diff --git a/pfam_gap_rates/17kDa_Anti_2.gap.json b/pfam_gap_rates/17kDa_Anti_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e2e09dc9425179ac38ec1b933c78a3944d0f210
--- /dev/null
+++ b/pfam_gap_rates/17kDa_Anti_2.gap.json
@@ -0,0 +1 @@
+{"family": "17kDa_Anti_2", "n_seqs": 154, "length": 118, "gap_rates": [0.935064935064935, 0.922077922077922, 0.922077922077922, 0.9155844155844156, 0.9155844155844156, 0.8961038961038961, 0.8766233766233766, 0.8701298701298701, 0.8506493506493507, 0.8116883116883117, 0.8051948051948052, 0.7922077922077922, 0.7727272727272727, 0.7337662337662337, 0.7207792207792207, 0.7077922077922078, 0.6948051948051948, 0.6948051948051948, 0.6948051948051948, 0.6948051948051948, 0.8896103896103896, 0.8636363636363636, 0.7662337662337663, 0.6948051948051948, 0.6753246753246753, 0.6558441558441559, 0.6558441558441559, 0.6103896103896104, 0.5844155844155844, 0.525974025974026, 0.44805194805194803, 0.36363636363636365, 0.33116883116883117, 0.2857142857142857, 0.2857142857142857, 0.2662337662337662, 0.2662337662337662, 0.2662337662337662, 0.2662337662337662, 0.2532467532467532, 0.2532467532467532, 0.24025974025974026, 0.22727272727272727, 0.2012987012987013, 0.2077922077922078, 0.2012987012987013, 0.18181818181818182, 0.16233766233766234, 0.13636363636363635, 0.13636363636363635, 0.11038961038961038, 0.15584415584415584, 0.01948051948051948, 0.006493506493506494, 0.006493506493506494, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006493506493506494, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.012987012987012988, 0.006493506493506494, 0.9415584415584416, 0.5324675324675324, 0.0, 0.006493506493506494, 0.012987012987012988, 0.006493506493506494, 0.0, 0.0, 0.0, 0.0, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.012987012987012988, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.012987012987012988, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.045454545454545456, 0.03896103896103896, 0.07792207792207792, 0.17532467532467533, 0.2857142857142857, 0.6168831168831169, 0.7337662337662337, 0.7532467532467533, 0.8181818181818182], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/2OG-FeII_Oxy_5.gap.json b/pfam_gap_rates/2OG-FeII_Oxy_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62d8a957a6f4fc115460e879a39f892e44d03050
--- /dev/null
+++ b/pfam_gap_rates/2OG-FeII_Oxy_5.gap.json
@@ -0,0 +1 @@
+{"family": "2OG-FeII_Oxy_5", "n_seqs": 220, "length": 117, "gap_rates": [0.759090909090909, 0.09545454545454546, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.00909090909090909, 0.00909090909090909, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.00909090909090909, 0.01818181818181818, 0.004545454545454545, 0.00909090909090909, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.8045454545454546, 0.8181818181818182, 0.8772727272727273, 0.9409090909090909, 0.95, 0.9454545454545454, 0.9181818181818182, 0.85, 0.8136363636363636, 0.7818181818181819, 0.004545454545454545, 0.013636363636363636, 0.2727272727272727, 0.24545454545454545, 0.18636363636363637, 0.11818181818181818, 0.07272727272727272, 0.022727272727272728, 0.013636363636363636, 0.9318181818181818, 0.9454545454545454, 0.9227272727272727, 0.004545454545454545, 0.013636363636363636, 0.013636363636363636, 0.01818181818181818, 0.022727272727272728, 0.05454545454545454, 0.95, 0.05909090909090909, 0.045454545454545456, 0.05909090909090909, 0.13636363636363635, 0.14545454545454545, 0.20454545454545456, 0.21818181818181817, 0.25, 0.20454545454545456, 0.9409090909090909, 0.1409090909090909, 0.06818181818181818, 0.031818181818181815, 0.022727272727272728, 0.022727272727272728, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.031818181818181815, 0.031818181818181815, 0.045454545454545456, 0.045454545454545456, 0.05909090909090909, 0.9409090909090909, 0.09545454545454546, 0.05454545454545454, 0.05454545454545454, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.07727272727272727, 0.08181818181818182, 0.08181818181818182], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/3-HAO.gap.json b/pfam_gap_rates/3-HAO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2924c7d34d6f8fa75c388a65b5103b7e63ebdf2c
--- /dev/null
+++ b/pfam_gap_rates/3-HAO.gap.json
@@ -0,0 +1 @@
+{"family": "3-HAO", "n_seqs": 324, "length": 167, "gap_rates": [0.9320987654320988, 0.9074074074074074, 0.8364197530864198, 0.6018518518518519, 0.3117283950617284, 0.2037037037037037, 0.17592592592592593, 0.16049382716049382, 0.16049382716049382, 0.15432098765432098, 0.15123456790123457, 0.15123456790123457, 0.14506172839506173, 0.1419753086419753, 0.1419753086419753, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.13580246913580246, 0.13580246913580246, 0.13580246913580246, 0.13580246913580246, 0.13271604938271606, 0.13271604938271606, 0.12345679012345678, 0.12037037037037036, 0.12037037037037036, 0.11728395061728394, 0.11419753086419752, 0.9444444444444444, 0.9135802469135802, 0.11419753086419752, 0.9382716049382716, 0.8950617283950617, 0.11419753086419752, 0.9382716049382716, 0.7561728395061729, 0.1111111111111111, 0.9166666666666666, 0.10802469135802469, 0.10802469135802469, 0.10802469135802469, 0.08950617283950617, 0.08950617283950617, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08024691358024691, 0.08024691358024691, 0.07716049382716049, 0.07407407407407407, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06172839506172839, 0.06172839506172839, 0.06172839506172839, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05246913580246913, 0.05246913580246913, 0.046296296296296294, 0.046296296296296294, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.040123456790123455, 0.037037037037037035, 0.8950617283950617, 0.9166666666666666, 0.9135802469135802, 0.8919753086419753, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.040123456790123455, 0.043209876543209874, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.04938271604938271, 0.04938271604938271, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05864197530864197, 0.06172839506172839, 0.06172839506172839, 0.06172839506172839, 0.05555555555555555, 0.9290123456790124, 0.05555555555555555, 0.05555555555555555, 0.05246913580246913, 0.05246913580246913, 0.05246913580246913, 0.05246913580246913, 0.05246913580246913, 0.05246913580246913, 0.05246913580246913, 0.05246913580246913, 0.05555555555555555, 0.05864197530864197, 0.07716049382716049, 0.07716049382716049, 0.07716049382716049, 0.07407407407407407, 0.08024691358024691, 0.08024691358024691, 0.08024691358024691, 0.08024691358024691, 0.07407407407407407, 0.07407407407407407, 0.07716049382716049, 0.07716049382716049, 0.08024691358024691, 0.08024691358024691, 0.08024691358024691, 0.08024691358024691, 0.08333333333333333, 0.08333333333333333, 0.9197530864197531, 0.9228395061728395, 0.9228395061728395, 0.9166666666666666, 0.08333333333333333, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.09259259259259259, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.08950617283950617, 0.09567901234567901, 0.14506172839506173, 0.6080246913580247], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/6PGD.gap.json b/pfam_gap_rates/6PGD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85bfe17e49b54198bb67b39f70cf6888a07b2010
--- /dev/null
+++ b/pfam_gap_rates/6PGD.gap.json
@@ -0,0 +1 @@
+{"family": "6PGD", "n_seqs": 1905, "length": 308, "gap_rates": [0.08241469816272966, 0.07979002624671916, 0.07979002624671916, 0.07979002624671916, 0.07769028871391076, 0.07139107611548556, 0.07139107611548556, 0.07139107611548556, 0.07139107611548556, 0.07034120734908136, 0.06981627296587926, 0.06981627296587926, 0.06876640419947506, 0.06876640419947506, 0.06876640419947506, 0.06614173228346457, 0.06561679790026247, 0.06561679790026247, 0.06561679790026247, 0.06509186351706037, 0.06561679790026247, 0.06614173228346457, 0.06666666666666667, 0.06719160104986877, 0.06719160104986877, 0.06771653543307087, 0.06876640419947506, 0.08346456692913386, 0.10708661417322834, 0.9359580052493438, 0.19265091863517061, 0.18005249343832022, 0.13700787401574804, 0.13228346456692913, 0.13123359580052493, 0.13858267716535433, 0.12178477690288714, 0.11916010498687664, 0.11496062992125984, 0.11601049868766404, 0.11758530183727034, 0.14225721784776904, 0.14120734908136484, 0.13805774278215224, 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\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Srv.gap.json b/pfam_gap_rates/7TM_GPCR_Srv.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..506cbd9aa64b93fcbc1f309dceff1e3cd2528624
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Srv.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7tm_4.gap.json b/pfam_gap_rates/7tm_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce0bb564656bcbcab1232c419cfdc59543491c40
--- /dev/null
+++ b/pfam_gap_rates/7tm_4.gap.json
@@ -0,0 +1 @@
+{"family": "7tm_4", "n_seqs": 5000, "length": 280, "gap_rates": [0.5102, 0.4066, 0.2026, 0.149, 0.1432, 0.1402, 0.1386, 0.1354, 0.132, 0.1306, 0.1294, 0.1292, 0.1292, 0.1282, 0.1282, 0.1274, 0.1272, 0.1258, 0.1254, 0.126, 0.1254, 0.1238, 0.1232, 0.1224, 0.1222, 0.1214, 0.1216, 0.1206, 0.0946, 0.095, 0.0948, 0.0946, 0.0944, 0.0944, 0.0928, 0.0916, 0.092, 0.0918, 0.0904, 0.0892, 0.0894, 0.0888, 0.0892, 0.089, 0.0882, 0.0878, 0.0872, 0.0854, 0.0854, 0.085, 0.0838, 0.0834, 0.0846, 0.0848, 0.08, 0.0834, 0.079, 0.078, 0.0776, 0.0754, 0.075, 0.0746, 0.0742, 0.074, 0.0744, 0.0744, 0.0736, 0.0726, 0.07, 0.0706, 0.0692, 0.0686, 0.0744, 0.0702, 0.0698, 0.0686, 0.067, 0.067, 0.0664, 0.065, 0.064, 0.0638, 0.0634, 0.0618, 0.0606, 0.0594, 0.0592, 0.049, 0.049, 0.0494, 0.0502, 0.051, 0.0518, 0.0512, 0.0516, 0.0514, 0.0518, 0.0518, 0.052, 0.0528, 0.0536, 0.0542, 0.0544, 0.0556, 0.0552, 0.0564, 0.0576, 0.0574, 0.0574, 0.0762, 0.0682, 0.0654, 0.0636, 0.0636, 0.063, 0.063, 0.0628, 0.0618, 0.0622, 0.0626, 0.0636, 0.062, 0.063, 0.0648, 0.0782, 0.0684, 0.0616, 0.0632, 0.0652, 0.065, 0.0632, 0.0668, 0.067, 0.0664, 0.058, 0.0544, 0.0536, 0.0542, 0.0532, 0.0554, 0.0652, 0.0638, 0.0684, 0.0534, 0.0534, 0.0528, 0.0536, 0.0528, 0.053, 0.0536, 0.0542, 0.0536, 0.0522, 0.0516, 0.0512, 0.0506, 0.05, 0.0512, 0.0508, 0.0512, 0.052, 0.0542, 0.0616, 0.072, 0.0834, 0.0832, 0.0876, 0.0886, 0.0862, 0.067, 0.1176, 0.0712, 0.0652, 0.06, 0.063, 0.0632, 0.0618, 0.0658, 0.0628, 0.064, 0.061, 0.0594, 0.0558, 0.053, 0.0526, 0.0524, 0.0524, 0.052, 0.0522, 0.0518, 0.0514, 0.0512, 0.0606, 0.0594, 0.0924, 0.06, 0.0576, 0.0634, 0.0644, 0.0522, 0.055, 0.0586, 0.0562, 0.0516, 0.0516, 0.0504, 0.0508, 0.051, 0.0514, 0.0514, 0.0516, 0.052, 0.0524, 0.0528, 0.0528, 0.0538, 0.0538, 0.0544, 0.0552, 0.0566, 0.0572, 0.058, 0.065, 0.0756, 0.0946, 0.1054, 0.1014, 0.115, 0.1106, 0.1228, 0.2156, 0.2134, 0.1746, 0.1856, 0.1602, 0.1432, 0.1654, 0.1792, 0.1428, 0.1818, 0.2446, 0.1928, 0.1064, 0.105, 0.1062, 0.095, 0.0862, 0.0858, 0.084, 0.083, 0.081, 0.073, 0.072, 0.072, 0.0724, 0.0724, 0.0728, 0.073, 0.0734, 0.0742, 0.0744, 0.0752, 0.0756, 0.0766, 0.0772, 0.0788, 0.0788, 0.0796, 0.081, 0.0846, 0.0866, 0.0894, 0.096, 0.11, 0.1304, 0.1718, 0.2772, 0.5416, 0.789, 0.8858], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/A2M.gap.json b/pfam_gap_rates/A2M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14a5c11aafbc3f0efebeda290a57228394150d86
--- /dev/null
+++ b/pfam_gap_rates/A2M.gap.json
@@ -0,0 +1 @@
+{"family": "A2M", "n_seqs": 1196, "length": 93, "gap_rates": [0.5091973244147158, 0.3737458193979933, 0.24163879598662208, 0.205685618729097, 0.20317725752508362, 0.19147157190635453, 0.1697324414715719, 0.1479933110367893, 0.14046822742474915, 0.14297658862876253, 0.44732441471571904, 0.1362876254180602, 0.06688963210702341, 0.038461538461538464, 0.03260869565217391, 0.027591973244147156, 0.025919732441471572, 0.025919732441471572, 0.02508361204013378, 0.0225752508361204, 0.0225752508361204, 0.021739130434782608, 0.020903010033444816, 0.020903010033444816, 0.020066889632107024, 0.020066889632107024, 0.020066889632107024, 0.016722408026755852, 0.01588628762541806, 0.01588628762541806, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.01588628762541806, 0.013377926421404682, 0.290133779264214, 0.014214046822742474, 0.015050167224080268, 0.01254180602006689, 0.010869565217391304, 0.010033444816053512, 0.00919732441471572, 0.010869565217391304, 0.5886287625418061, 0.8453177257525084, 0.011705685618729096, 0.008361204013377926, 0.008361204013377926, 0.00919732441471572, 0.008361204013377926, 0.008361204013377926, 0.008361204013377926, 0.008361204013377926, 0.008361204013377926, 0.008361204013377926, 0.00919732441471572, 0.010869565217391304, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.014214046822742474, 0.015050167224080268, 0.015050167224080268, 0.017558528428093644, 0.01839464882943144, 0.01839464882943144, 0.024247491638795988, 0.042642140468227424, 0.048494983277591976, 0.057692307692307696, 0.06020066889632107, 0.06688963210702341, 0.08695652173913043, 0.0903010033444816, 0.10451505016722408, 0.12040133779264214, 0.14214046822742474, 0.15468227424749165, 0.17642140468227424, 0.19648829431438128, 0.21989966555183946, 0.2591973244147157, 0.34615384615384615, 0.47324414715719065, 0.7550167224080268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/A2M_recep.gap.json b/pfam_gap_rates/A2M_recep.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e04ea695adde8d6572612f62821cadd61001e8e7
--- /dev/null
+++ b/pfam_gap_rates/A2M_recep.gap.json
@@ -0,0 +1 @@
+{"family": "A2M_recep", "n_seqs": 471, "length": 98, "gap_rates": [0.17834394904458598, 0.10191082802547771, 0.06157112526539278, 0.05732484076433121, 0.05732484076433121, 0.04670912951167728, 0.04670912951167728, 0.04670912951167728, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.04246284501061571, 0.05732484076433121, 0.14861995753715498, 0.1592356687898089, 0.27388535031847133, 0.9087048832271762, 0.28450106157112526, 0.22505307855626328, 0.36942675159235666, 0.21231422505307856, 0.06157112526539278, 0.09129511677282377, 0.040339702760084924, 0.04246284501061571, 0.044585987261146494, 0.03821656050955414, 0.03821656050955414, 0.6242038216560509, 0.8853503184713376, 0.9129511677282378, 0.9002123142250531, 0.6539278131634819, 0.04883227176220807, 0.05307855626326964, 0.04246284501061571, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.03821656050955414, 0.03397027600849257, 0.027600849256900213, 0.03184713375796178, 0.021231422505307854, 0.027600849256900213, 0.027600849256900213, 0.2929936305732484, 0.37367303609341823, 0.036093418259023353, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.029723991507430998, 0.029723991507430998, 0.029723991507430998, 0.03184713375796178, 0.05732484076433121, 0.03184713375796178, 0.03397027600849257, 0.9193205944798302, 0.03184713375796178, 0.03397027600849257, 0.03397027600849257, 0.036093418259023353, 0.040339702760084924, 0.03397027600849257, 0.036093418259023353, 0.040339702760084924, 0.04670912951167728, 0.04670912951167728, 0.04670912951167728, 0.04670912951167728, 0.059447983014861996, 0.07218683651804671, 0.1040339702760085, 0.13800424628450106, 0.16772823779193205, 0.1910828025477707, 0.2208067940552017, 0.29936305732484075, 0.32696390658174096], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_16.gap.json b/pfam_gap_rates/AAA_16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d92c87d834f53e10de63f8ee45859cb4bc94616
