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C50.gap.json b/pfam_gap_rates/Peptidase_C50.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eba5ef9d50ba58619def94a6fa701c8a37b07cf4
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C50.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C97.gap.json b/pfam_gap_rates/Peptidase_C97.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54bbba6b34c8d985bfd01e9ba712026d6381fedc
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C97.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C97", "n_seqs": 883, "length": 162, "gap_rates": [0.2718006795016987, 0.18346545866364666, 0.16987542468856173, 0.16761041902604756, 0.1664779161947905, 0.16761041902604756, 0.16421291053227632, 0.16421291053227632, 0.16421291053227632, 0.16421291053227632, 0.5062287655719139, 0.4971687429218573, 0.49490373725934317, 0.18346545866364666, 0.5741789354473387, 0.5549263873159683, 0.5458663646659117, 0.5062287655719139, 0.4971687429218573, 0.47451868629671573, 0.9297848244620611, 0.9343148357870895, 0.9479048697621744, 0.942242355605889, 0.9320498301245753, 0.9241223103057757, 0.12344280860702152, 0.12004530011325028, 0.15288788221970556, 0.1347678369195923, 0.10419026047565119, 0.10645526613816535, 0.1143827859569649, 0.6477916194790487, 0.6330690826727067, 0.578708946772367, 0.0928652321630804, 0.08833522083805209, 0.08267270668176671, 0.072480181200453, 0.06908267270668177, 0.06795016987542468, 0.06795016987542468, 0.06681766704416761, 0.06568516421291053, 0.06002265005662514, 0.05889014722536806, 0.057757644394110984, 0.9399773499433749, 0.056625141562853906, 0.05549263873159683, 0.05549263873159683, 0.05549263873159683, 0.11891279728199321, 0.06568516421291053, 0.4405436013590034, 0.4360135900339751, 0.434881087202718, 0.4246885617214043, 0.46885617214043035, 0.8912797281993206, 0.25141562853907135, 0.057757644394110984, 0.05889014722536806, 0.057757644394110984, 0.056625141562853906, 0.05889014722536806, 0.05889014722536806, 0.05889014722536806, 0.06002265005662514, 0.056625141562853906, 0.8437146092865232, 0.8788221970554927, 0.8335220838052095, 0.43714609286523215, 0.06455266138165346, 0.061155152887882216, 0.05889014722536806, 0.36579841449603623, 0.05889014722536806, 0.04869762174405436, 0.04983012457531144, 0.04756511891279728, 0.045300113250283124, 0.044167610419026046, 0.04190260475651189, 0.03850509626274066, 0.03850509626274066, 0.04077010192525481, 0.04190260475651189, 0.04077010192525481, 0.04077010192525481, 0.03737259343148358, 0.03850509626274066, 0.03850509626274066, 0.0362400906002265, 0.031710079275198186, 0.031710079275198186, 0.03397508493771234, 0.03284258210645526, 0.03397508493771234, 0.03397508493771234, 0.035107587768969425, 0.03284258210645526, 0.035107587768969425, 0.03397508493771234, 0.9105322763306908, 0.04077010192525481, 0.9490373725934315, 0.0362400906002265, 0.031710079275198186, 0.030577576443941108, 0.028312570781426953, 0.031710079275198186, 0.030577576443941108, 0.03284258210645526, 0.03397508493771234, 0.03397508493771234, 0.03397508493771234, 0.03397508493771234, 0.035107587768969425, 0.0362400906002265, 0.03737259343148358, 0.03737259343148358, 0.03850509626274066, 0.03850509626274066, 0.03850509626274066, 0.03737259343148358, 0.03737259343148358, 0.03850509626274066, 0.04190260475651189, 0.045300113250283124, 0.04983012457531144, 0.056625141562853906, 0.06681766704416761, 0.072480181200453, 0.07814269535673839, 0.08493771234428087, 0.08720271800679502, 0.08833522083805209, 0.09399773499433749, 0.09513023782559456, 0.09513023782559456, 0.09626274065685164, 0.09739524348810873, 0.0985277463193658, 0.10419026047565119, 0.11098527746319366, 0.11891279728199321, 0.13250283125707815, 0.40770101925254815, 0.4360135900339751, 0.46772366930917325, 0.2853907134767837, 0.304643261608154, 0.3114382785956965, 0.3023782559456399, 0.31370328425821065, 0.38052095130237823, 0.41223103057757643, 0.5696489241223103, 0.7791619479048698], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M13.gap.json b/pfam_gap_rates/Peptidase_M13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..894558a185b26185d42c4ef01e0205f33bec4d1e
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M13.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M13", "n_seqs": 1901, "length": 216, "gap_rates": [0.2861651762230405, 0.2325092056812204, 0.2183061546554445, 0.19936875328774328, 0.19673855865334033, 0.19831667543398213, 0.18779589689637033, 0.17569700157811677, 0.17201472908995266, 0.1699105733824303, 0.1693845344555497, 0.16885849552866913, 0.16201998947922147, 0.1604418726985797, 0.15886375591793792, 0.15833771699105734, 0.15781167806417676, 0.1546554445028932, 0.1551814834297738, 0.15360336664913204, 0.15149921094160967, 0.1509731720147291, 0.14886901630720673, 0.14781693845344557, 0.14676486059968438, 0.14203051025775906, 0.16307206733298263, 0.1404523934771173, 0.13466596528143082, 0.13256180957390848, 0.12940557601262492, 0.12835349815886377, 0.1262493424513414, 0.1262493424513414, 0.12572330352446082, 0.12467122567069963, 0.12467122567069963, 0.12467122567069963, 0.1251972645975802, 0.12361914781693846, 0.12361914781693846, 0.12361914781693846, 0.12467122567069963, 0.1215149921094161, 0.11941083640189375, 0.12046291425565492, 0.11783271962125197, 0.11467648605996844, 0.11415044713308785, 0.11467648605996844, 0.10941609679116254, 0.10836401893740137, 0.10994213571804314, 0.11520252498684903, 0.1367701209889532, 0.13413992635455024, 0.13256180957390848, 0.1304576538663861, 0.126775381378222, 0.13940031562335614, 0.1367701209889532, 0.12940557601262492, 0.11467648605996844, 0.11415044713308785, 0.11257233035244608, 0.11046817464492373, 0.11046817464492373, 0.1067859021567596, 0.10783798001052078, 0.10468174644923724, 0.10310362966859547, 0.10099947396107312, 0.09942135718043135, 0.097317201472909, 0.097317201472909, 0.09626512361914781, 0.09573908469226723, 0.09468700683850605, 0.09521304576538664, 0.097317201472909, 0.0967911625460284, 0.10152551288795371, 0.10362966859547607, 0.10625986322987901, 0.10836401893740137, 0.10994213571804314, 0.11362440820620726, 0.11835875854813256, 0.12414518674381904, 0.12835349815886377, 0.1304576538663861, 0.12940557601262492, 0.28879537085744345, 0.5165702261967385, 0.8037874802735402, 0.9195160441872698, 0.9479221462388217, 0.8537611783271962, 0.7190952130457654, 0.15307732772225144, 0.13203577064702787, 0.1251972645975802, 0.11572856391372961, 0.10625986322987901, 0.10468174644923724, 0.09836927932667017, 0.097317201472909, 0.09889531825355076, 0.097317201472909, 0.09573908469226723, 0.09468700683850605, 0.09310889005786428, 0.0920568122041031, 0.09100473435034193, 0.08995265649658074, 0.08574434508153603, 0.08364018937401367, 0.08416622830089426, 0.09258285113098369, 0.0825881115202525, 0.0825881115202525, 0.08153603366649131, 0.08153603366649131, 0.08679642293529721, 0.08521830615465545, 0.3387690689110994, 0.6081009994739611, 0.902682798527091, 0.9195160441872698, 0.8090478695423461, 0.5418200946870069, 0.4134665965281431, 0.2140978432403998, 0.19095213045765386, 0.18306154655444504, 0.17674907943187795, 0.16885849552866913, 0.16465018411362442, 0.16465018411362442, 0.16570226196738558, 0.165176223040505, 0.1699105733824303, 0.9247764334560757, 0.135718043135192, 0.1109942135718043, 0.34350341925302474, 0.11467648605996844, 0.10889005786428195, 0.10310362966859547, 0.08837453971593898, 0.0873224618621778, 0.08574434508153603, 0.08153603366649131, 0.08206207259337191, 0.08206207259337191, 0.08153603366649131, 0.0825881115202525, 0.08311415044713309, 0.07890583903208838, 0.08153603366649131, 0.08890057864281957, 0.09153077327722252, 0.12361914781693846, 0.11204629142556549, 0.10889005786428195, 0.10625986322987901, 0.10625986322987901, 0.1067859021567596, 0.11046817464492373, 0.10836401893740137, 0.1167806417674908, 0.165176223040505, 0.14729089952656496, 0.1404523934771173, 0.13361388742766964, 0.13256180957390848, 0.1409784324039979, 0.1215149921094161, 0.1162546028406102, 0.10889005786428195, 0.10573382430299842, 0.10520778537611783, 0.10257759074171488, 0.10099947396107312, 0.09994739610731194, 0.09942135718043135, 0.10783798001052078, 0.12940557601262492, 0.11204629142556549, 0.10468174644923724, 0.1067859021567596, 0.10625986322987901, 0.10731194108364019, 0.10836401893740137, 0.10836401893740137, 0.10783798001052078, 0.10836401893740137, 0.10889005786428195, 0.10889005786428195, 0.10889005786428195, 0.11046817464492373, 0.11204629142556549, 0.11309836927932668, 0.1162546028406102, 0.12046291425565492, 0.12835349815886377, 0.14203051025775906, 0.15675960021041557, 0.16149395055234086, 0.16622830089426618, 0.17569700157811677, 0.19095213045765386, 0.20620725933719095, 0.22567069963177275, 0.30457653866386114, 0.46344029458179903], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M14.gap.json b/pfam_gap_rates/Peptidase_M14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..357cd26365d063fb77f00599b341de1d45ef0863
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M14.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M2.gap.json b/pfam_gap_rates/Peptidase_M2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08f2fd011fb9558ba3a39bedc6ccb8d6ffae1502
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M2.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M42.gap.json b/pfam_gap_rates/Peptidase_M42.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b29e75c65cda6ab4b36ef16774f3e1e60632c1f
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M42.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M43.gap.json b/pfam_gap_rates/Peptidase_M43.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..932475ff1f05bcccfcf2814801b754bb5188a07d
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M43.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M43", "n_seqs": 541, "length": 193, "gap_rates": [0.9131238447319778, 0.8761552680221811, 0.844731977818854, 0.8207024029574861, 0.800369685767098, 0.7763401109057301, 0.7523105360443623, 0.7319778188539742, 0.7153419593345656, 0.6487985212569316, 0.6284658040665434, 0.6266173752310537, 0.6266173752310537, 0.6266173752310537, 0.6266173752310537, 0.6266173752310537, 0.7874306839186691, 0.7005545286506469, 0.9463955637707948, 0.7024029574861368, 0.6765249537892791, 0.6876155268022182, 0.6857670979667283, 0.6728280961182994, 0.7097966728280961, 0.6802218114602587, 0.6487985212569316, 0.5027726432532348, 0.49907578558225507, 0.49168207024029575, 0.4898336414048059, 0.49168207024029575, 0.49353049907578556, 0.4898336414048059, 0.4898336414048059, 0.5970425138632163, 0.5489833641404805, 0.5083179297597042, 0.49353049907578556, 0.4898336414048059, 0.49168207024029575, 0.49907578558225507, 0.5009242144177449, 0.4805914972273567, 0.47504621072088726, 0.46395563770794823, 0.4602587800369686, 0.4602587800369686, 0.5489833641404805, 0.512014787430684, 0.45471349353049906, 0.4510166358595194, 0.4491682070240296, 0.5711645101663586, 0.9260628465804066, 0.9408502772643254, 0.7689463955637708, 0.47504621072088726, 0.4177449168207024, 0.38632162661737524, 0.28650646950092423, 0.25508317929759705, 0.18853974121996303, 0.14048059149722736, 0.09796672828096119, 0.04621072088724584, 0.027726432532347505, 0.0166358595194085, 0.0073937153419593345, 0.005545286506469501, 0.005545286506469501, 0.0036968576709796672, 0.0036968576709796672, 0.005545286506469501, 0.005545286506469501, 0.005545286506469501, 0.0073937153419593345, 0.005545286506469501, 0.005545286506469501, 0.005545286506469501, 0.005545286506469501, 0.0073937153419593345, 0.9463955637707948, 0.0036968576709796672, 0.012939001848428836, 0.0018484288354898336, 0.7615526802218114, 0.8133086876155268, 0.8465804066543438, 0.866913123844732, 0.8909426987060998, 0.8539741219963032, 0.833641404805915, 0.789279112754159, 0.6506469500924215, 0.0, 0.4011090573012939, 0.12199630314232902, 0.07763401109057301, 0.36968576709796674, 0.12199630314232902, 0.8391866913123844, 0.8650646950092421, 0.922365988909427, 0.9408502772643254, 0.9426987060998152, 0.9316081330868762, 0.8798521256931608, 0.8521256931608133, 0.8114602587800369, 0.0018484288354898336, 0.0018484288354898336, 0.0018484288354898336, 0.0, 0.0018484288354898336, 0.0018484288354898336, 0.0018484288354898336, 0.0018484288354898336, 0.0018484288354898336, 0.33271719038817005, 0.059149722735674676, 0.07578558225508318, 0.06469500924214418, 0.06099815157116451, 0.09057301293900184, 0.8576709796672828, 0.9186691312384473, 0.9371534195933456, 0.8909426987060998, 0.7523105360443623, 0.06284658040665435, 0.059149722735674676, 0.059149722735674676, 0.06284658040665435, 0.05730129390018484, 0.07393715341959335, 0.13863216266173753, 0.06839186691312385, 0.8059149722735675, 0.8576709796672828, 0.8835489833641405, 0.9075785582255084, 0.922365988909427, 0.9463955637707948, 0.9297597042513863, 0.9149722735674677, 0.8946395563770795, 0.8632162661737524, 0.8558225508317929, 0.7818853974121996, 0.03512014787430684, 0.051756007393715345, 0.04621072088724584, 0.04805914972273567, 0.04990757855822551, 0.9316081330868762, 0.053604436229205174, 0.9260628465804066, 0.8853974121996303, 0.06099815157116451, 0.7652495378927912, 0.944547134935305, 0.6173752310536045, 0.06099815157116451, 0.9426987060998152, 0.04436229205175601, 0.04251386321626617, 0.04251386321626617, 0.04251386321626617, 0.04251386321626617, 0.04436229205175601, 0.051756007393715345, 0.06099815157116451, 0.18299445471349354, 0.17005545286506468, 0.07578558225508318, 0.08133086876155268, 0.07948243992606285, 0.08317929759704251, 0.08502772643253234, 0.08502772643253234, 0.08872458410351201, 0.08872458410351201, 0.08872458410351201, 0.09057301293900184, 0.09426987060998152, 0.10166358595194085, 0.10166358595194085, 0.12199630314232902, 0.18853974121996303, 0.40850277264325324, 0.6247689463955638, 0.9482439926062847], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M50B.gap.json b/pfam_gap_rates/Peptidase_M50B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6646fda3348171162aa110c46bd0d65a21c71087
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M50B.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M50B", "n_seqs": 501, "length": 223, "gap_rates": [0.936127744510978, 0.626746506986028, 0.4471057884231537, 0.35528942115768464, 0.2994011976047904, 0.2774451097804391, 0.26746506986027946, 0.2554890219560878, 0.24750499001996007, 0.23952095808383234, 0.2275449101796407, 0.2215568862275449, 0.2155688622754491, 0.19760479041916168, 0.7624750499001997, 0.7864271457085829, 0.7784431137724551, 0.7544910179640718, 0.18163672654690619, 0.15568862275449102, 0.15169660678642716, 0.1497005988023952, 0.1317365269461078, 0.1217564870259481, 0.11177644710578842, 0.08782435129740519, 0.08183632734530938, 0.07584830339321358, 0.06786427145708583, 0.0658682634730539, 0.0658682634730539, 0.0658682634730539, 0.0658682634730539, 0.059880239520958084, 0.059880239520958084, 0.059880239520958084, 0.059880239520958084, 0.059880239520958084, 0.05588822355289421, 0.05588822355289421, 0.05788423153692615, 0.05788423153692615, 0.059880239520958084, 0.05788423153692615, 0.06187624750499002, 0.06387225548902195, 0.06387225548902195, 0.0658682634730539, 0.0658682634730539, 0.06387225548902195, 0.0658682634730539, 0.0658682634730539, 0.06986027944111776, 0.06786427145708583, 0.09580838323353294, 0.11976047904191617, 0.0718562874251497, 0.06387225548902195, 0.06387225548902195, 0.06387225548902195, 0.06387225548902195, 0.0718562874251497, 0.06387225548902195, 0.06187624750499002, 0.8542914171656687, 0.9401197604790419, 0.5608782435129741, 0.46506986027944114, 0.4530938123752495, 0.07584830339321358, 0.11177644710578842, 0.1277445109780439, 0.2435129740518962, 0.17365269461077845, 0.0658682634730539, 0.0658682634730539, 0.0658682634730539, 0.0658682634730539, 0.06786427145708583, 0.06986027944111776, 0.0718562874251497, 0.06387225548902195, 0.0658682634730539, 0.0658682634730539, 0.06387225548902195, 0.0658682634730539, 0.06786427145708583, 0.06786427145708583, 0.0658682634730539, 0.06187624750499002, 0.06387225548902195, 0.0658682634730539, 0.0658682634730539, 0.06986027944111776, 0.08383233532934131, 0.9481037924151696, 0.10978043912175649, 0.11976047904191617, 0.8862275449101796, 0.12375249500998003, 0.12974051896207583, 0.1317365269461078, 0.9041916167664671, 0.7285429141716567, 0.1437125748502994, 0.14770459081836326, 0.15568862275449102, 0.15768463073852296, 0.15568862275449102, 0.8323353293413174, 0.15568862275449102, 0.1596806387225549, 0.15768463073852296, 0.16367265469061876, 0.16766467065868262, 0.16966067864271456, 0.17564870259481039, 0.17764471057884232, 0.1936127744510978, 0.1996007984031936, 0.20359281437125748, 0.2055888223552894, 0.20958083832335328, 0.21157684630738524, 0.21157684630738524, 0.21157684630738524, 0.21357285429141717, 0.21357285429141717, 0.2155688622754491, 0.21357285429141717, 0.2155688622754491, 0.2155688622754491, 0.21756487025948104, 0.21956087824351297, 0.22355289421157684, 0.2275449101796407, 0.2315369261477046, 0.2315369261477046, 0.2315369261477046, 0.2315369261477046, 0.23552894211576847, 0.23552894211576847, 0.2375249500998004, 0.23952095808383234, 0.2435129740518962, 0.2435129740518962, 0.2714570858283433, 0.25149700598802394, 0.908183632734531, 0.908183632734531, 0.908183632734531, 0.2554890219560878, 0.2554890219560878, 0.25349301397205587, 0.25149700598802394, 0.25149700598802394, 0.249500998003992, 0.25149700598802394, 0.25349301397205587, 0.25349301397205587, 0.25349301397205587, 0.25349301397205587, 0.25948103792415167, 0.25948103792415167, 0.25948103792415167, 0.25748502994011974, 0.25748502994011974, 0.25748502994011974, 0.25948103792415167, 0.25948103792415167, 0.26147704590818366, 0.26147704590818366, 0.26147704590818366, 0.626746506986028, 0.25948103792415167, 0.2654690618762475, 0.2654690618762475, 0.2634730538922156, 0.7405189620758483, 0.780439121756487, 0.9421157684630739, 0.7524950099800399, 0.7325349301397206, 0.2894211576846307, 0.2714570858283433, 0.2694610778443114, 0.26746506986027946, 0.26746506986027946, 0.26746506986027946, 0.2694610778443114, 0.2694610778443114, 0.2694610778443114, 0.2694610778443114, 0.2694610778443114, 0.2694610778443114, 0.2694610778443114, 0.2714570858283433, 0.2714570858283433, 0.2714570858283433, 0.2714570858283433, 0.8542914171656687, 0.2714570858283433, 0.27345309381237526, 0.9281437125748503, 0.9241516966067864, 0.2754491017964072, 0.2754491017964072, 0.2754491017964072, 0.2754491017964072, 0.2754491017964072, 0.2754491017964072, 0.27345309381237526, 0.2754491017964072, 0.2774451097804391, 0.281437125748503, 0.281437125748503, 0.2874251497005988, 0.2934131736526946, 0.29740518962075846, 0.3073852295409182, 0.31736526946107785, 0.35528942115768464, 0.500998003992016], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M74.gap.json b/pfam_gap_rates/Peptidase_M74.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53c11cffd31dfce937a8c087d8e7f81987c9d5fb
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M74.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_Mx.gap.json b/pfam_gap_rates/Peptidase_Mx.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd527a5b46a995e71402f9dedd615935c71c3c95
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_Mx.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peripla_BP_2.gap.json b/pfam_gap_rates/Peripla_BP_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d4cda16fba97af0053576c69ed81d03484d0575
--- /dev/null
+++ b/pfam_gap_rates/Peripla_BP_2.gap.json
@@ -0,0 +1 @@
+{"family": "Peripla_BP_2", "n_seqs": 5000, "length": 286, "gap_rates": [0.461, 0.3864, 0.3644, 0.3508, 0.3316, 0.3202, 0.3086, 0.2954, 0.2784, 0.2656, 0.2566, 0.2456, 0.2404, 0.2394, 0.2306, 0.26, 0.2438, 0.222, 0.2192, 0.305, 0.265, 0.2058, 0.2028, 0.1986, 0.1958, 0.193, 0.191, 0.1874, 0.1848, 0.1814, 0.1776, 0.176, 0.1738, 0.17, 0.2026, 0.3742, 0.4514, 0.5022, 0.5822, 0.6042, 0.7662, 0.8552, 0.892, 0.9208, 0.947, 0.9384, 0.906, 0.8734, 0.8148, 0.691, 0.1504, 0.1398, 0.1208, 0.1098, 0.1012, 0.0932, 0.0862, 0.0738, 0.0682, 0.0598, 0.0484, 0.0446, 0.0362, 0.95, 0.0292, 0.0272, 0.0248, 0.024, 0.0234, 0.0232, 0.0226, 0.0226, 0.0224, 0.0224, 0.0222, 0.022, 0.0234, 0.0246, 0.0242, 0.0258, 0.0236, 0.8044, 0.8846, 0.9386, 0.8428, 0.7216, 0.5614, 0.345, 0.1714, 0.0614, 0.0334, 0.0226, 0.0216, 0.0208, 0.0206, 0.0198, 0.0194, 0.0194, 0.0194, 0.0198, 0.0192, 0.0192, 0.0192, 0.0184, 0.0186, 0.0186, 0.019, 0.0198, 0.0884, 0.2208, 0.3976, 0.7078, 0.856, 0.9116, 0.936, 0.9418, 0.9276, 0.892, 0.8142, 0.6548, 0.0338, 0.0196, 0.0164, 0.0146, 0.0142, 0.0142, 0.0136, 0.0138, 0.0132, 0.0132, 0.0132, 0.014, 0.014, 0.0142, 0.0146, 0.0152, 0.0184, 0.0206, 0.0242, 0.0208, 0.0178, 0.0168, 0.0164, 0.0164, 0.0158, 0.0168, 0.0162, 0.0164, 0.0168, 0.0164, 0.016, 0.0162, 0.018, 0.0202, 0.0204, 0.0214, 0.022, 0.0204, 0.0192, 0.0186, 0.0206, 0.7792, 0.9076, 0.611, 0.2792, 0.1472, 0.0664, 0.0342, 0.023, 0.0206, 0.0194, 0.019, 0.0238, 0.0904, 0.0596, 0.0418, 0.0498, 0.9116, 0.9396, 0.8572, 0.284, 0.1878, 0.098, 0.0372, 0.0218, 0.0222, 0.0268, 0.0248, 0.026, 0.0228, 0.0204, 0.0214, 0.022, 0.0204, 0.0196, 0.0194, 0.0178, 0.0462, 0.9226, 0.0184, 0.017, 0.0172, 0.0176, 0.0188, 0.0192, 0.902, 0.062, 0.0496, 0.0498, 0.1792, 0.4224, 0.6958, 0.8576, 0.924, 0.7698, 0.5986, 0.0462, 0.03, 0.0252, 0.0236, 0.0262, 0.0238, 0.0232, 0.0232, 0.0236, 0.0238, 0.0236, 0.024, 0.0248, 0.0256, 0.9412, 0.8818, 0.028, 0.0276, 0.0278, 0.0274, 0.0288, 0.029, 0.03, 0.0336, 0.0346, 0.0374, 0.0398, 0.7444, 0.887, 0.9298, 0.9476, 0.9402, 0.904, 0.8514, 0.6928, 0.57, 0.4506, 0.3838, 0.2972, 0.21, 0.1396, 0.0992, 0.0854, 0.0842, 0.0822, 0.0836, 0.0842, 0.0888, 0.0938, 0.0986, 0.1138, 0.1058, 0.1012, 0.1068, 0.1098, 0.1112, 0.114, 0.1182, 0.1208, 0.1226, 0.1256, 0.1278, 0.1352, 0.1508, 0.1798, 0.229, 0.2946, 0.433, 0.6396, 0.8476], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhageMin_Tail.gap.json b/pfam_gap_rates/PhageMin_Tail.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57fe933ef463162428aee9058b8a47ae2b7133df
--- /dev/null
+++ b/pfam_gap_rates/PhageMin_Tail.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_int_SAM_5.gap.json b/pfam_gap_rates/Phage_int_SAM_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3973e02d41bba8cafcf3eba957e3e193e20e5848
--- /dev/null
+++ b/pfam_gap_rates/Phage_int_SAM_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_tail_2.gap.json b/pfam_gap_rates/Phage_tail_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77b423ee376e7e8487dd31b7216bfab7af6dd4ce
--- /dev/null
+++ b/pfam_gap_rates/Phage_tail_2.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_tail_2", "n_seqs": 216, "length": 151, "gap_rates": [0.5694444444444444, 0.3611111111111111, 0.19444444444444445, 0.16203703703703703, 0.16203703703703703, 0.14351851851851852, 0.12962962962962962, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.1111111111111111, 0.1111111111111111, 0.10185185185185185, 0.08796296296296297, 0.08333333333333333, 0.09259259259259259, 0.2037037037037037, 0.5370370370370371, 0.8055555555555556, 0.7592592592592593, 0.1712962962962963, 0.08796296296296297, 0.06944444444444445, 0.06481481481481481, 0.046296296296296294, 0.041666666666666664, 0.037037037037037035, 0.032407407407407406, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.009259259259259259, 0.009259259259259259, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.9166666666666666, 0.9166666666666666, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.2222222222222222, 0.4722222222222222, 0.2175925925925926, 0.21296296296296297, 0.2037037037037037, 0.2037037037037037, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.19907407407407407, 0.19907407407407407, 0.018518518518518517, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.6574074074074074, 0.07407407407407407, 0.004629629629629629, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004629629629629629, 0.004629629629629629, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7638888888888888, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.6435185185185185, 0.8611111111111112, 0.9398148148148148, 0.7268518518518519, 0.6342592592592593, 0.018518518518518517, 0.9398148148148148, 0.9351851851851852, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.004629629629629629, 0.009259259259259259, 0.013888888888888888, 0.9027777777777778, 0.8379629629629629, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004629629629629629, 0.8009259259259259, 0.8148148148148148, 0.7962962962962963, 0.004629629629629629, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009259259259259259, 0.013888888888888888, 0.004629629629629629, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004629629629629629, 0.004629629629629629, 0.009259259259259259, 0.013888888888888888, 0.032407407407407406, 0.05555555555555555, 0.07407407407407407, 0.11574074074074074, 0.2222222222222222, 0.6574074074074074], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_tail_S.gap.json b/pfam_gap_rates/Phage_tail_S.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..302e496454c26bc78975655097d7cb99067049c8
--- /dev/null
+++ b/pfam_gap_rates/Phage_tail_S.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_tail_S", "n_seqs": 216, "length": 219, "gap_rates": [0.7083333333333334, 0.6296296296296297, 0.5601851851851852, 0.49074074074074076, 0.42592592592592593, 0.38425925925925924, 0.35185185185185186, 0.3101851851851852, 0.2824074074074074, 0.27314814814814814, 0.2824074074074074, 0.26851851851851855, 0.26851851851851855, 0.25925925925925924, 0.24074074074074073, 0.8101851851851852, 0.7592592592592593, 0.2175925925925926, 0.2175925925925926, 0.21296296296296297, 0.19907407407407407, 0.18518518518518517, 0.18518518518518517, 0.16666666666666666, 0.16666666666666666, 0.1574074074074074, 0.14814814814814814, 0.13425925925925927, 0.13425925925925927, 0.13425925925925927, 0.13425925925925927, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.125, 0.125, 0.12037037037037036, 0.18981481481481483, 0.12037037037037036, 0.24537037037037038, 0.22685185185185186, 0.17592592592592593, 0.12037037037037036, 0.09722222222222222, 0.14351851851851852, 0.09722222222222222, 0.10185185185185185, 0.09259259259259259, 0.9444444444444444, 0.9490740740740741, 0.9444444444444444, 0.9120370370370371, 0.44907407407407407, 0.375, 0.375, 0.22685185185185186, 0.17592592592592593, 0.18055555555555555, 0.18055555555555555, 0.5879629629629629, 0.5509259259259259, 0.4675925925925926, 0.37962962962962965, 0.3194444444444444, 0.12037037037037036, 0.1527777777777778, 0.3888888888888889, 0.19444444444444445, 0.07407407407407407, 0.06481481481481481, 0.06481481481481481, 0.0787037037037037, 0.0787037037037037, 0.3148148148148148, 0.09722222222222222, 0.08796296296296297, 0.08333333333333333, 0.0787037037037037, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08796296296296297, 0.09259259259259259, 0.7037037037037037, 0.9212962962962963, 0.7361111111111112, 0.6898148148148148, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.08796296296296297, 0.7962962962962963, 0.8009259259259259, 0.8564814814814815, 0.8703703703703703, 0.8842592592592593, 0.8935185185185185, 0.9490740740740741, 0.9120370370370371, 0.8888888888888888, 0.875, 0.8611111111111112, 0.8333333333333334, 0.8009259259259259, 0.7916666666666666, 0.4074074074074074, 0.47685185185185186, 0.4074074074074074, 0.7546296296296297, 0.7870370370370371, 0.8101851851851852, 0.8379629629629629, 0.8472222222222222, 0.8657407407407407, 0.8842592592592593, 0.9212962962962963, 0.9398148148148148, 0.9444444444444444, 0.9490740740740741, 0.9444444444444444, 0.9398148148148148, 0.9166666666666666, 0.8796296296296297, 0.8564814814814815, 0.8425925925925926, 0.8148148148148148, 0.8009259259259259, 0.7592592592592593, 0.7453703703703703, 0.2222222222222222, 0.3101851851851852, 0.5370370370370371, 0.49537037037037035, 0.8981481481481481, 0.9212962962962963, 0.8842592592592593, 0.4861111111111111, 0.4722222222222222, 0.4537037037037037, 0.4305555555555556, 0.24537037037037038, 0.24537037037037038, 0.22685185185185186, 0.14351851851851852, 0.8796296296296297, 0.9074074074074074, 0.9074074074074074, 0.9120370370370371, 0.9120370370370371, 0.9259259259259259, 0.9351851851851852, 0.9444444444444444, 0.9490740740740741, 0.9444444444444444, 0.9444444444444444, 0.9351851851851852, 0.9212962962962963, 0.9120370370370371, 0.9120370370370371, 0.9074074074074074, 0.8888888888888888, 0.8796296296296297, 0.125, 0.125, 0.125, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.9212962962962963, 0.9398148148148148, 0.9444444444444444, 0.9398148148148148, 0.9259259259259259, 0.9166666666666666, 0.1574074074074074, 0.16666666666666666, 0.18055555555555555, 0.19444444444444445, 0.18981481481481483, 0.19444444444444445, 0.2037037037037037, 0.21296296296296297, 0.2175925925925926, 0.2222222222222222, 0.2222222222222222, 0.22685185185185186, 0.23148148148148148, 0.2361111111111111, 0.2777777777777778, 0.32407407407407407, 0.3888888888888889, 0.4675925925925926, 0.9074074074074074], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phasin.gap.json b/pfam_gap_rates/Phasin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf308a1329548834a3e7a29fd2fcc36ecdbc2f32
--- /dev/null
+++ b/pfam_gap_rates/Phasin.gap.json
@@ -0,0 +1 @@
+{"family": "Phasin", "n_seqs": 224, "length": 131, "gap_rates": [0.9017857142857143, 0.8392857142857143, 0.7232142857142857, 0.6875, 0.6651785714285714, 0.6473214285714286, 0.625, 0.6071428571428571, 0.6026785714285714, 0.5758928571428571, 0.5625, 0.5401785714285714, 0.5133928571428571, 0.5044642857142857, 0.4419642857142857, 0.4330357142857143, 0.4330357142857143, 0.4330357142857143, 0.42410714285714285, 0.42410714285714285, 0.41964285714285715, 0.41964285714285715, 0.41517857142857145, 0.4107142857142857, 0.4107142857142857, 0.40625, 0.39732142857142855, 0.39732142857142855, 0.39285714285714285, 0.38839285714285715, 0.38839285714285715, 0.38392857142857145, 0.38392857142857145, 0.36607142857142855, 0.35267857142857145, 0.3482142857142857, 0.3392857142857143, 0.3392857142857143, 0.3392857142857143, 0.3482142857142857, 0.34375, 0.3392857142857143, 0.33482142857142855, 0.30357142857142855, 0.29910714285714285, 0.28125, 0.25, 0.19196428571428573, 0.14732142857142858, 0.16071428571428573, 0.14732142857142858, 0.13839285714285715, 0.13392857142857142, 0.11607142857142858, 0.11160714285714286, 0.11160714285714286, 0.11160714285714286, 0.11607142857142858, 0.11607142857142858, 0.12946428571428573, 0.125, 0.11160714285714286, 0.6919642857142857, 0.9107142857142857, 0.9196428571428571, 0.9196428571428571, 0.9196428571428571, 0.6919642857142857, 0.6919642857142857, 0.14285714285714285, 0.12946428571428573, 0.17410714285714285, 0.22321428571428573, 0.20535714285714285, 0.21875, 0.20089285714285715, 0.14732142857142858, 0.15625, 0.13839285714285715, 0.14285714285714285, 0.11160714285714286, 0.11607142857142858, 0.125, 0.13392857142857142, 0.14285714285714285, 0.14285714285714285, 0.13392857142857142, 0.11160714285714286, 0.10714285714285714, 0.11160714285714286, 0.11160714285714286, 0.11607142857142858, 0.13392857142857142, 0.13839285714285715, 0.14285714285714285, 0.15625, 0.15625, 0.15178571428571427, 0.16071428571428573, 0.15625, 0.15625, 0.16071428571428573, 0.16517857142857142, 0.16517857142857142, 0.16517857142857142, 0.16964285714285715, 0.17410714285714285, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.18303571428571427, 0.18303571428571427, 0.18303571428571427, 0.18303571428571427, 0.18303571428571427, 0.18303571428571427, 0.18303571428571427, 0.1875, 0.19196428571428573, 0.19642857142857142, 0.20089285714285715, 0.20535714285714285, 0.20982142857142858, 0.22767857142857142, 0.24553571428571427, 0.26785714285714285, 0.3392857142857143, 0.4955357142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phasin_2.gap.json b/pfam_gap_rates/Phasin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..039bc88b08475cf219d68cd24aa446b121acd2cf
--- /dev/null
+++ b/pfam_gap_rates/Phasin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Phasin_2", "n_seqs": 640, "length": 103, "gap_rates": [0.6890625, 0.4734375, 0.35625, 0.290625, 0.23125, 0.1890625, 0.159375, 0.128125, 0.1140625, 0.1, 0.0875, 0.0796875, 0.06875, 0.065625, 0.065625, 0.0640625, 0.0609375, 0.053125, 0.05, 0.0453125, 0.04375, 0.0390625, 0.0375, 0.034375, 0.0296875, 0.028125, 0.0234375, 0.0140625, 0.0140625, 0.009375, 0.0078125, 0.0046875, 0.003125, 0.003125, 0.003125, 0.003125, 0.003125, 0.0015625, 0.0015625, 0.003125, 0.003125, 0.003125, 0.003125, 0.00625, 0.00625, 0.00625, 0.0046875, 0.0015625, 0.0046875, 0.0046875, 0.0046875, 0.00625, 0.00625, 0.0046875, 0.0171875, 0.9140625, 0.9171875, 0.853125, 0.00625, 0.003125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0015625, 0.0, 0.0015625, 0.003125, 0.0015625, 0.0015625, 0.003125, 0.0, 0.0, 0.0015625, 0.0015625, 0.0015625, 0.0, 0.0, 0.0015625, 0.003125, 0.003125, 0.003125, 0.003125, 0.0046875, 0.009375, 0.0125, 0.015625, 0.0265625, 0.0375, 0.0453125, 0.059375, 0.065625, 0.071875, 0.0875, 0.109375, 0.1296875, 0.184375, 0.3125, 0.5046875, 0.73125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phe_hydrox_dim.gap.json b/pfam_gap_rates/Phe_hydrox_dim.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2462962c38d982c4650f9fe045714e5861b51040
--- /dev/null
+++ b/pfam_gap_rates/Phe_hydrox_dim.gap.json
@@ -0,0 +1 @@
+{"family": "Phe_hydrox_dim", "n_seqs": 471, "length": 235, "gap_rates": [0.08492569002123142, 0.04670912951167728, 0.036093418259023353, 0.03184713375796178, 0.029723991507430998, 0.03397027600849257, 0.027600849256900213, 0.027600849256900213, 0.027600849256900213, 0.029723991507430998, 0.03184713375796178, 0.025477707006369428, 0.02335456475583864, 0.02335456475583864, 0.1932059447983015, 0.6242038216560509, 0.7367303609341825, 0.7834394904458599, 0.8131634819532909, 0.8535031847133758, 0.8874734607218684, 0.9002123142250531, 0.9065817409766455, 0.9150743099787686, 0.9171974522292994, 0.9278131634819533, 0.9447983014861996, 0.921443736730361, 0.9150743099787686, 0.9129511677282378, 0.9023354564755839, 0.8959660297239915, 0.8641188959660298, 0.8386411889596603, 0.8046709129511678, 0.7579617834394905, 0.70276008492569, 0.4012738853503185, 0.14861995753715498, 0.14225053078556263, 0.12951167728237792, 0.12738853503184713, 0.1337579617834395, 0.04883227176220807, 0.040339702760084924, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PhosphMutase.gap.json b/pfam_gap_rates/PhosphMutase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..256ace8e4d84e03fa93bbb62fe710acc265f68d5
--- /dev/null
+++ b/pfam_gap_rates/PhosphMutase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phospholip_A2_3.gap.json b/pfam_gap_rates/Phospholip_A2_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fb4e143743d8f83eefdf870dfffd16f01ed1ec8
--- /dev/null
+++ b/pfam_gap_rates/Phospholip_A2_3.gap.json
@@ -0,0 +1 @@
+{"family": "Phospholip_A2_3", "n_seqs": 118, "length": 123, "gap_rates": [0.5338983050847458, 0.4661016949152542, 0.4576271186440678, 0.4576271186440678, 0.4491525423728814, 0.4491525423728814, 0.4491525423728814, 0.3813559322033898, 0.3220338983050847, 0.3135593220338983, 0.3050847457627119, 0.2966101694915254, 0.2796610169491525, 0.2796610169491525, 0.2796610169491525, 0.2796610169491525, 0.2796610169491525, 0.2796610169491525, 0.2796610169491525, 0.2796610169491525, 0.6864406779661016, 0.2711864406779661, 0.847457627118644, 0.8389830508474576, 0.23728813559322035, 0.23728813559322035, 0.211864406779661, 0.211864406779661, 0.211864406779661, 0.19491525423728814, 0.16101694915254236, 0.11016949152542373, 0.06779661016949153, 0.05084745762711865, 0.03389830508474576, 0.03389830508474576, 0.0423728813559322, 0.9067796610169492, 0.0423728813559322, 0.03389830508474576, 0.03389830508474576, 0.01694915254237288, 0.01694915254237288, 0.025423728813559324, 0.01694915254237288, 0.01694915254237288, 0.8813559322033898, 0.8728813559322034, 0.03389830508474576, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.025423728813559324, 0.05084745762711865, 0.059322033898305086, 0.07627118644067797, 0.0847457627118644, 0.05084745762711865, 0.0847457627118644, 0.11016949152542373, 0.06779661016949153, 0.2711864406779661, 0.06779661016949153, 0.0423728813559322, 0.05084745762711865, 0.0423728813559322, 0.03389830508474576, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.0423728813559322, 0.940677966101695, 0.9491525423728814, 0.940677966101695, 0.9322033898305084, 0.3728813559322034, 0.3474576271186441, 0.8389830508474576, 0.864406779661017, 0.7796610169491526, 0.11864406779661017, 0.11864406779661017, 0.09322033898305085, 0.03389830508474576, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.059322033898305086, 0.059322033898305086, 0.06779661016949153, 0.1016949152542373, 0.16101694915254236, 0.2457627118644068], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PilZ.gap.json b/pfam_gap_rates/PilZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58ff41535f7be74a91239fabc2c3ef430c1b2108
--- /dev/null
+++ b/pfam_gap_rates/PilZ.gap.json
@@ -0,0 +1 @@
+{"family": "PilZ", "n_seqs": 3327, "length": 131, "gap_rates": [0.5776976254884281, 0.36459272617974153, 0.23294259092275324, 0.2200180342651037, 0.21009918845807032, 0.1971746318004208, 0.18425007514277125, 0.8779681394649834, 0.943492636008416, 0.9338743612864443, 0.8623384430417794, 0.6798917944093779, 0.6777877968139465, 0.19296663660955815, 0.18394950405770966, 0.1761346558461076, 0.16862037871956717, 0.15749924857228734, 0.1478809738503156, 0.13074842200180342, 0.11481815449353772, 0.11662158100390742, 0.09738503155996393, 0.0862639014126841, 0.07814848211602043, 0.07003306281935678, 0.06281935677787796, 0.05590622182146077, 0.7742711151187256, 0.8605350165314096, 0.9185452359483017, 0.9368800721370604, 0.8914938382927562, 0.8199579200480914, 0.638112413585813, 0.042981665163811245, 0.032461677186654644, 0.021340547039374814, 0.9492034866245868, 0.025849113315299068, 0.01923654944394349, 0.005410279531109108, 0.004508566275924256, 0.0036068530207394047, 0.0033062819356777877, 0.0018034265103697023, 0.0015028554253080854, 0.0012022843402464682, 0.00030057108506161706, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8256687706642621, 0.9308686504358281, 0.8872858431018936, 0.6708746618575293, 0.5981364592726179, 0.020739404869251576, 0.007514277126540427, 0.003907424105801022, 0.003907424105801022, 0.0021039975954313195, 0.0021039975954313195, 0.0069131349564171924, 0.00510970844604749, 0.0024045686804929365, 0.003005710850616171, 0.0024045686804929365, 0.003005710850616171, 0.0033062819356777877, 0.003907424105801022, 0.7270814547640517, 0.8782687105500451, 0.9227532311391644, 0.7968139464983469, 0.4715960324616772, 0.31229335737902014, 0.15569582206191765, 0.1355575593627893, 0.10580102194168921, 0.032461677186654644, 0.020739404869251576, 0.020138262699128343, 0.018635407273820258, 0.018034265103697024, 0.005710850616170725, 0.005410279531109108, 0.005710850616170725, 0.005410279531109108, 0.005710850616170725, 0.006011421701232342, 0.0063119927862939585, 0.007213706041478809, 0.008415990381725278, 0.011121130147279832, 0.2762248271716261, 0.29185452359483016, 0.3134956417192666, 0.3309287646528404, 0.6889089269612263, 0.8337841899609257, 0.9239555154794109, 0.7793808235647731, 0.5383228133453561, 0.046889089269612265, 0.04538623384430418, 0.9365795010519988, 0.0369702434625789, 0.0387736699729486, 0.04508566275924256, 0.07243763149984972, 0.8881875563570785, 0.12173128944995491, 0.13826269912834385, 0.17373008716561467, 0.19627291854523596, 0.2236248872858431, 0.2545837090471897, 0.2840396753832281, 0.3261196272918545, 0.3309287646528404, 0.34265103697024346, 0.3534715960324617, 0.3871355575593628, 0.41839495040577096, 0.4541629095281034, 0.5139765554553652, 0.675082657048392, 0.9158400961827472], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Piwi.gap.json b/pfam_gap_rates/Piwi.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15316a98b5e1c18cb9913ee7a61d21492ceba7ae
--- /dev/null
+++ b/pfam_gap_rates/Piwi.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Plectin.gap.json b/pfam_gap_rates/Plectin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..84deda0b3118dc51d9eb8c0c9545a8ec5298a128
--- /dev/null
+++ b/pfam_gap_rates/Plectin.gap.json
@@ -0,0 +1 @@
+{"family": "Plectin", "n_seqs": 1109, "length": 41, "gap_rates": [0.42741208295761945, 0.16321009918845808, 0.13345356176735798, 0.12533814247069433, 0.1127141568981064, 0.1018935978358882, 0.09738503155996393, 0.08926961226330027, 0.0775473399458972, 0.07123534715960325, 0.05410279531109107, 0.009918845807033363, 0.004508566275924256, 0.002705139765554554, 0.002705139765554554, 0.0009017132551848512, 0.0009017132551848512, 0.0009017132551848512, 0.0009017132551848512, 0.0009017132551848512, 0.0009017132551848512, 0.0018034265103697023, 0.0018034265103697023, 0.002705139765554554, 0.002705139765554554, 0.0036068530207394047, 0.0036068530207394047, 0.004508566275924256, 0.0063119927862939585, 0.0063119927862939585, 0.007213706041478809, 0.009017132551848512, 0.012623985572587917, 0.030658250676284943, 0.05229936880072137, 0.0739404869251578, 0.09107303877366997, 0.11812443642921551, 0.14517583408476104, 0.1659152389540126, 0.4003606853020739], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Polysacc_synt_4.gap.json b/pfam_gap_rates/Polysacc_synt_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e8411c4bb7f1f36d1eaf45ec86144cd1c64ebb0
--- /dev/null
+++ b/pfam_gap_rates/Polysacc_synt_4.gap.json
@@ -0,0 +1 @@
+{"family": "Polysacc_synt_4", "n_seqs": 459, "length": 197, "gap_rates": [0.6361655773420479, 0.21350762527233116, 0.20261437908496732, 0.19607843137254902, 0.18736383442265794, 0.1830065359477124, 0.1830065359477124, 0.18082788671023964, 0.1786492374727669, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17429193899782136, 0.17429193899782136, 0.4793028322440087, 0.1721132897603486, 0.16993464052287582, 0.16993464052287582, 0.16775599128540306, 0.16775599128540306, 0.5882352941176471, 0.5904139433551199, 0.5904139433551199, 0.5882352941176471, 0.5860566448801743, 0.5860566448801743, 0.5860566448801743, 0.5838779956427015, 0.5838779956427015, 0.5816993464052288, 0.579520697167756, 0.1655773420479303, 0.15468409586056645, 0.15468409586056645, 0.5555555555555556, 0.15250544662309368, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.14814814814814814, 0.15468409586056645, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1503267973856209, 0.14814814814814814, 0.1503267973856209, 0.15250544662309368, 0.1503267973856209, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14596949891067537, 0.14596949891067537, 0.14596949891067537, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.14814814814814814, 0.32679738562091504, 0.47276688453159044, 0.45751633986928103, 0.4553376906318083, 0.5315904139433552, 0.5098039215686274, 0.5098039215686274, 0.16993464052287582, 0.16993464052287582, 0.17429193899782136, 0.1721132897603486, 0.1721132897603486, 0.16993464052287582, 0.17429193899782136, 0.1721132897603486, 0.16993464052287582, 0.1721132897603486, 0.1721132897603486, 0.1721132897603486, 0.17429193899782136, 0.17647058823529413, 0.1721132897603486, 0.17429193899782136, 0.8605664488017429, 0.8496732026143791, 0.6797385620915033, 0.6056644880174292, 0.599128540305011, 0.6013071895424836, 0.599128540305011, 0.6034858387799564, 0.6078431372549019, 0.6122004357298475, 0.8736383442265795, 0.9455337690631809, 0.8344226579520697, 0.6122004357298475, 0.6100217864923747, 0.6056644880174292, 0.6034858387799564, 0.6013071895424836, 0.6013071895424836, 0.5969498910675382, 0.5925925925925926, 0.5882352941176471, 0.5882352941176471, 0.5860566448801743, 0.5904139433551199, 0.5838779956427015, 0.579520697167756, 0.579520697167756, 0.579520697167756, 0.5773420479302832, 0.5773420479302832, 0.5773420479302832, 0.5708061002178649, 0.1437908496732026, 0.14161220043572983, 0.13507625272331156, 0.579520697167756, 0.579520697167756, 0.579520697167756, 0.579520697167756, 0.579520697167756, 0.579520697167756, 0.579520697167756, 0.579520697167756, 0.11982570806100218, 0.10239651416122005, 0.10893246187363835, 0.10893246187363835, 0.1111111111111111, 0.11328976034858387, 0.11328976034858387, 0.1568627450980392, 0.10893246187363835, 0.10893246187363835, 0.09586056644880174, 0.09368191721132897, 0.09586056644880174, 0.5729847494553377, 0.09586056644880174, 0.09586056644880174, 0.09586056644880174, 0.09586056644880174, 0.09586056644880174, 0.09586056644880174, 0.09368191721132897, 0.09368191721132897, 0.09586056644880174, 0.09586056644880174, 0.09803921568627451, 0.1111111111111111, 0.1328976034858388, 0.1394335511982571, 0.5054466230936819, 0.46405228758169936, 0.37254901960784315, 0.20915032679738563, 0.11328976034858387, 0.09803921568627451, 0.08932461873638345, 0.08932461873638345, 0.10239651416122005, 0.10457516339869281, 0.10457516339869281, 0.10239651416122005, 0.10457516339869281, 0.5642701525054467, 0.5642701525054467, 0.5642701525054467, 0.5664488017429193, 0.5664488017429193, 0.5686274509803921, 0.5686274509803921, 0.5686274509803921, 0.5686274509803921, 0.5686274509803921, 0.11546840958605664, 0.11546840958605664, 0.11546840958605664, 0.11982570806100218, 0.11982570806100218, 0.11982570806100218, 0.11982570806100218, 0.12200435729847495, 0.13071895424836602, 0.13507625272331156, 0.13725490196078433, 0.1394335511982571, 0.14596949891067537, 0.8082788671023965, 0.7995642701525054, 0.4226579520697168, 0.5838779956427015, 0.5969498910675382, 0.6535947712418301], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PqqD.gap.json b/pfam_gap_rates/PqqD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d708720a88a301f87c5b7a927e8ed269d6289d3f
--- /dev/null
+++ b/pfam_gap_rates/PqqD.gap.json
@@ -0,0 +1 @@
+{"family": "PqqD", "n_seqs": 911, "length": 75, "gap_rates": [0.6981339187705817, 0.4961580680570801, 0.3589462129527991, 0.28210757409440174, 0.265642151481888, 0.2491767288693743, 0.2239297475301866, 0.21405049396267836, 0.18221734357848518, 0.8375411635565313, 0.8529088913282108, 0.8551042810098792, 0.8408342480790341, 0.8320526893523601, 0.33260153677277715, 0.29088913282107576, 0.10098792535675083, 0.07025246981339188, 0.014270032930845226, 0.009879253567508232, 0.006586169045005488, 0.006586169045005488, 0.006586169045005488, 0.005488474204171241, 0.0043907793633369925, 0.0021953896816684962, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.9264544456641054, 0.0043907793633369925, 0.0021953896816684962, 0.14709110867178923, 0.009879253567508232, 0.003293084522502744, 0.9012074643249177, 0.0, 0.0, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.0021953896816684962, 0.0021953896816684962, 0.0021953896816684962, 0.8924259055982436, 0.0043907793633369925, 0.006586169045005488, 0.014270032930845226, 0.07574094401756312, 0.09769484083424808, 0.09549945115257959, 0.015367727771679473, 0.01646542261251372, 0.006586169045005488, 0.006586169045005488, 0.006586169045005488, 0.005488474204171241, 0.006586169045005488, 0.008781558726673985, 0.010976948408342482, 0.013172338090010977, 0.021953896816684963, 0.03951701427003293, 0.04500548847420417, 0.05378704720087816, 0.07025246981339188, 0.09549945115257959, 0.12184412733260154, 0.21405049396267836], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PrcB_C.gap.json b/pfam_gap_rates/PrcB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04687c9baf9d6882f6a0c8c1df865bd2dcd9f93f
--- /dev/null
+++ b/pfam_gap_rates/PrcB_C.gap.json
@@ -0,0 +1 @@
+{"family": "PrcB_C", "n_seqs": 234, "length": 65, "gap_rates": [0.4658119658119658, 0.17094017094017094, 0.05982905982905983, 0.03418803418803419, 0.01282051282051282, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004273504273504274, 0.004273504273504274, 0.7008547008547008, 0.905982905982906, 0.9444444444444444, 0.9316239316239316, 0.8162393162393162, 0.6666666666666666, 0.004273504273504274, 0.008547008547008548, 0.004273504273504274, 0.0, 0.9487179487179487, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004273504273504274, 0.004273504273504274, 0.2905982905982906, 0.28205128205128205, 0.0, 0.008547008547008548, 0.09829059829059829, 0.021367521367521368, 0.008547008547008548, 0.008547008547008548, 0.004273504273504274, 0.004273504273504274, 0.008547008547008548, 0.01282051282051282, 0.004273504273504274, 0.004273504273504274, 0.01282051282051282, 0.029914529914529916, 0.029914529914529916, 0.042735042735042736, 0.042735042735042736, 0.04700854700854701, 0.05982905982905983, 0.0811965811965812, 0.1452991452991453, 0.5811965811965812], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Prefoldin_2.gap.json b/pfam_gap_rates/Prefoldin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..59a00cba452764fe18f758ee45faeb50bde17d97
--- /dev/null
+++ b/pfam_gap_rates/Prefoldin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Prefoldin_2", "n_seqs": 1331, "length": 107, "gap_rates": [0.5274229902329076, 0.34485349361382417, 0.2554470323065364, 0.21487603305785125, 0.17129977460555973, 0.14199849737039819, 0.1322314049586777, 0.12246431254695718, 0.1179564237415477, 0.10969196093163035, 0.10593538692712247, 0.09767092411720511, 0.08940646130728776, 0.08414725770097671, 0.07738542449286251, 0.07137490608564989, 0.06611570247933884, 0.061607813673929375, 0.05709992486851991, 0.05334335086401202, 0.05108940646130729, 0.049586776859504134, 0.04808414725770098, 0.04432757325319309, 0.042073628850488355, 0.037565740045078885, 0.035311795642374154, 0.03606311044327573, 0.033809166040571, 0.03305785123966942, 0.030803906836964687, 0.029301277235161533, 0.027047332832456798, 0.0202854996243426, 0.018782870022539443, 0.01728024042073629, 0.015026296018031555, 0.013523666416228399, 0.013523666416228399, 0.014274981217129978, 0.013523666416228399, 0.013523666416228399, 0.011269722013523666, 0.010518407212622089, 0.9421487603305785, 0.9113448534936138, 0.08189331329827197, 0.019534184823441023, 0.012772351615326822, 0.009767092411720512, 0.010518407212622089, 0.007513148009015778, 0.0067618332081141996, 0.006010518407212622, 0.004507888805409466, 0.008264462809917356, 0.009015777610818933, 0.009015777610818933, 0.009015777610818933, 0.009015777610818933, 0.009015777610818933, 0.010518407212622089, 0.009767092411720512, 0.009767092411720512, 0.009767092411720512, 0.009767092411720512, 0.009767092411720512, 0.010518407212622089, 0.012772351615326822, 0.012021036814425245, 0.010518407212622089, 0.011269722013523666, 0.012021036814425245, 0.015026296018031555, 0.015777610818933134, 0.018782870022539443, 0.0202854996243426, 0.022539444027047332, 0.02404207362885049, 0.027047332832456798, 0.032306536438767845, 0.03305785123966942, 0.033809166040571, 0.03606311044327573, 0.04132231404958678, 0.045078888054094664, 0.04808414725770098, 0.049586776859504134, 0.05033809166040571, 0.051840721262208865, 0.05334335086401202, 0.056348610067618335, 0.05559729526671676, 0.058602554470323066, 0.061607813673929375, 0.06235912847483095, 0.06461307287753569, 0.07137490608564989, 0.09015777610818933, 0.10217881292261458, 0.12096168294515403, 0.13899323816679188, 0.1615326821938392, 0.19459053343350863, 0.23065364387678436, 0.30879038317054847, 0.49135987978963186], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pribosyltran.gap.json b/pfam_gap_rates/Pribosyltran.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3693d2049eaa2c740d157573b1c6fa897baaa491
--- /dev/null
+++ b/pfam_gap_rates/Pribosyltran.gap.json
@@ -0,0 +1 @@
+{"family": "Pribosyltran", "n_seqs": 5000, "length": 184, "gap_rates": [0.9382, 0.891, 0.8206, 0.7866, 0.747, 0.7356, 0.6694, 0.6166, 0.5888, 0.5608, 0.5266, 0.4426, 0.4142, 0.3936, 0.3684, 0.3536, 0.339, 0.3226, 0.3042, 0.296, 0.2868, 0.2812, 0.2758, 0.8064, 0.4978, 0.3964, 0.2498, 0.1952, 0.1662, 0.1472, 0.1404, 0.1386, 0.1374, 0.1354, 0.134, 0.1326, 0.1304, 0.126, 0.1114, 0.106, 0.0974, 0.0858, 0.0822, 0.0802, 0.079, 0.0764, 0.0752, 0.075, 0.0742, 0.0728, 0.7304, 0.8128, 0.8546, 0.8264, 0.7976, 0.7172, 0.0712, 0.083, 0.079, 0.9388, 0.919, 0.0724, 0.0698, 0.8918, 0.0686, 0.0658, 0.065, 0.0652, 0.0636, 0.0646, 0.0642, 0.0624, 0.06, 0.06, 0.0596, 0.0588, 0.0584, 0.0604, 0.0596, 0.1384, 0.2356, 0.273, 0.2794, 0.3292, 0.3994, 0.4266, 0.3886, 0.506, 0.5234, 0.584, 0.7784, 0.8862, 0.9344, 0.9472, 0.9442, 0.9158, 0.8426, 0.6348, 0.5352, 0.5142, 0.4902, 0.3744, 0.07, 0.0502, 0.0228, 0.0122, 0.0074, 0.007, 0.0066, 0.0088, 0.0036, 0.003, 0.0024, 0.0026, 0.0022, 0.002, 0.002, 0.002, 0.0024, 0.0024, 0.0028, 0.0034, 0.0036, 0.0044, 0.0052, 0.0056, 0.0174, 0.0172, 0.0174, 0.0174, 0.932, 0.0074, 0.007, 0.0076, 0.009, 0.0182, 0.0228, 0.0262, 0.0418, 0.0558, 0.0426, 0.0506, 0.081, 0.1366, 0.1584, 0.1964, 0.2294, 0.935, 0.9276, 0.3266, 0.3908, 0.4098, 0.443, 0.465, 0.4878, 0.5082, 0.5278, 0.553, 0.5952, 0.6056, 0.6542, 0.6446, 0.659, 0.6736, 0.6734, 0.687, 0.7404, 0.74, 0.75, 0.918, 0.8978, 0.864, 0.8672, 0.7568, 0.7654, 0.773, 0.7802, 0.7864, 0.7934, 0.8096, 0.8198, 0.8328, 0.844, 0.8736], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Prismane.gap.json b/pfam_gap_rates/Prismane.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc79ddc7e22b8558e94dfff2d8cb28b8cf66dffc
--- /dev/null
+++ b/pfam_gap_rates/Prismane.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pro-kuma_activ.gap.json b/pfam_gap_rates/Pro-kuma_activ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c43ccacdc4366341944eb40211d9b9e1cc6fb7cf
--- /dev/null
+++ b/pfam_gap_rates/Pro-kuma_activ.gap.json
@@ -0,0 +1 @@
+{"family": "Pro-kuma_activ", "n_seqs": 944, "length": 146, "gap_rates": [0.9279661016949152, 0.5296610169491526, 0.4322033898305085, 0.3654661016949153, 0.3273305084745763, 0.2764830508474576, 0.2298728813559322, 0.2044491525423729, 0.18008474576271186, 0.15572033898305085, 0.1483050847457627, 0.1408898305084746, 0.13135593220338984, 0.12182203389830508, 0.11016949152542373, 0.09427966101694915, 0.0826271186440678, 0.0815677966101695, 0.0815677966101695, 0.08050847457627118, 0.07944915254237288, 0.07627118644067797, 0.07838983050847458, 0.07627118644067797, 0.07203389830508475, 0.09322033898305085, 0.0858050847457627, 0.07521186440677965, 0.07521186440677965, 0.07309322033898305, 0.07097457627118645, 0.06991525423728813, 0.06991525423728813, 0.06779661016949153, 0.06779661016949153, 0.07627118644067797, 0.07944915254237288, 0.07521186440677965, 0.08792372881355932, 0.08050847457627118, 0.07627118644067797, 0.07733050847457627, 0.09322033898305085, 0.08792372881355932, 0.05190677966101695, 0.045550847457627115, 0.038135593220338986, 0.028601694915254237, 0.024364406779661018, 0.025423728813559324, 0.024364406779661018, 0.0211864406779661, 0.022245762711864406, 0.023305084745762712, 0.024364406779661018, 0.022245762711864406, 0.022245762711864406, 0.0211864406779661, 0.020127118644067795, 0.020127118644067795, 0.020127118644067795, 0.0211864406779661, 0.034957627118644065, 0.0211864406779661, 0.018008474576271187, 0.019067796610169493, 0.020127118644067795, 0.020127118644067795, 0.018008474576271187, 0.018008474576271187, 0.018008474576271187, 0.01694915254237288, 0.01694915254237288, 0.018008474576271187, 0.015889830508474576, 0.015889830508474576, 0.01694915254237288, 0.01694915254237288, 0.018008474576271187, 0.019067796610169493, 0.6684322033898306, 0.6366525423728814, 0.2319915254237288, 0.1620762711864407, 0.04978813559322034, 0.024364406779661018, 0.024364406779661018, 0.022245762711864406, 0.022245762711864406, 0.022245762711864406, 0.0211864406779661, 0.0211864406779661, 0.022245762711864406, 0.022245762711864406, 0.0211864406779661, 0.022245762711864406, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.02754237288135593, 0.028601694915254237, 0.028601694915254237, 0.028601694915254237, 0.03072033898305085, 0.03177966101694915, 0.034957627118644065, 0.036016949152542374, 0.03919491525423729, 0.04025423728813559, 0.04025423728813559, 0.0413135593220339, 0.2266949152542373, 0.2055084745762712, 0.909957627118644, 0.1461864406779661, 0.0625, 0.05296610169491525, 0.04978813559322034, 0.04978813559322034, 0.05084745762711865, 0.05190677966101695, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.8707627118644068, 0.05296610169491525, 0.05508474576271186, 0.05614406779661017, 0.05614406779661017, 0.05826271186440678, 0.059322033898305086, 0.06038135593220339, 0.0635593220338983, 0.07097457627118645, 0.06991525423728813, 0.07097457627118645, 0.07309322033898305, 0.07309322033898305, 0.07733050847457627, 0.09110169491525423, 0.11016949152542373, 0.13029661016949154, 0.20127118644067796, 0.2891949152542373, 0.4735169491525424], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ProRS-C_1.gap.json b/pfam_gap_rates/ProRS-C_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af1f8df2955e9613750918e6492455381d94374b
--- /dev/null
+++ b/pfam_gap_rates/ProRS-C_1.gap.json
@@ -0,0 +1 @@
+{"family": "ProRS-C_1", "n_seqs": 1062, "length": 95, "gap_rates": [0.2919020715630885, 0.12617702448210924, 0.09792843691148775, 0.08757062146892655, 0.0847457627118644, 0.07909604519774012, 0.07156308851224105, 0.0696798493408663, 0.06308851224105462, 0.059322033898305086, 0.05743879472693032, 0.009416195856873822, 0.615819209039548, 0.004708097928436911, 0.004708097928436911, 0.004708097928436911, 0.004708097928436911, 0.003766478342749529, 0.003766478342749529, 0.002824858757062147, 0.002824858757062147, 0.007532956685499058, 0.0018832391713747645, 0.0018832391713747645, 0.0018832391713747645, 0.0018832391713747645, 0.003766478342749529, 0.0018832391713747645, 0.0018832391713747645, 0.003766478342749529, 0.0018832391713747645, 0.01977401129943503, 0.004708097928436911, 0.652542372881356, 0.652542372881356, 0.6949152542372882, 0.704331450094162, 0.704331450094162, 0.7128060263653484, 0.7919020715630886, 0.8342749529190208, 0.8851224105461394, 0.935969868173258, 0.8512241054613936, 0.8210922787193974, 0.7278719397363466, 0.7071563088512242, 0.704331450094162, 0.7015065913370998, 0.652542372881356, 0.652542372881356, 0.6224105461393596, 0.0018832391713747645, 0.004708097928436911, 0.003766478342749529, 0.003766478342749529, 0.003766478342749529, 0.003766478342749529, 0.002824858757062147, 0.00847457627118644, 0.002824858757062147, 0.005649717514124294, 0.054613935969868174, 0.8258003766478342, 0.9209039548022598, 0.89924670433145, 0.7495291902071564, 0.512241054613936, 0.4726930320150659, 0.0903954802259887, 0.030131826741996232, 0.011299435028248588, 0.01224105461393597, 0.013182674199623353, 0.014124293785310734, 0.014124293785310734, 0.015065913370998116, 0.8549905838041432, 0.8502824858757062, 0.017890772128060263, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.017890772128060263, 0.023540489642184557, 0.021657250470809793, 0.032015065913371, 0.023540489642184557, 0.027306967984934087, 0.02824858757062147, 0.02824858757062147, 0.02919020715630885, 0.032015065913371, 0.03954802259887006, 0.05273069679849341], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pro_Al_protease.gap.json b/pfam_gap_rates/Pro_Al_protease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8f33d28d1e16cdeae94aafbfb5c5cfaa7cf3d8f
--- /dev/null
+++ b/pfam_gap_rates/Pro_Al_protease.gap.json
@@ -0,0 +1 @@
+{"family": "Pro_Al_protease", "n_seqs": 197, "length": 73, "gap_rates": [0.27918781725888325, 0.15228426395939088, 0.07106598984771574, 0.025380710659898477, 0.025380710659898477, 0.02030456852791878, 0.02030456852791878, 0.005076142131979695, 0.0, 0.0, 0.0, 0.0, 0.0, 0.08629441624365482, 0.8781725888324873, 0.8934010152284264, 0.9086294416243654, 0.949238578680203, 0.9238578680203046, 0.9035532994923858, 0.8934010152284264, 0.8781725888324873, 0.49238578680203043, 0.18274111675126903, 0.050761421319796954, 0.050761421319796954, 0.04060913705583756, 0.050761421319796954, 0.4467005076142132, 0.8426395939086294, 0.949238578680203, 0.9035532994923858, 0.751269035532995, 0.4365482233502538, 0.005076142131979695, 0.005076142131979695, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.18274111675126903, 0.17258883248730963, 0.01015228426395939, 0.015228426395939087, 0.02030456852791878, 0.025380710659898477, 0.9390862944162437, 0.47715736040609136, 0.04568527918781726, 0.030456852791878174, 0.03553299492385787, 0.03553299492385787, 0.050761421319796954, 0.06598984771573604, 0.07614213197969544, 0.09644670050761421, 0.14213197969543148, 0.27411167512690354, 0.4467005076142132, 0.8375634517766497], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Prolamin_like.gap.json b/pfam_gap_rates/Prolamin_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49d0285b27d5034cb2d2779f7dd08f2edd0c0063
--- /dev/null
+++ b/pfam_gap_rates/Prolamin_like.gap.json
@@ -0,0 +1 @@
+{"family": "Prolamin_like", "n_seqs": 295, "length": 82, "gap_rates": [0.3016949152542373, 0.09830508474576272, 0.09830508474576272, 0.09491525423728814, 0.09152542372881356, 0.0847457627118644, 0.0847457627118644, 0.4067796610169492, 0.37966101694915255, 0.04406779661016949, 0.030508474576271188, 0.030508474576271188, 0.02711864406779661, 0.02711864406779661, 0.023728813559322035, 0.023728813559322035, 0.02711864406779661, 0.023728813559322035, 0.02711864406779661, 0.020338983050847456, 0.01694915254237288, 0.0847457627118644, 0.6440677966101694, 0.05084745762711865, 0.08813559322033898, 0.44745762711864406, 0.03389830508474576, 0.7152542372881356, 0.010169491525423728, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013559322033898305, 0.9457627118644067, 0.061016949152542375, 0.010169491525423728, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.9491525423728814, 0.9491525423728814, 0.03728813559322034, 0.04406779661016949, 0.05084745762711865, 0.061016949152542375, 0.5457627118644067, 0.1288135593220339, 0.15932203389830507, 0.18983050847457628, 0.5220338983050847, 0.5050847457627119, 0.5084745762711864, 0.511864406779661, 0.5152542372881356, 0.6203389830508474, 0.8677966101694915, 0.6305084745762712, 0.5966101694915255, 0.5898305084745763, 0.5898305084745763, 0.5661016949152542, 0.2847457627118644, 0.27796610169491526, 0.28135593220338984, 0.27796610169491526, 0.27796610169491526, 0.2745762711864407, 0.28135593220338984, 0.28135593220338984, 0.27796610169491526, 0.288135593220339, 0.29152542372881357, 0.6338983050847458], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Proteasom_PSMB.gap.json b/pfam_gap_rates/Proteasom_PSMB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd8c6b69d6530bd33e2b0870f9e5ff45518eadc1
--- /dev/null
+++ b/pfam_gap_rates/Proteasom_PSMB.gap.json
@@ -0,0 +1 @@
+{"family": "Proteasom_PSMB", "n_seqs": 189, "length": 538, "gap_rates": [0.9312169312169312, 0.8677248677248677, 0.8306878306878307, 0.8201058201058201, 0.8201058201058201, 0.8042328042328042, 0.798941798941799, 0.7936507936507936, 0.783068783068783, 0.7777777777777778, 0.7671957671957672, 0.7619047619047619, 0.7566137566137566, 0.7566137566137566, 0.7407407407407407, 0.7354497354497355, 0.7195767195767195, 0.708994708994709, 0.7037037037037037, 0.6984126984126984, 0.6984126984126984, 0.6931216931216931, 0.6931216931216931, 0.6931216931216931, 0.6931216931216931, 0.6931216931216931, 0.6878306878306878, 0.6931216931216931, 0.6825396825396826, 0.6825396825396826, 0.6825396825396826, 0.6825396825396826, 0.6772486772486772, 0.873015873015873, 0.6984126984126984, 0.6825396825396826, 0.671957671957672, 0.6772486772486772, 0.656084656084656, 0.6402116402116402, 0.6402116402116402, 0.6402116402116402, 0.6931216931216931, 0.6402116402116402, 0.7619047619047619, 0.9153439153439153, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Proteasom_Rpn13.gap.json b/pfam_gap_rates/Proteasom_Rpn13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2a334647a7b3d8efd897a7f25a28b8c3516d4ee
--- /dev/null
+++ b/pfam_gap_rates/Proteasom_Rpn13.gap.json
@@ -0,0 +1 @@
+{"family": "Proteasom_Rpn13", "n_seqs": 329, "length": 105, "gap_rates": [0.20972644376899696, 0.19756838905775076, 0.18541033434650456, 0.1762917933130699, 0.17325227963525835, 0.14893617021276595, 0.8297872340425532, 0.8237082066869301, 0.3768996960486322, 0.3130699088145897, 0.0851063829787234, 0.2765957446808511, 0.25227963525835867, 0.057750759878419454, 0.0547112462006079, 0.0547112462006079, 0.0547112462006079, 0.05167173252279635, 0.05167173252279635, 0.05167173252279635, 0.05167173252279635, 0.05167173252279635, 0.0486322188449848, 0.0486322188449848, 0.0486322188449848, 0.0486322188449848, 0.8693009118541033, 0.2127659574468085, 0.07598784194528875, 0.06382978723404255, 0.060790273556231005, 0.9452887537993921, 0.05167173252279635, 0.0425531914893617, 0.03951367781155015, 0.03951367781155015, 0.0364741641337386, 0.0364741641337386, 0.0364741641337386, 0.0364741641337386, 0.0364741641337386, 0.0364741641337386, 0.0364741641337386, 0.6778115501519757, 0.9452887537993921, 0.7355623100303952, 0.0790273556231003, 0.057750759878419454, 0.0547112462006079, 0.04559270516717325, 0.9422492401215805, 0.030395136778115502, 0.0243161094224924, 0.02735562310030395, 0.02735562310030395, 0.03343465045592705, 0.02127659574468085, 0.02127659574468085, 0.0486322188449848, 0.0182370820668693, 0.0182370820668693, 0.0182370820668693, 0.0182370820668693, 0.0182370820668693, 0.0182370820668693, 0.0182370820668693, 0.8237082066869301, 0.8389057750759878, 0.8601823708206687, 0.8996960486322189, 0.8875379939209727, 0.8419452887537994, 0.8328267477203647, 0.8206686930091185, 0.015197568389057751, 0.0851063829787234, 0.09422492401215805, 0.17933130699088146, 0.9118541033434651, 0.939209726443769, 0.939209726443769, 0.8753799392097265, 0.0243161094224924, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.0182370820668693, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.0182370820668693, 0.0182370820668693, 0.057750759878419454, 0.02735562310030395, 0.02127659574468085, 0.02735562310030395, 0.0243161094224924, 0.02735562310030395, 0.030395136778115502, 0.02735562310030395, 0.0425531914893617, 0.04559270516717325, 0.0486322188449848, 0.0486322188449848, 0.0790273556231003], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Proton_antipo_C.gap.json b/pfam_gap_rates/Proton_antipo_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0ef1b8681c87d4f9027c9a4ba389389fea9b46c
--- /dev/null
+++ b/pfam_gap_rates/Proton_antipo_C.gap.json
@@ -0,0 +1 @@
+{"family": "Proton_antipo_C", "n_seqs": 211, "length": 256, "gap_rates": [0.8056872037914692, 0.8056872037914692, 0.8056872037914692, 0.8056872037914692, 0.8056872037914692, 0.8056872037914692, 0.8056872037914692, 0.8056872037914692, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8056872037914692, 0.8056872037914692, 0.8056872037914692, 0.7962085308056872, 0.8056872037914692, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8056872037914692, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8009478672985783, 0.8293838862559242, 0.8341232227488151, 0.8293838862559242, 0.8056872037914692, 0.8056872037914692, 0.8104265402843602, 0.8104265402843602, 0.8056872037914692, 0.8151658767772512, 0.8199052132701422, 0.8199052132701422, 0.8199052132701422, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Proton_antipo_N.gap.json b/pfam_gap_rates/Proton_antipo_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0405c194ce3176d5233e502d431d4864dfb223d0
--- /dev/null
+++ b/pfam_gap_rates/Proton_antipo_N.gap.json
@@ -0,0 +1 @@
+{"family": "Proton_antipo_N", "n_seqs": 2453, "length": 60, "gap_rates": [0.7607011822258459, 0.47492865878516105, 0.3285772523440685, 0.24867509172441907, 0.24174480228291886, 0.23399918467183042, 0.37382796575621685, 0.37178964533224623, 0.23970648185894822, 0.22258459029759478, 0.16673461068079903, 0.10640032613126783, 0.08479412963717896, 0.0631879331430901, 0.04769669792091317, 0.023644516918059518, 0.015898899306971057, 0.012637586628618018, 0.01222992254382389, 0.01141459437423563, 0.0110069302894415, 0.0110069302894415, 0.010191602119853241, 0.00978393803505911, 0.0020383204239706482, 0.0016306563391765185, 0.0016306563391765185, 0.0012229922543823889, 0.0012229922543823889, 0.0012229922543823889, 0.0008153281695882593, 0.0012229922543823889, 0.0012229922543823889, 0.0012229922543823889, 0.00040766408479412964, 0.00040766408479412964, 0.00040766408479412964, 0.00040766408479412964, 0.00040766408479412964, 0.0008153281695882593, 0.0008153281695882593, 0.0012229922543823889, 0.0012229922543823889, 0.003261312678353037, 0.004891969017529555, 0.9364044027721158, 0.013045250713412148, 0.018344883815735832, 0.03465144720750102, 0.9429270281288219, 0.03913575214023644, 0.04484304932735426, 0.049735018344883815, 0.05055034651447207, 0.05340399510803098, 0.06807990216061965, 0.08683245006114962, 0.11047696697920913, 0.1911944557684468, 0.5336322869955157], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PucR.gap.json b/pfam_gap_rates/PucR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48463a736ef1f5f596d5170bae1343065eb1fcd9