--- /dev/null
+++ b/pfam_gap_rates/AAA_16.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_31.gap.json b/pfam_gap_rates/AAA_31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d2a322438515751b6e405259e11347e9c3ff7ab
--- /dev/null
+++ b/pfam_gap_rates/AAA_31.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_31", "n_seqs": 5000, "length": 199, "gap_rates": [0.7624, 0.3568, 0.2226, 0.1802, 0.1582, 0.135, 0.132, 0.1304, 0.1234, 0.1202, 0.1134, 0.0898, 0.0774, 0.0234, 0.0226, 0.0222, 0.022, 0.0218, 0.021, 0.0206, 0.0202, 0.019, 0.019, 0.019, 0.02, 0.0186, 0.0184, 0.893, 0.0204, 0.0204, 0.0228, 0.0234, 0.0184, 0.0168, 0.015, 0.0152, 0.015, 0.0152, 0.0154, 0.016, 0.0166, 0.0172, 0.8964, 0.0202, 0.0192, 0.0296, 0.0216, 0.0214, 0.929, 0.0512, 0.0524, 0.0772, 0.1202, 0.2298, 0.153, 0.1352, 0.099, 0.9036, 0.9468, 0.9202, 0.8838, 0.1212, 0.095, 0.0522, 0.036, 0.0344, 0.0318, 0.0324, 0.0312, 0.0524, 0.8648, 0.9184, 0.8872, 0.8384, 0.0552, 0.826, 0.0524, 0.0402, 0.036, 0.0334, 0.0336, 0.0336, 0.0344, 0.0342, 0.0342, 0.0378, 0.1744, 0.096, 0.0714, 0.8264, 0.087, 0.0468, 0.0428, 0.0386, 0.0352, 0.034, 0.0332, 0.0368, 0.0366, 0.0388, 0.0676, 0.0838, 0.1038, 0.0956, 0.0812, 0.0812, 0.0758, 0.078, 0.0832, 0.0864, 0.1866, 0.1838, 0.215, 0.221, 0.2328, 0.1818, 0.8976, 0.9152, 0.9302, 0.9442, 0.924, 0.9116, 0.8718, 0.132, 0.1162, 0.0842, 0.9486, 0.0636, 0.0426, 0.0352, 0.0338, 0.0322, 0.0318, 0.0318, 0.0376, 0.045, 0.0466, 0.031, 0.9422, 0.0348, 0.0328, 0.028, 0.028, 0.0278, 0.0278, 0.0278, 0.028, 0.032, 0.0322, 0.059, 0.0498, 0.0464, 0.0486, 0.0566, 0.0622, 0.0662, 0.0682, 0.07, 0.0714, 0.0788, 0.0866, 0.0914, 0.094, 0.0968, 0.0984, 0.0998, 0.103, 0.106, 0.11, 0.117, 0.127, 0.155, 0.1552, 0.1638, 0.1612, 0.1654, 0.171, 0.1766, 0.1842, 0.1884, 0.1958, 0.2034, 0.2158, 0.23, 0.2524, 0.2758, 0.3044, 0.3426, 0.3792, 0.4146, 0.445, 0.494, 0.536, 0.547, 0.5594, 0.5714, 0.5828, 0.6208, 0.7344], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_assoc.gap.json b/pfam_gap_rates/AAA_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f94b8e63bae23a9cb22f7b785701766c8df74631
--- /dev/null
+++ b/pfam_gap_rates/AAA_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_assoc", "n_seqs": 467, "length": 107, "gap_rates": [0.3640256959314775, 0.2676659528907923, 0.23768736616702354, 0.21627408993576017, 0.19914346895074947, 0.19271948608137046, 0.16916488222698073, 0.13704496788008566, 0.12205567451820129, 0.3511777301927195, 0.11349036402569593, 0.10920770877944326, 0.09850107066381156, 0.09850107066381156, 0.09421841541755889, 0.7387580299785867, 0.08565310492505353, 0.08565310492505353, 0.08565310492505353, 0.9421841541755889, 0.9464668094218416, 0.8972162740899358, 0.5610278372591007, 0.13276231263383298, 0.4475374732334047, 0.05353319057815846, 0.04925053533190578, 0.047109207708779445, 0.047109207708779445, 0.047109207708779445, 0.042826552462526764, 0.042826552462526764, 0.04068522483940043, 0.04068522483940043, 0.04068522483940043, 0.04068522483940043, 0.042826552462526764, 0.03854389721627409, 0.6209850107066381, 0.9186295503211992, 0.5289079229122056, 0.034261241970021415, 0.034261241970021415, 0.027837259100642397, 0.017130620985010708, 0.017130620985010708, 0.014989293361884369, 0.014989293361884369, 0.014989293361884369, 0.014989293361884369, 0.014989293361884369, 0.01284796573875803, 0.01284796573875803, 0.01284796573875803, 0.01284796573875803, 0.01284796573875803, 0.01284796573875803, 0.01284796573875803, 0.014989293361884369, 0.01284796573875803, 0.014989293361884369, 0.9271948608137045, 0.8993576017130621, 0.017130620985010708, 0.5717344753747323, 0.014989293361884369, 0.01284796573875803, 0.17987152034261242, 0.014989293361884369, 0.01284796573875803, 0.01284796573875803, 0.014989293361884369, 0.014989293361884369, 0.11349036402569593, 0.11777301927194861, 0.03640256959314775, 0.6745182012847966, 0.044967880085653104, 0.9271948608137045, 0.03854389721627409, 0.05139186295503212, 0.017130620985010708, 0.017130620985010708, 0.017130620985010708, 0.019271948608137045, 0.019271948608137045, 0.023554603854389723, 0.021413276231263382, 0.032119914346895075, 0.021413276231263382, 0.02569593147751606, 0.023554603854389723, 0.027837259100642397, 0.029978586723768737, 0.029978586723768737, 0.029978586723768737, 0.032119914346895075, 0.032119914346895075, 0.034261241970021415, 0.03854389721627409, 0.03854389721627409, 0.04068522483940043, 0.044967880085653104, 0.047109207708779445, 0.11991434689507495, 0.49036402569593146, 0.8950749464668094], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ABC2_membrane_2.gap.json b/pfam_gap_rates/ABC2_membrane_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8082e5f1eaadb507159481bcda3c4b72ce76534
--- /dev/null
+++ b/pfam_gap_rates/ABC2_membrane_2.gap.json
@@ -0,0 +1 @@
+{"family": "ABC2_membrane_2", "n_seqs": 2425, "length": 450, "gap_rates": [0.8639175257731959, 0.674639175257732, 0.5430927835051547, 0.49567010309278353, 0.47917525773195874, 0.46350515463917524, 0.44948453608247424, 0.4416494845360825, 0.43711340206185567, 0.4329896907216495, 0.4292783505154639, 0.41896907216494844, 0.41484536082474227, 0.414020618556701, 0.40989690721649485, 0.40371134020618554, 0.40123711340206186, 0.39835051546391753, 0.39670103092783504, 0.39628865979381445, 0.39463917525773196, 0.3938144329896907, 0.3934020618556701, 0.3934020618556701, 0.39422680412371136, 0.3934020618556701, 0.3909278350515464, 0.8412371134020619, 0.8775257731958763, 0.9022680412371133, 0.9224742268041237, 0.9348453608247422, 0.9393814432989691, 0.9455670103092784, 0.948041237113402, 0.9430927835051547, 0.9377319587628866, 0.9282474226804124, 0.9158762886597939, 0.8915463917525773, 0.8655670103092783, 0.8222680412371134, 0.7430927835051546, 0.5183505154639175, 0.47876288659793814, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ABC2_membrane_5.gap.json b/pfam_gap_rates/ABC2_membrane_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1450c5ffffaa22490a752ed1551d6b759b8ff4d4
--- /dev/null
+++ b/pfam_gap_rates/ABC2_membrane_5.gap.json
@@ -0,0 +1 @@
+{"family": "ABC2_membrane_5", "n_seqs": 527, "length": 246, "gap_rates": [0.45920303605313095, 0.31309297912713474, 0.2808349146110057, 0.2637571157495256, 0.25996204933586337, 0.2314990512333966, 0.22580645161290322, 0.22580645161290322, 0.21821631878557876, 0.21062618595825428, 0.20872865275142316, 0.20872865275142316, 0.937381404174573, 0.5142314990512334, 0.4250474383301708, 0.349146110056926, 0.25426944971537, 0.20683111954459202, 0.19924098671726756, 0.19165085388994307, 0.3187855787476281, 0.20113851992409867, 0.2030360531309298, 0.15370018975332067, 0.1442125237191651, 0.15180265654648956, 0.1442125237191651, 0.17267552182163187, 0.15180265654648956, 0.1347248576850095, 0.15370018975332067, 0.1347248576850095, 0.2314990512333966, 0.9165085388994307, 0.9449715370018975, 0.9259962049335864, 0.9089184060721063, 0.2333965844402277, 0.222011385199241, 0.1859582542694497, 0.16318785578747627, 0.13092979127134724, 0.9430740037950665, 0.09108159392789374, 0.07400379506641366, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_tran.gap.json b/pfam_gap_rates/ABC_tran.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90a64ed1b02efdd1fff770c0691d8bd4dc09816d
--- /dev/null
+++ b/pfam_gap_rates/ABC_tran.gap.json
@@ -0,0 +1 @@
+{"family": "ABC_tran", "n_seqs": 5000, "length": 187, "gap_rates": [0.4862, 0.1562, 0.088, 0.0676, 0.0556, 0.0478, 0.0458, 0.0426, 0.041, 0.037, 0.0368, 0.039, 0.0306, 0.0298, 0.029, 0.028, 0.0276, 0.0272, 0.027, 0.0266, 0.0264, 0.0262, 0.026, 0.026, 0.0254, 0.025, 0.025, 0.025, 0.025, 0.0246, 0.0242, 0.0238, 0.0238, 0.024, 0.026, 0.0324, 0.0418, 0.891, 0.9474, 0.9236, 0.8776, 0.033, 0.0302, 0.029, 0.0276, 0.028, 0.113, 0.1168, 0.1212, 0.1464, 0.1444, 0.1466, 0.1464, 0.148, 0.1428, 0.7416, 0.847, 0.7828, 0.6208, 0.3596, 0.2728, 0.173, 0.1274, 0.08, 0.0384, 0.0366, 0.0328, 0.032, 0.0318, 0.0312, 0.0314, 0.0296, 0.0286, 0.0296, 0.0302, 0.86, 0.8078, 0.045, 0.0394, 0.0354, 0.0342, 0.034, 0.0374, 0.037, 0.2722, 0.051, 0.0502, 0.0508, 0.0264, 0.0472, 0.0552, 0.0766, 0.1722, 0.2368, 0.3466, 0.5946, 0.7272, 0.861, 0.8956, 0.9192, 0.931, 0.938, 0.9418, 0.9488, 0.9394, 0.9338, 0.925, 0.908, 0.8818, 0.8262, 0.6894, 0.3844, 0.2858, 0.2022, 0.123, 0.0686, 0.0508, 0.0428, 0.024, 0.0896, 0.0944, 0.0936, 0.0408, 0.9158, 0.9266, 0.9038, 0.0316, 0.0294, 0.0268, 0.026, 0.0276, 0.0276, 0.0282, 0.0278, 0.028, 0.041, 0.0536, 0.0532, 0.9068, 0.9138, 0.9182, 0.9248, 0.9164, 0.9102, 0.8924, 0.2606, 0.1962, 0.102, 0.061, 0.0528, 0.0978, 0.4864, 0.4592, 0.4364, 0.38, 0.9416, 0.0204, 0.0198, 0.0196, 0.0198, 0.02, 0.0204, 0.0208, 0.0208, 0.0206, 0.0208, 0.0208, 0.0214, 0.0214, 0.0216, 0.022, 0.0222, 0.0224, 0.0226, 0.023, 0.024, 0.0248, 0.0248, 0.0254, 0.0264, 0.0272, 0.0288, 0.0308, 0.032, 0.0436, 0.0846, 0.512], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_trans_CmpB.gap.json b/pfam_gap_rates/ABC_trans_CmpB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6da38b52a507f3610bcc31bbd139958f60e2b029
--- /dev/null
+++ b/pfam_gap_rates/ABC_trans_CmpB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_trans_aux.gap.json b/pfam_gap_rates/ABC_trans_aux.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2baf7218e94cb46f6458f64ac85ad6bb11f48b1c
--- /dev/null
+++ b/pfam_gap_rates/ABC_trans_aux.gap.json
@@ -0,0 +1 @@
+{"family": "ABC_trans_aux", "n_seqs": 577, "length": 178, "gap_rates": [0.49740034662045063, 0.4488734835355286, 0.4055459272097054, 0.5511265164644714, 0.92894280762565, 0.44714038128249567, 0.36741767764298094, 0.31022530329289427, 0.25476603119584057, 0.23743500866551126, 0.22357019064124783, 0.2097053726169844, 0.1923743500866551, 0.18717504332755633, 0.1681109185441941, 0.15077989601386482, 0.14038128249566725, 0.1559792027729636, 0.15944540727902945, 0.8596187175043327, 0.729636048526863, 0.24090121317157712, 0.1386481802426343, 0.07279029462738301, 0.07452339688041594, 0.07279029462738301, 0.07972270363951472, 0.060658578856152515, 0.045060658578856154, 0.0415944540727903, 0.038128249566724434, 0.03466204506065858, 0.03466204506065858, 0.03119584055459272, 0.03119584055459272, 0.025996533795493933, 0.025996533795493933, 0.024263431542461005, 0.024263431542461005, 0.01733102253032929, 0.01733102253032929, 0.012131715771230503, 0.010398613518197574, 0.012131715771230503, 0.9116117850953206, 0.9237435008665511, 0.8960138648180243, 0.05545927209705372, 0.008665511265164644, 0.006932409012131715, 0.006932409012131715, 0.0034662045060658577, 0.008665511265164644, 0.006932409012131715, 0.0034662045060658577, 0.008665511265164644, 0.0034662045060658577, 0.005199306759098787, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0017331022530329288, 0.0034662045060658577, 0.0034662045060658577, 0.005199306759098787, 0.010398613518197574, 0.01386481802426343, 0.01386481802426343, 0.038128249566724434, 0.1195840554592721, 0.07452339688041594, 0.04679376083188908, 0.08145580589254767, 0.058925476603119586, 0.0415944540727903, 0.036395147313691506, 0.03292894280762565, 0.03292894280762565, 0.03119584055459272, 0.587521663778163, 0.537261698440208, 0.17677642980935876, 0.043327556325823226, 0.024263431542461005, 0.012131715771230503, 0.012131715771230503, 0.012131715771230503, 0.01559792027729636, 0.012131715771230503, 0.006932409012131715, 0.005199306759098787, 0.005199306759098787, 0.005199306759098787, 0.006932409012131715, 0.006932409012131715, 0.005199306759098787, 0.005199306759098787, 0.005199306759098787, 0.005199306759098787, 0.005199306759098787, 0.729636048526863, 0.9081455805892548, 0.7920277296360485, 0.6516464471403813, 0.038128249566724434, 0.010398613518197574, 0.012131715771230503, 0.005199306759098787, 0.8734835355285961, 0.9445407279029463, 0.9064124783362218, 0.854419410745234, 0.005199306759098787, 0.006932409012131715, 0.005199306759098787, 0.005199306759098787, 0.005199306759098787, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.9306759098786829, 0.9116117850953206, 0.09012131715771231, 0.058925476603119586, 0.03292894280762565, 0.04852686308492201, 0.28596187175043325, 0.9410745233968805, 0.06412478336221837, 0.025996533795493933, 0.01559792027729636, 0.012131715771230503, 0.012131715771230503, 0.01386481802426343, 0.14731369150779897, 0.01386481802426343, 0.010398613518197574, 0.010398613518197574, 0.010398613518197574, 0.010398613518197574, 0.010398613518197574, 0.010398613518197574, 0.012131715771230503, 0.13344887348353554, 0.019064124783362217, 0.01733102253032929, 0.012131715771230503, 0.012131715771230503, 0.01386481802426343, 0.01386481802426343, 0.01386481802426343, 0.01386481802426343, 0.01386481802426343, 0.01386481802426343, 0.01386481802426343, 0.01733102253032929, 0.019064124783362217, 0.029462738301559793, 0.038128249566724434, 0.05025996533795494, 0.07279029462738301, 0.11091854419410745, 0.14904679376083188, 0.2270363951473137, 0.4696707105719237], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ACT_3.gap.json b/pfam_gap_rates/ACT_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be67180ce85d7cf4ea253e1e93eea421c270f374
--- /dev/null
+++ b/pfam_gap_rates/ACT_3.gap.json
@@ -0,0 +1 @@
+{"family": "ACT_3", "n_seqs": 130, "length": 75, "gap_rates": [0.4153846153846154, 0.23076923076923078, 0.17692307692307693, 0.13846153846153847, 0.1, 0.1, 0.09230769230769231, 0.08461538461538462, 0.06923076923076923, 0.06153846153846154, 0.046153846153846156, 0.038461538461538464, 0.015384615384615385, 0.015384615384615385, 0.023076923076923078, 0.023076923076923078, 0.03076923076923077, 0.046153846153846156, 0.038461538461538464, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.8461538461538461, 0.1, 0.08461538461538462, 0.3076923076923077, 0.19230769230769232, 0.13846153846153847, 0.06923076923076923, 0.05384615384615385, 0.038461538461538464, 0.046153846153846156, 0.038461538461538464, 0.046153846153846156, 0.023076923076923078, 0.8769230769230769, 0.8769230769230769, 0.8769230769230769, 0.8538461538461538, 0.007692307692307693, 0.007692307692307693, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.03076923076923077, 0.038461538461538464, 0.06923076923076923, 0.08461538461538462, 0.09230769230769231, 0.09230769230769231, 0.1, 0.1, 0.13846153846153847, 0.2076923076923077, 0.5384615384615384], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ADAM_CR.gap.json b/pfam_gap_rates/ADAM_CR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba90ccc9427048746a6b3b9ec1f526bdfb54d58d
--- /dev/null
+++ b/pfam_gap_rates/ADAM_CR.gap.json
@@ -0,0 +1 @@
+{"family": "ADAM_CR", "n_seqs": 522, "length": 132, "gap_rates": [0.11877394636015326, 0.08045977011494253, 0.07662835249042145, 0.06513409961685823, 0.05747126436781609, 0.05555555555555555, 0.040229885057471264, 0.3486590038314176, 0.89272030651341, 0.06704980842911877, 0.02490421455938697, 0.02490421455938697, 0.0210727969348659, 0.0210727969348659, 0.0210727969348659, 0.0210727969348659, 0.019157088122605363, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.013409961685823755, 0.013409961685823755, 0.013409961685823755, 0.017241379310344827, 0.013409961685823755, 0.013409961685823755, 0.013409961685823755, 0.01532567049808429, 0.032567049808429116, 0.038314176245210725, 0.0421455938697318, 0.0210727969348659, 0.013409961685823755, 0.013409961685823755, 0.022988505747126436, 0.013409961685823755, 0.01532567049808429, 0.013409961685823755, 0.013409961685823755, 0.2720306513409962, 0.02681992337164751, 0.0210727969348659, 0.022988505747126436, 0.02490421455938697, 0.022988505747126436, 0.02490421455938697, 0.02681992337164751, 0.03065134099616858, 0.02681992337164751, 0.0210727969348659, 0.017241379310344827, 0.019157088122605363, 0.0210727969348659, 0.03639846743295019, 0.30842911877394635, 0.9482758620689655, 0.8045977011494253, 0.2222222222222222, 0.08812260536398467, 0.08812260536398467, 0.06513409961685823, 0.9348659003831418, 0.9252873563218391, 0.04597701149425287, 0.038314176245210725, 0.038314176245210725, 0.03065134099616858, 0.03065134099616858, 0.034482758620689655, 0.04789272030651341, 0.05555555555555555, 0.06130268199233716, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05938697318007663, 0.05938697318007663, 0.05938697318007663, 0.05938697318007663, 0.06321839080459771, 0.06321839080459771, 0.06896551724137931, 0.07279693486590039, 0.08045977011494253, 0.08237547892720307, 0.1781609195402299, 0.1053639846743295, 0.11877394636015326, 0.1475095785440613, 0.15134099616858238, 0.8467432950191571, 0.9367816091954023, 0.7873563218390804, 0.16666666666666666, 0.1743295019157088, 0.16475095785440613, 0.17049808429118773, 0.1724137931034483, 0.1724137931034483, 0.1743295019157088, 0.18007662835249041, 0.18773946360153257, 0.7030651340996169, 0.20881226053639848, 0.23180076628352492, 0.1896551724137931, 0.5689655172413793, 0.8448275862068966, 0.9310344827586207, 0.6264367816091954, 0.5651340996168582, 0.18773946360153257, 0.19348659003831417, 0.19540229885057472, 0.2049808429118774, 0.2413793103448276, 0.29118773946360155, 0.3333333333333333, 0.921455938697318, 0.9482758620689655, 0.553639846743295, 0.39272030651340994, 0.4501915708812261, 0.5229885057471264, 0.553639846743295, 0.5670498084291188, 0.5919540229885057, 0.7164750957854407, 0.9022988505747126], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ADC.gap.json b/pfam_gap_rates/ADC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fbea0a73648dd3e6cbc5d23c5cce8d7618ae3db
--- /dev/null
+++ b/pfam_gap_rates/ADC.gap.json
@@ -0,0 +1 @@
+{"family": "ADC", "n_seqs": 410, "length": 320, "gap_rates": [0.9365853658536586, 0.6439024390243903, 0.5975609756097561, 0.5951219512195122, 0.751219512195122, 0.6439024390243903, 0.5951219512195122, 0.6121951219512195, 0.6951219512195121, 0.6829268292682927, 0.6804878048780488, 0.6658536585365854, 0.5439024390243903, 0.5365853658536586, 0.524390243902439, 0.5048780487804878, 0.8121951219512196, 0.6585365853658537, 0.33902439024390246, 0.5097560975609756, 0.7536585365853659, 0.9170731707317074, 0.926829268292683, 0.8926829268292683, 0.5707317073170731, 0.4317073170731707, 0.23170731707317074, 0.2073170731707317, 0.1951219512195122, 0.17804878048780487, 0.17073170731707318, 0.15853658536585366, 0.15365853658536585, 0.14634146341463414, 0.14390243902439023, 0.13658536585365855, 0.13170731707317074, 0.12682926829268293, 0.12195121951219512, 0.11707317073170732, 0.12926829268292683, 0.11463414634146342, 0.10975609756097561, 0.1024390243902439, 0.1, 0.09024390243902439, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ADK.gap.json b/pfam_gap_rates/ADK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bcc41c56cc76f7c9bc768c1225b1c8a2e9b2bab8
--- /dev/null
+++ b/pfam_gap_rates/ADK.gap.json
@@ -0,0 +1 @@
+{"family": "ADK", "n_seqs": 4530, "length": 193, "gap_rates": [0.23752759381898456, 0.10022075055187638, 0.0922737306843267, 0.08896247240618102, 0.0880794701986755, 0.08719646799116998, 0.08675496688741721, 0.08565121412803532, 0.08498896247240618, 0.08454746136865342, 0.0836644591611479, 0.08300220750551876, 0.0814569536423841, 0.08123620309050773, 0.08079470198675497, 0.07947019867549669, 0.07902869757174392, 0.07704194260485651, 0.07571743929359824, 0.07571743929359824, 0.07483443708609272, 0.07505518763796909, 0.07483443708609272, 0.07527593818984547, 0.07461368653421634, 0.0728476821192053, 0.07196467991169977, 0.0717439293598234, 0.07041942604856512, 0.06644591611479028, 0.06600441501103753, 0.06622516556291391, 0.06688741721854305, 0.07086092715231788, 0.0706401766004415, 0.9273730684326711, 0.06865342163355409, 0.07041942604856512, 0.06931567328918323, 0.07196467991169977, 0.07086092715231788, 0.06799116997792494, 0.06622516556291391, 0.0565121412803532, 0.05121412803532009, 0.05011037527593819, 0.048344370860927154, 0.05011037527593819, 0.047240618101545256, 0.04481236203090508, 0.04326710816777042, 0.04105960264900662, 0.0390728476821192, 0.037969094922737305, 0.03818984547461369, 0.037527593818984545, 0.03532008830022075, 0.03487858719646799, 0.03421633554083885, 0.03399558498896247, 0.033554083885209716, 0.03377483443708609, 0.033554083885209716, 0.03289183222958057, 0.032671081677704196, 0.032229580573951436, 0.03200883002207505, 0.03333333333333333, 0.032229580573951436, 0.0315673289183223, 0.033554083885209716, 0.03443708609271523, 0.9105960264900662, 0.7448123620309051, 0.16622516556291392, 0.06335540838852097, 0.0434878587196468, 0.03532008830022075, 0.02913907284768212, 0.02803532008830022, 0.02803532008830022, 0.029359823399558498, 0.029580573951434878, 0.029801324503311258, 0.03090507726269316, 0.030463576158940398, 0.03068432671081678, 0.031125827814569535, 0.03200883002207505, 0.032671081677704196, 0.032671081677704196, 0.032671081677704196, 0.032671081677704196, 0.033112582781456956, 0.033554083885209716, 0.03554083885209713, 0.03576158940397351, 0.42008830022075055, 0.4169977924944812, 0.452317880794702, 0.4108167770419426, 0.16379690949227374, 0.06975717439293598, 0.06710816777041943, 0.05518763796909492, 0.055408388520971304, 0.05894039735099338, 0.055408388520971304, 0.05518763796909492, 0.05452538631346578, 0.05562913907284768, 0.05474613686534217, 0.055408388520971304, 0.05518763796909492, 0.05562913907284768, 0.055408388520971304, 0.055408388520971304, 0.055849889624724064, 0.055408388520971304, 0.05562913907284768, 0.055849889624724064, 0.05518763796909492, 0.0576158940397351, 0.05673289183222958, 0.0576158940397351, 0.07262693156732891, 0.0781456953642384, 0.12494481236203091, 0.17306843267108168, 0.3315673289183223, 0.3706401766004415, 0.3847682119205298, 0.4041942604856512, 0.40684326710816776, 0.40816777041942603, 0.4099337748344371, 0.4112582781456954, 0.4139072847682119, 0.41567328918322294, 0.42185430463576157, 0.4448123620309051, 0.48741721854304637, 0.5145695364238411, 0.9267108167770419, 0.9481236203090507, 0.941280353200883, 0.8710816777041943, 0.49514348785871964, 0.47991169977924947, 0.42869757174392936, 0.41611479028697573, 0.41456953642384103, 0.4130242825607064, 0.4101545253863135, 0.40905077262693157, 0.4075055187637969, 0.4052980132450331, 0.3880794701986755, 0.37637969094922735, 0.35717439293598235, 0.18035320088300222, 0.13863134657836645, 0.08079470198675497, 0.076158940397351, 0.07218543046357616, 0.06114790286975717, 0.0739514348785872, 0.07262693156732891, 0.0728476821192053, 0.0739514348785872, 0.07439293598233995, 0.07461368653421634, 0.07571743929359824, 0.07505518763796909, 0.07549668874172186, 0.07660044150110375, 0.07792494481236203, 0.07991169977924945, 0.0814569536423841, 0.08454746136865342, 0.0858719646799117, 0.0880794701986755, 0.08940397350993377, 0.09448123620309051, 0.0988962472406181, 0.10264900662251655, 0.1055187637969095, 0.1097130242825607, 0.11456953642384106, 0.1291390728476821, 0.16490066225165562, 0.2479028697571744, 0.43973509933774835], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AGP.gap.json b/pfam_gap_rates/AGP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d0c31f03afb51aaa25c4a0cce7f3330bfa68dda
--- /dev/null
+++ b/pfam_gap_rates/AGP.gap.json
@@ -0,0 +1 @@
+{"family": "AGP", "n_seqs": 127, "length": 36, "gap_rates": [0.3228346456692913, 0.18110236220472442, 0.12598425196850394, 0.11811023622047244, 0.7716535433070866, 0.6299212598425197, 0.5748031496062992, 0.031496062992125984, 0.031496062992125984, 0.05511811023622047, 0.047244094488188976, 0.023622047244094488, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015748031496062992, 0.023622047244094488, 0.023622047244094488, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.047244094488188976], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ALG11_N.gap.json b/pfam_gap_rates/ALG11_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37c4623952917a97ea95c33234465b149e8898d9
--- /dev/null
+++ b/pfam_gap_rates/ALG11_N.gap.json
@@ -0,0 +1 @@
+{"family": "ALG11_N", "n_seqs": 329, "length": 218, "gap_rates": [0.6474164133738601, 0.19756838905775076, 0.16109422492401215, 0.1580547112462006, 0.1580547112462006, 0.1580547112462006, 0.1580547112462006, 0.1580547112462006, 0.15501519756838905, 0.14893617021276595, 0.1398176291793313, 0.1398176291793313, 0.13677811550151975, 0.13677811550151975, 0.13677811550151975, 0.13677811550151975, 0.13677811550151975, 0.13677811550151975, 0.13677811550151975, 0.1337386018237082, 0.1337386018237082, 0.1337386018237082, 0.13677811550151975, 0.13677811550151975, 0.13677811550151975, 0.13677811550151975, 0.13677811550151975, 0.1398176291793313, 0.13677811550151975, 0.1398176291793313, 0.13677811550151975, 0.13069908814589665, 0.11550151975683891, 0.9361702127659575, 0.9483282674772037, 0.939209726443769, 0.9361702127659575, 0.11854103343465046, 0.11550151975683891, 0.11550151975683891, 0.11854103343465046, 0.11854103343465046, 0.11854103343465046, 0.11854103343465046, 0.11854103343465046, 0.11854103343465046, 0.2796352583586626, 0.9452887537993921, 0.12462006079027356, 0.12462006079027356, 0.12462006079027356, 0.12462006079027356, 0.12462006079027356, 0.12462006079027356, 0.12462006079027356, 0.12158054711246201, 0.12158054711246201, 0.12158054711246201, 0.12158054711246201, 0.12158054711246201, 0.12158054711246201, 0.12462006079027356, 0.1276595744680851, 0.12158054711246201, 0.12158054711246201, 0.11854103343465046, 0.11854103343465046, 0.11854103343465046, 0.12158054711246201, 0.9240121580547113, 0.8936170212765957, 0.3799392097264438, 0.11550151975683891, 0.1094224924012158, 0.1094224924012158, 0.1094224924012158, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.9483282674772037, 0.11246200607902736, 0.11550151975683891, 0.11246200607902736, 0.11246200607902736, 0.11246200607902736, 0.1094224924012158, 0.11246200607902736, 0.12462006079027356, 0.12462006079027356, 0.11854103343465046, 0.11854103343465046, 0.11854103343465046, 0.11550151975683891, 0.10638297872340426, 0.1033434650455927, 0.1033434650455927, 0.10030395136778116, 0.1033434650455927, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.0972644376899696, 0.0972644376899696, 0.0972644376899696, 0.0972644376899696, 0.0972644376899696, 0.0972644376899696, 0.09422492401215805, 0.09422492401215805, 0.09422492401215805, 0.09422492401215805, 0.10030395136778116, 0.0972644376899696, 0.08814589665653495, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.0851063829787234, 0.1398176291793313, 0.0851063829787234, 0.18541033434650456, 0.7507598784194529, 0.09422492401215805, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.08206686930091185, 0.08206686930091185, 0.08206686930091185, 0.0851063829787234, 0.0851063829787234, 0.17933130699088146, 0.939209726443769, 0.14285714285714285, 0.16717325227963525, 0.16717325227963525, 0.1519756838905775, 0.1519756838905775, 0.14893617021276595, 0.14893617021276595, 0.14893617021276595, 0.14893617021276595, 0.14893617021276595, 0.14285714285714285, 0.1337386018237082, 0.11550151975683891, 0.1033434650455927, 0.0972644376899696, 0.09422492401215805, 0.08814589665653495, 0.07598784194528875, 0.07598784194528875, 0.0790273556231003, 0.0790273556231003, 0.07598784194528875, 0.0790273556231003, 0.0790273556231003, 0.0851063829787234, 0.0851063829787234, 0.08206686930091185, 0.08206686930091185, 0.08206686930091185, 0.08206686930091185, 0.0790273556231003, 0.0790273556231003, 0.08206686930091185, 0.08206686930091185, 0.08206686930091185, 0.08206686930091185, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.08814589665653495, 0.08814589665653495, 0.08814589665653495, 0.09422492401215805, 0.0972644376899696, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.10030395136778116, 0.1033434650455927, 0.1033434650455927, 0.1033434650455927, 0.10638297872340426, 0.2127659574468085], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ALO.gap.json b/pfam_gap_rates/ALO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3aa93ee1c18403a5e6328c75bbd493385bcc30f5
--- /dev/null
+++ b/pfam_gap_rates/ALO.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AMNp_N.gap.json b/pfam_gap_rates/AMNp_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8d7c5bdf471803ff3fe0a50aa2c7eb9fe9fa983
--- /dev/null
+++ b/pfam_gap_rates/AMNp_N.gap.json
@@ -0,0 +1 @@