--- /dev/null
+++ b/pfam_gap_rates/PucR.gap.json
@@ -0,0 +1 @@
+{"family": "PucR", "n_seqs": 800, "length": 134, "gap_rates": [0.53375, 0.2875, 0.25625, 0.24125, 0.22875, 0.22, 0.20625, 0.1725, 0.85, 0.14875, 0.12625, 0.88875, 0.315, 0.0875, 0.08625, 0.075, 0.0725, 0.0725, 0.06875, 0.05875, 0.0625, 0.0575, 0.03125, 0.025, 0.02125, 0.0175, 0.015, 0.01125, 0.00875, 0.00875, 0.00625, 0.00375, 0.00375, 0.00375, 0.00375, 0.02625, 0.00625, 0.00625, 0.92125, 0.9375, 0.9475, 0.94375, 0.925, 0.92125, 0.00375, 0.00625, 0.00375, 0.015, 0.005, 0.00375, 0.00375, 0.00375, 0.00125, 0.00125, 0.00125, 0.06125, 0.005, 0.005, 0.0025, 0.0025, 0.86875, 0.00375, 0.15125, 0.03625, 0.0175, 0.01375, 0.015, 0.0125, 0.0075, 0.00375, 0.0025, 0.0025, 0.0025, 0.0025, 0.0025, 0.0025, 0.0025, 0.005, 0.005, 0.0025, 0.0025, 0.0025, 0.0025, 0.00375, 0.00375, 0.00375, 0.00375, 0.94625, 0.015, 0.64625, 0.76625, 0.57125, 0.0175, 0.40375, 0.50125, 0.32, 0.01, 0.01, 0.0075, 0.0075, 0.0075, 0.0075, 0.00875, 0.00875, 0.01125, 0.01, 0.0125, 0.015, 0.01375, 0.01375, 0.01375, 0.01375, 0.01375, 0.01375, 0.01375, 0.01375, 0.01375, 0.02, 0.95, 0.02375, 0.025, 0.02875, 0.02875, 0.02875, 0.02875, 0.03, 0.03375, 0.03875, 0.05875, 0.065, 0.105, 0.19375, 0.33125, 0.50375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pur_DNA_glyco.gap.json b/pfam_gap_rates/Pur_DNA_glyco.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a06a54a7fe5aefb6ad5a6063fa269e8ba70a239
--- /dev/null
+++ b/pfam_gap_rates/Pur_DNA_glyco.gap.json
@@ -0,0 +1 @@
+{"family": "Pur_DNA_glyco", "n_seqs": 877, "length": 211, "gap_rates": [0.621436716077537, 0.30786773090079816, 0.22120866590649943, 0.16989737742303307, 0.12314709236031927, 0.08209806157354618, 0.06727480045610035, 0.05815279361459521, 0.052451539338654506, 0.04446978335233751, 0.04446978335233751, 0.04446978335233751, 0.043329532497149374, 0.04218928164196123, 0.039908779931584946, 0.039908779931584946, 0.03876852907639681, 0.03876852907639681, 0.037628278221208664, 0.037628278221208664, 0.037628278221208664, 0.036488027366020526, 0.2759407069555302, 0.2748004561003421, 0.27708095781071834, 0.26567844925883694, 0.8472063854047891, 0.03420752565564424, 0.03420752565564424, 0.03420752565564424, 0.03420752565564424, 0.03192702394526796, 0.03192702394526796, 0.03192702394526796, 0.03192702394526796, 0.03192702394526796, 0.03192702394526796, 0.03192702394526796, 0.03192702394526796, 0.03192702394526796, 0.22576966932725198, 0.9452679589509693, 0.9475484606613455, 0.9464082098061574, 0.9144811858608894, 0.03420752565564424, 0.03192702394526796, 0.03192702394526796, 0.03192702394526796, 0.03192702394526796, 0.0330672748004561, 0.0330672748004561, 0.0330672748004561, 0.0330672748004561, 0.0330672748004561, 0.046750285062713795, 0.03420752565564424, 0.6522234891676169, 0.0330672748004561, 0.03420752565564424, 0.03534777651083238, 0.03534777651083238, 0.03534777651083238, 0.0330672748004561, 0.028506271379703536, 0.027366020524515394, 0.028506271379703536, 0.028506271379703536, 0.027366020524515394, 0.026225769669327253, 0.026225769669327253, 0.027366020524515394, 0.026225769669327253, 0.026225769669327253, 0.026225769669327253, 0.026225769669327253, 0.026225769669327253, 0.026225769669327253, 0.026225769669327253, 0.18015963511972635, 0.027366020524515394, 0.027366020524515394, 0.02508551881413911, 0.02280501710376283, 0.02280501710376283, 0.021664766248574687, 0.020524515393386546, 0.020524515393386546, 0.07867730900798175, 0.08551881413911061, 0.06271379703534778, 0.06271379703534778, 0.055872291904218926, 0.01710376282782212, 0.018244013683010263, 0.018244013683010263, 0.018244013683010263, 0.018244013683010263, 0.018244013683010263, 0.019384264538198404, 0.019384264538198404, 0.019384264538198404, 0.020524515393386546, 0.019384264538198404, 0.08893956670467502, 0.09464082098061574, 0.08779931584948689, 0.09578107183580388, 0.10604332953249715, 0.12770809578107184, 0.1379703534777651, 0.13568985176738882, 0.13683010262257697, 0.13112884834663627, 0.11744583808437856, 0.1379703534777651, 0.1847206385404789, 0.20182440136830102, 0.26795895096921324, 0.7286202964652223, 0.7628278221208666, 0.8129988597491448, 0.8403648802736602, 0.942987457240593, 0.9475484606613455, 0.928164196123147, 0.8266818700114025, 0.7844925883694412, 0.7514253135689852, 0.5131128848346637, 0.2120866590649943, 0.1904218928164196, 0.18015963511972635, 0.1265678449258837, 0.026225769669327253, 0.02394526795895097, 0.02280501710376283, 0.02280501710376283, 0.02280501710376283, 0.02280501710376283, 0.02280501710376283, 0.02280501710376283, 0.02394526795895097, 0.02394526795895097, 0.02508551881413911, 0.02394526795895097, 0.02508551881413911, 0.02508551881413911, 0.02508551881413911, 0.026225769669327253, 0.8996579247434435, 0.027366020524515394, 0.027366020524515394, 0.027366020524515394, 0.028506271379703536, 0.027366020524515394, 0.027366020524515394, 0.04218928164196123, 0.3888255416191562, 0.9304446978335233, 0.774230330672748, 0.043329532497149374, 0.04561003420752566, 0.036488027366020526, 0.0330672748004561, 0.03534777651083238, 0.0330672748004561, 0.03078677309007982, 0.7514253135689852, 0.927023945267959, 0.9464082098061574, 0.935005701254276, 0.9087799315849487, 0.4811858608893957, 0.29304446978335236, 0.059293044469783354, 0.036488027366020526, 0.036488027366020526, 0.036488027366020526, 0.036488027366020526, 0.036488027366020526, 0.036488027366020526, 0.03534777651083238, 0.03534777651083238, 0.03534777651083238, 0.036488027366020526, 0.037628278221208664, 0.036488027366020526, 0.036488027366020526, 0.037628278221208664, 0.03876852907639681, 0.03876852907639681, 0.03876852907639681, 0.03876852907639681, 0.04789053591790194, 0.03876852907639681, 0.44013683010262256, 0.8597491448118586, 0.4618015963511973, 0.4127708095781072, 0.03876852907639681, 0.04104903078677309, 0.04104903078677309, 0.04104903078677309, 0.043329532497149374, 0.04561003420752566, 0.07639680729760548, 0.13568985176738882, 0.1961231470923603, 0.2588369441277081, 0.5256556442417332], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Put_DNA-bind_N.gap.json b/pfam_gap_rates/Put_DNA-bind_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b9dce8ec9ae2819b2d67a2eb68aec286ac374ec
--- /dev/null
+++ b/pfam_gap_rates/Put_DNA-bind_N.gap.json
@@ -0,0 +1 @@
+{"family": "Put_DNA-bind_N", "n_seqs": 795, "length": 49, "gap_rates": [0.43522012578616354, 0.07044025157232704, 0.05157232704402516, 0.042767295597484274, 0.03773584905660377, 0.027672955974842768, 0.021383647798742137, 0.016352201257861635, 0.016352201257861635, 0.01509433962264151, 0.01509433962264151, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.012578616352201259, 0.011320754716981131, 0.011320754716981131, 0.010062893081761006, 0.010062893081761006, 0.012578616352201259, 0.02389937106918239, 0.027672955974842768, 0.016352201257861635, 0.0025157232704402514, 0.0012578616352201257, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.20628930817610064], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pyr_redox_2.gap.json b/pfam_gap_rates/Pyr_redox_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1b36d85542cbef4b7e9a9bb5afb05e776018ab2
--- /dev/null
+++ b/pfam_gap_rates/Pyr_redox_2.gap.json
@@ -0,0 +1 @@
+{"family": "Pyr_redox_2", "n_seqs": 5000, "length": 428, "gap_rates": [0.6358, 0.1496, 0.1012, 0.083, 0.0824, 0.0798, 0.079, 0.0782, 0.0782, 0.0782, 0.0784, 0.0784, 0.0768, 0.0764, 0.0758, 0.0758, 0.0754, 0.0752, 0.074, 0.0742, 0.0732, 0.7752, 0.9284, 0.8898, 0.7574, 0.0798, 0.0698, 0.0694, 0.069, 0.069, 0.0686, 0.0684, 0.0684, 0.4462, 0.6892, 0.8602, 0.9426, 0.7044, 0.6826, 0.2224, 0.1196, 0.0812, 0.1284, 0.112, 0.107, 0.1048, 0.0942, 0.1342, 0.1096, 0.0764, 0.073, 0.0878, 0.0798, 0.0764, 0.072, 0.0708, 0.0706, 0.0722, 0.0728, 0.0742, 0.0762, 0.0776, 0.1014, 0.7922, 0.8022, 0.8126, 0.832, 0.9006, 0.9386, 0.8384, 0.8186, 0.8062, 0.7996, 0.7744, 0.0836, 0.1882, 0.3106, 0.442, 0.5252, 0.6066, 0.7326, 0.745, 0.772, 0.8622, 0.8978, 0.9182, 0.9316, 0.9412, 0.936, 0.9246, 0.909, 0.8804, 0.7926, 0.7534, 0.7378, 0.6766, 0.5686, 0.4804, 0.3702, 0.2662, 0.1164, 0.086, 0.3162, 0.4046, 0.3676, 0.3074, 0.277, 0.2408, 0.2092, 0.1268, 0.8616, 0.1116, 0.104, 0.1052, 0.0968, 0.0894, 0.0944, 0.459, 0.2046, 0.1334, 0.0924, 0.088, 0.0762, 0.1448, 0.1094, 0.0858, 0.0886, 0.2686, 0.1042, 0.0844, 0.0824, 0.0878, 0.3682, 0.4192, 0.4508, 0.4456, 0.506, 0.7686, 0.7964, 0.9074, 0.9456, 0.9344, 0.8386, 0.7824, 0.748, 0.2406, 0.1998, 0.1778, 0.1416, 0.1026, 0.0816, 0.0608, 0.059, 0.0586, 0.0584, 0.0578, 0.0574, 0.0574, 0.0578, 0.058, 0.058, 0.0624, 0.8702, 0.0636, 0.0648, 0.0686, 0.0704, 0.0774, 0.8532, 0.155, 0.1424, 0.079, 0.0838, 0.084, 0.8934, 0.9126, 0.9318, 0.9422, 0.9256, 0.905, 0.826, 0.3704, 0.2522, 0.2374, 0.2098, 0.296, 0.2682, 0.2468, 0.4138, 0.2138, 0.1636, 0.112, 0.1104, 0.11, 0.1082, 0.108, 0.1104, 0.1132, 0.1186, 0.1188, 0.1204, 0.1208, 0.1248, 0.113, 0.7064, 0.775, 0.8124, 0.8392, 0.8764, 0.898, 0.9118, 0.9314, 0.9036, 0.8898, 0.8574, 0.8284, 0.7998, 0.7276, 0.6366, 0.246, 0.9332, 0.8588, 0.2274, 0.0982, 0.0964, 0.0962, 0.0954, 0.0962, 0.0986, 0.0962, 0.0946, 0.0938, 0.094, 0.0936, 0.0936, 0.0934, 0.0946, 0.0944, 0.0946, 0.0964, 0.1012, 0.1128, 0.1138, 0.1188, 0.1058, 0.8394, 0.856, 0.8632, 0.873, 0.8832, 0.8866, 0.9, 0.927, 0.8904, 0.8846, 0.8758, 0.87, 0.8604, 0.8512, 0.8344, 0.1058, 0.8942, 0.1108, 0.111, 0.1278, 0.1162, 0.117, 0.1148, 0.135, 0.1304, 0.1324, 0.13, 0.1584, 0.786, 0.377, 0.3584, 0.3148, 0.307, 0.2796, 0.2506, 0.1504, 0.139, 0.135, 0.134, 0.1572, 0.1534, 0.1362, 0.1344, 0.1324, 0.1288, 0.1298, 0.1486, 0.8784, 0.1382, 0.127, 0.1266, 0.1264, 0.1262, 0.1634, 0.128, 0.1278, 0.1268, 0.1258, 0.1534, 0.1334, 0.1292, 0.1284, 0.1402, 0.1332, 0.134, 0.1974, 0.622, 0.7632, 0.8972, 0.949, 0.9208, 0.8502, 0.7176, 0.5512, 0.3326, 0.3066, 0.252, 0.8906, 0.9386, 0.608, 0.1622, 0.1484, 0.1426, 0.1404, 0.1446, 0.1506, 0.153, 0.1336, 0.7412, 0.8454, 0.89, 0.9038, 0.9192, 0.9346, 0.946, 0.9412, 0.9236, 0.907, 0.8982, 0.867, 0.8122, 0.7018, 0.1268, 0.1236, 0.1232, 0.123, 0.1236, 0.1228, 0.1224, 0.1234, 0.124, 0.1256, 0.131, 0.1282, 0.1258, 0.1256, 0.1266, 0.1304, 0.1466, 0.1388, 0.2144, 0.5884, 0.9318, 0.672, 0.2806, 0.1658, 0.1608, 0.1588, 0.1606, 0.1774, 0.1788, 0.3714, 0.233, 0.1698, 0.1682, 0.1702, 0.1706, 0.1722, 0.1712, 0.1728, 0.1738, 0.1742, 0.174, 0.9446, 0.8432, 0.18, 0.1754, 0.1854, 0.8826, 0.1754, 0.1752, 0.1752, 0.1754, 0.1758, 0.176, 0.1766, 0.1768, 0.1802, 0.1818, 0.1822, 0.8152, 0.8534, 0.8894, 0.9168, 0.8652, 0.842, 0.7924, 0.74, 0.7564, 0.6194, 0.3002, 0.2972, 0.3092, 0.3176, 0.3262, 0.3358, 0.3468, 0.354, 0.3598, 0.381, 0.4064, 0.4428, 0.4952], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pyrid_oxidase_2.gap.json b/pfam_gap_rates/Pyrid_oxidase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0313f5bd8472e92204f4def77eb7417d5243d7f
--- /dev/null
+++ b/pfam_gap_rates/Pyrid_oxidase_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pyridox_ox_2.gap.json b/pfam_gap_rates/Pyridox_ox_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02a8a1bdba80d2c162d784b146b8f63b4be10d9b
--- /dev/null
+++ b/pfam_gap_rates/Pyridox_ox_2.gap.json
@@ -0,0 +1 @@
+{"family": "Pyridox_ox_2", "n_seqs": 1190, "length": 168, "gap_rates": [0.6756302521008404, 0.35378151260504204, 0.15630252100840336, 0.09411764705882353, 0.052941176470588235, 0.03865546218487395, 0.031932773109243695, 0.031092436974789917, 0.02773109243697479, 0.02773109243697479, 0.02773109243697479, 0.02773109243697479, 0.02773109243697479, 0.02689075630252101, 0.02689075630252101, 0.02689075630252101, 0.026050420168067228, 0.02689075630252101, 0.026050420168067228, 0.025210084033613446, 0.0226890756302521, 0.7689075630252101, 0.031092436974789917, 0.024369747899159664, 0.02100840336134454, 0.9369747899159664, 0.8680672268907563, 0.021848739495798318, 0.02100840336134454, 0.02100840336134454, 0.019327731092436976, 0.018487394957983194, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.015126050420168067, 0.015126050420168067, 0.7932773109243697, 0.8899159663865546, 0.9336134453781513, 0.9243697478991597, 0.8722689075630252, 0.7638655462184873, 0.01680672268907563, 0.058823529411764705, 0.012605042016806723, 0.826890756302521, 0.926890756302521, 0.907563025210084, 0.8016806722689076, 0.012605042016806723, 0.011764705882352941, 0.011764705882352941, 0.010924369747899159, 0.010924369747899159, 0.012605042016806723, 0.011764705882352941, 0.9428571428571428, 0.019327731092436976, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.010084033613445379, 0.010084033613445379, 0.010924369747899159, 0.010084033613445379, 0.008403361344537815, 0.873109243697479, 0.9142857142857143, 0.9319327731092437, 0.8957983193277311, 0.6092436974789915, 0.21932773109243697, 0.2042016806722689, 0.17563025210084032, 0.646218487394958, 0.02857142857142857, 0.010924369747899159, 0.008403361344537815, 0.007563025210084034, 0.007563025210084034, 0.009243697478991597, 0.015966386554621848, 0.9319327731092437, 0.07899159663865546, 0.037815126050420166, 0.029411764705882353, 0.13949579831932774, 0.11008403361344538, 0.08739495798319327, 0.05546218487394958, 0.04453781512605042, 0.052100840336134456, 0.5, 0.44285714285714284, 0.4235294117647059, 0.4504201680672269, 0.3546218487394958, 0.2630252100840336, 0.146218487394958, 0.7394957983193278, 0.025210084033613446, 0.18907563025210083, 0.007563025210084034, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.005042016806722689, 0.0058823529411764705, 0.0067226890756302525, 0.007563025210084034, 0.008403361344537815, 0.18487394957983194, 0.03613445378151261, 0.021848739495798318, 0.01680672268907563, 0.015126050420168067, 0.01680672268907563, 0.020168067226890758, 0.020168067226890758, 0.023529411764705882, 0.02689075630252101, 0.02689075630252101, 0.03613445378151261, 0.034453781512605045, 0.06050420168067227, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.1, 0.08571428571428572, 0.22857142857142856, 0.21008403361344538, 0.8554621848739495, 0.17142857142857143, 0.17899159663865546, 0.253781512605042, 0.2453781512605042, 0.23949579831932774, 0.9319327731092437, 0.8378151260504202, 0.38823529411764707, 0.3168067226890756, 0.28991596638655465, 0.2689075630252101, 0.24033613445378152, 0.23529411764705882, 0.22941176470588234, 0.22941176470588234, 0.1781512605042017, 0.10168067226890756, 0.07983193277310924, 0.07815126050420168, 0.0773109243697479, 0.0773109243697479, 0.07815126050420168, 0.07899159663865546, 0.08151260504201681, 0.08991596638655462, 0.10336134453781512, 0.11176470588235295, 0.11932773109243698, 0.12773109243697478, 0.15126050420168066, 0.6436974789915967], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/QRPTase_C.gap.json b/pfam_gap_rates/QRPTase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..678261e403566f97ac93a4cbc55fdf39ccf63173
--- /dev/null
+++ b/pfam_gap_rates/QRPTase_C.gap.json
@@ -0,0 +1 @@
+{"family": "QRPTase_C", "n_seqs": 1952, "length": 195, "gap_rates": [0.15471311475409835, 0.03432377049180328, 0.030737704918032786, 0.028688524590163935, 0.027663934426229508, 0.027663934426229508, 0.02612704918032787, 0.025102459016393443, 0.025102459016393443, 0.02459016393442623, 0.0235655737704918, 0.022540983606557378, 0.022540983606557378, 0.022540983606557378, 0.022028688524590164, 0.8104508196721312, 0.795594262295082, 0.05993852459016393, 0.04405737704918033, 0.018442622950819672, 0.017418032786885244, 0.016905737704918034, 0.016905737704918034, 0.01639344262295082, 0.01639344262295082, 0.015881147540983607, 0.015881147540983607, 0.01639344262295082, 0.018442622950819672, 0.017930327868852458, 0.016905737704918034, 0.02151639344262295, 0.0194672131147541, 0.01485655737704918, 0.015368852459016393, 0.015368852459016393, 0.01485655737704918, 0.01485655737704918, 0.01485655737704918, 0.01485655737704918, 0.01485655737704918, 0.014344262295081968, 0.014344262295081968, 0.014344262295081968, 0.015368852459016393, 0.9021516393442623, 0.9021516393442623, 0.9047131147540983, 0.9052254098360656, 0.9021516393442623, 0.9021516393442623, 0.9011270491803278, 0.01485655737704918, 0.015881147540983607, 0.014344262295081968, 0.015368852459016393, 0.016905737704918034, 0.016905737704918034, 0.015368852459016393, 0.015881147540983607, 0.013831967213114754, 0.014344262295081968, 0.014344262295081968, 0.013831967213114754, 0.014344262295081968, 0.013831967213114754, 0.014344262295081968, 0.014344262295081968, 0.014344262295081968, 0.015368852459016393, 0.01639344262295082, 0.015881147540983607, 0.015368852459016393, 0.03381147540983607, 0.9195696721311475, 0.9369877049180327, 0.9006147540983607, 0.017930327868852458, 0.015368852459016393, 0.01639344262295082, 0.017930327868852458, 0.018954918032786885, 0.018954918032786885, 0.018954918032786885, 0.018442622950819672, 0.019979508196721313, 0.022540983606557378, 0.02663934426229508, 0.02663934426229508, 0.033299180327868855, 0.025614754098360656, 0.025102459016393443, 0.08913934426229508, 0.19569672131147542, 0.8360655737704918, 0.9364754098360656, 0.8135245901639344, 0.016905737704918034, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015368852459016393, 0.022540983606557378, 0.018954918032786885, 0.017930327868852458, 0.019979508196721313, 0.017930327868852458, 0.015881147540983607, 0.01639344262295082, 0.015881147540983607, 0.01639344262295082, 0.015881147540983607, 0.01639344262295082, 0.9415983606557377, 0.016905737704918034, 0.016905737704918034, 0.9267418032786885, 0.9472336065573771, 0.9339139344262295, 0.8442622950819673, 0.017418032786885244, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015368852459016393, 0.015368852459016393, 0.015368852459016393, 0.017930327868852458, 0.9487704918032787, 0.017930327868852458, 0.017930327868852458, 0.017930327868852458, 0.015368852459016393, 0.01485655737704918, 0.015881147540983607, 0.015368852459016393, 0.015881147540983607, 0.44723360655737704, 0.4707991803278688, 0.9298155737704918, 0.5466188524590164, 0.13780737704918034, 0.10399590163934426, 0.02612704918032787, 0.02920081967213115, 0.02612704918032787, 0.8304303278688525, 0.913422131147541, 0.867827868852459, 0.7925204918032787, 0.017930327868852458, 0.016905737704918034, 0.016905737704918034, 0.016905737704918034, 0.015881147540983607, 0.016905737704918034, 0.015881147540983607, 0.02151639344262295, 0.016905737704918034, 0.01639344262295082, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.015881147540983607, 0.01639344262295082, 0.015881147540983607, 0.06762295081967214, 0.017930327868852458, 0.022028688524590164, 0.022540983606557378, 0.02663934426229508, 0.0235655737704918, 0.0235655737704918, 0.02920081967213115, 0.05225409836065574, 0.06506147540983606, 0.06403688524590163, 0.06454918032786885, 0.06608606557377049, 0.06915983606557377, 0.0706967213114754, 0.0706967213114754, 0.07120901639344263, 0.07428278688524591, 0.0855532786885246, 0.11424180327868852, 0.2387295081967213], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/QueT.gap.json b/pfam_gap_rates/QueT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a7901bfa57e6631c86cf4f9c5bc01a0f0ee4725
--- /dev/null
+++ b/pfam_gap_rates/QueT.gap.json
@@ -0,0 +1 @@
+{"family": "QueT", "n_seqs": 442, "length": 173, "gap_rates": [0.251131221719457, 0.06108597285067873, 0.03619909502262444, 0.024886877828054297, 0.024886877828054297, 0.020361990950226245, 0.020361990950226245, 0.020361990950226245, 0.020361990950226245, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.020361990950226245, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.042986425339366516, 0.01809954751131222, 0.7647058823529411, 0.751131221719457, 0.01809954751131222, 0.01583710407239819, 0.01583710407239819, 0.01583710407239819, 0.013574660633484163, 0.01583710407239819, 0.01583710407239819, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.9343891402714932, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.8484162895927602, 0.006787330316742082, 0.006787330316742082, 0.006787330316742082, 0.9298642533936652, 0.04751131221719457, 0.004524886877828055, 0.01583710407239819, 0.02262443438914027, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.011312217194570135, 0.00904977375565611, 0.00904977375565611, 0.011312217194570135, 0.00904977375565611, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.08144796380090498, 0.02262443438914027, 0.01809954751131222, 0.1583710407239819, 0.4457013574660634, 0.5429864253393665, 0.6244343891402715, 0.918552036199095, 0.9321266968325792, 0.9321266968325792, 0.9434389140271493, 0.9434389140271493, 0.9321266968325792, 0.9253393665158371, 0.7081447963800905, 0.5542986425339367, 0.4819004524886878, 0.3665158371040724, 0.01809954751131222, 0.020361990950226245, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.013574660633484163, 0.013574660633484163, 0.011312217194570135, 0.011312217194570135, 0.013574660633484163, 0.013574660633484163, 0.2239819004524887, 0.013574660633484163, 0.011312217194570135, 0.011312217194570135, 0.00904977375565611, 0.02262443438914027, 0.033936651583710405, 0.748868778280543, 0.8099547511312217, 0.8687782805429864, 0.9230769230769231, 0.9434389140271493, 0.9389140271493213, 0.8846153846153846, 0.8416289592760181, 0.7601809954751131, 0.748868778280543, 0.01583710407239819, 0.12669683257918551, 0.6719457013574661, 0.7714932126696833, 0.14027149321266968, 0.11312217194570136, 0.02262443438914027, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.39592760180995473, 0.013574660633484163, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.013574660633484163, 0.024886877828054297, 0.03619909502262444, 0.05429864253393665, 0.23755656108597284, 0.5339366515837104], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/R3H.gap.json b/pfam_gap_rates/R3H.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e955ac942702643b37777523810a11adaf5869ac
--- /dev/null
+++ b/pfam_gap_rates/R3H.gap.json
@@ -0,0 +1 @@
+{"family": "R3H", "n_seqs": 2494, "length": 65, "gap_rates": [0.8744987971130713, 0.5733761026463512, 0.33360064153969526, 0.2678428227746592, 0.20729751403368082, 0.15838011226944668, 0.1347233360064154, 0.11427425821972735, 0.08700882117080995, 0.07177225340817964, 0.06415396952686447, 0.05533279871692061, 0.05172413793103448, 0.049318364073777064, 0.057738572574178026, 0.05052125100240577, 0.048115477145148355, 0.8380112269446672, 0.029270248596631916, 0.9486768243785084, 0.8696872493985566, 0.018043303929430633, 0.008821170809943865, 0.007217321571772253, 0.00681635926222935, 0.00681635926222935, 0.00681635926222935, 0.00681635926222935, 0.8624699278267843, 0.0028067361668003207, 0.002004811547714515, 0.0016038492381716118, 0.0012028869286287089, 0.00040096230954290296, 0.00040096230954290296, 0.00040096230954290296, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008019246190858059, 0.0016038492381716118, 0.0016038492381716118, 0.0028067361668003207, 0.002004811547714515, 0.5709703287890938, 0.0028067361668003207, 0.0052125100240577385, 0.00801924619085806, 0.026463512429831595, 0.04330392943063352, 0.0673616680032077, 0.08019246190858059, 0.09783480352846832, 0.09663191659983962, 0.09623095429029671, 0.09382518043303929, 0.09502806736166801, 0.09582999198075381, 0.09823576583801123, 0.10585404971932638, 0.11267040898155574, 0.24699278267842822, 0.6555733761026463], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RBD-FIP.gap.json b/pfam_gap_rates/RBD-FIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c0f68c6bdcda2bee9e2498af7799efeb54a5946
--- /dev/null
+++ b/pfam_gap_rates/RBD-FIP.gap.json
@@ -0,0 +1 @@
+{"family": "RBD-FIP", "n_seqs": 193, "length": 48, "gap_rates": [0.29015544041450775, 0.25906735751295334, 0.17616580310880828, 0.11917098445595854, 0.08808290155440414, 0.07253886010362694, 0.05699481865284974, 0.046632124352331605, 0.03626943005181347, 0.03626943005181347, 0.03626943005181347, 0.031088082901554404, 0.025906735751295335, 0.02072538860103627, 0.02072538860103627, 0.015544041450777202, 0.015544041450777202, 0.0051813471502590676, 0.6424870466321243, 0.6528497409326425, 0.6528497409326425, 0.6580310880829016, 0.6528497409326425, 0.6424870466321243, 0.6424870466321243, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.02072538860103627, 0.08808290155440414, 0.27979274611398963], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RDD.gap.json b/pfam_gap_rates/RDD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f57e4b7b104a47326b6f615397d1ad715bf1db7
--- /dev/null
+++ b/pfam_gap_rates/RDD.gap.json
@@ -0,0 +1 @@
+{"family": "RDD", "n_seqs": 2314, "length": 189, "gap_rates": [0.733362143474503, 0.3409680207433016, 0.26145203111495247, 0.18798617113223856, 0.13223854796888504, 0.11235955056179775, 0.10328435609334485, 0.09161624891961971, 0.08426966292134831, 0.08297320656871218, 0.07865168539325842, 0.07649092480553155, 0.0756266205704408, 0.07476231633535005, 0.07346585998271392, 0.07303370786516854, 0.07260155574762317, 0.07173725151253241, 0.07130509939498704, 0.07130509939498704, 0.07044079515989628, 0.07000864304235091, 0.06957649092480553, 0.06957649092480553, 0.06914433880726016, 0.06957649092480553, 0.06871218668971478, 0.06914433880726016, 0.06957649092480553, 0.07044079515989628, 0.07303370786516854, 0.6171132238547969, 0.6261884183232498, 0.7324978392394123, 0.7765773552290406, 0.8076923076923077, 0.8318928262748487, 0.8552290406222991, 0.8751080380293863, 0.8941227312013829, 0.918323249783924, 0.9369057908383751, 0.9477095937770095, 0.9295592048401037, 0.9109766637856526, 0.8820224719101124, 0.867761452031115, 0.8435609334485739, 0.8193604148660328, 0.7947277441659464, 0.7519446845289542, 0.7130509939498704, 0.651685393258427, 0.6084701815038893, 0.5514261019878998, 0.4693171996542783, 0.39628349178910977, 0.34053586862575624, 0.2895419187554019, 0.2627484874675886, 0.24027657735522903, 0.19835782195332757, 0.17502160760587726, 0.1547104580812446, 0.11538461538461539, 0.09550561797752809, 0.08210890233362143, 0.0665514261019879, 0.060933448573898014, 0.05056179775280899, 0.044511668107173726, 0.04062229904926534, 0.038461538461538464, 0.032411408815903195, 0.030682800345721694, 0.02376836646499568, 0.01944684528954192, 0.016853932584269662, 0.015557476231633534, 0.01598962834917891, 0.013396715643906655, 0.013828867761452032, 0.010803802938634399, 0.011668107173725151, 0.010371650821089023, 0.010371650821089023, 0.012100259291270527, 0.012532411408815903, 0.7636127917026794, 0.0056179775280898875, 0.0056179775280898875, 0.005185825410544511, 0.005185825410544511, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.005185825410544511, 0.0056179775280898875, 0.005185825410544511, 0.006050129645635264, 0.006914433880726016, 0.007778738115816767, 0.009075194468452896, 0.010803802938634399, 0.011235955056179775, 0.7156439066551427, 0.04191875540190147, 0.03197925669835782, 0.03327571305099395, 0.02895419187554019, 0.027225583405358685, 0.028089887640449437, 0.028089887640449437, 0.028089887640449437, 0.02895419187554019, 0.030682800345721694, 0.03111495246326707, 0.031547104580812446, 0.03327571305099395, 0.032411408815903195, 0.032843560933448576, 0.035868625756266204, 0.3297320656871219, 0.44122731201382887, 0.5095073465859983, 0.5306828003457217, 0.5890233362143474, 0.6408815903197925, 0.7048401037165082, 0.757562662057044, 0.766637856525497, 0.7847882454624028, 0.797752808988764, 0.8085566119273985, 0.8267070008643043, 0.8591184096802075, 0.8742437337942955, 0.8993085566119274, 0.9062229904926534, 0.9235090751944685, 0.9438202247191011, 0.9472774416594641, 0.9295592048401037, 0.918323249783924, 0.9040622299049266, 0.8841832324978393, 0.865600691443388, 0.8396715643906655, 0.8159031979256698, 0.8033707865168539, 0.7955920484010371, 0.773552290406223, 0.759723422644771, 0.7467588591184097, 0.7104580812445981, 0.6763180639585133, 0.2748487467588591, 0.24027657735522903, 0.19878997407087295, 0.17502160760587726, 0.15643906655142611, 0.13785652549697494, 0.1240276577355229, 0.11365600691443388, 0.11106309420916162, 0.11063094209161625, 0.11106309420916162, 0.10717372515125324, 0.11106309420916162, 0.11538461538461539, 0.13267070008643042, 0.13526361279170268, 0.14606741573033707, 0.15038893690579083, 0.9498703543647364, 0.8975799481417459, 0.14304235090751943, 0.13353500432152118, 0.13526361279170268, 0.13612791702679344, 0.14995678478824545, 0.14174589455488332, 0.14001728608470182, 0.14304235090751943, 0.14736387208297322, 0.15384615384615385, 0.16378565254969749, 0.23163353500432152, 0.5531547104580813], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RED_C.gap.json b/pfam_gap_rates/RED_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65707ff9c1c7788787fe87936bae357387366702
--- /dev/null
+++ b/pfam_gap_rates/RED_C.gap.json
@@ -0,0 +1 @@
+{"family": "RED_C", "n_seqs": 131, "length": 115, "gap_rates": [0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.07633587786259542, 0.0916030534351145, 0.1984732824427481, 0.22137404580152673, 0.0916030534351145, 0.061068702290076333, 0.061068702290076333, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.061068702290076333, 0.10687022900763359, 0.05343511450381679, 0.05343511450381679, 0.061068702290076333, 0.05343511450381679, 0.04580152671755725, 0.03816793893129771, 0.015267175572519083, 0.022900763358778626, 0.030534351145038167, 0.030534351145038167, 0.7633587786259542, 0.030534351145038167, 0.03816793893129771, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.05343511450381679, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.04580152671755725, 0.05343511450381679, 0.03816793893129771, 0.04580152671755725, 0.04580152671755725, 0.03816793893129771, 0.8931297709923665, 0.9083969465648855, 0.9465648854961832, 0.9083969465648855, 0.7175572519083969, 0.31297709923664124, 0.3053435114503817, 0.26717557251908397, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.05343511450381679, 0.05343511450381679, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.0916030534351145, 0.0916030534351145, 0.12213740458015267, 0.15267175572519084, 0.20610687022900764, 0.26717557251908397, 0.40458015267175573, 0.5114503816793893, 0.6564885496183206], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RETICULATA-like.gap.json b/pfam_gap_rates/RETICULATA-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e56702641d398812c6d8211aa734774807703b5a
--- /dev/null
+++ b/pfam_gap_rates/RETICULATA-like.gap.json
@@ -0,0 +1 @@
+{"family": "RETICULATA-like", "n_seqs": 310, "length": 188, "gap_rates": [0.2709677419354839, 0.12903225806451613, 0.12580645161290321, 0.12580645161290321, 0.12580645161290321, 0.12258064516129032, 0.11935483870967742, 0.11935483870967742, 0.11935483870967742, 0.11935483870967742, 0.11935483870967742, 0.11935483870967742, 0.11935483870967742, 0.11612903225806452, 0.1064516129032258, 0.1064516129032258, 0.1064516129032258, 0.1064516129032258, 0.1064516129032258, 0.1064516129032258, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.09032258064516129, 0.09032258064516129, 0.09032258064516129, 0.09032258064516129, 0.09032258064516129, 0.08709677419354839, 0.08709677419354839, 0.08387096774193549, 0.08064516129032258, 0.08709677419354839, 0.08709677419354839, 0.08709677419354839, 0.09032258064516129, 0.09032258064516129, 0.08709677419354839, 0.08709677419354839, 0.08709677419354839, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08387096774193549, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.08064516129032258, 0.08709677419354839, 0.08709677419354839, 0.1032258064516129, 0.11612903225806452, 0.12258064516129032, 0.12903225806451613, 0.14838709677419354, 0.8483870967741935, 0.18387096774193548, 0.25806451612903225, 0.3967741935483871, 0.3935483870967742, 0.6451612903225806, 0.8387096774193549, 0.9225806451612903, 0.8483870967741935, 0.6645161290322581, 0.5870967741935483, 0.15483870967741936, 0.13870967741935483, 0.13548387096774195, 0.12580645161290321, 0.1064516129032258, 0.10967741935483871, 0.10967741935483871, 0.1032258064516129, 0.1032258064516129, 0.0967741935483871, 0.8741935483870967, 0.09032258064516129, 0.08387096774193549, 0.07741935483870968, 0.07741935483870968, 0.07741935483870968, 0.07741935483870968, 0.2806451612903226, 0.2806451612903226, 0.2806451612903226, 0.267741935483871, 0.9451612903225807, 0.1, 0.08709677419354839, 0.08709677419354839, 0.08709677419354839, 0.08709677419354839, 0.08387096774193549, 0.08064516129032258, 0.08064516129032258, 0.07741935483870968, 0.07741935483870968, 0.07741935483870968, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07741935483870968, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.07741935483870968, 0.07741935483870968, 0.07741935483870968, 0.07741935483870968, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.07741935483870968, 0.07419354838709677, 0.07419354838709677, 0.07419354838709677, 0.08064516129032258, 0.07741935483870968, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.09032258064516129, 0.0967741935483871, 0.24516129032258063, 0.24516129032258063, 0.24516129032258063, 0.2870967741935484, 0.23225806451612904, 0.2064516129032258, 0.8741935483870967, 0.8419354838709677, 0.1064516129032258, 0.0967741935483871, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0967741935483871, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.1, 0.1, 0.11612903225806452, 0.2064516129032258], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RFX_DNA_binding.gap.json b/pfam_gap_rates/RFX_DNA_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58508901f27cd60046fbe3f590e786fa897d688b
--- /dev/null
+++ b/pfam_gap_rates/RFX_DNA_binding.gap.json
@@ -0,0 +1 @@
+{"family": "RFX_DNA_binding", "n_seqs": 505, "length": 80, "gap_rates": [0.8930693069306931, 0.6297029702970297, 0.3089108910891089, 0.17623762376237623, 0.1188118811881188, 0.10297029702970296, 0.09702970297029703, 0.06732673267326733, 0.061386138613861385, 0.05742574257425743, 0.05742574257425743, 0.055445544554455446, 0.053465346534653464, 0.05148514851485148, 0.04950495049504951, 0.039603960396039604, 0.1504950495049505, 0.0297029702970297, 0.027722772277227723, 0.02574257425742574, 0.023762376237623763, 0.023762376237623763, 0.023762376237623763, 0.023762376237623763, 0.02178217821782178, 0.02178217821782178, 0.023762376237623763, 0.023762376237623763, 0.023762376237623763, 0.023762376237623763, 0.02178217821782178, 0.02178217821782178, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.02178217821782178, 0.01782178217821782, 0.01782178217821782, 0.8752475247524752, 0.011881188118811881, 0.011881188118811881, 0.011881188118811881, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.007920792079207921, 0.009900990099009901, 0.013861386138613862, 0.023762376237623763, 0.027722772277227723, 0.027722772277227723, 0.027722772277227723, 0.0297029702970297, 0.031683168316831684, 0.03762376237623762, 0.04554455445544554, 0.055445544554455446, 0.06534653465346535, 0.06732673267326733, 0.06732673267326733, 0.06732673267326733, 0.07722772277227723, 0.9485148514851485, 0.07524752475247524, 0.07524752475247524, 0.08712871287128712, 0.09108910891089109, 0.09900990099009901, 0.10495049504950495, 0.11089108910891089, 0.11683168316831684, 0.12079207920792079, 0.12079207920792079, 0.12079207920792079, 0.12079207920792079, 0.13465346534653466, 0.18613861386138614, 0.3920792079207921], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RIG-I_C-RD.gap.json b/pfam_gap_rates/RIG-I_C-RD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a3cc76bf59ad262a58b2f8b43f1317738eeddf1
--- /dev/null
+++ b/pfam_gap_rates/RIG-I_C-RD.gap.json
@@ -0,0 +1 @@
+{"family": "RIG-I_C-RD", "n_seqs": 119, "length": 131, "gap_rates": [0.6974789915966386, 0.18487394957983194, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.08403361344537816, 0.03361344537815126, 0.06722689075630252, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.025210084033613446, 0.025210084033613446, 0.03361344537815126, 0.9327731092436975, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.058823529411764705, 0.06722689075630252, 0.9327731092436975, 0.7058823529411765, 0.46218487394957986, 0.18487394957983194, 0.10084033613445378, 0.1092436974789916, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.08403361344537816, 0.08403361344537816, 0.7815126050420168, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.8991596638655462, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.08403361344537816, 0.7226890756302521, 0.8991596638655462, 0.907563025210084, 0.8991596638655462, 0.7226890756302521, 0.19327731092436976, 0.08403361344537816, 0.08403361344537816, 0.08403361344537816, 0.09243697478991597, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.9159663865546218, 0.10084033613445378, 0.10084033613445378, 0.1092436974789916, 0.1092436974789916, 0.1092436974789916, 0.1092436974789916, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.19327731092436976, 0.14285714285714285, 0.19327731092436976, 0.8739495798319328, 0.9495798319327731, 0.7983193277310925, 0.5714285714285714, 0.13445378151260504, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.12605042016806722, 0.14285714285714285, 0.15126050420168066, 0.17647058823529413, 0.17647058823529413, 0.23529411764705882, 0.2605042016806723, 0.3445378151260504, 0.42016806722689076, 0.48739495798319327, 0.5378151260504201, 0.5798319327731093, 0.8571428571428571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RIX1.gap.json b/pfam_gap_rates/RIX1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce9b5d60a01ae3e887915e7db402833955e6c161
--- /dev/null
+++ b/pfam_gap_rates/RIX1.gap.json
@@ -0,0 +1 @@
+{"family": "RIX1", "n_seqs": 202, "length": 236, "gap_rates": [0.8762376237623762, 0.6188118811881188, 0.5099009900990099, 0.4306930693069307, 0.400990099009901, 0.3811881188118812, 0.37623762376237624, 0.3613861386138614, 0.35148514851485146, 0.33663366336633666, 0.3316831683168317, 0.33663366336633666, 0.7178217821782178, 0.8910891089108911, 0.9207920792079208, 0.9257425742574258, 0.9306930693069307, 0.9257425742574258, 0.905940594059406, 0.8861386138613861, 0.698019801980198, 0.32673267326732675, 0.2871287128712871, 0.25742574257425743, 0.24752475247524752, 0.24257425742574257, 0.24257425742574257, 0.22277227722772278, 0.22277227722772278, 0.22277227722772278, 0.21782178217821782, 0.21287128712871287, 0.21287128712871287, 0.20297029702970298, 0.20297029702970298, 0.2079207920792079, 0.19801980198019803, 0.20297029702970298, 0.19801980198019803, 0.23267326732673269, 0.20297029702970298, 0.20297029702970298, 0.2079207920792079, 0.20297029702970298, 0.2079207920792079, 0.33663366336633666, 0.31683168316831684, 0.35148514851485146, 0.3465346534653465, 0.31683168316831684, 0.5148514851485149, 0.5297029702970297, 0.5643564356435643, 0.698019801980198, 0.7623762376237624, 0.7128712871287128, 0.6435643564356436, 0.5346534653465347, 0.5198019801980198, 0.504950495049505, 0.4504950495049505, 0.41089108910891087, 0.3811881188118812, 0.3564356435643564, 0.2722772277227723, 0.1485148514851485, 0.14356435643564355, 0.13861386138613863, 0.13861386138613863, 0.13366336633663367, 0.13366336633663367, 0.13366336633663367, 0.12871287128712872, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.11386138613861387, 0.21287128712871287, 0.22772277227722773, 0.12871287128712872, 0.11386138613861387, 0.11386138613861387, 0.10396039603960396, 0.09405940594059406, 0.09405940594059406, 0.09405940594059406, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.13861386138613863, 0.08415841584158416, 0.08415841584158416, 0.6633663366336634, 0.08415841584158416, 0.07920792079207921, 0.06435643564356436, 0.06435643564356436, 0.0594059405940594, 0.0594059405940594, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.06435643564356436, 0.06435643564356436, 0.06435643564356436, 0.06435643564356436, 0.06435643564356436, 0.06435643564356436, 0.06435643564356436, 0.06930693069306931, 0.06930693069306931, 0.06435643564356436, 0.07425742574257425, 0.8465346534653465, 0.8861386138613861, 0.8960396039603961, 0.8960396039603961, 0.9405940594059405, 0.9207920792079208, 0.8960396039603961, 0.8960396039603961, 0.8712871287128713, 0.6831683168316832, 0.09405940594059406, 0.08415841584158416, 0.9405940594059405, 0.9207920792079208, 0.06930693069306931, 0.0594059405940594, 0.054455445544554455, 0.054455445544554455, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.034653465346534656, 0.034653465346534656, 0.034653465346534656, 0.0297029702970297, 0.034653465346534656, 0.034653465346534656, 0.034653465346534656, 0.039603960396039604, 0.034653465346534656, 0.034653465346534656, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.21782178217821782, 0.034653465346534656, 0.034653465346534656, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.04950495049504951, 0.04455445544554455, 0.9356435643564357, 0.48514851485148514, 0.21782178217821782, 0.35148514851485146, 0.5693069306930693, 0.6881188118811881, 0.7227722772277227, 0.7524752475247525, 0.8960396039603961, 0.9108910891089109, 0.8465346534653465, 0.7326732673267327, 0.7029702970297029, 0.6584158415841584, 0.3811881188118812, 0.28217821782178215, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.0594059405940594, 0.054455445544554455, 0.0594059405940594, 0.06435643564356436, 0.06435643564356436, 0.06435643564356436, 0.07425742574257425, 0.07425742574257425, 0.07425742574257425, 0.07920792079207921, 0.08415841584158416, 0.0891089108910891, 0.09405940594059406, 0.09405940594059406, 0.12376237623762376, 0.16336633663366337, 0.22277227722772278, 0.35148514851485146, 0.4752475247524752, 0.7475247524752475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_Me_trans.gap.json b/pfam_gap_rates/RNA_Me_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b1fbdc7224712c8251299eea439092aa75a7d3e
--- /dev/null
+++ b/pfam_gap_rates/RNA_Me_trans.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_Me_trans", "n_seqs": 171, "length": 240, "gap_rates": [0.6140350877192983, 0.23391812865497075, 0.21637426900584794, 0.19298245614035087, 0.19298245614035087, 0.19298245614035087, 0.19298245614035087, 0.19298245614035087, 0.22807017543859648, 0.18128654970760233, 0.15204678362573099, 0.8128654970760234, 0.8128654970760234, 0.8362573099415205, 0.8245614035087719, 0.8128654970760234, 0.8011695906432749, 0.14619883040935672, 0.14619883040935672, 0.14619883040935672, 0.14619883040935672, 0.14619883040935672, 0.14619883040935672, 0.14619883040935672, 0.13450292397660818, 0.13450292397660818, 0.13450292397660818, 0.13450292397660818, 0.13450292397660818, 0.13450292397660818, 0.13450292397660818, 0.13450292397660818, 0.1695906432748538, 0.14619883040935672, 0.1286549707602339, 0.7426900584795322, 0.5672514619883041, 0.1286549707602339, 0.8421052631578947, 0.9415204678362573, 0.9473684210526315, 0.935672514619883, 0.8362573099415205, 0.12280701754385964, 0.12280701754385964, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_ligase.gap.json b/pfam_gap_rates/RNA_ligase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d24f12b5778daf33d4de7c652fb922b4897cfad
--- /dev/null
+++ b/pfam_gap_rates/RNA_ligase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol.gap.json b/pfam_gap_rates/RNA_pol.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e932028e33b7872075d35922a90bbb67cd5da16d
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb2_45.gap.json b/pfam_gap_rates/RNA_pol_Rpb2_45.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f058cfe59870f644d3647b149e831ac78361110e
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb2_45.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb2_45", "n_seqs": 2200, "length": 77, "gap_rates": [0.09363636363636364, 0.07681818181818181, 0.06272727272727273, 0.04863636363636364, 0.046363636363636364, 0.7695454545454545, 0.8054545454545454, 0.057272727272727274, 0.038181818181818185, 0.9354545454545454, 0.9459090909090909, 0.9490909090909091, 0.9418181818181818, 0.935, 0.020454545454545454, 0.011818181818181818, 0.9081818181818182, 0.8954545454545455, 0.008181818181818182, 0.007272727272727273, 0.005909090909090909, 0.005, 0.004545454545454545, 0.0018181818181818182, 0.0009090909090909091, 0.0009090909090909091, 0.0009090909090909091, 0.0009090909090909091, 0.0009090909090909091, 0.0009090909090909091, 0.00045454545454545455, 0.00045454545454545455, 0.00045454545454545455, 0.00045454545454545455, 0.00045454545454545455, 0.00045454545454545455, 0.00045454545454545455, 0.0018181818181818182, 0.00045454545454545455, 0.0009090909090909091, 0.004090909090909091, 0.0027272727272727275, 0.010454545454545454, 0.014545454545454545, 0.0036363636363636364, 0.004545454545454545, 0.0022727272727272726, 0.0018181818181818182, 0.0022727272727272726, 0.005909090909090909, 0.0036363636363636364, 0.0009090909090909091, 0.0009090909090909091, 0.0013636363636363637, 0.0009090909090909091, 0.0009090909090909091, 0.9086363636363637, 0.0009090909090909091, 0.0018181818181818182, 0.9468181818181818, 0.0009090909090909091, 0.0009090909090909091, 0.0009090909090909091, 0.0018181818181818182, 0.0018181818181818182, 0.0027272727272727275, 0.0027272727272727275, 0.003181818181818182, 0.004090909090909091, 0.005454545454545455, 0.005454545454545455, 0.005909090909090909, 0.005909090909090909, 0.006363636363636364, 0.006818181818181818, 0.023181818181818182, 0.06681818181818182], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb5_C.gap.json b/pfam_gap_rates/RNA_pol_Rpb5_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dcf8450b08469ff611b8a900ea99091e928e305a
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb5_C.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb5_C", "n_seqs": 530, "length": 73, "gap_rates": [0.12830188679245283, 0.08490566037735849, 0.06037735849056604, 0.0509433962264151, 0.04716981132075472, 0.045283018867924525, 0.04339622641509434, 0.033962264150943396, 0.03207547169811321, 0.03207547169811321, 0.03207547169811321, 0.03207547169811321, 0.03207547169811321, 0.03207547169811321, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.03207547169811321, 0.035849056603773584, 0.03207547169811321, 0.03207547169811321, 0.03962264150943396, 0.033962264150943396, 0.03773584905660377, 0.033962264150943396, 0.03018867924528302, 0.026415094339622643, 0.026415094339622643, 0.03962264150943396, 0.04339622641509434, 0.045283018867924525, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.045283018867924525, 0.045283018867924525, 0.045283018867924525, 0.04716981132075472, 0.07358490566037736, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.052830188679245285, 0.05471698113207547, 0.05849056603773585, 0.06415094339622641, 0.06415094339622641, 0.06415094339622641, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.06981132075471698, 0.07547169811320754, 0.07547169811320754, 0.07924528301886792, 0.07735849056603773, 0.07924528301886792, 0.07735849056603773, 0.07924528301886792, 0.0830188679245283, 0.08490566037735849, 0.08867924528301886, 0.09811320754716982, 0.17547169811320754], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpc4.gap.json b/pfam_gap_rates/RNA_pol_Rpc4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74a3076e1a857df737da31f610ffb5a80916d4dc
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpc4.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpc4", "n_seqs": 345, "length": 183, "gap_rates": [0.7304347826086957, 0.5130434782608696, 0.4057971014492754, 0.34492753623188405, 0.32753623188405795, 0.3217391304347826, 0.3072463768115942, 0.3072463768115942, 0.30144927536231886, 0.2985507246376812, 0.2985507246376812, 0.30144927536231886, 0.2985507246376812, 0.2956521739130435, 0.2956521739130435, 0.39710144927536234, 0.34202898550724636, 0.8115942028985508, 0.881159420289855, 0.9014492753623189, 0.9188405797101449, 0.9333333333333333, 0.9478260869565217, 0.9391304347826087, 0.9246376811594202, 0.9101449275362319, 0.8869565217391304, 0.8724637681159421, 0.7971014492753623, 0.808695652173913, 0.7884057971014493, 0.7507246376811594, 0.7130434782608696, 0.6898550724637681, 0.6434782608695652, 0.6144927536231884, 0.591304347826087, 0.5710144927536231, 0.5594202898550724, 0.5565217391304348, 0.518840579710145, 0.45217391304347826, 0.47246376811594204, 0.48985507246376814, 0.46956521739130436, 0.4405797101449275, 0.4405797101449275, 0.4115942028985507, 0.4057971014492754, 0.4115942028985507, 0.3884057971014493, 0.3681159420289855, 0.35942028985507246, 0.36231884057971014, 0.3826086956521739, 0.37681159420289856, 0.4, 0.3826086956521739, 0.34782608695652173, 0.336231884057971, 0.32753623188405795, 0.32753623188405795, 0.33043478260869563, 0.3188405797101449, 0.33043478260869563, 0.3826086956521739, 0.3681159420289855, 0.35942028985507246, 0.3536231884057971, 0.34202898550724636, 0.3884057971014493, 0.36231884057971014, 0.34202898550724636, 0.3217391304347826, 0.3072463768115942, 0.263768115942029, 0.22318840579710145, 0.2, 0.1826086956521739, 0.17391304347826086, 0.15072463768115943, 0.1391304347826087, 0.11014492753623188, 0.09565217391304348, 0.08405797101449275, 0.0782608695652174, 0.08405797101449275, 0.07246376811594203, 0.06666666666666667, 0.07246376811594203, 0.06666666666666667, 0.043478260869565216, 0.9217391304347826, 0.936231884057971, 0.9449275362318841, 0.9333333333333333, 0.9159420289855073, 0.028985507246376812, 0.02608695652173913, 0.020289855072463767, 0.020289855072463767, 0.02318840579710145, 0.020289855072463767, 0.020289855072463767, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.014492753623188406, 0.014492753623188406, 0.011594202898550725, 0.008695652173913044, 0.008695652173913044, 0.011594202898550725, 0.017391304347826087, 0.017391304347826087, 0.8434782608695652, 0.020289855072463767, 0.02318840579710145, 0.020289855072463767, 0.020289855072463767, 0.020289855072463767, 0.02318840579710145, 0.02608695652173913, 0.03188405797101449, 0.028985507246376812, 0.028985507246376812, 0.034782608695652174, 0.03188405797101449, 0.034782608695652174, 0.03188405797101449, 0.03188405797101449, 0.03768115942028986, 0.0463768115942029, 0.04927536231884058, 0.05217391304347826, 0.05507246376811594, 0.057971014492753624, 0.08115942028985507, 0.9304347826086956, 0.11304347826086956, 0.5768115942028985, 0.5565217391304348, 0.5246376811594203, 0.7130434782608696, 0.7391304347826086, 0.7739130434782608, 0.863768115942029, 0.8782608695652174, 0.8985507246376812, 0.9072463768115943, 0.9304347826086956, 0.9420289855072463, 0.936231884057971, 0.9188405797101449, 0.9072463768115943, 0.8840579710144928, 0.8695652173913043, 0.8289855072463768, 0.7507246376811594, 0.736231884057971, 0.6927536231884058, 0.07536231884057971, 0.0927536231884058, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.07246376811594203, 0.07536231884057971, 0.07536231884057971, 0.07536231884057971, 0.07536231884057971, 0.07536231884057971, 0.08405797101449275, 0.08695652173913043, 0.08985507246376812, 0.09855072463768116, 0.11014492753623188, 0.12753623188405797, 0.3130434782608696], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpc82.gap.json b/pfam_gap_rates/RNA_pol_Rpc82.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..368af7a0c0ce4af8ae7cbe400524f24d7d631183
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpc82.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpc82", "n_seqs": 257, "length": 400, "gap_rates": [0.8910505836575876, 0.49416342412451364, 0.3657587548638132, 0.3346303501945525, 0.3035019455252918, 0.29571984435797666, 0.2918287937743191, 0.2918287937743191, 0.28793774319066145, 0.2840466926070039, 0.2840466926070039, 0.2840466926070039, 0.2840466926070039, 0.2801556420233463, 0.2801556420233463, 0.2801556420233463, 0.27626459143968873, 0.5291828793774319, 0.5252918287937743, 0.5252918287937743, 0.5214007782101168, 0.38132295719844356, 0.38132295719844356, 0.38132295719844356, 0.38132295719844356, 0.38132295719844356, 0.38132295719844356, 0.3852140077821012, 0.3735408560311284, 0.35019455252918286, 0.35019455252918286, 0.3035019455252918, 0.3035019455252918, 0.30739299610894943, 0.29961089494163423, 0.29961089494163423, 0.29961089494163423, 0.29961089494163423, 0.3346303501945525, 0.6614785992217899, 0.48638132295719844, 0.4474708171206226, 0.33852140077821014, 0.29961089494163423, 0.2840466926070039, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RNR_N.gap.json b/pfam_gap_rates/RNR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d57e36b78915008e1a49d24f69a73f97f10828d
--- /dev/null
+++ b/pfam_gap_rates/RNR_N.gap.json
@@ -0,0 +1 @@
+{"family": "RNR_N", "n_seqs": 346, "length": 82, "gap_rates": [0.1069364161849711, 0.10404624277456648, 0.10115606936416185, 0.09248554913294797, 0.09248554913294797, 0.09248554913294797, 0.03468208092485549, 0.03757225433526012, 0.049132947976878616, 0.049132947976878616, 0.04335260115606936, 0.03757225433526012, 0.3930635838150289, 0.04335260115606936, 0.03468208092485549, 0.03468208092485549, 0.03468208092485549, 0.031791907514450865, 0.031791907514450865, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.02601156069364162, 0.02601156069364162, 0.02601156069364162, 0.04046242774566474, 0.02601156069364162, 0.02023121387283237, 0.0838150289017341, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.008670520231213872, 0.008670520231213872, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002890173410404624, 0.02601156069364162, 0.07514450867052024, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.008670520231213872, 0.011560693641618497, 0.02601156069364162, 0.031791907514450865, 0.03757225433526012], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_P_Rpp14.gap.json b/pfam_gap_rates/RNase_P_Rpp14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ad110c6faa16b6f2076d54f6c1c5aef0d77992b
--- /dev/null
+++ b/pfam_gap_rates/RNase_P_Rpp14.gap.json
@@ -0,0 +1 @@
+{"family": "RNase_P_Rpp14", "n_seqs": 397, "length": 137, "gap_rates": [0.22921914357682618, 0.163727959697733, 0.15869017632241814, 0.15869017632241814, 0.15113350125944586, 0.14609571788413098, 0.14105793450881612, 0.14105793450881612, 0.14105793450881612, 0.14105793450881612, 0.14105793450881612, 0.25692695214105793, 0.8387909319899244, 0.947103274559194, 0.801007556675063, 0.30982367758186397, 0.28967254408060455, 0.5415617128463476, 0.6246851385390428, 0.6775818639798489, 0.743073047858942, 0.7531486146095718, 0.7682619647355163, 0.7959697732997482, 0.8110831234256927, 0.8387909319899244, 0.8916876574307305, 0.9193954659949622, 0.947103274559194, 0.9496221662468514, 0.9370277078085643, 0.906801007556675, 0.8513853904282116, 0.8211586901763224, 0.801007556675063, 0.7934508816120907, 0.7556675062972292, 0.7481108312342569, 0.690176322418136, 0.6649874055415617, 0.5692695214105793, 0.5113350125944585, 0.163727959697733, 0.929471032745592, 0.11083123425692695, 0.07808564231738035, 0.05793450881612091, 0.04785894206549118, 0.042821158690176324, 0.04030226700251889, 0.04030226700251889, 0.04030226700251889, 0.03526448362720403, 0.03526448362720403, 0.0327455919395466, 0.0327455919395466, 0.0327455919395466, 0.0327455919395466, 0.030226700251889168, 0.030226700251889168, 0.030226700251889168, 0.030226700251889168, 0.030226700251889168, 0.030226700251889168, 0.030226700251889168, 0.027707808564231738, 0.042821158690176324, 0.03526448362720403, 0.03526448362720403, 0.037783375314861464, 0.04534005037783375, 0.04785894206549118, 0.31738035264483627, 0.2518891687657431, 0.11838790931989925, 0.04785894206549118, 0.037783375314861464, 0.03526448362720403, 0.027707808564231738, 0.027707808564231738, 0.03526448362720403, 0.10075566750629723, 0.08312342569269521, 0.02518891687657431, 0.02518891687657431, 0.022670025188916875, 0.022670025188916875, 0.020151133501259445, 0.020151133501259445, 0.022670025188916875, 0.020151133501259445, 0.017632241813602016, 0.017632241813602016, 0.017632241813602016, 0.017632241813602016, 0.020151133501259445, 0.020151133501259445, 0.020151133501259445, 0.022670025188916875, 0.022670025188916875, 0.022670025188916875, 0.022670025188916875, 0.022670025188916875, 0.022670025188916875, 0.020151133501259445, 0.020151133501259445, 0.020151133501259445, 0.02518891687657431, 0.7959697732997482, 0.8841309823677582, 0.9395465994962217, 0.7984886649874056, 0.7732997481108312, 0.030226700251889168, 0.030226700251889168, 0.030226700251889168, 0.027707808564231738, 0.027707808564231738, 0.027707808564231738, 0.027707808564231738, 0.027707808564231738, 0.027707808564231738, 0.0327455919395466, 0.04030226700251889, 0.04785894206549118, 0.060453400503778336, 0.12342569269521411, 0.1385390428211587, 0.14609571788413098, 0.163727959697733, 0.16876574307304787, 0.17632241813602015, 0.19143576826196473, 0.22670025188916876, 0.26448362720403024, 0.3602015113350126, 0.6272040302267002], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RPA.gap.json b/pfam_gap_rates/RPA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9be68ecca2bfdc34ba079e5daaa6fb0d48744b10
--- /dev/null
+++ b/pfam_gap_rates/RPA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RPN7.gap.json b/pfam_gap_rates/RPN7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54f48fb76245429851016c0552d9d2591d16103d
--- /dev/null
+++ b/pfam_gap_rates/RPN7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RPOL_N.gap.json b/pfam_gap_rates/RPOL_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f8e221aca08534cd9007d6b9200cae767db97c4
--- /dev/null
+++ b/pfam_gap_rates/RPOL_N.gap.json
@@ -0,0 +1 @@
+{"family": "RPOL_N", "n_seqs": 386, "length": 390, "gap_rates": [0.4792746113989637, 0.39378238341968913, 0.38341968911917096, 0.3756476683937824, 0.36787564766839376, 0.36787564766839376, 0.36787564766839376, 0.3626943005181347, 0.3601036269430052, 0.3601036269430052, 0.3601036269430052, 0.3549222797927461, 0.3549222797927461, 0.3471502590673575, 0.3471502590673575, 0.34974093264248707, 0.34974093264248707, 0.3471502590673575, 0.3471502590673575, 0.34196891191709844, 0.34196891191709844, 0.33678756476683935, 0.3316062176165803, 0.32642487046632124, 0.32642487046632124, 0.35751295336787564, 0.35233160621761656, 0.3549222797927461, 0.35233160621761656, 0.39896373056994816, 0.9093264248704663, 0.3290155440414508, 0.32124352331606215, 0.31088082901554404, 0.3756476683937824, 0.5984455958549223, 0.5647668393782384, 0.2538860103626943, 0.24870466321243523, 0.24611398963730569, 0.24611398963730569, 0.24352331606217617, 0.23575129533678757, 0.23056994818652848, 0.22797927461139897, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RRM_2.gap.json b/pfam_gap_rates/RRM_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49915d9f6a415e6ab6b846c49d6487c8e3f39afb
--- /dev/null
+++ b/pfam_gap_rates/RRM_2.gap.json
@@ -0,0 +1 @@
+{"family": "RRM_2", "n_seqs": 502, "length": 110, "gap_rates": [0.2948207171314741, 0.1593625498007968, 0.14940239043824702, 0.14741035856573706, 0.12350597609561753, 0.12151394422310757, 0.11952191235059761, 0.11553784860557768, 0.11553784860557768, 0.11553784860557768, 0.11354581673306773, 0.10956175298804781, 0.10756972111553785, 0.10756972111553785, 0.10756972111553785, 0.10756972111553785, 0.10557768924302789, 0.10159362549800798, 0.10159362549800798, 0.10159362549800798, 0.09561752988047809, 0.09561752988047809, 0.08964143426294821, 0.08764940239043825, 0.08167330677290836, 0.9402390438247012, 0.07370517928286853, 0.8924302788844621, 0.8944223107569721, 0.9402390438247012, 0.9482071713147411, 0.9302788844621513, 0.8944223107569721, 0.8804780876494024, 0.06573705179282868, 0.9322709163346613, 0.9402390438247012, 0.9402390438247012, 0.9382470119521913, 0.9302788844621513, 0.05976095617529881, 0.04780876494023904, 0.04183266932270916, 0.04183266932270916, 0.043824701195219126, 0.045816733067729085, 0.043824701195219126, 0.04183266932270916, 0.037848605577689244, 0.04183266932270916, 0.043824701195219126, 0.05179282868525897, 0.05179282868525897, 0.05179282868525897, 0.053784860557768925, 0.049800796812749, 0.05179282868525897, 0.053784860557768925, 0.053784860557768925, 0.053784860557768925, 0.05776892430278884, 0.05976095617529881, 0.05976095617529881, 0.061752988047808766, 0.061752988047808766, 0.061752988047808766, 0.0697211155378486, 0.07569721115537849, 0.07768924302788845, 0.08167330677290836, 0.08167330677290836, 0.08167330677290836, 0.07569721115537849, 0.06573705179282868, 0.0697211155378486, 0.07370517928286853, 0.07569721115537849, 0.07768924302788845, 0.0796812749003984, 0.08565737051792828, 0.08964143426294821, 0.10159362549800798, 0.10557768924302789, 0.10159362549800798, 0.10756972111553785, 0.11553784860557768, 0.11952191235059761, 0.11155378486055777, 0.10557768924302789, 0.10557768924302789, 0.10756972111553785, 0.10557768924302789, 0.10557768924302789, 0.10557768924302789, 0.10557768924302789, 0.10756972111553785, 0.10956175298804781, 0.10956175298804781, 0.11354581673306773, 0.11752988047808766, 0.1254980079681275, 0.13346613545816732, 0.1394422310756972, 0.16334661354581673, 0.17131474103585656, 0.18127490039840638, 0.19123505976095617, 0.21115537848605578, 0.2410358565737052, 0.36852589641434264], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RRXRR.gap.json b/pfam_gap_rates/RRXRR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..259ab33c1abdd30b59431e87be4ded087546aa29
--- /dev/null
+++ b/pfam_gap_rates/RRXRR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RTC.gap.json b/pfam_gap_rates/RTC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4797e89a20b10ab518d8a6472b3cdfc2cbd59fe0
--- /dev/null
+++ b/pfam_gap_rates/RTC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RTC4.gap.json b/pfam_gap_rates/RTC4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7dbe137940badb857226b250197ff7231ab4244
--- /dev/null
+++ b/pfam_gap_rates/RTC4.gap.json
@@ -0,0 +1 @@
+{"family": "RTC4", "n_seqs": 168, "length": 136, "gap_rates": [0.7738095238095238, 0.5416666666666666, 0.4226190476190476, 0.2976190476190476, 0.2619047619047619, 0.24404761904761904, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23214285714285715, 0.20833333333333334, 0.20238095238095238, 0.20238095238095238, 0.18452380952380953, 0.17857142857142858, 0.16666666666666666, 0.16666666666666666, 0.21428571428571427, 0.16666666666666666, 0.17261904761904762, 0.9107142857142857, 0.20238095238095238, 0.16666666666666666, 0.15476190476190477, 0.1488095238095238, 0.14285714285714285, 0.1488095238095238, 0.35714285714285715, 0.3273809523809524, 0.32142857142857145, 0.30952380952380953, 0.2976190476190476, 0.30357142857142855, 0.15476190476190477, 0.07142857142857142, 0.06547619047619048, 0.05952380952380952, 0.05357142857142857, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.041666666666666664, 0.03571428571428571, 0.041666666666666664, 0.03571428571428571, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.02976190476190476, 0.9345238095238095, 0.8214285714285714, 0.17857142857142858, 0.15476190476190477, 0.16071428571428573, 0.10714285714285714, 0.10119047619047619, 0.125, 0.32142857142857145, 0.25595238095238093, 0.1130952380952381, 0.10714285714285714, 0.1130952380952381, 0.1130952380952381, 0.22023809523809523, 0.1488095238095238, 0.10714285714285714, 0.08928571428571429, 0.06547619047619048, 0.9166666666666666, 0.9464285714285714, 0.9345238095238095, 0.9166666666666666, 0.041666666666666664, 0.041666666666666664, 0.02976190476190476, 0.02976190476190476, 0.02976190476190476, 0.017857142857142856, 0.017857142857142856, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.023809523809523808, 0.03571428571428571, 0.03571428571428571, 0.7619047619047619, 0.8452380952380952, 0.9226190476190477, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.9107142857142857, 0.8214285714285714, 0.6726190476190477, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.047619047619047616, 0.047619047619047616, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.08928571428571429, 0.1488095238095238, 0.18452380952380953, 0.2261904761904762, 0.6904761904761905], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RTT107_BRCT_5.gap.json b/pfam_gap_rates/RTT107_BRCT_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e80eb6c5bff039715fa36f6b5c8ff6e460b65af8
--- /dev/null
+++ b/pfam_gap_rates/RTT107_BRCT_5.gap.json
@@ -0,0 +1 @@
+{"family": "RTT107_BRCT_5", "n_seqs": 355, "length": 108, "gap_rates": [0.9042253521126761, 0.8225352112676056, 0.7718309859154929, 0.7126760563380282, 0.6591549295774648, 0.6309859154929578, 0.5915492957746479, 0.5295774647887324, 0.4732394366197183, 0.4422535211267606, 0.4140845070422535, 0.38309859154929576, 0.3492957746478873, 0.3267605633802817, 0.29859154929577464, 0.2563380281690141, 0.23098591549295774, 0.19718309859154928, 0.15211267605633802, 0.1295774647887324, 0.11549295774647887, 0.10422535211267606, 0.10422535211267606, 0.09859154929577464, 0.11549295774647887, 0.17464788732394365, 0.2084507042253521, 0.647887323943662, 0.6563380281690141, 0.8028169014084507, 0.8112676056338028, 0.7887323943661971, 0.23661971830985915, 0.2, 0.1295774647887324, 0.05352112676056338, 0.04225352112676056, 0.03380281690140845, 0.030985915492957747, 0.028169014084507043, 0.022535211267605635, 0.022535211267605635, 0.01971830985915493, 0.016901408450704224, 0.016901408450704224, 0.016901408450704224, 0.016901408450704224, 0.014084507042253521, 0.014084507042253521, 0.016901408450704224, 0.8507042253521127, 0.9183098591549296, 0.819718309859155, 0.011267605633802818, 0.011267605633802818, 0.008450704225352112, 0.005633802816901409, 0.8788732394366198, 0.0028169014084507044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.005633802816901409, 0.005633802816901409, 0.005633802816901409, 0.005633802816901409, 0.005633802816901409, 0.005633802816901409, 0.008450704225352112, 0.016901408450704224, 0.03380281690140845, 0.036619718309859155, 0.9464788732394366, 0.9436619718309859, 0.04225352112676056, 0.09014084507042254, 0.10140845070422536, 0.10140845070422536, 0.12112676056338029, 0.1295774647887324, 0.16056338028169015, 0.16338028169014085, 0.17464788732394365, 0.2, 0.3971830985915493, 0.5859154929577465], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RVT_3.gap.json b/pfam_gap_rates/RVT_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd668e0e0b375f1d1dcf07c6a3ca8eee10bf465d
--- /dev/null
+++ b/pfam_gap_rates/RVT_3.gap.json
@@ -0,0 +1 @@
+{"family": "RVT_3", "n_seqs": 2448, "length": 129, "gap_rates": [0.8562091503267973, 0.5608660130718954, 0.42320261437908496, 0.41544117647058826, 0.5126633986928104, 0.5212418300653595, 0.4477124183006536, 0.39133986928104575, 0.34354575163398693, 0.32230392156862747, 0.30800653594771243, 0.29411764705882354, 0.3104575163398693, 0.2679738562091503, 0.25857843137254904, 0.25163398692810457, 0.2455065359477124, 0.23937908496732027, 0.2361111111111111, 0.23529411764705882, 0.24183006535947713, 0.26429738562091504, 0.9448529411764706, 0.22916666666666666, 0.21854575163398693, 0.24632352941176472, 0.2128267973856209, 0.2079248366013072, 0.20098039215686275, 0.19975490196078433, 0.19240196078431374, 0.18668300653594772, 0.28227124183006536, 0.23815359477124182, 0.9166666666666666, 0.44362745098039214, 0.17851307189542484, 0.176062091503268, 0.12336601307189543, 0.11274509803921569, 0.09558823529411764, 0.09068627450980392, 0.09027777777777778, 0.08088235294117647, 0.07761437908496732, 0.0763888888888889, 0.0755718954248366, 0.07230392156862746, 0.07107843137254902, 0.07026143790849673, 0.06985294117647059, 0.06740196078431372, 0.0661764705882353, 0.06454248366013073, 0.06454248366013073, 0.059640522875817, 0.06045751633986928, 0.05923202614379085, 0.05718954248366013, 0.053513071895424834, 0.05514705882352941, 0.05106209150326797, 0.051470588235294115, 0.05228758169934641, 0.9391339869281046, 0.9097222222222222, 0.05106209150326797, 0.05106209150326797, 0.0494281045751634, 0.049836601307189546, 0.05106209150326797, 0.05228758169934641, 0.053513071895424834, 0.05718954248366013, 0.059640522875817, 0.06209150326797386, 0.06413398692810457, 0.06699346405228758, 0.06944444444444445, 0.07516339869281045, 0.08333333333333333, 0.08741830065359477, 0.10620915032679738, 0.1270424836601307, 0.184640522875817, 0.43709150326797386, 0.16380718954248366, 0.14950980392156862, 0.1437908496732026, 0.14665032679738563, 0.14583333333333334, 0.14705882352941177, 0.14950980392156862, 0.15236928104575165, 0.15318627450980393, 0.15522875816993464, 0.15890522875816993, 0.16094771241830066, 0.16462418300653595, 0.16830065359477125, 0.17116013071895425, 0.17483660130718953, 0.18055555555555555, 0.18872549019607843, 0.1940359477124183, 0.9419934640522876, 0.23161764705882354, 0.20302287581699346, 0.2013888888888889, 0.20547385620915032, 0.20833333333333334, 0.21037581699346405, 0.21405228758169934, 0.21854575163398693, 0.2238562091503268, 0.22916666666666666, 0.23570261437908496, 0.2406045751633987, 0.24468954248366012, 0.2520424836601307, 0.2549019607843137, 0.25735294117647056, 0.2618464052287582, 0.26715686274509803, 0.272875816993464, 0.28227124183006536, 0.3035130718954248, 0.39419934640522875, 0.5310457516339869], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rad17.gap.json b/pfam_gap_rates/Rad17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29cb50d38d43cdd212396ab7dea492a02cc73ab2