+{"family": "AMNp_N", "n_seqs": 226, "length": 167, "gap_rates": [0.26991150442477874, 0.030973451327433628, 0.022123893805309734, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.022123893805309734, 0.022123893805309734, 0.07964601769911504, 0.07964601769911504, 0.0752212389380531, 0.06637168141592921, 0.02654867256637168, 0.030973451327433628, 0.048672566371681415, 0.07079646017699115, 0.6548672566371682, 0.09292035398230089, 0.02654867256637168, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.02654867256637168, 0.8185840707964602, 0.8141592920353983, 0.7345132743362832, 0.668141592920354, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.02654867256637168, 0.022123893805309734, 0.9292035398230089, 0.9424778761061947, 0.6371681415929203, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.03982300884955752, 0.017699115044247787, 0.017699115044247787, 0.022123893805309734, 0.588495575221239, 0.43805309734513276, 0.8053097345132744, 0.8053097345132744, 0.02654867256637168, 0.01327433628318584, 0.008849557522123894, 0.01327433628318584, 0.01327433628318584, 0.017699115044247787, 0.01327433628318584, 0.004424778761061947, 0.5752212389380531, 0.5973451327433629, 0.588495575221239, 0.5707964601769911, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.01327433628318584, 0.008849557522123894, 0.008849557522123894, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.04424778761061947, 0.11061946902654868, 0.11504424778761062, 0.17256637168141592, 0.26548672566371684, 0.38495575221238937, 0.6327433628318584], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AP2.gap.json b/pfam_gap_rates/AP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6762379215a3fce52cdca9512bb250fb8fade6e
--- /dev/null
+++ b/pfam_gap_rates/AP2.gap.json
@@ -0,0 +1 @@
+{"family": "AP2", "n_seqs": 5000, "length": 61, "gap_rates": [0.567, 0.2244, 0.072, 0.0482, 0.0326, 0.028, 0.023, 0.02, 0.0178, 0.014, 0.6012, 0.0658, 0.0142, 0.0084, 0.008, 0.0078, 0.0072, 0.007, 0.8464, 0.9394, 0.852, 0.7684, 0.0062, 0.112, 0.0982, 0.8386, 0.5024, 0.204, 0.4404, 0.6844, 0.5866, 0.3598, 0.1266, 0.0042, 0.0016, 0.0082, 0.007, 0.007, 0.0026, 0.006, 0.0038, 0.0042, 0.0064, 0.1362, 0.0076, 0.0074, 0.0078, 0.0096, 0.012, 0.0134, 0.0158, 0.0278, 0.038, 0.058, 0.0682, 0.0826, 0.107, 0.1358, 0.1838, 0.2366, 0.937], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/APG9.gap.json b/pfam_gap_rates/APG9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d56d31bf8320a29d6ff187cdb0a7c2ad1f70ca5c
--- /dev/null
+++ b/pfam_gap_rates/APG9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/APP_E2.gap.json b/pfam_gap_rates/APP_E2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e675b7766ac901f2c8c39588f2eadc423e2bfb5
--- /dev/null
+++ b/pfam_gap_rates/APP_E2.gap.json
@@ -0,0 +1 @@
+{"family": "APP_E2", "n_seqs": 113, "length": 196, "gap_rates": [0.8407079646017699, 0.49557522123893805, 0.3805309734513274, 0.34513274336283184, 0.3008849557522124, 0.25663716814159293, 0.20353982300884957, 0.19469026548672566, 0.168141592920354, 0.1504424778761062, 0.1504424778761062, 0.1504424778761062, 0.1504424778761062, 0.1504424778761062, 0.1504424778761062, 0.1504424778761062, 0.1415929203539823, 0.13274336283185842, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.13274336283185842, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.09734513274336283, 0.09734513274336283, 0.10619469026548672, 0.10619469026548672, 0.08849557522123894, 0.08849557522123894, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.11504424778761062, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.5663716814159292, 0.5663716814159292, 0.5663716814159292, 0.5663716814159292, 0.5663716814159292, 0.5663716814159292, 0.5663716814159292, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.8672566371681416, 0.8230088495575221, 0.07964601769911504, 0.07964601769911504, 0.08849557522123894, 0.08849557522123894, 0.07964601769911504, 0.07079646017699115, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.9380530973451328, 0.9469026548672567, 0.9469026548672567, 0.9380530973451328, 0.11504424778761062, 0.12389380530973451, 0.13274336283185842, 0.12389380530973451, 0.12389380530973451, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.12389380530973451, 0.1415929203539823, 0.1504424778761062, 0.1504424778761062, 0.1592920353982301, 0.1592920353982301, 0.168141592920354, 0.168141592920354, 0.17699115044247787, 0.18584070796460178, 0.19469026548672566, 0.19469026548672566, 0.19469026548672566, 0.19469026548672566, 0.20353982300884957, 0.21238938053097345, 0.21238938053097345, 0.21238938053097345, 0.23008849557522124], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AP_endonuc_2.gap.json b/pfam_gap_rates/AP_endonuc_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cab2cfa88bfd4d2b448710f826278f1c1de5f540
--- /dev/null
+++ b/pfam_gap_rates/AP_endonuc_2.gap.json
@@ -0,0 +1 @@
+{"family": "AP_endonuc_2", "n_seqs": 5000, "length": 284, "gap_rates": [0.7636, 0.4672, 0.3344, 0.2604, 0.2338, 0.21, 0.1942, 0.1818, 0.1732, 0.1684, 0.161, 0.1556, 0.153, 0.1504, 0.148, 0.1458, 0.1458, 0.144, 0.144, 0.1416, 0.1388, 0.1386, 0.233, 0.4358, 0.5054, 0.6336, 0.8506, 0.9186, 0.9254, 0.8966, 0.7854, 0.5746, 0.496, 0.4128, 0.3532, 0.2924, 0.2236, 0.1188, 0.087, 0.0822, 0.0794, 0.0742, 0.0714, 0.0676, 0.067, 0.0652, 0.0636, 0.0632, 0.0622, 0.0624, 0.1588, 0.1436, 0.1154, 0.1046, 0.0904, 0.083, 0.0784, 0.0782, 0.0776, 0.078, 0.0786, 0.0812, 0.1402, 0.1562, 0.1742, 0.381, 0.8438, 0.8874, 0.9252, 0.9374, 0.9478, 0.9408, 0.9334, 0.9158, 0.8678, 0.8054, 0.5054, 0.4144, 0.3152, 0.2876, 0.1684, 0.781, 0.9336, 0.8398, 0.5558, 0.4522, 0.4274, 0.4004, 0.3742, 0.065, 0.05, 0.0414, 0.0354, 0.0302, 0.0258, 0.0252, 0.0248, 0.0234, 0.023, 0.023, 0.0228, 0.0224, 0.022, 0.024, 0.0228, 0.0224, 0.0226, 0.0218, 0.0218, 0.0216, 0.0214, 0.124, 0.1104, 0.652, 0.758, 0.813, 0.8374, 0.8664, 0.9184, 0.939, 0.9468, 0.9238, 0.9098, 0.854, 0.8264, 0.7958, 0.736, 0.6308, 0.4884, 0.2126, 0.1582, 0.1152, 0.099, 0.0822, 0.0776, 0.0698, 0.0356, 0.9064, 0.948, 0.9316, 0.8786, 0.0342, 0.0306, 0.0286, 0.0242, 0.0232, 0.0226, 0.017, 0.014, 0.014, 0.0126, 0.0118, 0.0112, 0.01, 0.0138, 0.0118, 0.0118, 0.1448, 0.1674, 0.0556, 0.0368, 0.0182, 0.9398, 0.9272, 0.0104, 0.0076, 0.0068, 0.0062, 0.0066, 0.0066, 0.0066, 0.0068, 0.0066, 0.0066, 0.0068, 0.009, 0.0538, 0.1414, 0.0728, 0.0804, 0.3898, 0.5476, 0.8108, 0.9456, 0.8716, 0.796, 0.4856, 0.0246, 0.013, 0.0102, 0.008, 0.0074, 0.0072, 0.0074, 0.008, 0.0074, 0.0084, 0.0096, 0.0808, 0.1106, 0.105, 0.7584, 0.0102, 0.008, 0.0078, 0.008, 0.0084, 0.0086, 0.0092, 0.0106, 0.013, 0.013, 0.014, 0.0172, 0.0178, 0.7198, 0.764, 0.855, 0.9334, 0.8426, 0.733, 0.6576, 0.0732, 0.038, 0.0324, 0.0334, 0.0344, 0.0312, 0.0318, 0.032, 0.0326, 0.0392, 0.042, 0.0446, 0.044, 0.0444, 0.7618, 0.8272, 0.8304, 0.8088, 0.7406, 0.0458, 0.0458, 0.0458, 0.0464, 0.0468, 0.0494, 0.1114, 0.1054, 0.109, 0.1192, 0.1248, 0.739, 0.7876, 0.832, 0.852, 0.8716, 0.8786, 0.9372, 0.9492, 0.8808, 0.8744, 0.8656, 0.8432, 0.8208, 0.7686, 0.704, 0.4798, 0.5242, 0.4976, 0.4578, 0.355, 0.3376, 0.3446, 0.3502, 0.3256, 0.3338, 0.3478, 0.3564, 0.3692, 0.3864, 0.405, 0.5094, 0.6842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ASF1_hist_chap.gap.json b/pfam_gap_rates/ASF1_hist_chap.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa54c81915d0b6c0f7681efc236c83176977b3e3
--- /dev/null
+++ b/pfam_gap_rates/ASF1_hist_chap.gap.json
@@ -0,0 +1 @@
+{"family": "ASF1_hist_chap", "n_seqs": 425, "length": 155, "gap_rates": [0.28941176470588237, 0.23058823529411765, 0.17176470588235293, 0.14352941176470588, 0.1411764705882353, 0.13647058823529412, 0.13411764705882354, 0.12705882352941175, 0.12705882352941175, 0.12705882352941175, 0.11764705882352941, 0.11764705882352941, 0.9411764705882353, 0.11764705882352941, 0.11529411764705882, 0.11529411764705882, 0.11294117647058824, 0.11529411764705882, 0.11294117647058824, 0.11058823529411765, 0.11058823529411765, 0.10823529411764705, 0.10823529411764705, 0.10588235294117647, 0.10352941176470588, 0.10588235294117647, 0.10588235294117647, 0.10588235294117647, 0.10588235294117647, 0.10588235294117647, 0.10352941176470588, 0.10823529411764705, 0.10352941176470588, 0.10352941176470588, 0.10352941176470588, 0.10352941176470588, 0.08470588235294117, 0.08, 0.07294117647058823, 0.08235294117647059, 0.07294117647058823, 0.07294117647058823, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07529411764705882, 0.07294117647058823, 0.06823529411764706, 0.07294117647058823, 0.08941176470588236, 0.08705882352941176, 0.08705882352941176, 0.08235294117647059, 0.07058823529411765, 0.06352941176470588, 0.06352941176470588, 0.06352941176470588, 0.0611764705882353, 0.06352941176470588, 0.06352941176470588, 0.0611764705882353, 0.0611764705882353, 0.0611764705882353, 0.06352941176470588, 0.06352941176470588, 0.06588235294117648, 0.0611764705882353, 0.06823529411764706, 0.06588235294117648, 0.06588235294117648, 0.0611764705882353, 0.05176470588235294, 0.05176470588235294, 0.05176470588235294, 0.04941176470588235, 0.04, 0.03294117647058824, 0.03764705882352941, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.03764705882352941, 0.03529411764705882, 0.058823529411764705, 0.058823529411764705, 0.03764705882352941, 0.04, 0.04, 0.04, 0.03764705882352941, 0.03764705882352941, 0.04, 0.04, 0.04, 0.04, 0.042352941176470586, 0.04470588235294118, 0.04470588235294118, 0.047058823529411764, 0.047058823529411764, 0.04941176470588235, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.047058823529411764, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.047058823529411764, 0.04941176470588235, 0.05176470588235294, 0.05411764705882353, 0.08705882352941176, 0.09176470588235294, 0.1011764705882353, 0.1011764705882353, 0.09411764705882353, 0.08941176470588236, 0.09176470588235294, 0.09176470588235294, 0.08941176470588236, 0.08941176470588236, 0.08941176470588236, 0.08941176470588236, 0.09176470588235294, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09647058823529411, 0.10588235294117647, 0.10588235294117647, 0.10823529411764705, 0.10823529411764705, 0.19294117647058823, 0.11294117647058824, 0.11058823529411765, 0.11058823529411765, 0.11529411764705882, 0.11764705882352941, 0.12470588235294118, 0.12705882352941175, 0.12941176470588237, 0.12705882352941175, 0.12, 0.12, 0.1223529411764706, 0.3905882352941176], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ASXH.gap.json b/pfam_gap_rates/ASXH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfc582cfd027c7400600d5399a65758608d5fce8
--- /dev/null
+++ b/pfam_gap_rates/ASXH.gap.json
@@ -0,0 +1 @@
+{"family": "ASXH", "n_seqs": 215, "length": 173, "gap_rates": [0.8418604651162791, 0.7116279069767442, 0.586046511627907, 0.5069767441860465, 0.4418604651162791, 0.34418604651162793, 0.3116279069767442, 0.2837209302325581, 0.2558139534883721, 0.23255813953488372, 0.17674418604651163, 0.14883720930232558, 0.12093023255813953, 0.11162790697674418, 0.09767441860465116, 0.08837209302325581, 0.08837209302325581, 0.09302325581395349, 0.08372093023255814, 0.08372093023255814, 0.07441860465116279, 0.07441860465116279, 0.07441860465116279, 0.07441860465116279, 0.06046511627906977, 0.046511627906976744, 0.04186046511627907, 0.037209302325581395, 0.037209302325581395, 0.04186046511627907, 0.037209302325581395, 0.03255813953488372, 0.03255813953488372, 0.046511627906976744, 0.7302325581395349, 0.037209302325581395, 0.03255813953488372, 0.03255813953488372, 0.9255813953488372, 0.027906976744186046, 0.023255813953488372, 0.023255813953488372, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.9302325581395349, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.8883720930232558, 0.9023255813953488, 0.9069767441860465, 0.9209302325581395, 0.9441860465116279, 0.9441860465116279, 0.9488372093023256, 0.9441860465116279, 0.9209302325581395, 0.9116279069767442, 0.9069767441860465, 0.9023255813953488, 0.8883720930232558, 0.4790697674418605, 0.5209302325581395, 0.6558139534883721, 0.15813953488372093, 0.813953488372093, 0.8744186046511628, 0.9023255813953488, 0.9162790697674419, 0.9348837209302325, 0.9255813953488372, 0.9116279069767442, 0.8930232558139535, 0.8418604651162791, 0.8093023255813954, 0.2, 0.4790697674418605, 0.4232558139534884, 0.3488372093023256, 0.3302325581395349, 0.2930232558139535, 0.24186046511627907, 0.22325581395348837, 0.22790697674418606, 0.9302325581395349, 0.06976744186046512, 0.037209302325581395, 0.023255813953488372, 0.05581395348837209, 0.06511627906976744, 0.8511627906976744, 0.9441860465116279, 0.8093023255813954, 0.5209302325581395, 0.4372093023255814, 0.4232558139534884, 0.4046511627906977, 0.009302325581395349, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.009302325581395349, 0.14883720930232558, 0.8651162790697674, 0.9395348837209302, 0.9162790697674419, 0.5488372093023256, 0.09767441860465116, 0.08837209302325581, 0.2, 0.19069767441860466, 0.17674418604651163, 0.15813953488372093, 0.15813953488372093, 0.16279069767441862, 0.16744186046511628, 0.17674418604651163, 0.18604651162790697, 0.19534883720930232, 0.19534883720930232, 0.9488372093023256, 0.20465116279069767, 0.22325581395348837, 0.4883720930232558, 0.23255813953488372, 0.22790697674418606, 0.2186046511627907, 0.9348837209302325, 0.9348837209302325, 0.9395348837209302, 0.9348837209302325, 0.9209302325581395, 0.21395348837209302, 0.21395348837209302, 0.21395348837209302, 0.21395348837209302, 0.21395348837209302, 0.21395348837209302, 0.21395348837209302, 0.2186046511627907, 0.22325581395348837, 0.22790697674418606, 0.24651162790697675, 0.3302325581395349, 0.4744186046511628], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-grasp_3.gap.json b/pfam_gap_rates/ATP-grasp_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..895868253083e72b92e446a8d71b57cfe2575e5b
--- /dev/null
+++ b/pfam_gap_rates/ATP-grasp_3.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-grasp_3", "n_seqs": 693, "length": 218, "gap_rates": [0.6623376623376623, 0.455988455988456, 0.2857142857142857, 0.26551226551226553, 0.26262626262626265, 0.2554112554112554, 0.2453102453102453, 0.240981240981241, 0.227994227994228, 0.21356421356421357, 0.2049062049062049, 0.19336219336219337, 0.18759018759018758, 0.18614718614718614, 0.24242424242424243, 0.18037518037518038, 0.17316017316017315, 0.16161616161616163, 0.15873015873015872, 0.5974025974025974, 0.6854256854256854, 0.7474747474747475, 0.9148629148629148, 0.8412698412698413, 0.7012987012987013, 0.6392496392496393, 0.5512265512265512, 0.3492063492063492, 0.33766233766233766, 0.30447330447330445, 0.2698412698412698, 0.26695526695526695, 0.23665223665223664, 0.20923520923520925, 0.20202020202020202, 0.19480519480519481, 0.18326118326118326, 0.10966810966810966, 0.6955266955266955, 0.759018759018759, 0.8196248196248196, 0.9437229437229437, 0.8701298701298701, 0.8066378066378066, 0.733044733044733, 0.6479076479076479, 0.09235209235209235, 0.08802308802308802, 0.07647907647907648, 0.0735930735930736, 0.07215007215007214, 0.07215007215007214, 0.07215007215007214, 0.0707070707070707, 0.06493506493506493, 0.06493506493506493, 0.0707070707070707, 0.0707070707070707, 0.06493506493506493, 0.06060606060606061, 0.06060606060606061, 0.05916305916305916, 0.05916305916305916, 0.06060606060606061, 0.05916305916305916, 0.05772005772005772, 0.05483405483405483, 0.05483405483405483, 0.05483405483405483, 0.08946608946608947, 0.07503607503607504, 0.07215007215007214, 0.07215007215007214, 0.17027417027417027, 0.12987012987012986, 0.09956709956709957, 0.09668109668109669, 0.11976911976911978, 0.11832611832611832, 0.07792207792207792, 0.24242424242424243, 0.47619047619047616, 0.6204906204906205, 0.7647907647907648, 0.8686868686868687, 0.9148629148629148, 0.9321789321789322, 0.9437229437229437, 0.9408369408369408, 0.924963924963925, 0.8874458874458875, 0.8297258297258298, 0.7258297258297258, 0.5670995670995671, 0.42424242424242425, 0.2178932178932179, 0.027417027417027416, 0.01875901875901876, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.01875901875901876, 0.020202020202020204, 0.01443001443001443, 0.01443001443001443, 0.015873015873015872, 0.015873015873015872, 0.01875901875901876, 0.017316017316017316, 0.01443001443001443, 0.01443001443001443, 0.015873015873015872, 0.05339105339105339, 0.027417027417027416, 0.10678210678210678, 0.0836940836940837, 0.06926406926406926, 0.06493506493506493, 0.05483405483405483, 0.05772005772005772, 0.049062049062049064, 0.05627705627705628, 0.06349206349206349, 0.06637806637806638, 0.06782106782106782, 0.05916305916305916, 0.06493506493506493, 0.23665223665223664, 0.31457431457431456, 0.5339105339105339, 0.4906204906204906, 0.4531024531024531, 0.3968253968253968, 0.7777777777777778, 0.8686868686868687, 0.8961038961038961, 0.9163059163059163, 0.9278499278499278, 0.9365079365079365, 0.9408369408369408, 0.9466089466089466, 0.948051948051948, 0.9422799422799423, 0.9393939393939394, 0.935064935064935, 0.9235209235209235, 0.9047619047619048, 0.8888888888888888, 0.8167388167388168, 0.6955266955266955, 0.16161616161616163, 0.113997113997114, 0.09956709956709957, 0.07792207792207792, 0.0735930735930736, 0.06782106782106782, 0.05483405483405483, 0.05916305916305916, 0.05772005772005772, 0.05627705627705628, 0.05627705627705628, 0.12121212121212122, 0.10101010101010101, 0.06637806637806638, 0.8008658008658008, 0.9321789321789322, 0.7287157287157288, 0.05483405483405483, 0.05339105339105339, 0.050505050505050504, 0.050505050505050504, 0.049062049062049064, 0.049062049062049064, 0.05194805194805195, 0.049062049062049064, 0.05339105339105339, 0.05339105339105339, 0.05483405483405483, 0.05483405483405483, 0.05194805194805195, 0.05339105339105339, 0.05339105339105339, 0.6681096681096681, 0.8816738816738817, 0.862914862914863, 0.10533910533910534, 0.06926406926406926, 0.06782106782106782, 0.06349206349206349, 0.06060606060606061, 0.06204906204906205, 0.05916305916305916, 0.06060606060606061, 0.05916305916305916, 0.06060606060606061, 0.06060606060606061, 0.9307359307359307, 0.06060606060606061, 0.06637806637806638, 0.06349206349206349, 0.8412698412698413, 0.6118326118326118, 0.1111111111111111, 0.07647907647907648, 0.07792207792207792, 0.08225108225108226, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.08080808080808081, 0.08225108225108226, 0.10101010101010101, 0.113997113997114, 0.12265512265512266, 0.23232323232323232, 0.31313131313131315, 0.6897546897546898], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-grasp_5.gap.json b/pfam_gap_rates/ATP-grasp_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5d8235bea1bedb234efed9a96b8e16833254f43
--- /dev/null
+++ b/pfam_gap_rates/ATP-grasp_5.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-grasp_5", "n_seqs": 1328, "length": 228, "gap_rates": [0.9231927710843374, 0.6099397590361446, 0.5572289156626506, 0.5090361445783133, 0.45256024096385544, 0.3990963855421687, 0.3019578313253012, 0.2183734939759036, 0.16792168674698796, 0.13478915662650603, 0.11897590361445783, 0.0963855421686747, 0.08810240963855422, 0.0783132530120482, 0.0625, 0.05798192771084337, 0.05572289156626506, 0.05572289156626506, 0.054969879518072286, 0.054969879518072286, 0.05421686746987952, 0.054969879518072286, 0.05421686746987952, 0.05271084337349398, 0.05271084337349398, 0.053463855421686746, 0.05271084337349398, 0.05271084337349398, 0.05421686746987952, 0.058734939759036146, 0.05572289156626506, 0.05421686746987952, 0.05572289156626506, 0.060240963855421686, 0.058734939759036146, 0.06400602409638555, 0.0625, 0.07078313253012049, 0.06325301204819277, 0.061746987951807226, 0.060240963855421686, 0.07153614457831325, 0.07530120481927711, 0.06099397590361446, 0.05421686746987952, 0.05120481927710843, 0.050451807228915665, 0.04819277108433735, 0.04743975903614458, 0.04743975903614458, 0.045180722891566265, 0.045180722891566265, 0.04593373493975904, 0.046686746987951805, 0.08885542168674698, 0.08885542168674698, 0.07906626506024096, 0.08132530120481928, 0.05572289156626506, 0.05647590361445783, 0.0572289156626506, 0.04819277108433735, 0.04894578313253012, 0.04593373493975904, 0.04442771084337349, 0.04442771084337349, 0.04442771084337349, 0.043674698795180725, 0.04216867469879518, 0.05120481927710843, 0.04292168674698795, 0.043674698795180725, 0.07680722891566265, 0.061746987951807226, 0.04819277108433735, 0.04593373493975904, 0.046686746987951805, 0.045180722891566265, 0.04442771084337349, 0.043674698795180725, 0.04442771084337349, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.04593373493975904, 0.04743975903614458, 0.0572289156626506, 0.10316265060240964, 0.16189759036144577, 0.16716867469879518, 0.38478915662650603, 0.3516566265060241, 0.25903614457831325, 0.2545180722891566, 0.25150602409638556, 0.19352409638554216, 0.16265060240963855, 0.08960843373493976, 0.05798192771084337, 0.050451807228915665, 0.050451807228915665, 0.04894578313253012, 0.046686746987951805, 0.046686746987951805, 0.046686746987951805, 0.046686746987951805, 0.05120481927710843, 0.6242469879518072, 0.7808734939759037, 0.0911144578313253, 0.03765060240963856, 0.03463855421686747, 0.03237951807228916, 0.03162650602409638, 0.02786144578313253, 0.02710843373493976, 0.02635542168674699, 0.025602409638554216, 0.024849397590361446, 0.024096385542168676, 0.024849397590361446, 0.025602409638554216, 0.025602409638554216, 0.030120481927710843, 0.025602409638554216, 0.024849397590361446, 0.024096385542168676, 0.024096385542168676, 0.023343373493975902, 0.023343373493975902, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024849397590361446, 0.024096385542168676, 0.024096385542168676, 0.022590361445783132, 0.024849397590361446, 0.02635542168674699, 0.029367469879518073, 0.025602409638554216, 0.023343373493975902, 0.023343373493975902, 0.022590361445783132, 0.024849397590361446, 0.024096385542168676, 0.022590361445783132, 0.022590361445783132, 0.02033132530120482, 0.021837349397590362, 0.021837349397590362, 0.02108433734939759, 0.021837349397590362, 0.02108433734939759, 0.02108433734939759, 0.02108433734939759, 0.02108433734939759, 0.01882530120481928, 0.01882530120481928, 0.01957831325301205, 0.01957831325301205, 0.01957831325301205, 0.02108433734939759, 0.02033132530120482, 0.02635542168674699, 0.023343373493975902, 0.021837349397590362, 0.022590361445783132, 0.022590361445783132, 0.023343373493975902, 0.0338855421686747, 0.030120481927710843, 0.03162650602409638, 0.0338855421686747, 0.11144578313253012, 0.039909638554216864, 0.03237951807228916, 0.02710843373493976, 0.02635542168674699, 0.021837349397590362, 0.021837349397590362, 0.01957831325301205, 0.01957831325301205, 0.01957831325301205, 0.02033132530120482, 0.02033132530120482, 0.02033132530120482, 0.02033132530120482, 0.02033132530120482, 0.02108433734939759, 0.021837349397590362, 0.022590361445783132, 0.023343373493975902, 0.022590361445783132, 0.023343373493975902, 0.045180722891566265, 0.023343373493975902, 0.024096385542168676, 0.8975903614457831, 0.024096385542168676, 0.022590361445783132, 0.022590361445783132, 0.023343373493975902, 0.023343373493975902, 0.023343373493975902, 0.024096385542168676, 0.0286144578313253, 0.02786144578313253, 0.02786144578313253, 0.02786144578313253, 0.0286144578313253, 0.03237951807228916, 0.9126506024096386, 0.8975903614457831, 0.0338855421686747, 0.03463855421686747, 0.8862951807228916, 0.8381024096385542, 0.03614457831325301, 0.036897590361445784, 0.03765060240963856, 0.03765060240963856, 0.0391566265060241, 0.043674698795180725, 0.07906626506024096, 0.1091867469879518, 0.2341867469879518, 0.3644578313253012], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-gua_Ptrans.gap.json b/pfam_gap_rates/ATP-gua_Ptrans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..584e97da994577e11239a2bb9bf085d2bf2a6e4a
--- /dev/null
+++ b/pfam_gap_rates/ATP-gua_Ptrans.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-gua_Ptrans", "n_seqs": 813, "length": 260, "gap_rates": [0.7835178351783518, 0.3874538745387454, 0.23616236162361623, 0.18450184501845018, 0.15744157441574416, 0.14391143911439114, 0.13161131611316113, 0.11193111931119311, 0.1057810578105781, 0.10209102091020911, 0.1008610086100861, 0.0996309963099631, 0.0971709717097171, 0.0959409594095941, 0.09348093480934809, 0.0897908979089791, 0.0897908979089791, 0.0897908979089791, 0.0897908979089791, 0.08610086100861009, 0.08610086100861009, 0.08487084870848709, 0.08487084870848709, 0.08487084870848709, 0.08610086100861009, 0.08856088560885608, 0.0897908979089791, 0.08733087330873308, 0.08610086100861009, 0.08856088560885608, 0.0897908979089791, 0.08733087330873308, 0.08856088560885608, 0.08487084870848709, 0.08118081180811808, 0.08118081180811808, 0.08241082410824108, 0.07995079950799508, 0.07995079950799508, 0.07749077490774908, 0.07749077490774908, 0.07749077490774908, 0.07749077490774908, 0.07872078720787208, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_E.gap.json b/pfam_gap_rates/ATP-synt_E.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a4d1558f1aa4bb78445e76063ef25fa15ff8273
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_E.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_E", "n_seqs": 241, "length": 97, "gap_rates": [0.6348547717842323, 0.5684647302904564, 0.6265560165975104, 0.5892116182572614, 0.5145228215767634, 0.1825726141078838, 0.14107883817427386, 0.0912863070539419, 0.07053941908713693, 0.04149377593360996, 0.012448132780082987, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.0, 0.0, 0.004149377593360996, 0.004149377593360996, 0.34439834024896265, 0.34854771784232363, 0.3278008298755187, 0.024896265560165973, 0.016597510373443983, 0.02074688796680498, 0.02074688796680498, 0.016597510373443983, 0.02074688796680498, 0.024896265560165973, 0.03319502074688797, 0.07468879668049792, 0.06639004149377593, 0.05394190871369295, 0.07053941908713693, 0.08298755186721991, 0.14522821576763487, 0.17012448132780084, 0.17427385892116182, 0.18672199170124482, 0.16597510373443983, 0.17842323651452283, 0.18672199170124482, 0.18672199170124482, 0.1950207468879668, 0.1950207468879668, 0.22406639004149378, 0.2074688796680498, 0.21991701244813278, 0.2157676348547718, 0.22406639004149378, 0.22821576763485477, 0.24481327800829875, 0.26556016597510373, 0.6224066390041494, 0.6016597510373444, 0.5933609958506224, 0.5435684647302904, 0.5269709543568465, 0.46473029045643155, 0.3941908713692946, 0.37344398340248963, 0.37344398340248963, 0.48132780082987553, 0.47717842323651455, 0.46887966804979253, 0.4979253112033195, 0.5020746887966805, 0.5062240663900415, 0.5394190871369294, 0.5435684647302904, 0.5435684647302904, 0.7468879668049793, 0.7593360995850622, 0.7593360995850622, 0.7468879668049793, 0.5933609958506224, 0.6763485477178424, 0.7302904564315352, 0.7634854771784232, 0.8049792531120332, 0.8340248962655602, 0.8547717842323651, 0.8879668049792531, 0.91701244813278], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP11.gap.json b/pfam_gap_rates/ATP11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a0d65aca4489a78740a55f03495a39f73e9775e
--- /dev/null
+++ b/pfam_gap_rates/ATP11.gap.json
@@ -0,0 +1 @@
+{"family": "ATP11", "n_seqs": 277, "length": 353, "gap_rates": [0.6064981949458483, 0.5523465703971119, 0.5487364620938628, 0.5487364620938628, 0.5487364620938628, 0.5487364620938628, 0.5487364620938628, 0.5487364620938628, 0.5487364620938628, 0.5487364620938628, 0.5487364620938628, 0.5487364620938628, 0.5451263537906137, 0.5451263537906137, 0.5415162454873647, 0.5523465703971119, 0.5487364620938628, 0.5487364620938628, 0.6353790613718412, 0.5342960288808665, 0.5270758122743683, 0.5090252707581228, 0.5054151624548736, 0.48736462093862815, 0.4584837545126354, 0.4259927797833935, 0.40794223826714804, 0.40794223826714804, 0.41155234657039713, 0.40794223826714804, 0.40794223826714804, 0.40794223826714804, 0.40794223826714804, 0.4043321299638989, 0.4043321299638989, 0.4043321299638989, 0.4043321299638989, 0.4043321299638989, 0.40794223826714804, 0.6245487364620939, 0.5812274368231047, 0.5487364620938628, 0.516245487364621, 0.7292418772563177, 0.776173285198556, 0.8339350180505415, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP_Ca_trans_C.gap.json b/pfam_gap_rates/ATP_Ca_trans_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf3e1ab7c303333a189a798906b4ed303ff73856
--- /dev/null
+++ b/pfam_gap_rates/ATP_Ca_trans_C.gap.json
@@ -0,0 +1 @@
+{"family": "ATP_Ca_trans_C", "n_seqs": 191, "length": 54, "gap_rates": [0.20418848167539266, 0.20418848167539266, 0.17801047120418848, 0.14136125654450263, 0.14136125654450263, 0.13612565445026178, 0.13612565445026178, 0.14136125654450263, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.13089005235602094, 0.07329842931937172, 0.05235602094240838, 0.05759162303664921, 0.12041884816753927, 0.13089005235602094, 0.14136125654450263, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.16230366492146597, 0.8743455497382199, 0.7172774869109948, 0.3298429319371728, 0.2513089005235602, 0.2670157068062827, 0.27225130890052357, 0.7329842931937173, 0.743455497382199, 0.33507853403141363, 0.3403141361256545, 0.3403141361256545, 0.35602094240837695, 0.3769633507853403, 0.38219895287958117, 0.39267015706806285, 0.9476439790575916, 0.9476439790575916, 0.9214659685863874, 0.43455497382198954, 0.4869109947643979, 0.4973821989528796, 0.5026178010471204, 0.5026178010471204, 0.5549738219895288, 0.5549738219895288, 0.5916230366492147, 0.6282722513089005, 0.680628272251309], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATPgrasp_YheCD.gap.json b/pfam_gap_rates/ATPgrasp_YheCD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc6dcb7758a561dc1730e498f8e3b63f860ac024
--- /dev/null
+++ b/pfam_gap_rates/ATPgrasp_YheCD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Abhydro_lipase.gap.json b/pfam_gap_rates/Abhydro_lipase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f24098bdee7664ab094848d22fdb454eefde939
--- /dev/null
+++ b/pfam_gap_rates/Abhydro_lipase.gap.json
@@ -0,0 +1 @@