--- /dev/null
+++ b/pfam_gap_rates/Rad17.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rad52_Rad22.gap.json b/pfam_gap_rates/Rad52_Rad22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..371de95199b868e9f9b17266abd1c886dfd8d2de
--- /dev/null
+++ b/pfam_gap_rates/Rad52_Rad22.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Raffinose_syn.gap.json b/pfam_gap_rates/Raffinose_syn.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c075712e6933aac8c6373a4927352972c63a5df9
--- /dev/null
+++ b/pfam_gap_rates/Raffinose_syn.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RasGAP_C.gap.json b/pfam_gap_rates/RasGAP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6842beb2e5667b583e96724d875fce6c9562a4f8
--- /dev/null
+++ b/pfam_gap_rates/RasGAP_C.gap.json
@@ -0,0 +1 @@
+{"family": "RasGAP_C", "n_seqs": 393, "length": 145, "gap_rates": [0.4681933842239186, 0.15776081424936386, 0.10941475826972011, 0.0916030534351145, 0.07888040712468193, 0.05343511450381679, 0.05343511450381679, 0.04580152671755725, 0.04580152671755725, 0.043256997455470736, 0.043256997455470736, 0.043256997455470736, 0.043256997455470736, 0.043256997455470736, 0.04071246819338423, 0.04071246819338423, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03307888040712468, 0.03816793893129771, 0.03816793893129771, 0.04071246819338423, 0.027989821882951654, 0.027989821882951654, 0.02544529262086514, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.015267175572519083, 0.015267175572519083, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.020356234096692113, 0.020356234096692113, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.020356234096692113, 0.020356234096692113, 0.020356234096692113, 0.020356234096692113, 0.020356234096692113, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.017811704834605598, 0.020356234096692113, 0.017811704834605598, 0.015267175572519083, 0.01272264631043257, 0.01272264631043257, 0.01272264631043257, 0.01272264631043257, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.017811704834605598, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.02544529262086514, 0.02544529262086514, 0.05343511450381679, 0.05597964376590331, 0.0737913486005089, 0.926208651399491, 0.5521628498727735, 0.44274809160305345, 0.4961832061068702, 0.5470737913486005, 0.6513994910941476, 0.9440203562340967, 0.8905852417302799, 0.5623409669211196, 0.5241730279898219, 0.49363867684478374, 0.366412213740458, 0.42493638676844786, 0.36895674300254455, 0.44783715012722647, 0.3791348600508906, 0.33078880407124683, 0.3231552162849873, 0.30279898218829515, 0.2951653944020356, 0.2875318066157761, 0.2544529262086514, 0.9083969465648855, 0.07124681933842239, 0.05343511450381679, 0.05343511450381679, 0.04834605597964377, 0.05597964376590331, 0.04834605597964377, 0.04071246819338423, 0.043256997455470736, 0.05597964376590331, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.04071246819338423, 0.043256997455470736, 0.043256997455470736, 0.05597964376590331, 0.089058524173028, 0.19338422391857507, 0.9414758269720102], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RasGEF.gap.json b/pfam_gap_rates/RasGEF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f63a56deead02802137652ce10f05f8954a21bc
--- /dev/null
+++ b/pfam_gap_rates/RasGEF.gap.json
@@ -0,0 +1 @@
+{"family": "RasGEF", "n_seqs": 2387, "length": 238, "gap_rates": [0.43862589023879345, 0.15207373271889402, 0.13447842480100544, 0.12274821952241308, 0.11855886049434436, 0.11604524507750315, 0.1152073732718894, 0.11436950146627566, 0.11395056556346879, 0.11227482195224131, 0.10934227063259322, 0.1080854629241726, 0.1051529116045245, 0.10431503979891077, 0.10640971931294511, 0.10263929618768329, 0.10138248847926268, 0.11059907834101383, 0.106828655215752, 0.1051529116045245, 0.10347716799329702, 0.10180142438206954, 0.10222036028487641, 0.10347716799329702, 0.15751989945538333, 0.39338081273565145, 0.2107247591118559, 0.11018014243820695, 0.13615416841223293, 0.16464180980310011, 0.2597402597402597, 0.6317553414327608, 0.7293674067867616, 0.8353581901968998, 0.8567239212400503, 0.8768328445747801, 0.9136992040217846, 0.9359028068705488, 0.9430247172182656, 0.9476330121491412, 0.9493087557603687, 0.948051948051948, 0.9451193967322999, 0.9405111018014244, 0.9291998324256389, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Rbsn.gap.json b/pfam_gap_rates/Rbsn.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3eed30a62ed95eb6caafad0fe175b7fab602e804
--- /dev/null
+++ b/pfam_gap_rates/Rbsn.gap.json
@@ -0,0 +1 @@
+{"family": "Rbsn", "n_seqs": 220, "length": 42, "gap_rates": [0.16818181818181818, 0.06363636363636363, 0.013636363636363636, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004545454545454545, 0.004545454545454545, 0.0, 0.0, 0.0, 0.0, 0.004545454545454545, 0.00909090909090909, 0.01818181818181818, 0.022727272727272728, 0.07272727272727272, 0.22272727272727272, 0.5545454545454546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Reg_prop.gap.json b/pfam_gap_rates/Reg_prop.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7affbfa95b896e0af7099059fe1b01e0cb38744
--- /dev/null
+++ b/pfam_gap_rates/Reg_prop.gap.json
@@ -0,0 +1 @@
+{"family": "Reg_prop", "n_seqs": 4418, "length": 24, "gap_rates": [0.4513354459031236, 0.2003168854685378, 0.13218650973291082, 0.08488003621548212, 0.04594839293798099, 0.013354459031235853, 0.005885015844273427, 0.002037120869171571, 0.00022634676324128565, 0.0, 0.0, 0.0, 0.001358080579447714, 0.000679040289723857, 0.0, 0.0, 0.0011317338162064282, 0.0, 0.0, 0.0, 0.0009053870529651426, 0.012222725215029425, 0.08306926210955183, 0.5796740606609325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Retrotrans_gag.gap.json b/pfam_gap_rates/Retrotrans_gag.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c08c849013d4b93da5d953d855f0490e50ed81c
--- /dev/null
+++ b/pfam_gap_rates/Retrotrans_gag.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RgpF.gap.json b/pfam_gap_rates/RgpF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d62e2f1d7d001d768edc9980aed9d0a5f1cf95ef
--- /dev/null
+++ b/pfam_gap_rates/RgpF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonuc_2-5A.gap.json b/pfam_gap_rates/Ribonuc_2-5A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2646719a39cea29a953345faaf66fd0d24c6fce2
--- /dev/null
+++ b/pfam_gap_rates/Ribonuc_2-5A.gap.json
@@ -0,0 +1 @@
+{"family": "Ribonuc_2-5A", "n_seqs": 420, "length": 151, "gap_rates": [0.2785714285714286, 0.1619047619047619, 0.15, 0.14761904761904762, 0.14523809523809525, 0.14285714285714285, 0.13333333333333333, 0.12380952380952381, 0.12142857142857143, 0.12142857142857143, 0.11666666666666667, 0.11666666666666667, 0.11190476190476191, 0.11190476190476191, 0.11190476190476191, 0.11190476190476191, 0.22380952380952382, 0.4380952380952381, 0.40714285714285714, 0.9452380952380952, 0.95, 0.9380952380952381, 0.13095238095238096, 0.12380952380952381, 0.07857142857142857, 0.06904761904761905, 0.06428571428571428, 0.06428571428571428, 0.06190476190476191, 0.05952380952380952, 0.05952380952380952, 0.05714285714285714, 0.06190476190476191, 0.05714285714285714, 0.05476190476190476, 0.05476190476190476, 0.05476190476190476, 0.9285714285714286, 0.0761904761904762, 0.0761904761904762, 0.05, 0.8142857142857143, 0.9023809523809524, 0.919047619047619, 0.9333333333333333, 0.9119047619047619, 0.8928571428571429, 0.7833333333333333, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03333333333333333, 0.030952380952380953, 0.030952380952380953, 0.03571428571428571, 0.03571428571428571, 0.0380952380952381, 0.0380952380952381, 0.04047619047619048, 0.03571428571428571, 0.030952380952380953, 0.05, 0.0380952380952381, 0.04047619047619048, 0.02619047619047619, 0.9333333333333333, 0.9452380952380952, 0.9214285714285714, 0.02619047619047619, 0.023809523809523808, 0.023809523809523808, 0.06190476190476191, 0.02857142857142857, 0.02619047619047619, 0.023809523809523808, 0.02142857142857143, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.02619047619047619, 0.02619047619047619, 0.023809523809523808, 0.02619047619047619, 0.02619047619047619, 0.02619047619047619, 0.01904761904761905, 0.02142857142857143, 0.023809523809523808, 0.02619047619047619, 0.02619047619047619, 0.02619047619047619, 0.0380952380952381, 0.03571428571428571, 0.03333333333333333, 0.02857142857142857, 0.03333333333333333, 0.02857142857142857, 0.023809523809523808, 0.02857142857142857, 0.03571428571428571, 0.0380952380952381, 0.0380952380952381, 0.9380952380952381, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.95, 0.9428571428571428, 0.9428571428571428, 0.9380952380952381, 0.9333333333333333, 0.08333333333333333, 0.05476190476190476, 0.06190476190476191, 0.0761904761904762, 0.07380952380952381, 0.06904761904761905, 0.05238095238095238, 0.05476190476190476, 0.05238095238095238, 0.05238095238095238, 0.05238095238095238, 0.05, 0.05, 0.05, 0.05, 0.05476190476190476, 0.05476190476190476, 0.05476190476190476, 0.05476190476190476, 0.05476190476190476, 0.05476190476190476, 0.06190476190476191, 0.06428571428571428, 0.06904761904761905, 0.08333333333333333, 0.0880952380952381, 0.1, 0.37142857142857144, 0.75, 0.1595238095238095, 0.15476190476190477, 0.16428571428571428, 0.1880952380952381, 0.20238095238095238, 0.21428571428571427, 0.23333333333333334, 0.25, 0.2714285714285714, 0.3904761904761905], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L11_N.gap.json b/pfam_gap_rates/Ribosomal_L11_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c2f68cdc94453fd634e1f0eca61551a62d9e17b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L11_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L11_N", "n_seqs": 3003, "length": 59, "gap_rates": [0.18714618714618714, 0.06626706626706627, 0.037296037296037296, 0.030636030636030636, 0.026307026307026308, 0.025308025308025308, 0.024975024975024976, 0.024642024642024644, 0.024309024309024308, 0.023643023643023644, 0.026973026973026972, 0.024642024642024644, 0.039627039627039624, 0.04195804195804196, 0.03663003663003663, 0.036297036297036296, 0.01898101898101898, 0.018315018315018316, 0.017982017982017984, 0.016317016317016316, 0.015651015651015652, 0.014652014652014652, 0.014652014652014652, 0.01431901431901432, 0.014652014652014652, 0.011988011988011988, 0.011655011655011656, 0.005661005661005661, 0.005661005661005661, 0.004995004995004995, 0.004995004995004995, 0.004329004329004329, 0.00333000333000333, 0.003663003663003663, 0.003996003996003996, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004995004995004995, 0.004662004662004662, 0.6906426906426907, 0.004995004995004995, 0.005328005328005328, 0.00666000666000666, 0.007326007326007326, 0.008325008325008326, 0.007659007659007659, 0.007659007659007659, 0.007659007659007659, 0.007659007659007659, 0.008325008325008326, 0.008658008658008658, 0.009657009657009658, 0.010323010323010324, 0.012987012987012988, 0.016983016983016984, 0.035298035298035296, 0.04795204795204795, 0.16783216783216784], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L13e.gap.json b/pfam_gap_rates/Ribosomal_L13e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37c26449f1ba97345e4b0a81bd9f88eafc8187da
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L13e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L13e", "n_seqs": 458, "length": 199, "gap_rates": [0.37117903930131, 0.15283842794759825, 0.1462882096069869, 0.14192139737991266, 0.13755458515283842, 0.13537117903930132, 0.13100436681222707, 0.12882096069868995, 0.12663755458515283, 0.12445414847161572, 0.1222707423580786, 0.14410480349344978, 0.1222707423580786, 0.9454148471615721, 0.9454148471615721, 0.9497816593886463, 0.9454148471615721, 0.9454148471615721, 0.9454148471615721, 0.1222707423580786, 0.11790393013100436, 0.11790393013100436, 0.11790393013100436, 0.11353711790393013, 0.11353711790393013, 0.11353711790393013, 0.11135371179039301, 0.11135371179039301, 0.11135371179039301, 0.11353711790393013, 0.11353711790393013, 0.11572052401746726, 0.11353711790393013, 0.11135371179039301, 0.10698689956331878, 0.10698689956331878, 0.10698689956331878, 0.1091703056768559, 0.10480349344978165, 0.10262008733624454, 0.10480349344978165, 0.10480349344978165, 0.10262008733624454, 0.10480349344978165, 0.10262008733624454, 0.0982532751091703, 0.10043668122270742, 0.0982532751091703, 0.09170305676855896, 0.09606986899563319, 0.08951965065502183, 0.5655021834061136, 0.08951965065502183, 0.08951965065502183, 0.08733624454148471, 0.08733624454148471, 0.08733624454148471, 0.08951965065502183, 0.08951965065502183, 0.08951965065502183, 0.09170305676855896, 0.09170305676855896, 0.09170305676855896, 0.08951965065502183, 0.09170305676855896, 0.08733624454148471, 0.07423580786026202, 0.06986899563318777, 0.06550218340611354, 0.0611353711790393, 0.05895196506550218, 0.05895196506550218, 0.05895196506550218, 0.05895196506550218, 0.056768558951965066, 0.05895196506550218, 0.05895196506550218, 0.05895196506550218, 0.05895196506550218, 0.056768558951965066, 0.05240174672489083, 0.04148471615720524, 0.043668122270742356, 0.04585152838427948, 0.04585152838427948, 0.048034934497816595, 0.04585152838427948, 0.04585152838427948, 0.04585152838427948, 0.043668122270742356, 0.043668122270742356, 0.039301310043668124, 0.039301310043668124, 0.039301310043668124, 0.039301310043668124, 0.039301310043668124, 0.039301310043668124, 0.039301310043668124, 0.04148471615720524, 0.04148471615720524, 0.04148471615720524, 0.043668122270742356, 0.043668122270742356, 0.04585152838427948, 0.05240174672489083, 0.05895196506550218, 0.05895196506550218, 0.06331877729257641, 0.05458515283842795, 0.04585152838427948, 0.048034934497816595, 0.04148471615720524, 0.043668122270742356, 0.043668122270742356, 0.04585152838427948, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.04148471615720524, 0.04585152838427948, 0.04585152838427948, 0.04585152838427948, 0.05021834061135371, 0.05895196506550218, 0.06331877729257641, 0.06550218340611354, 0.07641921397379912, 0.07860262008733625, 0.07641921397379912, 0.14847161572052403, 0.9432314410480349, 0.11353711790393013, 0.10698689956331878, 0.10480349344978165, 0.11135371179039301, 0.11135371179039301, 0.11790393013100436, 0.9301310043668122, 0.9301310043668122, 0.9301310043668122, 0.1462882096069869, 0.14192139737991266, 0.13755458515283842, 0.13755458515283842, 0.1615720524017467, 0.17467248908296942, 0.16375545851528384, 0.1615720524017467, 0.15065502183406113, 0.1462882096069869, 0.13100436681222707, 0.9192139737991266, 0.9432314410480349, 0.9017467248908297, 0.13537117903930132, 0.13755458515283842, 0.17248908296943233, 0.15283842794759825, 0.14847161572052403, 0.5545851528384279, 0.1222707423580786, 0.12008733624454149, 0.11353711790393013, 0.15283842794759825, 0.14847161572052403, 0.9323144104803494, 0.2096069868995633, 0.185589519650655, 0.13537117903930132, 0.12663755458515283, 0.1222707423580786, 0.12882096069868995, 0.12663755458515283, 0.12663755458515283, 0.12663755458515283, 0.12663755458515283, 0.12663755458515283, 0.12663755458515283, 0.12663755458515283, 0.12882096069868995, 0.15938864628820962, 0.8973799126637555, 0.8973799126637555, 0.185589519650655, 0.9454148471615721, 0.9301310043668122, 0.16812227074235808, 0.13755458515283842, 0.13100436681222707, 0.13755458515283842, 0.13755458515283842, 0.13755458515283842, 0.13755458515283842, 0.14847161572052403, 0.15065502183406113, 0.15065502183406113, 0.15938864628820962, 0.22270742358078602, 0.5938864628820961], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L14e.gap.json b/pfam_gap_rates/Ribosomal_L14e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..685561a14ba586e20a90018396454d333394b525
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L14e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L14e", "n_seqs": 414, "length": 76, "gap_rates": [0.4975845410628019, 0.04830917874396135, 0.04589371980676329, 0.04106280193236715, 0.033816425120772944, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.03140096618357488, 0.028985507246376812, 0.028985507246376812, 0.03140096618357488, 0.6376811594202898, 0.03140096618357488, 0.03140096618357488, 0.028985507246376812, 0.028985507246376812, 0.026570048309178744, 0.026570048309178744, 0.026570048309178744, 0.026570048309178744, 0.026570048309178744, 0.028985507246376812, 0.028985507246376812, 0.026570048309178744, 0.028985507246376812, 0.03140096618357488, 0.033816425120772944, 0.033816425120772944, 0.026570048309178744, 0.033816425120772944, 0.03140096618357488, 0.026570048309178744, 0.03140096618357488, 0.028985507246376812, 0.03864734299516908, 0.04106280193236715, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.033816425120772944, 0.03140096618357488, 0.033816425120772944, 0.03140096618357488, 0.033816425120772944, 0.036231884057971016, 0.036231884057971016, 0.03864734299516908, 0.03864734299516908, 0.04106280193236715, 0.04830917874396135, 0.04589371980676329, 0.04589371980676329, 0.04830917874396135, 0.04830917874396135, 0.05314009661835749, 0.05555555555555555, 0.05555555555555555, 0.057971014492753624, 0.06038647342995169, 0.06038647342995169, 0.06280193236714976, 0.06280193236714976, 0.06280193236714976, 0.06280193236714976, 0.06521739130434782, 0.07246376811594203, 0.0893719806763285, 0.1642512077294686, 0.4975845410628019], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L16.gap.json b/pfam_gap_rates/Ribosomal_L16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e568312d0a8dd650c6110c8196a47554555884a
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L16.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L16", "n_seqs": 3151, "length": 162, "gap_rates": [0.1878768644874643, 0.15931450333227548, 0.1342430974293875, 0.1145668041891463, 0.10314185972707077, 0.09774674706442399, 0.09108219612821326, 0.08981275785464932, 0.0901301174230403, 0.08981275785464932, 0.2338940019041574, 0.9178038717867344, 0.948905109489051, 0.561091716915265, 0.2338940019041574, 0.09679466835925103, 0.42145350682323074, 0.06347191367819739, 0.06347191367819739, 0.06188511583624246, 0.06125039669946049, 0.8251348778165661, 0.07172326245636305, 0.05744208187876865, 0.05585528403681371, 0.05458584576324976, 0.052999047921294826, 0.051412250079339895, 0.04823865439543002, 0.04823865439543002, 0.04823865439543002, 0.047286575690257064, 0.8489368454458902, 0.8495715645826721, 0.8502062837194542, 0.8514757219930181, 0.8689304982545224, 0.8708346556648683, 0.8686131386861314, 0.8505236432878451, 0.8498889241510632, 0.8492542050142812, 0.8489368454458902, 0.04443033957473818, 0.04220882259600127, 0.04062202475404633, 0.03998730561726436, 0.03840050777530943, 0.03871786734370041, 0.037765788638527455, 0.03808314820691844, 0.03871786734370041, 0.03808314820691844, 0.037448429070136464, 0.03681370993335449, 0.03681370993335449, 0.03617899079657252, 0.035544271659790544, 0.03586163122818153, 0.03586163122818153, 0.035226912091399554, 0.03490955252300857, 0.03459219295461758, 0.03490955252300857, 0.0342748333862266, 0.03141859727070771, 0.02951443986036179, 0.02951443986036179, 0.028879720723579815, 0.028879720723579815, 0.026975563313233895, 0.8064106632814979, 0.7880038083148206, 0.028879720723579815, 0.02824500158679784, 0.022532529355760077, 0.8362424627102507, 0.8400507775309426, 0.8210092034274833, 0.022532529355760077, 0.021580450650587116, 0.02221516978736909, 0.021897810218978103, 0.022849888924151063, 0.02221516978736909, 0.02221516978736909, 0.021580450650587116, 0.021580450650587116, 0.02126309108219613, 0.020945731513805143, 0.020945731513805143, 0.020628371945414153, 0.020628371945414153, 0.020628371945414153, 0.8422722945096794, 0.8429070136464615, 0.8429070136464615, 0.8422722945096794, 0.8422722945096794, 0.01999365280863218, 0.01904157410345922, 0.01904157410345922, 0.018406854966677245, 0.018406854966677245, 0.013963821009203427, 0.014281180577594414, 0.015550618851158363, 0.015550618851158363, 0.016185337987940335, 0.8394160583941606, 0.8397334179625515, 0.8397334179625515, 0.8394160583941606, 0.014281180577594414, 0.014281180577594414, 0.014598540145985401, 0.014598540145985401, 0.015233259282767376, 0.015233259282767376, 0.014915899714376388, 0.014281180577594414, 0.014281180577594414, 0.014598540145985401, 0.014281180577594414, 0.014281180577594414, 0.014281180577594414, 0.015550618851158363, 0.016185337987940335, 0.016502697556331325, 0.01682005712472231, 0.017454776261504285, 0.017772135829895272, 0.9070136464614408, 0.9390669628689305, 0.8330688670263409, 0.7756267851475722, 0.07553157727705491, 0.09806410663281498, 0.03871786734370041, 0.023484608060933037, 0.023484608060933037, 0.023801967629324024, 0.023484608060933037, 0.02316724849254205, 0.02316724849254205, 0.024754046334496984, 0.02507140590288797, 0.025388765471278957, 0.025388765471278957, 0.025706125039669948, 0.02634084417645192, 0.02729292288162488, 0.02856236115518883, 0.02856236115518883, 0.02856236115518883, 0.029197080291970802, 0.029831799428752775, 0.03141859727070771, 0.0342748333862266, 0.04030466518565535, 0.05046017137416693, 0.17010472865756904], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L19e.gap.json b/pfam_gap_rates/Ribosomal_L19e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..959c211200d29a93ceec78fbefc9eb839866ec04
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L19e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L19e", "n_seqs": 564, "length": 144, "gap_rates": [0.6613475177304965, 0.20921985815602837, 0.18617021276595744, 0.17553191489361702, 0.1595744680851064, 0.1524822695035461, 0.14893617021276595, 0.1400709219858156, 0.1400709219858156, 0.1400709219858156, 0.1400709219858156, 0.13652482269503546, 0.12588652482269502, 0.12411347517730496, 0.12234042553191489, 0.11524822695035461, 0.11170212765957446, 0.11347517730496454, 0.11170212765957446, 0.10815602836879433, 0.10815602836879433, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10460992907801418, 0.10460992907801418, 0.10460992907801418, 0.10283687943262411, 0.10283687943262411, 0.10106382978723404, 0.10106382978723404, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.08865248226950355, 0.0797872340425532, 0.08156028368794327, 0.0797872340425532, 0.07801418439716312, 0.0797872340425532, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07624113475177305, 0.07446808510638298, 0.07624113475177305, 0.07624113475177305, 0.07624113475177305, 0.07801418439716312, 0.0797872340425532, 0.0797872340425532, 0.07801418439716312, 0.07624113475177305, 0.08156028368794327, 0.08333333333333333, 0.08687943262411348, 0.09397163120567376, 0.09042553191489362, 0.09397163120567376, 0.0975177304964539, 0.09929078014184398, 0.10106382978723404, 0.10460992907801418, 0.10460992907801418, 0.1099290780141844, 0.0975177304964539, 0.09574468085106383, 0.09042553191489362, 0.09574468085106383, 0.09219858156028368, 0.09219858156028368, 0.08156028368794327, 0.08156028368794327, 0.07801418439716312, 0.0797872340425532, 0.08156028368794327, 0.08865248226950355, 0.09042553191489362, 0.09042553191489362, 0.09397163120567376, 0.09397163120567376, 0.09397163120567376, 0.08865248226950355, 0.09219858156028368, 0.08333333333333333, 0.08333333333333333, 0.08156028368794327, 0.08156028368794327, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.07624113475177305, 0.0797872340425532, 0.08156028368794327, 0.07801418439716312, 0.07446808510638298, 0.07446808510638298, 0.0726950354609929, 0.07092198581560284, 0.0726950354609929, 0.07446808510638298, 0.07446808510638298, 0.07446808510638298, 0.07446808510638298, 0.07446808510638298, 0.0726950354609929, 0.07092198581560284, 0.07092198581560284, 0.07446808510638298, 0.07092198581560284, 0.07092198581560284, 0.07092198581560284, 0.06914893617021277, 0.0726950354609929, 0.07092198581560284, 0.07446808510638298, 0.07446808510638298, 0.07624113475177305, 0.07624113475177305, 0.07446808510638298, 0.07446808510638298, 0.07446808510638298, 0.07446808510638298, 0.07624113475177305, 0.08333333333333333, 0.08156028368794327, 0.08156028368794327, 0.0851063829787234, 0.0851063829787234, 0.08687943262411348, 0.08687943262411348, 0.08865248226950355, 0.08865248226950355, 0.09042553191489362, 0.09042553191489362, 0.09042553191489362, 0.09219858156028368, 0.09397163120567376, 0.0975177304964539, 0.12234042553191489, 0.2074468085106383, 0.4804964539007092], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L21p.gap.json b/pfam_gap_rates/Ribosomal_L21p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a57967db7061566f49433d44c06592ca884e712b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L21p.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L21p", "n_seqs": 2545, "length": 105, "gap_rates": [0.3233791748526523, 0.05029469548133595, 0.03732809430255403, 0.03693516699410609, 0.03379174852652259, 0.029076620825147347, 0.027897838899803535, 0.026719056974459726, 0.026326129666011788, 0.025147347740667975, 0.022789783889980354, 0.021611001964636542, 0.02043222003929273, 0.01768172888015717, 0.016110019646365423, 0.016110019646365423, 0.015324165029469547, 0.015324165029469547, 0.01493123772102161, 0.014538310412573674, 0.014538310412573674, 0.014145383104125737, 0.014145383104125737, 0.014538310412573674, 0.014145383104125737, 0.8373280943025541, 0.02082514734774067, 0.03850687622789784, 0.025540275049115914, 0.019646365422396856, 0.016895874263261296, 0.014145383104125737, 0.014145383104125737, 0.013359528487229863, 0.011787819253438114, 0.01218074656188605, 0.03654223968565815, 0.014145383104125737, 0.01100196463654224, 0.011394891944990177, 0.010609037328094302, 0.0825147347740668, 0.06719056974459725, 0.07033398821218075, 0.2593320235756385, 0.029076620825147347, 0.02711198428290766, 0.9461689587426326, 0.025147347740667975, 0.020039292730844795, 0.02043222003929273, 0.02082514734774067, 0.018467583497053044, 0.017288801571709235, 0.023575638506876228, 0.019646365422396856, 0.04086444007858546, 0.04911591355599214, 0.9426326129666012, 0.9379174852652259, 0.014145383104125737, 0.009823182711198428, 0.009430255402750491, 0.009823182711198428, 0.010609037328094302, 0.009823182711198428, 0.009823182711198428, 0.009823182711198428, 0.009823182711198428, 0.009037328094302554, 0.009037328094302554, 0.009037328094302554, 0.009430255402750491, 0.010216110019646365, 0.01100196463654224, 0.011394891944990177, 0.011787819253438114, 0.011787819253438114, 0.011394891944990177, 0.01100196463654224, 0.012573673870333988, 0.01100196463654224, 0.01100196463654224, 0.01218074656188605, 0.011787819253438114, 0.015717092337917484, 0.01218074656188605, 0.011787819253438114, 0.011787819253438114, 0.01218074656188605, 0.01218074656188605, 0.012573673870333988, 0.013359528487229863, 0.0137524557956778, 0.01493123772102161, 0.01493123772102161, 0.015324165029469547, 0.015717092337917484, 0.016502946954813358, 0.016502946954813358, 0.01768172888015717, 0.018860510805500982, 0.02082514734774067, 0.028683693516699412, 0.10805500982318271], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L28e.gap.json b/pfam_gap_rates/Ribosomal_L28e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ec67a08a995f6e47906e0e07ef1eba92dce6218
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L28e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L28e", "n_seqs": 710, "length": 129, "gap_rates": [0.15070422535211267, 0.08873239436619719, 0.07746478873239436, 0.07183098591549296, 0.0676056338028169, 0.06619718309859154, 0.3154929577464789, 0.06056338028169014, 0.06056338028169014, 0.059154929577464786, 0.6929577464788732, 0.5521126760563381, 0.056338028169014086, 0.05352112676056338, 0.05352112676056338, 0.05070422535211268, 0.05070422535211268, 0.9464788732394366, 0.14084507042253522, 0.4070422535211268, 0.8915492957746479, 0.9056338028169014, 0.8042253521126761, 0.476056338028169, 0.17464788732394365, 0.04084507042253521, 0.038028169014084505, 0.036619718309859155, 0.036619718309859155, 0.035211267605633804, 0.035211267605633804, 0.030985915492957747, 0.030985915492957747, 0.030985915492957747, 0.030985915492957747, 0.029577464788732393, 0.030985915492957747, 0.029577464788732393, 0.029577464788732393, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.02676056338028169, 0.02676056338028169, 0.028169014084507043, 0.02676056338028169, 0.02535211267605634, 0.02535211267605634, 0.02535211267605634, 0.02535211267605634, 0.02535211267605634, 0.029577464788732393, 0.029577464788732393, 0.028169014084507043, 0.6901408450704225, 0.9380281690140845, 0.5661971830985916, 0.028169014084507043, 0.036619718309859155, 0.036619718309859155, 0.038028169014084505, 0.029577464788732393, 0.0323943661971831, 0.0323943661971831, 0.03380281690140845, 0.03380281690140845, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.9225352112676056, 0.030985915492957747, 0.04225352112676056, 0.04084507042253521, 0.04366197183098591, 0.036619718309859155, 0.036619718309859155, 0.036619718309859155, 0.036619718309859155, 0.03380281690140845, 0.03380281690140845, 0.03380281690140845, 0.03380281690140845, 0.03380281690140845, 0.036619718309859155, 0.03943661971830986, 0.04929577464788732, 0.8732394366197183, 0.8507042253521127, 0.04647887323943662, 0.04929577464788732, 0.04225352112676056, 0.038028169014084505, 0.04507042253521127, 0.04647887323943662, 0.04507042253521127, 0.04225352112676056, 0.04084507042253521, 0.04084507042253521, 0.04225352112676056, 0.04225352112676056, 0.04788732394366197, 0.05211267605633803, 0.6957746478873239, 0.6366197183098592, 0.06338028169014084, 0.3788732394366197, 0.06901408450704226, 0.6647887323943662, 0.061971830985915494, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.0647887323943662, 0.06619718309859154, 0.06901408450704226, 0.07464788732394366, 0.07464788732394366, 0.07464788732394366, 0.07605633802816901, 0.07746478873239436, 0.08028169014084507, 0.08169014084507042, 0.08309859154929577, 0.10140845070422536, 0.1732394366197183, 0.4830985915492958], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L30.gap.json b/pfam_gap_rates/Ribosomal_L30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d87d12e4134280c16ddfe3ece204d2da8cdd6ce
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L30.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L30", "n_seqs": 2548, "length": 52, "gap_rates": [0.3685243328100471, 0.09301412872841444, 0.032574568288854, 0.022762951334379906, 0.02040816326530612, 0.019623233908948195, 0.01726844583987441, 0.015698587127158554, 0.29748822605965464, 0.014521193092621664, 0.706436420722135, 0.012951334379905808, 0.01098901098901099, 0.00902668759811617, 0.008634222919937205, 0.008241758241758242, 0.007849293563579277, 0.007456828885400314, 0.007456828885400314, 0.007456828885400314, 0.007456828885400314, 0.0066718995290423865, 0.0066718995290423865, 0.006279434850863423, 0.006279434850863423, 0.005886970172684459, 0.006279434850863423, 0.0031397174254317113, 0.0019623233908948193, 0.0015698587127158557, 0.0015698587127158557, 0.0015698587127158557, 0.0011773940345368916, 0.0011773940345368916, 0.0015698587127158557, 0.0019623233908948193, 0.002354788069073783, 0.0027472527472527475, 0.0031397174254317113, 0.0031397174254317113, 0.003532182103610675, 0.003532182103610675, 0.003924646781789639, 0.0043171114599686025, 0.0043171114599686025, 0.004709576138147566, 0.006279434850863423, 0.008241758241758242, 0.01216640502354788, 0.01726844583987441, 0.03532182103610675, 0.12637362637362637], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L33.gap.json b/pfam_gap_rates/Ribosomal_L33.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..221d4e25950b4f4f1c36315e96d28c7bff64e151
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L33.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L33", "n_seqs": 2059, "length": 58, "gap_rates": [0.544439048081593, 0.10781932977173385, 0.036911121903836816, 0.021369596891694997, 0.016998542982030112, 0.016027197668771247, 0.014084507042253521, 0.013598834385624089, 0.14473045167557066, 0.14618746964545895, 0.1466731423020884, 0.1452161243322001, 0.8858669256920836, 0.8878096163186012, 0.9150072850898494, 0.8941233608547838, 0.8863525983487129, 0.8844099077221952, 0.1466731423020884, 0.017969888295288974, 0.8275862068965517, 0.8455560951918407, 0.8581835842642059, 0.8343856240893638, 0.8227294803302574, 0.003399708596406022, 0.0024283632831471587, 0.0024283632831471587, 0.001942690626517727, 0.0024283632831471587, 0.0009713453132588635, 0.00048567265662943174, 0.055366682855755224, 0.034968431277319086, 0.009713453132588635, 0.00048567265662943174, 0.0009713453132588635, 0.0009713453132588635, 0.0009713453132588635, 0.00048567265662943174, 0.00048567265662943174, 0.00048567265662943174, 0.00048567265662943174, 0.0014570179698882952, 0.0014570179698882952, 0.0014570179698882952, 0.0014570179698882952, 0.0014570179698882952, 0.001942690626517727, 0.001942690626517727, 0.001942690626517727, 0.001942690626517727, 0.0029140359397765905, 0.0029140359397765905, 0.003399708596406022, 0.009713453132588635, 0.017484215638659543, 0.04808159300631375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L37e.gap.json b/pfam_gap_rates/Ribosomal_L37e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be9176e99e1b354d1d80cb770c9aad54826220db
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L37e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L37e", "n_seqs": 446, "length": 55, "gap_rates": [0.4125560538116592, 0.10089686098654709, 0.09192825112107623, 0.08744394618834081, 0.08744394618834081, 0.08744394618834081, 0.06950672645739911, 0.06950672645739911, 0.05829596412556054, 0.05829596412556054, 0.8923766816143498, 0.05829596412556054, 0.06053811659192825, 0.07847533632286996, 0.05605381165919283, 0.05605381165919283, 0.053811659192825115, 0.04932735426008968, 0.04932735426008968, 0.04932735426008968, 0.04708520179372197, 0.04484304932735426, 0.03811659192825112, 0.02914798206278027, 0.026905829596412557, 0.02466367713004484, 0.02466367713004484, 0.026905829596412557, 0.02466367713004484, 0.01569506726457399, 0.011210762331838564, 0.006726457399103139, 0.004484304932735426, 0.006726457399103139, 0.008968609865470852, 0.011210762331838564, 0.013452914798206279, 0.013452914798206279, 0.017937219730941704, 0.8766816143497758, 0.017937219730941704, 0.01569506726457399, 0.01569506726457399, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.053811659192825115, 0.05829596412556054, 0.07399103139013453, 0.07623318385650224, 0.08071748878923767, 0.09417040358744394, 0.12780269058295965, 0.5919282511210763], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L39.gap.json b/pfam_gap_rates/Ribosomal_L39.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09e44716b52008ea1684bff276816a7b456dd91b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L39.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L39", "n_seqs": 341, "length": 42, "gap_rates": [0.11143695014662756, 0.02932551319648094, 0.02932551319648094, 0.017595307917888565, 0.017595307917888565, 0.017595307917888565, 0.017595307917888565, 0.017595307917888565, 0.011730205278592375, 0.011730205278592375, 0.011730205278592375, 0.011730205278592375, 0.008797653958944282, 0.008797653958944282, 0.005865102639296188, 0.005865102639296188, 0.005865102639296188, 0.008797653958944282, 0.005865102639296188, 0.005865102639296188, 0.0, 0.0, 0.002932551319648094, 0.002932551319648094, 0.002932551319648094, 0.005865102639296188, 0.008797653958944282, 0.02346041055718475, 0.04105571847507331, 0.04398826979472141, 0.0469208211143695, 0.04985337243401759, 0.04985337243401759, 0.05571847507331378, 0.05571847507331378, 0.05571847507331378, 0.05571847507331378, 0.05571847507331378, 0.05865102639296188, 0.06158357771260997, 0.09090909090909091, 0.5483870967741935], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L6e_N.gap.json b/pfam_gap_rates/Ribosomal_L6e_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..544fd1ed0d7905acf523f3467681c1b03b17b869
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L6e_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L6e_N", "n_seqs": 311, "length": 62, "gap_rates": [0.7491961414790996, 0.594855305466238, 0.5048231511254019, 0.4790996784565916, 0.4405144694533762, 0.42765273311897106, 0.3729903536977492, 0.35691318327974275, 0.36012861736334406, 0.3311897106109325, 0.29260450160771706, 0.29260450160771706, 0.2829581993569132, 0.2829581993569132, 0.2829581993569132, 0.2733118971061093, 0.2733118971061093, 0.2733118971061093, 0.26688102893890675, 0.26366559485530544, 0.26366559485530544, 0.2604501607717042, 0.2572347266881029, 0.2604501607717042, 0.2540192926045016, 0.2540192926045016, 0.0707395498392283, 0.05466237942122187, 0.05466237942122187, 0.04180064308681672, 0.03858520900321544, 0.03215434083601286, 0.02572347266881029, 0.03215434083601286, 0.01929260450160772, 0.8006430868167203, 0.752411575562701, 0.01929260450160772, 0.02572347266881029, 0.1864951768488746, 0.1639871382636656, 0.14790996784565916, 0.12861736334405144, 0.1189710610932476, 0.1189710610932476, 0.03858520900321544, 0.04823151125401929, 0.05144694533762058, 0.06109324758842444, 0.08681672025723473, 0.5755627009646302, 0.3247588424437299, 0.14790996784565916, 0.15755627009646303, 0.1607717041800643, 0.16720257234726688, 0.19292604501607716, 0.19614147909967847, 0.19935691318327975, 0.21221864951768488, 0.24115755627009647, 0.33762057877813506], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L9_N.gap.json b/pfam_gap_rates/Ribosomal_L9_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae3db3a4b5cc67b0040b649c56fc5b64be644cac
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L9_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L9_N", "n_seqs": 2348, "length": 47, "gap_rates": [0.19165247018739354, 0.05834752981260647, 0.02555366269165247, 0.020442930153321975, 0.01788756388415673, 0.01746166950596252, 0.01575809199318569, 0.015332197614991482, 0.018313458262350937, 0.014054514480408859, 0.012776831345826235, 0.012350936967632026, 0.0068143100511073255, 0.0034071550255536627, 0.002129471890971039, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0008517887563884157, 0.00042589437819420784, 0.00042589437819420784, 0.00042589437819420784, 0.00042589437819420784, 0.0, 0.0, 0.014480408858603067, 0.002129471890971039, 0.002981260647359455, 0.0008517887563884157, 0.0012776831345826234, 0.0012776831345826234, 0.0012776831345826234, 0.0012776831345826234, 0.0017035775127768314, 0.002555366269165247, 0.002555366269165247, 0.005536626916524702, 0.018313458262350937, 0.02129471890971039, 0.027257240204429302, 0.034071550255536626, 0.0434412265758092, 0.05494037478705281, 0.0868824531516184, 0.2402044293015332, 0.6707836456558773], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S11.gap.json b/pfam_gap_rates/Ribosomal_S11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dfc0c3497f715d07921466e47fe7c27ef458f1b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S11.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S11", "n_seqs": 3038, "length": 119, "gap_rates": [0.16260697827518103, 0.09381171823568137, 0.05826201448321264, 0.043449637919684, 0.04048716260697827, 0.03851217906517446, 0.03686635944700461, 0.03489137590520079, 0.03423304805793285, 0.03423304805793285, 0.03357472021066491, 0.03357472021066491, 0.03225806451612903, 0.030283080974325215, 0.030283080974325215, 0.028637261356155366, 0.027978933508887426, 0.026662277814351546, 0.026003949967083606, 0.02337063857801185, 0.02369980250164582, 0.02337063857801185, 0.02304147465437788, 0.02271231073074391, 0.02271231073074391, 0.02304147465437788, 0.02304147465437788, 0.02271231073074391, 0.02271231073074391, 0.021724818959842, 0.021395655036208033, 0.019091507570770244, 0.018104015799868336, 0.017116524028966424, 0.017116524028966424, 0.017116524028966424, 0.018104015799868336, 0.018104015799868336, 0.8288347597103357, 0.018433179723502304, 0.018104015799868336, 0.017774851876234364, 0.017116524028966424, 0.017774851876234364, 0.017774851876234364, 0.016787360105332456, 0.016458196181698487, 0.015141540487162607, 0.014812376563528637, 0.015141540487162607, 0.014812376563528637, 0.014812376563528637, 0.014812376563528637, 0.015141540487162607, 0.014812376563528637, 0.014812376563528637, 0.014154048716260697, 0.02271231073074391, 0.02304147465437788, 0.02337063857801185, 0.014483212639894667, 0.012837393021724819, 0.012508229098090849, 0.013495720868992759, 0.013495720868992759, 0.012837393021724819, 0.013166556945358789, 0.012508229098090849, 0.012179065174456879, 0.01184990125082291, 0.012508229098090849, 0.8294930875576036, 0.8317972350230415, 0.8321263989466754, 0.8331138907175774, 0.8324555628703094, 0.8317972350230415, 0.8304805793285056, 0.8285055957867018, 0.013824884792626729, 0.018762343647136272, 0.017445687952600396, 0.019091507570770244, 0.019091507570770244, 0.018433179723502304, 0.018762343647136272, 0.020078999341672153, 0.019420671494404212, 0.019420671494404212, 0.019420671494404212, 0.019749835418038184, 0.021724818959842, 0.02271231073074391, 0.02238314680710994, 0.02468729427254773, 0.02534562211981567, 0.027649769585253458, 0.028308097432521395, 0.028308097432521395, 0.028308097432521395, 0.028637261356155366, 0.029624753127057275, 0.030612244897959183, 0.031270572745227126, 0.03225806451612903, 0.032587228439763, 0.032916392363396975, 0.03324555628703094, 0.03423304805793285, 0.03456221198156682, 0.03489137590520079, 0.03554970375246873, 0.03620803159973667, 0.03686635944700461, 0.03719552337063858, 0.03785385121790652, 0.04114549045424622, 0.053982883475971036, 0.07537853851217907], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S15.gap.json b/pfam_gap_rates/Ribosomal_S15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1592d415e943f1bc9a3c747fca637a4d2a893ee8
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S15.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S15", "n_seqs": 3048, "length": 83, "gap_rates": [0.3569553805774278, 0.30413385826771655, 0.25393700787401574, 0.13451443569553806, 0.10301837270341208, 0.08956692913385826, 0.08300524934383202, 0.07775590551181102, 0.06758530183727034, 0.046587926509186355, 0.037729658792650916, 0.0344488188976378, 0.16863517060367453, 0.16404199475065617, 0.16338582677165353, 0.16010498687664043, 0.016404199475065617, 0.013779527559055118, 0.012795275590551181, 0.012467191601049869, 0.011482939632545932, 0.012139107611548556, 0.01115485564304462, 0.010498687664041995, 0.00984251968503937, 0.009514435695538058, 0.009514435695538058, 0.008858267716535433, 0.008858267716535433, 0.008858267716535433, 0.00853018372703412, 0.007874015748031496, 0.006889763779527559, 0.006889763779527559, 0.006561679790026247, 0.005905511811023622, 0.014763779527559055, 0.016076115485564306, 0.006889763779527559, 0.004921259842519685, 0.004921259842519685, 0.006233595800524934, 0.006561679790026247, 0.006561679790026247, 0.006233595800524934, 0.006561679790026247, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007545931758530184, 0.007545931758530184, 0.007874015748031496, 0.007874015748031496, 0.008858267716535433, 0.008858267716535433, 0.009514435695538058, 0.010170603674540682, 0.011482939632545932, 0.012139107611548556, 0.013123359580052493, 0.013123359580052493, 0.013779527559055118, 0.014763779527559055, 0.015091863517060367, 0.01541994750656168, 0.017388451443569555, 0.8395669291338582, 0.833989501312336, 0.023622047244094488, 0.024606299212598427, 0.024606299212598427, 0.02821522309711286, 0.0291994750656168, 0.03215223097112861, 0.03543307086614173, 0.03871391076115486, 0.04560367454068241, 0.05347769028871391, 0.15748031496062992, 0.1748687664041995, 0.3431758530183727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S6.gap.json b/pfam_gap_rates/Ribosomal_S6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c7abbd747e4fb94a7e509a38d6b532cbef67e7b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S6.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S6", "n_seqs": 2500, "length": 95, "gap_rates": [0.4148, 0.0536, 0.052, 0.052, 0.0408, 0.0404, 0.04, 0.0376, 0.0372, 0.0408, 0.048, 0.0508, 0.044, 0.0832, 0.1712, 0.0408, 0.0308, 0.0272, 0.022, 0.022, 0.0184, 0.016, 0.014, 0.0128, 0.0136, 0.0124, 0.0128, 0.0104, 0.0104, 0.0192, 0.0116, 0.0688, 0.0168, 0.0116, 0.008, 0.0104, 0.008, 0.0064, 0.0072, 0.0068, 0.0076, 0.006, 0.0052, 0.0048, 0.0044, 0.0036, 0.004, 0.004, 0.0032, 0.0032, 0.0028, 0.0032, 0.0032, 0.864, 0.8652, 0.9452, 0.8648, 0.8556, 0.0036, 0.0036, 0.0036, 0.0032, 0.0028, 0.0032, 0.0036, 0.0032, 0.0032, 0.0032, 0.0032, 0.0032, 0.0032, 0.004, 0.0032, 0.0032, 0.0032, 0.0036, 0.0036, 0.0036, 0.0044, 0.0152, 0.004, 0.004, 0.0048, 0.0052, 0.0064, 0.0068, 0.008, 0.0092, 0.0104, 0.0136, 0.0148, 0.0208, 0.0272, 0.0576, 0.274], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S6e.gap.json b/pfam_gap_rates/Ribosomal_S6e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d366f4833f591b81767d30227e63a400992d97f5
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S6e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S6e", "n_seqs": 538, "length": 128, "gap_rates": [0.2342007434944238, 0.18401486988847585, 0.1449814126394052, 0.1412639405204461, 0.13382899628252787, 0.13382899628252787, 0.13011152416356878, 0.13011152416356878, 0.13197026022304834, 0.14684014869888476, 0.13568773234200743, 0.120817843866171, 0.11338289962825279, 0.10780669144981413, 0.10037174721189591, 0.10037174721189591, 0.10037174721189591, 0.09851301115241635, 0.2695167286245353, 0.10594795539033457, 0.10408921933085502, 0.09665427509293681, 0.09107806691449814, 0.09107806691449814, 0.08921933085501858, 0.08550185873605948, 0.08550185873605948, 0.07992565055762081, 0.08178438661710037, 0.07992565055762081, 0.08364312267657993, 0.05018587360594796, 0.05204460966542751, 0.05390334572490706, 0.05390334572490706, 0.05204460966542751, 0.05018587360594796, 0.05018587360594796, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.19516728624535315, 0.18029739776951673, 0.05018587360594796, 0.05018587360594796, 0.05204460966542751, 0.06133828996282528, 0.05762081784386617, 0.05947955390334572, 0.06505576208178439, 0.06505576208178439, 0.06505576208178439, 0.05947955390334572, 0.05947955390334572, 0.06133828996282528, 0.06133828996282528, 0.06319702602230483, 0.06319702602230483, 0.06505576208178439, 0.06505576208178439, 0.06505576208178439, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05018587360594796, 0.05018587360594796, 0.05018587360594796, 0.05018587360594796, 0.048327137546468404, 0.04460966542750929, 0.04460966542750929, 0.04275092936802974, 0.040892193308550186, 0.040892193308550186, 0.04275092936802974, 0.04275092936802974, 0.20074349442379183, 0.055762081784386616, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.8215613382899628, 0.8197026022304833, 0.05390334572490706, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.046468401486988845, 0.046468401486988845, 0.048327137546468404, 0.048327137546468404, 0.046468401486988845, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.05018587360594796, 0.05204460966542751, 0.05390334572490706, 0.05390334572490706, 0.05390334572490706, 0.05390334572490706, 0.05390334572490706, 0.05390334572490706, 0.05390334572490706, 0.05390334572490706, 0.05762081784386617, 0.06319702602230483, 0.08364312267657993, 0.09479553903345725, 0.09479553903345725, 0.09851301115241635, 0.10223048327137546, 0.10966542750929369, 0.12267657992565056, 0.12825278810408922, 0.14312267657992564, 0.16171003717472118, 0.1821561338289963, 0.26394052044609667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RloB.gap.json b/pfam_gap_rates/RloB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..261e34c6bfe6cb96d0180a1c86c34cd955aee139
--- /dev/null
+++ b/pfam_gap_rates/RloB.gap.json
@@ -0,0 +1 @@
+{"family": "RloB", "n_seqs": 255, "length": 258, "gap_rates": [0.403921568627451, 0.17254901960784313, 0.16470588235294117, 0.14901960784313725, 0.14901960784313725, 0.1450980392156863, 0.13725490196078433, 0.13725490196078433, 0.3843137254901961, 0.12549019607843137, 0.12156862745098039, 0.12156862745098039, 0.12156862745098039, 0.12156862745098039, 0.12156862745098039, 0.12156862745098039, 0.12156862745098039, 0.12156862745098039, 0.12156862745098039, 0.16862745098039217, 0.17647058823529413, 0.16862745098039217, 0.1843137254901961, 0.2, 0.42745098039215684, 0.5411764705882353, 0.5215686274509804, 0.596078431372549, 0.5607843137254902, 0.8352941176470589, 0.9019607843137255, 0.8745098039215686, 0.8196078431372549, 0.6745098039215687, 0.5725490196078431, 0.47843137254901963, 0.34901960784313724, 0.29411764705882354, 0.2235294117647059, 0.1843137254901961, 0.14901960784313725, 0.13725490196078433, 0.12941176470588237, 0.12549019607843137, 0.11764705882352941, 0.10980392156862745, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Roc.gap.json b/pfam_gap_rates/Roc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..056274a1b8204f3a86381687633d21ee41c27dbe
--- /dev/null
+++ b/pfam_gap_rates/Roc.gap.json
@@ -0,0 +1 @@
+{"family": "Roc", "n_seqs": 972, "length": 143, "gap_rates": [0.257201646090535, 0.20267489711934156, 0.19547325102880658, 0.19032921810699588, 0.19032921810699588, 0.18930041152263374, 0.18930041152263374, 0.18106995884773663, 0.1748971193415638, 0.16872427983539096, 0.1697530864197531, 0.16769547325102882, 0.1646090534979424, 0.16358024691358025, 0.16358024691358025, 0.16358024691358025, 0.16358024691358025, 0.16049382716049382, 0.15843621399176955, 0.15432098765432098, 0.15946502057613168, 0.948559670781893, 0.14609053497942387, 0.14094650205761317, 0.1388888888888889, 0.926954732510288, 0.9125514403292181, 0.13271604938271606, 0.9074074074074074, 0.8827160493827161, 0.12345679012345678, 0.11728395061728394, 0.11213991769547325, 0.10390946502057613, 0.09876543209876543, 0.09156378600823045, 0.09259259259259259, 0.09362139917695474, 0.09156378600823045, 0.09156378600823045, 0.09053497942386832, 0.09259259259259259, 0.09465020576131687, 0.09567901234567901, 0.15020576131687244, 0.15534979423868311, 0.492798353909465, 0.4094650205761317, 0.36522633744855965, 0.30761316872427985, 0.31995884773662553, 0.5236625514403292, 0.5606995884773662, 0.5462962962962963, 0.44238683127572015, 0.4403292181069959, 0.45781893004115226, 0.35288065843621397, 0.13991769547325103, 0.0874485596707819, 0.056584362139917695, 0.047325102880658436, 0.046296296296296294, 0.04835390946502058, 0.047325102880658436, 0.047325102880658436, 0.046296296296296294, 0.04835390946502058, 0.08641975308641975, 0.09979423868312758, 0.10390946502057613, 0.10905349794238683, 0.11419753086419752, 0.1183127572016461, 0.1183127572016461, 0.12345679012345678, 0.13271604938271606, 0.1286008230452675, 0.13065843621399176, 0.13168724279835392, 0.13271604938271606, 0.13580246913580246, 0.13580246913580246, 0.1368312757201646, 0.13786008230452676, 0.1388888888888889, 0.1388888888888889, 0.1419753086419753, 0.1419753086419753, 0.1419753086419753, 0.14300411522633744, 0.147119341563786, 0.14814814814814814, 0.38065843621399176, 0.6779835390946503, 0.852880658436214, 0.8960905349794238, 0.9238683127572016, 0.948559670781893, 0.9125514403292181, 0.8765432098765432, 0.779835390946502, 0.4156378600823045, 0.33539094650205764, 0.15329218106995884, 0.21296296296296297, 0.9351851851851852, 0.21502057613168724, 0.1800411522633745, 0.8436213991769548, 0.9403292181069959, 0.8858024691358025, 0.7839506172839507, 0.17901234567901234, 0.18209876543209877, 0.1831275720164609, 0.18621399176954734, 0.18621399176954734, 0.1882716049382716, 0.19238683127572018, 0.1934156378600823, 0.19444444444444445, 0.19855967078189302, 0.2088477366255144, 0.21707818930041153, 0.22839506172839505, 0.24382716049382716, 0.2716049382716049, 0.9310699588477366, 0.2788065843621399, 0.2880658436213992, 0.9012345679012346, 0.29732510288065844, 0.30864197530864196, 0.31275720164609055, 0.31584362139917693, 0.32407407407407407, 0.33539094650205764, 0.3477366255144033, 0.3683127572016461, 0.3940329218106996, 0.41358024691358025, 0.8127572016460906], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rogdi_lz.gap.json b/pfam_gap_rates/Rogdi_lz.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccee5c1fa9329bd1f857eb2b46dd2b8923c60f3e
--- /dev/null
+++ b/pfam_gap_rates/Rogdi_lz.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rossmann-like.gap.json b/pfam_gap_rates/Rossmann-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab02d734f1b1c09b271495a57c2d033c0cf62aa0
--- /dev/null
+++ b/pfam_gap_rates/Rossmann-like.gap.json
@@ -0,0 +1 @@
+{"family": "Rossmann-like", "n_seqs": 406, "length": 125, "gap_rates": [0.9014778325123153, 0.8842364532019704, 0.8325123152709359, 0.7758620689655172, 0.6699507389162561, 0.6206896551724138, 0.6009852216748769, 0.5738916256157636, 0.47783251231527096, 0.24876847290640394, 0.15270935960591134, 0.11083743842364532, 0.08866995073891626, 0.07635467980295567, 0.07635467980295567, 0.07389162561576355, 0.07142857142857142, 0.06896551724137931, 0.06896551724137931, 0.06157635467980296, 0.06157635467980296, 0.06403940886699508, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.05665024630541872, 0.05665024630541872, 0.059113300492610835, 0.06157635467980296, 0.06157635467980296, 0.0665024630541872, 0.06157635467980296, 0.06403940886699508, 0.06403940886699508, 0.06157635467980296, 0.05665024630541872, 0.054187192118226604, 0.054187192118226604, 0.059113300492610835, 0.054187192118226604, 0.04926108374384237, 0.054187192118226604, 0.059113300492610835, 0.0665024630541872, 0.06157635467980296, 0.04926108374384237, 0.05172413793103448, 0.05172413793103448, 0.04926108374384237, 0.059113300492610835, 0.05665024630541872, 0.05665024630541872, 0.08620689655172414, 0.05665024630541872, 0.054187192118226604, 0.04926108374384237, 0.04926108374384237, 0.03940886699507389, 0.03694581280788178, 0.04187192118226601, 0.07142857142857142, 0.046798029556650245, 0.04187192118226601, 0.027093596059113302, 0.019704433497536946, 0.014778325123152709, 0.012315270935960592, 0.012315270935960592, 0.009852216748768473, 0.0049261083743842365, 0.0049261083743842365, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0049261083743842365, 0.0049261083743842365, 0.0024630541871921183, 0.007389162561576354, 0.009852216748768473, 0.009852216748768473, 0.014778325123152709, 0.014778325123152709, 0.022167487684729065, 0.022167487684729065, 0.029556650246305417, 0.022167487684729065, 0.022167487684729065, 0.03940886699507389, 0.03694581280788178, 0.2881773399014778, 0.24876847290640394, 0.08620689655172414, 0.07142857142857142, 0.03694581280788178, 0.022167487684729065, 0.017241379310344827, 0.014778325123152709, 0.014778325123152709, 0.007389162561576354, 0.007389162561576354, 0.009852216748768473, 0.009852216748768473, 0.012315270935960592, 0.014778325123152709, 0.017241379310344827, 0.017241379310344827, 0.019704433497536946, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.034482758620689655, 0.06157635467980296, 0.07389162561576355, 0.0960591133004926, 0.09852216748768473, 0.10591133004926108, 0.10837438423645321, 0.10837438423645321, 0.11822660098522167, 0.15024630541871922, 0.15517241379310345, 0.1625615763546798, 0.16748768472906403, 0.16995073891625614, 0.18226600985221675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rrf2.gap.json b/pfam_gap_rates/Rrf2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11cf5b6242b49c65d537795fd2cb1c96f253883a
--- /dev/null
+++ b/pfam_gap_rates/Rrf2.gap.json
@@ -0,0 +1 @@
+{"family": "Rrf2", "n_seqs": 3760, "length": 84, "gap_rates": [0.2348404255319149, 0.22872340425531915, 0.11356382978723405, 0.07952127659574468, 0.07340425531914893, 0.06436170212765957, 0.059042553191489364, 0.056914893617021275, 0.05319148936170213, 0.05186170212765957, 0.04893617021276596, 0.04547872340425532, 0.0398936170212766, 0.03031914893617021, 0.027659574468085105, 0.02526595744680851, 0.023670212765957446, 0.022872340425531913, 0.022340425531914895, 0.022074468085106384, 0.018085106382978722, 0.016223404255319148, 0.09069148936170213, 0.12632978723404256, 0.2569148936170213, 0.9093085106382979, 0.020478723404255317, 0.009840425531914894, 0.007180851063829787, 0.005319148936170213, 0.005319148936170213, 0.0050531914893617025, 0.0050531914893617025, 0.005319148936170213, 0.005851063829787234, 0.0047872340425531915, 0.0047872340425531915, 0.0047872340425531915, 0.0047872340425531915, 0.0050531914893617025, 0.0045212765957446804, 0.0050531914893617025, 0.0047872340425531915, 0.0050531914893617025, 0.0047872340425531915, 0.0045212765957446804, 0.003989361702127659, 0.003989361702127659, 0.003989361702127659, 0.003457446808510638, 0.003989361702127659, 0.00425531914893617, 0.0050531914893617025, 0.0047872340425531915, 0.0045212765957446804, 0.0047872340425531915, 0.005319148936170213, 0.005585106382978724, 0.006117021276595745, 0.007978723404255319, 0.010106382978723405, 0.010372340425531914, 0.07127659574468086, 0.009840425531914894, 0.009574468085106383, 0.009574468085106383, 0.010106382978723405, 0.010106382978723405, 0.011968085106382979, 0.011436170212765957, 0.013563829787234043, 0.01648936170212766, 0.017553191489361703, 0.017287234042553192, 0.018085106382978722, 0.018617021276595744, 0.019414893617021277, 0.020478723404255317, 0.02127659574468085, 0.023138297872340424, 0.02420212765957447, 0.0375, 0.11170212765957446, 0.4779255319148936], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RsbRD_N.gap.json b/pfam_gap_rates/RsbRD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44a317e146b41149f1608b5bbf7e618b113ef160
--- /dev/null
+++ b/pfam_gap_rates/RsbRD_N.gap.json
@@ -0,0 +1 @@
+{"family": "RsbRD_N", "n_seqs": 230, "length": 120, "gap_rates": [0.5739130434782609, 0.30434782608695654, 0.13043478260869565, 0.09565217391304348, 0.07391304347826087, 0.05652173913043478, 0.05217391304347826, 0.04782608695652174, 0.030434782608695653, 0.030434782608695653, 0.030434782608695653, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.0391304347826087, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.1, 0.13043478260869565, 0.5391304347826087, 0.33043478260869563, 0.1956521739130435, 0.14347826086956522, 0.7, 0.05652173913043478, 0.0391304347826087, 0.02608695652173913, 0.030434782608695653, 0.021739130434782608, 0.021739130434782608, 0.7304347826086957, 0.7347826086956522, 0.7608695652173914, 0.7608695652173914, 0.7608695652173914, 0.7608695652173914, 0.7521739130434782, 0.7304347826086957, 0.7217391304347827, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.21304347826086956, 0.22608695652173913, 0.25217391304347825, 0.27391304347826084, 0.3521739130434783, 0.9043478260869565, 0.9434782608695652, 0.9130434782608695, 0.8956521739130435, 0.39565217391304347, 0.4608695652173913, 0.4217391304347826, 0.908695652173913, 0.6347826086956522, 0.4391304347826087, 0.3565217391304348, 0.17391304347826086, 0.1, 0.034782608695652174, 0.013043478260869565, 0.013043478260869565, 0.013043478260869565, 0.1, 0.07391304347826087, 0.0, 0.0, 0.0, 0.0, 0.004347826086956522, 0.0, 0.0, 0.0, 0.0, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.013043478260869565, 0.013043478260869565, 0.013043478260869565, 0.017391304347826087, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.0391304347826087, 0.06956521739130435, 0.11739130434782609, 0.1782608695652174, 0.30869565217391304, 0.7782608695652173], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RsfS.gap.json b/pfam_gap_rates/RsfS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d8a7d70b730a837ac8e122f2e7421d28169b85e
--- /dev/null
+++ b/pfam_gap_rates/RsfS.gap.json
@@ -0,0 +1 @@
+{"family": "RsfS", "n_seqs": 2098, "length": 112, "gap_rates": [0.7235462345090562, 0.32459485224022877, 0.14537654909437558, 0.10200190657769304, 0.0767397521448999, 0.06530028598665395, 0.06005719733079123, 0.057197330791229746, 0.05433746425166826, 0.048141086749285036, 0.0438512869399428, 0.04194470924690181, 0.04003813155386082, 0.03908484270734033, 0.038608198284080075, 0.03670162059103908, 0.03479504289799809, 0.03479504289799809, 0.03479504289799809, 0.03479504289799809, 0.034318398474737846, 0.9456625357483317, 0.8708293612964728, 0.03765490943755958, 0.0328884652049571, 0.029551954242135366, 0.025262154432793137, 0.021448999046711152, 0.016682554814108675, 0.016205910390848427, 0.011916110581506196, 0.010009532888465206, 0.009532888465204958, 0.009532888465204958, 0.008579599618684462, 0.008579599618684462, 0.008579599618684462, 0.008579599618684462, 0.008102955195424213, 0.0076263107721639654, 0.0076263107721639654, 0.0076263107721639654, 0.007149666348903718, 0.007149666348903718, 0.007149666348903718, 0.007149666348903718, 0.0076263107721639654, 0.007149666348903718, 0.007149666348903718, 0.0076263107721639654, 0.007149666348903718, 0.007149666348903718, 0.008579599618684462, 0.00905624404194471, 0.04242135367016206, 0.1553860819828408, 0.3336510962821735, 0.86558627264061, 0.36987607244995235, 0.28217349857006674, 0.07626310772163966, 0.03145853193517636, 0.014775977121067683, 0.7197330791229742, 0.8379408960915157, 0.9375595805529076, 0.9070543374642517, 0.7311725452812202, 0.715443279313632, 0.023355576739752144, 0.032411820781696854, 0.028598665395614873, 0.019065776930409915, 0.9199237368922784, 0.9470924690181125, 0.9261201143946616, 0.894184938036225, 0.007149666348903718, 0.9494756911344138, 0.949952335557674, 0.9494756911344138, 0.004289799809342231, 0.015252621544327931, 0.003336510962821735, 0.003336510962821735, 0.003336510962821735, 0.003336510962821735, 0.003336510962821735, 0.003336510962821735, 0.006196377502383222, 0.003336510962821735, 0.003336510962821735, 0.0038131553860819827, 0.004766444232602479, 0.004766444232602479, 0.005243088655862726, 0.005719733079122974, 0.005719733079122974, 0.00667302192564347, 0.00667302192564347, 0.0076263107721639654, 0.008102955195424213, 0.008579599618684462, 0.008579599618684462, 0.00905624404194471, 0.011916110581506196, 0.016682554814108675, 0.017159199237368923, 0.01811248808388942, 0.019542421353670163, 0.028598665395614873, 0.0438512869399428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rsm22.gap.json b/pfam_gap_rates/Rsm22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19bc79eb827195b07caed92a265a202c248635a5
--- /dev/null
+++ b/pfam_gap_rates/Rsm22.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RuvA_N.gap.json b/pfam_gap_rates/RuvA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e2d76a342064a85fef2308e425c1dcb0ef45f57
--- /dev/null
+++ b/pfam_gap_rates/RuvA_N.gap.json
@@ -0,0 +1 @@
+{"family": "RuvA_N", "n_seqs": 2040, "length": 63, "gap_rates": [0.026470588235294117, 0.015196078431372549, 0.012745098039215686, 0.011274509803921568, 0.010294117647058823, 0.009313725490196078, 0.009313725490196078, 0.009313725490196078, 0.008823529411764706, 0.009313725490196078, 0.007352941176470588, 0.006372549019607843, 0.006372549019607843, 0.006862745098039216, 0.007352941176470588, 0.006862745098039216, 0.004901960784313725, 0.003431372549019608, 0.00196078431372549, 0.0024509803921568627, 0.000980392156862745, 0.0004901960784313725, 0.0004901960784313725, 0.0004901960784313725, 0.0004901960784313725, 0.0004901960784313725, 0.0004901960784313725, 0.0004901960784313725, 0.0004901960784313725, 0.0004901960784313725, 0.0004901960784313725, 0.020588235294117647, 0.018137254901960786, 0.014215686274509804, 0.01911764705882353, 0.024019607843137256, 0.009313725490196078, 0.49754901960784315, 0.9446078431372549, 0.07352941176470588, 0.04215686274509804, 0.03235294117647059, 0.016176470588235296, 0.0024509803921568627, 0.00196078431372549, 0.0014705882352941176, 0.003431372549019608, 0.000980392156862745, 0.000980392156862745, 0.000980392156862745, 0.000980392156862745, 0.0014705882352941176, 0.00392156862745098, 0.004901960784313725, 0.010294117647058823, 0.010294117647058823, 0.012745098039215686, 0.01715686274509804, 0.022549019607843137, 0.023529411764705882, 0.023529411764705882, 0.049019607843137254, 0.06323529411764706], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAGA-Tad1.gap.json b/pfam_gap_rates/SAGA-Tad1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..facc98463696b9b0246a5f6421cf0d97734dcf1b
--- /dev/null
+++ b/pfam_gap_rates/SAGA-Tad1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SAICAR_synt.gap.json b/pfam_gap_rates/SAICAR_synt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8a1e8d5d8b66c755c70d3bb1020fdcf4af9c763
--- /dev/null
+++ b/pfam_gap_rates/SAICAR_synt.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SAM_1.gap.json b/pfam_gap_rates/SAM_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60a8cd40488a47ad9f82bc196829b200f4092d5a
--- /dev/null
+++ b/pfam_gap_rates/SAM_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SANTA.gap.json b/pfam_gap_rates/SANTA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0b797e2a894881fd71a4d4b1d5a3f130f4aba8f
--- /dev/null
+++ b/pfam_gap_rates/SANTA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SAPS.gap.json b/pfam_gap_rates/SAPS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d443c9ffa0fee14f10e884edda9756c6ab438a09
--- /dev/null
+++ b/pfam_gap_rates/SAPS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SAS4.gap.json b/pfam_gap_rates/SAS4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b783843b47a77d9c08de9a3c10b6547774881d42
--- /dev/null
+++ b/pfam_gap_rates/SAS4.gap.json
@@ -0,0 +1 @@
+{"family": "SAS4", "n_seqs": 105, "length": 111, "gap_rates": [0.23809523809523808, 0.21904761904761905, 0.17142857142857143, 0.0380952380952381, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.9047619047619048, 0.9333333333333333, 0.9333333333333333, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.9333333333333333, 0.9047619047619048, 0.9047619047619048, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.01904761904761905, 0.01904761904761905, 0.02857142857142857, 0.0380952380952381, 0.05714285714285714, 0.08571428571428572, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.6666666666666666, 0.12380952380952381, 0.11428571428571428, 0.11428571428571428, 0.6571428571428571, 0.11428571428571428, 0.10476190476190476, 0.10476190476190476, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.12380952380952381, 0.12380952380952381, 0.12380952380952381, 0.12380952380952381, 0.12380952380952381, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.1619047619047619, 0.18095238095238095, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.2, 0.22857142857142856, 0.2857142857142857, 0.4666666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SBF.gap.json b/pfam_gap_rates/SBF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df3ff4ed77372ed708310dba8f1f5e1926b8173b
--- /dev/null
+++ b/pfam_gap_rates/SBF.gap.json
@@ -0,0 +1 @@