+{"family": "Abhydro_lipase", "n_seqs": 975, "length": 87, "gap_rates": [0.7753846153846153, 0.4564102564102564, 0.23692307692307693, 0.14461538461538462, 0.0882051282051282, 0.06974358974358974, 0.046153846153846156, 0.03282051282051282, 0.02358974358974359, 0.01641025641025641, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.014358974358974359, 0.009230769230769232, 0.0071794871794871795, 0.006153846153846154, 0.005128205128205128, 0.005128205128205128, 0.006153846153846154, 0.006153846153846154, 0.006153846153846154, 0.005128205128205128, 0.0071794871794871795, 0.0071794871794871795, 0.006153846153846154, 0.006153846153846154, 0.006153846153846154, 0.008205128205128205, 0.008205128205128205, 0.008205128205128205, 0.008205128205128205, 0.010256410256410256, 0.5466666666666666, 0.8164102564102564, 0.8769230769230769, 0.8892307692307693, 0.9148717948717948, 0.92, 0.9220512820512821, 0.9261538461538461, 0.9302564102564103, 0.9343589743589743, 0.9384615384615385, 0.9394871794871795, 0.9435897435897436, 0.9394871794871795, 0.9364102564102564, 0.9323076923076923, 0.9271794871794872, 0.9220512820512821, 0.9220512820512821, 0.9179487179487179, 0.9128205128205128, 0.877948717948718, 0.8451282051282051, 0.7743589743589744, 0.5917948717948718, 0.3405128205128205, 0.24717948717948718, 0.20923076923076922, 0.17435897435897435, 0.16, 0.13743589743589743, 0.052307692307692305, 0.02666666666666667, 0.02358974358974359, 0.024615384615384615, 0.024615384615384615, 0.024615384615384615, 0.024615384615384615, 0.024615384615384615, 0.02564102564102564, 0.027692307692307693, 0.03076923076923077, 0.03076923076923077, 0.03282051282051282, 0.035897435897435895, 0.03794871794871795, 0.043076923076923075, 0.048205128205128206, 0.05333333333333334, 0.059487179487179485, 0.08923076923076922, 0.26666666666666666, 0.8625641025641025], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Abhydrolase_2.gap.json b/pfam_gap_rates/Abhydrolase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..566d11ba890ee23a77dd475565ef0e275bddea2d
--- /dev/null
+++ b/pfam_gap_rates/Abhydrolase_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Abi.gap.json b/pfam_gap_rates/Abi.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8bea26100be2dc7adbd63fbc9e3df4b04ba9c53
--- /dev/null
+++ b/pfam_gap_rates/Abi.gap.json
@@ -0,0 +1 @@
+{"family": "Abi", "n_seqs": 5000, "length": 132, "gap_rates": [0.907, 0.6778, 0.4038, 0.2676, 0.1824, 0.1144, 0.078, 0.0526, 0.0308, 0.0248, 0.0216, 0.0198, 0.0164, 0.0154, 0.0156, 0.0132, 0.013, 0.0124, 0.0124, 0.0122, 0.0108, 0.0108, 0.0108, 0.0108, 0.0108, 0.0104, 0.015, 0.0168, 0.017, 0.0364, 0.04, 0.0418, 0.8542, 0.9492, 0.6502, 0.1678, 0.149, 0.2298, 0.8448, 0.8768, 0.9236, 0.9352, 0.8988, 0.8596, 0.765, 0.1354, 0.0318, 0.0164, 0.0112, 0.0098, 0.0092, 0.0042, 0.004, 0.004, 0.0038, 0.0038, 0.0038, 0.0038, 0.004, 0.0038, 0.0092, 0.0142, 0.021, 0.4918, 0.5924, 0.6694, 0.7272, 0.799, 0.872, 0.9106, 0.9336, 0.9494, 0.9422, 0.9206, 0.8908, 0.8494, 0.7594, 0.6952, 0.6444, 0.5402, 0.4484, 0.2184, 0.1818, 0.0982, 0.589, 0.011, 0.8892, 0.9072, 0.9248, 0.9352, 0.9436, 0.9496, 0.946, 0.9386, 0.9292, 0.9214, 0.8924, 0.8886, 0.0072, 0.007, 0.0068, 0.0066, 0.0066, 0.0068, 0.007, 0.0078, 0.0082, 0.008, 0.0084, 0.0084, 0.009, 0.0096, 0.0098, 0.0104, 0.0118, 0.932, 0.012, 0.0826, 0.0122, 0.0122, 0.0134, 0.0138, 0.0148, 0.0156, 0.0168, 0.0198, 0.021, 0.0268, 0.0508, 0.103, 0.149, 0.7914], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AbiEi_1.gap.json b/pfam_gap_rates/AbiEi_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..349d754a7c7f12b0bd20fff96beb60cb201dcfb9
--- /dev/null
+++ b/pfam_gap_rates/AbiEi_1.gap.json
@@ -0,0 +1 @@
+{"family": "AbiEi_1", "n_seqs": 113, "length": 165, "gap_rates": [0.7610619469026548, 0.7079646017699115, 0.6991150442477876, 0.6814159292035398, 0.672566371681416, 0.6460176991150443, 0.6283185840707964, 0.6814159292035398, 0.6814159292035398, 0.6902654867256637, 0.584070796460177, 0.46017699115044247, 0.415929203539823, 0.37168141592920356, 0.3008849557522124, 0.25663716814159293, 0.21238938053097345, 0.168141592920354, 0.1415929203539823, 0.12389380530973451, 0.07964601769911504, 0.9380530973451328, 0.9380530973451328, 0.9292035398230089, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.017699115044247787, 0.017699115044247787, 0.008849557522123894, 0.9026548672566371, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.02654867256637168, 0.0, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.20353982300884957, 0.9469026548672567, 0.6991150442477876, 0.061946902654867256, 0.02654867256637168, 0.017699115044247787, 0.0, 0.008849557522123894, 0.017699115044247787, 0.017699115044247787, 0.0, 0.0, 0.0, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.017699115044247787, 0.02654867256637168, 0.24778761061946902, 0.17699115044247787, 0.17699115044247787, 0.09734513274336283, 0.10619469026548672, 0.11504424778761062, 0.05309734513274336, 0.035398230088495575, 0.04424778761061947, 0.09734513274336283, 0.035398230088495575, 0.04424778761061947, 0.04424778761061947, 0.24778761061946902, 0.831858407079646, 0.9203539823008849, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.9203539823008849, 0.831858407079646, 0.7876106194690266, 0.09734513274336283, 0.061946902654867256, 0.035398230088495575, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.017699115044247787, 0.02654867256637168, 0.035398230088495575, 0.05309734513274336, 0.09734513274336283, 0.05309734513274336, 0.04424778761061947, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.11504424778761062, 0.12389380530973451, 0.13274336283185842, 0.18584070796460178, 0.1415929203539823, 0.13274336283185842, 0.8849557522123894, 0.8495575221238938, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.1504424778761062, 0.1504424778761062, 0.1592920353982301, 0.1592920353982301, 0.1592920353982301, 0.504424778761062, 0.17699115044247787, 0.18584070796460178, 0.19469026548672566, 0.21238938053097345, 0.21238938053097345, 0.21238938053097345, 0.23893805309734514, 0.2743362831858407, 0.3008849557522124, 0.3008849557522124, 0.3274336283185841, 0.40707964601769914, 0.8849557522123894], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AbiEii.gap.json b/pfam_gap_rates/AbiEii.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2594e698295f03278fba4419b2ace8c2750cada8
--- /dev/null
+++ b/pfam_gap_rates/AbiEii.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Acatn.gap.json b/pfam_gap_rates/Acatn.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff7012fa5eed092a1c3f6588f9608351fdecae3f
--- /dev/null
+++ b/pfam_gap_rates/Acatn.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AcetylCoA_hyd_C.gap.json b/pfam_gap_rates/AcetylCoA_hyd_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d65646288566a9298e3ea123de29ec22fef994b9
--- /dev/null
+++ b/pfam_gap_rates/AcetylCoA_hyd_C.gap.json
@@ -0,0 +1 @@
+{"family": "AcetylCoA_hyd_C", "n_seqs": 1332, "length": 166, "gap_rates": [0.27102102102102105, 0.26576576576576577, 0.2147147147147147, 0.15315315315315314, 0.12762762762762764, 0.11186186186186187, 0.1006006006006006, 0.08933933933933934, 0.08258258258258258, 0.07357357357357357, 0.06306306306306306, 0.7192192192192193, 0.033783783783783786, 0.03303303303303303, 0.03753753753753754, 0.033783783783783786, 0.03003003003003003, 0.027777777777777776, 0.02702702702702703, 0.02702702702702703, 0.026276276276276277, 0.025525525525525526, 0.025525525525525526, 0.025525525525525526, 0.025525525525525526, 0.02702702702702703, 0.026276276276276277, 0.026276276276276277, 0.026276276276276277, 0.026276276276276277, 0.025525525525525526, 0.025525525525525526, 0.36786786786786785, 0.025525525525525526, 0.024774774774774775, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.02177177177177177, 0.021021021021021023, 0.021021021021021023, 0.02027027027027027, 0.021021021021021023, 0.02177177177177177, 0.02177177177177177, 0.02252252252252252, 0.02177177177177177, 0.02252252252252252, 0.02177177177177177, 0.02252252252252252, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.6073573573573574, 0.02252252252252252, 0.023273273273273273, 0.024774774774774775, 0.024024024024024024, 0.024774774774774775, 0.024774774774774775, 0.024024024024024024, 0.02252252252252252, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.023273273273273273, 0.024024024024024024, 0.024774774774774775, 0.024774774774774775, 0.024774774774774775, 0.3716216216216216, 0.36936936936936937, 0.36936936936936937, 0.9204204204204204, 0.918918918918919, 0.37012012012012013, 0.3708708708708709, 0.025525525525525526, 0.025525525525525526, 0.024774774774774775, 0.024774774774774775, 0.024024024024024024, 0.024024024024024024, 0.024774774774774775, 0.024774774774774775, 0.025525525525525526, 0.042042042042042045, 0.03303303303303303, 0.026276276276276277, 0.9226726726726727, 0.8948948948948949, 0.07057057057057058, 0.8978978978978979, 0.9151651651651652, 0.9024024024024024, 0.8866366366366366, 0.16741741741741742, 0.8948948948948949, 0.03078078078078078, 0.027777777777777776, 0.02702702702702703, 0.027777777777777776, 0.02702702702702703, 0.02702702702702703, 0.026276276276276277, 0.025525525525525526, 0.5037537537537538, 0.47072072072072074, 0.4219219219219219, 0.024024024024024024, 0.023273273273273273, 0.025525525525525526, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.023273273273273273, 0.03753753753753754, 0.03678678678678678, 0.024024024024024024, 0.02252252252252252, 0.021021021021021023, 0.021021021021021023, 0.021021021021021023, 0.021021021021021023, 0.021021021021021023, 0.02177177177177177, 0.02027027027027027, 0.01951951951951952, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02177177177177177, 0.02252252252252252, 0.02252252252252252, 0.024024024024024024, 0.024024024024024024, 0.024774774774774775, 0.024774774774774775, 0.024774774774774775, 0.026276276276276277, 0.026276276276276277, 0.6554054054054054, 0.02702702702702703, 0.02702702702702703, 0.027777777777777776, 0.028528528528528527, 0.02927927927927928, 0.028528528528528527, 0.02927927927927928, 0.03228228228228228, 0.036036036036036036, 0.038288288288288286, 0.03903903903903904, 0.05780780780780781, 0.12687687687687688, 0.5548048048048048], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AcetylCoA_hydro.gap.json b/pfam_gap_rates/AcetylCoA_hydro.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b4ee6008f62fafae1e6b6ea6a87001db938c514
--- /dev/null
+++ b/pfam_gap_rates/AcetylCoA_hydro.gap.json
@@ -0,0 +1 @@
+{"family": "AcetylCoA_hydro", "n_seqs": 1185, "length": 228, "gap_rates": [0.9426160337552743, 0.8244725738396624, 0.6953586497890295, 0.6126582278481013, 0.5240506329113924, 0.4911392405063291, 0.4481012658227848, 0.39409282700421944, 0.3594936708860759, 0.3130801687763713, 0.2683544303797468, 0.25991561181434597, 0.24641350210970464, 0.2168776371308017, 0.2109704641350211, 0.20928270042194091, 0.20506329113924052, 0.1991561181434599, 0.2, 0.18649789029535865, 0.17552742616033756, 0.16624472573839663, 0.14767932489451477, 0.13755274261603376, 0.1291139240506329, 0.13839662447257384, 0.13670886075949368, 0.13248945147679325, 0.1341772151898734, 0.46582278481012657, 0.4548523206751055, 0.13333333333333333, 0.12827004219409283, 0.1257383966244726, 0.1257383966244726, 0.11054852320675106, 0.10970464135021098, 0.10464135021097046, 0.1029535864978903, 0.10042194092827005, 0.10126582278481013, 0.1021097046413502, 0.10042194092827005, 0.10042194092827005, 0.33248945147679326, 0.1881856540084388, 0.2008438818565401, 0.2109704641350211, 0.21434599156118145, 0.22025316455696203, 0.2219409282700422, 0.21181434599156118, 0.2042194092827004, 0.18565400843881857, 0.19831223628691982, 0.20337552742616033, 0.19156118143459916, 0.1729957805907173, 0.16540084388185655, 0.14767932489451477, 0.13755274261603376, 0.13755274261603376, 0.1308016877637131, 0.1308016877637131, 0.1291139240506329, 0.4278481012658228, 0.41940928270042194, 0.19156118143459916, 0.16540084388185655, 0.1409282700421941, 0.6059071729957806, 0.22953586497890296, 0.9383966244725739, 0.1620253164556962, 0.1468354430379747, 0.1350210970464135, 0.1409282700421941, 0.12658227848101267, 0.1308016877637131, 0.1308016877637131, 0.13164556962025317, 0.1350210970464135, 0.12658227848101267, 0.1189873417721519, 0.09873417721518987, 0.08776371308016878, 0.5679324894514768, 0.17552742616033756, 0.07932489451476793, 0.06835443037974684, 0.06160337552742616, 0.05063291139240506, 0.04810126582278481, 0.056540084388185655, 0.04388185654008439, 0.04050632911392405, 0.03713080168776371, 0.036286919831223625, 0.03713080168776371, 0.036286919831223625, 0.032067510548523206, 0.029535864978902954, 0.026160337552742614, 0.024472573839662448, 0.021940928270042195, 0.021940928270042195, 0.02109704641350211, 0.02109704641350211, 0.021940928270042195, 0.020253164556962026, 0.02109704641350211, 0.02109704641350211, 0.021940928270042195, 0.026160337552742614, 0.021940928270042195, 0.02109704641350211, 0.08523206751054853, 0.038818565400843885, 0.031223628691983123, 0.035443037974683546, 0.03291139240506329, 0.030379746835443037, 0.043037974683544304, 0.03375527426160337, 0.07172995780590717, 0.880168776371308, 0.8928270042194093, 0.8987341772151899, 0.9122362869198313, 0.8962025316455696, 0.890295358649789, 0.6219409282700422, 0.038818565400843885, 0.018565400843881856, 0.01350210970464135, 0.012658227848101266, 0.010970464135021098, 0.010126582278481013, 0.009282700421940928, 0.009282700421940928, 0.00590717299578059, 0.00590717299578059, 0.005063291139240506, 0.009282700421940928, 0.007594936708860759, 0.00590717299578059, 0.00590717299578059, 0.9417721518987342, 0.005063291139240506, 0.005063291139240506, 0.005063291139240506, 0.00590717299578059, 0.010126582278481013, 0.7426160337552743, 0.7189873417721518, 0.006751054852320675, 0.00590717299578059, 0.6244725738396625, 0.6286919831223629, 0.6548523206751055, 0.9476793248945148, 0.6447257383966245, 0.6253164556962025, 0.6210970464135022, 0.006751054852320675, 0.007594936708860759, 0.008438818565400843, 0.010126582278481013, 0.008438818565400843, 0.010126582278481013, 0.010970464135021098, 0.009282700421940928, 0.016033755274261603, 0.016033755274261603, 0.610126582278481, 0.6109704641350211, 0.6210970464135022, 0.7324894514767932, 0.6236286919831223, 0.620253164556962, 0.6109704641350211, 0.6075949367088608, 0.016033755274261603, 0.017721518987341773, 0.017721518987341773, 0.017721518987341773, 0.016033755274261603, 0.015189873417721518, 0.015189873417721518, 0.016033755274261603, 0.016033755274261603, 0.016033755274261603, 0.016877637130801686, 0.9426160337552743, 0.017721518987341773, 0.020253164556962026, 0.02278481012658228, 0.029535864978902954, 0.026160337552742614, 0.0270042194092827, 0.8970464135021097, 0.4835443037974684, 0.04388185654008439, 0.032067510548523206, 0.03459915611814346, 0.03459915611814346, 0.036286919831223625, 0.0379746835443038, 0.038818565400843885, 0.04050632911392405, 0.043037974683544304, 0.6329113924050633, 0.5991561181434599, 0.05485232067510549, 0.06160337552742616, 0.07172995780590717, 0.07763713080168777, 0.10464135021097046, 0.16371308016877636, 0.21181434599156118, 0.3848101265822785, 0.44978902953586497, 0.47932489451476795, 0.5139240506329114, 0.5586497890295359, 0.6016877637130802, 0.6371308016877637, 0.7729957805907173], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_5.gap.json b/pfam_gap_rates/Acetyltransf_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b3197a51a3569b2ab069bab089467de43eab530