+{"family": "SBF", "n_seqs": 2504, "length": 211, "gap_rates": [0.6589456869009584, 0.2799520766773163, 0.14616613418530353, 0.11142172523961662, 0.0950479233226837, 0.08825878594249201, 0.07787539936102236, 0.06389776357827476, 0.06110223642172524, 0.05910543130990415, 0.05511182108626198, 0.05391373801916933, 0.05391373801916933, 0.052715654952076675, 0.05071884984025559, 0.04952076677316294, 0.048722044728434506, 0.048722044728434506, 0.04752396166134185, 0.04672523961661342, 0.0463258785942492, 0.04792332268370607, 0.04792332268370607, 0.04952076677316294, 0.04992012779552716, 0.04792332268370607, 0.9440894568690096, 0.9464856230031949, 0.9293130990415336, 0.04512779552715655, 0.04313099041533546, 0.04472843450479233, 0.044329073482428115, 0.042731629392971246, 0.041932907348242815, 0.04153354632587859, 0.04073482428115016, 0.03953674121405751, 0.03873801916932907, 0.037539936102236424, 0.036741214057507986, 0.036741214057507986, 0.035942492012779555, 0.04153354632587859, 0.04033546325878594, 0.0371405750798722, 0.03554313099041533, 0.03194888178913738, 0.03194888178913738, 0.031150159744408944, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.48881789137380194, 0.47803514376996803, 0.505591054313099, 0.4772364217252396, 0.06749201277955272, 0.06230031948881789, 0.8123003194888179, 0.814297124600639, 0.8174920127795527, 0.8178913738019169, 0.8170926517571885, 0.8130990415335463, 0.8103035143769968, 0.31509584664536744, 0.29233226837060705, 0.2735623003194888, 0.03194888178913738, 0.027955271565495207, 0.029552715654952075, 0.026357827476038338, 0.026357827476038338, 0.025958466453674122, 0.025559105431309903, 0.02356230031948882, 0.02356230031948882, 0.023961661341853034, 0.024361022364217253, 0.024361022364217253, 0.02356230031948882, 0.0231629392971246, 0.0231629392971246, 0.022763578274760384, 0.022763578274760384, 0.021166134185303515, 0.022364217252396165, 0.02196485623003195, 0.02196485623003195, 0.02196485623003195, 0.021166134185303515, 0.020766773162939296, 0.02036741214057508, 0.020766773162939296, 0.020766773162939296, 0.020766773162939296, 0.021166134185303515, 0.02156549520766773, 0.02196485623003195, 0.02196485623003195, 0.0231629392971246, 0.022763578274760384, 0.022763578274760384, 0.02156549520766773, 0.02196485623003195, 0.02156549520766773, 0.02196485623003195, 0.02196485623003195, 0.022364217252396165, 0.02196485623003195, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022763578274760384, 0.020766773162939296, 0.021166134185303515, 0.8702076677316294, 0.02156549520766773, 0.02196485623003195, 0.022763578274760384, 0.0231629392971246, 0.025159744408945688, 0.023961661341853034, 0.026757188498402557, 0.0347444089456869, 0.03035143769968051, 0.03194888178913738, 0.03913738019169329, 0.6932907348242812, 0.7871405750798722, 0.8282747603833865, 0.795926517571885, 0.7707667731629393, 0.6202076677316294, 0.588258785942492, 0.5706869009584664, 0.5279552715654952, 0.43650159744408945, 0.044329073482428115, 0.034345047923322686, 0.032348242811501594, 0.03154952076677316, 0.032348242811501594, 0.032348242811501594, 0.03274760383386582, 0.03274760383386582, 0.08506389776357827, 0.03554313099041533, 0.035942492012779555, 0.08666134185303515, 0.03394568690095846, 0.03354632587859425, 0.0347444089456869, 0.03394568690095846, 0.03514376996805112, 0.03554313099041533, 0.034345047923322686, 0.03514376996805112, 0.036741214057507986, 0.035942492012779555, 0.036741214057507986, 0.037539936102236424, 0.03793929712460064, 0.03873801916932907, 0.04113418530351438, 0.04233226837060703, 0.04313099041533546, 0.0439297124600639, 0.04672523961661342, 0.04912140575079872, 0.59185303514377, 0.5603035143769968, 0.5503194888178914, 0.5071884984025559, 0.48083067092651754, 0.45726837060702874, 0.10503194888178914, 0.09305111821086262, 0.15854632587859424, 0.08466453674121406, 0.07667731629392971, 0.0742811501597444, 0.0738817891373802, 0.07308306709265176, 0.07348242811501597, 0.07348242811501597, 0.08586261980830671, 0.08266773162939298, 0.0810702875399361, 0.07547923322683706, 0.07468051118210862, 0.0762779552715655, 0.07747603833865814, 0.07907348242811502, 0.08067092651757188, 0.08506389776357827, 0.08985623003194888, 0.09864217252396167, 0.11741214057507987, 0.13138977635782748, 0.1505591054313099, 0.1737220447284345, 0.19249201277955272, 0.21006389776357828, 0.23282747603833867, 0.25798722044728434, 0.28394568690095845, 0.30950479233226835, 0.38498402555910544, 0.5435303514376997], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SBP_bac_1.gap.json b/pfam_gap_rates/SBP_bac_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de89f8eb95867395bebf67387ed8d436b4e3c0ac
--- /dev/null
+++ b/pfam_gap_rates/SBP_bac_1.gap.json
@@ -0,0 +1 @@
+{"family": "SBP_bac_1", "n_seqs": 5000, "length": 380, "gap_rates": [0.9316, 0.8842, 0.826, 0.7586, 0.829, 0.7686, 0.4884, 0.4004, 0.3484, 0.2978, 0.2588, 0.2232, 0.7756, 0.1818, 0.1646, 0.9474, 0.1616, 0.1524, 0.1424, 0.3592, 0.174, 0.1286, 0.0994, 0.0862, 0.082, 0.0796, 0.0782, 0.0754, 0.0884, 0.0818, 0.0762, 0.9316, 0.875, 0.1654, 0.1282, 0.0594, 0.0574, 0.0568, 0.0542, 0.051, 0.9156, 0.8752, 0.1052, 0.0786, 0.0658, 0.0576, 0.039, 0.0364, 0.0362, 0.0336, 0.033, 0.0336, 0.1232, 0.0358, 0.6658, 0.0304, 0.0284, 0.0272, 0.0268, 0.0266, 0.9116, 0.6684, 0.1116, 0.0768, 0.0692, 0.0622, 0.0614, 0.0512, 0.9064, 0.0606, 0.0706, 0.0776, 0.075, 0.0578, 0.9142, 0.0446, 0.039, 0.0242, 0.0232, 0.0226, 0.0226, 0.0254, 0.024, 0.033, 0.029, 0.0262, 0.0264, 0.0292, 0.1176, 0.1918, 0.1948, 0.1912, 0.3858, 0.4286, 0.5198, 0.5648, 0.5186, 0.4966, 0.471, 0.5438, 0.5554, 0.4958, 0.4712, 0.1714, 0.1762, 0.1858, 0.1812, 0.1864, 0.186, 0.192, 0.2872, 0.4182, 0.213, 0.1208, 0.293, 0.807, 0.9358, 0.9028, 0.3756, 0.1312, 0.1004, 0.0962, 0.1358, 0.0912, 0.0874, 0.0828, 0.0768, 0.595, 0.0736, 0.3182, 0.0376, 0.0352, 0.0288, 0.0278, 0.0272, 0.0242, 0.9468, 0.9406, 0.0334, 0.0318, 0.0308, 0.031, 0.0294, 0.0296, 0.9452, 0.9378, 0.047, 0.0624, 0.0642, 0.0712, 0.0588, 0.049, 0.6338, 0.8984, 0.9328, 0.9472, 0.9178, 0.7528, 0.4948, 0.0408, 0.0398, 0.026, 0.0264, 0.0268, 0.0286, 0.0272, 0.0274, 0.0278, 0.028, 0.028, 0.028, 0.0294, 0.031, 0.0308, 0.0314, 0.0326, 0.0336, 0.0336, 0.0422, 0.044, 0.7276, 0.8034, 0.8718, 0.921, 0.9428, 0.9342, 0.908, 0.836, 0.76, 0.653, 0.4754, 0.3796, 0.28, 0.2382, 0.19, 0.1482, 0.0912, 0.077, 0.0692, 0.0654, 0.0718, 0.0686, 0.068, 0.0682, 0.0696, 0.0838, 0.1024, 0.162, 0.1306, 0.1158, 0.0976, 0.0914, 0.0858, 0.0828, 0.083, 0.1856, 0.1746, 0.1414, 0.1428, 0.1396, 0.1396, 0.153, 0.166, 0.1256, 0.4416, 0.683, 0.8278, 0.8724, 0.9084, 0.9306, 0.9488, 0.9394, 0.9214, 0.8936, 0.8488, 0.7836, 0.5822, 0.2276, 0.1354, 0.1704, 0.1162, 0.1114, 0.105, 0.0994, 0.0968, 0.0964, 0.0822, 0.898, 0.946, 0.7754, 0.0626, 0.062, 0.0604, 0.0594, 0.0604, 0.0606, 0.0632, 0.065, 0.0692, 0.6442, 0.6434, 0.6352, 0.623, 0.6144, 0.3838, 0.279, 0.114, 0.0862, 0.0692, 0.0632, 0.0654, 0.0604, 0.0592, 0.0582, 0.0586, 0.0586, 0.0588, 0.0608, 0.0642, 0.0662, 0.1154, 0.1118, 0.0918, 0.0982, 0.0878, 0.0968, 0.9434, 0.9336, 0.0886, 0.086, 0.084, 0.0814, 0.0766, 0.0732, 0.0902, 0.1096, 0.094, 0.0864, 0.1022, 0.1068, 0.1222, 0.7608, 0.806, 0.8022, 0.7994, 0.8188, 0.843, 0.7472, 0.6868, 0.5994, 0.3102, 0.2356, 0.1868, 0.1402, 0.091, 0.0876, 0.0838, 0.0946, 0.0878, 0.0846, 0.0856, 0.1594, 0.1516, 0.1474, 0.1304, 0.1168, 0.1144, 0.1178, 0.1226, 0.1536, 0.1478, 0.1532, 0.1494, 0.1542, 0.1496, 0.1478, 0.1654, 0.1718, 0.189, 0.1786, 0.4946, 0.7958, 0.9174, 0.8716, 0.7018, 0.2794, 0.1474, 0.101, 0.098, 0.0974, 0.0994, 0.913, 0.099, 0.0986, 0.0994, 0.1002, 0.101, 0.1034, 0.1054, 0.1076, 0.1094, 0.144, 0.143, 0.1362, 0.9494, 0.1242, 0.128, 0.1324, 0.1372, 0.1434, 0.156, 0.1778, 0.1912, 0.2204, 0.2538, 0.2948, 0.3994, 0.5376, 0.6922, 0.9216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SCPU.gap.json b/pfam_gap_rates/SCPU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25cc14dda24a3ae9bdda31ea59685067878213c7
--- /dev/null
+++ b/pfam_gap_rates/SCPU.gap.json
@@ -0,0 +1 @@
+{"family": "SCPU", "n_seqs": 274, "length": 174, "gap_rates": [0.572992700729927, 0.44525547445255476, 0.3759124087591241, 0.3248175182481752, 0.3029197080291971, 0.2846715328467153, 0.25547445255474455, 0.18613138686131386, 0.1386861313868613, 0.11313868613138686, 0.08394160583941605, 0.06569343065693431, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.040145985401459854, 0.040145985401459854, 0.043795620437956206, 0.7700729927007299, 0.8065693430656934, 0.8211678832116789, 0.8613138686131386, 0.9124087591240876, 0.8321167883211679, 0.8102189781021898, 0.791970802919708, 0.7335766423357665, 0.5474452554744526, 0.058394160583941604, 0.05474452554744526, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.7299270072992701, 0.8941605839416058, 0.9379562043795621, 0.7883211678832117, 0.6861313868613139, 0.6094890510948905, 0.35036496350364965, 0.11678832116788321, 0.06934306569343066, 0.0364963503649635, 0.032846715328467155, 0.032846715328467155, 0.032846715328467155, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.9452554744525548, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.021897810218978103, 0.021897810218978103, 0.07664233576642336, 0.8394160583941606, 0.8540145985401459, 0.9379562043795621, 0.9233576642335767, 0.8503649635036497, 0.7554744525547445, 0.040145985401459854, 0.0364963503649635, 0.025547445255474453, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.014598540145985401, 0.014598540145985401, 0.01824817518248175, 0.043795620437956206, 0.040145985401459854, 0.04744525547445255, 0.04744525547445255, 0.05474452554744526, 0.04744525547445255, 0.11313868613138686, 0.45985401459854014, 0.7700729927007299, 0.8978102189781022, 0.9306569343065694, 0.8503649635036497, 0.5985401459854015, 0.051094890510948905, 0.040145985401459854, 0.032846715328467155, 0.032846715328467155, 0.029197080291970802, 0.5656934306569343, 0.4854014598540146, 0.04744525547445255, 0.025547445255474453, 0.040145985401459854, 0.8503649635036497, 0.051094890510948905, 0.01824817518248175, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.01824817518248175, 0.032846715328467155, 0.029197080291970802, 0.040145985401459854, 0.0364963503649635, 0.029197080291970802, 0.04744525547445255, 0.05474452554744526, 0.09124087591240876, 0.07664233576642336, 0.043795620437956206, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.029197080291970802, 0.032846715328467155, 0.0364963503649635, 0.040145985401459854, 0.0364963503649635, 0.14963503649635038, 0.24452554744525548, 0.354014598540146, 0.6313868613138686, 0.6934306569343066, 0.8065693430656934, 0.916058394160584, 0.8394160583941606, 0.7408759124087592, 0.6788321167883211, 0.5547445255474452, 0.051094890510948905, 0.051094890510948905, 0.040145985401459854, 0.040145985401459854, 0.032846715328467155, 0.032846715328467155, 0.032846715328467155, 0.032846715328467155, 0.032846715328467155, 0.0364963503649635, 0.0364963503649635, 0.032846715328467155, 0.0364963503649635, 0.051094890510948905, 0.9197080291970803, 0.6058394160583942, 0.06934306569343066, 0.05474452554744526, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.058394160583941604, 0.06204379562043796, 0.06204379562043796, 0.06934306569343066, 0.08029197080291971, 0.08394160583941605, 0.09124087591240876, 0.11678832116788321, 0.15328467153284672, 0.40145985401459855], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SF1-HH.gap.json b/pfam_gap_rates/SF1-HH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91f2bfa6f564c5c3f77dbff59cd3814ced0e935d
--- /dev/null
+++ b/pfam_gap_rates/SF1-HH.gap.json
@@ -0,0 +1 @@
+{"family": "SF1-HH", "n_seqs": 317, "length": 121, "gap_rates": [0.5110410094637224, 0.24921135646687698, 0.19873817034700317, 0.1861198738170347, 0.17665615141955837, 0.17665615141955837, 0.17665615141955837, 0.17665615141955837, 0.3186119873817035, 0.48580441640378547, 0.3249211356466877, 0.2302839116719243, 0.17665615141955837, 0.19873817034700317, 0.23974763406940064, 0.48264984227129337, 0.49842271293375395, 0.45110410094637227, 0.3028391167192429, 0.14195583596214512, 0.12933753943217666, 0.12302839116719243, 0.11356466876971609, 0.10725552050473186, 0.12302839116719243, 0.11356466876971609, 0.10725552050473186, 0.8990536277602523, 0.0946372239747634, 0.0946372239747634, 0.0914826498422713, 0.08832807570977919, 0.08832807570977919, 0.13564668769716087, 0.07886435331230283, 0.07886435331230283, 0.0694006309148265, 0.04416403785488959, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03470031545741325, 0.943217665615142, 0.943217665615142, 0.9400630914826499, 0.050473186119873815, 0.668769716088328, 0.08517350157728706, 0.08201892744479496, 0.0914826498422713, 0.0473186119873817, 0.9211356466876972, 0.943217665615142, 0.8201892744479495, 0.42586750788643535, 0.04416403785488959, 0.03470031545741325, 0.031545741324921134, 0.03470031545741325, 0.03470031545741325, 0.03470031545741325, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03470031545741325, 0.03470031545741325, 0.03470031545741325, 0.025236593059936908, 0.031545741324921134, 0.028391167192429023, 0.01892744479495268, 0.022082018927444796, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.025236593059936908, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.031545741324921134, 0.031545741324921134, 0.03785488958990536, 0.04416403785488959, 0.050473186119873815, 0.056782334384858045, 0.05993690851735016, 0.06624605678233439, 0.07886435331230283, 0.09779179810725552, 0.14826498422712933], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SF3b1.gap.json b/pfam_gap_rates/SF3b1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a9517ec86a0673a5451e463b84d2c8c4db95c74
--- /dev/null
+++ b/pfam_gap_rates/SF3b1.gap.json
@@ -0,0 +1 @@
+{"family": "SF3b1", "n_seqs": 308, "length": 192, "gap_rates": [0.8603896103896104, 0.6590909090909091, 0.3474025974025974, 0.14935064935064934, 0.09415584415584416, 0.07792207792207792, 0.07467532467532467, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06168831168831169, 0.06168831168831169, 0.05194805194805195, 0.24675324675324675, 0.2792207792207792, 0.3181818181818182, 0.4577922077922078, 0.5584415584415584, 0.6688311688311688, 0.7207792207792207, 0.7597402597402597, 0.7987012987012987, 0.8116883116883117, 0.8214285714285714, 0.8246753246753247, 0.8538961038961039, 0.8733766233766234, 0.8863636363636364, 0.9058441558441559, 0.9318181818181818, 0.948051948051948, 0.948051948051948, 0.9383116883116883, 0.9253246753246753, 0.9025974025974026, 0.8766233766233766, 0.8636363636363636, 0.8311688311688312, 0.8214285714285714, 0.814935064935065, 0.7987012987012987, 0.7727272727272727, 0.7435064935064936, 0.7012987012987013, 0.5909090909090909, 0.5162337662337663, 0.4090909090909091, 0.2922077922077922, 0.24675324675324675, 0.23376623376623376, 0.06168831168831169, 0.15584415584415584, 0.8441558441558441, 0.4837662337662338, 0.7954545454545454, 0.38961038961038963, 0.3538961038961039, 0.8831168831168831, 0.2987012987012987, 0.275974025974026, 0.3051948051948052, 0.6948051948051948, 0.7694805194805194, 0.8538961038961039, 0.9058441558441559, 0.9415584415584416, 0.8668831168831169, 0.8409090909090909, 0.7142857142857143, 0.6655844155844156, 0.048701298701298704, 0.04220779220779221, 0.04220779220779221, 0.03571428571428571, 0.03571428571428571, 0.935064935064935, 0.9448051948051948, 0.9253246753246753, 0.06168831168831169, 0.6753246753246753, 0.6136363636363636, 0.1266233766233766, 0.06168831168831169, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.032467532467532464, 0.03571428571428571, 0.9058441558441559, 0.9448051948051948, 0.4805194805194805, 0.24675324675324675, 0.2532467532467532, 0.22077922077922077, 0.19155844155844157, 0.1590909090909091, 0.7792207792207793, 0.8863636363636364, 0.9090909090909091, 0.9285714285714286, 0.9285714285714286, 0.8961038961038961, 0.8181818181818182, 0.7467532467532467, 0.1461038961038961, 0.04220779220779221, 0.03896103896103896, 0.03896103896103896, 0.922077922077922, 0.9415584415584416, 0.948051948051948, 0.9285714285714286, 0.9090909090909091, 0.1396103896103896, 0.12012987012987013, 0.07142857142857142, 0.05194805194805195, 0.032467532467532464, 0.012987012987012988, 0.02922077922077922, 0.01948051948051948, 0.01948051948051948, 0.016233766233766232, 0.022727272727272728, 0.09415584415584416, 0.032467532467532464, 0.012987012987012988, 0.00974025974025974, 0.00974025974025974, 0.00974025974025974, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.00974025974025974, 0.00974025974025974, 0.8409090909090909, 0.8344155844155844, 0.288961038961039, 0.00974025974025974, 0.00974025974025974, 0.012987012987012988, 0.00974025974025974, 0.012987012987012988, 0.016233766233766232, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.032467532467532464, 0.022727272727272728, 0.03571428571428571, 0.04220779220779221, 0.045454545454545456, 0.09415584415584416, 0.06168831168831169, 0.07467532467532467, 0.06818181818181818, 0.06493506493506493, 0.09415584415584416, 0.08766233766233766, 0.08441558441558442, 0.07792207792207792, 0.1525974025974026, 0.15584415584415584, 0.21753246753246752, 0.2305194805194805, 0.44155844155844154, 0.5811688311688312, 0.9058441558441559, 0.8538961038961039, 0.1525974025974026, 0.11363636363636363, 0.10714285714285714, 0.10714285714285714, 0.11038961038961038, 0.12012987012987013, 0.12337662337662338, 0.1590909090909091, 0.3246753246753247, 0.6363636363636364], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SGL.gap.json b/pfam_gap_rates/SGL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e5d2bed5ec7299fb63d4345350050b0544c7b5e
--- /dev/null
+++ b/pfam_gap_rates/SGL.gap.json
@@ -0,0 +1 @@
+{"family": "SGL", "n_seqs": 2136, "length": 315, "gap_rates": [0.5173220973782772, 0.41807116104868913, 0.3146067415730337, 0.30664794007490637, 0.301498127340824, 0.29634831460674155, 0.2940074906367041, 0.29307116104868913, 0.39653558052434457, 0.4204119850187266, 0.27715355805243447, 0.273876404494382, 0.27153558052434457, 0.2705992509363296, 0.26591760299625467, 0.26357677902621723, 0.26357677902621723, 0.2607677902621723, 0.2612359550561798, 0.26685393258426965, 0.25140449438202245, 0.24812734082397003, 0.2443820224719101, 0.24344569288389514, 0.24297752808988765, 0.24672284644194756, 0.24672284644194756, 0.25280898876404495, 0.24906367041198502, 0.24391385767790263, 0.23876404494382023, 0.23782771535580524, 0.23876404494382023, 0.2350187265917603, 0.24859550561797752, 0.27153558052434457, 0.8951310861423221, 0.9311797752808989, 0.9433520599250936, 0.947565543071161, 0.9489700374531835, 0.9456928838951311, 0.9405430711610487, 0.9222846441947565, 0.8651685393258427, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SH3BGR.gap.json b/pfam_gap_rates/SH3BGR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db424a189b6762633c796c097debfa7ee15723b5
--- /dev/null
+++ b/pfam_gap_rates/SH3BGR.gap.json
@@ -0,0 +1 @@
+{"family": "SH3BGR", "n_seqs": 254, "length": 104, "gap_rates": [0.6732283464566929, 0.5275590551181102, 0.2952755905511811, 0.28346456692913385, 0.22440944881889763, 0.22440944881889763, 0.20866141732283464, 0.1968503937007874, 0.1889763779527559, 0.18110236220472442, 0.1732283464566929, 0.14960629921259844, 0.13385826771653545, 0.11811023622047244, 0.0984251968503937, 0.05905511811023622, 0.05511811023622047, 0.051181102362204724, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.04330708661417323, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.031496062992125984, 0.031496062992125984, 0.027559055118110236, 0.031496062992125984, 0.031496062992125984, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.03543307086614173, 0.7992125984251969, 0.7795275590551181, 0.023622047244094488, 0.03543307086614173, 0.031496062992125984, 0.031496062992125984, 0.027559055118110236, 0.027559055118110236, 0.015748031496062992, 0.015748031496062992, 0.01968503937007874, 0.03937007874015748, 0.03937007874015748, 0.051181102362204724, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.65748031496063, 0.7007874015748031, 0.6456692913385826, 0.5708661417322834, 0.43700787401574803, 0.3779527559055118, 0.30708661417322836, 0.21653543307086615, 0.1220472440944882, 0.05905511811023622, 0.05511811023622047, 0.06299212598425197, 0.051181102362204724, 0.08661417322834646, 0.1141732283464567, 0.05511811023622047, 0.047244094488188976, 0.051181102362204724, 0.04330708661417323, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.07874015748031496, 0.08267716535433071, 0.09055118110236221, 0.09055118110236221, 0.09448818897637795, 0.0984251968503937, 0.0984251968503937, 0.1062992125984252, 0.11023622047244094, 0.1141732283464567, 0.11811023622047244, 0.13385826771653545, 0.15354330708661418, 0.16141732283464566, 0.18110236220472442, 0.20078740157480315, 0.2283464566929134, 0.23228346456692914, 0.2874015748031496, 0.35826771653543305, 0.6614173228346457], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SHS2_Rpb7-N.gap.json b/pfam_gap_rates/SHS2_Rpb7-N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3b938fb9356b62209e19fcea4a99b28fd09e5f1
--- /dev/null
+++ b/pfam_gap_rates/SHS2_Rpb7-N.gap.json
@@ -0,0 +1 @@
+{"family": "SHS2_Rpb7-N", "n_seqs": 873, "length": 80, "gap_rates": [0.7800687285223368, 0.3516609392898053, 0.2554410080183276, 0.10194730813287514, 0.07445589919816724, 0.058419243986254296, 0.056128293241695305, 0.054982817869415807, 0.054982817869415807, 0.052691867124856816, 0.053837342497136315, 0.052691867124856816, 0.2004581901489118, 0.037800687285223365, 0.022909507445589918, 0.019473081328751432, 0.018327605956471937, 0.014891179839633447, 0.014891179839633447, 0.06414662084765177, 0.012600229095074456, 0.011454753722794959, 0.011454753722794959, 0.0572737686139748, 0.016036655211912942, 0.011454753722794959, 0.010309278350515464, 0.009163802978235968, 0.006872852233676976, 0.008018327605956471, 0.0057273768613974796, 0.0057273768613974796, 0.003436426116838488, 0.003436426116838488, 0.010309278350515464, 0.8201603665521191, 0.06987399770904926, 0.0, 0.0, 0.0, 0.0, 0.001145475372279496, 0.002290950744558992, 0.001145475372279496, 0.001145475372279496, 0.9427262313860252, 0.001145475372279496, 0.002290950744558992, 0.002290950744558992, 0.001145475372279496, 0.002290950744558992, 0.9358533791523482, 0.9392898052691867, 0.9415807560137457, 0.9484536082474226, 0.9461626575028637, 0.9392898052691867, 0.9381443298969072, 0.8751431844215349, 0.003436426116838488, 0.006872852233676976, 0.006872852233676976, 0.012600229095074456, 0.008018327605956471, 0.008018327605956471, 0.035509736540664374, 0.013745704467353952, 0.010309278350515464, 0.011454753722794959, 0.012600229095074456, 0.014891179839633447, 0.019473081328751432, 0.022909507445589918, 0.025200458190148912, 0.026345933562428408, 0.030927835051546393, 0.033218785796105384, 0.042382588774341354, 0.07560137457044673, 0.12600229095074456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SIR2_2.gap.json b/pfam_gap_rates/SIR2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0efc0c4a0e265a76d97931ef9bc3643130e8063a
--- /dev/null
+++ b/pfam_gap_rates/SIR2_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SMC_Nse1.gap.json b/pfam_gap_rates/SMC_Nse1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f8f1058c5d3d5db7dd628368e813cc1c08ad088
--- /dev/null
+++ b/pfam_gap_rates/SMC_Nse1.gap.json
@@ -0,0 +1 @@
+{"family": "SMC_Nse1", "n_seqs": 257, "length": 227, "gap_rates": [0.3424124513618677, 0.2140077821011673, 0.19455252918287938, 0.19066147859922178, 0.1828793774319066, 0.17898832684824903, 0.17898832684824903, 0.17898832684824903, 0.17120622568093385, 0.17120622568093385, 0.17120622568093385, 0.16731517509727625, 0.16731517509727625, 0.15953307392996108, 0.15953307392996108, 0.1556420233463035, 0.1556420233463035, 0.1556420233463035, 0.1556420233463035, 0.1556420233463035, 0.1556420233463035, 0.1556420233463035, 0.15953307392996108, 0.1556420233463035, 0.15953307392996108, 0.15953307392996108, 0.17898832684824903, 0.2918287937743191, 0.3151750972762646, 0.31906614785992216, 0.6731517509727627, 0.8443579766536965, 0.9455252918287937, 0.9105058365758755, 0.7704280155642024, 0.642023346303502, 0.556420233463035, 0.5680933852140078, 0.5291828793774319, 0.4669260700389105, 0.3424124513618677, 0.9260700389105059, 0.9377431906614786, 0.8910505836575876, 0.17509727626459143, 0.16342412451361868, 0.14007782101167315, 0.11284046692607004, 0.10505836575875487, 0.10505836575875487, 0.09727626459143969, 0.09727626459143969, 0.09727626459143969, 0.08949416342412451, 0.08949416342412451, 0.08949416342412451, 0.08949416342412451, 0.07392996108949416, 0.07392996108949416, 0.07392996108949416, 0.07392996108949416, 0.07392996108949416, 0.07003891050583658, 0.07003891050583658, 0.07003891050583658, 0.07003891050583658, 0.07003891050583658, 0.06614785992217899, 0.06614785992217899, 0.06614785992217899, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.054474708171206226, 0.05058365758754864, 0.05058365758754864, 0.04669260700389105, 0.9416342412451362, 0.9455252918287937, 0.9455252918287937, 0.9455252918287937, 0.9494163424124513, 0.9455252918287937, 0.9455252918287937, 0.9416342412451362, 0.9416342412451362, 0.5214007782101168, 0.9494163424124513, 0.9494163424124513, 0.9455252918287937, 0.08949416342412451, 0.0622568093385214, 0.04669260700389105, 0.45136186770428016, 0.05058365758754864, 0.05058365758754864, 0.042801556420233464, 0.04669260700389105, 0.04669260700389105, 0.05058365758754864, 0.054474708171206226, 0.054474708171206226, 0.06614785992217899, 0.07003891050583658, 0.06614785992217899, 0.06614785992217899, 0.07003891050583658, 0.06614785992217899, 0.07003891050583658, 0.06614785992217899, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.06614785992217899, 0.07003891050583658, 0.8326848249027238, 0.10894941634241245, 0.4474708171206226, 0.46303501945525294, 0.48638132295719844, 0.5603112840466926, 0.4785992217898833, 0.3657587548638132, 0.26459143968871596, 0.17120622568093385, 0.15953307392996108, 0.14396887159533073, 0.14785992217898833, 0.15953307392996108, 0.15953307392996108, 0.15953307392996108, 0.15953307392996108, 0.8482490272373541, 0.7626459143968871, 0.17898832684824903, 0.1867704280155642, 0.17509727626459143, 0.17120622568093385, 0.17120622568093385, 0.642023346303502, 0.6381322957198443, 0.6264591439688716, 0.5252918287937743, 0.5330739299610895, 0.6342412451361867, 0.77431906614786, 0.7976653696498055, 0.7315175097276264, 0.6614785992217899, 0.8210116731517509, 0.867704280155642, 0.8832684824902723, 0.9299610894941635, 0.9027237354085603, 0.8793774319066148, 0.8560311284046692, 0.7898832684824902, 0.5525291828793775, 0.5525291828793775, 0.4396887159533074, 0.3735408560311284, 0.46303501945525294, 0.7354085603112841, 0.77431906614786, 0.7276264591439688, 0.6264591439688716, 0.9377431906614786, 0.5642023346303502, 0.5408560311284046, 0.5252918287937743, 0.38132295719844356, 0.29571984435797666, 0.25680933852140075, 0.22957198443579765, 0.1867704280155642, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1867704280155642, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.1828793774319066, 0.19844357976653695, 0.26459143968871596, 0.2490272373540856, 0.20622568093385213, 0.9416342412451362, 0.22957198443579765, 0.2178988326848249, 0.2140077821011673, 0.2140077821011673, 0.2140077821011673, 0.2140077821011673, 0.2178988326848249, 0.2178988326848249, 0.22178988326848248, 0.22568093385214008, 0.22568093385214008, 0.22568093385214008, 0.23735408560311283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SMI1_KNR4.gap.json b/pfam_gap_rates/SMI1_KNR4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8a04e6c5cbe5bca325e83c9adca49dba80327b8
--- /dev/null
+++ b/pfam_gap_rates/SMI1_KNR4.gap.json
@@ -0,0 +1 @@
+{"family": "SMI1_KNR4", "n_seqs": 693, "length": 230, "gap_rates": [0.47763347763347763, 0.30014430014430016, 0.22510822510822512, 0.17316017316017315, 0.1414141414141414, 0.11832611832611832, 0.1038961038961039, 0.09668109668109669, 0.09235209235209235, 0.08946608946608947, 0.08513708513708514, 0.08513708513708514, 0.08080808080808081, 0.08080808080808081, 0.07503607503607504, 0.06926406926406926, 0.049062049062049064, 0.044733044733044736, 0.030303030303030304, 0.025974025974025976, 0.024531024531024532, 0.024531024531024532, 0.023088023088023088, 0.023088023088023088, 0.020202020202020204, 0.020202020202020204, 0.046176046176046176, 0.030303030303030304, 0.021645021645021644, 0.021645021645021644, 0.020202020202020204, 0.9235209235209235, 0.8816738816738817, 0.07792207792207792, 0.09523809523809523, 0.08225108225108226, 0.08225108225108226, 0.07936507936507936, 0.08080808080808081, 0.08225108225108226, 0.6363636363636364, 0.7431457431457431, 0.8556998556998557, 0.8932178932178932, 0.9264069264069265, 0.9422799422799423, 0.948051948051948, 0.9292929292929293, 0.9090909090909091, 0.8744588744588745, 0.8181818181818182, 0.6623376623376623, 0.6075036075036075, 0.4098124098124098, 0.3477633477633478, 0.2727272727272727, 0.21645021645021645, 0.1847041847041847, 0.16305916305916307, 0.11976911976911978, 0.09090909090909091, 0.05194805194805195, 0.044733044733044736, 0.049062049062049064, 0.047619047619047616, 0.050505050505050504, 0.049062049062049064, 0.8744588744588745, 0.9191919191919192, 0.8975468975468975, 0.8427128427128427, 0.12554112554112554, 0.1341991341991342, 0.13564213564213565, 0.1240981240981241, 0.1341991341991342, 0.823953823953824, 0.8253968253968254, 0.8311688311688312, 0.8311688311688312, 0.834054834054834, 0.836940836940837, 0.8383838383838383, 0.8412698412698413, 0.8427128427128427, 0.8455988455988456, 0.8484848484848485, 0.8528138528138528, 0.8542568542568543, 0.8614718614718615, 0.8715728715728716, 0.8787878787878788, 0.8917748917748918, 0.9018759018759018, 0.9090909090909091, 0.9321789321789322, 0.9466089466089466, 0.9206349206349206, 0.9018759018759018, 0.8975468975468975, 0.8831168831168831, 0.8759018759018758, 0.8658008658008658, 0.8614718614718615, 0.8542568542568543, 0.84992784992785, 0.847041847041847, 0.8441558441558441, 0.8412698412698413, 0.8383838383838383, 0.836940836940837, 0.8354978354978355, 0.8311688311688312, 0.8311688311688312, 0.8253968253968254, 0.8253968253968254, 0.8225108225108225, 0.5252525252525253, 0.6176046176046176, 0.5988455988455988, 0.5786435786435786, 0.5367965367965368, 0.494949494949495, 0.3621933621933622, 0.6536796536796536, 0.6926406926406926, 0.7359307359307359, 0.7994227994227994, 0.8658008658008658, 0.9105339105339105, 0.9437229437229437, 0.8845598845598845, 0.823953823953824, 0.7518037518037518, 0.70995670995671, 0.670995670995671, 0.6378066378066378, 0.1370851370851371, 0.15728715728715728, 0.15295815295815296, 0.15295815295815296, 0.1414141414141414, 0.13131313131313133, 0.2049062049062049, 0.20202020202020202, 0.20923520923520925, 0.6349206349206349, 0.4213564213564214, 0.3823953823953824, 0.2958152958152958, 0.31024531024531027, 0.25396825396825395, 0.2554112554112554, 0.2453102453102453, 0.20346320346320346, 0.8542568542568543, 0.8715728715728716, 0.8946608946608947, 0.9177489177489178, 0.9235209235209235, 0.9047619047619048, 0.886002886002886, 0.8643578643578643, 0.834054834054834, 0.09523809523809523, 0.08225108225108226, 0.08513708513708514, 0.8556998556998557, 0.07647907647907648, 0.09523809523809523, 0.0735930735930736, 0.08225108225108226, 0.07647907647907648, 0.07503607503607504, 0.07792207792207792, 0.8961038961038961, 0.20634920634920634, 0.08225108225108226, 0.08080808080808081, 0.08225108225108226, 0.08080808080808081, 0.0836940836940837, 0.08225108225108226, 0.08080808080808081, 0.08658008658008658, 0.1544011544011544, 0.14285714285714285, 0.1443001443001443, 0.15728715728715728, 0.5988455988455988, 0.9494949494949495, 0.5367965367965368, 0.4083694083694084, 0.16594516594516595, 0.13997113997113997, 0.12842712842712842, 0.11832611832611832, 0.11832611832611832, 0.1240981240981241, 0.12842712842712842, 0.15007215007215008, 0.14285714285714285, 0.6695526695526696, 0.7907647907647908, 0.8845598845598845, 0.9177489177489178, 0.9336219336219336, 0.9004329004329005, 0.8412698412698413, 0.7474747474747475, 0.25252525252525254, 0.16883116883116883, 0.25685425685425683, 0.2453102453102453, 0.937950937950938, 0.23809523809523808, 0.22077922077922077, 0.22510822510822512, 0.22943722943722944, 0.23088023088023088, 0.23088023088023088, 0.24675324675324675, 0.2712842712842713, 0.2784992784992785, 0.2828282828282828, 0.29004329004329005, 0.2987012987012987, 0.30447330447330445, 0.3463203463203463, 0.48917748917748916], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPARC_Ca_bdg.gap.json b/pfam_gap_rates/SPARC_Ca_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e30ad5aea2032bfa1cb705acf110363c8da0cf5f
--- /dev/null
+++ b/pfam_gap_rates/SPARC_Ca_bdg.gap.json
@@ -0,0 +1 @@
+{"family": "SPARC_Ca_bdg", "n_seqs": 356, "length": 143, "gap_rates": [0.6713483146067416, 0.5365168539325843, 0.5280898876404494, 0.5280898876404494, 0.5224719101123596, 0.5168539325842697, 0.5168539325842697, 0.5140449438202247, 0.5140449438202247, 0.5140449438202247, 0.5140449438202247, 0.5112359550561798, 0.5056179775280899, 0.5, 0.49719101123595505, 0.49157303370786515, 0.49157303370786515, 0.49157303370786515, 0.4859550561797753, 0.4859550561797753, 0.4803370786516854, 0.4859550561797753, 0.48314606741573035, 0.47752808988764045, 0.47191011235955055, 0.4606741573033708, 0.4550561797752809, 0.449438202247191, 0.44662921348314605, 0.449438202247191, 0.449438202247191, 0.45224719101123595, 0.4550561797752809, 0.8792134831460674, 0.8792134831460674, 0.8792134831460674, 0.8820224719101124, 0.8848314606741573, 0.8848314606741573, 0.8932584269662921, 0.8932584269662921, 0.898876404494382, 0.898876404494382, 0.898876404494382, 0.898876404494382, 0.898876404494382, 0.898876404494382, 0.898876404494382, 0.8932584269662921, 0.8932584269662921, 0.8876404494382022, 0.8848314606741573, 0.8848314606741573, 0.8820224719101124, 0.8792134831460674, 0.8792134831460674, 0.8342696629213483, 0.651685393258427, 0.5674157303370787, 0.5280898876404494, 0.5168539325842697, 0.5056179775280899, 0.49719101123595505, 0.45786516853932585, 0.42696629213483145, 0.41292134831460675, 0.39325842696629215, 0.34831460674157305, 0.300561797752809, 0.26685393258426965, 0.25, 0.2303370786516854, 0.20786516853932585, 0.17134831460674158, 0.13202247191011235, 0.10112359550561797, 0.09269662921348315, 0.06460674157303371, 0.05056179775280899, 0.05056179775280899, 0.047752808988764044, 0.028089887640449437, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.75, 0.016853932584269662, 0.016853932584269662, 0.019662921348314606, 0.016853932584269662, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.016853932584269662, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.31179775280898875, 0.30337078651685395, 0.02247191011235955, 0.949438202247191, 0.949438202247191, 0.9466292134831461, 0.016853932584269662, 0.014044943820224719, 0.9044943820224719, 0.9044943820224719, 0.9044943820224719, 0.014044943820224719, 0.016853932584269662, 0.016853932584269662, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.011235955056179775, 0.014044943820224719, 0.016853932584269662, 0.019662921348314606, 0.028089887640449437, 0.03932584269662921, 0.042134831460674156, 0.033707865168539325, 0.03089887640449438, 0.028089887640449437, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.033707865168539325, 0.033707865168539325, 0.06460674157303371, 0.08426966292134831, 0.1151685393258427, 0.12359550561797752], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPASM.gap.json b/pfam_gap_rates/SPASM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4aea06e7e550c0b6ff22105fe7f5b8e95e7ba57e
--- /dev/null
+++ b/pfam_gap_rates/SPASM.gap.json
@@ -0,0 +1 @@
+{"family": "SPASM", "n_seqs": 2526, "length": 84, "gap_rates": [0.22486144101346, 0.8752969121140143, 0.22486144101346, 0.21298495645288995, 0.16825019794140933, 0.10411718131433095, 0.07521773555027712, 0.0498812351543943, 0.0384006334125099, 0.007521773555027712, 0.006334125098970704, 0.004750593824228029, 0.003167062549485352, 0.0023752969121140144, 0.0023752969121140144, 0.0023752969121140144, 0.0023752969121140144, 0.0011876484560570072, 0.000791765637371338, 0.000791765637371338, 0.5253365003958829, 0.5403800475059383, 0.47030878859857483, 0.9433887569279493, 0.9493269992082344, 0.9275534441805225, 0.6730007917656373, 0.4489311163895487, 0.36975455265241486, 0.22961203483768805, 0.41211401425178146, 0.3487727632620744, 0.08273950910530482, 0.9279493269992082, 0.6809184481393508, 0.000395882818685669, 0.0, 0.0, 0.000395882818685669, 0.0, 0.0, 0.007125890736342043, 0.010292953285827395, 0.038796516231195566, 0.026920031670625493, 0.027711797307996833, 0.025336500395882817, 0.00831353919239905, 0.00831353919239905, 0.026524148851939825, 0.8622327790973872, 0.04196357878068092, 0.030087094220110848, 0.02414885193982581, 0.8543151227236738, 0.035629453681710214, 0.023752969121140142, 0.02098178939034046, 0.021773555027711798, 0.9299287410926366, 0.942596991290578, 0.8942992874109263, 0.02454473475851148, 0.026920031670625493, 0.7917656373713381, 0.8954869358669834, 0.6737925574030087, 0.3503562945368171, 0.3103721298495645, 0.2494061757719715, 0.9326999208234362, 0.9109263657957245, 0.10411718131433095, 0.08392715756136183, 0.11441013460015835, 0.20942201108471892, 0.19833729216152018, 0.1726049089469517, 0.13855898653998416, 0.06769596199524941, 0.12034837688044339, 0.13578780680918448, 0.13499604117181313, 0.5340459224069676], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPOC.gap.json b/pfam_gap_rates/SPOC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc1e1a8e7fd2633269e449ae114507cc30489a6b
--- /dev/null
+++ b/pfam_gap_rates/SPOC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SPW.gap.json b/pfam_gap_rates/SPW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..832db0ff4e2d2ab204cd04d9eb5484a84893a30c
--- /dev/null
+++ b/pfam_gap_rates/SPW.gap.json
@@ -0,0 +1 @@
+{"family": "SPW", "n_seqs": 252, "length": 49, "gap_rates": [0.5357142857142857, 0.35714285714285715, 0.25396825396825395, 0.0992063492063492, 0.05555555555555555, 0.01984126984126984, 0.003968253968253968, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.876984126984127, 0.011904761904761904, 0.06349206349206349, 0.051587301587301584, 0.007936507936507936, 0.0, 0.06746031746031746, 0.8888888888888888, 0.023809523809523808, 0.01984126984126984, 0.011904761904761904, 0.003968253968253968, 0.007936507936507936, 0.007936507936507936, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.007936507936507936, 0.015873015873015872, 0.03968253968253968, 0.06746031746031746, 0.0873015873015873, 0.14682539682539683, 0.24206349206349206, 0.3531746031746032, 0.5238095238095238, 0.6428571428571429], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPX.gap.json b/pfam_gap_rates/SPX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c77b47b42e009cc128d49b6ae07687125dad0838
--- /dev/null
+++ b/pfam_gap_rates/SPX.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SQS_PSY.gap.json b/pfam_gap_rates/SQS_PSY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae369dbdc316cfa60cfab22c9a2f1a5aaba4b79d
--- /dev/null
+++ b/pfam_gap_rates/SQS_PSY.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SRAP.gap.json b/pfam_gap_rates/SRAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b5755654476a716de82b59d106a5d2cca40d377
--- /dev/null
+++ b/pfam_gap_rates/SRAP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SRP14.gap.json b/pfam_gap_rates/SRP14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e4f6b91255c6b1ddaa964a8d94b9b6b8b9a0ee5
--- /dev/null
+++ b/pfam_gap_rates/SRP14.gap.json
@@ -0,0 +1 @@
+{"family": "SRP14", "n_seqs": 278, "length": 121, "gap_rates": [0.302158273381295, 0.17985611510791366, 0.1366906474820144, 0.11510791366906475, 0.09352517985611511, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.07553956834532374, 0.07553956834532374, 0.0683453237410072, 0.06115107913669065, 0.06115107913669065, 0.06115107913669065, 0.11510791366906475, 0.10071942446043165, 0.06474820143884892, 0.05755395683453238, 0.07553956834532374, 0.6330935251798561, 0.5503597122302158, 0.05755395683453238, 0.06115107913669065, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.36330935251798563, 0.06474820143884892, 0.4676258992805755, 0.6187050359712231, 0.7194244604316546, 0.7589928057553957, 0.8237410071942446, 0.8633093525179856, 0.9064748201438849, 0.9388489208633094, 0.9496402877697842, 0.9244604316546763, 0.8812949640287769, 0.8561151079136691, 0.7985611510791367, 0.737410071942446, 0.658273381294964, 0.579136690647482, 0.4064748201438849, 0.07194244604316546, 0.28776978417266186, 0.21942446043165467, 0.1510791366906475, 0.12949640287769784, 0.10431654676258993, 0.09352517985611511, 0.07913669064748201, 0.06474820143884892, 0.06115107913669065, 0.04316546762589928, 0.03597122302158273, 0.02877697841726619, 0.014388489208633094, 0.007194244604316547, 0.10431654676258993, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.01079136690647482, 0.01079136690647482, 0.7517985611510791, 0.802158273381295, 0.9136690647482014, 0.9316546762589928, 0.9460431654676259, 0.9136690647482014, 0.8093525179856115, 0.7661870503597122, 0.7014388489208633, 0.6942446043165468, 0.6870503597122302, 0.564748201438849, 0.01079136690647482, 0.01079136690647482, 0.014388489208633094, 0.02877697841726619, 0.03597122302158273, 0.046762589928057555, 0.046762589928057555, 0.0683453237410072, 0.06474820143884892, 0.06115107913669065, 0.06115107913669065, 0.0683453237410072, 0.06115107913669065, 0.06115107913669065, 0.06115107913669065, 0.0683453237410072, 0.0683453237410072, 0.0683453237410072, 0.0683453237410072, 0.07553956834532374, 0.07553956834532374, 0.08273381294964029, 0.09352517985611511, 0.11870503597122302, 0.13309352517985612, 0.1510791366906475, 0.19784172661870503, 0.22302158273381295], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRP54.gap.json b/pfam_gap_rates/SRP54.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77eb4d52d476210c666d83b4298efe9fe29f7c11
--- /dev/null
+++ b/pfam_gap_rates/SRP54.gap.json
@@ -0,0 +1 @@
+{"family": "SRP54", "n_seqs": 5000, "length": 206, "gap_rates": [0.5482, 0.1702, 0.0742, 0.0386, 0.0358, 0.0348, 0.0344, 0.0344, 0.0338, 0.0334, 0.0332, 0.0322, 0.0318, 0.032, 0.0318, 0.032, 0.0316, 0.0312, 0.0312, 0.031, 0.0302, 0.0298, 0.0298, 0.0298, 0.03, 0.0296, 0.0314, 0.0322, 0.9458, 0.7204, 0.0306, 0.03, 0.0298, 0.0302, 0.029, 0.0292, 0.029, 0.029, 0.029, 0.029, 0.0292, 0.0286, 0.0292, 0.029, 0.0292, 0.0292, 0.0288, 0.0292, 0.029, 0.0288, 0.0288, 0.0284, 0.0282, 0.028, 0.028, 0.0288, 0.0296, 0.0296, 0.0336, 0.0308, 0.0386, 0.0406, 0.0652, 0.9272, 0.067, 0.0702, 0.1274, 0.0766, 0.0664, 0.074, 0.0524, 0.05, 0.0456, 0.0444, 0.0468, 0.0446, 0.0438, 0.0416, 0.0398, 0.0428, 0.0426, 0.0414, 0.0422, 0.0476, 0.0988, 0.092, 0.0554, 0.0446, 0.0276, 0.0262, 0.0258, 0.026, 0.0258, 0.026, 0.0264, 0.0268, 0.0278, 0.027, 0.0262, 0.0268, 0.0272, 0.0274, 0.027, 0.0266, 0.0242, 0.0238, 0.0234, 0.0234, 0.0236, 0.0244, 0.0252, 0.025, 0.0258, 0.028, 0.0292, 0.635, 0.6452, 0.6896, 0.683, 0.6398, 0.6224, 0.0336, 0.0246, 0.024, 0.0246, 0.0246, 0.0242, 0.0236, 0.0236, 0.0238, 0.0238, 0.0236, 0.0234, 0.0234, 0.0238, 0.024, 0.0242, 0.0244, 0.024, 0.0242, 0.0244, 0.0242, 0.0242, 0.0244, 0.0246, 0.0264, 0.0274, 0.0272, 0.025, 0.0308, 0.0272, 0.0266, 0.0254, 0.0256, 0.0258, 0.0258, 0.0258, 0.0258, 0.0258, 0.0262, 0.0262, 0.0276, 0.028, 0.0274, 0.0278, 0.0282, 0.0282, 0.0284, 0.0282, 0.0282, 0.0286, 0.029, 0.0286, 0.0288, 0.0296, 0.0298, 0.03, 0.0308, 0.0306, 0.0306, 0.0306, 0.0306, 0.0306, 0.0308, 0.0308, 0.0312, 0.0318, 0.0324, 0.8942, 0.0334, 0.034, 0.0342, 0.0344, 0.0348, 0.0356, 0.0364, 0.037, 0.0374, 0.0388, 0.0402, 0.0414, 0.0462, 0.0542, 0.069, 0.1284, 0.5978], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/STIMATE.gap.json b/pfam_gap_rates/STIMATE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62f2041000c4a9cf589a16ae0089e15ad9f77908
--- /dev/null
+++ b/pfam_gap_rates/STIMATE.gap.json
@@ -0,0 +1 @@
+{"family": "STIMATE", "n_seqs": 276, "length": 152, "gap_rates": [0.10507246376811594, 0.10144927536231885, 0.09057971014492754, 0.08333333333333333, 0.07971014492753623, 0.07971014492753623, 0.07971014492753623, 0.07971014492753623, 0.07608695652173914, 0.06884057971014493, 0.06884057971014493, 0.06884057971014493, 0.07608695652173914, 0.06884057971014493, 0.06884057971014493, 0.06884057971014493, 0.06884057971014493, 0.06884057971014493, 0.06521739130434782, 0.06521739130434782, 0.06884057971014493, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06884057971014493, 0.06884057971014493, 0.07608695652173914, 0.08333333333333333, 0.09420289855072464, 0.11231884057971014, 0.7210144927536232, 0.7246376811594203, 0.7246376811594203, 0.5615942028985508, 0.10507246376811594, 0.09782608695652174, 0.08333333333333333, 0.07608695652173914, 0.07608695652173914, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.06884057971014493, 0.9311594202898551, 0.9311594202898551, 0.9347826086956522, 0.9384057971014492, 0.9456521739130435, 0.9492753623188406, 0.9492753623188406, 0.9492753623188406, 0.9492753623188406, 0.9492753623188406, 0.9420289855072463, 0.9384057971014492, 0.9311594202898551, 0.9311594202898551, 0.9239130434782609, 0.06884057971014493, 0.07246376811594203, 0.9057971014492754, 0.9239130434782609, 0.9057971014492754, 0.8913043478260869, 0.06521739130434782, 0.9202898550724637, 0.18840579710144928, 0.9492753623188406, 0.9456521739130435, 0.14492753623188406, 0.08333333333333333, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.050724637681159424, 0.050724637681159424, 0.04710144927536232, 0.04710144927536232, 0.04710144927536232, 0.04710144927536232, 0.04710144927536232, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.043478260869565216, 0.036231884057971016, 0.036231884057971016, 0.028985507246376812, 0.028985507246376812, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.036231884057971016, 0.043478260869565216, 0.043478260869565216, 0.12681159420289856, 0.2427536231884058, 0.5797101449275363, 0.10507246376811594, 0.10507246376811594, 0.043478260869565216, 0.03985507246376811, 0.043478260869565216, 0.043478260869565216, 0.050724637681159424, 0.050724637681159424, 0.04710144927536232, 0.04710144927536232, 0.04710144927536232, 0.04710144927536232, 0.9456521739130435, 0.10507246376811594, 0.23550724637681159, 0.06159420289855073, 0.050724637681159424, 0.050724637681159424, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.06159420289855073, 0.06159420289855073, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.07246376811594203, 0.07246376811594203, 0.07608695652173914, 0.07971014492753623, 0.08333333333333333, 0.08333333333333333, 0.09057971014492754, 0.09420289855072464, 0.09420289855072464, 0.09782608695652174, 0.09782608695652174, 0.10144927536231885, 0.6594202898550725], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SUA5.gap.json b/pfam_gap_rates/SUA5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1b5f351e6986ac87806b5250e6b5384d9fddf68
--- /dev/null
+++ b/pfam_gap_rates/SUA5.gap.json
@@ -0,0 +1 @@
+{"family": "SUA5", "n_seqs": 1215, "length": 200, "gap_rates": [0.4378600823045268, 0.33497942386831275, 0.23292181069958848, 0.17037037037037037, 0.151440329218107, 0.13662551440329218, 0.13415637860082305, 0.1308641975308642, 0.12921810699588476, 0.13004115226337448, 0.8707818930041152, 0.902880658436214, 0.939917695473251, 0.922633744855967, 0.8765432098765432, 0.8707818930041152, 0.10534979423868313, 0.11522633744855967, 0.1522633744855967, 0.3325102880658436, 0.4823045267489712, 0.7094650205761317, 0.908641975308642, 0.8246913580246914, 0.6032921810699589, 0.4205761316872428, 0.2411522633744856, 0.12181069958847737, 0.11440329218106995, 0.0897119341563786, 0.4353909465020576, 0.194238683127572, 0.16872427983539096, 0.16872427983539096, 0.015637860082304528, 0.8238683127572016, 0.8699588477366255, 0.9473251028806584, 0.8460905349794239, 0.8148148148148148, 0.011522633744855968, 0.009876543209876543, 0.009876543209876543, 0.00905349794238683, 0.00823045267489712, 0.007407407407407408, 0.007407407407407408, 0.006584362139917695, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.011522633744855968, 0.013991769547325103, 0.013991769547325103, 0.022222222222222223, 0.027160493827160494, 0.07489711934156379, 0.12098765432098765, 0.16049382716049382, 0.21728395061728395, 0.37448559670781895, 0.497119341563786, 0.5530864197530864, 0.7588477366255144, 0.8065843621399177, 0.8419753086419753, 0.8625514403292182, 0.8946502057613168, 0.9127572016460905, 0.9374485596707819, 0.9448559670781893, 0.922633744855967, 0.902880658436214, 0.8831275720164609, 0.8551440329218107, 0.8255144032921811, 0.7802469135802469, 0.7176954732510288, 0.5316872427983539, 0.4551440329218107, 0.30864197530864196, 0.1934156378600823, 0.1382716049382716, 0.10699588477366255, 0.06255144032921811, 0.023868312757201648, 0.014814814814814815, 0.013991769547325103, 0.011522633744855968, 0.011522633744855968, 0.00411522633744856, 0.3934156378600823, 0.3983539094650206, 0.39423868312757204, 0.01316872427983539, 0.08148148148148149, 0.12345679012345678, 0.16213991769547326, 0.17366255144032922, 0.20493827160493827, 0.23786008230452674, 0.2938271604938272, 0.42386831275720166, 0.7448559670781894, 0.8296296296296296, 0.8707818930041152, 0.9004115226337449, 0.9168724279835391, 0.9251028806584363, 0.9325102880658436, 0.9358024691358025, 0.939917695473251, 0.9415637860082304, 0.9432098765432099, 0.9440329218106996, 0.9465020576131687, 0.9448559670781893, 0.9440329218106996, 0.9415637860082304, 0.939917695473251, 0.9382716049382716, 0.9349794238683128, 0.928395061728395, 0.9218106995884774, 0.9094650205761317, 0.8823045267489712, 0.8510288065843621, 0.7991769547325103, 0.6707818930041153, 0.36049382716049383, 0.25925925925925924, 0.2189300411522634, 0.1934156378600823, 0.16790123456790124, 0.1382716049382716, 0.102880658436214, 0.07325102880658436, 0.040329218106995884, 0.04197530864197531, 0.03209876543209877, 0.005761316872427984, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.005761316872427984, 0.005761316872427984, 0.005761316872427984, 0.005761316872427984, 0.005761316872427984, 0.005761316872427984, 0.005761316872427984, 0.005761316872427984, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.0049382716049382715, 0.8740740740740741, 0.01646090534979424, 0.03621399176954732, 0.012345679012345678, 0.009876543209876543, 0.007407407407407408, 0.00823045267489712, 0.01316872427983539, 0.010699588477366255, 0.010699588477366255, 0.010699588477366255, 0.018930041152263374, 0.00823045267489712, 0.00823045267489712, 0.9448559670781893, 0.9234567901234568, 0.00905349794238683, 0.00905349794238683, 0.009876543209876543, 0.011522633744855968, 0.009876543209876543, 0.009876543209876543, 0.009876543209876543, 0.009876543209876543, 0.009876543209876543, 0.009876543209876543, 0.010699588477366255, 0.011522633744855968, 0.011522633744855968, 0.011522633744855968, 0.01316872427983539, 0.03539094650205761, 0.25020576131687244], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SURF4.gap.json b/pfam_gap_rates/SURF4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f2eaf1a8ef80c7f2c09331fe365f90f0b599ff7
--- /dev/null
+++ b/pfam_gap_rates/SURF4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SatD.gap.json b/pfam_gap_rates/SatD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37982ef039b0ff6974acdca1b2cb2cd6c967bc0f
--- /dev/null
+++ b/pfam_gap_rates/SatD.gap.json
@@ -0,0 +1 @@
+{"family": "SatD", "n_seqs": 104, "length": 216, "gap_rates": [0.6730769230769231, 0.46153846153846156, 0.28846153846153844, 0.1346153846153846, 0.125, 0.10576923076923077, 0.10576923076923077, 0.09615384615384616, 0.09615384615384616, 0.09615384615384616, 0.09615384615384616, 0.09615384615384616, 0.09615384615384616, 0.1346153846153846, 0.11538461538461539, 0.125, 0.1346153846153846, 0.125, 0.11538461538461539, 0.125, 0.10576923076923077, 0.0673076923076923, 0.0673076923076923, 0.057692307692307696, 0.057692307692307696, 0.04807692307692308, 0.057692307692307696, 0.057692307692307696, 0.0673076923076923, 0.057692307692307696, 0.04807692307692308, 0.057692307692307696, 0.057692307692307696, 0.09615384615384616, 0.17307692307692307, 0.21153846153846154, 0.23076923076923078, 0.25, 0.23076923076923078, 0.1346153846153846, 0.09615384615384616, 0.04807692307692308, 0.0673076923076923, 0.028846153846153848, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.028846153846153848, 0.038461538461538464, 0.038461538461538464, 0.028846153846153848, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.028846153846153848, 0.019230769230769232, 0.028846153846153848, 0.019230769230769232, 0.019230769230769232, 0.0, 0.9326923076923077, 0.057692307692307696, 0.009615384615384616, 0.6538461538461539, 0.009615384615384616, 0.0, 0.009615384615384616, 0.009615384615384616, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009615384615384616, 0.09615384615384616, 0.19230769230769232, 0.10576923076923077, 0.09615384615384616, 0.028846153846153848, 0.057692307692307696, 0.019230769230769232, 0.009615384615384616, 0.019230769230769232, 0.057692307692307696, 0.04807692307692308, 0.11538461538461539, 0.019230769230769232, 0.019230769230769232, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.057692307692307696, 0.09615384615384616, 0.125, 0.14423076923076922, 0.22115384615384615, 0.34615384615384615, 0.375, 0.38461538461538464, 0.36538461538461536, 0.3076923076923077, 0.25, 0.21153846153846154, 0.15384615384615385, 0.16346153846153846, 0.15384615384615385, 0.18269230769230768, 0.19230769230769232, 0.20192307692307693, 0.18269230769230768, 0.18269230769230768, 0.16346153846153846, 0.8269230769230769, 0.9038461538461539, 0.9326923076923077, 0.8846153846153846, 0.7788461538461539, 0.16346153846153846, 0.18269230769230768, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.17307692307692307, 0.18269230769230768, 0.19230769230769232, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.20192307692307693, 0.20192307692307693, 0.22115384615384615, 0.25, 0.3076923076923077, 0.33653846153846156, 0.34615384615384615, 0.375, 0.38461538461538464, 0.4326923076923077, 0.5, 0.5769230769230769, 0.6153846153846154, 0.5961538461538461, 0.5576923076923077, 0.5576923076923077, 0.5384615384615384, 0.41346153846153844, 0.40384615384615385, 0.38461538461538464, 0.3557692307692308, 0.3557692307692308, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.3557692307692308, 0.3557692307692308, 0.3557692307692308, 0.36538461538461536, 0.375, 0.375, 0.38461538461538464, 0.3942307692307692, 0.3942307692307692, 0.4230769230769231, 0.49038461538461536, 0.5865384615384616, 0.6538461538461539, 0.7019230769230769, 0.75, 0.7884615384615384, 0.8173076923076923, 0.8269230769230769, 0.8365384615384616, 0.8461538461538461, 0.875, 0.9134615384615384, 0.9326923076923077, 0.9326923076923077], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SbcD_C.gap.json b/pfam_gap_rates/SbcD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9602ac6503b542c318a7ab0a0644f2350e0a6ca
--- /dev/null
+++ b/pfam_gap_rates/SbcD_C.gap.json
@@ -0,0 +1 @@
+{"family": "SbcD_C", "n_seqs": 647, "length": 110, "gap_rates": [0.642967542503864, 0.31839258114374036, 0.12210200927357033, 0.080370942812983, 0.0633693972179289, 0.05873261205564142, 0.05409582689335394, 0.05100463678516229, 0.04945904173106646, 0.9041731066460588, 0.8531684698608965, 0.03400309119010819, 0.02936630602782071, 0.021638330757341576, 0.01854714064914992, 0.017001545595054096, 0.013910355486862442, 0.015455950540958269, 0.00927357032457496, 0.5471406491499228, 0.7897990726429676, 0.910355486862442, 0.9428129829984544, 0.8608964451313755, 0.7032457496136012, 0.40030911901081917, 0.04173106646058733, 0.35857805255023184, 0.2921174652241113, 0.16537867078825347, 0.14219474497681608, 0.07418856259659969, 0.0571870170015456, 0.05564142194744977, 0.00463678516228748, 0.00463678516228748, 0.00463678516228748, 0.00463678516228748, 0.0030911901081916537, 0.0030911901081916537, 0.0030911901081916537, 0.0030911901081916537, 0.910355486862442, 0.0030911901081916537, 0.0061823802163833074, 0.0030911901081916537, 0.0030911901081916537, 0.0030911901081916537, 0.0015455950540958269, 0.012364760432766615, 0.0077279752704791345, 0.00463678516228748, 0.0015455950540958269, 0.0015455950540958269, 0.0015455950540958269, 0.0015455950540958269, 0.0015455950540958269, 0.0030911901081916537, 0.0030911901081916537, 0.0030911901081916537, 0.0030911901081916537, 0.00463678516228748, 0.00463678516228748, 0.7341576506955177, 0.7279752704791345, 0.7202472952086554, 0.723338485316847, 0.010819165378670788, 0.012364760432766615, 0.012364760432766615, 0.42194744976816073, 0.06027820710973725, 0.05100463678516229, 0.04945904173106646, 0.8408037094281299, 0.9041731066460588, 0.6197836166924265, 0.09273570324574962, 0.3400309119010819, 0.2936630602782071, 0.9428129829984544, 0.11591962905718702, 0.0865533230293663, 0.03709428129829984, 0.03709428129829984, 0.03863987635239567, 0.0401854714064915, 0.0401854714064915, 0.04173106646058733, 0.0401854714064915, 0.04327666151468315, 0.04945904173106646, 0.04945904173106646, 0.04482225656877898, 0.05255023183925812, 0.04945904173106646, 0.04791344667697063, 0.04791344667697063, 0.04945904173106646, 0.04945904173106646, 0.05255023183925812, 0.05409582689335394, 0.0571870170015456, 0.061823802163833076, 0.06646058732612056, 0.08500772797527048, 0.1267387944358578, 0.25656877897990726, 0.5115919629057187, 0.8315301391035549], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Scs3p.gap.json b/pfam_gap_rates/Scs3p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32c00b051267166bcaab940f5401d712c7e49ff6
--- /dev/null
+++ b/pfam_gap_rates/Scs3p.gap.json
@@ -0,0 +1 @@
+{"family": "Scs3p", "n_seqs": 260, "length": 320, "gap_rates": [0.6576923076923077, 0.2846153846153846, 0.23076923076923078, 0.2230769230769231, 0.21153846153846154, 0.20384615384615384, 0.2, 0.19615384615384615, 0.19230769230769232, 0.18461538461538463, 0.17307692307692307, 0.17307692307692307, 0.16538461538461538, 0.16538461538461538, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16538461538461538, 0.16538461538461538, 0.16538461538461538, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.16153846153846155, 0.18076923076923077, 0.9192307692307692, 0.9230769230769231, 0.9384615384615385, 0.9423076923076923, 0.95, 0.9384615384615385, 0.9307692307692308, 0.9230769230769231, 0.9192307692307692, 0.20384615384615384, 0.28846153846153844, 0.6538461538461539, 0.5423076923076923, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SdrD_B.gap.json b/pfam_gap_rates/SdrD_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..901b9051b84dbd67f6c0ffe083e284b6447d2f31
--- /dev/null
+++ b/pfam_gap_rates/SdrD_B.gap.json
@@ -0,0 +1 @@
+{"family": "SdrD_B", "n_seqs": 1676, "length": 130, "gap_rates": [0.9242243436754176, 0.34307875894988066, 0.15035799522673032, 0.12291169451073986, 0.09307875894988067, 0.07040572792362769, 0.059665871121718374, 0.04832935560859188, 0.045346062052505964, 0.0441527446300716, 0.04713603818615752, 0.042362768496420046, 0.03639618138424821, 0.035202863961813845, 0.03818615751789976, 0.03758949880668258, 0.03579952267303103, 0.026252983293556086, 0.02386634844868735, 0.017899761336515514, 0.016109785202863963, 0.9254176610978521, 0.03400954653937947, 0.00954653937947494, 0.010143198090692125, 0.0065632458233890216, 0.0059665871121718375, 0.0053699284009546535, 0.003579952267303103, 0.003579952267303103, 0.003579952267303103, 0.0029832935560859188, 0.6718377088305489, 0.7649164677804295, 0.7840095465393795, 0.8120525059665871, 0.8973747016706444, 0.7959427207637232, 0.7780429594272077, 0.7541766109785203, 0.6599045346062052, 0.06980906921241051, 0.0405727923627685, 0.030429594272076373, 0.02684964200477327, 0.016109785202863963, 0.011933174224343675, 0.016706443914081145, 0.038782816229116945, 0.9397374701670644, 0.7452267303102625, 0.04892601431980907, 0.011336515513126491, 0.0053699284009546535, 0.0029832935560859188, 0.004176610978520286, 0.007159904534606206, 0.0029832935560859188, 0.0029832935560859188, 0.0017899761336515514, 0.0017899761336515514, 0.002386634844868735, 0.0005966587112171838, 0.0065632458233890216, 0.0017899761336515514, 0.038782816229116945, 0.00954653937947494, 0.011933174224343675, 0.012529832935560859, 0.013126491646778043, 0.012529832935560859, 0.8752983293556086, 0.014916467780429593, 0.014916467780429593, 0.014916467780429593, 0.015513126491646777, 0.019689737470167064, 0.9218377088305489, 0.9451073985680191, 0.918854415274463, 0.038782816229116945, 0.046539379474940336, 0.8025059665871122, 0.07517899761336516, 0.09248210023866349, 0.10143198090692124, 0.11634844868735084, 0.9105011933174224, 0.162291169451074, 0.1807875894988067, 0.19451073985680192, 0.22911694510739858, 0.27386634844868735, 0.38066825775656327, 0.40692124105011934, 0.3860381861575179, 0.41646778042959426, 0.43556085918854415, 0.45465393794749404, 0.4785202863961814, 0.5381861575178998, 0.5065632458233891, 0.5089498806682577, 0.5155131264916468, 0.5346062052505967, 0.5739856801909308, 0.6026252983293556, 0.6402147971360382, 0.630071599045346, 0.6533412887828163, 0.6473747016706444, 0.6420047732696897, 0.6437947494033412, 0.6497613365155132, 0.6575178997613366, 0.6569212410501193, 0.6616945107398569, 0.6682577565632458, 0.6748210023866349, 0.6825775656324582, 0.7159904534606205, 0.7082338902147971, 0.7064439140811456, 0.7136038186157518, 0.7153937947494033, 0.7177804295942721, 0.7201670644391408, 0.7249403341288783, 0.7350835322195705, 0.7780429594272077], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sec23_trunk.gap.json b/pfam_gap_rates/Sec23_trunk.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb05a50aed041cbdf90c9b4f6a5da98de1434cb8
--- /dev/null
+++ b/pfam_gap_rates/Sec23_trunk.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec3-PIP2_bind.gap.json b/pfam_gap_rates/Sec3-PIP2_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3109ed870e11ac08fdb562526f0c53eeb47f4a91
--- /dev/null
+++ b/pfam_gap_rates/Sec3-PIP2_bind.gap.json
@@ -0,0 +1 @@
+{"family": "Sec3-PIP2_bind", "n_seqs": 287, "length": 114, "gap_rates": [0.6794425087108014, 0.27177700348432055, 0.14634146341463414, 0.13240418118466898, 0.10452961672473868, 0.10452961672473868, 0.10452961672473868, 0.10452961672473868, 0.09059233449477352, 0.08013937282229965, 0.059233449477351915, 0.05574912891986063, 0.04529616724738676, 0.03832752613240418, 0.9477351916376306, 0.9442508710801394, 0.32752613240418116, 0.0975609756097561, 0.6306620209059234, 0.445993031358885, 0.42857142857142855, 0.03832752613240418, 0.03484320557491289, 0.03484320557491289, 0.03484320557491289, 0.03484320557491289, 0.03484320557491289, 0.0313588850174216, 0.0313588850174216, 0.0313588850174216, 0.03832752613240418, 0.03484320557491289, 0.04878048780487805, 0.04529616724738676, 0.7282229965156795, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.024390243902439025, 0.017421602787456445, 0.013937282229965157, 0.013937282229965157, 0.010452961672473868, 0.010452961672473868, 0.010452961672473868, 0.010452961672473868, 0.010452961672473868, 0.010452961672473868, 0.010452961672473868, 0.017421602787456445, 0.017421602787456445, 0.020905923344947737, 0.027874564459930314, 0.7735191637630662, 0.7770034843205574, 0.7804878048780488, 0.7839721254355401, 0.8815331010452961, 0.8815331010452961, 0.8850174216027874, 0.8815331010452961, 0.7839721254355401, 0.7839721254355401, 0.7804878048780488, 0.7770034843205574, 0.7700348432055749, 0.23344947735191637, 0.27177700348432055, 0.23344947735191637, 0.1916376306620209, 0.020905923344947737, 0.020905923344947737, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.8362369337979094, 0.8397212543554007, 0.8397212543554007, 0.8397212543554007, 0.8397212543554007, 0.8362369337979094, 0.8222996515679443, 0.024390243902439025, 0.8606271777003485, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.027874564459930314, 0.0313588850174216, 0.03484320557491289, 0.03484320557491289, 0.041811846689895474, 0.07665505226480836, 0.1602787456445993, 0.519163763066202], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sec61_beta.gap.json b/pfam_gap_rates/Sec61_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12c1b9b32d299325881aa0506bf6b0936a6dbb3c
--- /dev/null
+++ b/pfam_gap_rates/Sec61_beta.gap.json
@@ -0,0 +1 @@
+{"family": "Sec61_beta", "n_seqs": 417, "length": 42, "gap_rates": [0.513189448441247, 0.2565947242206235, 0.14628297362110312, 0.11750599520383694, 0.1079136690647482, 0.07913669064748201, 0.07194244604316546, 0.05515587529976019, 0.05275779376498801, 0.05275779376498801, 0.9280575539568345, 0.045563549160671464, 0.04316546762589928, 0.0407673860911271, 0.03117505995203837, 0.02158273381294964, 0.02158273381294964, 0.016786570743405275, 0.009592326139088728, 0.009592326139088728, 0.007194244604316547, 0.007194244604316547, 0.009592326139088728, 0.011990407673860911, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.016786570743405275, 0.016786570743405275, 0.023980815347721823, 0.026378896882494004, 0.026378896882494004, 0.026378896882494004, 0.026378896882494004, 0.02877697841726619, 0.03117505995203837, 0.03117505995203837, 0.03357314148681055, 0.03836930455635491, 0.05995203836930456, 0.08393285371702638, 0.23501199040767387], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sec8_exocyst.gap.json b/pfam_gap_rates/Sec8_exocyst.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3cb88d35fd12d04a1ac69b910fcc2e7afa6f4eab
--- /dev/null
+++ b/pfam_gap_rates/Sec8_exocyst.gap.json
@@ -0,0 +1 @@
+{"family": "Sec8_exocyst", "n_seqs": 266, "length": 142, "gap_rates": [0.9172932330827067, 0.5263157894736842, 0.48872180451127817, 0.4473684210526316, 0.41729323308270677, 0.41729323308270677, 0.41353383458646614, 0.41353383458646614, 0.41353383458646614, 0.41353383458646614, 0.40977443609022557, 0.40977443609022557, 0.40977443609022557, 0.40977443609022557, 0.40977443609022557, 0.41353383458646614, 0.40977443609022557, 0.39849624060150374, 0.39097744360902253, 0.38345864661654133, 0.37593984962406013, 0.37593984962406013, 0.37218045112781956, 0.37218045112781956, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.36466165413533835, 0.3609022556390977, 0.36466165413533835, 0.35714285714285715, 0.35714285714285715, 0.35714285714285715, 0.35714285714285715, 0.5338345864661654, 0.5225563909774437, 0.5939849624060151, 0.575187969924812, 0.46616541353383456, 0.31954887218045114, 0.2932330827067669, 0.2518796992481203, 0.18421052631578946, 0.16917293233082706, 0.14661654135338345, 0.12781954887218044, 0.12030075187969924, 0.10526315789473684, 0.07894736842105263, 0.06390977443609022, 0.05263157894736842, 0.041353383458646614, 0.03383458646616541, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.02631578947368421, 0.022556390977443608, 0.022556390977443608, 0.018796992481203006, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.015037593984962405, 0.018796992481203006, 0.018796992481203006, 0.022556390977443608, 0.03007518796992481, 0.03007518796992481, 0.03383458646616541, 0.041353383458646614, 0.041353383458646614, 0.03759398496240601, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03759398496240601, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.04887218045112782, 0.06015037593984962, 0.06390977443609022, 0.06390977443609022, 0.07142857142857142, 0.09022556390977443, 0.09774436090225563, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.12030075187969924, 0.15789473684210525, 0.2819548872180451, 0.8984962406015038], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SecD_SecF.gap.json b/pfam_gap_rates/SecD_SecF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be6f0fde40bd82ea842d1769325a61a2f21ca1e6
--- /dev/null
+++ b/pfam_gap_rates/SecD_SecF.gap.json
@@ -0,0 +1 @@
+{"family": "SecD_SecF", "n_seqs": 3999, "length": 202, "gap_rates": [0.9482370592648162, 0.9039759939984996, 0.8559639909977494, 0.8129532383095774, 0.7754438609652413, 0.746686671667917, 0.716929232308077, 0.6914228557139285, 0.6761690422605652, 0.9422355588897224, 0.48612153038259565, 0.3083270817704426, 0.1760440110027507, 0.10977744436109027, 0.06501625406351588, 0.04576144036009002, 0.03675918979744936, 0.032758189547386844, 0.03075768942235559, 0.029257314328582147, 0.0277569392348087, 0.02700675168792198, 0.026006501625406353, 0.025506376594148537, 0.02525631407851963, 0.02525631407851963, 0.025006251562890724, 0.024256064016004, 0.022255563890972743, 0.021255313828457113, 0.020255063765941484, 0.020005001250312578, 0.018504626156539136, 0.016754188547136784, 0.015253813453363341, 0.012753188297074268, 0.012003000750187547, 0.012003000750187547, 0.012003000750187547, 0.011502875718929733, 0.011502875718929733, 0.010752688172043012, 0.010752688172043012, 0.010502625656414103, 0.009502375593898474, 0.011752938234558639, 0.012253063265816454, 0.0207551887971993, 0.011752938234558639, 0.016004001000250064, 0.011002750687671918, 0.035508877219304825, 0.9062265566391597, 0.12053013253313329, 0.927231807951988, 0.1037759439859965, 0.0935233808452113, 0.015503875968992248, 0.010002500625156289, 0.012253063265816454, 0.009752438109527382, 0.01625406351587897, 0.01700425106276569, 0.010252563140785197, 0.011002750687671918, 0.012253063265816454, 0.0172543135783946, 0.0345086271567892, 0.02175543885971493, 0.020255063765941484, 0.015753938484621154, 0.015503875968992248, 0.013253313328332083, 0.01700425106276569, 0.012503125781445362, 0.013003250812703177, 0.012753188297074268, 0.01350337584396099, 0.012003000750187547, 0.012253063265816454, 0.8282070517629407, 0.8304576144036009, 0.9482370592648162, 0.8294573643410853, 0.8169542385596399, 0.012253063265816454, 0.011502875718929733, 0.011252813203300824, 0.011502875718929733, 0.011752938234558639, 0.011752938234558639, 0.011752938234558639, 0.011502875718929733, 0.011252813203300824, 0.011252813203300824, 0.011502875718929733, 0.013003250812703177, 0.013753438359589898, 0.014253563390847712, 0.014253563390847712, 0.014003500875218804, 0.014753688422105527, 0.015003750937734433, 0.014003500875218804, 0.014003500875218804, 0.014003500875218804, 0.013753438359589898, 0.013753438359589898, 0.014253563390847712, 0.014253563390847712, 0.014503625906476619, 0.014503625906476619, 0.015003750937734433, 0.015003750937734433, 0.015003750937734433, 0.015003750937734433, 0.015253813453363341, 0.9127281820455114, 0.9247311827956989, 0.8924731182795699, 0.04776194048512128, 0.04326081520380095, 0.03350837709427357, 0.4533633408352088, 0.4386096524131033, 0.03250812703175794, 0.028507126781695424, 0.025756439109777443, 0.025506376594148537, 0.025756439109777443, 0.02275568892223056, 0.020505126281570394, 0.020255063765941484, 0.020005001250312578, 0.01975493873468367, 0.019504876219054765, 0.020255063765941484, 0.019504876219054765, 0.01975493873468367, 0.023255813953488372, 0.05576394098524631, 0.023505876469117278, 0.09902475618904726, 0.025756439109777443, 0.025756439109777443, 0.02525631407851963, 0.0207551887971993, 0.020505126281570394, 0.021005251312828207, 0.020505126281570394, 0.9442360590147537, 0.023505876469117278, 0.02275568892223056, 0.02175543885971493, 0.020255063765941484, 0.019504876219054765, 0.01975493873468367, 0.020505126281570394, 0.0207551887971993, 0.021505376344086023, 0.02175543885971493, 0.021505376344086023, 0.02275568892223056, 0.029257314328582147, 0.9347336834208552, 0.9372343085771443, 0.9357339334833709, 0.9264816204051013, 0.024256064016004, 0.024506126531632907, 0.023755938984746188, 0.024506126531632907, 0.024256064016004, 0.024256064016004, 0.024256064016004, 0.024256064016004, 0.024756189047261814, 0.024756189047261814, 0.025006251562890724, 0.02525631407851963, 0.02525631407851963, 0.025506376594148537, 0.025756439109777443, 0.028507126781695424, 0.03150787696924231, 0.03425856464116029, 0.0347586896724181, 0.041760440110027504, 0.043010752688172046, 0.04576144036009002, 0.05776444111027757, 0.07126781695423856, 0.0795198799699925, 0.09877469367341836, 0.11977994498624656, 0.13353338334583645, 0.1652913228307077, 0.22330582645661415, 0.28632158039509875, 0.3590897724431108, 0.5323830957739435, 0.7721930482620655], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SelB-wing_3.gap.json b/pfam_gap_rates/SelB-wing_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..131caf0979f740580d40137ff293d459c174a3e9
--- /dev/null
+++ b/pfam_gap_rates/SelB-wing_3.gap.json
@@ -0,0 +1 @@
+{"family": "SelB-wing_3", "n_seqs": 427, "length": 48, "gap_rates": [0.9086651053864169, 0.5292740046838408, 0.3161592505854801, 0.24355971896955503, 0.1873536299765808, 0.12412177985948478, 0.7728337236533958, 0.05152224824355972, 0.01405152224824356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00234192037470726, 0.00702576112412178, 0.03981264637002342, 0.0585480093676815, 0.07728337236533958, 0.16159250585480095, 0.43559718969555034], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sema.gap.json b/pfam_gap_rates/Sema.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7955ce6729f3871662c4b370090189a509e98892
--- /dev/null
+++ b/pfam_gap_rates/Sema.gap.json
@@ -0,0 +1 @@
+{"family": "Sema", "n_seqs": 1101, "length": 563, "gap_rates": [0.7447774750227066, 0.5413260672116258, 0.48864668483197093, 0.46503178928247046, 0.44686648501362397, 0.4323342415985468, 0.4223433242506812, 0.3505903723887375, 0.32879200726612173, 0.3260672116257947, 0.3215258855585831, 0.31970935513169846, 0.3188010899182561, 0.3188010899182561, 0.3169845594913715, 0.3060853769300636, 0.29791099000908267, 0.29791099000908267, 0.29791099000908267, 0.29791099000908267, 0.298819255222525, 0.29791099000908267, 0.29791099000908267, 0.5286103542234333, 0.3006357856494096, 0.3033605812897366, 0.2970027247956403, 0.29518619436875565, 0.5322434150772025, 0.5422343324250681, 0.9137148047229791, 0.3315168029064487, 0.40599455040871935, 0.36330608537693004, 0.3787465940054496, 0.6094459582198002, 0.7384196185286104, 0.36966394187102636, 0.5513169845594914, 0.5331516802906449, 0.5258855585831063, 0.5304268846503178, 0.5258855585831063, 0.5304268846503178, 0.298819255222525, 0.2761126248864669, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Semialdhyde_dh.gap.json b/pfam_gap_rates/Semialdhyde_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a87d695d2558bd1c16d68c98616941a5e81e67a8
--- /dev/null
+++ b/pfam_gap_rates/Semialdhyde_dh.gap.json
@@ -0,0 +1 @@
+{"family": "Semialdhyde_dh", "n_seqs": 4265, "length": 158, "gap_rates": [0.34841735052754985, 0.105978898007034, 0.08792497069167643, 0.08604923798358734, 0.08417350527549824, 0.08159437280187573, 0.15052754982415006, 0.0813599062133646, 0.08112543962485345, 0.07409144196951935, 0.0738569753810082, 0.07291910902696366, 0.07268464243845252, 0.07198124267291911, 0.07080890973036343, 0.07033997655334115, 0.06869871043376319, 0.06822977725674091, 0.06799531066822978, 0.0675263774912075, 0.0668229777256741, 0.9383352872215709, 0.6201641266119577, 0.06705744431418523, 0.06705744431418523, 0.06611957796014067, 0.06588511137162954, 0.06565064478311841, 0.06541617819460727, 0.06541617819460727, 0.06541617819460727, 0.0668229777256741, 0.06565064478311841, 0.06447831184056271, 0.06471277842907386, 0.06494724501758499, 0.06611957796014067, 0.9228604923798359, 0.4686987104337632, 0.0776084407971864, 0.07010550996483002, 0.06588511137162954, 0.06635404454865182, 0.06611957796014067, 0.06565064478311841, 0.06635404454865182, 0.06776084407971864, 0.34349355216881594, 0.36060961313012896, 0.8321219226260258, 0.8825322391559203, 0.8890973036342321, 0.94021101992966, 0.9388042203985932, 0.883704572098476, 0.8776084407971864, 0.8152403282532239, 0.48815943728018757, 0.4712778429073857, 0.4473622508792497, 0.418757327080891, 0.13622508792497068, 0.09261430246189918, 0.06447831184056271, 0.061664712778429075, 0.05650644783118405, 0.05674091441969519, 0.05885111371629543, 0.05720984759671747, 0.7920281359906214, 0.16553341148886283, 0.11441969519343494, 0.07362250879249707, 0.02719812426729191, 0.024384525205158266, 0.016647127784290738, 0.777725674091442, 0.023212192262602578, 0.01242672919109027, 0.007737397420867527, 0.007737397420867527, 0.007971864009378663, 0.007737397420867527, 0.007971864009378663, 0.006330597889800703, 0.007033997655334115, 0.9460726846424384, 0.9458382180539273, 0.017819460726846426, 0.007737397420867527, 0.007737397420867527, 0.008440797186400938, 0.009613130128956624, 0.010550996483001172, 0.01078546307151231, 0.011019929660023447, 0.012895662368112544, 0.013130128956623681, 0.014536928487690504, 0.015005861664712778, 0.015005861664712778, 0.9301289566236811, 0.0921453692848769, 0.022508792497069167, 0.020867526377491206, 0.021805392731535755, 0.017584994138335287, 0.9057444314185229, 0.8980070339976554, 0.01922626025791325, 0.017819460726846426, 0.017819460726846426, 0.017819460726846426, 0.020164126611957794, 0.020164126611957794, 0.02157092614302462, 0.023446658851113716, 0.02579132473622509, 0.08440797186400938, 0.08862837045720985, 0.08980070339976554, 0.09026963657678781, 0.6839390386869871, 0.6984759671746776, 0.7017584994138335, 0.7099648300117233, 0.7106682297772567, 0.7109026963657679, 0.7116060961313013, 0.7631887456037515, 0.7737397420867527, 0.7981242672919109, 0.7643610785463072, 0.758968347010551, 0.711137162954279, 0.7106682297772567, 0.7104337631887456, 0.7019929660023446, 0.7001172332942556, 0.6898007033997655, 0.6811254396248535, 0.0347010550996483, 0.03235638921453693, 0.03212192262602579, 0.03305978898007034, 0.03446658851113716, 0.03446658851113716, 0.034935521688159436, 0.03563892145369285, 0.038686987104337635, 0.05744431418522861, 0.08229777256740914, 0.10785463071512309, 0.13669402110199297, 0.20234466588511138, 0.31817116060961315, 0.5943728018757327, 0.8670574443141852], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Senescence_reg.gap.json b/pfam_gap_rates/Senescence_reg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06e5e5cf419335895afc81f63570e72ee561f7dc
--- /dev/null
+++ b/pfam_gap_rates/Senescence_reg.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/SerH.gap.json b/pfam_gap_rates/SerH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f3dd6c92f2b60cb408ab36dde9817858f0c677a
--- /dev/null
+++ b/pfam_gap_rates/SerH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Serum_albumin.gap.json b/pfam_gap_rates/Serum_albumin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b2dd662607b923e68dd33a0baf54a227e76db84
--- /dev/null
+++ b/pfam_gap_rates/Serum_albumin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SgrR_N.gap.json b/pfam_gap_rates/SgrR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4c39c0db91df628f3d1f2d00fd727f332439cef
--- /dev/null
+++ b/pfam_gap_rates/SgrR_N.gap.json
@@ -0,0 +1 @@
+{"family": "SgrR_N", "n_seqs": 132, "length": 120, "gap_rates": [0.7196969696969697, 0.5757575757575758, 0.4772727272727273, 0.3939393939393939, 0.3560606060606061, 0.3181818181818182, 0.3106060606060606, 0.26515151515151514, 0.22727272727272727, 0.20454545454545456, 0.20454545454545456, 0.18181818181818182, 0.18181818181818182, 0.14393939393939395, 0.7424242424242424, 0.7954545454545454, 0.7727272727272727, 0.6818181818181818, 0.09090909090909091, 0.11363636363636363, 0.12878787878787878, 0.09848484848484848, 0.05303030303030303, 0.045454545454545456, 0.030303030303030304, 0.022727272727272728, 0.015151515151515152, 0.015151515151515152, 0.022727272727272728, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.015151515151515152, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.030303030303030304, 0.030303030303030304, 0.045454545454545456, 0.05303030303030303, 0.07575757575757576, 0.12121212121212122, 0.12121212121212122, 0.13636363636363635, 0.8560606060606061, 0.3712121212121212, 0.3560606060606061, 0.3787878787878788, 0.4166666666666667, 0.45454545454545453, 0.4696969696969697, 0.48484848484848486, 0.49242424242424243, 0.5303030303030303, 0.5303030303030303, 0.5378787878787878, 0.5606060606060606, 0.5606060606060606, 0.5681818181818182, 0.5833333333333334, 0.6439393939393939, 0.6439393939393939, 0.6666666666666666, 0.6893939393939394, 0.7272727272727273, 0.8560606060606061], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Shisa.gap.json b/pfam_gap_rates/Shisa.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e15f187a8c62dbfa44bad3831c6b8842ac7f324e
--- /dev/null
+++ b/pfam_gap_rates/Shisa.gap.json
@@ -0,0 +1 @@
+{"family": "Shisa", "n_seqs": 171, "length": 216, "gap_rates": [0.7251461988304093, 0.3742690058479532, 0.34502923976608185, 0.2573099415204678, 0.2573099415204678, 0.25146198830409355, 0.2573099415204678, 0.2631578947368421, 0.29239766081871343, 0.2807017543859649, 0.24561403508771928, 0.21052631578947367, 0.2046783625730994, 0.21052631578947367, 0.21052631578947367, 0.2046783625730994, 0.2046783625730994, 0.2046783625730994, 0.2046783625730994, 0.19883040935672514, 0.19883040935672514, 0.7192982456140351, 0.6900584795321637, 0.6257309941520468, 0.6257309941520468, 0.36257309941520466, 0.36257309941520466, 0.2631578947368421, 0.2573099415204678, 0.19298245614035087, 0.1871345029239766, 0.1871345029239766, 0.1871345029239766, 0.1871345029239766, 0.1871345029239766, 0.1871345029239766, 0.1871345029239766, 0.1871345029239766, 0.19883040935672514, 0.19298245614035087, 0.1871345029239766, 0.1871345029239766, 0.19298245614035087, 0.1871345029239766, 0.18128654970760233, 0.21052631578947367, 0.26900584795321636, 0.27485380116959063, 0.2807017543859649, 0.28654970760233917, 0.8304093567251462, 0.8771929824561403, 0.8187134502923976, 0.2807017543859649, 0.27485380116959063, 0.27485380116959063, 0.26900584795321636, 0.26900584795321636, 0.4152046783625731, 0.4327485380116959, 0.3742690058479532, 0.38011695906432746, 0.4678362573099415, 0.4678362573099415, 0.42105263157894735, 0.39766081871345027, 0.391812865497076, 0.39766081871345027, 0.4269005847953216, 0.45614035087719296, 0.5789473684210527, 0.47368421052631576, 0.4678362573099415, 0.4444444444444444, 0.43859649122807015, 0.52046783625731, 0.4444444444444444, 0.4678362573099415, 0.45614035087719296, 0.49122807017543857, 0.6432748538011696, 0.5789473684210527, 0.42105263157894735, 0.40350877192982454, 0.935672514619883, 0.8421052631578947, 0.631578947368421, 0.5906432748538012, 0.9181286549707602, 0.9298245614035088, 0.9415204678362573, 0.9473684210526315, 0.935672514619883, 0.9181286549707602, 0.9122807017543859, 0.5263157894736842, 0.49122807017543857, 0.4619883040935672, 0.4502923976608187, 0.4502923976608187, 0.4502923976608187, 0.4502923976608187, 0.43859649122807015, 0.17543859649122806, 0.17543859649122806, 0.1695906432748538, 0.1695906432748538, 0.1695906432748538, 0.1695906432748538, 0.17543859649122806, 0.17543859649122806, 0.17543859649122806, 0.18128654970760233, 0.21052631578947367, 0.21052631578947367, 0.17543859649122806, 0.1695906432748538, 0.1695906432748538, 0.18128654970760233, 0.1871345029239766, 0.18128654970760233, 0.1871345029239766, 0.19298245614035087, 0.1871345029239766, 0.19298245614035087, 0.19298245614035087, 0.19298245614035087, 0.1871345029239766, 0.1871345029239766, 0.19298245614035087, 0.19298245614035087, 0.19298245614035087, 0.2222222222222222, 0.7251461988304093, 0.8128654970760234, 0.7017543859649122, 0.5029239766081871, 0.3508771929824561, 0.3216374269005848, 0.3216374269005848, 0.3333333333333333, 0.32748538011695905, 0.3333333333333333, 0.34502923976608185, 0.36257309941520466, 0.3508771929824561, 0.3567251461988304, 0.3684210526315789, 0.3742690058479532, 0.7660818713450293, 0.8888888888888888, 0.8362573099415205, 0.7134502923976608, 0.3684210526315789, 0.3684210526315789, 0.38596491228070173, 0.38596491228070173, 0.39766081871345027, 0.6900584795321637, 0.8070175438596491, 0.7719298245614035, 0.4853801169590643, 0.4152046783625731, 0.36257309941520466, 0.3567251461988304, 0.3508771929824561, 0.3508771929824561, 0.3684210526315789, 0.36257309941520466, 0.36257309941520466, 0.3567251461988304, 0.3508771929824561, 0.3508771929824561, 0.49707602339181284, 0.4678362573099415, 0.34502923976608185, 0.3508771929824561, 0.34502923976608185, 0.3508771929824561, 0.3567251461988304, 0.38011695906432746, 0.38011695906432746, 0.38011695906432746, 0.391812865497076, 0.40350877192982454, 0.4327485380116959, 0.4502923976608187, 0.47368421052631576, 0.4853801169590643, 0.8538011695906432, 0.9239766081871345, 0.8245614035087719, 0.5789473684210527, 0.6081871345029239, 0.6140350877192983, 0.6023391812865497, 0.6023391812865497, 0.6140350877192983, 0.6198830409356725, 0.6198830409356725, 0.6783625730994152, 0.8888888888888888, 0.847953216374269, 0.695906432748538, 0.7251461988304093, 0.7134502923976608, 0.7251461988304093, 0.7251461988304093, 0.7719298245614035, 0.8011695906432749, 0.8070175438596491, 0.8187134502923976, 0.8304093567251462, 0.9005847953216374, 0.9005847953216374, 0.9122807017543859], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma70_r2.gap.json b/pfam_gap_rates/Sigma70_r2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f60ec126b2576d1ac8e8a2c8d6186882061f8a3
--- /dev/null
+++ b/pfam_gap_rates/Sigma70_r2.gap.json
@@ -0,0 +1 @@
+{"family": "Sigma70_r2", "n_seqs": 5000, "length": 72, "gap_rates": [0.4576, 0.2678, 0.1942, 0.1424, 0.1062, 0.0772, 0.0604, 0.0458, 0.035, 0.0288, 0.0238, 0.0202, 0.0178, 0.0156, 0.0168, 0.0114, 0.9436, 0.9186, 0.0102, 0.0094, 0.0112, 0.013, 0.0274, 0.0054, 0.0034, 0.003, 0.003, 0.003, 0.002, 0.0018, 0.0016, 0.0016, 0.0012, 0.0012, 0.0012, 0.0138, 0.0012, 0.0206, 0.0094, 0.0142, 0.0088, 0.0936, 0.0808, 0.027, 0.3686, 0.0724, 0.011, 0.0318, 0.4606, 0.0906, 0.0096, 0.0048, 0.0046, 0.0046, 0.0052, 0.0058, 0.0064, 0.0068, 0.0074, 0.0082, 0.0096, 0.0102, 0.013, 0.0172, 0.0204, 0.0248, 0.0338, 0.0506, 0.0676, 0.1356, 0.22, 0.4966], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma70_r4_2.gap.json b/pfam_gap_rates/Sigma70_r4_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03f2a642c0179951b6a4fbc16d9fdf8addb81ff7
--- /dev/null
+++ b/pfam_gap_rates/Sigma70_r4_2.gap.json
@@ -0,0 +1 @@
+{"family": "Sigma70_r4_2", "n_seqs": 5000, "length": 54, "gap_rates": [0.9458, 0.6786, 0.3324, 0.1644, 0.1258, 0.0956, 0.0716, 0.053, 0.0412, 0.0296, 0.022, 0.0198, 0.0176, 0.0174, 0.0156, 0.0138, 0.0108, 0.0096, 0.0038, 0.0028, 0.0016, 0.0452, 0.0098, 0.0016, 0.0002, 0.0002, 0.0002, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0004, 0.0008, 0.0012, 0.0012, 0.0028, 0.0108, 0.0128, 0.0152, 0.0164, 0.0196, 0.0228, 0.028, 0.0328, 0.0518, 0.0866, 0.175, 0.327], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spc7.gap.json b/pfam_gap_rates/Spc7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7ccf9c2ce1fb42b34eeec30086946a721fd3c6a
--- /dev/null
+++ b/pfam_gap_rates/Spc7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SpoU_methylase.gap.json b/pfam_gap_rates/SpoU_methylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3f97b8818d6c2b6416ee01386e3653b5b229c7e
--- /dev/null
+++ b/pfam_gap_rates/SpoU_methylase.gap.json
@@ -0,0 +1 @@
+{"family": "SpoU_methylase", "n_seqs": 5000, "length": 166, "gap_rates": [0.3802, 0.1294, 0.0612, 0.05, 0.0446, 0.041, 0.039, 0.0378, 0.0362, 0.0346, 0.0332, 0.032, 0.0318, 0.0304, 0.03, 0.03, 0.0292, 0.028, 0.0278, 0.0276, 0.0272, 0.0272, 0.027, 0.0262, 0.0256, 0.0256, 0.217, 0.0254, 0.0246, 0.0236, 0.0236, 0.1142, 0.0358, 0.2642, 0.0402, 0.0312, 0.1004, 0.3836, 0.1132, 0.0684, 0.0366, 0.0476, 0.0552, 0.0544, 0.0376, 0.0256, 0.0238, 0.0238, 0.0208, 0.02, 0.0202, 0.0208, 0.0208, 0.0198, 0.0208, 0.0206, 0.9036, 0.0838, 0.0592, 0.0272, 0.026, 0.0336, 0.0264, 0.0266, 0.0272, 0.0274, 0.0424, 0.0306, 0.0288, 0.0282, 0.0302, 0.029, 0.0354, 0.0402, 0.2888, 0.1608, 0.0862, 0.0656, 0.0254, 0.0242, 0.0238, 0.034, 0.0308, 0.797, 0.4298, 0.0272, 0.0266, 0.0244, 0.0254, 0.0242, 0.0232, 0.837, 0.9422, 0.916, 0.7332, 0.0262, 0.0458, 0.9016, 0.9338, 0.946, 0.9232, 0.8822, 0.0604, 0.0872, 0.022, 0.8086, 0.8728, 0.8954, 0.9172, 0.9424, 0.9294, 0.9048, 0.8874, 0.8468, 0.7616, 0.0214, 0.023, 0.021, 0.0212, 0.0206, 0.0206, 0.0202, 0.0216, 0.0216, 0.0218, 0.0242, 0.0222, 0.022, 0.0224, 0.0224, 0.0226, 0.025, 0.0236, 0.023, 0.0236, 0.0246, 0.0256, 0.0252, 0.9466, 0.8716, 0.0402, 0.0344, 0.025, 0.0252, 0.0252, 0.0256, 0.026, 0.9456, 0.0502, 0.048, 0.0466, 0.0388, 0.0368, 0.037, 0.0374, 0.0378, 0.0382, 0.0382, 0.0388, 0.0398, 0.04, 0.0406, 0.0424, 0.0434, 0.0578, 0.2706], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoVAB.gap.json b/pfam_gap_rates/SpoVAB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42daaa586454ccfd0f00d26171df09077057c9c8
--- /dev/null
+++ b/pfam_gap_rates/SpoVAB.gap.json
@@ -0,0 +1 @@
+{"family": "SpoVAB", "n_seqs": 167, "length": 124, "gap_rates": [0.11976047904191617, 0.023952095808383235, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.023952095808383235, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.9281437125748503, 0.9401197604790419, 0.9401197604790419, 0.9461077844311377, 0.9461077844311377, 0.9401197604790419, 0.9401197604790419, 0.9341317365269461, 0.9041916167664671, 0.011976047904191617, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.029940119760479042, 0.023952095808383235, 0.011976047904191617, 0.844311377245509, 0.8862275449101796, 0.9461077844311377, 0.9341317365269461, 0.844311377245509, 0.7904191616766467, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.011976047904191617, 0.029940119760479042, 0.20359281437125748], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoVAD.gap.json b/pfam_gap_rates/SpoVAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..793c0318c6093302750750f22caf2631c8f1f3d2
--- /dev/null
+++ b/pfam_gap_rates/SpoVAD.gap.json
@@ -0,0 +1 @@
+{"family": "SpoVAD", "n_seqs": 449, "length": 337, "gap_rates": [0.2739420935412027, 0.22048997772828507, 0.18930957683741648, 0.17371937639198218, 0.155902004454343, 0.1447661469933185, 0.1358574610244989, 0.14253897550111358, 0.10690423162583519, 0.08240534521158129, 0.0757238307349666, 0.0757238307349666, 0.07349665924276169, 0.07349665924276169, 0.07349665924276169, 0.07349665924276169, 0.07349665924276169, 0.07349665924276169, 0.07349665924276169, 0.07349665924276169, 0.07349665924276169, 0.07349665924276169, 0.07349665924276169, 0.07126948775055679, 0.06904231625835189, 0.06904231625835189, 0.07126948775055679, 0.07126948775055679, 0.06904231625835189, 0.06904231625835189, 0.0757238307349666, 0.07349665924276169, 0.06904231625835189, 0.066815144766147, 0.066815144766147, 0.066815144766147, 0.066815144766147, 0.066815144766147, 0.066815144766147, 0.066815144766147, 0.066815144766147, 0.066815144766147, 0.066815144766147, 0.066815144766147, 0.062360801781737196, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_YhcN_YlaJ.gap.json b/pfam_gap_rates/Spore_YhcN_YlaJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f39dfa0f33e162a9dbf752baa4c87795042010e7
--- /dev/null
+++ b/pfam_gap_rates/Spore_YhcN_YlaJ.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SusE.gap.json b/pfam_gap_rates/SusE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e2c33506b99581895631931c21443188e8e1dc4
--- /dev/null
+++ b/pfam_gap_rates/SusE.gap.json
@@ -0,0 +1 @@
+{"family": "SusE", "n_seqs": 156, "length": 144, "gap_rates": [0.7692307692307693, 0.2692307692307692, 0.10897435897435898, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08974358974358974, 0.08333333333333333, 0.07692307692307693, 0.07692307692307693, 0.08333333333333333, 0.07051282051282051, 0.07051282051282051, 0.08974358974358974, 0.12179487179487179, 0.7884615384615384, 0.9230769230769231, 0.5641025641025641, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.03205128205128205, 0.02564102564102564, 0.038461538461538464, 0.05128205128205128, 0.02564102564102564, 0.782051282051282, 0.5897435897435898, 0.07051282051282051, 0.038461538461538464, 0.02564102564102564, 0.01282051282051282, 0.01282051282051282, 0.019230769230769232, 0.02564102564102564, 0.3076923076923077, 0.25, 0.038461538461538464, 0.00641025641025641, 0.01282051282051282, 0.019230769230769232, 0.00641025641025641, 0.01282051282051282, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.01282051282051282, 0.8269230769230769, 0.03205128205128205, 0.02564102564102564, 0.9166666666666666, 0.03205128205128205, 0.02564102564102564, 0.04487179487179487, 0.04487179487179487, 0.9423076923076923, 0.9358974358974359, 0.03205128205128205, 0.038461538461538464, 0.03205128205128205, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.4423076923076923, 0.9423076923076923, 0.057692307692307696, 0.05128205128205128, 0.038461538461538464, 0.02564102564102564, 0.02564102564102564, 0.038461538461538464, 0.7051282051282052, 0.8012820512820513, 0.9230769230769231, 0.9423076923076923, 0.9487179487179487, 0.9358974358974359, 0.8846153846153846, 0.7628205128205128, 0.4551282051282051, 0.05128205128205128, 0.057692307692307696, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.9294871794871795, 0.0641025641025641, 0.07051282051282051, 0.04487179487179487, 0.038461538461538464, 0.04487179487179487, 0.038461538461538464, 0.04487179487179487, 0.04487179487179487, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.057692307692307696, 0.0641025641025641, 0.0641025641025641, 0.0641025641025641, 0.0641025641025641, 0.07051282051282051, 0.7628205128205128, 0.10256410256410256, 0.08974358974358974, 0.08974358974358974, 0.09615384615384616, 0.09615384615384616, 0.10256410256410256, 0.12179487179487179, 0.14102564102564102, 0.8910256410256411, 0.8910256410256411, 0.9294871794871795, 0.9487179487179487, 0.9102564102564102, 0.8910256410256411, 0.8910256410256411, 0.16666666666666666, 0.17307692307692307, 0.17307692307692307, 0.1858974358974359, 0.20512820512820512, 0.21794871794871795, 0.2564102564102564, 0.6474358974358975], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SynMuv_product.gap.json b/pfam_gap_rates/SynMuv_product.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd30ec511a6e0a761af6dd9248cf24cf7072ef50
--- /dev/null
+++ b/pfam_gap_rates/SynMuv_product.gap.json
@@ -0,0 +1 @@
+{"family": "SynMuv_product", "n_seqs": 235, "length": 102, "gap_rates": [0.4553191489361702, 0.12340425531914893, 0.10638297872340426, 0.10212765957446808, 0.08936170212765958, 0.08936170212765958, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07234042553191489, 0.06808510638297872, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.03829787234042553, 0.03829787234042553, 0.9361702127659575, 0.9361702127659575, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.03404255319148936, 0.029787234042553193, 0.029787234042553193, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01702127659574468, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01702127659574468, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02553191489361702, 0.02553191489361702, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.05531914893617021, 0.05531914893617021, 0.05531914893617021, 0.05531914893617021, 0.05531914893617021, 0.06382978723404255, 0.18723404255319148], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T2SSF.gap.json b/pfam_gap_rates/T2SSF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f27d2b80f4a6060cdbc2a35b14044736c2b17354
--- /dev/null
+++ b/pfam_gap_rates/T2SSF.gap.json
@@ -0,0 +1 @@
+{"family": "T2SSF", "n_seqs": 5000, "length": 131, "gap_rates": [0.5076, 0.1918, 0.1082, 0.0678, 0.044, 0.0376, 0.0334, 0.0272, 0.0238, 0.0204, 0.0198, 0.0178, 0.0186, 0.0166, 0.0152, 0.015, 0.0146, 0.0138, 0.0136, 0.0134, 0.0134, 0.0134, 0.013, 0.0168, 0.0144, 0.0146, 0.2678, 0.9272, 0.9064, 0.0308, 0.0178, 0.0148, 0.0126, 0.0112, 0.0106, 0.0094, 0.0116, 0.01, 0.0084, 0.0072, 0.0066, 0.0064, 0.0062, 0.0058, 0.0058, 0.0062, 0.0056, 0.0072, 0.0102, 0.007, 0.0068, 0.0064, 0.0056, 0.0058, 0.0058, 0.7366, 0.755, 0.7426, 0.721, 0.01, 0.031, 0.0752, 0.394, 0.684, 0.0102, 0.0066, 0.0064, 0.006, 0.0054, 0.0054, 0.0056, 0.0052, 0.0048, 0.0048, 0.0074, 0.0048, 0.0046, 0.0048, 0.0048, 0.0052, 0.0072, 0.0054, 0.0054, 0.005, 0.0052, 0.0054, 0.0054, 0.0052, 0.0054, 0.0056, 0.0056, 0.0058, 0.0058, 0.0058, 0.0058, 0.006, 0.0062, 0.0062, 0.0068, 0.007, 0.0072, 0.0072, 0.0076, 0.0074, 0.008, 0.008, 0.0082, 0.0086, 0.0088, 0.0102, 0.0106, 0.0106, 0.0106, 0.0108, 0.0108, 0.0118, 0.0118, 0.0118, 0.012, 0.0122, 0.0126, 0.0142, 0.0156, 0.0186, 0.0238, 0.0324, 0.044, 0.0646, 0.1078, 0.2326, 0.3758], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T6SS_TssG.gap.json b/pfam_gap_rates/T6SS_TssG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9971534d232576d0da2b35d0ca3c04158c71878f
--- /dev/null
+++ b/pfam_gap_rates/T6SS_TssG.gap.json
@@ -0,0 +1 @@
+{"family": "T6SS_TssG", "n_seqs": 289, "length": 355, "gap_rates": [0.754325259515571, 0.44982698961937717, 0.3044982698961938, 0.25259515570934254, 0.20069204152249134, 0.18339100346020762, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17301038062283736, 0.1695501730103806, 0.1695501730103806, 0.1695501730103806, 0.6885813148788927, 0.9307958477508651, 0.9065743944636678, 0.6193771626297578, 0.2698961937716263, 0.3044982698961938, 0.2837370242214533, 0.29411764705882354, 0.2768166089965398, 0.22837370242214533, 0.7612456747404844, 0.6332179930795848, 0.1903114186851211, 0.18685121107266436, 0.1695501730103806, 0.1695501730103806, 0.16608996539792387, 0.1695501730103806, 0.21107266435986158, 0.19377162629757785, 0.1972318339100346, 0.9065743944636678, 0.15916955017301038, 0.1314878892733564, 0.12110726643598616, 0.11072664359861592, 0.11072664359861592, 0.10380622837370242, 0.10380622837370242, 0.10380622837370242, 0.10380622837370242, 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\ No newline at end of file
diff --git a/pfam_gap_rates/T6SS_VipA.gap.json b/pfam_gap_rates/T6SS_VipA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ce98ccb97651e7b410ba0e213c52abdebea8844
--- /dev/null
+++ b/pfam_gap_rates/T6SS_VipA.gap.json
@@ -0,0 +1 @@
+{"family": "T6SS_VipA", "n_seqs": 318, "length": 160, "gap_rates": [0.24842767295597484, 0.16352201257861634, 0.14150943396226415, 0.13836477987421383, 0.13522012578616352, 0.1289308176100629, 0.12578616352201258, 0.12578616352201258, 0.11949685534591195, 0.11320754716981132, 0.11006289308176101, 0.11006289308176101, 0.1069182389937107, 0.12578616352201258, 0.1069182389937107, 0.10377358490566038, 0.09748427672955975, 0.09748427672955975, 0.09748427672955975, 0.09748427672955975, 0.09119496855345911, 0.07861635220125786, 0.07547169811320754, 0.06918238993710692, 0.06289308176100629, 0.059748427672955975, 0.0440251572327044, 0.03773584905660377, 0.03773584905660377, 0.03459119496855346, 0.03459119496855346, 0.03459119496855346, 0.03459119496855346, 0.03459119496855346, 0.03459119496855346, 0.03459119496855346, 0.03459119496855346, 0.03459119496855346, 0.9308176100628931, 0.39308176100628933, 0.3490566037735849, 0.949685534591195, 0.9465408805031447, 0.06289308176100629, 0.040880503144654086, 0.03459119496855346, 0.03459119496855346, 0.03459119496855346, 0.03459119496855346, 0.03773584905660377, 0.0440251572327044, 0.0440251572327044, 0.03773584905660377, 0.031446540880503145, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.018867924528301886, 0.02830188679245283, 0.015723270440251572, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.015723270440251572, 0.018867924528301886, 0.018867924528301886, 0.040880503144654086, 0.04716981132075472, 0.06289308176100629, 0.06918238993710692, 0.07232704402515723, 0.06289308176100629, 0.04716981132075472, 0.04716981132075472, 0.8773584905660378, 0.949685534591195, 0.9308176100628931, 0.720125786163522, 0.03773584905660377, 0.04716981132075472, 0.3333333333333333, 0.05345911949685535, 0.03773584905660377, 0.03773584905660377, 0.0220125786163522, 0.018867924528301886, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.015723270440251572, 0.0220125786163522, 0.040880503144654086, 0.07547169811320754, 0.07861635220125786, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08490566037735849, 0.08490566037735849, 0.09119496855345911, 0.0880503144654088, 0.0880503144654088, 0.0880503144654088, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.10377358490566038, 0.1069182389937107, 0.1069182389937107, 0.11006289308176101, 0.11949685534591195, 0.12264150943396226, 0.1289308176100629, 0.1289308176100629, 0.13522012578616352, 0.14150943396226415, 0.14779874213836477, 0.14779874213836477, 0.1540880503144654, 0.16037735849056603, 0.16666666666666666, 0.18553459119496854, 0.2610062893081761, 0.5031446540880503], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TAFII55_N.gap.json b/pfam_gap_rates/TAFII55_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e05a0bf2d44dc0925bd9fb61cac34ceb64c8b727
--- /dev/null
+++ b/pfam_gap_rates/TAFII55_N.gap.json
@@ -0,0 +1 @@
+{"family": "TAFII55_N", "n_seqs": 372, "length": 200, "gap_rates": [0.31451612903225806, 0.20161290322580644, 0.17204301075268819, 0.1639784946236559, 0.1532258064516129, 0.1532258064516129, 0.1532258064516129, 0.1532258064516129, 0.1532258064516129, 0.1532258064516129, 0.1532258064516129, 0.9489247311827957, 0.6451612903225806, 0.16129032258064516, 0.1586021505376344, 0.15591397849462366, 0.1586021505376344, 0.15053763440860216, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.15053763440860216, 0.1478494623655914, 0.1478494623655914, 0.14516129032258066, 0.1424731182795699, 0.14516129032258066, 0.25268817204301075, 0.4274193548387097, 0.7150537634408602, 0.8010752688172043, 0.8279569892473119, 0.8064516129032258, 0.7634408602150538, 0.5510752688172043, 0.1532258064516129, 0.13709677419354838, 0.12365591397849462, 0.12096774193548387, 0.11021505376344086, 0.11021505376344086, 0.10752688172043011, 0.11290322580645161, 0.7849462365591398, 0.3467741935483871, 0.10215053763440861, 0.10483870967741936, 0.0967741935483871, 0.0913978494623656, 0.08870967741935484, 0.08602150537634409, 0.07795698924731183, 0.07526881720430108, 0.07526881720430108, 0.07526881720430108, 0.07258064516129033, 0.06989247311827956, 0.056451612903225805, 0.051075268817204304, 0.051075268817204304, 0.051075268817204304, 0.051075268817204304, 0.04838709677419355, 0.051075268817204304, 0.04838709677419355, 0.051075268817204304, 0.04838709677419355, 0.04838709677419355, 0.0456989247311828, 0.0456989247311828, 0.04838709677419355, 0.04838709677419355, 0.043010752688172046, 0.043010752688172046, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.0456989247311828, 0.04838709677419355, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.04032258064516129, 0.043010752688172046, 0.043010752688172046, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.7876344086021505, 0.8172043010752689, 0.7903225806451613, 0.7849462365591398, 0.07795698924731183, 0.08870967741935484, 0.08064516129032258, 0.08602150537634409, 0.07526881720430108, 0.06720430107526881, 0.30913978494623656, 0.27419354838709675, 0.25806451612903225, 0.2553763440860215, 0.2903225806451613, 0.5349462365591398, 0.8198924731182796, 0.7741935483870968, 0.7688172043010753, 0.75, 0.7096774193548387, 0.8252688172043011, 0.8306451612903226, 0.8978494623655914, 0.9032258064516129, 0.9220430107526881, 0.9301075268817204, 0.9327956989247311, 0.9381720430107527, 0.946236559139785, 0.946236559139785, 0.9408602150537635, 0.9354838709677419, 0.9327956989247311, 0.9274193548387096, 0.9166666666666666, 0.9005376344086021, 0.8548387096774194, 0.8252688172043011, 0.8225806451612904, 0.6290322580645161, 0.5779569892473119, 0.521505376344086, 0.3387096774193548, 0.3333333333333333, 0.40591397849462363, 0.8629032258064516, 0.5456989247311828, 0.4435483870967742, 0.07795698924731183, 0.07258064516129033, 0.07258064516129033, 0.06720430107526881, 0.06720430107526881, 0.06720430107526881, 0.06989247311827956, 0.06720430107526881, 0.06451612903225806, 0.06720430107526881, 0.06451612903225806, 0.06182795698924731, 0.06451612903225806, 0.06182795698924731, 0.05913978494623656, 0.05913978494623656, 0.05913978494623656, 0.06182795698924731, 0.10215053763440861, 0.06989247311827956, 0.07258064516129033, 0.06989247311827956, 0.06989247311827956, 0.06989247311827956, 0.9381720430107527, 0.07526881720430108, 0.07258064516129033, 0.8790322580645161, 0.8790322580645161, 0.08333333333333333, 0.08870967741935484, 0.0913978494623656, 0.9435483870967742, 0.9354838709677419, 0.0967741935483871, 0.09946236559139784, 0.09946236559139784, 0.09946236559139784, 0.09946236559139784, 0.6935483870967742, 0.6801075268817204, 0.10483870967741936, 0.10483870967741936, 0.11021505376344086, 0.11559139784946236, 0.13172043010752688, 0.1693548387096774, 0.1935483870967742, 0.22311827956989247, 0.25806451612903225, 0.3010752688172043, 0.3225806451612903, 0.3279569892473118, 0.3333333333333333, 0.3387096774193548, 0.3817204301075269, 0.7634408602150538], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TAP42.gap.json b/pfam_gap_rates/TAP42.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4edfccd20765f981edce01093e3a20e6a254bb79
--- /dev/null
+++ b/pfam_gap_rates/TAP42.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TF_Zn_Ribbon.gap.json b/pfam_gap_rates/TF_Zn_Ribbon.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29ea25b0d71ffda6c5112014e15d12119d2aa88b
--- /dev/null
+++ b/pfam_gap_rates/TF_Zn_Ribbon.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TGFb_propeptide.gap.json b/pfam_gap_rates/TGFb_propeptide.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9ce3cda1dde92b11bfe5ed762317b964e0da858
--- /dev/null
+++ b/pfam_gap_rates/TGFb_propeptide.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TH1.gap.json b/pfam_gap_rates/TH1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d62a99b7c9bf15a791e8be6f51ca4c718d8ff8d
--- /dev/null
+++ b/pfam_gap_rates/TH1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TIM21.gap.json b/pfam_gap_rates/TIM21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b7dafe272dd9c3330a8d4302bdd8a047a625097
--- /dev/null
+++ b/pfam_gap_rates/TIM21.gap.json
@@ -0,0 +1 @@
+{"family": "TIM21", "n_seqs": 268, "length": 155, "gap_rates": [0.41044776119402987, 0.3358208955223881, 0.31343283582089554, 0.30223880597014924, 0.2835820895522388, 0.24253731343283583, 0.19029850746268656, 0.15298507462686567, 0.13805970149253732, 0.13432835820895522, 0.13059701492537312, 0.13059701492537312, 0.11940298507462686, 0.11567164179104478, 0.1044776119402985, 0.1044776119402985, 0.09328358208955224, 0.08208955223880597, 0.07835820895522388, 0.08208955223880597, 0.07462686567164178, 0.06343283582089553, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.055970149253731345, 0.055970149253731345, 0.055970149253731345, 0.055970149253731345, 0.06343283582089553, 0.06343283582089553, 0.05970149253731343, 0.055970149253731345, 0.04477611940298507, 0.041044776119402986, 0.041044776119402986, 0.03731343283582089, 0.033582089552238806, 0.03731343283582089, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.026119402985074626, 0.026119402985074626, 0.026119402985074626, 0.026119402985074626, 0.026119402985074626, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.7052238805970149, 0.8917910447761194, 0.9402985074626866, 0.8917910447761194, 0.7014925373134329, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.033582089552238806, 0.03731343283582089, 0.03731343283582089, 0.04477611940298507, 0.041044776119402986, 0.033582089552238806, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.503731343283582, 0.08208955223880597, 0.055970149253731345, 0.5447761194029851, 0.4216417910447761, 0.3283582089552239, 0.35074626865671643, 0.1044776119402985, 0.11194029850746269, 0.06343283582089553, 0.06716417910447761, 0.05970149253731343, 0.05223880597014925, 0.055970149253731345, 0.055970149253731345, 0.05223880597014925, 0.9477611940298507, 0.05223880597014925, 0.05223880597014925, 0.055970149253731345, 0.055970149253731345, 0.055970149253731345, 0.048507462686567165, 0.048507462686567165, 0.048507462686567165, 0.048507462686567165, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.048507462686567165, 0.9328358208955224, 0.8917910447761194, 0.0708955223880597, 0.10074626865671642, 0.11194029850746269, 0.12686567164179105, 0.13432835820895522, 0.13432835820895522, 0.1455223880597015, 0.1455223880597015, 0.15671641791044777, 0.15671641791044777, 0.16044776119402984, 0.16791044776119404, 0.16791044776119404, 0.1791044776119403, 0.1828358208955224, 0.3208955223880597, 0.4291044776119403, 0.22014925373134328, 0.20149253731343283, 0.20149253731343283, 0.20149253731343283, 0.20149253731343283, 0.20522388059701493, 0.208955223880597, 0.2126865671641791, 0.22014925373134328, 0.8507462686567164, 0.8171641791044776, 0.22014925373134328, 0.21641791044776118, 0.22014925373134328, 0.24253731343283583, 0.2835820895522388, 0.33955223880597013, 0.3619402985074627, 0.373134328358209, 0.3917910447761194, 0.39552238805970147, 0.39925373134328357, 0.4141791044776119, 0.4626865671641791, 0.6119402985074627, 0.7574626865671642], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TIP41.gap.json b/pfam_gap_rates/TIP41.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc759992afb08fac47d05ba389148a97b1948102
--- /dev/null
+++ b/pfam_gap_rates/TIP41.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TK.gap.json b/pfam_gap_rates/TK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f21e8b2c6c2cea4c6187f09189736170f0d41bc
--- /dev/null
+++ b/pfam_gap_rates/TK.gap.json
@@ -0,0 +1 @@
+{"family": "TK", "n_seqs": 1285, "length": 189, "gap_rates": [0.36964980544747084, 0.1424124513618677, 0.10272373540856031, 0.09727626459143969, 0.09105058365758754, 0.09105058365758754, 0.09105058365758754, 0.09105058365758754, 0.09105058365758754, 0.058365758754863814, 0.058365758754863814, 0.058365758754863814, 0.05758754863813229, 0.05680933852140078, 0.05680933852140078, 0.05758754863813229, 0.05603112840466926, 0.05603112840466926, 0.049805447470817124, 0.0490272373540856, 0.049805447470817124, 0.04824902723735409, 0.04824902723735409, 0.052140077821011675, 0.053696498054474705, 0.053696498054474705, 0.05525291828793774, 0.051361867704280154, 0.05058365758754864, 0.04824902723735409, 0.047470817120622566, 0.047470817120622566, 0.047470817120622566, 0.04824902723735409, 0.045914396887159536, 0.05058365758754864, 0.07470817120622568, 0.08482490272373541, 0.07470817120622568, 0.058365758754863814, 0.04669260700389105, 0.04824902723735409, 0.047470817120622566, 0.04824902723735409, 0.0669260700389105, 0.13852140077821012, 0.9392996108949416, 0.06536964980544747, 0.047470817120622566, 0.045914396887159536, 0.045914396887159536, 0.045136186770428015, 0.045136186770428015, 0.045136186770428015, 0.0443579766536965, 0.045914396887159536, 0.045914396887159536, 0.045914396887159536, 0.04669260700389105, 0.047470817120622566, 0.6272373540856031, 0.9377431906614786, 0.91284046692607, 0.533852140077821, 0.49494163424124515, 0.4762645914396887, 0.06303501945525292, 0.05758754863813229, 0.053696498054474705, 0.047470817120622566, 0.0443579766536965, 0.04669260700389105, 0.04669260700389105, 0.042801556420233464, 0.04046692607003891, 0.042801556420233464, 0.0443579766536965, 0.045136186770428015, 0.0443579766536965, 0.05758754863813229, 0.5089494163424124, 0.2669260700389105, 0.029571984435797664, 0.029571984435797664, 0.029571984435797664, 0.028793774319066146, 0.02801556420233463, 0.02801556420233463, 0.02801556420233463, 0.027237354085603113, 0.027237354085603113, 0.026459143968871595, 0.026459143968871595, 0.027237354085603113, 0.026459143968871595, 0.5097276264591439, 0.16186770428015565, 0.028793774319066146, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.029571984435797664, 0.029571984435797664, 0.02801556420233463, 0.028793774319066146, 0.029571984435797664, 0.02801556420233463, 0.028793774319066146, 0.028793774319066146, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.02801556420233463, 0.027237354085603113, 0.028793774319066146, 0.028793774319066146, 0.028793774319066146, 0.02801556420233463, 0.028793774319066146, 0.02801556420233463, 0.027237354085603113, 0.026459143968871595, 0.026459143968871595, 0.026459143968871595, 0.026459143968871595, 0.026459143968871595, 0.027237354085603113, 0.026459143968871595, 0.026459143968871595, 0.025680933852140077, 0.025680933852140077, 0.024902723735408562, 0.024124513618677044, 0.024124513618677044, 0.024902723735408562, 0.024124513618677044, 0.024124513618677044, 0.024124513618677044, 0.024124513618677044, 0.024124513618677044, 0.024124513618677044, 0.024124513618677044, 0.024124513618677044, 0.025680933852140077, 0.37665369649805447, 0.024902723735408562, 0.025680933852140077, 0.026459143968871595, 0.027237354085603113, 0.027237354085603113, 0.02801556420233463, 0.02801556420233463, 0.027237354085603113, 0.027237354085603113, 0.02801556420233463, 0.028793774319066146, 0.028793774319066146, 0.02801556420233463, 0.34396887159533074, 0.35019455252918286, 0.5945525291828794, 0.3587548638132296, 0.35019455252918286, 0.3291828793774319, 0.031906614785992216, 0.036575875486381325, 0.036575875486381325, 0.036575875486381325, 0.03813229571984436, 0.042801556420233464, 0.045136186770428015, 0.0443579766536965, 0.045914396887159536, 0.08715953307392996, 0.054474708171206226, 0.052140077821011675, 0.05992217898832685, 0.0622568093385214, 0.0622568093385214, 0.06459143968871596, 0.06459143968871596, 0.06459143968871596, 0.06459143968871596, 0.06770428015564202, 0.07782101167315175, 0.10505836575875487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM65.gap.json b/pfam_gap_rates/TMEM65.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5bafbe497570dd13abb93d7449172041055b7b3a
--- /dev/null
+++ b/pfam_gap_rates/TMEM65.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM65", "n_seqs": 191, "length": 111, "gap_rates": [0.8952879581151832, 0.34554973821989526, 0.18324607329842932, 0.14659685863874344, 0.14659685863874344, 0.13089005235602094, 0.1256544502617801, 0.12041884816753927, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.1099476439790576, 0.10471204188481675, 0.10471204188481675, 0.10471204188481675, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.07329842931937172, 0.07329842931937172, 0.06806282722513089, 0.07853403141361257, 0.07853403141361257, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.05235602094240838, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.05235602094240838, 0.05759162303664921, 0.05759162303664921, 0.06282722513089005, 0.07329842931937172, 0.07329842931937172, 0.07329842931937172, 0.06282722513089005, 0.08376963350785341, 0.08376963350785341, 0.09947643979057591, 0.1099476439790576, 0.1099476439790576, 0.1099476439790576, 0.1099476439790576, 0.1099476439790576, 0.11518324607329843, 0.1099476439790576, 0.1099476439790576, 0.1099476439790576, 0.9476439790575916, 0.17801047120418848, 0.14659685863874344, 0.13089005235602094, 0.9267015706806283, 0.1099476439790576, 0.11518324607329843, 0.11518324607329843, 0.1256544502617801, 0.1256544502617801, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.13089005235602094, 0.13089005235602094, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.14136125654450263, 0.14136125654450263, 0.14136125654450263, 0.14136125654450263, 0.14659685863874344, 0.14659685863874344, 0.14659685863874344, 0.14659685863874344, 0.14659685863874344, 0.14659685863874344, 0.1518324607329843, 0.1518324607329843, 0.1518324607329843, 0.16753926701570682, 0.18848167539267016, 0.24607329842931938, 0.6649214659685864], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM70.gap.json b/pfam_gap_rates/TMEM70.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00b7cfaf960927d33582166ead353e3c737e5331
--- /dev/null
+++ b/pfam_gap_rates/TMEM70.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM70", "n_seqs": 167, "length": 149, "gap_rates": [0.2994011976047904, 0.11976047904191617, 0.11976047904191617, 0.11976047904191617, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.10778443113772455, 0.10778443113772455, 0.10179640718562874, 0.10179640718562874, 0.10179640718562874, 0.10179640718562874, 0.09580838323353294, 0.09580838323353294, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.11976047904191617, 0.11377245508982035, 0.20958083832335328, 0.1377245508982036, 0.6706586826347305, 0.8982035928143712, 0.8682634730538922, 0.1317365269461078, 0.10179640718562874, 0.09580838323353294, 0.08982035928143713, 0.08383233532934131, 0.07784431137724551, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.12574850299401197, 0.11377245508982035, 0.9281437125748503, 0.10179640718562874, 0.10778443113772455, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.059880239520958084, 0.059880239520958084, 0.059880239520958084, 0.059880239520958084, 0.05389221556886228, 0.05389221556886228, 0.05389221556886228, 0.04790419161676647, 0.04790419161676647, 0.05389221556886228, 0.05389221556886228, 0.05389221556886228, 0.05389221556886228, 0.059880239520958084, 0.9221556886227545, 0.9341317365269461, 0.9341317365269461, 0.9221556886227545, 0.8922155688622755, 0.07784431137724551, 0.09580838323353294, 0.09580838323353294, 0.08982035928143713, 0.10778443113772455, 0.10778443113772455, 0.09580838323353294, 0.08982035928143713, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.08982035928143713, 0.08982035928143713, 0.08982035928143713, 0.09580838323353294, 0.10179640718562874, 0.10179640718562874, 0.11976047904191617, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1377245508982036, 0.1377245508982036, 0.1437125748502994, 0.874251497005988, 0.874251497005988, 0.874251497005988, 0.8562874251497006, 0.1437125748502994, 0.16766467065868262, 0.20359281437125748, 0.20359281437125748, 0.19161676646706588, 0.16766467065868262, 0.16766467065868262, 0.874251497005988, 0.8862275449101796, 0.8323353293413174, 0.15568862275449102, 0.15568862275449102, 0.15568862275449102, 0.16167664670658682, 0.15568862275449102, 0.15568862275449102, 0.16766467065868262, 0.17964071856287425, 0.19760479041916168, 0.20359281437125748, 0.20958083832335328, 0.2215568862275449, 0.2215568862275449, 0.8922155688622755, 0.8922155688622755, 0.2215568862275449, 0.2215568862275449, 0.2275449101796407, 0.23952095808383234, 0.2754491017964072, 0.281437125748503, 0.281437125748503, 0.2934131736526946, 0.30538922155688625, 0.30538922155688625, 0.30538922155688625, 0.31137724550898205, 0.3473053892215569, 0.3592814371257485, 0.3712574850299401, 0.6287425149700598, 0.6706586826347305, 0.718562874251497, 0.7485029940119761, 0.7604790419161677], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TM_helix.gap.json b/pfam_gap_rates/TM_helix.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07af2cb7be2f4a91cb0627921e1b8d44ac8f1694
--- /dev/null
+++ b/pfam_gap_rates/TM_helix.gap.json
@@ -0,0 +1 @@
+{"family": "TM_helix", "n_seqs": 1172, "length": 50, "gap_rates": [0.8754266211604096, 0.6049488054607508, 0.37627986348122866, 0.28924914675767915, 0.22696245733788395, 0.18515358361774745, 0.14419795221843004, 0.10238907849829351, 0.07679180887372014, 0.05802047781569966, 0.050341296928327645, 0.04436860068259386, 0.029863481228668942, 0.01962457337883959, 0.012798634812286689, 0.004266211604095563, 0.0008532423208191126, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008532423208191126, 0.0008532423208191126, 0.0008532423208191126, 0.0008532423208191126, 0.0034129692832764505, 0.016211604095563138, 0.023890784982935155, 0.040955631399317405, 0.050341296928327645, 0.06655290102389079, 0.08361774744027303, 0.11177474402730375, 0.13737201365187712, 0.17235494880546076, 0.23976109215017063, 0.378839590443686, 0.8839590443686007], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TNF.gap.json b/pfam_gap_rates/TNF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d4bc403c56307abf001f8a3bb5c013730c3eb08
--- /dev/null
+++ b/pfam_gap_rates/TNF.gap.json
@@ -0,0 +1 @@
+{"family": "TNF", "n_seqs": 350, "length": 153, "gap_rates": [0.7142857142857143, 0.4257142857142857, 0.34285714285714286, 0.34, 0.34, 0.34, 0.33714285714285713, 0.6314285714285715, 0.9171428571428571, 0.35714285714285715, 0.34, 0.32857142857142857, 0.25142857142857145, 0.21142857142857144, 0.19714285714285715, 0.15714285714285714, 0.12285714285714286, 0.10285714285714286, 0.08857142857142856, 0.07142857142857142, 0.05142857142857143, 0.045714285714285714, 0.04285714285714286, 0.8857142857142857, 0.7971428571428572, 0.022857142857142857, 0.02, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.92, 0.9142857142857143, 0.2057142857142857, 0.16285714285714287, 0.14, 0.16, 0.1742857142857143, 0.4114285714285714, 0.33714285714285713, 0.6514285714285715, 0.7285714285714285, 0.8485714285714285, 0.8971428571428571, 0.9142857142857143, 0.9085714285714286, 0.88, 0.8171428571428572, 0.6771428571428572, 0.6285714285714286, 0.21142857142857144, 0.11142857142857143, 0.054285714285714284, 0.045714285714285714, 0.037142857142857144, 0.03142857142857143, 0.02857142857142857, 0.03428571428571429, 0.05714285714285714, 0.1457142857142857, 0.15142857142857144, 0.14, 0.14, 0.29428571428571426, 0.32857142857142857, 0.9428571428571428, 0.9, 0.10285714285714286, 0.08, 0.06, 0.054285714285714284, 0.04857142857142857, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.05142857142857143, 0.045714285714285714, 0.7885714285714286, 0.03428571428571429, 0.037142857142857144, 0.03428571428571429, 0.03142857142857143, 0.04, 0.04285714285714286, 0.054285714285714284, 0.27714285714285714, 0.5028571428571429, 0.45714285714285713, 0.86, 0.9085714285714286, 0.9228571428571428, 0.8942857142857142, 0.7885714285714286, 0.10857142857142857, 0.08285714285714285, 0.05714285714285714, 0.054285714285714284, 0.054285714285714284, 0.05142857142857143, 0.045714285714285714, 0.03428571428571429, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03428571428571429, 0.037142857142857144, 0.037142857142857144, 0.8971428571428571, 0.045714285714285714, 0.045714285714285714, 0.8714285714285714, 0.05714285714285714, 0.05142857142857143, 0.04857142857142857, 0.045714285714285714, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.68, 0.9114285714285715, 0.06285714285714286, 0.054285714285714284, 0.05142857142857143, 0.054285714285714284, 0.054285714285714284, 0.054285714285714284, 0.06, 0.06285714285714286, 0.08857142857142856, 0.11428571428571428, 0.25142857142857145], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TOPRIM_C.gap.json b/pfam_gap_rates/TOPRIM_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4f779a7e633e255620813fe057fb9f0103ed657
--- /dev/null
+++ b/pfam_gap_rates/TOPRIM_C.gap.json
@@ -0,0 +1 @@
+{"family": "TOPRIM_C", "n_seqs": 486, "length": 147, "gap_rates": [0.09670781893004116, 0.09259259259259259, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06790123456790123, 0.06584362139917696, 0.06378600823045268, 0.06172839506172839, 0.059670781893004114, 0.7880658436213992, 0.8744855967078189, 0.7695473251028807, 0.07818930041152264, 0.8148148148148148, 0.7510288065843621, 0.5720164609053497, 0.053497942386831275, 0.053497942386831275, 0.04938271604938271, 0.047325102880658436, 0.047325102880658436, 0.047325102880658436, 0.047325102880658436, 0.0411522633744856, 0.0411522633744856, 0.0411522633744856, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.043209876543209874, 0.9382716049382716, 0.7242798353909465, 0.11728395061728394, 0.06584362139917696, 0.059670781893004114, 0.059670781893004114, 0.0411522633744856, 0.03909465020576132, 0.037037037037037035, 0.037037037037037035, 0.03497942386831276, 0.03497942386831276, 0.03292181069958848, 0.02880658436213992, 0.03497942386831276, 0.037037037037037035, 0.047325102880658436, 0.04938271604938271, 0.0411522633744856, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.03909465020576132, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.04938271604938271, 0.051440329218107, 0.04526748971193416, 0.0411522633744856, 0.0411522633744856, 0.0411522633744856, 0.0411522633744856, 0.0411522633744856, 0.03909465020576132, 0.037037037037037035, 0.03497942386831276, 0.08436213991769548, 0.03909465020576132, 0.053497942386831275, 0.043209876543209874, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.03497942386831276, 0.03497942386831276, 0.03497942386831276, 0.03497942386831276, 0.037037037037037035, 0.03909465020576132, 0.03909465020576132, 0.037037037037037035, 0.03497942386831276, 0.04526748971193416, 0.03909465020576132, 0.03497942386831276, 0.03497942386831276, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.043209876543209874, 0.04526748971193416, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.6934156378600823, 0.7386831275720165, 0.757201646090535, 0.7592592592592593, 0.7592592592592593, 0.7592592592592593, 0.7592592592592593, 0.757201646090535, 0.757201646090535, 0.7016460905349794, 0.6934156378600823, 0.059670781893004114, 0.06378600823045268, 0.06378600823045268, 0.06790123456790123, 0.07613168724279835, 0.7139917695473251, 0.07818930041152264, 0.08024691358024691, 0.0823045267489712, 0.08024691358024691, 0.0720164609053498, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.06995884773662552, 0.0720164609053498, 0.07407407407407407, 0.07407407407407407, 0.07613168724279835, 0.07818930041152264, 0.09465020576131687, 0.3230452674897119], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPK_catalytic.gap.json b/pfam_gap_rates/TPK_catalytic.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c683393e4bae070fc8c7ffa41731698670f21176
--- /dev/null
+++ b/pfam_gap_rates/TPK_catalytic.gap.json
@@ -0,0 +1 @@
+{"family": "TPK_catalytic", "n_seqs": 1129, "length": 141, "gap_rates": [0.933569530558016, 0.7697077059344553, 0.6465899025686448, 0.5766164747564216, 0.5217006200177148, 0.45438441098317095, 0.3985828166519043, 0.3232949512843224, 0.22940655447298494, 0.16474756421612047, 0.07617360496014172, 0.049601417183348095, 0.043401240035429584, 0.042515500442869794, 0.042515500442869794, 0.042515500442869794, 0.042515500442869794, 0.042515500442869794, 0.042515500442869794, 0.042515500442869794, 0.042515500442869794, 0.042515500442869794, 0.8184233835252436, 0.8680248007085917, 0.8937112488928255, 0.9140832595217007, 0.9247121346324181, 0.91674047829938, 0.9061116031886626, 0.8813108945969885, 0.8343666961913198, 0.7962798937112489, 0.7688219663418955, 0.7617360496014172, 0.7484499557130204, 0.7395925597874224, 0.7254207263064659, 0.045172719220549155, 0.0354295837023915, 0.03100088573959256, 0.023914968999114262, 0.022143489813994686, 0.01948627103631532, 0.01682905225863596, 0.01682905225863596, 0.015943312666076175, 0.013286093888396812, 0.013286093888396812, 0.013286093888396812, 0.00974313551815766, 0.00974313551815766, 0.007971656333038087, 0.0070859167404783, 0.007971656333038087, 0.021257750221434897, 0.03277236492471213, 0.042515500442869794, 0.050487156775907885, 0.070859167404783, 0.10628875110717449, 0.08503100088573959, 0.07263064658990256, 0.0912311780336581, 0.254207263064659, 0.9495128432240921, 0.8724534986713907, 0.1682905225863596, 0.09388839681133747, 0.046058458813108945, 0.01682905225863596, 0.00974313551815766, 0.00974313551815766, 0.00974313551815766, 0.0070859167404783, 0.3746678476527901, 0.0070859167404783, 0.0070859167404783, 0.0070859167404783, 0.0070859167404783, 0.0070859167404783, 0.0070859167404783, 0.0070859167404783, 0.0070859167404783, 0.0070859167404783, 0.0070859167404783, 0.0070859167404783, 0.007971656333038087, 0.01682905225863596, 0.015943312666076175, 0.015943312666076175, 0.01682905225863596, 0.01948627103631532, 0.018600531443755536, 0.7174490699734278, 0.7511071744906997, 0.7245349867139061, 0.6129317980513729, 0.8095659875996457, 0.9247121346324181, 0.9379982285208148, 0.9468556244464128, 0.9424269264836138, 0.9317980513728964, 0.9114260407440212, 0.7847652790079717, 0.06908768821966342, 0.06111603188662533, 0.05491585473870682, 0.010628875110717449, 0.00974313551815766, 0.00974313551815766, 0.00974313551815766, 0.00974313551815766, 0.00974313551815766, 0.010628875110717449, 0.011514614703277236, 0.012400354295837024, 0.011514614703277236, 0.011514614703277236, 0.012400354295837024, 0.012400354295837024, 0.012400354295837024, 0.013286093888396812, 0.012400354295837024, 0.015943312666076175, 0.01948627103631532, 0.023914968999114262, 0.03100088573959256, 0.050487156775907885, 0.06554472984942426, 0.141718334809566, 0.25686448184233834, 0.9477413640389726, 0.36846767050487156, 0.408325952170062, 0.48361381753764393, 0.5482728077945084, 0.6076173604960142, 0.6908768821966342, 0.7688219663418955, 0.8644818423383526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPMT.gap.json b/pfam_gap_rates/TPMT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..058d6be1a09cdef67df821c2f50a1cc8c6358d48
--- /dev/null
+++ b/pfam_gap_rates/TPMT.gap.json
@@ -0,0 +1 @@
+{"family": "TPMT", "n_seqs": 615, "length": 234, "gap_rates": [0.808130081300813, 0.624390243902439, 0.42601626016260163, 0.3089430894308943, 0.24552845528455283, 0.24227642276422764, 0.24227642276422764, 0.24227642276422764, 0.24065040650406505, 0.23739837398373984, 0.23577235772357724, 0.2146341463414634, 0.2, 0.1886178861788618, 0.18699186991869918, 0.183739837398374, 0.183739837398374, 0.183739837398374, 0.183739837398374, 0.18699186991869918, 0.183739837398374, 0.18699186991869918, 0.18048780487804877, 0.17886178861788618, 0.17073170731707318, 0.16747967479674797, 0.16747967479674797, 0.16260162601626016, 0.16422764227642275, 0.16097560975609757, 0.16260162601626016, 0.16260162601626016, 0.9105691056910569, 0.759349593495935, 0.3073170731707317, 0.2032520325203252, 0.14471544715447154, 0.12357723577235773, 0.11056910569105691, 0.1008130081300813, 0.16097560975609757, 0.08455284552845528, 0.07967479674796749, 0.07804878048780488, 0.07967479674796749, 0.07967479674796749, 0.08130081300813008, 0.08292682926829269, 0.08292682926829269, 0.08292682926829269, 0.07154471544715447, 0.07317073170731707, 0.07317073170731707, 0.07154471544715447, 0.06829268292682927, 0.06341463414634146, 0.061788617886178863, 0.061788617886178863, 0.056910569105691054, 0.05853658536585366, 0.061788617886178863, 0.9398373983739837, 0.05853658536585366, 0.055284552845528454, 0.055284552845528454, 0.055284552845528454, 0.055284552845528454, 0.055284552845528454, 0.05365853658536585, 0.05365853658536585, 0.05365853658536585, 0.05365853658536585, 0.05365853658536585, 0.056910569105691054, 0.056910569105691054, 0.05853658536585366, 0.06341463414634146, 0.11382113821138211, 0.31869918699186994, 0.22276422764227644, 0.16422764227642275, 0.13658536585365855, 0.15121951219512195, 0.16260162601626016, 0.8601626016260162, 0.9463414634146341, 0.8813008130081301, 0.8308943089430895, 0.28292682926829266, 0.22926829268292684, 0.208130081300813, 0.2097560975609756, 0.1902439024390244, 0.18699186991869918, 0.16910569105691056, 0.16747967479674797, 0.17235772357723578, 0.19349593495934958, 0.20650406504065041, 0.24552845528455283, 0.8813008130081301, 0.9414634146341463, 0.8113821138211382, 0.5252032520325203, 0.4943089430894309, 0.46178861788617886, 0.43577235772357725, 0.41300813008130083, 0.3772357723577236, 0.3008130081300813, 0.2731707317073171, 0.24878048780487805, 0.20650406504065041, 0.1772357723577236, 0.08292682926829269, 0.08130081300813008, 0.07967479674796749, 0.07804878048780488, 0.9284552845528455, 0.9252032520325203, 0.13170731707317074, 0.12357723577235773, 0.14146341463414633, 0.15121951219512195, 0.12195121951219512, 0.12195121951219512, 0.3300813008130081, 0.27479674796747966, 0.11056910569105691, 0.07154471544715447, 0.07317073170731707, 0.07154471544715447, 0.07154471544715447, 0.07154471544715447, 0.07154471544715447, 0.07154471544715447, 0.07642276422764227, 0.07642276422764227, 0.08130081300813008, 0.08130081300813008, 0.08455284552845528, 0.08617886178861789, 0.08780487804878048, 0.08617886178861789, 0.08617886178861789, 0.08617886178861789, 0.08455284552845528, 0.08455284552845528, 0.08617886178861789, 0.08617886178861789, 0.08617886178861789, 0.08617886178861789, 0.08617886178861789, 0.08780487804878048, 0.08943089430894309, 0.08780487804878048, 0.09268292682926829, 0.08943089430894309, 0.0910569105691057, 0.0910569105691057, 0.0959349593495935, 0.09268292682926829, 0.5788617886178862, 0.46991869918699186, 0.0975609756097561, 0.0959349593495935, 0.0959349593495935, 0.0991869918699187, 0.0991869918699187, 0.1008130081300813, 0.10894308943089431, 0.10894308943089431, 0.11869918699186992, 0.12032520325203253, 0.11219512195121951, 0.11056910569105691, 0.8666666666666667, 0.9203252032520325, 0.734959349593496, 0.13170731707317074, 0.11869918699186992, 0.11707317073170732, 0.12032520325203253, 0.11544715447154472, 0.11707317073170732, 0.12032520325203253, 0.13008130081300814, 0.13170731707317074, 0.13658536585365855, 0.14308943089430895, 0.15121951219512195, 0.15772357723577235, 0.16097560975609757, 0.17073170731707318, 0.1772357723577236, 0.8634146341463415, 0.20650406504065041, 0.24065040650406505, 0.3024390243902439, 0.3040650406504065, 0.32682926829268294, 0.34308943089430893, 0.35121951219512193, 0.3642276422764228, 0.367479674796748, 0.3983739837398374, 0.8601626016260162, 0.44715447154471544, 0.46504065040650405, 0.48292682926829267, 0.5089430894308943, 0.5349593495934959, 0.5642276422764227, 0.7609756097560976, 0.7235772357723578, 0.656910569105691, 0.6666666666666666, 0.6796747967479675, 0.6943089430894309, 0.7073170731707317, 0.7121951219512195, 0.7154471544715447, 0.7268292682926829, 0.7333333333333333, 0.734959349593496, 0.7382113821138211, 0.7414634146341463, 0.7495934959349594, 0.7577235772357723, 0.7626016260162601, 0.7691056910569106, 0.7886178861788617, 0.8227642276422764, 0.8747967479674796], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_19.gap.json b/pfam_gap_rates/TPR_19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8cfcafa8af1bebbe067fcdc5576e3fa690b3f4e
--- /dev/null
+++ b/pfam_gap_rates/TPR_19.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_19", "n_seqs": 5000, "length": 69, "gap_rates": [0.7998, 0.5602, 0.3916, 0.261, 0.1426, 0.0984, 0.0714, 0.0528, 0.0392, 0.032, 0.0226, 0.0166, 0.0128, 0.0076, 0.0074, 0.006, 0.0068, 0.0134, 0.0066, 0.005, 0.0074, 0.0028, 0.0116, 0.0014, 0.0014, 0.0008, 0.0008, 0.0006, 0.0006, 0.0096, 0.001, 0.0, 0.0, 0.0, 0.0012, 0.0016, 0.004, 0.0048, 0.0054, 0.0054, 0.0056, 0.0058, 0.007, 0.0088, 0.0112, 0.0164, 0.023, 0.031, 0.0396, 0.0482, 0.0618, 0.08, 0.105, 0.1276, 0.1492, 0.1702, 0.204, 0.418, 0.9382, 0.4082, 0.431, 0.4696, 0.5314, 0.6134, 0.6494, 0.6948, 0.7526, 0.8258, 0.8952], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_6.gap.json b/pfam_gap_rates/TPR_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c66dd9d6389583dfaa30f9a2dd00fa3f764bdf5b
--- /dev/null
+++ b/pfam_gap_rates/TPR_6.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_6", "n_seqs": 3009, "length": 34, "gap_rates": [0.7188434695912264, 0.4373546028580924, 0.26886008640744435, 0.15387171817879694, 0.09737454303755401, 0.0581588567630442, 0.042539049518112326, 0.035227650382186775, 0.026254569624459954, 0.01694915254237288, 0.01296111665004985, 0.009637753406447324, 0.8906613492854769, 0.006646726487205052, 0.06746427384513128, 0.0013293452974410102, 0.0013293452974410102, 0.0006646726487205051, 0.0, 0.0, 0.0, 0.0, 0.00033233632436025255, 0.00033233632436025255, 0.003323363243602526, 0.006979062811565304, 0.015287470920571618, 0.04120970422067132, 0.06414091060152875, 0.11698238617480891, 0.15819209039548024, 0.20073113991359257, 0.2888002658690595, 0.5938850116317713], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPX2.gap.json b/pfam_gap_rates/TPX2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fb9cbfcc20c7de262eab1453e3cec268ce57c43
--- /dev/null
+++ b/pfam_gap_rates/TPX2.gap.json
@@ -0,0 +1 @@
+{"family": "TPX2", "n_seqs": 432, "length": 57, "gap_rates": [0.10185185185185185, 0.07175925925925926, 0.03935185185185185, 0.027777777777777776, 0.02546296296296296, 0.02546296296296296, 0.02546296296296296, 0.02546296296296296, 0.02546296296296296, 0.02546296296296296, 0.023148148148148147, 0.020833333333333332, 0.04398148148148148, 0.04398148148148148, 0.041666666666666664, 0.011574074074074073, 0.011574074074074073, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.011574074074074073, 0.011574074074074073, 0.011574074074074073, 0.011574074074074073, 0.011574074074074073, 0.009259259259259259, 0.009259259259259259, 0.006944444444444444, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.011574074074074073, 0.011574074074074073, 0.011574074074074073, 0.011574074074074073, 0.011574074074074073, 0.016203703703703703, 0.016203703703703703, 0.013888888888888888, 0.011574074074074073, 0.011574074074074073, 0.011574074074074073, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.011574074074074073, 0.011574074074074073, 0.011574074074074073, 0.018518518518518517, 0.08564814814814815, 0.09953703703703703], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TRAP-gamma.gap.json b/pfam_gap_rates/TRAP-gamma.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a5aa8febe504b796473bb08f59aceb2d3be0170
--- /dev/null
+++ b/pfam_gap_rates/TRAP-gamma.gap.json
@@ -0,0 +1 @@
+{"family": "TRAP-gamma", "n_seqs": 106, "length": 172, "gap_rates": [0.33962264150943394, 0.3113207547169811, 0.3113207547169811, 0.3018867924528302, 0.3018867924528302, 0.3018867924528302, 0.3018867924528302, 0.29245283018867924, 0.2830188679245283, 0.2830188679245283, 0.27358490566037735, 0.25471698113207547, 0.24528301886792453, 0.2358490566037736, 0.22641509433962265, 0.22641509433962265, 0.2169811320754717, 0.19811320754716982, 0.18867924528301888, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.16981132075471697, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.1320754716981132, 0.1320754716981132, 0.1320754716981132, 0.1320754716981132, 0.14150943396226415, 0.1320754716981132, 0.1320754716981132, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.11320754716981132, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.11320754716981132, 0.12264150943396226, 0.1320754716981132, 0.1320754716981132, 0.1320754716981132, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.1509433962264151, 0.1509433962264151, 0.16037735849056603, 0.16037735849056603, 0.7830188679245284, 0.7830188679245284, 0.18867924528301888, 0.1509433962264151, 0.1320754716981132, 0.1320754716981132, 0.1320754716981132, 0.1320754716981132, 0.1320754716981132, 0.1320754716981132, 0.12264150943396226, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.09433962264150944, 0.12264150943396226, 0.1320754716981132, 0.14150943396226415, 0.1509433962264151, 0.1509433962264151, 0.14150943396226415, 0.14150943396226415, 0.16037735849056603, 0.16037735849056603, 0.16981132075471697, 0.1509433962264151, 0.1320754716981132, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.16981132075471697, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.12264150943396226, 0.14150943396226415, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.2169811320754717, 0.2169811320754717, 0.22641509433962265, 0.22641509433962265, 0.22641509433962265, 0.22641509433962265, 0.2358490566037736, 0.2358490566037736, 0.2358490566037736, 0.2358490566037736, 0.2358490566037736, 0.24528301886792453, 0.24528301886792453, 0.3018867924528302, 0.3584905660377358], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TRAUB.gap.json b/pfam_gap_rates/TRAUB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03835995be7245515f2f6ec191df79bb526b829c
--- /dev/null
+++ b/pfam_gap_rates/TRAUB.gap.json
@@ -0,0 +1 @@