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_5.gap.json
@@ -0,0 +1 @@
+{"family": "Acetyltransf_5", "n_seqs": 807, "length": 124, "gap_rates": [0.08921933085501858, 0.0644361833952912, 0.061957868649318466, 0.06071871127633209, 0.05947955390334572, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.05452292441140025, 0.05452292441140025, 0.05328376703841388, 0.05328376703841388, 0.05080545229244114, 0.05452292441140025, 0.05328376703841388, 0.05328376703841388, 0.8327137546468402, 0.7496902106567535, 0.5080545229244114, 0.4250309789343247, 0.38909541511771994, 0.3630731102850062, 0.8364312267657993, 0.021065675340768277, 0.008674101610904586, 0.007434944237918215, 0.0037174721189591076, 0.0024783147459727386, 0.0024783147459727386, 0.0024783147459727386, 0.8884758364312267, 0.8983890954151177, 0.8884758364312267, 0.0024783147459727386, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0037174721189591076, 0.0024783147459727386, 0.004956629491945477, 0.004956629491945477, 0.0012391573729863693, 0.7893432465923172, 0.8351920693928129, 0.9144981412639405, 0.872366790582404, 0.8190830235439901, 0.14869888475836432, 0.05080545229244114, 0.909541511771995, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0024783147459727386, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0037174721189591076, 0.006195786864931847, 0.004956629491945477, 0.6022304832713755, 0.8636926889714994, 0.9442379182156134, 0.6257744733581165, 0.5712515489467163, 0.07063197026022305, 0.06691449814126393, 0.06319702602230483, 0.03345724907063197, 0.008674101610904586, 0.006195786864931847, 0.006195786864931847, 0.012391573729863693, 0.011152416356877323, 0.009913258983890954, 0.007434944237918215, 0.04584882280049566, 0.6716232961586122, 0.07806691449814127, 0.0322180916976456, 0.021065675340768277, 0.013630731102850062, 0.008674101610904586, 0.009913258983890954, 0.929368029739777, 0.7930607187112764, 0.01734820322180917, 0.024783147459727387, 0.011152416356877323, 0.9206939281288724, 0.8636926889714994, 0.006195786864931847, 0.006195786864931847, 0.006195786864931847, 0.006195786864931847, 0.007434944237918215, 0.007434944237918215, 0.007434944237918215, 0.007434944237918215, 0.008674101610904586, 0.012391573729863693, 0.012391573729863693, 0.013630731102850062, 0.022304832713754646, 0.023543990086741014, 0.023543990086741014, 0.02973977695167286, 0.040892193308550186, 0.061957868649318466, 0.09913258983890955, 0.17472118959107807, 0.21437422552664187, 0.23915737298636927, 0.2503097893432466, 0.30359355638166047, 0.5774473358116481], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_6.gap.json b/pfam_gap_rates/Acetyltransf_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3ba742f10acdb1557bc3942358fe7e95fa9bb9f
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_6.gap.json
@@ -0,0 +1 @@
+{"family": "Acetyltransf_6", "n_seqs": 1310, "length": 166, "gap_rates": [0.8435114503816794, 0.6160305343511451, 0.5343511450381679, 0.4534351145038168, 0.3648854961832061, 0.30763358778625954, 0.27099236641221375, 0.21068702290076335, 0.18091603053435115, 0.1648854961832061, 0.15725190839694655, 0.15114503816793892, 0.1465648854961832, 0.14274809160305343, 0.14198473282442747, 0.14045801526717558, 0.9374045801526718, 0.1633587786259542, 0.25190839694656486, 0.916030534351145, 0.37404580152671757, 0.2511450381679389, 0.216793893129771, 0.18931297709923664, 0.19312977099236642, 0.16106870229007633, 0.18473282442748093, 0.9312977099236641, 0.14122137404580154, 0.9381679389312977, 0.10534351145038168, 0.08778625954198473, 0.07938931297709924, 0.0717557251908397, 0.9404580152671755, 0.06717557251908397, 0.06412213740458016, 0.06564885496183206, 0.05725190839694656, 0.05419847328244275, 0.05419847328244275, 0.05343511450381679, 0.05419847328244275, 0.9206106870229007, 0.934351145038168, 0.9229007633587786, 0.9145038167938931, 0.07633587786259542, 0.083206106870229, 0.09312977099236641, 0.13893129770992366, 0.1, 0.06564885496183206, 0.06030534351145038, 0.6740458015267176, 0.8847328244274809, 0.9091603053435114, 0.8977099236641222, 0.8557251908396947, 0.6099236641221374, 0.5450381679389313, 0.11984732824427481, 0.07938931297709924, 0.06870229007633588, 0.2633587786259542, 0.2083969465648855, 0.0648854961832061, 0.046564885496183206, 0.044274809160305344, 0.04198473282442748, 0.03282442748091603, 0.02748091603053435, 0.02366412213740458, 0.022900763358778626, 0.02900763358778626, 0.026717557251908396, 0.048091603053435114, 0.03206106870229008, 0.02900763358778626, 0.05877862595419847, 0.42824427480916033, 0.39541984732824426, 0.07862595419847328, 0.04122137404580153, 0.02366412213740458, 0.013740458015267175, 0.00916030534351145, 0.004580152671755725, 0.004580152671755725, 0.0030534351145038168, 0.0022900763358778627, 0.0030534351145038168, 0.0022900763358778627, 0.8946564885496183, 0.0022900763358778627, 0.0015267175572519084, 0.0030534351145038168, 0.0015267175572519084, 0.0015267175572519084, 0.0015267175572519084, 0.0015267175572519084, 0.0015267175572519084, 0.0015267175572519084, 0.0015267175572519084, 0.0015267175572519084, 0.0022900763358778627, 0.0007633587786259542, 0.0015267175572519084, 0.0015267175572519084, 0.0007633587786259542, 0.0007633587786259542, 0.0022900763358778627, 0.0007633587786259542, 0.0007633587786259542, 0.0015267175572519084, 0.0022900763358778627, 0.0022900763358778627, 0.003816793893129771, 0.9381679389312977, 0.004580152671755725, 0.0061068702290076335, 0.0061068702290076335, 0.007633587786259542, 0.9320610687022901, 0.008396946564885497, 0.006870229007633588, 0.022900763358778626, 0.0183206106870229, 0.015267175572519083, 0.008396946564885497, 0.004580152671755725, 0.004580152671755725, 0.003816793893129771, 0.0061068702290076335, 0.006870229007633588, 0.006870229007633588, 0.00916030534351145, 0.011450381679389313, 0.012977099236641221, 0.0183206106870229, 0.022900763358778626, 0.02748091603053435, 0.046564885496183206, 0.046564885496183206, 0.05343511450381679, 0.9236641221374046, 0.0549618320610687, 0.09083969465648854, 0.0648854961832061, 0.07022900763358779, 0.07938931297709924, 0.09083969465648854, 0.12366412213740458, 0.14580152671755725, 0.9229007633587786, 0.9282442748091603, 0.9305343511450381, 0.9244274809160306, 0.9229007633587786, 0.20916030534351146, 0.28473282442748094, 0.37786259541984735, 0.4870229007633588, 0.5244274809160305, 0.5381679389312977, 0.7549618320610687], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Aconitase_2_N.gap.json b/pfam_gap_rates/Aconitase_2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c730ae0330f5db8cac6959f4a707378343a491ec
--- /dev/null
+++ b/pfam_gap_rates/Aconitase_2_N.gap.json
@@ -0,0 +1 @@
+{"family": "Aconitase_2_N", "n_seqs": 402, "length": 248, "gap_rates": [0.31592039800995025, 0.06965174129353234, 0.04477611940298507, 0.024875621890547265, 0.022388059701492536, 0.022388059701492536, 0.927860696517413, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Acyl-CoA_dh_C.gap.json b/pfam_gap_rates/Acyl-CoA_dh_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4a952b648b1778c059ef1a75430c02bf51ec6225
--- /dev/null
+++ b/pfam_gap_rates/Acyl-CoA_dh_C.gap.json
@@ -0,0 +1 @@
+{"family": "Acyl-CoA_dh_C", "n_seqs": 1078, "length": 143, "gap_rates": [0.6623376623376623, 0.42115027829313545, 0.28014842300556586, 0.21057513914656772, 0.16419294990723562, 0.15584415584415584, 0.1456400742115028, 0.137291280148423, 0.1261595547309833, 0.10946196660482375, 0.6493506493506493, 0.7662337662337663, 0.9304267161410018, 0.9192949907235621, 0.7263450834879406, 0.634508348794063, 0.10760667903525047, 0.09090909090909091, 0.461038961038961, 0.6029684601113172, 0.9406307977736549, 0.5473098330241187, 0.4424860853432282, 0.06029684601113173, 0.05102040816326531, 0.041743970315398886, 0.036178107606679034, 0.032467532467532464, 0.029684601113172542, 0.026901669758812616, 0.023191094619666047, 0.02040816326530612, 0.01948051948051948, 0.014842300556586271, 0.014842300556586271, 0.011131725417439703, 0.011131725417439703, 0.011131725417439703, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.008348794063079777, 0.008348794063079777, 0.008348794063079777, 0.008348794063079777, 0.008348794063079777, 0.008348794063079777, 0.13079777365491652, 0.12894248608534323, 0.13636363636363635, 0.05102040816326531, 0.6103896103896104, 0.9230055658627088, 0.9192949907235621, 0.04359925788497217, 0.03153988868274583, 0.9267161410018553, 0.9285714285714286, 0.9257884972170687, 0.021335807050092765, 0.01020408163265306, 0.008348794063079777, 0.006493506493506494, 0.0055658627087198514, 0.0055658627087198514, 0.0055658627087198514, 0.0055658627087198514, 0.0055658627087198514, 0.0055658627087198514, 0.00463821892393321, 0.00463821892393321, 0.00463821892393321, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0018552875695732839, 0.0018552875695732839, 0.0018552875695732839, 0.0018552875695732839, 0.0018552875695732839, 0.0018552875695732839, 0.0027829313543599257, 0.0027829313543599257, 0.0027829313543599257, 0.0037105751391465678, 0.0037105751391465678, 0.012059369202226345, 0.02040816326530612, 0.03525046382189239, 0.03432282003710575, 0.04916512059369202, 0.7987012987012987, 0.9202226345083488, 0.7096474953617811, 0.07142857142857142, 0.3320964749536178, 0.3033395176252319, 0.3079777365491651, 0.24304267161410018, 0.20037105751391465, 0.1901669758812616, 0.08348794063079777, 0.07606679035250463, 0.05194805194805195, 0.038033395176252316, 0.01948051948051948, 0.015769944341372914, 0.006493506493506494, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.0055658627087198514, 0.0055658627087198514, 0.0055658627087198514, 0.0055658627087198514, 0.0055658627087198514, 0.006493506493506494, 0.006493506493506494, 0.0074211502782931356, 0.0074211502782931356, 0.0074211502782931356, 0.0074211502782931356, 0.0074211502782931356, 0.008348794063079777, 0.014842300556586271, 0.01948051948051948, 0.030612244897959183, 0.04916512059369202, 0.0640074211502783, 0.07142857142857142, 0.11038961038961038, 0.15120593692022263, 0.22263450834879406, 0.6326530612244898], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AdoMet_MTase.gap.json b/pfam_gap_rates/AdoMet_MTase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d52faad551dae85a3c9a0631880e2be21ace9fc
--- /dev/null
+++ b/pfam_gap_rates/AdoMet_MTase.gap.json
@@ -0,0 +1 @@
+{"family": "AdoMet_MTase", "n_seqs": 220, "length": 130, "gap_rates": [0.6818181818181818, 0.37727272727272726, 0.3090909090909091, 0.25, 0.18181818181818182, 0.1590909090909091, 0.11818181818181818, 0.09545454545454546, 0.09545454545454546, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.08636363636363636, 0.2545454545454545, 0.12272727272727273, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.08636363636363636, 0.08181818181818182, 0.07727272727272727, 0.07727272727272727, 0.07727272727272727, 0.07727272727272727, 0.07727272727272727, 0.07727272727272727, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05454545454545454, 0.05454545454545454, 0.05909090909090909, 0.06363636363636363, 0.06363636363636363, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.06818181818181818, 0.08636363636363636, 0.09545454545454546, 0.5272727272727272, 0.759090909090909, 0.7954545454545454, 0.8181818181818182, 0.8363636363636363, 0.8409090909090909, 0.85, 0.8727272727272727, 0.9181818181818182, 0.8818181818181818, 0.8545454545454545, 0.8454545454545455, 0.8363636363636363, 0.8272727272727273, 0.8136363636363636, 0.7772727272727272, 0.5545454545454546, 0.4909090909090909, 0.2409090909090909, 0.21818181818181817, 0.12272727272727273, 0.08636363636363636, 0.06363636363636363, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05454545454545454, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.05909090909090909, 0.07272727272727272, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08636363636363636, 0.08636363636363636, 0.08636363636363636, 0.08636363636363636, 0.09090909090909091, 0.11363636363636363, 0.15, 0.22272727272727272, 0.24545454545454545, 0.2818181818181818, 0.32272727272727275, 0.35454545454545455, 0.35909090909090907, 0.38636363636363635, 0.40454545454545454, 0.42272727272727273, 0.43636363636363634, 0.45454545454545453, 0.4954545454545455, 0.5636363636363636], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AdoMet_dc.gap.json b/pfam_gap_rates/AdoMet_dc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed79e82b18ff59022b74760c80ffaff4f989cdb5
--- /dev/null
+++ b/pfam_gap_rates/AdoMet_dc.gap.json
@@ -0,0 +1 @@
+{"family": "AdoMet_dc", "n_seqs": 911, "length": 151, "gap_rates": [0.43249176728869376, 0.38309549945115257, 0.3468715697036224, 0.30954994511525796, 0.27991218441273324, 0.2513721185510428, 0.2239297475301866, 0.22063666300768386, 0.1778265642151482, 0.11964873765093303, 0.12184412733260154, 0.09659714599341383, 0.06476399560922064, 0.050493962678375415, 0.04610318331503842, 0.02854006586169045, 0.027442371020856202, 0.025246981339187707, 0.02305159165751921, 0.020856201975850714, 0.019758507135016465, 0.019758507135016465, 0.018660812294182216, 0.014270032930845226, 0.013172338090010977, 0.013172338090010977, 0.013172338090010977, 0.013172338090010977, 0.013172338090010977, 0.013172338090010977, 0.013172338090010977, 0.012074643249176729, 0.012074643249176729, 0.013172338090010977, 0.8924259055982436, 0.012074643249176729, 0.010976948408342482, 0.010976948408342482, 0.010976948408342482, 0.010976948408342482, 0.009879253567508232, 0.008781558726673985, 0.008781558726673985, 0.007683863885839737, 0.854006586169045, 0.8880351262349067, 0.9231613611416026, 0.867178924259056, 0.8254665203073546, 0.008781558726673985, 0.019758507135016465, 0.007683863885839737, 0.9286498353457738, 0.0043907793633369925, 0.0043907793633369925, 0.003293084522502744, 0.003293084522502744, 0.003293084522502744, 0.0010976948408342481, 0.0010976948408342481, 0.0, 0.0, 0.0, 0.7508232711306256, 0.7508232711306256, 0.7508232711306256, 0.7508232711306256, 0.7508232711306256, 0.7508232711306256, 0.7530186608122942, 0.7596048298572997, 0.7815587266739846, 0.7859495060373216, 0.7903402854006586, 0.7991218441273326, 0.8090010976948409, 0.8715697036223929, 0.9341383095499451, 0.8210757409440176, 0.8068057080131723, 0.7958287596048299, 0.7870472008781558, 0.7848518111964874, 0.7738748627881449, 0.7585071350164654, 0.7508232711306256, 0.7508232711306256, 0.7508232711306256, 0.7508232711306256, 0.7508232711306256, 0.7508232711306256, 0.7508232711306256, 0.0, 0.0, 0.0, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.0010976948408342481, 0.0021953896816684962, 0.003293084522502744, 0.003293084522502744, 0.003293084522502744, 0.003293084522502744, 0.003293084522502744, 0.747530186608123, 0.7486278814489572, 0.7486278814489572, 0.7486278814489572, 0.7486278814489572, 0.7486278814489572, 0.7486278814489572, 0.7387486278814489, 0.003293084522502744, 0.003293084522502744, 0.003293084522502744, 0.0043907793633369925, 0.0043907793633369925, 0.0043907793633369925, 0.0043907793633369925, 0.005488474204171241, 0.005488474204171241, 0.009879253567508232, 0.5718990120746432, 0.015367727771679473, 0.012074643249176729, 0.013172338090010977, 0.01646542261251372, 0.01756311745334797, 0.018660812294182216, 0.018660812294182216, 0.018660812294182216, 0.019758507135016465, 0.020856201975850714, 0.025246981339187707, 0.026344676180021953, 0.027442371020856202, 0.02854006586169045, 0.03293084522502744, 0.036223929747530186, 0.036223929747530186, 0.038419319429198684, 0.03951701427003293, 0.042810098792535674, 0.052689352360043906, 0.059275521405049394, 0.07025246981339188, 0.08342480790340286, 0.09440175631174534, 0.10098792535675083, 0.22722283205268934], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AgrB.gap.json b/pfam_gap_rates/AgrB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1975b283fb76da550ed6b3996e4bdbc70f6e2c0