+{"family": "TRAUB", "n_seqs": 316, "length": 97, "gap_rates": [0.0949367088607595, 0.08227848101265822, 0.07911392405063292, 0.07278481012658228, 0.06645569620253164, 0.06645569620253164, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.06329113924050633, 0.0949367088607595, 0.20253164556962025, 0.47468354430379744, 0.4525316455696203, 0.4620253164556962, 0.4050632911392405, 0.8006329113924051, 0.9113924050632911, 0.9430379746835443, 0.8892405063291139, 0.7848101265822784, 0.3227848101265823, 0.2689873417721519, 0.23417721518987342, 0.25, 0.12341772151898735, 0.9462025316455697, 0.9493670886075949, 0.939873417721519, 0.060126582278481014, 0.05063291139240506, 0.09177215189873418, 0.10759493670886076, 0.06962025316455696, 0.03481012658227848, 0.022151898734177215, 0.022151898734177215, 0.060126582278481014, 0.09177215189873418, 0.9050632911392406, 0.6012658227848101, 0.25, 0.03164556962025317, 0.015822784810126583, 0.015822784810126583, 0.012658227848101266, 0.012658227848101266, 0.0189873417721519, 0.00949367088607595, 0.00949367088607595, 0.012658227848101266, 0.012658227848101266, 0.00949367088607595, 0.00949367088607595, 0.0031645569620253164, 0.022151898734177215, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.028481012658227847, 0.028481012658227847, 0.028481012658227847, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03481012658227848, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.8575949367088608, 0.23734177215189872, 0.9493670886075949, 0.9050632911392406, 0.0759493670886076, 0.07278481012658228, 0.0759493670886076, 0.08227848101265822, 0.08860759493670886, 0.08544303797468354, 0.09177215189873418, 0.23417721518987342, 0.12341772151898735, 0.12025316455696203, 0.12025316455696203, 0.12341772151898735, 0.1360759493670886, 0.14556962025316456, 0.14556962025316456, 0.18037974683544303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TRP.gap.json b/pfam_gap_rates/TRP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f289917ff24a8c9b0afb6d2f4b559b5b368b766b
--- /dev/null
+++ b/pfam_gap_rates/TRP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tad.gap.json b/pfam_gap_rates/Tad.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57440426cb03c1c997fb5d333a65ef9d206367d7
--- /dev/null
+++ b/pfam_gap_rates/Tad.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Taxilin.gap.json b/pfam_gap_rates/Taxilin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c17bd8e0cb02418a931423d46f6a94c43b2c772a
--- /dev/null
+++ b/pfam_gap_rates/Taxilin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Terminase_1.gap.json b/pfam_gap_rates/Terminase_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7926dbcf47c06146715fd888fe0da0b39230afa9
--- /dev/null
+++ b/pfam_gap_rates/Terminase_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Terminase_6.gap.json b/pfam_gap_rates/Terminase_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f58738cb85c310604ae8e5f785048632bf05d27
--- /dev/null
+++ b/pfam_gap_rates/Terminase_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TetR_C_6.gap.json b/pfam_gap_rates/TetR_C_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b87a791ea615f523e32c0b8d6be4e201b3346047
--- /dev/null
+++ b/pfam_gap_rates/TetR_C_6.gap.json
@@ -0,0 +1 @@
+{"family": "TetR_C_6", "n_seqs": 1242, "length": 115, "gap_rates": [0.7085346215780999, 0.5933977455716586, 0.48148148148148145, 0.4227053140096618, 0.3679549114331723, 0.33816425120772947, 0.3172302737520129, 0.29790660225442833, 0.2890499194847021, 0.28180354267310787, 0.26972624798711753, 0.2632850241545894, 0.25442834138486314, 0.250402576489533, 0.2922705314009662, 0.24074074074074073, 0.20611916264090177, 0.1859903381642512, 0.1747181964573269, 0.16747181964573268, 0.20209339774557167, 0.1457326892109501, 0.12318840579710146, 0.10628019323671498, 0.09903381642512077, 0.09822866344605476, 0.09178743961352658, 0.0853462157809984, 0.07890499194847021, 0.07407407407407407, 0.071658615136876, 0.06280193236714976, 0.05877616747181964, 0.04911433172302738, 0.04106280193236715, 0.03462157809983897, 0.033011272141706925, 0.04508856682769726, 0.0322061191626409, 0.027375201288244767, 0.018518518518518517, 0.01610305958132045, 0.012077294685990338, 0.011272141706924315, 0.010466988727858293, 0.00966183574879227, 0.007246376811594203, 0.005636070853462158, 0.00322061191626409, 0.00322061191626409, 0.0024154589371980675, 0.0024154589371980675, 0.004025764895330112, 0.00322061191626409, 0.00322061191626409, 0.00322061191626409, 0.001610305958132045, 0.001610305958132045, 0.001610305958132045, 0.012077294685990338, 0.015297906602254429, 0.013687600644122383, 0.014492753623188406, 0.45652173913043476, 0.2922705314009662, 0.27053140096618356, 0.2181964573268921, 0.19404186795491143, 0.1706924315619968, 0.06924315619967794, 0.018518518518518517, 0.008856682769726247, 0.008051529790660225, 0.00644122383252818, 0.004830917874396135, 0.008051529790660225, 0.00322061191626409, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.004830917874396135, 0.007246376811594203, 0.00322061191626409, 0.004830917874396135, 0.005636070853462158, 0.00644122383252818, 0.008856682769726247, 0.011272141706924315, 0.027375201288244767, 0.029790660225442835, 0.030595813204508857, 0.25925925925925924, 0.16344605475040258, 0.0571658615136876, 0.05636070853462158, 0.05877616747181964, 0.10225442834138486, 0.10225442834138486, 0.12077294685990338, 0.10869565217391304, 0.1320450885668277, 0.1529790660225443, 0.16747181964573268, 0.17954911433172302, 0.19484702093397746, 0.21980676328502416, 0.24235104669887278, 0.2713365539452496, 0.3357487922705314, 0.40096618357487923, 0.47987117552334946, 0.6304347826086957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ThiS.gap.json b/pfam_gap_rates/ThiS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01eda05f6f6fd2bd3da80384383b70a4e026590e
--- /dev/null
+++ b/pfam_gap_rates/ThiS.gap.json
@@ -0,0 +1 @@
+{"family": "ThiS", "n_seqs": 3121, "length": 90, "gap_rates": [0.4931111823133611, 0.3287407882089074, 0.27395065684075615, 0.25216276834347967, 0.23966677347004164, 0.24030759371996155, 0.23646267222044218, 0.23197693047100287, 0.2268503684716437, 0.218840115347645, 0.21339314322332587, 0.2412688240948414, 0.7369432874078821, 0.9006728612624159, 0.6142262095482217, 0.43319448894585066, 0.3489266260813842, 0.3229734059596283, 0.3024671579621916, 0.2842037808394745, 0.2675424543415572, 0.2518423582185197, 0.2274911887215636, 0.01986542774751682, 0.015700096123037487, 0.014098045498237744, 0.013457225248317847, 0.012495994873438, 0.011214354373598205, 0.01025312399871836, 0.009612303748798462, 0.008651073373918615, 0.008010253123998718, 0.00768984299903877, 0.009291893623838513, 0.010893944248638257, 0.011534764498558154, 0.013777635373277796, 0.3774431272028196, 0.4495354053188081, 0.4428067926946492, 0.4344761294456905, 0.5975648830503044, 0.7007369432874079, 0.7917334187760333, 0.8010253123998718, 0.8458827298942646, 0.7981416212752322, 0.7850048061518744, 0.6552387055430952, 0.4892662608138417, 0.4037167574495354, 0.3979493752002563, 0.014738865748157642, 0.0016020506247997437, 0.0016020506247997437, 0.0009612303748798462, 0.0006408202499198974, 0.0006408202499198974, 0.0, 0.0, 0.0003204101249599487, 0.0, 0.0, 0.0, 0.0, 0.0003204101249599487, 0.4476129445690484, 0.4136494713232938, 0.38769625120153794, 0.3482858058314643, 0.006408202499198975, 0.0016020506247997437, 0.001281640499839795, 0.0032041012495994873, 0.00256328099967959, 0.0016020506247997437, 0.0019224607497596924, 0.003844921499519385, 0.0006408202499198974, 0.0006408202499198974, 0.0009612303748798462, 0.0019224607497596924, 0.003844921499519385, 0.005767382249279077, 0.010893944248638257, 0.01537968599807754, 0.018904197372636974, 0.035885933995514256, 0.03780839474527395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ThiW.gap.json b/pfam_gap_rates/ThiW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18822e92254aeb961cf3b9863865635dc384a624
--- /dev/null
+++ b/pfam_gap_rates/ThiW.gap.json
@@ -0,0 +1 @@
+{"family": "ThiW", "n_seqs": 211, "length": 154, "gap_rates": [0.18009478672985782, 0.061611374407582936, 0.023696682464454975, 0.014218009478672985, 0.014218009478672985, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.3791469194312796, 0.009478672985781991, 0.009478672985781991, 0.25118483412322273, 0.25118483412322273, 0.25118483412322273, 0.25118483412322273, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.018957345971563982, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.018957345971563982, 0.023696682464454975, 0.014218009478672985, 0.014218009478672985, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.014218009478672985, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.8720379146919431, 0.004739336492890996, 0.018957345971563982, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004739336492890996, 0.0, 0.933649289099526, 0.0, 0.0, 0.0, 0.004739336492890996, 0.0, 0.8199052132701422, 0.8957345971563981, 0.6066350710900474, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.009478672985781991, 0.061611374407582936, 0.10900473933649289, 0.17061611374407584, 0.3222748815165877], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thiamine_BP.gap.json b/pfam_gap_rates/Thiamine_BP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..561d2ba6f2f878688fe8bfe433d1e058db6a6d68
--- /dev/null
+++ b/pfam_gap_rates/Thiamine_BP.gap.json
@@ -0,0 +1 @@
+{"family": "Thiamine_BP", "n_seqs": 821, "length": 97, "gap_rates": [0.30572472594397077, 0.08647990255785627, 0.06090133982947625, 0.05968331303288672, 0.058465286236297195, 0.05115712545676005, 0.049939098660170524, 0.040194884287454324, 0.09744214372716199, 0.09013398294762484, 0.37880633373934225, 0.9159561510353228, 0.8611449451887941, 0.048721071863580996, 0.03654080389768575, 0.03288672350791717, 0.028014616321559074, 0.018270401948842874, 0.018270401948842874, 0.01705237515225335, 0.015834348355663823, 0.015834348355663823, 0.015834348355663823, 0.015834348355663823, 0.015834348355663823, 0.015834348355663823, 0.014616321559074299, 0.014616321559074299, 0.8879415347137637, 0.014616321559074299, 0.014616321559074299, 0.014616321559074299, 0.013398294762484775, 0.013398294762484775, 0.013398294762484775, 0.012180267965895249, 0.012180267965895249, 0.010962241169305725, 0.010962241169305725, 0.0097442143727162, 0.008526187576126675, 0.010962241169305725, 0.013398294762484775, 0.012180267965895249, 0.010962241169305725, 0.013398294762484775, 0.010962241169305725, 0.010962241169305725, 0.879415347137637, 0.0097442143727162, 0.0097442143727162, 0.0097442143727162, 0.008526187576126675, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.04263093788063337, 0.02679658952496955, 0.023142509135200974, 0.32399512789281365, 0.015834348355663823, 0.008526187576126675, 0.0097442143727162, 0.0097442143727162, 0.0097442143727162, 0.013398294762484775, 0.015834348355663823, 0.015834348355663823, 0.024360535931790498, 0.028014616321559074, 0.04263093788063337, 0.05481120584652863, 0.06090133982947625, 0.06699147381242387, 0.06577344701583435, 0.06699147381242387, 0.18635809987819732, 0.9220462850182704, 0.0730816077953715, 0.07551766138855055, 0.0779537149817296, 0.08647990255785627, 0.0876979293544458, 0.09135200974421437, 0.09987819732034105, 0.11693057247259439, 0.1278928136419001, 0.16443361753958588, 0.5566382460414129], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredoxin_3.gap.json b/pfam_gap_rates/Thioredoxin_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1aec6f494aa52810bf02838d8aa80ab4e356eff3
--- /dev/null
+++ b/pfam_gap_rates/Thioredoxin_3.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredoxin_3", "n_seqs": 1273, "length": 84, "gap_rates": [0.6999214454045561, 0.44461901021209743, 0.3472113118617439, 0.3150039277297722, 0.2906520031421838, 0.7541241162608012, 0.09190887666928516, 0.04948939512961508, 0.031421838177533384, 0.022780832678711706, 0.022780832678711706, 0.0204241948153967, 0.0204241948153967, 0.0204241948153967, 0.0204241948153967, 0.7564807541241163, 0.02356637863315004, 0.02199528672427337, 0.019638648860958365, 0.018067556952081697, 0.01335428122545169, 0.01335428122545169, 0.010997643362136685, 0.01178318931657502, 0.009426551453260016, 0.01178318931657502, 0.01021209740769835, 0.009426551453260016, 0.009426551453260016, 0.8397486252945797, 0.007855459544383346, 0.8908091123330715, 0.009426551453260016, 0.01021209740769835, 0.009426551453260016, 0.9450117831893166, 0.9253731343283582, 0.00864100549882168, 0.007855459544383346, 0.006284367635506678, 0.0054988216810683424, 0.007069913589945012, 0.9033778476040848, 0.0054988216810683424, 0.006284367635506678, 0.003142183817753339, 0.0015710919088766694, 0.002356637863315004, 0.003142183817753339, 0.5121759622937941, 0.004713275726630008, 0.003142183817753339, 0.0015710919088766694, 0.006284367635506678, 0.0007855459544383347, 0.0, 0.0007855459544383347, 0.0007855459544383347, 0.0007855459544383347, 0.0007855459544383347, 0.0015710919088766694, 0.002356637863315004, 0.003927729772191673, 0.015710919088766692, 0.01021209740769835, 0.014925373134328358, 0.025923016496465043, 0.036920659858601726, 0.04399057344854674, 0.051846032992930086, 0.051846032992930086, 0.20502749410840534, 0.10997643362136685, 0.0769835035349568, 0.0793401413982718, 0.08483896307934014, 0.08641005498821681, 0.09662215239591516, 0.10840534171249018, 0.14454045561665357, 0.18695993715632364, 0.3087195600942655, 0.45011783189316573, 0.8436763550667714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredoxin_4.gap.json b/pfam_gap_rates/Thioredoxin_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4217e5efe84ebbbcce9d53fd94d3d3c953af82b4
--- /dev/null
+++ b/pfam_gap_rates/Thioredoxin_4.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredoxin_4", "n_seqs": 2453, "length": 213, "gap_rates": [0.7867916836526702, 0.5646147574398696, 0.4264166326946596, 0.3220546269873624, 0.286180187525479, 0.25805136567468406, 0.24092947411333063, 0.2311455360782715, 0.207501019160212, 0.18344883815735832, 0.15491235222176927, 0.09987770077456176, 0.07093355075417855, 0.06726457399103139, 0.040766408479412965, 0.03995108030982471, 0.03995108030982471, 0.039543416225030575, 0.038320423970648186, 0.038320423970648186, 0.037912759885854054, 0.036689767631471665, 0.03465144720750102, 0.034243783122706886, 0.03383611903791276, 0.03261312678353037, 0.03342845495311863, 0.033020790868324504, 0.03261312678353037, 0.03139013452914798, 0.031797798613942115, 0.030574806359559722, 0.030982470444353854, 0.031797798613942115, 0.7350183448838158, 0.029351814105177332, 0.028536485935589075, 0.02323685283326539, 0.02119853240929474, 0.019160211985324093, 0.10680799021606197, 0.5238483489604566, 0.493681206685691, 0.07827150428047289, 0.028128821850794947, 0.9225438238891154, 0.019160211985324093, 0.017529555646147575, 0.017529555646147575, 0.016714227476559314, 0.015898899306971057, 0.017121891561353443, 0.017529555646147575, 0.016714227476559314, 0.016306563391765186, 0.9005299633102324, 0.9188748471259682, 0.9359967386873217, 0.9094985731757033, 0.8878923766816144, 0.03465144720750102, 0.03872808805544232, 0.023644516918059518, 0.020383204239706482, 0.02079086832450061, 0.048512026090501426, 0.717081125152874, 0.3603750509580106, 0.16306563391765186, 0.02242152466367713, 0.019975540154912354, 0.016714227476559314, 0.015898899306971057, 0.016306563391765186, 0.015898899306971057, 0.015898899306971057, 0.016714227476559314, 0.016306563391765186, 0.017121891561353443, 0.01956787607011822, 0.027313493681206686, 0.027313493681206686, 0.040766408479412965, 0.9429270281288219, 0.8092132083163474, 0.5658377496942519, 0.3921728495719527, 0.038320423970648186, 0.02282918874847126, 0.01956787607011822, 0.01956787607011822, 0.017937219730941704, 0.017121891561353443, 0.020383204239706482, 0.06767223807582552, 0.037912759885854054, 0.03220546269873624, 0.030982470444353854, 0.034243783122706886, 0.036689767631471665, 0.03465144720750102, 0.03465144720750102, 0.034243783122706886, 0.03465144720750102, 0.036689767631471665, 0.03587443946188341, 0.5230330207908683, 0.6404402772115777, 0.7533632286995515, 0.9017529555646148, 0.9437423562984101, 0.9221361598043213, 0.8540562576437016, 0.6856909906237261, 0.5727680391357521, 0.4019567876070118, 0.1716265796983286, 0.14635140644109254, 0.12719119445576846, 0.9017529555646148, 0.9380350591112923, 0.908683245006115, 0.8935996738687322, 0.1292295148797391, 0.12882185079494496, 0.9266204647370566, 0.8850387280880554, 0.15287403179779863, 0.06481858948226661, 0.7537708927843457, 0.792498980839788, 0.8075825519771708, 0.8601712189156135, 0.8968609865470852, 0.9237668161434978, 0.9380350591112923, 0.9461883408071748, 0.9323277619241744, 0.9070525886669385, 0.8805544231553201, 0.8312270688952303, 0.8026905829596412, 0.7664084794129638, 0.726457399103139, 0.058703628210354665, 0.060334284549531186, 0.05707297187117815, 0.07256420709335508, 0.9135752140236445, 0.04891969017529556, 0.04280472890338361, 0.04362005707297187, 0.04606604158173665, 0.047289033836119036, 0.05666530778638402, 0.07582551977170811, 0.060334284549531186, 0.04362005707297187, 0.04239706481858948, 0.04158173664900122, 0.040766408479412965, 0.0411740725642071, 0.04932735426008968, 0.04280472890338361, 0.041989400733795354, 0.040766408479412965, 0.04606604158173665, 0.04565837749694252, 0.04565837749694252, 0.04239706481858948, 0.04035874439461883, 0.0411740725642071, 0.04239706481858948, 0.8622095393395842, 0.04443538524256013, 0.04321239298817774, 0.04362005707297187, 0.044027721157766, 0.04484304932735426, 0.04525071341214839, 0.04525071341214839, 0.04565837749694252, 0.04565837749694252, 0.047289033836119036, 0.04769669792091317, 0.04891969017529556, 0.050958010599266204, 0.9425193640440277, 0.9335507541785568, 0.06237260497350183, 0.0701182225845903, 0.07541785568691398, 0.08397880146759071, 0.9376273950264982, 0.9205055034651447, 0.1072156543008561, 0.9474113330615572, 0.9376273950264982, 0.12841418671015084, 0.30004076640847943, 0.17977986139421118, 0.19200978393803506, 0.2079086832450061, 0.2213615980432124, 0.2311455360782715, 0.24256013045250713, 0.25234406848756624, 0.27028128821850794, 0.28699551569506726, 0.3122706889523033, 0.3493681206685691, 0.48878923766816146, 0.8255197717081125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ThrE_2.gap.json b/pfam_gap_rates/ThrE_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bae8b5b5c59037acfe0fd6692985d708e8b09a4b
--- /dev/null
+++ b/pfam_gap_rates/ThrE_2.gap.json
@@ -0,0 +1 @@
+{"family": "ThrE_2", "n_seqs": 1154, "length": 152, "gap_rates": [0.7435008665511266, 0.3396880415944541, 0.22790294627383015, 0.15944540727902945, 0.1265164644714038, 0.0927209705372617, 0.07538994800693241, 0.06759098786828423, 0.06152512998266898, 0.05805892547660312, 0.05199306759098787, 0.047660311958405546, 0.04592720970537262, 0.04419410745233969, 0.04419410745233969, 0.0415944540727903, 0.038128249566724434, 0.03292894280762565, 0.02859618717504333, 0.024263431542461005, 0.021663778162911613, 0.01993067590987868, 0.01559792027729636, 0.01559792027729636, 0.014731369150779897, 0.014731369150779897, 0.01559792027729636, 0.014731369150779897, 0.01386481802426343, 0.01386481802426343, 0.012998266897746967, 0.012998266897746967, 0.012998266897746967, 0.014731369150779897, 0.014731369150779897, 0.01386481802426343, 0.01386481802426343, 0.01386481802426343, 0.019064124783362217, 0.03552859618717504, 0.019064124783362217, 0.01993067590987868, 0.6793760831889082, 0.022530329289428077, 0.019064124783362217, 0.9237435008665511, 0.02339688041594454, 0.011265164644714038, 0.022530329289428077, 0.01733102253032929, 0.012131715771230503, 0.009532062391681109, 0.009532062391681109, 0.008665511265164644, 0.009532062391681109, 0.009532062391681109, 0.009532062391681109, 0.008665511265164644, 0.009532062391681109, 0.008665511265164644, 0.008665511265164644, 0.00779896013864818, 0.00779896013864818, 0.00779896013864818, 0.00779896013864818, 0.00779896013864818, 0.00779896013864818, 0.00779896013864818, 0.008665511265164644, 0.008665511265164644, 0.009532062391681109, 0.02079722703639515, 0.022530329289428077, 0.02339688041594454, 0.022530329289428077, 0.021663778162911613, 0.021663778162911613, 0.021663778162911613, 0.021663778162911613, 0.022530329289428077, 0.02079722703639515, 0.02079722703639515, 0.02079722703639515, 0.02079722703639515, 0.021663778162911613, 0.021663778162911613, 0.02079722703639515, 0.02079722703639515, 0.9376083188908145, 0.02079722703639515, 0.02339688041594454, 0.024263431542461005, 0.025996533795493933, 0.02772963604852686, 0.02859618717504333, 0.02772963604852686, 0.029462738301559793, 0.02859618717504333, 0.026863084922010397, 0.02772963604852686, 0.032062391681109186, 0.9194107452339688, 0.9341421143847487, 0.9428076256499134, 0.9488734835355286, 0.9454072790294628, 0.9393414211438474, 0.9280762564991335, 0.9107452339688041, 0.032062391681109186, 0.07192374350086655, 0.04419410745233969, 0.7972270363951474, 0.8102253032928943, 0.8466204506065858, 0.8726169844020797, 0.9272097053726169, 0.9462738301559792, 0.9341421143847487, 0.9133448873483535, 0.8604852686308492, 0.8240901213171578, 0.8050259965337955, 0.7608318890814558, 0.03726169844020797, 0.03292894280762565, 0.03119584055459272, 0.030329289428076257, 0.03119584055459272, 0.032062391681109186, 0.032062391681109186, 0.03119584055459272, 0.030329289428076257, 0.03119584055459272, 0.030329289428076257, 0.030329289428076257, 0.030329289428076257, 0.03119584055459272, 0.03119584055459272, 0.03119584055459272, 0.032062391681109186, 0.032062391681109186, 0.03292894280762565, 0.03292894280762565, 0.033795493934142114, 0.03466204506065858, 0.036395147313691506, 0.04246100519930676, 0.07192374350086655, 0.18457538994800693, 0.464471403812825, 0.8630849220103987], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thy1.gap.json b/pfam_gap_rates/Thy1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91a26587a887361ec87a78971c38a70648750716
--- /dev/null
+++ b/pfam_gap_rates/Thy1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Thymidylat_synt.gap.json b/pfam_gap_rates/Thymidylat_synt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2c59581d8b99f717ea3761aa78b6f734d91d2c9
--- /dev/null
+++ b/pfam_gap_rates/Thymidylat_synt.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tim44.gap.json b/pfam_gap_rates/Tim44.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d1be6cf755cdc04d69e9afdb60aba7df9d2ab23
--- /dev/null
+++ b/pfam_gap_rates/Tim44.gap.json
@@ -0,0 +1 @@
+{"family": "Tim44", "n_seqs": 1010, "length": 162, "gap_rates": [0.5524752475247525, 0.4485148514851485, 0.37722772277227723, 0.33762376237623765, 0.31683168316831684, 0.29207920792079206, 0.27623762376237626, 0.2623762376237624, 0.22772277227722773, 0.1801980198019802, 0.15346534653465346, 0.12178217821782178, 0.11089108910891089, 0.10594059405940594, 0.09702970297029703, 0.09405940594059406, 0.08415841584158416, 0.07920792079207921, 0.07326732673267326, 0.0900990099009901, 0.046534653465346534, 0.03663366336633663, 0.027722772277227723, 0.02574257425742574, 0.02574257425742574, 0.02574257425742574, 0.02574257425742574, 0.02574257425742574, 0.02574257425742574, 0.7415841584158416, 0.027722772277227723, 0.02574257425742574, 0.02277227722772277, 0.020792079207920793, 0.01782178217821782, 0.01782178217821782, 0.016831683168316833, 0.015841584158415842, 0.015841584158415842, 0.015841584158415842, 0.015841584158415842, 0.015841584158415842, 0.015841584158415842, 0.015841584158415842, 0.015841584158415842, 0.01782178217821782, 0.01782178217821782, 0.015841584158415842, 0.015841584158415842, 0.015841584158415842, 0.013861386138613862, 0.015841584158415842, 0.01782178217821782, 0.01881188118811881, 0.01881188118811881, 0.01881188118811881, 0.019801980198019802, 0.020792079207920793, 0.01881188118811881, 0.019801980198019802, 0.02277227722772277, 0.02277227722772277, 0.8564356435643564, 0.13762376237623763, 0.13861386138613863, 0.1306930693069307, 0.05247524752475247, 0.9326732673267327, 0.9356435643564357, 0.9396039603960396, 0.9455445544554455, 0.9386138613861386, 0.9346534653465347, 0.9257425742574258, 0.032673267326732675, 0.027722772277227723, 0.028712871287128714, 0.033663366336633666, 0.030693069306930693, 0.026732673267326732, 0.028712871287128714, 0.02277227722772277, 0.023762376237623763, 0.026732673267326732, 0.027722772277227723, 0.019801980198019802, 0.016831683168316833, 0.016831683168316833, 0.01782178217821782, 0.01782178217821782, 0.01782178217821782, 0.01881188118811881, 0.019801980198019802, 0.01782178217821782, 0.01881188118811881, 0.7900990099009901, 0.6504950495049505, 0.05643564356435644, 0.054455445544554455, 0.054455445544554455, 0.05247524752475247, 0.04950495049504951, 0.01881188118811881, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.17623762376237623, 0.17623762376237623, 0.18118811881188118, 0.17722772277227722, 0.18217821782178217, 0.1782178217821782, 0.1792079207920792, 0.7079207920792079, 0.17227722772277226, 0.17227722772277226, 0.17524752475247524, 0.17722772277227722, 0.05148514851485148, 0.07227722772277227, 0.05841584158415842, 0.0594059405940594, 0.04950495049504951, 0.04554455445544554, 0.039603960396039604, 0.1198019801980198, 0.062376237623762376, 0.05841584158415842, 0.041584158415841586, 0.04257425742574258, 0.03861386138613861, 0.039603960396039604, 0.041584158415841586, 0.040594059405940595, 0.040594059405940595, 0.04356435643564356, 0.04554455445544554, 0.046534653465346534, 0.047524752475247525, 0.048514851485148516, 0.054455445544554455, 0.05841584158415842, 0.7198019801980198, 0.8138613861386138, 0.7108910891089109, 0.14356435643564355, 0.11089108910891089, 0.12376237623762376, 0.1297029702970297, 0.799009900990099, 0.25643564356435644, 0.2099009900990099, 0.16534653465346535, 0.12475247524752475, 0.12673267326732673, 0.12772277227722773, 0.13663366336633664, 0.14455445544554454, 0.20297029702970298, 0.44653465346534654, 0.7465346534653465], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tissue_fac.gap.json b/pfam_gap_rates/Tissue_fac.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27d6837c577a2c9ad6e0c79329f920059e02c428
--- /dev/null
+++ b/pfam_gap_rates/Tissue_fac.gap.json
@@ -0,0 +1 @@
+{"family": "Tissue_fac", "n_seqs": 208, "length": 118, "gap_rates": [0.9375, 0.8365384615384616, 0.7067307692307693, 0.6105769230769231, 0.5721153846153846, 0.5336538461538461, 0.5, 0.4807692307692308, 0.47115384615384615, 0.4567307692307692, 0.46153846153846156, 0.47115384615384615, 0.9182692307692307, 0.9230769230769231, 0.8846153846153846, 0.5, 0.3798076923076923, 0.33653846153846156, 0.28365384615384615, 0.2548076923076923, 0.22596153846153846, 0.1971153846153846, 0.17307692307692307, 0.125, 0.09134615384615384, 0.08653846153846154, 0.11057692307692307, 0.11057692307692307, 0.08653846153846154, 0.07692307692307693, 0.07692307692307693, 0.0625, 0.0625, 0.0673076923076923, 0.0673076923076923, 0.0673076923076923, 0.057692307692307696, 0.04807692307692308, 0.04807692307692308, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.2692307692307692, 0.16826923076923078, 0.15384615384615385, 0.057692307692307696, 0.04326923076923077, 0.8701923076923077, 0.038461538461538464, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.8221153846153846, 0.8894230769230769, 0.8894230769230769, 0.8653846153846154, 0.6875, 0.2980769230769231, 0.14903846153846154, 0.07692307692307693, 0.0673076923076923, 0.028846153846153848, 0.019230769230769232, 0.02403846153846154, 0.02403846153846154, 0.019230769230769232, 0.019230769230769232, 0.25961538461538464, 0.22596153846153846, 0.028846153846153848, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.028846153846153848, 0.02403846153846154, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.02403846153846154, 0.019230769230769232, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.09134615384615384, 0.24519230769230768, 0.9086538461538461, 0.9423076923076923, 0.8461538461538461, 0.08653846153846154, 0.02403846153846154, 0.028846153846153848, 0.02403846153846154, 0.019230769230769232, 0.019230769230769232, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.038461538461538464, 0.038461538461538464, 0.04326923076923077, 0.07692307692307693, 0.08653846153846154, 0.09134615384615384, 0.14423076923076922, 0.1875, 0.25, 0.28846153846153844, 0.40384615384615385], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tmem26.gap.json b/pfam_gap_rates/Tmem26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c930caabeae3bee380610a3a3b1a09e631df948
--- /dev/null
+++ b/pfam_gap_rates/Tmem26.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tmemb_161AB.gap.json b/pfam_gap_rates/Tmemb_161AB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8e5bc58e9581956e67b7e86101ceeac5a8f3095
--- /dev/null
+++ b/pfam_gap_rates/Tmemb_161AB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TniQ.gap.json b/pfam_gap_rates/TniQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf4245a37f9cb5b8534123ff5abc423b47399aff
--- /dev/null
+++ b/pfam_gap_rates/TniQ.gap.json
@@ -0,0 +1 @@
+{"family": "TniQ", "n_seqs": 325, "length": 185, "gap_rates": [0.7538461538461538, 0.5323076923076923, 0.3076923076923077, 0.17846153846153845, 0.12615384615384614, 0.1076923076923077, 0.09538461538461539, 0.08, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.06769230769230769, 0.06769230769230769, 0.05846153846153846, 0.05846153846153846, 0.055384615384615386, 0.055384615384615386, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.5876923076923077, 0.055384615384615386, 0.052307692307692305, 0.052307692307692305, 0.04923076923076923, 0.04923076923076923, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.052307692307692305, 0.05846153846153846, 0.052307692307692305, 0.043076923076923075, 0.2923076923076923, 0.12615384615384614, 0.11076923076923077, 0.06153846153846154, 0.05846153846153846, 0.05846153846153846, 0.06153846153846154, 0.19692307692307692, 0.12615384615384614, 0.14461538461538462, 0.16923076923076924, 0.26153846153846155, 0.13538461538461538, 0.30153846153846153, 0.4676923076923077, 0.7169230769230769, 0.8123076923076923, 0.8830769230769231, 0.9046153846153846, 0.9138461538461539, 0.92, 0.9292307692307692, 0.9353846153846154, 0.9384615384615385, 0.9292307692307692, 0.9230769230769231, 0.92, 0.9076923076923077, 0.8892307692307693, 0.8523076923076923, 0.7507692307692307, 0.6276923076923077, 0.3384615384615385, 0.26461538461538464, 0.033846153846153845, 0.04, 0.033846153846153845, 0.03076923076923077, 0.03076923076923077, 0.043076923076923075, 0.046153846153846156, 0.06153846153846154, 0.046153846153846156, 0.033846153846153845, 0.033846153846153845, 0.03076923076923077, 0.03076923076923077, 0.027692307692307693, 0.6707692307692308, 0.3261538461538461, 0.2953846153846154, 0.27692307692307694, 0.27076923076923076, 0.27076923076923076, 0.24923076923076923, 0.24923076923076923, 0.2523076923076923, 0.18461538461538463, 0.5261538461538462, 0.6123076923076923, 0.6492307692307693, 0.6615384615384615, 0.6892307692307692, 0.7292307692307692, 0.9384615384615385, 0.7661538461538462, 0.7107692307692308, 0.6738461538461539, 0.6584615384615384, 0.6307692307692307, 0.5938461538461538, 0.5076923076923077, 0.3476923076923077, 0.37846153846153846, 0.3507692307692308, 0.31076923076923074, 0.2923076923076923, 0.2676923076923077, 0.23692307692307693, 0.2123076923076923, 0.20923076923076922, 0.18153846153846154, 0.18153846153846154, 0.18153846153846154, 0.1753846153846154, 0.1076923076923077, 0.10461538461538461, 0.08615384615384615, 0.06461538461538462, 0.036923076923076927, 0.03076923076923077, 0.033846153846153845, 0.03076923076923077, 0.03076923076923077, 0.036923076923076927, 0.92, 0.9415384615384615, 0.9292307692307692, 0.9107692307692308, 0.26461538461538464, 0.046153846153846156, 0.012307692307692308, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.006153846153846154, 0.006153846153846154, 0.006153846153846154, 0.006153846153846154, 0.006153846153846154, 0.006153846153846154, 0.006153846153846154, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.043076923076923075, 0.29846153846153844, 0.25846153846153846, 0.48923076923076925, 0.5076923076923077, 0.9323076923076923, 0.9384615384615385, 0.9261538461538461, 0.49846153846153846, 0.46153846153846156, 0.052307692307692305, 0.046153846153846156, 0.018461538461538463, 0.018461538461538463, 0.018461538461538463, 0.018461538461538463, 0.018461538461538463, 0.021538461538461538, 0.04, 0.036923076923076927, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.046153846153846156, 0.04923076923076923, 0.055384615384615386, 0.06461538461538462, 0.1076923076923077, 0.15384615384615385, 0.2276923076923077], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Toprim.gap.json b/pfam_gap_rates/Toprim.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8abe1b73e3d3ec0e7ddf8ca6f65439a476c0d49f
--- /dev/null
+++ b/pfam_gap_rates/Toprim.gap.json
@@ -0,0 +1 @@
+{"family": "Toprim", "n_seqs": 5000, "length": 182, "gap_rates": [0.467, 0.0446, 0.028, 0.0274, 0.0268, 0.025, 0.0248, 0.0248, 0.0248, 0.0306, 0.0274, 0.0214, 0.0198, 0.0194, 0.0192, 0.019, 0.0182, 0.0442, 0.0394, 0.7452, 0.7856, 0.7924, 0.7966, 0.7984, 0.9026, 0.9146, 0.9194, 0.9328, 0.9384, 0.9464, 0.9474, 0.9432, 0.937, 0.9302, 0.9184, 0.9132, 0.8836, 0.797, 0.7936, 0.7882, 0.7472, 0.7448, 0.2872, 0.0182, 0.0136, 0.0128, 0.0124, 0.0114, 0.0114, 0.0104, 0.0102, 0.0092, 0.0092, 0.0092, 0.0092, 0.0092, 0.0096, 0.009, 0.0086, 0.0088, 0.5166, 0.5958, 0.6068, 0.6254, 0.8002, 0.8388, 0.8622, 0.8918, 0.9244, 0.9278, 0.9332, 0.9456, 0.929, 0.9264, 0.8956, 0.8878, 0.85, 0.8328, 0.6328, 0.6138, 0.6008, 0.589, 0.1084, 0.0978, 0.1728, 0.157, 0.1552, 0.1546, 0.1442, 0.0398, 0.318, 0.7466, 0.7884, 0.8428, 0.8612, 0.874, 0.8822, 0.8912, 0.9028, 0.8852, 0.8768, 0.8658, 0.8566, 0.819, 0.7628, 0.7174, 0.3138, 0.0406, 0.0426, 0.0422, 0.0414, 0.0416, 0.0418, 0.0436, 0.0442, 0.0398, 0.0394, 0.0248, 0.5524, 0.5662, 0.8216, 0.93, 0.9166, 0.585, 0.5538, 0.5408, 0.0066, 0.0062, 0.0066, 0.0106, 0.006, 0.9102, 0.862, 0.0108, 0.0034, 0.0034, 0.0038, 0.0032, 0.0036, 0.0036, 0.0036, 0.0036, 0.0046, 0.0046, 0.0052, 0.0052, 0.0052, 0.0054, 0.0058, 0.0062, 0.0068, 0.007, 0.007, 0.0074, 0.0076, 0.0076, 0.0082, 0.0218, 0.025, 0.0262, 0.0302, 0.6098, 0.6756, 0.6542, 0.5714, 0.2948, 0.187, 0.1152, 0.1228, 0.139, 0.888, 0.8108, 0.5484, 0.4986, 0.1586, 0.165, 0.1772, 0.1962, 0.2398, 0.3362, 0.4584, 0.717], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Toprim_3.gap.json b/pfam_gap_rates/Toprim_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a8c749f5bf363a048ee9974d29d3e0fdda60339
--- /dev/null
+++ b/pfam_gap_rates/Toprim_3.gap.json
@@ -0,0 +1 @@
+{"family": "Toprim_3", "n_seqs": 372, "length": 118, "gap_rates": [0.1827956989247312, 0.0456989247311828, 0.03225806451612903, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.024193548387096774, 0.024193548387096774, 0.021505376344086023, 0.021505376344086023, 0.016129032258064516, 0.9032258064516129, 0.5295698924731183, 0.043010752688172046, 0.02956989247311828, 0.026881720430107527, 0.010752688172043012, 0.002688172043010753, 0.002688172043010753, 0.010752688172043012, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.0, 0.0, 0.002688172043010753, 0.0, 0.0, 0.0, 0.0, 0.026881720430107527, 0.010752688172043012, 0.002688172043010753, 0.0, 0.0, 0.7016129032258065, 0.8817204301075269, 0.7365591397849462, 0.6827956989247311, 0.0, 0.8091397849462365, 0.005376344086021506, 0.0, 0.002688172043010753, 0.002688172043010753, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4946236559139785, 0.4946236559139785, 0.7473118279569892, 0.8548387096774194, 0.9005376344086021, 0.9274193548387096, 0.8763440860215054, 0.7768817204301075, 0.6693548387096774, 0.005376344086021506, 0.002688172043010753, 0.0, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.0, 0.002688172043010753, 0.008064516129032258, 0.008064516129032258, 0.010752688172043012, 0.010752688172043012, 0.013440860215053764, 0.03225806451612903, 0.19623655913978494, 0.17204301075268819, 0.13172043010752688, 0.12634408602150538, 0.053763440860215055, 0.03225806451612903, 0.03494623655913978, 0.043010752688172046, 0.043010752688172046, 0.026881720430107527, 0.7123655913978495, 0.7983870967741935, 0.8736559139784946, 0.9220430107526881, 0.8333333333333334, 0.7634408602150538, 0.5026881720430108, 0.053763440860215055, 0.09946236559139784, 0.09946236559139784, 0.28225806451612906, 0.8870967741935484, 0.9327956989247311, 0.9301075268817204, 0.8198924731182796, 0.04032258064516129, 0.043010752688172046, 0.043010752688172046, 0.0456989247311828, 0.04838709677419355, 0.07258064516129033, 0.11827956989247312, 0.20430107526881722, 0.30913978494623656, 0.3978494623655914, 0.6021505376344086, 0.8844086021505376], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transgly.gap.json b/pfam_gap_rates/Transgly.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8eaacbde6241a1d4615755e82b533d63dc4b778
--- /dev/null
+++ b/pfam_gap_rates/Transgly.gap.json
@@ -0,0 +1 @@
+{"family": "Transgly", "n_seqs": 5000, "length": 202, "gap_rates": [0.7112, 0.6032, 0.5064, 0.4442, 0.4056, 0.3762, 0.3566, 0.7188, 0.2458, 0.1626, 0.1236, 0.0864, 0.0704, 0.055, 0.0474, 0.0434, 0.0378, 0.0338, 0.0318, 0.03, 0.0274, 0.0266, 0.0264, 0.0246, 0.022, 0.0218, 0.0214, 0.0212, 0.021, 0.0206, 0.0202, 0.0202, 0.02, 0.02, 0.02, 0.0198, 0.0198, 0.0196, 0.0196, 0.0196, 0.0196, 0.0194, 0.0198, 0.0198, 0.0196, 0.0196, 0.0198, 0.021, 0.0236, 0.021, 0.0212, 0.0234, 0.023, 0.0224, 0.0232, 0.0328, 0.2428, 0.9378, 0.9424, 0.9152, 0.095, 0.07, 0.0558, 0.0392, 0.0326, 0.021, 0.0208, 0.021, 0.0202, 0.0192, 0.0188, 0.0188, 0.0186, 0.0184, 0.0178, 0.0178, 0.0182, 0.0184, 0.021, 0.0446, 0.0212, 0.892, 0.9208, 0.936, 0.9474, 0.941, 0.9302, 0.9028, 0.8808, 0.0254, 0.0828, 0.0198, 0.8492, 0.892, 0.9408, 0.9266, 0.859, 0.8354, 0.0196, 0.0196, 0.0202, 0.0202, 0.0196, 0.0194, 0.0188, 0.0186, 0.0184, 0.0184, 0.0176, 0.017, 0.0172, 0.0164, 0.0164, 0.0158, 0.0154, 0.0158, 0.0158, 0.0154, 0.0152, 0.0152, 0.0154, 0.0156, 0.0156, 0.0148, 0.0148, 0.0144, 0.015, 0.0152, 0.0152, 0.0152, 0.015, 0.0152, 0.0148, 0.0148, 0.0168, 0.916, 0.9204, 0.9184, 0.916, 0.0156, 0.0164, 0.0152, 0.015, 0.0148, 0.015, 0.0152, 0.015, 0.015, 0.0152, 0.0146, 0.0148, 0.0148, 0.0152, 0.0154, 0.0154, 0.0168, 0.0172, 0.0174, 0.0176, 0.0176, 0.018, 0.0168, 0.0166, 0.0168, 0.0168, 0.0172, 0.0172, 0.0172, 0.0174, 0.0178, 0.018, 0.0188, 0.0192, 0.02, 0.0202, 0.0238, 0.0242, 0.0558, 0.0574, 0.057, 0.0556, 0.939, 0.0668, 0.925, 0.9402, 0.9028, 0.0672, 0.0726, 0.0764, 0.0796, 0.083, 0.0844, 0.0864, 0.0914, 0.0956, 0.1008, 0.1056, 0.1116, 0.1194, 0.142, 0.174, 0.9342], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Translin.gap.json b/pfam_gap_rates/Translin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc2e4c20da4d9b98981a57b9fffd959f627edd33
--- /dev/null
+++ b/pfam_gap_rates/Translin.gap.json
@@ -0,0 +1 @@
+{"family": "Translin", "n_seqs": 530, "length": 256, "gap_rates": [0.6132075471698113, 0.36981132075471695, 0.20943396226415095, 0.19056603773584907, 0.17358490566037735, 0.16792452830188678, 0.16792452830188678, 0.1660377358490566, 0.15849056603773584, 0.15660377358490565, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1471698113207547, 0.14339622641509434, 0.14339622641509434, 0.14339622641509434, 0.14339622641509434, 0.14150943396226415, 0.1490566037735849, 0.1509433962264151, 0.1509433962264151, 0.1490566037735849, 0.1490566037735849, 0.1509433962264151, 0.15849056603773584, 0.15471698113207547, 0.3584905660377358, 0.4075471698113208, 0.4849056603773585, 0.8075471698113208, 0.6264150943396226, 0.630188679245283, 0.9452830188679245, 0.6037735849056604, 0.47547169811320755, 0.34150943396226413, 0.21320754716981133, 0.19433962264150945, 0.17358490566037735, 0.1830188679245283, 0.27169811320754716, 0.1471698113207547, 0.9245283018867925, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Transpeptidase.gap.json b/pfam_gap_rates/Transpeptidase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..868c2820a8c2e41d452010b3fa74118d1cedfdf1
--- /dev/null
+++ b/pfam_gap_rates/Transpeptidase.gap.json
@@ -0,0 +1 @@
+{"family": "Transpeptidase", "n_seqs": 5000, "length": 382, "gap_rates": [0.5584, 0.2534, 0.1614, 0.114, 0.099, 0.085, 0.0832, 0.0796, 0.0778, 0.0882, 0.07, 0.0686, 0.0676, 0.0672, 0.067, 0.0666, 0.0666, 0.067, 0.067, 0.0718, 0.092, 0.1084, 0.1278, 0.1664, 0.1562, 0.1558, 0.1678, 0.3026, 0.3142, 0.654, 0.6958, 0.7182, 0.7328, 0.757, 0.7726, 0.908, 0.9324, 0.9254, 0.7852, 0.7666, 0.7496, 0.7242, 0.7104, 0.6906, 0.5484, 0.5086, 0.481, 0.4398, 0.3914, 0.3468, 0.256, 0.1154, 0.1032, 0.122, 0.0506, 0.0534, 0.0508, 0.0484, 0.049, 0.0542, 0.0446, 0.042, 0.0424, 0.0424, 0.0422, 0.0422, 0.042, 0.042, 0.0418, 0.0418, 0.9114, 0.0418, 0.0418, 0.042, 0.042, 0.042, 0.0426, 0.0428, 0.2894, 0.0452, 0.0438, 0.0622, 0.045, 0.0422, 0.043, 0.0408, 0.0408, 0.0412, 0.0402, 0.04, 0.044, 0.045, 0.0552, 0.0608, 0.1062, 0.2366, 0.1952, 0.227, 0.828, 0.9494, 0.924, 0.6584, 0.0596, 0.0522, 0.0476, 0.044, 0.0444, 0.0462, 0.0542, 0.1624, 0.8076, 0.8664, 0.7134, 0.5112, 0.409, 0.176, 0.105, 0.071, 0.0658, 0.9028, 0.0362, 0.0354, 0.0356, 0.0352, 0.035, 0.035, 0.035, 0.035, 0.035, 0.0344, 0.0342, 0.0342, 0.0344, 0.0344, 0.0342, 0.0342, 0.0344, 0.0352, 0.9442, 0.0354, 0.91, 0.9254, 0.9346, 0.9332, 0.9174, 0.9086, 0.0348, 0.0404, 0.041, 0.0414, 0.0356, 0.9436, 0.9396, 0.0358, 0.0354, 0.0368, 0.037, 0.0376, 0.0378, 0.0378, 0.0378, 0.0398, 0.041, 0.0404, 0.0424, 0.044, 0.373, 0.3388, 0.3226, 0.2884, 0.2346, 0.2088, 0.177, 0.1422, 0.1092, 0.1048, 0.1034, 0.1102, 0.7248, 0.4314, 0.3484, 0.3146, 0.279, 0.945, 0.901, 0.2782, 0.2624, 0.6386, 0.7618, 0.8424, 0.8644, 0.8722, 0.8562, 0.82, 0.7266, 0.5912, 0.2512, 0.241, 0.2228, 0.2308, 0.4248, 0.382, 0.3432, 0.2994, 0.2628, 0.2444, 0.2226, 0.6608, 0.7498, 0.4382, 0.064, 0.0454, 0.0418, 0.0392, 0.0394, 0.0374, 0.0354, 0.0336, 0.0338, 0.0338, 0.0336, 0.0338, 0.034, 0.0344, 0.0348, 0.0346, 0.0344, 0.0974, 0.0594, 0.0592, 0.0586, 0.0584, 0.059, 0.0594, 0.059, 0.0592, 0.0598, 0.1374, 0.1798, 0.1836, 0.1934, 0.1916, 0.2204, 0.2324, 0.2374, 0.7374, 0.8892, 0.9208, 0.938, 0.95, 0.9256, 0.9048, 0.861, 0.5268, 0.2382, 0.193, 0.1202, 0.104, 0.0926, 0.0848, 0.083, 0.0822, 0.0804, 0.0566, 0.052, 0.0516, 0.0508, 0.049, 0.049, 0.0494, 0.0496, 0.0488, 0.0488, 0.0486, 0.0488, 0.0484, 0.0486, 0.049, 0.049, 0.0484, 0.0488, 0.0486, 0.049, 0.0494, 0.0498, 0.0496, 0.0498, 0.2886, 0.2204, 0.1418, 0.1332, 0.1254, 0.1214, 0.7724, 0.9486, 0.877, 0.5212, 0.3376, 0.1174, 0.0976, 0.0874, 0.0552, 0.9416, 0.9214, 0.0534, 0.052, 0.0516, 0.0516, 0.052, 0.052, 0.052, 0.0518, 0.0528, 0.057, 0.0624, 0.0664, 0.0734, 0.317, 0.4102, 0.421, 0.3234, 0.4432, 0.6006, 0.6188, 0.622, 0.6804, 0.6648, 0.6316, 0.8892, 0.9288, 0.944, 0.9478, 0.9376, 0.9132, 0.8742, 0.5056, 0.2094, 0.0984, 0.0982, 0.098, 0.099, 0.1018, 0.1082, 0.1212, 0.1708, 0.9102, 0.3836, 0.3614, 0.3196, 0.3152, 0.2188, 0.2334, 0.238, 0.2432, 0.25, 0.2574, 0.263, 0.2706, 0.2766, 0.2802, 0.2866, 0.722, 0.8976, 0.8384, 0.621, 0.5804, 0.5476, 0.3848, 0.357, 0.3628, 0.3708, 0.3782, 0.385, 0.3958, 0.4038, 0.414, 0.4272, 0.4434, 0.4648, 0.4876, 0.5678, 0.8532], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transposase_22.gap.json b/pfam_gap_rates/Transposase_22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9099f226d0773dc56793de5675ae2d18f8be53bb
--- /dev/null
+++ b/pfam_gap_rates/Transposase_22.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Transthyretin.gap.json b/pfam_gap_rates/Transthyretin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..771452d7f2ff5ef019a40226f1e22374e43cc0b5
--- /dev/null
+++ b/pfam_gap_rates/Transthyretin.gap.json
@@ -0,0 +1 @@
+{"family": "Transthyretin", "n_seqs": 726, "length": 147, "gap_rates": [0.05371900826446281, 0.05096418732782369, 0.026170798898071626, 0.024793388429752067, 0.023415977961432508, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.01928374655647383, 0.01790633608815427, 0.01790633608815427, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01790633608815427, 0.01790633608815427, 0.01790633608815427, 0.01790633608815427, 0.01790633608815427, 0.023415977961432508, 0.05234159779614325, 0.05509641873278237, 0.09779614325068871, 0.15426997245179064, 0.7369146005509641, 0.8278236914600551, 0.8608815426997245, 0.9077134986225895, 0.9228650137741047, 0.9380165289256198, 0.9325068870523416, 0.9159779614325069, 0.8815426997245179, 0.8471074380165289, 0.8057851239669421, 0.5619834710743802, 0.13085399449035812, 0.06060606060606061, 0.02203856749311295, 0.01790633608815427, 0.015151515151515152, 0.013774104683195593, 0.013774104683195593, 0.013774104683195593, 0.011019283746556474, 0.011019283746556474, 0.011019283746556474, 0.011019283746556474, 0.011019283746556474, 0.011019283746556474, 0.011019283746556474, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.015151515151515152, 0.03168044077134986, 0.3402203856749311, 0.8774104683195593, 0.8842975206611571, 0.8898071625344353, 0.8980716253443526, 0.9132231404958677, 0.9173553719008265, 0.9269972451790633, 0.940771349862259, 0.9449035812672176, 0.9366391184573003, 0.918732782369146, 0.9159779614325069, 0.9022038567493113, 0.8939393939393939, 0.8884297520661157, 0.8801652892561983, 0.8553719008264463, 0.20798898071625344, 0.08402203856749312, 0.05922865013774105, 0.03305785123966942, 0.028925619834710745, 0.028925619834710745, 0.009641873278236915, 0.009641873278236915, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.009641873278236915, 0.009641873278236915, 0.009641873278236915, 0.008264462809917356, 0.013774104683195593, 0.01790633608815427, 0.01928374655647383, 0.02066115702479339, 0.12947658402203857, 0.1418732782369146, 0.10055096418732783, 0.06473829201101929, 0.012396694214876033, 0.59366391184573, 0.6253443526170799, 0.9449035812672176, 0.931129476584022, 0.6074380165289256, 0.5578512396694215, 0.009641873278236915, 0.009641873278236915, 0.009641873278236915, 0.009641873278236915, 0.009641873278236915, 0.009641873278236915, 0.008264462809917356, 0.011019283746556474, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.31129476584022037, 0.02066115702479339, 0.015151515151515152, 0.8953168044077136, 0.9449035812672176, 0.8829201101928374, 0.015151515151515152, 0.01790633608815427, 0.01790633608815427, 0.01928374655647383, 0.02066115702479339, 0.02203856749311295, 0.02203856749311295, 0.02203856749311295, 0.02203856749311295, 0.02203856749311295, 0.023415977961432508, 0.023415977961432508, 0.023415977961432508, 0.023415977961432508, 0.023415977961432508, 0.024793388429752067, 0.049586776859504134, 0.05509641873278237, 0.06060606060606061], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TrbC.gap.json b/pfam_gap_rates/TrbC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73f9cc515b548d2a8843d577d975ee182c008b67
--- /dev/null
+++ b/pfam_gap_rates/TrbC.gap.json
@@ -0,0 +1 @@
+{"family": "TrbC", "n_seqs": 392, "length": 111, "gap_rates": [0.9438775510204082, 0.9005102040816326, 0.798469387755102, 0.701530612244898, 0.6096938775510204, 0.5, 0.3852040816326531, 0.33418367346938777, 0.25255102040816324, 0.22193877551020408, 0.17857142857142858, 0.14540816326530612, 0.11224489795918367, 0.10714285714285714, 0.09693877551020408, 0.08928571428571429, 0.08163265306122448, 0.07908163265306123, 0.07397959183673469, 0.06887755102040816, 0.06887755102040816, 0.0663265306122449, 0.06377551020408163, 0.06377551020408163, 0.06377551020408163, 0.061224489795918366, 0.061224489795918366, 0.07908163265306123, 0.08418367346938775, 0.11224489795918367, 0.1989795918367347, 0.4897959183673469, 0.7448979591836735, 0.8367346938775511, 0.8979591836734694, 0.9362244897959183, 0.9260204081632653, 0.8724489795918368, 0.8010204081632653, 0.6479591836734694, 0.04336734693877551, 0.02806122448979592, 0.025510204081632654, 0.02295918367346939, 0.017857142857142856, 0.01020408163265306, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.288265306122449, 0.00510204081632653, 0.002551020408163265, 0.002551020408163265, 0.00510204081632653, 0.002551020408163265, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002551020408163265, 0.002551020408163265, 0.002551020408163265, 0.002551020408163265, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.015306122448979591, 0.007653061224489796, 0.4260204081632653, 0.8290816326530612, 0.9132653061224489, 0.9336734693877551, 0.8775510204081632, 0.7346938775510204, 0.4030612244897959, 0.007653061224489796, 0.007653061224489796, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.015306122448979591, 0.02040816326530612, 0.03316326530612245, 0.04081632653061224, 0.04591836734693878, 0.061224489795918366, 0.08163265306122448, 0.1556122448979592, 0.5586734693877551], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trigger_C.gap.json b/pfam_gap_rates/Trigger_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3800325f012d707543255d7a213f37e3abf6d951
--- /dev/null
+++ b/pfam_gap_rates/Trigger_C.gap.json
@@ -0,0 +1 @@
+{"family": "Trigger_C", "n_seqs": 2246, "length": 167, "gap_rates": [0.39269813000890474, 0.18165627782724844, 0.11086375779162956, 0.0854853072128228, 0.07836153161175423, 0.07702582368655388, 0.07569011576135352, 0.07435440783615316, 0.07079252003561888, 0.06945681211041853, 0.06634016028495103, 0.06589492430988424, 0.06589492430988424, 0.060552092609082814, 0.05609973285841496, 0.05075690115761353, 0.0458593054318789, 0.040516473731077474, 0.04007123775601069, 0.039180765805877114, 0.037399821905609976, 0.034728406055209264, 0.03294746215494212, 0.03250222617987533, 0.030721282279608193, 0.02894033837934105, 0.02626892252894034, 0.025378450578806767, 0.02404274265360641, 0.021816562778272486, 0.019590382902938557, 0.019590382902938557, 0.020480854853072127, 0.021816562778272486, 0.020926090828138913, 0.0213713268032057, 0.019590382902938557, 0.01914514692787177, 0.018699910952804988, 0.8802315227070348, 0.018699910952804988, 0.018699910952804988, 0.018699910952804988, 0.0182546749777382, 0.0182546749777382, 0.0182546749777382, 0.018699910952804988, 0.018699910952804988, 0.020035618878005344, 0.022707034728406055, 0.02226179875333927, 0.02315227070347284, 0.02315227070347284, 0.0213713268032057, 0.0213713268032057, 0.020926090828138913, 0.021816562778272486, 0.0213713268032057, 0.0792520035618878, 0.053428317008014245, 0.05120213713268032, 0.048975957257346395, 0.21504897595725736, 0.19768477292965272, 0.18744434550311664, 0.13357079252003562, 0.13000890471950133, 0.09216384683882457, 0.09216384683882457, 0.0881567230632235, 0.09661620658949244, 0.3072128227960819, 0.3490650044523598, 0.358860195903829, 0.342386464826358, 0.25066785396260016, 0.21994657168299198, 0.1918967052537845, 0.9390026714158504, 0.8851291184327693, 0.06233303650934995, 0.02894033837934105, 0.020035618878005344, 0.015583259127337488, 0.011130899376669634, 0.01068566340160285, 0.010240427426536063, 0.009795191451469279, 0.009349955476402494, 0.011130899376669634, 0.010240427426536063, 0.012466607301869992, 0.008459483526268923, 0.010240427426536063, 0.008014247551202136, 0.008459483526268923, 0.008459483526268923, 0.008459483526268923, 0.008459483526268923, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.008459483526268923, 0.008459483526268923, 0.008459483526268923, 0.008459483526268923, 0.009349955476402494, 0.010240427426536063, 0.011130899376669634, 0.011130899376669634, 0.009349955476402494, 0.009795191451469279, 0.01157613535173642, 0.012021371326803205, 0.012021371326803205, 0.012911843276936777, 0.012466607301869992, 0.013357079252003561, 0.016918967052537846, 0.017809439002671415, 0.021816562778272486, 0.023597506678539625, 0.02404274265360641, 0.025823686553873553, 0.030721282279608193, 0.03250222617987533, 0.034728406055209264, 0.037399821905609976, 0.06188780053428317, 0.06322350845948353, 0.058771148708815675, 0.29073909171861084, 0.918967052537845, 0.11353517364203028, 0.10596616206589493, 0.085040071237756, 0.06544968833481746, 0.07079252003561888, 0.06144256455921639, 0.06634016028495103, 0.06723063223508459, 0.06767586821015138, 0.3089937666963491, 0.22751558325912732, 0.21593944790739092, 0.18121104185218165, 0.09483526268922529, 0.10596616206589493, 0.10240427426536064, 0.7065894924309885, 0.10997328584149599, 0.10106856634016029, 0.1006233303650935, 0.10329474621549421, 0.10418521816562779, 0.10730186999109528, 0.11041852181656278, 0.11398040961709706, 0.11798753339269813, 0.12154942119323241, 0.12511130899376668, 0.13178984861976847, 0.14514692787177205, 0.163846838824577, 0.1856634016028495, 0.3089937666963491, 0.7377560106856634], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TrkA_C.gap.json b/pfam_gap_rates/TrkA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..beb12e2ac4151ec5bb3830c00799f2e37b0051ac
--- /dev/null
+++ b/pfam_gap_rates/TrkA_C.gap.json
@@ -0,0 +1 @@
+{"family": "TrkA_C", "n_seqs": 5000, "length": 77, "gap_rates": [0.7654, 0.5318, 0.3604, 0.2466, 0.2074, 0.168, 0.1626, 0.1708, 0.096, 0.0656, 0.0564, 0.0316, 0.0236, 0.0148, 0.0106, 0.0046, 0.0032, 0.0024, 0.0022, 0.1276, 0.1266, 0.0052, 0.0066, 0.0058, 0.2748, 0.902, 0.9188, 0.3472, 0.0022, 0.0004, 0.0, 0.0002, 0.0, 0.0, 0.0, 0.9484, 0.0006, 0.0012, 0.0022, 0.9072, 0.5938, 0.014, 0.0016, 0.0004, 0.0002, 0.0004, 0.0002, 0.0008, 0.0008, 0.918, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.0012, 0.0016, 0.0074, 0.02, 0.0336, 0.0442, 0.063, 0.0804, 0.0992, 0.1206, 0.1438, 0.1654, 0.1968, 0.2652, 0.343, 0.4704, 0.6256, 0.9066], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trns_repr_metal.gap.json b/pfam_gap_rates/Trns_repr_metal.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9d22697a5adff061211f25a64947db028a25c6d
--- /dev/null
+++ b/pfam_gap_rates/Trns_repr_metal.gap.json
@@ -0,0 +1 @@
+{"family": "Trns_repr_metal", "n_seqs": 1983, "length": 88, "gap_rates": [0.7670196671709532, 0.32476046394351993, 0.13918305597579425, 0.07463439233484619, 0.04135148764498235, 0.03227433182047403, 0.02924861321230459, 0.02773575390821987, 0.026727181038830056, 0.025214321734745335, 0.024205748865355523, 0.02319717599596571, 0.022188603126575897, 0.022188603126575897, 0.022188603126575897, 0.019162884518406455, 0.019162884518406455, 0.019162884518406455, 0.018658598083711547, 0.018154311649016642, 0.018154311649016642, 0.005547150781643974, 0.005042864346949067, 0.0045385779122541605, 0.004034291477559254, 0.0045385779122541605, 0.005042864346949067, 0.005042864346949067, 0.005042864346949067, 0.005547150781643974, 0.005042864346949067, 0.005042864346949067, 0.0035300050428643467, 0.0030257186081694403, 0.0025214321734745334, 0.0025214321734745334, 0.002017145738779627, 0.002017145738779627, 0.0025214321734745334, 0.0025214321734745334, 0.002017145738779627, 0.0015128593040847202, 0.002017145738779627, 0.002017145738779627, 0.002017145738779627, 0.0030257186081694403, 0.0030257186081694403, 0.0030257186081694403, 0.0030257186081694403, 0.0030257186081694403, 0.0030257186081694403, 0.0035300050428643467, 0.0045385779122541605, 0.005042864346949067, 0.0070600100857286935, 0.008068582955118508, 0.009581442259203227, 0.011094301563287948, 0.011094301563287948, 0.011598587997982855, 0.8935955622793746, 0.9304084720121029, 0.9097327281896117, 0.8850226928895613, 0.015128593040847202, 0.06606152294503277, 0.06908724155320221, 0.09379727685325265, 0.033787191124558746, 0.12203731719616742, 0.38981341401916286, 0.7453353504790721, 0.8981341401916288, 0.6359051941502774, 0.16137165910237014, 0.09480584972264246, 0.03681290973272819, 0.0453857791225416, 0.048411497730711045, 0.05143721633888049, 0.05597579425113464, 0.07110438729198185, 0.08774583963691376, 0.1053958648512355, 0.14120020171457387, 0.22390317700453857, 0.3817448310640444, 0.7392839132627332], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TrpBP.gap.json b/pfam_gap_rates/TrpBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c25928b55a25f50029f06e538c6950fbd76d77d
--- /dev/null
+++ b/pfam_gap_rates/TrpBP.gap.json
@@ -0,0 +1 @@
+{"family": "TrpBP", "n_seqs": 136, "length": 68, "gap_rates": [0.3235294117647059, 0.022058823529411766, 0.014705882352941176, 0.014705882352941176, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.0, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.014705882352941176, 0.04411764705882353, 0.375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trp_repressor.gap.json b/pfam_gap_rates/Trp_repressor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fed54a5e8d536a940e95d4a5276d518551033d6f
--- /dev/null
+++ b/pfam_gap_rates/Trp_repressor.gap.json
@@ -0,0 +1 @@
+{"family": "Trp_repressor", "n_seqs": 861, "length": 86, "gap_rates": [0.59465737514518, 0.3983739837398374, 0.2032520325203252, 0.08943089430894309, 0.04878048780487805, 0.047619047619047616, 0.0429732868757259, 0.03832752613240418, 0.03832752613240418, 0.03716608594657375, 0.03484320557491289, 0.032520325203252036, 0.0313588850174216, 0.029036004645760744, 0.026713124274099883, 0.026713124274099883, 0.024390243902439025, 0.022067363530778164, 0.018583042973286876, 0.015098722415795587, 0.015098722415795587, 0.013937282229965157, 0.012775842044134728, 0.012775842044134728, 0.012775842044134728, 0.011614401858304297, 0.011614401858304297, 0.011614401858304297, 0.011614401858304297, 0.011614401858304297, 0.011614401858304297, 0.011614401858304297, 0.011614401858304297, 0.005807200929152149, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.006968641114982578, 0.005807200929152149, 0.004645760743321719, 0.005807200929152149, 0.9012775842044135, 0.005807200929152149, 0.004645760743321719, 0.012775842044134728, 0.012775842044134728, 0.006968641114982578, 0.006968641114982578, 0.004645760743321719, 0.004645760743321719, 0.003484320557491289, 0.004645760743321719, 0.004645760743321719, 0.004645760743321719, 0.004645760743321719, 0.004645760743321719, 0.004645760743321719, 0.005807200929152149, 0.005807200929152149, 0.005807200929152149, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.011614401858304297, 0.012775842044134728, 0.018583042973286876, 0.022067363530778164, 0.027874564459930314, 0.030197444831591175, 0.032520325203252036, 0.03484320557491289, 0.08826945412311266, 0.09407665505226481, 0.09059233449477352, 0.1207897793263647, 0.11846689895470383, 0.1254355400696864, 0.13356562137049943, 0.1440185830429733, 0.1521486643437863, 0.1672473867595819, 0.20209059233449478, 0.2613240418118467, 0.5156794425087108], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TruB-C_2.gap.json b/pfam_gap_rates/TruB-C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6539f9651c301e01810ddfbd06e8b5e3d02ab50f
--- /dev/null
+++ b/pfam_gap_rates/TruB-C_2.gap.json
@@ -0,0 +1 @@
+{"family": "TruB-C_2", "n_seqs": 453, "length": 67, "gap_rates": [0.25165562913907286, 0.1434878587196468, 0.06181015452538632, 0.046357615894039736, 0.03532008830022075, 0.024282560706401765, 0.017660044150110375, 0.013245033112582781, 0.011037527593818985, 0.006622516556291391, 0.002207505518763797, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3818984547461369, 0.16556291390728478, 0.7306843267108167, 0.8719646799116998, 0.9381898454746137, 0.9161147902869757, 0.8123620309050773, 0.6997792494481236, 0.2141280353200883, 0.0706401766004415, 0.013245033112582781, 0.0, 0.002207505518763797, 0.006622516556291391, 0.004415011037527594, 0.004415011037527594, 0.7770419426048565, 0.0, 0.0, 0.0, 0.0, 0.008830022075055188, 0.6997792494481236, 0.2119205298013245, 0.002207505518763797, 0.006622516556291391, 0.004415011037527594, 0.004415011037527594, 0.004415011037527594, 0.004415011037527594, 0.004415011037527594, 0.004415011037527594, 0.011037527593818985, 0.011037527593818985, 0.019867549668874173, 0.024282560706401765, 0.3995584988962472, 0.052980132450331126, 0.06622516556291391, 0.9271523178807947, 0.08830022075055188, 0.09492273730684327, 0.10596026490066225, 0.12141280353200883, 0.141280353200883, 0.16114790286975716, 0.22737306843267108, 0.3708609271523179], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TruB_N.gap.json b/pfam_gap_rates/TruB_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7f7cae4b86b3145446e3e2e43ed10ac40407e11
--- /dev/null
+++ b/pfam_gap_rates/TruB_N.gap.json
@@ -0,0 +1 @@
+{"family": "TruB_N", "n_seqs": 2742, "length": 159, "gap_rates": [0.29321663019693656, 0.2363238512035011, 0.20605397520058352, 0.18052516411378555, 0.14770240700218817, 0.11560904449307075, 0.07403355215171407, 0.0525164113785558, 0.047045951859956234, 0.044857768052516414, 0.04412837345003647, 0.04412837345003647, 0.043034281546316555, 0.0412107950401167, 0.039022611232676876, 0.038293216630196934, 0.034281546316557256, 0.03099927060539752, 0.028446389496717725, 0.02698760029175784, 0.02698760029175784, 0.0262582056892779, 0.024799416484318017, 0.023705324580598104, 0.023705324580598104, 0.023705324580598104, 0.023705324580598104, 0.024434719183078046, 0.023705324580598104, 0.023340627279358133, 0.024070021881838075, 0.023705324580598104, 0.023705324580598104, 0.024070021881838075, 0.024070021881838075, 0.022975929978118162, 0.022975929978118162, 0.023340627279358133, 0.02516411378555799, 0.02954048140043764, 0.04048140043763676, 0.02261123267687819, 0.023705324580598104, 0.023705324580598104, 0.023705324580598104, 0.022975929978118162, 0.022975929978118162, 0.02261123267687819, 0.02261123267687819, 0.02261123267687819, 0.023705324580598104, 0.02735229759299781, 0.032458059810357404, 0.03865791393143691, 0.041940189642596645, 0.049963530269876, 0.056528081692195475, 0.09226841721371262, 0.17286652078774617, 0.1739606126914661, 0.17177242888402625, 0.17177242888402625, 0.17104303428154632, 0.17213712618526622, 0.175054704595186, 0.1765134938001459, 0.936542669584245, 0.8512035010940919, 0.40007293946024797, 0.2275711159737418, 0.1812545587162655, 0.17541940189642596, 0.17323121808898614, 0.17177242888402625, 0.1673960612691466, 0.1586433260393873, 0.09846827133479212, 0.047045951859956234, 0.0412107950401167, 0.04011670313639679, 0.03792851932895697, 0.03792851932895697, 0.038293216630196934, 0.03865791393143691, 0.03938730853391685, 0.03938730853391685, 0.040846097738876735, 0.040846097738876735, 0.040846097738876735, 0.04048140043763676, 0.04048140043763676, 0.04011670313639679, 0.04011670313639679, 0.04011670313639679, 0.04011670313639679, 0.03975200583515682, 0.04048140043763676, 0.04157549234135667, 0.04266958424507659, 0.04266958424507659, 0.041940189642596645, 0.17432530999270604, 0.17469000729394601, 0.17797228300510576, 0.17797228300510576, 0.17833698030634573, 0.17906637490882568, 0.17906637490882568, 0.17943107221006566, 0.17906637490882568, 0.17943107221006566, 0.1797957695113056, 0.18016046681254558, 0.18016046681254558, 0.18016046681254558, 0.18016046681254558, 0.18016046681254558, 0.18088986141502553, 0.049598832968636035, 0.04814004376367615, 0.047775346462436176, 0.04814004376367615, 0.04886943836615609, 0.049598832968636035, 0.049963530269876, 0.049963530269876, 0.05324580598103574, 0.05105762217359591, 0.05105762217359591, 0.05215171407731583, 0.0525164113785558, 0.055433989788475566, 0.060175054704595186, 0.06819839533187455, 0.07439824945295405, 0.08533916849015317, 0.09117432530999271, 0.6013858497447119, 0.8081692195477753, 0.8967906637490882, 0.9467541940189642, 0.9270605397520059, 0.8803792851932896, 0.7724288840262582, 0.5364697301239971, 0.11269146608315099, 0.11524434719183078, 0.1163384390955507, 0.11706783369803063, 0.11852662290299051, 0.12071480671043035, 0.12107950401167031, 0.12217359591539023, 0.12654996353026987, 0.12910284463894967, 0.13202042304886943, 0.13420860685630925, 0.14113785557986872, 0.1535375638220277], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TrwB_AAD_bind.gap.json b/pfam_gap_rates/TrwB_AAD_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..765f1b7700422caef9955307018c73ee2e45eff1
--- /dev/null
+++ b/pfam_gap_rates/TrwB_AAD_bind.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tti2.gap.json b/pfam_gap_rates/Tti2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..beda49dd8c03b2d82131213bace9f1b4f0fa6b46
--- /dev/null
+++ b/pfam_gap_rates/Tti2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tup_N.gap.json b/pfam_gap_rates/Tup_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6437f80cfa391bd2e118c96197dcd828b6caa65
--- /dev/null
+++ b/pfam_gap_rates/Tup_N.gap.json
@@ -0,0 +1 @@
+{"family": "Tup_N", "n_seqs": 165, "length": 77, "gap_rates": [0.11515151515151516, 0.09696969696969697, 0.09090909090909091, 0.08484848484848485, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.4121212121212121, 0.4121212121212121, 0.41818181818181815, 0.42424242424242425, 0.42424242424242425, 0.42424242424242425, 0.42424242424242425, 0.06666666666666667, 0.07272727272727272, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06060606060606061, 0.05454545454545454, 0.06666666666666667, 0.06060606060606061, 0.04242424242424243, 0.04242424242424243, 0.03636363636363636, 0.04242424242424243, 0.03636363636363636, 0.03636363636363636, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.030303030303030304, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.04242424242424243, 0.07272727272727272, 0.09696969696969697, 0.1696969696969697, 0.4121212121212121, 0.9090909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tyr_Deacylase.gap.json b/pfam_gap_rates/Tyr_Deacylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b825cc88c4f2b203b253c99859b92b9f5d60999c
--- /dev/null
+++ b/pfam_gap_rates/Tyr_Deacylase.gap.json
@@ -0,0 +1 @@
+{"family": "Tyr_Deacylase", "n_seqs": 1884, "length": 148, "gap_rates": [0.1942675159235669, 0.1029723991507431, 0.052547770700636945, 0.04883227176220807, 0.04883227176220807, 0.04777070063694268, 0.045647558386411886, 0.042993630573248405, 0.041401273885350316, 0.041401273885350316, 0.040339702760084924, 0.03980891719745223, 0.03662420382165605, 0.03503184713375796, 0.036093418259023353, 0.04087048832271762, 0.037154989384288746, 0.03662420382165605, 0.03397027600849257, 0.03184713375796178, 0.027600849256900213, 0.027600849256900213, 0.9256900212314225, 0.02653927813163482, 0.02653927813163482, 0.02653927813163482, 0.02653927813163482, 0.022823779193205943, 0.022292993630573247, 0.022823779193205943, 0.022823779193205943, 0.022823779193205943, 0.02176220806794055, 0.02176220806794055, 0.020169851380042462, 0.020169851380042462, 0.020169851380042462, 0.020700636942675158, 0.020169851380042462, 0.02176220806794055, 0.020700636942675158, 0.020169851380042462, 0.019639065817409766, 0.020169851380042462, 0.016985138004246284, 0.015392781316348195, 0.01592356687898089, 0.016985138004246284, 0.016985138004246284, 0.016985138004246284, 0.016985138004246284, 0.016985138004246284, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.015392781316348195, 0.01592356687898089, 0.10509554140127389, 0.10244161358811041, 0.10084925690021232, 0.09447983014861996, 0.940552016985138, 0.8901273885350318, 0.10191082802547771, 0.02335456475583864, 0.016985138004246284, 0.016985138004246284, 0.016985138004246284, 0.018577494692144373, 0.016454352441613588, 0.016454352441613588, 0.014331210191082803, 0.015392781316348195, 0.01592356687898089, 0.015392781316348195, 0.015392781316348195, 0.014331210191082803, 0.015392781316348195, 0.014861995753715499, 0.012738853503184714, 0.012738853503184714, 0.014331210191082803, 0.014861995753715499, 0.014331210191082803, 0.014331210191082803, 0.014861995753715499, 0.1040339702760085, 0.03768577494692144, 0.015392781316348195, 0.016985138004246284, 0.01592356687898089, 0.013800424628450107, 0.01326963906581741, 0.01326963906581741, 0.01326963906581741, 0.01326963906581741, 0.01326963906581741, 0.014331210191082803, 0.014331210191082803, 0.015392781316348195, 0.015392781316348195, 0.014861995753715499, 0.014861995753715499, 0.014861995753715499, 0.013800424628450107, 0.014861995753715499, 0.014861995753715499, 0.014861995753715499, 0.014861995753715499, 0.014861995753715499, 0.015392781316348195, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.016454352441613588, 0.016454352441613588, 0.016454352441613588, 0.01910828025477707, 0.6008492569002123, 0.7144373673036093, 0.07430997876857749, 0.04723991507430998, 0.15233545647558386, 0.024946921443736732, 0.022292993630573247, 0.02176220806794055, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022823779193205943, 0.024416135881104035, 0.024416135881104035, 0.024946921443736732, 0.024946921443736732, 0.024946921443736732, 0.027070063694267517, 0.027070063694267517, 0.027600849256900213, 0.027600849256900213, 0.028662420382165606, 0.028662420382165606, 0.030254777070063694, 0.03078556263269639, 0.03556263269639066, 0.03980891719745223, 0.0440552016985138, 0.07112526539278131, 0.18630573248407642], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UAA.gap.json b/pfam_gap_rates/UAA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..817a4be66ea455812e857cdb2b79de1f9e37a2b8
--- /dev/null
+++ b/pfam_gap_rates/UAA.gap.json
@@ -0,0 +1 @@
+{"family": "UAA", "n_seqs": 1183, "length": 374, "gap_rates": [0.8884192730346576, 0.6475063398140322, 0.46830092983939137, 0.39644970414201186, 0.36855452240067627, 0.3516483516483517, 0.34657650042265425, 0.3355874894336433, 0.32882502113271345, 0.3220625528317836, 0.31614539306847, 0.3136094674556213, 0.3144547759932375, 0.31022823330515636, 0.30684699915469144, 0.3043110735418428, 0.30092983939137785, 0.30008453085376163, 0.294167371090448, 0.29163144547759934, 0.28994082840236685, 0.28994082840236685, 0.2890955198647506, 0.2882502113271344, 0.28317836010143704, 0.305156382079459, 0.30346576500422656, 0.3026204564666103, 0.8841927303465765, 0.3060016906170752, 0.30092983939137785, 0.5705832628909552, 0.2696534234995773, 0.643279797125951, 0.6534234995773457, 0.672865595942519, 0.7810650887573964, 0.9061707523245984, 0.9425190194420964, 0.819949281487743, 0.7497886728655959, 0.6635672020287405, 0.6483516483516484, 0.6398985629754861, 0.26204564666103125, 0.2569737954353339, 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\ No newline at end of file
diff --git a/pfam_gap_rates/UB2H.gap.json b/pfam_gap_rates/UB2H.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cec3f78d06c97a86cebab4730b787c44a458bdf9
--- /dev/null
+++ b/pfam_gap_rates/UB2H.gap.json
@@ -0,0 +1 @@
+{"family": "UB2H", "n_seqs": 179, "length": 86, "gap_rates": [0.1787709497206704, 0.0782122905027933, 0.03910614525139665, 0.03910614525139665, 0.0111731843575419, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.9441340782122905, 0.0670391061452514, 0.0111731843575419, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0111731843575419, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0111731843575419, 0.00558659217877095, 0.01675977653631285, 0.0446927374301676, 0.0782122905027933, 0.0782122905027933, 0.27932960893854747, 0.11173184357541899, 0.1564245810055866, 0.11731843575418995, 0.10614525139664804, 0.12290502793296089, 0.12849162011173185, 0.1340782122905028, 0.15083798882681565, 0.2681564245810056], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UBD.gap.json b/pfam_gap_rates/UBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4b09a9733a875ecb3b117a2a3c99a243f9e6150
--- /dev/null
+++ b/pfam_gap_rates/UBD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UCH_1.gap.json b/pfam_gap_rates/UCH_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2ebd47b6fa0fb0977682097df0193d68ecae6ff
--- /dev/null
+++ b/pfam_gap_rates/UCH_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UME.gap.json b/pfam_gap_rates/UME.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4c8c162e95630c084616b7734ee11357bb65749
--- /dev/null
+++ b/pfam_gap_rates/UME.gap.json
@@ -0,0 +1 @@
+{"family": "UME", "n_seqs": 231, "length": 109, "gap_rates": [0.30735930735930733, 0.12554112554112554, 0.1038961038961039, 0.09523809523809523, 0.08225108225108226, 0.0735930735930736, 0.0735930735930736, 0.06926406926406926, 0.06493506493506493, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.05194805194805195, 0.2510822510822511, 0.24242424242424243, 0.08658008658008658, 0.09090909090909091, 0.09523809523809523, 0.21212121212121213, 0.4199134199134199, 0.9177489177489178, 0.12987012987012986, 0.09523809523809523, 0.05194805194805195, 0.04329004329004329, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.021645021645021644, 0.021645021645021644, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.021645021645021644, 0.017316017316017316, 0.7142857142857143, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.03896103896103896, 0.047619047619047616, 0.8874458874458875, 0.8051948051948052, 0.0735930735930736, 0.017316017316017316, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.008658008658008658, 0.008658008658008658, 0.8787878787878788, 0.8831168831168831, 0.8744588744588745, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.030303030303030304, 0.03463203463203463, 0.03463203463203463, 0.03463203463203463, 0.04329004329004329, 0.047619047619047616, 0.05627705627705628, 0.06060606060606061, 0.0735930735930736, 0.1038961038961039, 0.19480519480519481, 0.5194805194805194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UMP1.gap.json b/pfam_gap_rates/UMP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e308acd7e5539348458543fcdc2ffb597462ad63
--- /dev/null
+++ b/pfam_gap_rates/UMP1.gap.json
@@ -0,0 +1 @@
+{"family": "UMP1", "n_seqs": 320, "length": 137, "gap_rates": [0.803125, 0.75, 0.609375, 0.484375, 0.403125, 0.35625, 0.325, 0.325, 0.315625, 0.3, 0.296875, 0.296875, 0.834375, 0.95, 0.81875, 0.28125, 0.29375, 0.94375, 0.865625, 0.28125, 0.28125, 0.278125, 0.265625, 0.25625, 0.2125, 0.825, 0.8875, 0.909375, 0.93125, 0.89375, 0.859375, 0.815625, 0.19375, 0.1625, 0.146875, 0.140625, 0.134375, 0.125, 0.11875, 0.11875, 0.115625, 0.115625, 0.115625, 0.1125, 0.1125, 0.1125, 0.1125, 0.121875, 0.121875, 0.10625, 0.0875, 0.0875, 0.078125, 0.078125, 0.05625, 0.04375, 0.03125, 0.03125, 0.028125, 0.028125, 0.028125, 0.028125, 0.028125, 0.025, 0.025, 0.021875, 0.021875, 0.021875, 0.021875, 0.021875, 0.021875, 0.015625, 0.0125, 0.0125, 0.0125, 0.0125, 0.009375, 0.009375, 0.01875, 0.053125, 0.925, 0.05, 0.059375, 0.059375, 0.040625, 0.040625, 0.503125, 0.06875, 0.053125, 0.0625, 0.04375, 0.81875, 0.890625, 0.75625, 0.04375, 0.040625, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.046875, 0.946875, 0.05, 0.128125, 0.35, 0.146875, 0.146875, 0.1375, 0.159375, 0.171875, 0.178125, 0.175, 0.78125, 0.7, 0.178125, 0.178125, 0.178125, 0.1875, 0.190625, 0.196875, 0.203125, 0.20625, 0.246875, 0.43125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0020.gap.json b/pfam_gap_rates/UPF0020.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5cec6c2957262ed31668f2eba125f3868d12268a
--- /dev/null
+++ b/pfam_gap_rates/UPF0020.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0020", "n_seqs": 1951, "length": 228, "gap_rates": [0.40235776524859046, 0.3690415171706817, 0.22757560225525372, 0.16094310609943618, 0.14710404920553563, 0.12711430035879037, 0.12198872373141978, 0.10251153254741159, 0.07944643772424398, 0.07278318810866223, 0.06765761148129165, 0.06150691952844695, 0.05996924654023578, 0.05945668887749872, 0.05689390056381343, 0.056381342901076374, 0.053818554587391085, 0.05433111225012814, 0.05433111225012814, 0.05228088159917991, 0.05176832393644285, 0.05074320861096873, 0.05176832393644285, 0.05176832393644285, 0.05176832393644285, 0.04818042029728344, 0.9456688877498719, 0.9482316760635572, 0.9482316760635572, 0.9400307534597643, 0.04613018964633521, 0.04561763198359815, 0.03997949769349052, 0.037929267042542285, 0.02972834443874936, 0.028190671450538187, 0.027678113787801127, 0.027678113787801127, 0.028190671450538187, 0.026140440799589954, 0.026140440799589954, 0.026140440799589954, 0.02665299846232701, 0.02716555612506407, 0.02716555612506407, 0.02716555612506407, 0.028703229113275244, 0.028703229113275244, 0.0292157867760123, 0.03229113275243465, 0.03229113275243465, 0.03229113275243465, 0.03177857508969759, 0.032803690415171706, 0.03587903639159405, 0.036391594054331115, 0.03690415171706817, 0.04202972834443875, 0.3239364428498206, 0.34392619169656585, 0.3423885187083547, 0.3305996924654024, 0.34495130702203997, 0.33828805740645823, 0.33828805740645823, 0.3352127114300359, 0.33572526909277295, 0.33470015376729884, 0.38083034341363403, 0.38544336237826754, 0.3900563813429011, 0.39671963095848284, 0.4284982060481804, 0.45156330087134805, 0.9072270630445926, 0.9425935417734496, 0.929779600205023, 0.7042542286007176, 0.4372116863147104, 0.4079958995386981, 0.3926191696565864, 0.38646847770374165, 0.3813429010763711, 0.37929267042542286, 0.33572526909277295, 0.36699128651973345, 0.36135315222962583, 0.3557150179395182, 0.3521271143003588, 0.35058944131214764, 0.3511019989748847, 0.34136340338288057, 0.33470015376729884, 0.31983598154792414, 0.7098923628908252, 0.9179907739620707, 0.9492567913890313, 0.8631471040492056, 0.5976422347514095, 0.30958482829318296, 0.3203485392106612, 0.3239364428498206, 0.2895950794464377, 0.7929267042542286, 0.7298821117375704, 0.22142491030240902, 0.19425935417734494, 0.06509482316760636, 0.06560738083034341, 0.06611993849308047, 0.06560738083034341, 0.06663249615581752, 0.06970784213223988, 0.07842132239876987, 0.08252178370066633, 0.08610968733982573, 0.08354689902614044, 0.08252178370066633, 0.08200922603792926, 0.07124551512045105, 0.06868272680676576, 0.06817016914402871, 0.06868272680676576, 0.07022039979497693, 0.07278318810866223, 0.07637109174782163, 0.08252178370066633, 0.0902101486417222, 0.09277293695540749, 0.09226037929267042, 0.09174782162993336, 0.08867247565351102, 0.08764736032803691, 0.08508457201435161, 0.08303434136340339, 0.0840594566888775, 0.1168631471040492, 0.10148641722193746, 0.08047155304971809, 0.0814966683751922, 0.10507432086109687, 0.08662224500256278, 0.08559712967708867, 0.8467452588416197, 0.9436186570989237, 0.9174782162993337, 0.7744746283956945, 0.4664274730907227, 0.1230138390568939, 0.12096360840594567, 0.17734495130702205, 0.0999487442337263, 0.08764736032803691, 0.0902101486417222, 0.08098411071245515, 0.07944643772424398, 0.07944643772424398, 0.07995899538698104, 0.07995899538698104, 0.0814966683751922, 0.08457201435161456, 0.08662224500256278, 0.09328549461814455, 0.10046130189646335, 0.10661199384930804, 0.12506406970784215, 0.1337775499743721, 0.176832393644285, 0.19887237314197848, 0.2096360840594567, 0.22091235263967196, 0.24295233213736545, 0.2665299846232701, 0.2675550999487442, 0.2685802152742183, 0.274218349564326, 0.27268067657611483, 0.2706304459251666, 0.27114300358790366, 0.27268067657611483, 0.2767811378780113, 0.2798564838544336, 0.28088159917990774, 0.27934392619169657, 0.2803690415171707, 0.5064069707842133, 0.3080471553049718, 0.30138390568939005, 0.2972834443874936, 0.8334187596104562, 0.8026652998462327, 0.29882111737570477, 0.29318298308559715, 0.29215786776012304, 0.2926704254228601, 0.2972834443874936, 0.2983085597129677, 0.30958482829318296, 0.3203485392106612, 0.32701178882624293, 0.3352127114300359, 0.33828805740645823, 0.3423885187083547, 0.3470015376729882, 0.3500768836494106, 0.3546899026140441, 0.3654536135315223, 0.3762173244490005, 0.3849308047155305, 0.39210661199384933, 0.946694003075346, 0.4054331112250128, 0.4120963608405946, 0.4177344951307022, 0.4213223987698616, 0.42439774474628394, 0.42439774474628394, 0.43106099436186573, 0.43669912865197336, 0.4382368016401845, 0.4418247052793439, 0.4469502819067145, 0.4531009738595592, 0.4582265504869298, 0.48026652998462327, 0.5648385443362378, 0.6781137878011276, 0.902614044079959], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0223.gap.json b/pfam_gap_rates/UPF0223.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6124b0ea55d4d94dd86c3bc2be5e7cd6392e0aa6
--- /dev/null
+++ b/pfam_gap_rates/UPF0223.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0223", "n_seqs": 161, "length": 85, "gap_rates": [0.2360248447204969, 0.06832298136645963, 0.037267080745341616, 0.031055900621118012, 0.031055900621118012, 0.024844720496894408, 0.018633540372670808, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.018633540372670808, 0.024844720496894408, 0.024844720496894408, 0.037267080745341616, 0.049689440993788817, 0.14285714285714285, 0.2236024844720497, 0.35403726708074534, 0.5093167701863354], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0560.gap.json b/pfam_gap_rates/UPF0560.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0eed637836326acac837e5b8cd772ff373cf3611
--- /dev/null
+++ b/pfam_gap_rates/UPF0560.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/UTRA.gap.json b/pfam_gap_rates/UTRA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..523ecd8cf0e115c0aefa016b3cf5b91e161aa2ed
--- /dev/null
+++ b/pfam_gap_rates/UTRA.gap.json
@@ -0,0 +1 @@
+{"family": "UTRA", "n_seqs": 3421, "length": 145, "gap_rates": [0.8807366267173341, 0.4948845366851798, 0.3612978661210172, 0.3089739842151418, 0.26220403390821395, 0.2101724641917568, 0.17480268927214265, 0.15638702133878982, 0.1394329143525285, 0.13066354866997953, 0.12247880736626718, 0.10990938322128033, 0.09500146156094709, 0.09003215434083602, 0.07746273019584916, 0.07483192049108447, 0.0701549254603917, 0.0689856767027185, 0.08915521777258112, 0.06255480853551593, 0.061385559777842734, 0.059923998830751245, 0.058754750073078045, 0.059339374451914645, 0.05787781350482315, 0.056708564747149956, 0.05466237942122187, 0.05203156971645718, 0.10318620286465946, 0.07600116924875767, 0.05524700380005846, 0.03390821397252265, 0.02981584332066647, 0.026600409237065185, 0.021923414206372407, 0.02776965799473838, 0.01870798012277112, 0.017831043554516222, 0.016954106986261326, 0.01666179479684303, 0.01607717041800643, 0.015492546039169833, 0.014323297281496639, 0.014030985092078339, 0.013446360713241743, 0.014030985092078339, 0.013154048523823443, 0.014030985092078339, 0.013446360713241743, 0.013154048523823443, 0.013154048523823443, 0.013154048523823443, 0.012569424144986846, 0.012569424144986846, 0.012569424144986846, 0.012861736334405145, 0.013446360713241743, 0.01373867290266004, 0.012861736334405145, 0.012569424144986846, 0.08418591055247004, 0.025138848289973693, 0.01900029231218942, 0.012861736334405145, 0.949137679041216, 0.9359836305173925, 0.01373867290266004, 0.015492546039169833, 0.06664717918737212, 0.06606255480853551, 0.39169833382052033, 0.9190295235311312, 0.8851213095586086, 0.01870798012277112, 0.010815551008477054, 0.00935399006138556, 0.009061677871967261, 0.00935399006138556, 0.009061677871967261, 0.00935399006138556, 0.009061677871967261, 0.01140017538731365, 0.01169248757673195, 0.35486699795381466, 0.0903244665302543, 0.010815551008477054, 0.010523238819058756, 0.009061677871967261, 0.00935399006138556, 0.00935399006138556, 0.008477053493130663, 0.008184741303712365, 0.008477053493130663, 0.00935399006138556, 0.00964630225080386, 0.009938614440222157, 0.008769365682548963, 0.009061677871967261, 0.009061677871967261, 0.009938614440222157, 0.009938614440222157, 0.010815551008477054, 0.010230926629640456, 0.00935399006138556, 0.008477053493130663, 0.008769365682548963, 0.008769365682548963, 0.00964630225080386, 0.010230926629640456, 0.010523238819058756, 0.012277111955568546, 0.011107863197895352, 0.012861736334405145, 0.012569424144986846, 0.01870798012277112, 0.013154048523823443, 0.012277111955568546, 0.012277111955568546, 0.012277111955568546, 0.012861736334405145, 0.01373867290266004, 0.013154048523823443, 0.014615609470914937, 0.017831043554516222, 0.01607717041800643, 0.017246419175679626, 0.017246419175679626, 0.15258696287635196, 0.01929260450160772, 0.020169541069862615, 0.021631102016954108, 0.021631102016954108, 0.0230926629640456, 0.0233849751534639, 0.024554223911137093, 0.02747734580532008, 0.03536977491961415, 0.03916983338205203, 0.049693072201110786, 0.0701549254603917, 0.09880152002338498, 0.143817597193803, 0.2095878398129202, 0.29611224788073665, 0.6860567085647471], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UVR.gap.json b/pfam_gap_rates/UVR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39cef310ccc021a4ceb7897696f1b83a42422ed4
--- /dev/null
+++ b/pfam_gap_rates/UVR.gap.json
@@ -0,0 +1 @@
+{"family": "UVR", "n_seqs": 5000, "length": 36, "gap_rates": [0.7294, 0.392, 0.2202, 0.1272, 0.078, 0.0426, 0.02, 0.0134, 0.0084, 0.0054, 0.001, 0.0006, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002, 0.0002, 0.0006, 0.0024, 0.0096, 0.0142, 0.0244, 0.0412, 0.0794, 0.1854, 0.355, 0.8602], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ub-RnfH.gap.json b/pfam_gap_rates/Ub-RnfH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e30d59826f84957bb81754b8d7571befced74a21
--- /dev/null
+++ b/pfam_gap_rates/Ub-RnfH.gap.json
@@ -0,0 +1 @@
+{"family": "Ub-RnfH", "n_seqs": 328, "length": 88, "gap_rates": [0.2865853658536585, 0.06402439024390244, 0.051829268292682924, 0.039634146341463415, 0.039634146341463415, 0.03353658536585366, 0.03048780487804878, 0.027439024390243903, 0.9085365853658537, 0.027439024390243903, 0.027439024390243903, 0.027439024390243903, 0.024390243902439025, 0.021341463414634148, 0.018292682926829267, 0.018292682926829267, 0.018292682926829267, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.009146341463414634, 0.009146341463414634, 0.009146341463414634, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.01524390243902439, 0.009146341463414634, 0.012195121951219513, 0.012195121951219513, 0.01524390243902439, 0.012195121951219513, 0.06097560975609756, 0.04878048780487805, 0.051829268292682924, 0.948170731707317, 0.0701219512195122, 0.057926829268292686, 0.03048780487804878, 0.03353658536585366, 0.948170731707317, 0.024390243902439025, 0.018292682926829267, 0.009146341463414634, 0.009146341463414634, 0.009146341463414634, 0.009146341463414634, 0.009146341463414634, 0.009146341463414634, 0.009146341463414634, 0.009146341463414634, 0.006097560975609756, 0.8932926829268293, 0.8902439024390244, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.009146341463414634, 0.009146341463414634, 0.009146341463414634, 0.009146341463414634, 0.012195121951219513, 0.027439024390243903, 0.027439024390243903, 0.03353658536585366, 0.039634146341463415, 0.042682926829268296, 0.04573170731707317, 0.06097560975609756, 0.16463414634146342], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UcrQ.gap.json b/pfam_gap_rates/UcrQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b971813fd8329360e306950fc81cbe29226a40ad
--- /dev/null
+++ b/pfam_gap_rates/UcrQ.gap.json
@@ -0,0 +1 @@
+{"family": "UcrQ", "n_seqs": 241, "length": 80, "gap_rates": [0.42738589211618255, 0.13692946058091288, 0.12863070539419086, 0.12033195020746888, 0.11618257261410789, 0.9253112033195021, 0.0912863070539419, 0.47717842323651455, 0.4066390041493776, 0.06224066390041494, 0.05394190871369295, 0.04564315352697095, 0.03319502074688797, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.03734439834024896, 0.004149377593360996, 0.004149377593360996, 0.0, 0.0, 0.004149377593360996, 0.004149377593360996, 0.008298755186721992, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.91701244813278, 0.004149377593360996, 0.0, 0.0, 0.0, 0.012448132780082987, 0.008298755186721992, 0.004149377593360996, 0.008298755186721992, 0.016597510373443983, 0.029045643153526972, 0.029045643153526972, 0.024896265560165973, 0.029045643153526972, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.029045643153526972, 0.03319502074688797, 0.03319502074688797, 0.03734439834024896, 0.04564315352697095, 0.04564315352697095, 0.04979253112033195, 0.06639004149377593, 0.07468879668049792, 0.07883817427385892, 0.0954356846473029, 0.0995850622406639, 0.13278008298755187, 0.13278008298755187, 0.2821576763485477, 0.4315352697095436, 0.8298755186721992], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ufm1.gap.json b/pfam_gap_rates/Ufm1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3492c2b2b0e4a6ede2e2d9dc5f9c5008153d4b07
--- /dev/null
+++ b/pfam_gap_rates/Ufm1.gap.json
@@ -0,0 +1 @@
+{"family": "Ufm1", "n_seqs": 158, "length": 75, "gap_rates": [0.1962025316455696, 0.16455696202531644, 0.16455696202531644, 0.16455696202531644, 0.16455696202531644, 0.16455696202531644, 0.15822784810126583, 0.15822784810126583, 0.15822784810126583, 0.15822784810126583, 0.15822784810126583, 0.15822784810126583, 0.15822784810126583, 0.15822784810126583, 0.15822784810126583, 0.1518987341772152, 0.1518987341772152, 0.12025316455696203, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.0379746835443038, 0.03164556962025317, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.05063291139240506, 0.03164556962025317, 0.056962025316455694, 0.056962025316455694, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.056962025316455694, 0.06962025316455696, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.10126582278481013, 0.10759493670886076, 0.10759493670886076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Uma2.gap.json b/pfam_gap_rates/Uma2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8251d95cfce5078d33795c22f9cff69a1d76be77
--- /dev/null
+++ b/pfam_gap_rates/Uma2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Urease_beta.gap.json b/pfam_gap_rates/Urease_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2cc9a4d57f261a190667db8e09e5b2fac308bc39
--- /dev/null
+++ b/pfam_gap_rates/Urease_beta.gap.json
@@ -0,0 +1 @@
+{"family": "Urease_beta", "n_seqs": 741, "length": 99, "gap_rates": [0.13765182186234817, 0.09041835357624832, 0.08097165991902834, 0.07422402159244265, 0.06612685560053981, 0.059379217273954114, 0.9055330634278003, 0.04723346828609987, 0.044534412955465584, 0.037786774628879895, 0.037786774628879895, 0.03643724696356275, 0.03643724696356275, 0.03508771929824561, 0.033738191632928474, 0.032388663967611336, 0.0310391363022942, 0.02564102564102564, 0.016194331983805668, 0.012145748987854251, 0.012145748987854251, 0.010796221322537112, 0.010796221322537112, 0.010796221322537112, 0.012145748987854251, 0.009446693657219974, 0.009446693657219974, 0.009446693657219974, 0.009446693657219974, 0.010796221322537112, 0.009446693657219974, 0.009446693657219974, 0.009446693657219974, 0.009446693657219974, 0.006747638326585695, 0.006747638326585695, 0.006747638326585695, 0.006747638326585695, 0.006747638326585695, 0.006747638326585695, 0.006747638326585695, 0.006747638326585695, 0.006747638326585695, 0.006747638326585695, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.004048582995951417, 0.004048582995951417, 0.004048582995951417, 0.004048582995951417, 0.004048582995951417, 0.004048582995951417, 0.004048582995951417, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.002699055330634278, 0.002699055330634278, 0.002699055330634278, 0.002699055330634278, 0.002699055330634278, 0.002699055330634278, 0.002699055330634278, 0.004048582995951417, 0.004048582995951417, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.005398110661268556, 0.006747638326585695, 0.006747638326585695, 0.006747638326585695, 0.009446693657219974, 0.01349527665317139, 0.016194331983805668, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.018893387314439947, 0.029689608636977057, 0.04993252361673414, 0.07017543859649122, 0.08771929824561403, 0.12280701754385964, 0.873144399460189], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ureidogly_lyase.gap.json b/pfam_gap_rates/Ureidogly_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5bbcc555fa5f5c9da4b0b36f1b463415b8d9e548
--- /dev/null
+++ b/pfam_gap_rates/Ureidogly_lyase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Usher.gap.json b/pfam_gap_rates/Usher.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a348828c338ba61ffda284e677b233660c152218
--- /dev/null
+++ b/pfam_gap_rates/Usher.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Utp12.gap.json b/pfam_gap_rates/Utp12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5784b5034f6302b4f738a0c8ba054f52875db250
--- /dev/null
+++ b/pfam_gap_rates/Utp12.gap.json
@@ -0,0 +1 @@
+{"family": "Utp12", "n_seqs": 906, "length": 114, "gap_rates": [0.6313465783664459, 0.271523178807947, 0.15894039735099338, 0.11147902869757174, 0.08719646799116998, 0.0728476821192053, 0.0684326710816777, 0.33002207505518766, 0.06181015452538632, 0.05739514348785872, 0.05408388520971302, 0.037527593818984545, 0.03090507726269316, 0.02759381898454746, 0.023178807947019868, 0.023178807947019868, 0.016556291390728478, 0.008830022075055188, 0.006622516556291391, 0.005518763796909493, 0.004415011037527594, 0.004415011037527594, 0.004415011037527594, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.002207505518763797, 0.002207505518763797, 0.10154525386313466, 0.0033112582781456954, 0.45584988962472406, 0.004415011037527594, 0.0011037527593818985, 0.0, 0.9359823399558499, 0.9448123620309051, 0.9459161147902869, 0.9392935982339956, 0.9315673289183223, 0.002207505518763797, 0.9392935982339956, 0.002207505518763797, 0.002207505518763797, 0.002207505518763797, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.0033112582781456954, 0.002207505518763797, 0.002207505518763797, 0.005518763796909493, 0.008830022075055188, 0.012141280353200883, 0.011037527593818985, 0.016556291390728478, 0.018763796909492272, 0.016556291390728478, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.016556291390728478, 0.12582781456953643, 0.8322295805739515, 0.5971302428256071, 0.04856512141280353, 0.11037527593818984, 0.02097130242825607, 0.017660044150110375, 0.01545253863134658, 0.01545253863134658, 0.01545253863134658, 0.016556291390728478, 0.016556291390728478, 0.017660044150110375, 0.019867549668874173, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.02097130242825607, 0.02097130242825607, 0.02207505518763797, 0.02097130242825607, 0.02097130242825607, 0.02207505518763797, 0.026490066225165563, 0.03532008830022075, 0.04746136865342163, 0.05077262693156733, 0.05187637969094923, 0.052980132450331126, 0.4094922737306843, 0.059602649006622516, 0.059602649006622516, 0.06291390728476821, 0.0706401766004415, 0.08278145695364239, 0.10927152317880795, 0.30132450331125826, 0.8719646799116998], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UxuA.gap.json b/pfam_gap_rates/UxuA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c67c5f62004c4f8500b62dab4fb49c1a846f279
--- /dev/null
+++ b/pfam_gap_rates/UxuA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/V-SNARE_C.gap.json b/pfam_gap_rates/V-SNARE_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e6b5250dbd8118642b3ebed3949de491b59f6a7
--- /dev/null
+++ b/pfam_gap_rates/V-SNARE_C.gap.json
@@ -0,0 +1 @@
+{"family": "V-SNARE_C", "n_seqs": 1163, "length": 66, "gap_rates": [0.645743766122098, 0.37833190025795355, 0.2699914015477214, 0.1831470335339639, 0.1461736887360275, 0.1057609630266552, 0.07222699914015478, 0.05588993981083405, 0.046431642304385214, 0.03869303525365434, 0.03009458297506449, 0.025795356835769563, 0.025795356835769563, 0.024935511607910577, 0.017196904557179708, 0.014617368873602751, 0.01117798796216681, 0.009458297506448839, 0.009458297506448839, 0.008598452278589854, 0.007738607050730868, 0.004299226139294927, 0.0025795356835769563, 0.0025795356835769563, 0.0025795356835769563, 0.0025795356835769563, 0.0025795356835769563, 0.0025795356835769563, 0.0025795356835769563, 0.0017196904557179708, 0.0017196904557179708, 0.0017196904557179708, 0.0025795356835769563, 0.0017196904557179708, 0.0017196904557179708, 0.0017196904557179708, 0.0025795356835769563, 0.0025795356835769563, 0.0025795356835769563, 0.0025795356835769563, 0.0025795356835769563, 0.0034393809114359416, 0.0034393809114359416, 0.010318142734307825, 0.013757523645743766, 0.017196904557179708, 0.019776440240756664, 0.019776440240756664, 0.021496130696474634, 0.024935511607910577, 0.03267411865864144, 0.03353396388650043, 0.03353396388650043, 0.034393809114359415, 0.0352536543422184, 0.03611349957007739, 0.03697334479793637, 0.03869303525365434, 0.03955288048151333, 0.04299226139294927, 0.04815133276010318, 0.05760963026655202, 0.06964746345657781, 0.14445399828030955, 0.2063628546861565, 0.6147893379191746], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VCBS.gap.json b/pfam_gap_rates/VCBS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b9d362b9111b45951562137dcdd509fb907bb8c
--- /dev/null
+++ b/pfam_gap_rates/VCBS.gap.json
@@ -0,0 +1 @@
+{"family": "VCBS", "n_seqs": 5000, "length": 91, "gap_rates": [0.12, 0.1084, 0.1036, 0.0998, 0.0966, 0.0944, 0.0916, 0.086, 0.078, 0.0778, 0.0772, 0.0756, 0.0718, 0.776, 0.8832, 0.9316, 0.9466, 0.911, 0.856, 0.7446, 0.063, 0.6262, 0.0812, 0.927, 0.849, 0.0578, 0.0232, 0.8988, 0.9268, 0.9464, 0.9384, 0.9172, 0.8868, 0.0092, 0.0034, 0.0006, 0.0002, 0.0002, 0.0, 0.0024, 0.074, 0.9344, 0.0406, 0.0478, 0.04, 0.943, 0.9302, 0.0346, 0.0568, 0.079, 0.0776, 0.0658, 0.0676, 0.9416, 0.045, 0.938, 0.8434, 0.027, 0.0182, 0.0174, 0.0136, 0.8034, 0.8974, 0.9314, 0.9162, 0.8614, 0.6826, 0.0116, 0.0706, 0.0296, 0.0164, 0.0142, 0.926, 0.004, 0.9454, 0.002, 0.0016, 0.0016, 0.0016, 0.0018, 0.002, 0.0028, 0.0038, 0.0044, 0.0054, 0.0062, 0.0072, 0.01, 0.0158, 0.0336, 0.5426], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VEG.gap.json b/pfam_gap_rates/VEG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca96ef65eee7702057e8c20b0e15473a66889f31
--- /dev/null
+++ b/pfam_gap_rates/VEG.gap.json
@@ -0,0 +1 @@
+{"family": "VEG", "n_seqs": 378, "length": 74, "gap_rates": [0.9391534391534392, 0.17195767195767195, 0.0582010582010582, 0.05026455026455026, 0.03439153439153439, 0.03439153439153439, 0.03439153439153439, 0.031746031746031744, 0.0291005291005291, 0.026455026455026454, 0.023809523809523808, 0.023809523809523808, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.013227513227513227, 0.013227513227513227, 0.013227513227513227, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.007936507936507936, 0.007936507936507936, 0.9391534391534392, 0.30687830687830686, 0.21428571428571427, 0.1164021164021164, 0.05291005291005291, 0.031746031746031744, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.018518518518518517, 0.828042328042328], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VHL.gap.json b/pfam_gap_rates/VHL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f758a5a3564ac8c8b661271e6fb9bdc54253fe0e
--- /dev/null
+++ b/pfam_gap_rates/VHL.gap.json
@@ -0,0 +1 @@
+{"family": "VHL", "n_seqs": 156, "length": 81, "gap_rates": [0.6666666666666666, 0.46794871794871795, 0.33974358974358976, 0.32051282051282054, 0.2692307692307692, 0.25, 0.23076923076923078, 0.17307692307692307, 0.12179487179487179, 0.08974358974358974, 0.07692307692307693, 0.07692307692307693, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.05128205128205128, 0.04487179487179487, 0.038461538461538464, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.04487179487179487, 0.038461538461538464, 0.038461538461538464, 0.03205128205128205, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.03205128205128205, 0.03205128205128205, 0.038461538461538464, 0.038461538461538464, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.02564102564102564, 0.01282051282051282, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.05128205128205128, 0.08333333333333333, 0.10897435897435898, 0.22435897435897437, 0.24358974358974358, 0.32051282051282054, 0.34615384615384615, 0.3782051282051282, 0.46794871794871795, 0.4935897435897436, 0.5705128205128205, 0.6282051282051282, 0.6538461538461539, 0.6730769230769231, 0.6858974358974359, 0.6858974358974359, 0.6858974358974359, 0.6923076923076923, 0.6987179487179487, 0.7051282051282052, 0.7051282051282052, 0.7307692307692307, 0.7564102564102564, 0.8397435897435898, 0.8589743589743589, 0.8846153846153846], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VHP.gap.json b/pfam_gap_rates/VHP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d48943b2578f0959b32e15180d390b062aca7864
--- /dev/null
+++ b/pfam_gap_rates/VHP.gap.json
@@ -0,0 +1 @@
+{"family": "VHP", "n_seqs": 518, "length": 36, "gap_rates": [0.03861003861003861, 0.007722007722007722, 0.007722007722007722, 0.005791505791505791, 0.003861003861003861, 0.003861003861003861, 0.003861003861003861, 0.003861003861003861, 0.0019305019305019305, 0.0019305019305019305, 0.0019305019305019305, 0.0019305019305019305, 0.0019305019305019305, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019305019305019305, 0.0019305019305019305, 0.003861003861003861, 0.007722007722007722, 0.007722007722007722, 0.009652509652509652, 0.011583011583011582, 0.017374517374517374, 0.02895752895752896, 0.04054054054054054, 0.13706563706563707], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VRR_NUC.gap.json b/pfam_gap_rates/VRR_NUC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..670f1637fb59f4f689385a669c1b980dbe195489
--- /dev/null
+++ b/pfam_gap_rates/VRR_NUC.gap.json
@@ -0,0 +1 @@
+{"family": "VRR_NUC", "n_seqs": 527, "length": 132, "gap_rates": [0.8937381404174574, 0.7893738140417458, 0.7248576850094877, 0.6641366223908919, 0.6280834914611005, 0.5863377609108159, 0.540796963946869, 0.5009487666034156, 0.4819734345351044, 0.4478178368121442, 0.43263757115749524, 0.4079696394686907, 0.41366223908918404, 0.6261859582542695, 0.3795066413662239, 0.3908918406072106, 0.3757115749525617, 0.9089184060721063, 0.9297912713472486, 0.8956356736242884, 0.3757115749525617, 0.33396584440227706, 0.3301707779886148, 0.32447817836812143, 0.32447817836812143, 0.32447817836812143, 0.32447817836812143, 0.32447817836812143, 0.32827324478178366, 0.32637571157495254, 0.4250474383301708, 0.4098671726755218, 0.4307400379506641, 0.4459203036053131, 0.4573055028462998, 0.5920303605313093, 0.8766603415559773, 0.4648956356736243, 0.45161290322580644, 0.43833017077798864, 0.4307400379506641, 0.3908918406072106, 0.3776091081593928, 0.2998102466793169, 0.269449715370019, 0.27514231499051234, 0.2637571157495256, 0.25616698292220114, 0.2523719165085389, 0.23719165085388993, 0.2314990512333966, 0.22770398481973433, 0.2314990512333966, 0.22960151802656548, 0.22960151802656548, 0.3567362428842505, 0.3510436432637571, 0.3396584440227704, 0.33586337760910817, 0.32637571157495254, 0.3036053130929791, 0.18026565464895636, 0.11954459203036052, 0.06451612903225806, 0.030360531309297913, 0.024667931688804556, 0.024667931688804556, 0.024667931688804556, 0.024667931688804556, 0.024667931688804556, 0.024667931688804556, 0.026565464895635674, 0.030360531309297913, 0.030360531309297913, 0.04364326375711575, 0.04554079696394687, 0.04743833017077799, 0.11764705882352941, 0.4250474383301708, 0.6736242884250474, 0.7817836812144212, 0.872865275142315, 0.9089184060721063, 0.9146110056925996, 0.9316888045540797, 0.937381404174573, 0.9430740037950665, 0.9316888045540797, 0.9297912713472486, 0.9127134724857685, 0.905123339658444, 0.8538899430740038, 0.7590132827324478, 0.6053130929791272, 0.07969639468690702, 0.036053130929791274, 0.015180265654648957, 0.015180265654648957, 0.015180265654648957, 0.015180265654648957, 0.017077798861480076, 0.018975332068311195, 0.022770398481973434, 0.020872865275142316, 0.018975332068311195, 0.018975332068311195, 0.018975332068311195, 0.018975332068311195, 0.020872865275142316, 0.020872865275142316, 0.020872865275142316, 0.020872865275142316, 0.022770398481973434, 0.024667931688804556, 0.024667931688804556, 0.026565464895635674, 0.030360531309297913, 0.030360531309297913, 0.030360531309297913, 0.030360531309297913, 0.036053130929791274, 0.04933586337760911, 0.04554079696394687, 0.056925996204933584, 0.06072106261859583, 0.06641366223908918, 0.07210626185958255, 0.09487666034155598, 0.1555977229601518, 0.24857685009487665, 0.4857685009487666, 0.8975332068311196], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VWD.gap.json b/pfam_gap_rates/VWD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7e2d89db6f125a9cb691b6390a2f25b5e586875
--- /dev/null
+++ b/pfam_gap_rates/VWD.gap.json
@@ -0,0 +1 @@
+{"family": "VWD", "n_seqs": 2067, "length": 187, "gap_rates": [0.2331881954523464, 0.18238993710691823, 0.12675374939525882, 0.10933720367682633, 0.09433962264150944, 0.08950169327527818, 0.165940977261732, 0.0822447992259313, 0.07885824866956942, 0.07789066279632317, 0.07740686985970005, 0.0764392839864538, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07595549104983067, 0.07305273343009192, 0.07305273343009192, 0.07305273343009192, 0.07305273343009192, 0.07160135462022255, 0.08176100628930817, 0.0706337687469763, 0.09675858732462506, 0.06966618287373004, 0.07014997581035316, 0.9129172714078374, 0.8205128205128205, 0.07208514755684567, 0.0745041122399613, 0.07595549104983067, 0.0745041122399613, 0.10062893081761007, 0.08756652152878568, 0.07789066279632317, 0.08321238509917755, 0.24141267537493952, 0.5195936139332366, 0.8751814223512336, 0.9313014029995162, 0.9492017416545718, 0.9095307208514756, 0.8301886792452831, 0.5616835994194485, 0.16787614900822448, 0.10595065312046444, 0.07256894049346879, 0.06966618287373004, 0.06821480406386067, 0.07208514755684567, 0.20948234155781326, 0.13691340106434446, 0.09046927914852443, 0.08563134978229318, 0.08272859216255443, 0.07885824866956942, 0.11127237542331882, 0.09579100145137881, 0.12772133526850507, 0.1606192549588776, 0.14271891630382197, 0.413159167876149, 0.9332365747460087, 0.24141267537493952, 0.17658442186744072, 0.13449443638122882, 0.07934204160619256, 0.07014997581035316, 0.06821480406386067, 0.06724721819061441, 0.06676342525399129, 0.0686985970004838, 0.07208514755684567, 0.8538945331398161, 0.9346879535558781, 0.8906627963231737, 0.7871311078858249, 0.06627963231736816, 0.06966618287373004, 0.07014997581035316, 0.07111756168359942, 0.07111756168359942, 0.07111756168359942, 0.0686985970004838, 0.07111756168359942, 0.07982583454281568, 0.5529753265602322, 0.8253507498790518, 0.9017900338655056, 0.9453313981615868, 0.9225931301403, 0.8746976294146106, 0.6748911465892597, 0.23367198838896952, 0.13304305757135945, 0.1165940977261732, 0.10062893081761007, 0.09627479438800193, 0.08563134978229318, 0.07934204160619256, 0.07547169811320754, 0.07498790517658442, 0.09869375907111756, 0.09675858732462506, 0.1204644412191582, 0.8925979680696662, 0.9254958877600387, 0.8330914368650217, 0.09433962264150944, 0.09433962264150944, 0.10449927431059507, 0.16545718432510886, 0.13642960812772134, 0.11901306240928883, 0.12772133526850507, 0.9366231253023706, 0.8277697145621674, 0.16013546202225448, 0.10788582486695694, 0.09433962264150944, 0.08901790033865506, 0.08853410740203194, 0.08708272859216255, 0.9158200290275762, 0.94581519109821, 0.9283986453797775, 0.888243831640058, 0.22835026608611514, 0.12433478471214321, 0.4320270924044509, 0.11417513304305757, 0.08369617803580068, 0.07256894049346879, 0.07014997581035316, 0.07256894049346879, 0.8311562651185292, 0.07160135462022255, 0.06531204644412192, 0.06627963231736816, 0.06434446057087566, 0.06531204644412192, 0.0648282535074988, 0.12868892114175132, 0.9158200290275762, 0.12578616352201258, 0.07305273343009192, 0.06095791001451379, 0.061925495887760036, 0.07208514755684567, 0.9027576197387518, 0.3734881470730527, 0.25157232704402516, 0.08272859216255443, 0.06386066763425254, 0.06337687469762941, 0.06289308176100629, 0.062409288824383166, 0.06289308176100629, 0.06434446057087566, 0.06337687469762941, 0.0648282535074988, 0.06531204644412192, 0.11562651185292695, 0.07111756168359942, 0.06434446057087566, 0.0648282535074988, 0.0648282535074988, 0.06676342525399129, 0.06724721819061441, 0.06724721819061441, 0.07160135462022255, 0.07160135462022255, 0.07402031930333818, 0.07740686985970005, 0.07885824866956942, 0.09143686502177069, 0.09095307208514755, 0.09966134494436381, 0.10788582486695694, 0.1107885824866957, 0.11611030478955008, 0.1378809869375907, 0.16497339138848574, 0.19448476052249636, 0.23947750362844702, 0.31204644412191584, 0.7818093855829705], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vac14_Fig4_bd.gap.json b/pfam_gap_rates/Vac14_Fig4_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89bce7e93ae425336c0c449f7bfd4aea0cfa00bd
--- /dev/null
+++ b/pfam_gap_rates/Vac14_Fig4_bd.gap.json
@@ -0,0 +1 @@
+{"family": "Vac14_Fig4_bd", "n_seqs": 354, "length": 197, "gap_rates": [0.6497175141242938, 0.3389830508474576, 0.2062146892655367, 0.1864406779661017, 0.1807909604519774, 0.17231638418079095, 0.16666666666666666, 0.16666666666666666, 0.1553672316384181, 0.15254237288135594, 0.1497175141242938, 0.14124293785310735, 0.12994350282485875, 0.1271186440677966, 0.1271186440677966, 0.1271186440677966, 0.1271186440677966, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12146892655367232, 0.12146892655367232, 0.12146892655367232, 0.12146892655367232, 0.12146892655367232, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.9067796610169492, 0.923728813559322, 0.923728813559322, 0.943502824858757, 0.9350282485875706, 0.923728813559322, 0.9180790960451978, 0.9067796610169492, 0.12429378531073447, 0.12429378531073447, 0.11864406779661017, 0.10451977401129943, 0.10734463276836158, 0.1016949152542373, 0.09887005649717515, 0.09887005649717515, 0.09887005649717515, 0.09887005649717515, 0.09887005649717515, 0.09322033898305085, 0.09322033898305085, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.08757062146892655, 0.08757062146892655, 0.08192090395480225, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.8926553672316384, 0.07344632768361582, 0.09322033898305085, 0.10451977401129943, 0.1440677966101695, 0.1271186440677966, 0.1327683615819209, 0.8615819209039548, 0.8870056497175142, 0.940677966101695, 0.9293785310734464, 0.884180790960452, 0.7542372881355932, 0.1016949152542373, 0.10451977401129943, 0.10451977401129943, 0.1016949152542373, 0.10734463276836158, 0.10734463276836158, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11864406779661017, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.10734463276836158, 0.10734463276836158, 0.10734463276836158, 0.10734463276836158, 0.11299435028248588, 0.11581920903954802, 0.11299435028248588, 0.12429378531073447, 0.1271186440677966, 0.12994350282485875, 0.12146892655367232, 0.11299435028248588, 0.11299435028248588, 0.11581920903954802, 0.11864406779661017, 0.11864406779661017, 0.12146892655367232, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.12146892655367232, 0.12146892655367232, 0.12146892655367232, 0.12429378531073447, 0.12146892655367232, 0.12429378531073447, 0.12146892655367232, 0.12146892655367232, 0.12146892655367232, 0.12146892655367232, 0.11581920903954802, 0.11299435028248588, 0.11864406779661017, 0.11581920903954802, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.12146892655367232, 0.11864406779661017, 0.11581920903954802, 0.11299435028248588, 0.9322033898305084, 0.923728813559322, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.11299435028248588, 0.11581920903954802, 0.11581920903954802, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.864406779661017, 0.12146892655367232, 0.12146892655367232, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.1271186440677966, 0.1271186440677966, 0.1271186440677966, 0.1271186440677966, 0.1271186440677966, 0.1327683615819209, 0.14689265536723164, 0.2740112994350282], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Voldacs.gap.json b/pfam_gap_rates/Voldacs.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1922e2ed3c7622309e347ffcbd1631585dbed400
--- /dev/null
+++ b/pfam_gap_rates/Voldacs.gap.json
@@ -0,0 +1 @@
+{"family": "Voldacs", "n_seqs": 314, "length": 193, "gap_rates": [0.2929936305732484, 0.1910828025477707, 0.1592356687898089, 0.15286624203821655, 0.15286624203821655, 0.15286624203821655, 0.14968152866242038, 0.12738853503184713, 0.10509554140127389, 0.10509554140127389, 0.10509554140127389, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.945859872611465, 0.7802547770700637, 0.10191082802547771, 0.37579617834394907, 0.13694267515923567, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.08598726114649681, 0.08598726114649681, 0.08598726114649681, 0.08598726114649681, 0.08598726114649681, 0.08598726114649681, 0.08280254777070063, 0.07961783439490445, 0.07961783439490445, 0.07961783439490445, 0.08280254777070063, 0.08280254777070063, 0.1178343949044586, 0.2770700636942675, 0.3057324840764331, 0.34076433121019106, 0.8248407643312102, 0.89171974522293, 0.9140127388535032, 0.856687898089172, 0.7898089171974523, 0.7292993630573248, 0.13694267515923567, 0.11464968152866242, 0.10828025477707007, 0.09872611464968153, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.09235668789808917, 0.2802547770700637, 0.3057324840764331, 0.40764331210191085, 0.4140127388535032, 0.4745222929936306, 0.5668789808917197, 0.6305732484076433, 0.7229299363057324, 0.697452229299363, 0.7770700636942676, 0.7929936305732485, 0.8184713375796179, 0.8439490445859873, 0.8630573248407644, 0.8789808917197452, 0.9044585987261147, 0.9203821656050956, 0.9394904458598726, 0.9490445859872612, 0.9490445859872612, 0.945859872611465, 0.9363057324840764, 0.9140127388535032, 0.8885350318471338, 0.8662420382165605, 0.856687898089172, 0.8343949044585988, 0.8057324840764332, 0.7898089171974523, 0.767515923566879, 0.6624203821656051, 0.6019108280254777, 0.5509554140127388, 0.5191082802547771, 0.445859872611465, 0.3630573248407643, 0.2961783439490446, 0.25477707006369427, 0.18789808917197454, 0.18152866242038215, 0.14331210191082802, 0.12420382165605096, 0.11464968152866242, 0.10191082802547771, 0.09872611464968153, 0.09554140127388536, 0.09554140127388536, 0.09235668789808917, 0.08598726114649681, 0.08280254777070063, 0.08598726114649681, 0.08598726114649681, 0.08598726114649681, 0.08598726114649681, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.09235668789808917, 0.09554140127388536, 0.09554140127388536, 0.09872611464968153, 0.8343949044585988, 0.8503184713375797, 0.8980891719745223, 0.9171974522292994, 0.9363057324840764, 0.9490445859872612, 0.9331210191082803, 0.910828025477707, 0.89171974522293, 0.8407643312101911, 0.8312101910828026, 0.4872611464968153, 0.8184713375796179, 0.8439490445859873, 0.8821656050955414, 0.910828025477707, 0.9203821656050956, 0.9331210191082803, 0.9426751592356688, 0.9299363057324841, 0.9140127388535032, 0.9012738853503185, 0.8662420382165605, 0.8312101910828026, 0.8057324840764332, 0.5159235668789809, 0.3630573248407643, 0.32802547770700635, 0.09554140127388536, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.10191082802547771, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.09872611464968153, 0.8057324840764332, 0.9140127388535032, 0.8885350318471338, 0.7133757961783439, 0.2770700636942675, 0.25796178343949044, 0.1751592356687898, 0.15286624203821655, 0.15286624203821655, 0.1624203821656051, 0.17834394904458598, 0.27070063694267515, 0.2611464968152866, 0.321656050955414, 0.35987261146496813, 0.39490445859872614, 0.46178343949044587, 0.5031847133757962, 0.554140127388535, 0.6210191082802548, 0.6528662420382165, 0.6815286624203821, 0.7197452229299363, 0.7993630573248408, 0.8726114649681529, 0.9140127388535032, 0.9490445859872612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vps16_C.gap.json b/pfam_gap_rates/Vps16_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a3d06a0fa71393a6660c9b9bac7e386f9e9b110
--- /dev/null
+++ b/pfam_gap_rates/Vps16_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vps16_N.gap.json b/pfam_gap_rates/Vps16_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..474ad3142884a419e420446955e7ba668091e573
--- /dev/null
+++ b/pfam_gap_rates/Vps16_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vps51.gap.json b/pfam_gap_rates/Vps51.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4b9bf422536d5a6cb8616a6fc1e1ba7a9ecfb9bb
--- /dev/null
+++ b/pfam_gap_rates/Vps51.gap.json
@@ -0,0 +1 @@
+{"family": "Vps51", "n_seqs": 828, "length": 86, "gap_rates": [0.6714975845410628, 0.4577294685990338, 0.39371980676328505, 0.3538647342995169, 0.32608695652173914, 0.29589371980676327, 0.2318840579710145, 0.20772946859903382, 0.18961352657004832, 0.1751207729468599, 0.1823671497584541, 0.16908212560386474, 0.15217391304347827, 0.3285024154589372, 0.3079710144927536, 0.28381642512077293, 0.2572463768115942, 0.07971014492753623, 0.05314009661835749, 0.051932367149758456, 0.042270531400966184, 0.036231884057971016, 0.033816425120772944, 0.03260869565217391, 0.03140096618357488, 0.027777777777777776, 0.01932367149758454, 0.018115942028985508, 0.012077294685990338, 0.010869565217391304, 0.00966183574879227, 0.007246376811594203, 0.007246376811594203, 0.008454106280193236, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.006038647342995169, 0.006038647342995169, 0.0012077294685990338, 0.0012077294685990338, 0.0012077294685990338, 0.0012077294685990338, 0.0024154589371980675, 0.0024154589371980675, 0.004830917874396135, 0.007246376811594203, 0.006038647342995169, 0.006038647342995169, 0.007246376811594203, 0.007246376811594203, 0.008454106280193236, 0.008454106280193236, 0.008454106280193236, 0.00966183574879227, 0.00966183574879227, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.014492753623188406, 0.020531400966183576, 0.022946859903381644, 0.026570048309178744, 0.036231884057971016, 0.04589371980676329, 0.05314009661835749, 0.05555555555555555, 0.059178743961352656, 0.06280193236714976, 0.06642512077294686, 0.07246376811594203, 0.07125603864734299, 0.07729468599033816, 0.08574879227053141, 0.0929951690821256, 0.09903381642512077, 0.10990338164251208, 0.12681159420289856, 0.15217391304347827, 0.20893719806763286, 0.3309178743961353, 0.4082125603864734, 0.5434782608695652, 0.7874396135265701], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vps8.gap.json b/pfam_gap_rates/Vps8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b51ed80b6ff7f3678cef7c30017e9825fdb55938
--- /dev/null
+++ b/pfam_gap_rates/Vps8.gap.json
@@ -0,0 +1 @@
+{"family": "Vps8", "n_seqs": 303, "length": 225, "gap_rates": [0.2871287128712871, 0.1254125412541254, 0.10561056105610561, 0.10561056105610561, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.0924092409240924, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.08250825082508251, 0.07920792079207921, 0.07590759075907591, 0.07590759075907591, 0.07590759075907591, 0.07260726072607261, 0.07260726072607261, 0.07260726072607261, 0.07260726072607261, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.066006600660066, 0.07260726072607261, 0.066006600660066, 0.06930693069306931, 0.07260726072607261, 0.08250825082508251, 0.08250825082508251, 0.066006600660066, 0.04950495049504951, 0.052805280528052806, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.0462046204620462, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.052805280528052806, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.0462046204620462, 0.0429042904290429, 0.039603960396039604, 0.036303630363036306, 0.0429042904290429, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.0462046204620462, 0.036303630363036306, 0.039603960396039604, 0.0462046204620462, 0.039603960396039604, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.033003300330033, 0.036303630363036306, 0.039603960396039604, 0.039603960396039604, 0.0429042904290429, 0.0429042904290429, 0.49504950495049505, 0.5775577557755776, 0.6666666666666666, 0.7260726072607261, 0.7755775577557755, 0.834983498349835, 0.8481848184818482, 0.8844884488448845, 0.9108910891089109, 0.9273927392739274, 0.933993399339934, 0.9372937293729373, 0.9471947194719472, 0.9438943894389439, 0.933993399339934, 0.9306930693069307, 0.9141914191419142, 0.9075907590759076, 0.858085808580858, 0.8415841584158416, 0.8184818481848185, 0.7623762376237624, 0.7095709570957096, 0.6138613861386139, 0.5412541254125413, 0.38943894389438943, 0.32673267326732675, 0.30363036303630364, 0.29372937293729373, 0.2838283828382838, 0.2739273927392739, 0.19141914191419143, 0.1716171617161716, 0.10231023102310231, 0.08250825082508251, 0.0627062706270627, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.052805280528052806, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.04950495049504951, 0.04950495049504951, 0.0462046204620462, 0.052805280528052806, 0.052805280528052806, 0.056105610561056105, 0.0627062706270627, 0.056105610561056105, 0.23432343234323433, 0.19801980198019803, 0.1485148514851485, 0.10231023102310231, 0.7788778877887789, 0.0891089108910891, 0.08250825082508251, 0.08250825082508251, 0.08250825082508251, 0.09570957095709572, 0.09570957095709572, 0.0924092409240924, 0.08250825082508251, 0.08250825082508251, 0.08250825082508251, 0.08250825082508251, 0.08250825082508251, 0.08250825082508251, 0.08250825082508251, 0.0891089108910891, 0.0891089108910891, 0.0858085808580858, 0.0858085808580858, 0.10561056105610561, 0.10891089108910891, 0.132013201320132, 0.3927392739273927, 0.44884488448844884, 0.46864686468646866, 0.46204620462046203, 0.4884488448844885, 0.5478547854785478, 0.5544554455445545, 0.5676567656765676, 0.5643564356435643, 0.6633663366336634, 0.8844884488448845, 0.8613861386138614, 0.636963696369637, 0.4752475247524752, 0.43234323432343236, 0.264026402640264, 0.22442244224422442, 0.19141914191419143, 0.17491749174917492, 0.1716171617161716, 0.1716171617161716, 0.16831683168316833, 0.15841584158415842, 0.1551155115511551, 0.1551155115511551, 0.1551155115511551, 0.1551155115511551, 0.1551155115511551, 0.1551155115511551, 0.1551155115511551, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.1617161716171617, 0.1617161716171617, 0.1617161716171617, 0.1617161716171617, 0.1617161716171617, 0.1617161716171617, 0.16501650165016502, 0.16831683168316833, 0.16831683168316833, 0.1716171617161716, 0.20462046204620463, 0.24092409240924093, 0.2739273927392739, 0.29372937293729373], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WAK_assoc.gap.json b/pfam_gap_rates/WAK_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..510682da49cd9a8c0715ed7c8c440de5dc03c8ee
--- /dev/null
+++ b/pfam_gap_rates/WAK_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "WAK_assoc", "n_seqs": 479, "length": 113, "gap_rates": [0.8810020876826722, 0.8810020876826722, 0.8851774530271399, 0.8851774530271399, 0.906054279749478, 0.906054279749478, 0.9373695198329853, 0.8225469728601252, 0.8058455114822547, 0.778705636743215, 0.7599164926931107, 0.7473903966597077, 0.7432150313152401, 0.7265135699373695, 0.7202505219206681, 0.7306889352818372, 0.7056367432150313, 0.7077244258872651, 0.7014613778705637, 0.7118997912317327, 0.7223382045929019, 0.6951983298538622, 0.6847599164926931, 0.6722338204592901, 0.7515657620041754, 0.6430062630480167, 0.5741127348643006, 0.5052192066805845, 0.4718162839248434, 0.37995824634655534, 0.31941544885177453, 0.2651356993736952, 0.2254697286012526, 0.20668058455114824, 0.2045929018789144, 0.2588726513569937, 0.21085594989561587, 0.20041753653444677, 0.302713987473904, 0.19206680584551147, 0.18789144050104384, 0.18997912317327767, 0.2797494780793319, 0.2964509394572025, 0.3277661795407098, 0.36116910229645094, 0.4384133611691023, 0.4175365344467641, 0.38204592901878914, 0.40083507306889354, 0.3883089770354906, 0.33820459290187893, 0.2985386221294363, 0.8997912317327766, 0.9478079331941545, 0.9331941544885177, 0.8496868475991649, 0.24843423799582465, 0.16701461377870563, 0.1022964509394572, 0.08768267223382047, 0.081419624217119, 0.07724425887265135, 0.07933194154488518, 0.0709812108559499, 0.06889352818371608, 0.06263048016701461, 0.060542797494780795, 0.060542797494780795, 0.020876826722338204, 0.018789144050104383, 0.018789144050104383, 0.018789144050104383, 0.020876826722338204, 0.016701461377870562, 0.020876826722338204, 0.9352818371607515, 0.7369519832985386, 0.3757828810020877, 0.20250521920668058, 0.022964509394572025, 0.006263048016701462, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.006263048016701462, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.008350730688935281, 0.9227557411273486, 0.054279749478079335, 0.9018789144050104, 0.15866388308977036, 0.9436325678496869, 0.025052192066805846, 0.018789144050104383, 0.020876826722338204, 0.027139874739039668, 0.029227557411273485, 0.031315240083507306, 0.031315240083507306, 0.04801670146137787, 0.10438413361169102, 0.13569937369519833, 0.21711899791231734, 0.5219206680584552], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WASH-7_mid.gap.json b/pfam_gap_rates/WASH-7_mid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f6ae9b3d5ff2bc78a366ddb6939179ad58bd0e6
--- /dev/null
+++ b/pfam_gap_rates/WASH-7_mid.gap.json
@@ -0,0 +1 @@
+{"family": "WASH-7_mid", "n_seqs": 136, "length": 361, "gap_rates": [0.4485294117647059, 0.3235294117647059, 0.3235294117647059, 0.3161764705882353, 0.3161764705882353, 0.3161764705882353, 0.9117647058823529, 0.3161764705882353, 0.3161764705882353, 0.3235294117647059, 0.3235294117647059, 0.3235294117647059, 0.3235294117647059, 0.3088235294117647, 0.3088235294117647, 0.3014705882352941, 0.29411764705882354, 0.2867647058823529, 0.2867647058823529, 0.2867647058823529, 0.3235294117647059, 0.33088235294117646, 0.2867647058823529, 0.27941176470588236, 0.25735294117647056, 0.25, 0.2426470588235294, 0.25, 0.2426470588235294, 0.2426470588235294, 0.23529411764705882, 0.23529411764705882, 0.23529411764705882, 0.23529411764705882, 0.22794117647058823, 0.22794117647058823, 0.22794117647058823, 0.22794117647058823, 0.27205882352941174, 0.3088235294117647, 0.3161764705882353, 0.3235294117647059, 0.3235294117647059, 0.3235294117647059, 0.38235294117647056, 0.38235294117647056, 0.35294117647058826, 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\ No newline at end of file
diff --git a/pfam_gap_rates/WD-3.gap.json b/pfam_gap_rates/WD-3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbcd0033f286a0608900508c242feaf234473c8c
--- /dev/null
+++ b/pfam_gap_rates/WD-3.gap.json
@@ -0,0 +1 @@
+{"family": "WD-3", "n_seqs": 120, "length": 313, "gap_rates": [0.85, 0.7333333333333333, 0.725, 0.675, 0.6333333333333333, 0.625, 0.6166666666666667, 0.6166666666666667, 0.6166666666666667, 0.6166666666666667, 0.6166666666666667, 0.6166666666666667, 0.6416666666666667, 0.6166666666666667, 0.6083333333333333, 0.5916666666666667, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.575, 0.5583333333333333, 0.55, 0.5416666666666666, 0.5333333333333333, 0.5333333333333333, 0.525, 0.5083333333333333, 0.5083333333333333, 0.5166666666666667, 0.525, 0.925, 0.9416666666666667, 0.9083333333333333, 0.5166666666666667, 0.55, 0.5416666666666666, 0.5333333333333333, 0.5166666666666667, 0.9333333333333333, 0.95, 0.9, 0.5166666666666667, 0.49166666666666664, 0.49166666666666664, 0.5083333333333333, 0.5083333333333333, 0.49166666666666664, 0.5, 0.49166666666666664, 0.48333333333333334, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.48333333333333334, 0.9416666666666667, 0.925, 0.4666666666666667, 0.4666666666666667, 0.475, 0.475, 0.475, 0.475, 0.49166666666666664, 0.48333333333333334, 0.5, 0.49166666666666664, 0.48333333333333334, 0.45, 0.44166666666666665, 0.44166666666666665, 0.44166666666666665, 0.44166666666666665, 0.44166666666666665, 0.44166666666666665, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.625, 0.6083333333333333, 0.44166666666666665, 0.44166666666666665, 0.4583333333333333, 0.45, 0.44166666666666665, 0.44166666666666665, 0.425, 0.4666666666666667, 0.5166666666666667, 0.49166666666666664, 0.45, 0.8583333333333333, 0.9083333333333333, 0.95, 0.9083333333333333, 0.9, 0.675, 0.4166666666666667, 0.2916666666666667, 0.2833333333333333, 0.2833333333333333, 0.275, 0.275, 0.275, 0.275, 0.275, 0.275, 0.275, 0.275, 0.26666666666666666, 0.275, 0.275, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.24166666666666667, 0.2916666666666667, 0.275, 0.225, 0.20833333333333334, 0.20833333333333334, 0.2, 0.2, 0.19166666666666668, 0.18333333333333332, 0.18333333333333332, 0.175, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.175, 0.175, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.25, 0.2, 0.2, 0.19166666666666668, 0.19166666666666668, 0.15833333333333333, 0.15, 0.15, 0.15833333333333333, 0.15, 0.15, 0.15, 0.275, 0.24166666666666667, 0.2, 0.20833333333333334, 0.175, 0.9416666666666667, 0.9083333333333333, 0.15, 0.175, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15833333333333333, 0.16666666666666666, 0.16666666666666666, 0.175, 0.18333333333333332, 0.2, 0.19166666666666668, 0.2, 0.2, 0.2, 0.8916666666666667, 0.9333333333333333, 0.9416666666666667, 0.9416666666666667, 0.925, 0.7916666666666666, 0.675, 0.24166666666666667, 0.21666666666666667, 0.16666666666666666, 0.16666666666666666, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15, 0.15, 0.15, 0.14166666666666666, 0.14166666666666666, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.11666666666666667, 0.125, 0.13333333333333333, 0.14166666666666666, 0.13333333333333333, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.11666666666666667, 0.125, 0.13333333333333333, 0.15, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.9333333333333333, 0.15833333333333333, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.15833333333333333, 0.16666666666666666, 0.16666666666666666, 0.15833333333333333, 0.18333333333333332, 0.8833333333333333, 0.15833333333333333, 0.16666666666666666, 0.175, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.175, 0.175, 0.2, 0.2, 0.19166666666666668, 0.175, 0.175, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.20833333333333334, 0.21666666666666667, 0.9166666666666666, 0.2, 0.2, 0.19166666666666668, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.225, 0.24166666666666667, 0.8916666666666667, 0.275, 0.2833333333333333, 0.30833333333333335, 0.4, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WD40_3.gap.json b/pfam_gap_rates/WD40_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79a80869076af83a08d03536c2a5a2e809baf61b
--- /dev/null
+++ b/pfam_gap_rates/WD40_3.gap.json
@@ -0,0 +1 @@
+{"family": "WD40_3", "n_seqs": 112, "length": 61, "gap_rates": [0.32142857142857145, 0.20535714285714285, 0.11607142857142858, 0.08035714285714286, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.9464285714285714, 0.9285714285714286, 0.008928571428571428, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017857142857142856, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.0, 0.0, 0.017857142857142856, 0.026785714285714284, 0.03571428571428571, 0.044642857142857144, 0.05357142857142857, 0.07142857142857142, 0.8928571428571429, 0.8839285714285714, 0.07142857142857142, 0.05357142857142857, 0.0625, 0.0625, 0.07142857142857142, 0.07142857142857142, 0.08928571428571429], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WHEP-TRS.gap.json b/pfam_gap_rates/WHEP-TRS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91981b030c231d87c366a8aeff9b14caf3a55b1e
--- /dev/null
+++ b/pfam_gap_rates/WHEP-TRS.gap.json
@@ -0,0 +1 @@
+{"family": "WHEP-TRS", "n_seqs": 653, "length": 54, "gap_rates": [0.31393568147013784, 0.23124042879019907, 0.11332312404287902, 0.05819295558958652, 0.033690658499234305, 0.02450229709035222, 0.022970903522205207, 0.01225114854517611, 0.01225114854517611, 0.01225114854517611, 0.007656967840735069, 0.007656967840735069, 0.007656967840735069, 0.007656967840735069, 0.007656967840735069, 0.007656967840735069, 0.006125574272588055, 0.026033690658499236, 0.009188361408882083, 0.9188361408882083, 0.02450229709035222, 0.019908116385911178, 0.015313935681470138, 0.006125574272588055, 0.004594180704441042, 0.0030627871362940277, 0.0030627871362940277, 0.0015313935681470138, 0.0015313935681470138, 0.0030627871362940277, 0.0030627871362940277, 0.0030627871362940277, 0.0030627871362940277, 0.0030627871362940277, 0.004594180704441042, 0.004594180704441042, 0.004594180704441042, 0.004594180704441042, 0.009188361408882083, 0.019908116385911178, 0.030627871362940276, 0.06738131699846861, 0.09647779479326186, 0.12404287901990811, 0.29555895865237364, 0.2557427258805513, 0.29249617151607965, 0.32618683001531396, 0.3430321592649311, 0.3660030627871363, 0.41500765696784075, 0.5222052067381318, 0.7013782542113323, 0.8162327718223583], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WYL.gap.json b/pfam_gap_rates/WYL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91916ee9d38ac521169b0c149e6fd01108046d9b
--- /dev/null
+++ b/pfam_gap_rates/WYL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Wbp11.gap.json b/pfam_gap_rates/Wbp11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c59ec544d7d6c836d8e0023e1617cfb58ec4a95
--- /dev/null
+++ b/pfam_gap_rates/Wbp11.gap.json
@@ -0,0 +1 @@
+{"family": "Wbp11", "n_seqs": 269, "length": 84, "gap_rates": [0.2899628252788104, 0.16356877323420074, 0.14869888475836432, 0.11895910780669144, 0.09293680297397769, 0.08550185873605948, 0.06691449814126393, 0.06319702602230483, 0.055762081784386616, 0.05947955390334572, 0.05947955390334572, 0.055762081784386616, 0.05204460966542751, 0.048327137546468404, 0.048327137546468404, 0.05204460966542751, 0.040892193308550186, 0.040892193308550186, 0.03717472118959108, 0.03717472118959108, 0.03717472118959108, 0.026022304832713755, 0.01858736059479554, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01858736059479554, 0.01486988847583643, 0.01858736059479554, 0.01486988847583643, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01858736059479554, 0.022304832713754646, 0.022304832713754646, 0.09665427509293681, 0.1412639405204461, 0.1412639405204461, 0.07063197026022305, 0.04460966542750929, 0.04460966542750929, 0.04460966542750929, 0.7509293680297398, 0.05947955390334572, 0.07434944237918216, 0.06691449814126393, 0.06319702602230483, 0.06319702602230483, 0.7323420074349443, 0.7323420074349443, 0.7769516728624535, 0.7323420074349443, 0.7286245353159851, 0.06319702602230483, 0.06691449814126393, 0.07063197026022305, 0.07063197026022305, 0.07063197026022305, 0.07434944237918216, 0.07806691449814127, 0.08178438661710037, 0.08550185873605948, 0.09293680297397769, 0.10037174721189591, 0.11524163568773234, 0.1449814126394052, 0.17100371747211895, 0.20817843866171004, 0.37174721189591076, 0.620817843866171], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WxL.gap.json b/pfam_gap_rates/WxL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb58b014b83d0a5dc6e43aa11edab59434c3fefc
--- /dev/null
+++ b/pfam_gap_rates/WxL.gap.json
@@ -0,0 +1 @@
+{"family": "WxL", "n_seqs": 330, "length": 288, "gap_rates": [0.8484848484848485, 0.6727272727272727, 0.5575757575757576, 0.5060606060606061, 0.4636363636363636, 0.46060606060606063, 0.45454545454545453, 0.44545454545454544, 0.44545454545454544, 0.4393939393939394, 0.43636363636363634, 0.43636363636363634, 0.43333333333333335, 0.4303030303030303, 0.4303030303030303, 0.4303030303030303, 0.4303030303030303, 0.4636363636363636, 0.906060606060606, 0.9242424242424242, 0.8454545454545455, 0.41818181818181815, 0.41818181818181815, 0.41818181818181815, 0.4121212121212121, 0.9393939393939394, 0.43636363636363634, 0.41818181818181815, 0.4, 0.3939393939393939, 0.3939393939393939, 0.39090909090909093, 0.6484848484848484, 0.6787878787878788, 0.7484848484848485, 0.8666666666666667, 0.8757575757575757, 0.7909090909090909, 0.7363636363636363, 0.6696969696969697, 0.5787878787878787, 0.5181818181818182, 0.5363636363636364, 0.503030303030303, 0.47878787878787876, 0.41818181818181815, 0.6515151515151515, 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\ No newline at end of file
diff --git a/pfam_gap_rates/XPC-binding.gap.json b/pfam_gap_rates/XPC-binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8ba77eacab0021a9206a961f15ef48116b41cb5
--- /dev/null
+++ b/pfam_gap_rates/XPC-binding.gap.json
@@ -0,0 +1 @@
+{"family": "XPC-binding", "n_seqs": 424, "length": 56, "gap_rates": [0.2641509433962264, 0.19103773584905662, 0.15330188679245282, 0.11556603773584906, 0.11320754716981132, 0.09905660377358491, 0.08490566037735849, 0.0660377358490566, 0.05660377358490566, 0.04009433962264151, 0.030660377358490566, 0.02358490566037736, 0.018867924528301886, 0.018867924528301886, 0.025943396226415096, 0.01179245283018868, 0.009433962264150943, 0.007075471698113208, 0.007075471698113208, 0.0047169811320754715, 0.007075471698113208, 0.009433962264150943, 0.02358490566037736, 0.02122641509433962, 0.014150943396226415, 0.0023584905660377358, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0047169811320754715, 0.0047169811320754715, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.01179245283018868, 0.01179245283018868, 0.014150943396226415, 0.01650943396226415, 0.01650943396226415, 0.01650943396226415, 0.01650943396226415, 0.01650943396226415, 0.01650943396226415, 0.03773584905660377, 0.08962264150943396, 0.21226415094339623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XRCC4.gap.json b/pfam_gap_rates/XRCC4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73cd9993e1dbb36ea6d1352975dc1d99d22ba686
--- /dev/null
+++ b/pfam_gap_rates/XRCC4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Xlink.gap.json b/pfam_gap_rates/Xlink.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e86d9d789a3282f315ce11e2b92dd93b4c3c0d1
--- /dev/null
+++ b/pfam_gap_rates/Xlink.gap.json
@@ -0,0 +1 @@
+{"family": "Xlink", "n_seqs": 459, "length": 104, "gap_rates": [0.8910675381263616, 0.22440087145969498, 0.20915032679738563, 0.20697167755991286, 0.2047930283224401, 0.19825708061002179, 0.19389978213507625, 0.17429193899782136, 0.16122004357298475, 0.4466230936819172, 0.37037037037037035, 0.3028322440087146, 0.034858387799564274, 0.026143790849673203, 0.026143790849673203, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.023965141612200435, 0.02178649237472767, 0.02178649237472767, 0.02178649237472767, 0.0196078431372549, 0.0196078431372549, 0.017429193899782137, 0.017429193899782137, 0.017429193899782137, 0.017429193899782137, 0.015250544662309368, 0.015250544662309368, 0.015250544662309368, 0.015250544662309368, 0.015250544662309368, 0.015250544662309368, 0.015250544662309368, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.8257080610021786, 0.015250544662309368, 0.015250544662309368, 0.015250544662309368, 0.015250544662309368, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.015250544662309368, 0.010893246187363835, 0.04357298474945534, 0.010893246187363835, 0.008714596949891068, 0.006535947712418301, 0.004357298474945534, 0.013071895424836602, 0.006535947712418301, 0.008714596949891068, 0.006535947712418301, 0.010893246187363835, 0.015250544662309368, 0.030501089324618737, 0.034858387799564274, 0.032679738562091505, 0.034858387799564274, 0.037037037037037035, 0.054466230936819175, 0.0457516339869281, 0.6514161220043573, 0.7843137254901961, 0.599128540305011, 0.034858387799564274, 0.037037037037037035, 0.04139433551198257, 0.06100217864923747, 0.12636165577342048, 0.7995642701525054, 0.8061002178649237, 0.8061002178649237, 0.8061002178649237, 0.8061002178649237, 0.803921568627451, 0.7995642701525054, 0.10457516339869281, 0.07625272331154684, 0.06535947712418301, 0.06100217864923747, 0.06100217864923747, 0.05228758169934641, 0.06535947712418301, 0.5076252723311547, 0.06100217864923747, 0.0457516339869281, 0.0457516339869281, 0.04793028322440087, 0.04793028322440087, 0.04793028322440087, 0.05010893246187364, 0.1111111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Y1_Tnp.gap.json b/pfam_gap_rates/Y1_Tnp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a54233222c2721a400dd97f49de9fc98342b44f4
--- /dev/null
+++ b/pfam_gap_rates/Y1_Tnp.gap.json
@@ -0,0 +1 @@
+{"family": "Y1_Tnp", "n_seqs": 3148, "length": 125, "gap_rates": [0.9304320203303685, 0.7252223634053367, 0.6483481575603558, 0.5686149936467598, 0.4809402795425667, 0.40756035578144856, 0.39421855146124524, 0.3808767471410419, 0.3700762388818297, 0.3630876747141042, 0.35673443456162646, 0.35101651842439646, 0.346569250317662, 0.34243964421855144, 0.3405336721728081, 0.335133418043202, 0.3303684879288437, 0.3227445997458704, 0.3119440914866582, 0.3071791613722999, 0.30209656925031764, 0.30304955527318933, 0.6861499364675985, 0.29193138500635324, 0.2843074968233799, 0.2738246505717916, 0.2687420584498094, 0.26207115628970773, 0.25285895806861497, 0.24809402795425667, 0.24364675984752224, 0.23983481575603557, 0.24015247776365947, 0.22776365946632782, 0.21759847522236342, 0.20552731893265566, 0.190279542566709, 0.16867852604828462, 0.14644218551461244, 0.12738246505717915, 0.10038119440914867, 0.09529860228716645, 0.0911689961880559, 0.08799237611181703, 0.0860864040660737, 0.08449809402795426, 0.08418043202033036, 0.08322744599745871, 0.07179161372299873, 0.07147395171537484, 0.07115628970775095, 0.07115628970775095, 0.07052096569250317, 0.07083862770012707, 0.06480304955527319, 0.06321473951715374, 0.06385006353240152, 0.06607369758576874, 0.06829733163913596, 0.06575603557814486, 0.07115628970775095, 0.06639135959339262, 0.06289707750952986, 0.934561626429479, 0.16836086404066072, 0.05559085133418043, 0.054637865311308764, 0.05590851334180432, 0.05590851334180432, 0.05622617534942821, 0.05972045743329098, 0.06162642947903431, 0.06162642947903431, 0.06512071156289707, 0.06639135959339262, 0.0670266836086404, 0.07083862770012707, 0.07020330368487929, 0.07020330368487929, 0.07052096569250317, 0.06162642947903431, 0.06385006353240152, 0.5644853875476493, 0.5530495552731893, 0.5050825921219823, 0.5044472681067345, 0.4618805590851334, 0.39358322744599744, 0.3548284625158831, 0.30813214739517153, 0.12928843710292248, 0.22490470139771285, 0.2503176620076239, 0.24237611181702667, 0.4815756035578145, 0.770012706480305, 0.20044472681067343, 0.1801143583227446, 0.1639135959339263, 0.10641677255400254, 0.11054637865311309, 0.11149936467598476, 0.1156289707750953, 0.11689961880559085, 0.11975857687420584, 0.12229987293519695, 0.12388818297331639, 0.12674714104193138, 0.12928843710292248, 0.13246505717916138, 0.14104193138500634, 0.2468233799237611, 0.5327191867852605, 0.1616899618805591, 0.16613722998729352, 0.1693138500635324, 0.17058449809402795, 0.17249047013977128, 0.17376111817026685, 0.17566709021601015, 0.17693773824650572, 0.18424396442185514, 0.2153748411689962, 0.454574332909784, 0.5400254129606099], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YSIRK_signal.gap.json b/pfam_gap_rates/YSIRK_signal.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1eb1d3fe3cbb58a74eaabee0d33113fb96fa1f1a
--- /dev/null
+++ b/pfam_gap_rates/YSIRK_signal.gap.json
@@ -0,0 +1 @@
+{"family": "YSIRK_signal", "n_seqs": 199, "length": 26, "gap_rates": [0.4824120603015075, 0.24623115577889448, 0.12562814070351758, 0.04020100502512563, 0.005025125628140704, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01507537688442211, 0.03015075376884422, 0.08040201005025126, 0.23115577889447236, 0.4271356783919598], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YbbR.gap.json b/pfam_gap_rates/YbbR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b356765839930e8d9e8f633e0263b292f03659df
--- /dev/null
+++ b/pfam_gap_rates/YbbR.gap.json
@@ -0,0 +1 @@
+{"family": "YbbR", "n_seqs": 1666, "length": 96, "gap_rates": [0.5168067226890757, 0.3835534213685474, 0.29411764705882354, 0.7352941176470589, 0.45018007202881155, 0.41236494597839135, 0.3937575030012005, 0.3397358943577431, 0.1092436974789916, 0.09123649459783914, 0.07202881152460984, 0.06062424969987995, 0.05162064825930372, 0.04081632653061224, 0.035414165666266505, 0.028211284513805522, 0.18127250900360145, 0.03241296518607443, 0.025210084033613446, 0.03181272509003601, 0.0234093637454982, 0.02701080432172869, 0.05822328931572629, 0.013205282112845138, 0.006602641056422569, 0.001800720288115246, 0.0012004801920768306, 0.0006002400960384153, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004801920768307323, 0.0024009603841536613, 0.0012004801920768306, 0.9315726290516206, 0.9399759903961584, 0.9153661464585834, 0.001800720288115246, 0.001800720288115246, 0.0012004801920768306, 0.0, 0.0006002400960384153, 0.0, 0.0, 0.0012004801920768306, 0.005402160864345739, 0.006002400960384154, 0.9405762304921969, 0.6440576230492197, 0.4339735894357743, 0.001800720288115246, 0.001800720288115246, 0.004801920768307323, 0.0024009603841536613, 0.0024009603841536613, 0.005402160864345739, 0.004201680672268907, 0.6584633853541416, 0.9267707082833133, 0.7112845138055222, 0.5546218487394958, 0.006602641056422569, 0.013205282112845138, 0.015606242496998799, 0.013805522208883553, 0.014405762304921969, 0.016206482593037214, 0.02100840336134454, 0.022809123649459785, 0.05342136854741897, 0.03721488595438175, 0.04081632653061224, 0.04981992797118848, 0.06062424969987995, 0.07683073229291716, 0.08883553421368548, 0.10444177671068428, 0.12545018007202882, 0.148859543817527, 0.6752701080432173, 0.7767106842737095, 0.8967587034813925, 0.7881152460984394, 0.7262905162064826, 0.5822328931572629, 0.16506602641056423, 0.18967587034813926, 0.1998799519807923, 0.20768307322929172, 0.226890756302521, 0.2605042016806723, 0.34093637454981995, 0.4639855942376951], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YgbB.gap.json b/pfam_gap_rates/YgbB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bd9b5ef5959866156534cd4279e0685ef464d69
--- /dev/null
+++ b/pfam_gap_rates/YgbB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YidC_periplas.gap.json b/pfam_gap_rates/YidC_periplas.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de3a922f604d578c878646b8bc2e5b46aa79c13d
--- /dev/null
+++ b/pfam_gap_rates/YidC_periplas.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YjbR.gap.json b/pfam_gap_rates/YjbR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..661132cbcf7f499f4ed07232560bd1685a14d9f0
--- /dev/null
+++ b/pfam_gap_rates/YjbR.gap.json
@@ -0,0 +1 @@
+{"family": "YjbR", "n_seqs": 1029, "length": 118, "gap_rates": [0.4946550048590865, 0.2730806608357629, 0.17687074829931973, 0.12342079689018465, 0.08551992225461613, 0.06511175898931001, 0.056365403304178816, 0.047619047619047616, 0.04470359572400389, 0.042759961127308066, 0.04470359572400389, 0.038872691933916424, 0.8211856171039844, 0.05928085519922255, 0.5597667638483965, 0.11661807580174927, 0.06802721088435375, 0.3760932944606414, 0.25072886297376096, 0.22351797862001943, 0.019436345966958212, 0.01749271137026239, 0.042759961127308066, 0.03304178814382896, 0.8415937803692906, 0.8027210884353742, 0.014577259475218658, 0.9096209912536443, 0.892128279883382, 0.013605442176870748, 0.011661807580174927, 0.009718172983479106, 0.009718172983479106, 0.009718172983479106, 0.009718172983479106, 0.009718172983479106, 0.011661807580174927, 0.015549076773566569, 0.006802721088435374, 0.03498542274052478, 0.019436345966958212, 0.2585034013605442, 0.640427599611273, 0.7463556851311953, 0.7677356656948494, 0.783284742468416, 0.8163265306122449, 0.9271137026239067, 0.8056365403304179, 0.7735665694849369, 0.7570456754130224, 0.6948493683187561, 0.5510204081632653, 0.1729834791059281, 0.0029154518950437317, 0.0029154518950437317, 0.001943634596695821, 0.001943634596695821, 0.001943634596695821, 0.8882410106899903, 0.004859086491739553, 0.003887269193391642, 0.001943634596695821, 0.004859086491739553, 0.0029154518950437317, 0.003887269193391642, 0.0029154518950437317, 0.001943634596695821, 0.001943634596695821, 0.001943634596695821, 0.0009718172983479105, 0.0738581146744412, 0.1000971817298348, 0.019436345966958212, 0.6462585034013606, 0.08843537414965986, 0.0738581146744412, 0.004859086491739553, 0.004859086491739553, 0.001943634596695821, 0.9183673469387755, 0.9280855199222546, 0.8931000971817298, 0.0029154518950437317, 0.22254616132167152, 0.9407191448007775, 0.14480077745383868, 0.015549076773566569, 0.047619047619047616, 0.014577259475218658, 0.001943634596695821, 0.001943634596695821, 0.001943634596695821, 0.0029154518950437317, 0.9358600583090378, 0.9096209912536443, 0.004859086491739553, 0.07482993197278912, 0.03304178814382896, 0.029154518950437316, 0.858114674441205, 0.2555879494655005, 0.014577259475218658, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.007774538386783284, 0.007774538386783284, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.0369290573372206, 0.11564625850340136, 0.4936831875607386], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YjeF_N.gap.json b/pfam_gap_rates/YjeF_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2f454173d9c7bd00e65da19cc79e71073cf7305
--- /dev/null
+++ b/pfam_gap_rates/YjeF_N.gap.json
@@ -0,0 +1 @@
+{"family": "YjeF_N", "n_seqs": 2023, "length": 198, "gap_rates": [0.6376668314384577, 0.14483440434997527, 0.09194265941670786, 0.05437469105289174, 0.04992585269401879, 0.049431537320810674, 0.049431537320810674, 0.04893722194760257, 0.04893722194760257, 0.04844290657439446, 0.04844290657439446, 0.04794859120118636, 0.04695996045477014, 0.045477014335145824, 0.045477014335145824, 0.046465645081562035, 0.050914483440435, 0.05239742956005932, 0.05239742956005932, 0.7123084527928819, 0.8091942659416708, 0.888779041028176, 0.9060800790904597, 0.916955017301038, 0.944142362827484, 0.9125061789421651, 0.8991596638655462, 0.8304498269896193, 0.7775580820563519, 0.5210084033613446, 0.45575877409787446, 0.15867523479980228, 0.06821552150271873, 0.04745427582797825, 0.039545229856648545, 0.03559070687098369, 0.03559070687098369, 0.03559070687098369, 0.03509639149777558, 0.03509639149777558, 0.03509639149777558, 0.03460207612456748, 0.03460207612456748, 0.034107760751359364, 0.03213049925852694, 0.03163618388531883, 0.030153237765694514, 0.030153237765694514, 0.030153237765694514, 0.029658922392486405, 0.030153237765694514, 0.03064755313890262, 0.03064755313890262, 0.03064755313890262, 0.03064755313890262, 0.031141868512110725, 0.03064755313890262, 0.06772120612951063, 0.040533860603064756, 0.03608502224419179, 0.03559070687098369, 0.03509639149777558, 0.03460207612456748, 0.03460207612456748, 0.03509639149777558, 0.03460207612456748, 0.9342560553633218, 0.25902125556104794, 0.2674246169055858, 0.06969846762234305, 0.11468116658428078, 0.12061295106277806, 0.18487394957983194, 0.15768660405338605, 0.1300049431537321, 0.10528917449332674, 0.06475531389026198, 0.05388037567968364, 0.0514087988136431, 0.04992585269401879, 0.04992585269401879, 0.050914483440435, 0.049431537320810674, 0.05239742956005932, 0.0514087988136431, 0.0514087988136431, 0.04745427582797825, 0.049431537320810674, 0.06722689075630252, 0.06772120612951063, 0.061789421651013345, 0.04695996045477014, 0.045477014335145824, 0.044488383588729606, 0.0439940682155215, 0.09095402867029165, 0.13445378151260504, 0.09836875926841325, 0.06327236777063766, 0.05536332179930796, 0.06772120612951063, 0.12654473554127532, 0.1695501730103806, 0.37765694513099357, 0.5659911023232822, 0.5773603559070687, 0.5724172021749876, 0.578843302026693, 0.8086999505684627, 0.9174493326742462, 0.9461196243203164, 0.9298072170044488, 0.8813643104300544, 0.7701433514582303, 0.4384577360355907, 0.24666337123084528, 0.03509639149777558, 0.03163618388531883, 0.029658922392486405, 0.029658922392486405, 0.0291646070192783, 0.028670291646070194, 0.0291646070192783, 0.029658922392486405, 0.029658922392486405, 0.031141868512110725, 0.03163618388531883, 0.9485912011863569, 0.031141868512110725, 0.033119130004943154, 0.03213049925852694, 0.03064755313890262, 0.03064755313890262, 0.030153237765694514, 0.03064755313890262, 0.031141868512110725, 0.03905091448344043, 0.03608502224419179, 0.03806228373702422, 0.03855659911023233, 0.03806228373702422, 0.03905091448344043, 0.04152249134948097, 0.04745427582797825, 0.045477014335145824, 0.04745427582797825, 0.060800790904597134, 0.055857637172516066, 0.8576371725160653, 0.9179436480474543, 0.949085516559565, 0.9382105783489867, 0.8882847256549679, 0.8329214038556599, 0.06376668314384577, 0.0439940682155215, 0.03707365299060801, 0.033119130004943154, 0.03262481463173505, 0.03262481463173505, 0.03213049925852694, 0.03163618388531883, 0.03262481463173505, 0.03361344537815126, 0.037567968363816116, 0.052891744933267426, 0.0583292140385566, 0.06623826000988631, 0.06722689075630252, 0.06772120612951063, 0.087988136431043, 0.07217004448838359, 0.06920415224913495, 0.06623826000988631, 0.06673257538309442, 0.9045971329708354, 0.9134948096885813, 0.8769154720711814, 0.14384577360355907, 0.11566979733069699, 0.07217004448838359, 0.9436480474542758, 0.9189322787938705, 0.06426099851705389, 0.06673257538309442, 0.06327236777063766, 0.06327236777063766, 0.06376668314384577, 0.06426099851705389, 0.06426099851705389, 0.06475531389026198, 0.06475531389026198, 0.0657439446366782, 0.06870983687592684, 0.07217004448838359, 0.08353929807217005, 0.14236282748393475, 0.3391003460207612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YmdB.gap.json b/pfam_gap_rates/YmdB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..455994b41fa9d7679ae3077dcba6a1159999d5d9
--- /dev/null
+++ b/pfam_gap_rates/YmdB.gap.json
@@ -0,0 +1 @@
+{"family": "YmdB", "n_seqs": 804, "length": 260, "gap_rates": [0.1417910447761194, 0.06467661691542288, 0.05721393034825871, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03855721393034826, 0.036069651741293535, 0.036069651741293535, 0.036069651741293535, 0.03482587064676617, 0.03482587064676617, 0.03233830845771144, 0.03233830845771144, 0.033582089552238806, 0.02736318407960199, 0.02736318407960199, 0.02736318407960199, 0.028606965174129355, 0.028606965174129355, 0.029850746268656716, 0.028606965174129355, 0.02736318407960199, 0.04975124378109453, 0.048507462686567165, 0.026119402985074626, 0.026119402985074626, 0.026119402985074626, 0.026119402985074626, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.0472636815920398, 0.024875621890547265, 0.026119402985074626, 0.026119402985074626, 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\ No newline at end of file
diff --git a/pfam_gap_rates/YtkA.gap.json b/pfam_gap_rates/YtkA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ca52966d46787ed3014af0f262e1790cab5647a
--- /dev/null
+++ b/pfam_gap_rates/YtkA.gap.json
@@ -0,0 +1 @@
+{"family": "YtkA", "n_seqs": 336, "length": 97, "gap_rates": [0.8065476190476191, 0.6547619047619048, 0.5, 0.38095238095238093, 0.28869047619047616, 0.20833333333333334, 0.16964285714285715, 0.1488095238095238, 0.13392857142857142, 0.11607142857142858, 0.1130952380952381, 0.9345238095238095, 0.11904761904761904, 0.1130952380952381, 0.19642857142857142, 0.9315476190476191, 0.09523809523809523, 0.06547619047619048, 0.9285714285714286, 0.7678571428571429, 0.05654761904761905, 0.050595238095238096, 0.047619047619047616, 0.044642857142857144, 0.03869047619047619, 0.7291666666666666, 0.026785714285714284, 0.8839285714285714, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.9226190476190477, 0.023809523809523808, 0.8660714285714286, 0.5357142857142857, 0.023809523809523808, 0.023809523809523808, 0.026785714285714284, 0.044642857142857144, 0.03571428571428571, 0.03273809523809524, 0.020833333333333332, 0.020833333333333332, 0.017857142857142856, 0.03273809523809524, 0.023809523809523808, 0.011904761904761904, 0.6577380952380952, 0.002976190476190476, 0.002976190476190476, 0.002976190476190476, 0.002976190476190476, 0.002976190476190476, 0.002976190476190476, 0.0, 0.002976190476190476, 0.33630952380952384, 0.5238095238095238, 0.4642857142857143, 0.2708333333333333, 0.11904761904761904, 0.047619047619047616, 0.2261904761904762, 0.21428571428571427, 0.08928571428571429, 0.017857142857142856, 0.011904761904761904, 0.002976190476190476, 0.0, 0.002976190476190476, 0.005952380952380952, 0.02976190476190476, 0.8422619047619048, 0.16071428571428573, 0.026785714285714284, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8541666666666666, 0.0, 0.0, 0.0, 0.005952380952380952, 0.002976190476190476, 0.005952380952380952, 0.005952380952380952, 0.008928571428571428, 0.008928571428571428, 0.011904761904761904, 0.020833333333333332, 0.06547619047619048, 0.16964285714285715, 0.5773809523809523], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YvrJ.gap.json b/pfam_gap_rates/YvrJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69d4a992f71b158b390f05365c9b24c73bdcc75a
--- /dev/null
+++ b/pfam_gap_rates/YvrJ.gap.json
@@ -0,0 +1 @@
+{"family": "YvrJ", "n_seqs": 181, "length": 35, "gap_rates": [0.4585635359116022, 0.1270718232044199, 0.03867403314917127, 0.022099447513812154, 0.027624309392265192, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.011049723756906077, 0.011049723756906077, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.022099447513812154, 0.022099447513812154, 0.08839779005524862, 0.2265193370165746], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YwhD.gap.json b/pfam_gap_rates/YwhD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..206bcd7b6af9022ce93e9b86d1109d8cb31383b1
--- /dev/null
+++ b/pfam_gap_rates/YwhD.gap.json
@@ -0,0 +1 @@
+{"family": "YwhD", "n_seqs": 106, "length": 164, "gap_rates": [0.2641509433962264, 0.16981132075471697, 0.10377358490566038, 0.09433962264150944, 0.08490566037735849, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.10377358490566038, 0.19811320754716982, 0.29245283018867924, 0.22641509433962265, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.0660377358490566, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.330188679245283, 0.330188679245283, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9339622641509434, 0.8867924528301887, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009433962264150943, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02830188679245283, 0.018867924528301886, 0.02830188679245283, 0.05660377358490566, 0.0660377358490566, 0.27358490566037735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YycI.gap.json b/pfam_gap_rates/YycI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b30cab03afe79ddf2144efbdf26a6e4bf1c00d23
--- /dev/null
+++ b/pfam_gap_rates/YycI.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ZU5.gap.json b/pfam_gap_rates/ZU5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de12dff37090461f33ef99cfa24caa0d7b752647
--- /dev/null
+++ b/pfam_gap_rates/ZU5.gap.json
@@ -0,0 +1 @@
+{"family": "ZU5", "n_seqs": 805, "length": 103, "gap_rates": [0.5267080745341615, 0.422360248447205, 0.3490683229813665, 0.23354037267080746, 0.20869565217391303, 0.20124223602484473, 0.18881987577639753, 0.17142857142857143, 0.15403726708074533, 0.1391304347826087, 0.10434782608695652, 0.0968944099378882, 0.09937888198757763, 0.0906832298136646, 0.084472049689441, 0.7192546583850932, 0.11304347826086956, 0.08198757763975155, 0.06956521739130435, 0.06832298136645963, 0.06335403726708075, 0.06086956521739131, 0.06086956521739131, 0.05962732919254658, 0.06086956521739131, 0.06086956521739131, 0.05962732919254658, 0.058385093167701865, 0.058385093167701865, 0.05714285714285714, 0.12546583850931678, 0.1577639751552795, 0.10683229813664596, 0.0670807453416149, 0.062111801242236024, 0.06459627329192547, 0.06086956521739131, 0.05341614906832298, 0.2484472049689441, 0.11180124223602485, 0.0782608695652174, 0.06832298136645963, 0.055900621118012424, 0.0968944099378882, 0.22857142857142856, 0.1453416149068323, 0.06335403726708075, 0.7552795031055901, 0.04472049689440994, 0.02857142857142857, 0.03229813664596273, 0.02857142857142857, 0.01987577639751553, 0.018633540372670808, 0.02608695652173913, 0.9217391304347826, 0.8757763975155279, 0.02111801242236025, 0.01987577639751553, 0.02236024844720497, 0.02236024844720497, 0.02360248447204969, 0.02236024844720497, 0.02360248447204969, 0.02360248447204969, 0.02360248447204969, 0.02236024844720497, 0.02360248447204969, 0.02360248447204969, 0.02608695652173913, 0.0906832298136646, 0.043478260869565216, 0.02981366459627329, 0.02857142857142857, 0.02732919254658385, 0.03229813664596273, 0.03602484472049689, 0.04596273291925466, 0.04596273291925466, 0.04596273291925466, 0.04596273291925466, 0.0484472049689441, 0.05217391304347826, 0.13043478260869565, 0.15900621118012423, 0.1826086956521739, 0.8459627329192546, 0.20869565217391303, 0.21739130434782608, 0.22981366459627328, 0.9304347826086956, 0.23975155279503105, 0.2596273291925466, 0.337888198757764, 0.3987577639751553, 0.4248447204968944, 0.42857142857142855, 0.43850931677018634, 0.4434782608695652, 0.4546583850931677, 0.484472049689441, 0.5801242236024845, 0.7900621118012422], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ZZ.gap.json b/pfam_gap_rates/ZZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c5866e57c7d8647e93cbb7ea646349c1cbf4a61
--- /dev/null
+++ b/pfam_gap_rates/ZZ.gap.json
@@ -0,0 +1 @@
+{"family": "ZZ", "n_seqs": 2157, "length": 46, "gap_rates": [0.9174779786740844, 0.5248029670839128, 0.3866481223922114, 0.1942512749188688, 0.09225776541492814, 0.048678720445062586, 0.03616133518776078, 0.03523412146499768, 0.03477051460361613, 0.03337969401947149, 0.03337969401947149, 0.0315252665739453, 0.34214186369958277, 0.08669448307834957, 0.03337969401947149, 0.03477051460361613, 0.005563282336578581, 0.003245248029670839, 0.0018544274455261937, 0.0013908205841446453, 0.0, 0.0, 0.0, 0.0, 0.0004636068613815484, 0.0037088548910523874, 0.0009272137227630969, 0.0013908205841446453, 0.0018544274455261937, 0.0013908205841446453, 0.0018544274455261937, 0.0023180343069077423, 0.003245248029670839, 0.0037088548910523874, 0.004172461752433936, 0.03013444598980065, 0.08391284191006027, 0.4649976819656931, 0.33565136764024106, 0.2865090403337969, 0.3328697264719518, 0.3769123783031989, 0.45897079276773295, 0.4918868799258229, 0.7000463606861381, 0.8789986091794159], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zn_clus.gap.json b/pfam_gap_rates/Zn_clus.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..840b691789462486685c1e39455fb5fe5c539846
--- /dev/null
+++ b/pfam_gap_rates/Zn_clus.gap.json
@@ -0,0 +1 @@
+{"family": "Zn_clus", "n_seqs": 5000, "length": 46, "gap_rates": [0.5326, 0.0562, 0.0216, 0.0208, 0.0158, 0.0152, 0.011, 0.009, 0.006, 0.0038, 0.0016, 0.0006, 0.0, 0.0, 0.0004, 0.8728, 0.9196, 0.8368, 0.001, 0.0066, 0.0054, 0.3524, 0.9384, 0.921, 0.0002, 0.0004, 0.0006, 0.0008, 0.0008, 0.0016, 0.0044, 0.01, 0.88, 0.8548, 0.0182, 0.0258, 0.0268, 0.0364, 0.6136, 0.175, 0.2482, 0.355, 0.474, 0.582, 0.6818, 0.8038], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zn_peptidase.gap.json b/pfam_gap_rates/Zn_peptidase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5468cbf67cb5dd30884449e8483a2fe1af1a08c
--- /dev/null
+++ b/pfam_gap_rates/Zn_peptidase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Zot.gap.json b/pfam_gap_rates/Zot.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2004e90ec66acd7644e8d8c3a9491220f2b17d1
--- /dev/null
+++ b/pfam_gap_rates/Zot.gap.json
@@ -0,0 +1 @@
+{"family": "Zot", "n_seqs": 114, "length": 278, "gap_rates": [0.5964912280701754, 0.5263157894736842, 0.47368421052631576, 0.43859649122807015, 0.39473684210526316, 0.37719298245614036, 0.37719298245614036, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.37719298245614036, 0.37719298245614036, 0.3684210526315789, 0.6052631578947368, 0.38596491228070173, 0.3684210526315789, 0.3684210526315789, 0.9298245614035088, 0.9298245614035088, 0.9473684210526315, 0.9473684210526315, 0.9298245614035088, 0.9298245614035088, 0.9210526315789473, 0.38596491228070173, 0.37719298245614036, 0.39473684210526316, 0.37719298245614036, 0.9298245614035088, 0.9385964912280702, 0.9385964912280702, 0.9210526315789473, 0.3684210526315789, 0.35964912280701755, 0.35964912280701755, 0.35964912280701755, 0.35964912280701755, 0.38596491228070173, 0.9122807017543859, 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\ No newline at end of file
diff --git a/pfam_gap_rates/cEGF.gap.json b/pfam_gap_rates/cEGF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8252261ae177560dbb478ee47c08c37b0c9b7f9
--- /dev/null
+++ b/pfam_gap_rates/cEGF.gap.json
@@ -0,0 +1 @@
+{"family": "cEGF", "n_seqs": 1567, "length": 24, "gap_rates": [0.2188895979578813, 0.11359285258455648, 0.03446075303126994, 0.0012763241863433313, 0.0006381620931716656, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.11933631142310147, 0.1429483088704531, 0.013401403956604978, 0.0012763241863433313, 0.007019783024888321, 0.012763241863433313, 0.0006381620931716656, 0.0, 0.0025526483726866626, 0.014677728142948309, 0.01595405232929164, 0.01914486279514997, 0.029993618379068283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/dTDP_sugar_isom.gap.json b/pfam_gap_rates/dTDP_sugar_isom.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ed0013e05e0ed77c9df66892f42bccfb8806e71
--- /dev/null
+++ b/pfam_gap_rates/dTDP_sugar_isom.gap.json
@@ -0,0 +1 @@
+{"family": "dTDP_sugar_isom", "n_seqs": 1830, "length": 184, "gap_rates": [0.733879781420765, 0.2836065573770492, 0.1721311475409836, 0.07103825136612021, 0.06120218579234973, 0.05737704918032787, 0.05245901639344262, 0.04972677595628415, 0.048087431693989074, 0.04590163934426229, 0.04480874316939891, 0.04316939890710383, 0.04207650273224044, 0.03989071038251366, 0.03989071038251366, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03879781420765027, 0.03879781420765027, 0.03770491803278689, 0.03715846994535519, 0.034972677595628415, 0.034972677595628415, 0.034972677595628415, 0.03442622950819672, 0.03442622950819672, 0.036065573770491806, 0.03770491803278689, 0.040437158469945354, 0.05027322404371585, 0.05136612021857923, 0.06229508196721312, 0.06502732240437159, 0.7688524590163934, 0.07759562841530054, 0.07759562841530054, 0.0814207650273224, 0.09398907103825137, 0.9486338797814208, 0.05191256830601093, 0.03114754098360656, 0.026775956284153007, 0.025136612021857924, 0.024043715846994537, 0.02459016393442623, 0.023497267759562842, 0.022950819672131147, 0.023497267759562842, 0.022404371584699455, 0.7289617486338797, 0.02185792349726776, 0.020765027322404372, 0.020765027322404372, 0.020765027322404372, 0.019672131147540985, 0.019672131147540985, 0.01912568306010929, 0.017486338797814208, 0.018032786885245903, 0.020765027322404372, 0.022404371584699455, 0.14262295081967213, 0.15737704918032788, 0.47595628415300545, 0.16775956284153004, 0.07103825136612021, 0.017486338797814208, 0.015846994535519125, 0.015300546448087432, 0.016939890710382512, 0.01639344262295082, 0.015300546448087432, 0.015300546448087432, 0.014754098360655738, 0.014754098360655738, 0.014754098360655738, 0.01366120218579235, 0.013114754098360656, 0.012021857923497269, 0.012568306010928962, 0.012568306010928962, 0.011475409836065573, 0.012021857923497269, 0.01366120218579235, 0.01366120218579235, 0.014207650273224045, 0.014754098360655738, 0.015846994535519125, 0.048087431693989074, 0.018579234972677595, 0.017486338797814208, 0.016939890710382512, 0.01639344262295082, 0.014754098360655738, 0.015300546448087432, 0.015300546448087432, 0.014754098360655738, 0.015846994535519125, 0.014754098360655738, 0.014754098360655738, 0.014754098360655738, 0.06994535519125683, 0.06775956284153005, 0.014207650273224045, 0.014207650273224045, 0.01366120218579235, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.01366120218579235, 0.01366120218579235, 0.013114754098360656, 0.013114754098360656, 0.01366120218579235, 0.014207650273224045, 0.01366120218579235, 0.014207650273224045, 0.014754098360655738, 0.015300546448087432, 0.01639344262295082, 0.016939890710382512, 0.016939890710382512, 0.055191256830601096, 0.020218579234972677, 0.021311475409836064, 0.02185792349726776, 0.022404371584699455, 0.023497267759562842, 0.024043715846994537, 0.02459016393442623, 0.025136612021857924, 0.9497267759562842, 0.026775956284153007, 0.02896174863387978, 0.027868852459016394, 0.027868852459016394, 0.02896174863387978, 0.02896174863387978, 0.9497267759562842, 0.9256830601092896, 0.03224043715846994, 0.03934426229508197, 0.04316939890710383, 0.04644808743169399, 0.04918032786885246, 0.04972677595628415, 0.053551912568306013, 0.05628415300546448, 0.06885245901639345, 0.09234972677595628, 0.09453551912568306, 0.07650273224043716, 0.07540983606557378, 0.07486338797814207, 0.07486338797814207, 0.07540983606557378, 0.12950819672131147, 0.5519125683060109, 0.8967213114754098, 0.9316939890710383, 0.9459016393442623, 0.9120218579234972, 0.7972677595628416, 0.4027322404371585, 0.12568306010928962, 0.09617486338797815, 0.126775956284153, 0.12950819672131147, 0.12950819672131147, 0.12896174863387977, 0.12896174863387977, 0.12950819672131147, 0.13005464480874318, 0.13114754098360656, 0.13224043715846995, 0.1366120218579235, 0.1431693989071038, 0.15191256830601094, 0.1726775956284153, 0.2010928961748634, 0.37759562841530053, 0.7065573770491803], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/dUTPase.gap.json b/pfam_gap_rates/dUTPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d36ced0ccaae005076adfc611002c9995664dae
--- /dev/null
+++ b/pfam_gap_rates/dUTPase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/dsDNA_bind.gap.json b/pfam_gap_rates/dsDNA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b0b1298087c6b980e8bfe8627f59d890c8c40923
--- /dev/null
+++ b/pfam_gap_rates/dsDNA_bind.gap.json
@@ -0,0 +1 @@
+{"family": "dsDNA_bind", "n_seqs": 399, "length": 124, "gap_rates": [0.38345864661654133, 0.37844611528822053, 0.37343358395989973, 0.3684210526315789, 0.3583959899749373, 0.3283208020050125, 0.3233082706766917, 0.3032581453634085, 0.2882205513784461, 0.2681704260651629, 0.2656641604010025, 0.2581453634085213, 0.2581453634085213, 0.2631578947368421, 0.2631578947368421, 0.2882205513784461, 0.2907268170426065, 0.3132832080200501, 0.5338345864661654, 0.5263157894736842, 0.8395989974937343, 0.8872180451127819, 0.9323308270676691, 0.9448621553884712, 0.9022556390977443, 0.8696741854636592, 0.7919799498746867, 0.46365914786967416, 0.38596491228070173, 0.2957393483709273, 0.20050125313283207, 0.14786967418546365, 0.13283208020050125, 0.12030075187969924, 0.11278195488721804, 0.13784461152882205, 0.11528822055137844, 0.14786967418546365, 0.24310776942355888, 0.16040100250626566, 0.045112781954887216, 0.03759398496240601, 0.03759398496240601, 0.022556390977443608, 0.017543859649122806, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.007518796992481203, 0.007518796992481203, 0.010025062656641603, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.010025062656641603, 0.010025062656641603, 0.010025062656641603, 0.010025062656641603, 0.010025062656641603, 0.010025062656641603, 0.010025062656641603, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.012531328320802004, 0.017543859649122806, 0.017543859649122806, 0.020050125313283207, 0.022556390977443608, 0.02756892230576441, 0.02756892230576441, 0.020050125313283207, 0.020050125313283207, 0.02756892230576441, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03258145363408521, 0.03258145363408521, 0.03258145363408521, 0.03258145363408521, 0.03258145363408521, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.7268170426065163, 0.9323308270676691, 0.849624060150376, 0.38847117794486213, 0.042606516290726815, 0.08020050125313283, 0.07518796992481203, 0.09273182957393483, 0.9448621553884712, 0.9273182957393483, 0.08270676691729323, 0.09022556390977443, 0.09774436090225563, 0.19298245614035087, 0.2531328320802005, 0.2556390977443609, 0.3132832080200501, 0.37593984962406013], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/eIF-3c_N.gap.json b/pfam_gap_rates/eIF-3c_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..453b5c844581a992478d26baa8843149f8641999
--- /dev/null
+++ b/pfam_gap_rates/eIF-3c_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/eIF-4B.gap.json b/pfam_gap_rates/eIF-4B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6dcda5a85998bb3bbb7b2475ab69f1a7c824c01d
--- /dev/null
+++ b/pfam_gap_rates/eIF-4B.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/eIF3_p135.gap.json b/pfam_gap_rates/eIF3_p135.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10aa220a16129c85f242619bd155d8615aa2b030
--- /dev/null
+++ b/pfam_gap_rates/eIF3_p135.gap.json
@@ -0,0 +1 @@
+{"family": "eIF3_p135", "n_seqs": 544, "length": 234, "gap_rates": [0.45036764705882354, 0.3069852941176471, 0.28125, 0.23529411764705882, 0.22058823529411764, 0.2113970588235294, 0.20404411764705882, 0.13419117647058823, 0.0900735294117647, 0.08455882352941177, 0.07169117647058823, 0.06801470588235294, 0.0661764705882353, 0.06433823529411764, 0.06433823529411764, 0.06433823529411764, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.8970588235294118, 0.8988970588235294, 0.9025735294117647, 0.9117647058823529, 0.9227941176470589, 0.9246323529411765, 0.9338235294117647, 0.9393382352941176, 0.9485294117647058, 0.9485294117647058, 0.9448529411764706, 0.9393382352941176, 0.9301470588235294, 0.9227941176470589, 0.9191176470588235, 0.90625, 0.9025735294117647, 0.8970588235294118, 0.8970588235294118, 0.0661764705882353, 0.2867647058823529, 0.32169117647058826, 0.375, 0.41360294117647056, 0.5330882352941176, 0.5716911764705882, 0.6911764705882353, 0.5275735294117647, 0.38419117647058826, 0.21507352941176472, 0.17095588235294118, 0.10845588235294118, 0.09375, 0.0661764705882353, 0.0661764705882353, 0.06985294117647059, 0.06801470588235294, 0.0661764705882353, 0.0661764705882353, 0.0661764705882353, 0.0661764705882353, 0.0625, 0.0625, 0.06801470588235294, 0.06801470588235294, 0.07169117647058823, 0.07352941176470588, 0.07536764705882353, 0.07720588235294118, 0.07720588235294118, 0.07720588235294118, 0.08088235294117647, 0.08088235294117647, 0.08272058823529412, 0.08088235294117647, 0.08455882352941177, 0.08823529411764706, 0.8933823529411765, 0.9172794117647058, 0.9283088235294118, 0.9375, 0.9283088235294118, 0.9044117647058824, 0.8327205882352942, 0.12316176470588236, 0.13602941176470587, 0.13786764705882354, 0.9430147058823529, 0.15073529411764705, 0.9246323529411765, 0.16544117647058823, 0.17279411764705882, 0.1801470588235294, 0.18566176470588236, 0.18566176470588236, 0.18382352941176472, 0.18566176470588236, 0.18382352941176472, 0.19117647058823528, 0.18382352941176472, 0.18382352941176472, 0.1875, 0.18933823529411764, 0.18933823529411764, 0.1948529411764706, 0.19669117647058823, 0.19852941176470587, 0.21507352941176472, 0.22794117647058823, 0.24080882352941177, 0.3382352941176471, 0.9301470588235294, 0.9301470588235294, 0.9393382352941176, 0.9430147058823529, 0.9466911764705882, 0.9466911764705882, 0.9393382352941176, 0.9356617647058824, 0.9301470588235294, 0.9283088235294118, 0.39889705882352944, 0.47794117647058826, 0.4540441176470588, 0.43014705882352944, 0.4099264705882353, 0.39889705882352944, 0.40625, 0.43933823529411764, 0.4944852941176471, 0.47610294117647056, 0.45588235294117646, 0.4632352941176471, 0.4834558823529412, 0.5091911764705882, 0.7408088235294118, 0.7389705882352942, 0.7316176470588235, 0.7224264705882353, 0.5386029411764706, 0.5183823529411765, 0.5275735294117647, 0.5716911764705882, 0.7830882352941176, 0.7095588235294118, 0.7775735294117647, 0.7996323529411765, 0.8308823529411765, 0.8731617647058824, 0.8988970588235294, 0.9154411764705882, 0.9283088235294118, 0.9393382352941176, 0.9338235294117647, 0.9227941176470589, 0.90625, 0.8823529411764706, 0.8676470588235294, 0.8033088235294118, 0.7941176470588235, 0.7720588235294118, 0.6691176470588235, 0.65625, 0.5036764705882353, 0.4944852941176471, 0.49264705882352944, 0.4650735294117647, 0.4522058823529412, 0.4227941176470588, 0.40441176470588236, 0.4007352941176471, 0.3952205882352941, 0.36213235294117646, 0.3547794117647059, 0.3602941176470588, 0.3584558823529412, 0.34558823529411764, 0.34558823529411764, 0.34375, 0.34375, 0.34375, 0.34558823529411764, 0.3474264705882353, 0.3474264705882353, 0.3474264705882353, 0.3474264705882353, 0.3474264705882353, 0.34558823529411764, 0.34558823529411764, 0.3474264705882353, 0.3639705882352941, 0.3639705882352941, 0.3694852941176471, 0.36764705882352944, 0.37683823529411764, 0.7224264705882353, 0.7904411764705882, 0.8051470588235294, 0.8088235294117647, 0.7959558823529411, 0.7794117647058824, 0.38235294117647056, 0.35110294117647056, 0.3474264705882353, 0.3474264705882353, 0.3492647058823529, 0.3492647058823529, 0.3492647058823529, 0.3492647058823529, 0.3492647058823529, 0.3492647058823529, 0.3492647058823529, 0.3492647058823529, 0.3492647058823529, 0.3492647058823529, 0.35110294117647056, 0.3547794117647059, 0.3547794117647059, 0.35661764705882354, 0.36213235294117646, 0.36580882352941174, 0.36580882352941174, 0.3786764705882353, 0.38235294117647056, 0.38419117647058826, 0.3952205882352941, 0.5772058823529411], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/eRF1_3.gap.json b/pfam_gap_rates/eRF1_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac7413e9a3a9a63cb7057c04347d62b34627b317
--- /dev/null
+++ b/pfam_gap_rates/eRF1_3.gap.json
@@ -0,0 +1 @@
+{"family": "eRF1_3", "n_seqs": 954, "length": 142, "gap_rates": [0.480083857442348, 0.22117400419287211, 0.11635220125786164, 0.09433962264150944, 0.08071278825995808, 0.06918238993710692, 0.0660377358490566, 0.06079664570230608, 0.05555555555555555, 0.051362683438155136, 0.049266247379454925, 0.04821802935010482, 0.04716981132075472, 0.04821802935010482, 0.04612159329140461, 0.04507337526205451, 0.04612159329140461, 0.03459119496855346, 0.11844863731656184, 0.039832285115303984, 0.031446540880503145, 0.03039832285115304, 0.03039832285115304, 0.03039832285115304, 0.03039832285115304, 0.029350104821802937, 0.02620545073375262, 0.02410901467505241, 0.02410901467505241, 0.023060796645702306, 0.020964360587002098, 0.020964360587002098, 0.020964360587002098, 0.0220125786163522, 0.016771488469601678, 0.016771488469601678, 0.014675052410901468, 0.014675052410901468, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.014675052410901468, 0.014675052410901468, 0.014675052410901468, 0.014675052410901468, 0.014675052410901468, 0.014675052410901468, 0.015723270440251572, 0.015723270440251572, 0.019916142557651992, 0.03459119496855346, 0.07756813417190776, 0.10167714884696016, 0.649895178197065, 0.1090146750524109, 0.1069182389937107, 0.11006289308176101, 0.12473794549266247, 0.4947589098532495, 0.5083857442348009, 0.510482180293501, 0.5115303983228512, 0.5157232704402516, 0.519916142557652, 0.5356394129979035, 0.5408805031446541, 0.5440251572327044, 0.5576519916142557, 0.5828092243186582, 0.7033542976939203, 0.9423480083857443, 0.9182389937106918, 0.6205450733752621, 0.560796645702306, 0.5461215932914046, 0.5429769392033543, 0.5377358490566038, 0.5272536687631028, 0.5178197064989518, 0.5146750524109015, 0.510482180293501, 0.5094339622641509, 0.5083857442348009, 0.4947589098532495, 0.5052410901467506, 0.4947589098532495, 0.4769392033542977, 0.480083857442348, 0.4769392033542977, 0.47379454926624737, 0.4748427672955975, 0.47379454926624737, 0.4716981132075472, 0.4580712788259958, 0.5345911949685535, 0.9454926624737946, 0.539832285115304, 0.5094339622641509, 0.3920335429769392, 0.0429769392033543, 0.033542976939203356, 0.031446540880503145, 0.029350104821802937, 0.02830188679245283, 0.027253668763102725, 0.02830188679245283, 0.031446540880503145, 0.02830188679245283, 0.027253668763102725, 0.03039832285115304, 0.031446540880503145, 0.027253668763102725, 0.027253668763102725, 0.027253668763102725, 0.027253668763102725, 0.027253668763102725, 0.027253668763102725, 0.029350104821802937, 0.029350104821802937, 0.033542976939203356, 0.0429769392033543, 0.04612159329140461, 0.049266247379454925, 0.04821802935010482, 0.04507337526205451, 0.041928721174004195, 0.03668763102725367, 0.48742138364779874, 0.039832285115303984, 0.03773584905660377, 0.03773584905660377, 0.03878406708595388, 0.03878406708595388, 0.03878406708595388, 0.03878406708595388, 0.041928721174004195, 0.04821802935010482, 0.050314465408805034, 0.05450733752620545, 0.06289308176100629, 0.09224318658280922, 0.23689727463312368], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/fn3.gap.json b/pfam_gap_rates/fn3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e73abbe25e4c61c8890a2d07a832f05bbc845b2
--- /dev/null
+++ b/pfam_gap_rates/fn3.gap.json
@@ -0,0 +1 @@
+{"family": "fn3", "n_seqs": 5000, "length": 99, "gap_rates": [0.7918, 0.3656, 0.2542, 0.2098, 0.1746, 0.1402, 0.1348, 0.106, 0.0882, 0.0754, 0.096, 0.9346, 0.0408, 0.0308, 0.0262, 0.0174, 0.0124, 0.0106, 0.0088, 0.0086, 0.0074, 0.0072, 0.0066, 0.0066, 0.2228, 0.8602, 0.5348, 0.2438, 0.2204, 0.05, 0.0136, 0.0036, 0.0034, 0.0048, 0.002, 0.0032, 0.0028, 0.0012, 0.0304, 0.0114, 0.0104, 0.0136, 0.0106, 0.0448, 0.0312, 0.0326, 0.1048, 0.7798, 0.872, 0.9162, 0.9442, 0.931, 0.8976, 0.8422, 0.705, 0.5336, 0.09, 0.049, 0.03, 0.0234, 0.0158, 0.9302, 0.0104, 0.0096, 0.0088, 0.0094, 0.9306, 0.0222, 0.241, 0.8302, 0.0704, 0.0098, 0.0072, 0.0064, 0.0076, 0.0076, 0.0066, 0.0058, 0.0058, 0.0062, 0.0086, 0.0068, 0.0074, 0.0078, 0.0078, 0.0086, 0.0124, 0.0164, 0.0284, 0.036, 0.0542, 0.0734, 0.091, 0.1908, 0.2534, 0.2972, 0.3886, 0.5082, 0.6228], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/oligo_HPY.gap.json b/pfam_gap_rates/oligo_HPY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc2e1d2e2e2aa6ecb79cacda89e2874230016550
--- /dev/null
+++ b/pfam_gap_rates/oligo_HPY.gap.json
@@ -0,0 +1 @@
+{"family": "oligo_HPY", "n_seqs": 5000, "length": 68, "gap_rates": [0.0816, 0.0138, 0.0104, 0.0076, 0.0078, 0.0074, 0.0068, 0.006, 0.0062, 0.0056, 0.0028, 0.0022, 0.0018, 0.0014, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.0016, 0.0032, 0.0118, 0.0248, 0.044, 0.061, 0.0932, 0.1154, 0.1358, 0.1598, 0.1778, 0.8422, 0.8898, 0.624, 0.3468, 0.3056, 0.2952, 0.2984, 0.3028, 0.308, 0.3142, 0.3214, 0.3296, 0.3386, 0.3456, 0.3474, 0.3534, 0.3578, 0.3634, 0.3658, 0.3658, 0.3668, 0.3672, 0.3676, 0.3676, 0.3684, 0.369, 0.369, 0.3816, 0.3838, 0.386, 0.3944, 0.41, 0.4284, 0.4482, 0.456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/p25-alpha.gap.json b/pfam_gap_rates/p25-alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0562fa8a47f3bf78ec9c8592818ceedfb05a8f37
--- /dev/null
+++ b/pfam_gap_rates/p25-alpha.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/rRNA_processing.gap.json b/pfam_gap_rates/rRNA_processing.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e3a18aa19a81d52f20180af86ac477d0f19c755
--- /dev/null
+++ b/pfam_gap_rates/rRNA_processing.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_1f.gap.json b/pfam_gap_rates/tRNA-synt_1f.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da75414eacc61ef494d37a1271e4215d7784b032
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_1f.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_anti_2.gap.json b/pfam_gap_rates/tRNA_anti_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b9b3c0d196910e465dbf31581a50dd377cf7e0c
--- /dev/null
+++ b/pfam_gap_rates/tRNA_anti_2.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_anti_2", "n_seqs": 1703, "length": 114, "gap_rates": [0.3047563123899002, 0.12155020551967116, 0.06283029947152084, 0.04873752201996477, 0.03992953611274222, 0.03229594832648268, 0.026423957721667644, 0.024075161479741633, 0.022900763358778626, 0.02172636523781562, 0.02172636523781562, 0.01996476805637111, 0.019377568995889608, 0.017615971814445096, 0.7527891955372872, 0.6858485026423957, 0.06283029947152084, 0.10510863182618908, 0.022900763358778626, 0.017028772753963594, 0.5672342924251321, 0.9283617146212566, 0.017028772753963594, 0.2178508514386377, 0.005284791544333529, 0.005284791544333529, 0.004697592483852026, 0.004110393423370522, 0.004110393423370522, 0.0035231943628890195, 0.0035231943628890195, 0.0035231943628890195, 0.0035231943628890195, 0.0035231943628890195, 0.10217263652378156, 0.9224897240164416, 0.0364063417498532, 0.8978273634762184, 0.048150322959483266, 0.029947152084556665, 0.9359953024075162, 0.002348796241926013, 0.0011743981209630064, 0.014092777451556078, 0.0011743981209630064, 0.0017615971814445098, 0.0017615971814445098, 0.002348796241926013, 0.0017615971814445098, 0.0017615971814445098, 0.0017615971814445098, 0.8502642395772166, 0.8443922489724016, 0.002348796241926013, 0.0017615971814445098, 0.91015854374633, 0.9166177334116266, 0.9412800939518496, 0.9224897240164416, 0.9142689371697005, 0.9095713446858485, 0.0017615971814445098, 0.0017615971814445098, 0.0017615971814445098, 0.0017615971814445098, 0.0017615971814445098, 0.0017615971814445098, 0.0011743981209630064, 0.0011743981209630064, 0.0017615971814445098, 0.007046388725778039, 0.011743981209630064, 0.01644157369348209, 0.030534351145038167, 0.015854374633000587, 0.020551967116852612, 0.01644157369348209, 0.9236641221374046, 0.916030534351145, 0.007046388725778039, 0.0035231943628890195, 0.9424544920728127, 0.9471520845566647, 0.9377568995889607, 0.002935995302407516, 0.002935995302407516, 0.002935995302407516, 0.002935995302407516, 0.002935995302407516, 0.002935995302407516, 0.0035231943628890195, 0.0035231943628890195, 0.0035231943628890195, 0.0035231943628890195, 0.0035231943628890195, 0.0035231943628890195, 0.0035231943628890195, 0.0035231943628890195, 0.004110393423370522, 0.0064591896652965355, 0.004110393423370522, 0.005284791544333529, 0.004697592483852026, 0.0064591896652965355, 0.07633587786259542, 0.004697592483852026, 0.004697592483852026, 0.004697592483852026, 0.004697592483852026, 0.008807985907222548, 0.012918379330593071, 0.04169113329418673, 0.09630064591896653, 0.5942454492072813], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_m1G_MT.gap.json b/pfam_gap_rates/tRNA_m1G_MT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..891efe9f68871b2eafdeab77643d335f5c969702
--- /dev/null
+++ b/pfam_gap_rates/tRNA_m1G_MT.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_m1G_MT", "n_seqs": 2714, "length": 216, "gap_rates": [0.9454679439941046, 0.24760501105379515, 0.159174649963154, 0.131171702284451, 0.1208548268238762, 0.11348563006632277, 0.10869565217391304, 0.10501105379513632, 0.1028002947678703, 0.10132645541635962, 0.09764185703758291, 0.09579955784819455, 0.09469417833456154, 0.09432571849668386, 0.09358879882092852, 0.09322033898305085, 0.09285187914517318, 0.09211495946941783, 0.09174649963154016, 0.09137803979366249, 0.09137803979366249, 0.09064112011790715, 0.09027266028002948, 0.09027266028002948, 0.08953574060427413, 0.1028002947678703, 0.09285187914517318, 0.09027266028002948, 0.08953574060427413, 0.08953574060427413, 0.08953574060427413, 0.0899042004421518, 0.08916728076639646, 0.08879882092851879, 0.08769344141488578, 0.08806190125276345, 0.08953574060427413, 0.08806190125276345, 0.08585114222549742, 0.08585114222549742, 0.0873249815770081, 0.08916728076639646, 0.0899042004421518, 0.09064112011790715, 0.09616801768607222, 0.09653647752394989, 0.09285187914517318, 0.09211495946941783, 0.09100957995578482, 0.08843036109064112, 0.08879882092851879, 0.10353721444362564, 0.15806927044952102, 0.47531319086219603, 0.7741341193809874, 0.8599852616064849, 0.9281503316138541, 0.9399410464259396, 0.8901989683124539, 0.8242446573323507, 0.6949152542372882, 0.39793662490788506, 0.1823876197494473, 0.1993367722918202, 0.9266764922623434, 0.7918201915991157, 0.14812085482682388, 0.08843036109064112, 0.08437730287398673, 0.08511422254974207, 0.08437730287398673, 0.08253500368459837, 0.08364038319823139, 0.08437730287398673, 0.08585114222549742, 0.08769344141488578, 0.08953574060427413, 0.18017686072218128, 0.17501842299189388, 0.1643330876934414, 0.15327929255711129, 0.14443625644804717, 0.09322033898305085, 0.08658806190125276, 0.07258658806190126, 0.0655858511422255, 0.07221812822402358, 0.08916728076639646, 0.08437730287398673, 0.07663964627855564, 0.04900515843773029, 0.04274134119380987, 0.03758290346352248, 0.9388356669123066, 0.034635224760501106, 0.034266764922623434, 0.03279292557111275, 0.03279292557111275, 0.03316138540899042, 0.03316138540899042, 0.03316138540899042, 0.03316138540899042, 0.03279292557111275, 0.03279292557111275, 0.03316138540899042, 0.03279292557111275, 0.03316138540899042, 0.03279292557111275, 0.03389830508474576, 0.03389830508474576, 0.03352984524686809, 0.03316138540899042, 0.03352984524686809, 0.03316138540899042, 0.20154753131908623, 0.19970523212969787, 0.9067796610169492, 0.9078850405305822, 0.9082535003684599, 0.9075165806927045, 0.3614591009579956, 0.032424465733235076, 0.032056005895357405, 0.032424465733235076, 0.032424465733235076, 0.03168754605747973, 0.032056005895357405, 0.032056005895357405, 0.032424465733235076, 0.03279292557111275, 0.03168754605747973, 0.03131908621960206, 0.03168754605747973, 0.032056005895357405, 0.03279292557111275, 0.03352984524686809, 0.034635224760501106, 0.19896831245394253, 0.1982313927781872, 0.19712601326455417, 0.19491525423728814, 0.036477523949889464, 0.03537214443625645, 0.036845983787767135, 0.03537214443625645, 0.03574060427413412, 0.036845983787767135, 0.036477523949889464, 0.036477523949889464, 0.036477523949889464, 0.036477523949889464, 0.036845983787767135, 0.2866617538688283, 0.2092851879145173, 0.03721444362564481, 0.03758290346352248, 0.03758290346352248, 0.039056742815033164, 0.039056742815033164, 0.039425202652910836, 0.04016212232866617, 0.04016212232866617, 0.04200442151805453, 0.22144436256448047, 0.9196757553426677, 0.9322033898305084, 0.8677229182019159, 0.21923360353721444, 0.2133382461311717, 0.06190125276344879, 0.047899778924097275, 0.0449521002210759, 0.04605747973470892, 0.04642593957258659, 0.15217391304347827, 0.18717759764185704, 0.04937361827560796, 0.04605747973470892, 0.045320560058953574, 0.045320560058953574, 0.045689019896831246, 0.04605747973470892, 0.04605747973470892, 0.21665438467207074, 0.21296978629329402, 0.048268238761974946, 0.04679439941046426, 0.04679439941046426, 0.04679439941046426, 0.04679439941046426, 0.04716285924834193, 0.04863669859985262, 0.0475313190862196, 0.04863669859985262, 0.04900515843773029, 0.04937361827560796, 0.20781134856300662, 0.19196757553426677, 0.051584377302873984, 0.05121591746499631, 0.051952837140751655, 0.051952837140751655, 0.21554900515843772, 0.2170228445099484, 0.07737656595431099, 0.07774502579218866, 0.09432571849668386, 0.11090641120117907, 0.11717022844509949, 0.12564480471628592, 0.13301400147383935, 0.1363301400147384, 0.14185703758290347, 0.14959469417833457, 0.15659543109801033, 0.20781134856300662], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C2H2_3.gap.json b/pfam_gap_rates/zf-C2H2_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ddeb362e1416b49fb8e25be5c0dd0bab3f4555a9
--- /dev/null
+++ b/pfam_gap_rates/zf-C2H2_3.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C2H2_3", "n_seqs": 280, "length": 41, "gap_rates": [0.1, 0.08571428571428572, 0.08571428571428572, 0.07857142857142857, 0.04285714285714286, 0.039285714285714285, 0.03571428571428571, 0.04642857142857143, 0.03571428571428571, 0.02857142857142857, 0.14285714285714285, 0.09642857142857143, 0.05357142857142857, 0.9035714285714286, 0.18571428571428572, 0.15714285714285714, 0.0035714285714285713, 0.0035714285714285713, 0.0, 0.0, 0.0, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.007142857142857143, 0.010714285714285714, 0.007142857142857143, 0.007142857142857143, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.010714285714285714, 0.010714285714285714, 0.05, 0.675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C2H2_6.gap.json b/pfam_gap_rates/zf-C2H2_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f5b9b814c211cd54d127cda967150dd2706814e
--- /dev/null
+++ b/pfam_gap_rates/zf-C2H2_6.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C2H2_6", "n_seqs": 5000, "length": 26, "gap_rates": [0.87, 0.0878, 0.0472, 0.0094, 0.006, 0.005, 0.002, 0.0016, 0.0012, 0.0012, 0.0008, 0.0038, 0.0174, 0.0302, 0.0332, 0.0358, 0.0374, 0.0392, 0.04, 0.0404, 0.076, 0.111, 0.1376, 0.1502, 0.5274, 0.7346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C2H2_jaz.gap.json b/pfam_gap_rates/zf-C2H2_jaz.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12cc81bf7ade5764cbeac7be405327bcbc06e492
--- /dev/null
+++ b/pfam_gap_rates/zf-C2H2_jaz.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C2H2_jaz", "n_seqs": 1979, "length": 29, "gap_rates": [0.830722587165235, 0.22132390096008084, 0.07326932794340577, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00606366851945427, 0.021222839818089943, 0.9287518948964123, 0.9252147549267307, 0.03183425972713492, 0.19656392117230925, 0.20161697827185449, 0.4436584133400707], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CCHC_3.gap.json b/pfam_gap_rates/zf-CCHC_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc89896ce6143c78484aa8115b697bc72f93ad2b
--- /dev/null
+++ b/pfam_gap_rates/zf-CCHC_3.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CCHC_3", "n_seqs": 369, "length": 45, "gap_rates": [0.6747967479674797, 0.39295392953929537, 0.18157181571815717, 0.11653116531165311, 0.05962059620596206, 0.05420054200542006, 0.05420054200542006, 0.05420054200542006, 0.05420054200542006, 0.051490514905149054, 0.04336043360433604, 0.04336043360433604, 0.037940379403794036, 0.024390243902439025, 0.02710027100271003, 0.018970189701897018, 0.016260162601626018, 0.018970189701897018, 0.018970189701897018, 0.02168021680216802, 0.5203252032520326, 0.7533875338753387, 0.8563685636856369, 0.9186991869918699, 0.7994579945799458, 0.6504065040650406, 0.5989159891598916, 0.3252032520325203, 0.3685636856368564, 0.3712737127371274, 0.4092140921409214, 0.4254742547425474, 0.4363143631436314, 0.44715447154471544, 0.45528455284552843, 0.45528455284552843, 0.45528455284552843, 0.45799457994579945, 0.4634146341463415, 0.46883468834688347, 0.4715447154471545, 0.47696476964769646, 0.4959349593495935, 0.5474254742547425, 0.6910569105691057], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CCHH.gap.json b/pfam_gap_rates/zf-CCHH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f16ad79825ab0418a822b18aa1e0eed4a195d59
--- /dev/null
+++ b/pfam_gap_rates/zf-CCHH.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CCHH", "n_seqs": 217, "length": 25, "gap_rates": [0.4700460829493088, 0.07834101382488479, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004608294930875576, 0.009216589861751152, 0.013824884792626729, 0.1382488479262673, 0.2304147465437788, 0.6682027649769585], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CpG_bind_C.gap.json b/pfam_gap_rates/zf-CpG_bind_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd1097be6520eaedfba6b08efcc40d1ce9c0353e
--- /dev/null
+++ b/pfam_gap_rates/zf-CpG_bind_C.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CpG_bind_C", "n_seqs": 122, "length": 257, "gap_rates": [0.4426229508196721, 0.4262295081967213, 0.4016393442622951, 0.38524590163934425, 0.38524590163934425, 0.38524590163934425, 0.36885245901639346, 0.36885245901639346, 0.36885245901639346, 0.36885245901639346, 0.36885245901639346, 0.36885245901639346, 0.36885245901639346, 0.36885245901639346, 0.36065573770491804, 0.36065573770491804, 0.36065573770491804, 0.36065573770491804, 0.36065573770491804, 0.36065573770491804, 0.3524590163934426, 0.3524590163934426, 0.3524590163934426, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3524590163934426, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.32786885245901637, 0.32786885245901637, 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\ No newline at end of file
diff --git a/pfam_gap_rates/zf-Dof.gap.json b/pfam_gap_rates/zf-Dof.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15e0b4ed4407e70b115e08e050f638540a6394ab
--- /dev/null
+++ b/pfam_gap_rates/zf-Dof.gap.json
@@ -0,0 +1 @@
+{"family": "zf-Dof", "n_seqs": 846, "length": 58, "gap_rates": [0.9042553191489362, 0.45271867612293143, 0.20921985815602837, 0.04491725768321513, 0.018912529550827423, 0.01773049645390071, 0.01773049645390071, 0.01773049645390071, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.01773049645390071, 0.016548463356973995, 0.013002364066193853, 0.014184397163120567, 0.014184397163120567, 0.013002364066193853, 0.01182033096926714, 0.014184397163120567, 0.014184397163120567, 0.013002364066193853, 0.01182033096926714, 0.015366430260047281, 0.015366430260047281, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.009456264775413711, 0.009456264775413711, 0.013002364066193853, 0.015366430260047281, 0.01773049645390071, 0.02127659574468085, 0.02364066193853428, 0.02364066193853428, 0.02955082742316785, 0.02955082742316785, 0.030732860520094562, 0.034278959810874705, 0.034278959810874705, 0.03546099290780142, 0.04373522458628842, 0.04491725768321513, 0.04846335697399527, 0.04846335697399527, 0.0508274231678487, 0.054373522458628844, 0.057919621749408984, 0.06264775413711583, 0.0673758865248227, 0.08392434988179669, 0.13238770685579196, 0.21749408983451538], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-FPG_IleRS.gap.json b/pfam_gap_rates/zf-FPG_IleRS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0f14156bf390e0390c972bf129fac321f0d0909
--- /dev/null
+++ b/pfam_gap_rates/zf-FPG_IleRS.gap.json
@@ -0,0 +1 @@
+{"family": "zf-FPG_IleRS", "n_seqs": 2588, "length": 31, "gap_rates": [0.35316846986089645, 0.19860896445131376, 0.0571870170015456, 0.012751159196290572, 0.014683153013910355, 0.011205564142194745, 0.9455177743431221, 0.0038639876352395673, 0.00231839258114374, 0.002704791344667697, 0.0015455950540958269, 0.005023183925811438, 0.0003863987635239567, 0.00115919629057187, 0.0015455950540958269, 0.0003863987635239567, 0.0003863987635239567, 0.02125193199381762, 0.011978361669242658, 0.0077279752704791345, 0.0019319938176197836, 0.00115919629057187, 0.0007727975270479134, 0.0007727975270479134, 0.00115919629057187, 0.0019319938176197836, 0.00927357032457496, 0.010046367851622875, 0.03438948995363215, 0.4242658423493045, 0.8825347758887172], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RING_2.gap.json b/pfam_gap_rates/zf-RING_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d998d58939638aaac0dfcb9a9718090accc18642
--- /dev/null
+++ b/pfam_gap_rates/zf-RING_2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RING_2", "n_seqs": 5000, "length": 55, "gap_rates": [0.8944, 0.1506, 0.0286, 0.0278, 0.0258, 0.0258, 0.027, 0.0378, 0.0326, 0.0308, 0.9344, 0.03, 0.0548, 0.0712, 0.0338, 0.0162, 0.94, 0.8996, 0.014, 0.0148, 0.9358, 0.045, 0.0408, 0.8252, 0.0814, 0.8916, 0.001, 0.0002, 0.0, 0.0006, 0.0002, 0.0004, 0.0004, 0.0002, 0.0, 0.0004, 0.0, 0.0004, 0.0112, 0.0056, 0.0114, 0.0102, 0.011, 0.0296, 0.0262, 0.8392, 0.9144, 0.9386, 0.8966, 0.7362, 0.0098, 0.0112, 0.022, 0.035, 0.1218], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RING_9.gap.json b/pfam_gap_rates/zf-RING_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53bfad537ff06a7d70d9f87b0058c24ff1ac6077
--- /dev/null
+++ b/pfam_gap_rates/zf-RING_9.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RING_9", "n_seqs": 382, "length": 217, "gap_rates": [0.2931937172774869, 0.16230366492146597, 0.1387434554973822, 0.13612565445026178, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.11780104712041885, 0.11780104712041885, 0.12303664921465969, 0.11780104712041885, 0.11780104712041885, 0.12041884816753927, 0.11518324607329843, 0.11518324607329843, 0.112565445026178, 0.112565445026178, 0.112565445026178, 0.112565445026178, 0.112565445026178, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.112565445026178, 0.112565445026178, 0.112565445026178, 0.1099476439790576, 0.112565445026178, 0.1099476439790576, 0.1099476439790576, 0.10209424083769633, 0.10732984293193717, 0.1099476439790576, 0.112565445026178, 0.1099476439790576, 0.1099476439790576, 0.1099476439790576, 0.1099476439790576, 0.1099476439790576, 0.10732984293193717, 0.10471204188481675, 0.11518324607329843, 0.12041884816753927, 0.112565445026178, 0.10471204188481675, 0.10471204188481675, 0.10209424083769633, 0.11518324607329843, 0.10732984293193717, 0.112565445026178, 0.12041884816753927, 0.12303664921465969, 0.13612565445026178, 0.12041884816753927, 0.12041884816753927, 0.11518324607329843, 0.112565445026178, 0.112565445026178, 0.11780104712041885, 0.11518324607329843, 0.13089005235602094, 0.16230366492146597, 0.13350785340314136, 0.12827225130890052, 0.12041884816753927, 0.12041884816753927, 0.11518324607329843, 0.12041884816753927, 0.12041884816753927, 0.11780104712041885, 0.11518324607329843, 0.11780104712041885, 0.12041884816753927, 0.11518324607329843, 0.11518324607329843, 0.11518324607329843, 0.112565445026178, 0.12303664921465969, 0.1256544502617801, 0.11518324607329843, 0.112565445026178, 0.112565445026178, 0.20418848167539266, 0.112565445026178, 0.112565445026178, 0.112565445026178, 0.1099476439790576, 0.5026178010471204, 0.4869109947643979, 0.9397905759162304, 0.13089005235602094, 0.12041884816753927, 0.11780104712041885, 0.11780104712041885, 0.12303664921465969, 0.5, 0.47643979057591623, 0.193717277486911, 0.2356020942408377, 0.4109947643979058, 0.9450261780104712, 0.19895287958115182, 0.13612565445026178, 0.112565445026178, 0.112565445026178, 0.112565445026178, 0.112565445026178, 0.1099476439790576, 0.11518324607329843, 0.112565445026178, 0.112565445026178, 0.1099476439790576, 0.1099476439790576, 0.10732984293193717, 0.10209424083769633, 0.09947643979057591, 0.09947643979057591, 0.0968586387434555, 0.0968586387434555, 0.09424083769633508, 0.09947643979057591, 0.10209424083769633, 0.10471204188481675, 0.10209424083769633, 0.0968586387434555, 0.10209424083769633, 0.10209424083769633, 0.1099476439790576, 0.9240837696335078, 0.9240837696335078, 0.9240837696335078, 0.11518324607329843, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12303664921465969, 0.1256544502617801, 0.1256544502617801, 0.1256544502617801, 0.1256544502617801, 0.1256544502617801, 0.12827225130890052, 0.7198952879581152, 0.12827225130890052, 0.12827225130890052, 0.1387434554973822, 0.1544502617801047, 0.1544502617801047, 0.16230366492146597, 0.1649214659685864, 0.17277486910994763, 0.17277486910994763, 0.17539267015706805, 0.17539267015706805, 0.9162303664921466, 0.918848167539267, 0.9162303664921466, 0.17539267015706805, 0.17539267015706805, 0.17539267015706805, 0.17801047120418848, 0.1806282722513089, 0.7801047120418848, 0.18586387434554974, 0.20418848167539266, 0.19109947643979058, 0.19109947643979058, 0.19109947643979058, 0.19109947643979058, 0.193717277486911, 0.193717277486911, 0.19633507853403143, 0.19633507853403143, 0.19895287958115182, 0.20157068062827224, 0.2198952879581152, 0.4397905759162304, 0.225130890052356, 0.2356020942408377, 0.23298429319371727, 0.23298429319371727, 0.23298429319371727, 0.23298429319371727, 0.2356020942408377, 0.2356020942408377, 0.2356020942408377, 0.24083769633507854, 0.2486910994764398, 0.2486910994764398, 0.2486910994764398, 0.3298429319371728, 0.35340314136125656, 0.39528795811518325, 0.43717277486910994, 0.7198952879581152, 0.5549738219895288, 0.9476439790575916, 0.9424083769633508, 0.35602094240837695, 0.29842931937172773, 0.3036649214659686, 0.3089005235602094, 0.32722513089005234, 0.34293193717277487, 0.3717277486910995, 0.4293193717277487, 0.5837696335078534], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-Sec23_Sec24.gap.json b/pfam_gap_rates/zf-Sec23_Sec24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f78398d081aa80dc79ee04942e005365a20d3b1
--- /dev/null
+++ b/pfam_gap_rates/zf-Sec23_Sec24.gap.json
@@ -0,0 +1 @@
+{"family": "zf-Sec23_Sec24", "n_seqs": 1262, "length": 41, "gap_rates": [0.10855784469096671, 0.029318541996830427, 0.011885895404120444, 0.00792393026941363, 0.0071315372424722665, 0.01664025356576862, 0.9057052297939778, 0.8114104595879557, 0.0071315372424722665, 0.0071315372424722665, 0.006339144215530904, 0.004754358161648178, 0.004754358161648178, 0.003961965134706815, 0.003961965134706815, 0.002377179080824089, 0.000792393026941363, 0.000792393026941363, 0.0, 0.025356576862123614, 0.01664025356576862, 0.01347068145800317, 0.10221870047543581, 0.011093502377179081, 0.003961965134706815, 0.001584786053882726, 0.001584786053882726, 0.002377179080824089, 0.003169572107765452, 0.003961965134706815, 0.004754358161648178, 0.004754358161648178, 0.004754358161648178, 0.006339144215530904, 0.009508716323296355, 0.019809825673534072, 0.03565768621236133, 0.0832012678288431, 0.11251980982567353, 0.1838351822503962, 0.347068145800317], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-TFIIIC.gap.json b/pfam_gap_rates/zf-TFIIIC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21fdb2c9ff2ec80c1d3f9fe5711bcb2ab5ad980c
--- /dev/null
+++ b/pfam_gap_rates/zf-TFIIIC.gap.json
@@ -0,0 +1 @@
+{"family": "zf-TFIIIC", "n_seqs": 136, "length": 129, "gap_rates": [0.9264705882352942, 0.9117647058823529, 0.8897058823529411, 0.8014705882352942, 0.6911764705882353, 0.6176470588235294, 0.5514705882352942, 0.4485294117647059, 0.9485294117647058, 0.9117647058823529, 0.19852941176470587, 0.17647058823529413, 0.13970588235294118, 0.1323529411764706, 0.1323529411764706, 0.1323529411764706, 0.1323529411764706, 0.13970588235294118, 0.1323529411764706, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.14705882352941177, 0.11764705882352941, 0.08088235294117647, 0.0661764705882353, 0.08088235294117647, 0.051470588235294115, 0.014705882352941176, 0.007352941176470588, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.022058823529411766, 0.014705882352941176, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.03676470588235294, 0.029411764705882353, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.0661764705882353, 0.051470588235294115, 0.5955882352941176, 0.0661764705882353, 0.051470588235294115, 0.058823529411764705, 0.08088235294117647, 0.16911764705882354, 0.17647058823529413, 0.19117647058823528, 0.19117647058823528, 0.17647058823529413, 0.19852941176470587, 0.2867647058823529, 0.33088235294117646, 0.3602941176470588, 0.36764705882352944, 0.4411764705882353, 0.4338235294117647, 0.45588235294117646, 0.47058823529411764, 0.5661764705882353, 0.8455882352941176, 0.6764705882352942, 0.6617647058823529, 0.6029411764705882, 0.8529411764705882, 0.875, 0.8970588235294118, 0.9117647058823529, 0.9411764705882353, 0.9485294117647058, 0.9411764705882353, 0.9191176470588235, 0.9117647058823529, 0.8970588235294118, 0.8529411764705882, 0.8382352941176471, 0.5073529411764706, 0.5073529411764706, 0.47058823529411764, 0.4485294117647059, 0.4485294117647059, 0.4411764705882353, 0.4411764705882353, 0.375, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.375, 0.38235294117647056, 0.40441176470588236, 0.3897058823529412, 0.3897058823529412, 0.38235294117647056, 0.4117647058823529, 0.3897058823529412, 0.38235294117647056, 0.3897058823529412, 0.3897058823529412, 0.39705882352941174, 0.3897058823529412, 0.39705882352941174, 0.4411764705882353, 0.47794117647058826, 0.6102941176470589], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zinc_ribbon_4.gap.json b/pfam_gap_rates/zinc_ribbon_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f771719b605a60295717c63d47c685a5efcada08
--- /dev/null
+++ b/pfam_gap_rates/zinc_ribbon_4.gap.json
@@ -0,0 +1 @@
+{"family": "zinc_ribbon_4", "n_seqs": 296, "length": 37, "gap_rates": [0.06756756756756757, 0.0472972972972973, 0.010135135135135136, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.010135135135135136, 0.006756756756756757, 0.0, 0.0033783783783783786, 0.9425675675675675, 0.0033783783783783786, 0.0, 0.030405405405405407, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.010135135135135136, 0.05405405405405406, 0.0945945945945946, 0.4797297297297297], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file