--- /dev/null
+++ b/pfam_gap_rates/AgrB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AlaDh_PNT_C.gap.json b/pfam_gap_rates/AlaDh_PNT_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fd8337763a7f9a8dece706f098118500b52a476
--- /dev/null
+++ b/pfam_gap_rates/AlaDh_PNT_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Alk_phosphatase.gap.json b/pfam_gap_rates/Alk_phosphatase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62eb257d9e13721de8c6251d876f8568ec9af55f
--- /dev/null
+++ b/pfam_gap_rates/Alk_phosphatase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AmoA.gap.json b/pfam_gap_rates/AmoA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32161fe2e5d76bf243706e1b85336e6292c43bf6
--- /dev/null
+++ b/pfam_gap_rates/AmoA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AnmK.gap.json b/pfam_gap_rates/AnmK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbca3fec4ab0d17fdd642eb1baa457c088d941c3
--- /dev/null
+++ b/pfam_gap_rates/AnmK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Anoct_dimer.gap.json b/pfam_gap_rates/Anoct_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec522cf27fa054f447ac863a0432d57ba527ae01
--- /dev/null
+++ b/pfam_gap_rates/Anoct_dimer.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Antibiotic_NAT.gap.json b/pfam_gap_rates/Antibiotic_NAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5da025c8b14c847af6048bb37c9952b68407477
--- /dev/null
+++ b/pfam_gap_rates/Antibiotic_NAT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Arb2.gap.json b/pfam_gap_rates/Arb2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7fa65b682da862e82a3d31df0aae337246b156c
--- /dev/null
+++ b/pfam_gap_rates/Arb2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ArgoL1.gap.json b/pfam_gap_rates/ArgoL1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab0f955131dd66e659f77b708e8dd33c60bdf9c8
--- /dev/null
+++ b/pfam_gap_rates/ArgoL1.gap.json
@@ -0,0 +1 @@
+{"family": "ArgoL1", "n_seqs": 1072, "length": 56, "gap_rates": [0.6222014925373134, 0.33115671641791045, 0.22667910447761194, 0.1259328358208955, 0.11100746268656717, 0.08488805970149253, 0.07929104477611941, 0.07555970149253731, 0.07369402985074627, 0.0708955223880597, 0.376865671641791, 0.9253731343283582, 0.9421641791044776, 0.8805970149253731, 0.25093283582089554, 0.06902985074626866, 0.055970149253731345, 0.04291044776119403, 0.028917910447761194, 0.01958955223880597, 0.8694029850746269, 0.014925373134328358, 0.03917910447761194, 0.013059701492537313, 0.011194029850746268, 0.008395522388059701, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.002798507462686567, 0.0018656716417910447, 0.0009328358208955224, 0.0009328358208955224, 0.0009328358208955224, 0.0, 0.0, 0.0, 0.007462686567164179, 0.9188432835820896, 0.002798507462686567, 0.0037313432835820895, 0.0, 0.020522388059701493, 0.0, 0.0009328358208955224, 0.0009328358208955224, 0.0009328358208955224, 0.007462686567164179, 0.017723880597014924, 0.018656716417910446, 0.022388059701492536, 0.024253731343283583, 0.030783582089552237, 0.06996268656716417, 0.14365671641791045, 0.4533582089552239], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arrestin_C.gap.json b/pfam_gap_rates/Arrestin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e01bfca5c4d85591ed32866adb9a2e232c0c40e
--- /dev/null
+++ b/pfam_gap_rates/Arrestin_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ArsD.gap.json b/pfam_gap_rates/ArsD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9478f7300752f74e55099e4739c17dae807d83b
--- /dev/null
+++ b/pfam_gap_rates/ArsD.gap.json
@@ -0,0 +1 @@
+{"family": "ArsD", "n_seqs": 184, "length": 139, "gap_rates": [0.33152173913043476, 0.30434782608695654, 0.18478260869565216, 0.15217391304347827, 0.15217391304347827, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.13043478260869565, 0.1358695652173913, 0.125, 0.13043478260869565, 0.125, 0.125, 0.13043478260869565, 0.125, 0.11413043478260869, 0.10869565217391304, 0.10326086956521739, 0.10326086956521739, 0.09239130434782608, 0.09239130434782608, 0.08695652173913043, 0.08695652173913043, 0.08152173913043478, 0.08152173913043478, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.07065217391304347, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.059782608695652176, 0.059782608695652176, 0.9347826086956522, 0.05434782608695652, 0.05434782608695652, 0.9239130434782609, 0.8804347826086957, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.03804347826086957, 0.03804347826086957, 0.03260869565217391, 0.03260869565217391, 0.03804347826086957, 0.03260869565217391, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.021739130434782608, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.03260869565217391, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.02717391304347826, 0.016304347826086956, 0.059782608695652176, 0.016304347826086956, 0.016304347826086956, 0.010869565217391304, 0.016304347826086956, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.016304347826086956, 0.016304347826086956, 0.02717391304347826, 0.043478260869565216, 0.04891304347826087, 0.06521739130434782, 0.09782608695652174, 0.1358695652173913, 0.14130434782608695, 0.14673913043478262, 0.1793478260869565, 0.22826086956521738, 0.2554347826086957, 0.2554347826086957, 0.2608695652173913, 0.34782608695652173, 0.42391304347826086, 0.4673913043478261, 0.5380434782608695, 0.47282608695652173, 0.75, 0.8260869565217391, 0.8586956521739131, 0.8913043478260869, 0.9239130434782609, 0.9456521739130435, 0.9293478260869565, 0.9130434782608695, 0.8913043478260869, 0.8369565217391305, 0.7989130434782609, 0.717391304347826, 0.4076086956521739, 0.4076086956521739, 0.41304347826086957, 0.907608695652174, 0.41304347826086957, 0.41847826086956524, 0.44565217391304346, 0.7608695652173914, 0.5706521739130435, 0.4891304347826087, 0.4782608695652174, 0.5054347826086957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Asp-Al_Ex.gap.json b/pfam_gap_rates/Asp-Al_Ex.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9099b71f658678b9d513f90158aab56335199931
--- /dev/null
+++ b/pfam_gap_rates/Asp-Al_Ex.gap.json
@@ -0,0 +1 @@
+{"family": "Asp-Al_Ex", "n_seqs": 977, "length": 186, "gap_rates": [0.8413510747185261, 0.12487205731832139, 0.06345957011258956, 0.04094165813715456, 0.02661207778915046, 0.02456499488229273, 0.02456499488229273, 0.02354145342886387, 0.02354145342886387, 0.02354145342886387, 0.022517911975435005, 0.022517911975435005, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.5066530194472876, 0.518935516888434, 0.6560900716479018, 0.8065506653019447, 0.518935516888434, 0.5138178096212896, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.38996929375639716, 0.02047082906857728, 0.02047082906857728, 0.019447287615148412, 0.019447287615148412, 0.017400204708290685, 0.016376663254861822, 0.016376663254861822, 0.016376663254861822, 0.016376663254861822, 0.016376663254861822, 0.016376663254861822, 0.016376663254861822, 0.19959058341862845, 0.33162743091095187, 0.3295803480040942, 0.4196519959058342, 0.3971340839303992, 0.32446264073694986, 0.29887410440122825, 0.4564994882292733, 0.9477993858751279, 0.42988741044012285, 0.18935516888433981, 0.017400204708290685, 0.016376663254861822, 0.016376663254861822, 0.016376663254861822, 0.014329580348004094, 0.014329580348004094, 0.01330603889457523, 0.01330603889457523, 0.01330603889457523, 0.01330603889457523, 0.01330603889457523, 0.01330603889457523, 0.014329580348004094, 0.014329580348004094, 0.014329580348004094, 0.015353121801432957, 0.014329580348004094, 0.014329580348004094, 0.014329580348004094, 0.014329580348004094, 0.015353121801432957, 0.015353121801432957, 0.015353121801432957, 0.015353121801432957, 0.014329580348004094, 0.014329580348004094, 0.014329580348004094, 0.014329580348004094, 0.014329580348004094, 0.015353121801432957, 0.015353121801432957, 0.015353121801432957, 0.015353121801432957, 0.021494370522006142, 0.03172978505629478, 0.7379733879222109, 0.05322415557830092, 0.02968270214943705, 0.022517911975435005, 0.02354145342886387, 0.01842374616171955, 0.01330603889457523, 0.016376663254861822, 0.014329580348004094, 0.014329580348004094, 0.014329580348004094, 0.016376663254861822, 0.014329580348004094, 0.014329580348004094, 0.01330603889457523, 0.015353121801432957, 0.016376663254861822, 0.015353121801432957, 0.015353121801432957, 0.015353121801432957, 0.016376663254861822, 0.016376663254861822, 0.017400204708290685, 0.016376663254861822, 0.016376663254861822, 0.4452405322415558, 0.019447287615148412, 0.014329580348004094, 0.01330603889457523, 0.01330603889457523, 0.012282497441146366, 0.012282497441146366, 0.01330603889457523, 0.012282497441146366, 0.012282497441146366, 0.012282497441146366, 0.01330603889457523, 0.012282497441146366, 0.012282497441146366, 0.01330603889457523, 0.016376663254861822, 0.016376663254861822, 0.017400204708290685, 0.014329580348004094, 0.014329580348004094, 0.02354145342886387, 0.014329580348004094, 0.015353121801432957, 0.014329580348004094, 0.014329580348004094, 0.014329580348004094, 0.015353121801432957, 0.015353121801432957, 0.015353121801432957, 0.015353121801432957, 0.5445240532241555, 0.0255885363357216, 0.019447287615148412, 0.022517911975435005, 0.02456499488229273, 0.02456499488229273, 0.030706243602865915, 0.022517911975435005, 0.6253838280450358, 0.6530194472876152, 0.7451381780962129, 0.8178096212896623, 0.8526100307062436, 0.8648925281473899, 0.8382804503582395, 0.7676560900716479, 0.7093142272262026, 0.638689866939611, 0.6131013306038895, 0.02968270214943705, 0.02047082906857728, 0.02047082906857728, 0.02047082906857728, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.021494370522006142, 0.02354145342886387, 0.027635619242579325, 0.037871033776867964, 0.06857727737973388, 0.11156601842374617, 0.1750255885363357, 0.4677584442169908], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Asparaginase.gap.json b/pfam_gap_rates/Asparaginase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0988cbc8fcaf90d7c82b612df448bb43c8e059c3
--- /dev/null
+++ b/pfam_gap_rates/Asparaginase.gap.json
@@ -0,0 +1 @@
+{"family": "Asparaginase", "n_seqs": 1832, "length": 243, "gap_rates": [0.3728165938864629, 0.12336244541484716, 0.09661572052401747, 0.0824235807860262, 0.08187772925764192, 0.08187772925764192, 0.08024017467248909, 0.07969432314410481, 0.0769650655021834, 0.0769650655021834, 0.0769650655021834, 0.0769650655021834, 0.0769650655021834, 0.0769650655021834, 0.07478165938864628, 0.07314410480349345, 0.07368995633187773, 0.07478165938864628, 0.07641921397379912, 0.45906113537117904, 0.32805676855895194, 0.08406113537117904, 0.08078602620087336, 0.08569868995633188, 0.4432314410480349, 0.8149563318777293, 0.8635371179039302, 0.7860262008733624, 0.29366812227074235, 0.22216157205240175, 0.06986899563318777, 0.0665938864628821, 0.0638646288209607, 0.0638646288209607, 0.06222707423580786, 0.0611353711790393, 0.06168122270742358, 0.060589519650655024, 0.24945414847161573, 0.9432314410480349, 0.24344978165938866, 0.09115720524017468, 0.07532751091703056, 0.07805676855895197, 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\ No newline at end of file
diff --git a/pfam_gap_rates/AstE_AspA.gap.json b/pfam_gap_rates/AstE_AspA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f585cccbec76f121dc851e0ff47f09060b9fad67
--- /dev/null
+++ b/pfam_gap_rates/AstE_AspA.gap.json
@@ -0,0 +1 @@
+{"family": "AstE_AspA", "n_seqs": 1275, "length": 354, "gap_rates": [0.5850980392156863, 0.36549019607843136, 0.1984313725490196, 0.14588235294117646, 0.12156862745098039, 0.11372549019607843, 0.10431372549019607, 0.1027450980392157, 0.1011764705882353, 0.0988235294117647, 0.06980392156862746, 0.06823529411764706, 0.06823529411764706, 0.06745098039215686, 0.06745098039215686, 0.06666666666666667, 0.06666666666666667, 0.06745098039215686, 0.06823529411764706, 0.06745098039215686, 0.06745098039215686, 0.06745098039215686, 0.06901960784313725, 0.06980392156862746, 0.06901960784313725, 0.07215686274509804, 0.07372549019607844, 0.07372549019607844, 0.09019607843137255, 0.09411764705882353, 0.09098039215686274, 0.09490196078431372, 0.09568627450980392, 0.7811764705882352, 0.8925490196078432, 0.8368627450980393, 0.6635294117647059, 0.07764705882352942, 0.07137254901960784, 0.07058823529411765, 0.07215686274509804, 0.07450980392156863, 0.07294117647058823, 0.06588235294117648, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Autoind_bind.gap.json b/pfam_gap_rates/Autoind_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f609b5bbee2d6971df6482e9dd1e2a7925ce328
--- /dev/null
+++ b/pfam_gap_rates/Autoind_bind.gap.json
@@ -0,0 +1 @@
+{"family": "Autoind_bind", "n_seqs": 470, "length": 164, "gap_rates": [0.674468085106383, 0.4553191489361702, 0.3468085106382979, 0.2957446808510638, 0.2702127659574468, 0.24680851063829787, 0.2276595744680851, 0.2127659574468085, 0.2, 0.19574468085106383, 0.19361702127659575, 0.19148936170212766, 0.1829787234042553, 0.17659574468085107, 0.1702127659574468, 0.1702127659574468, 0.1702127659574468, 0.16808510638297872, 0.16808510638297872, 0.1702127659574468, 0.1702127659574468, 0.16808510638297872, 0.16595744680851063, 0.776595744680851, 0.8531914893617021, 0.8127659574468085, 0.6851063829787234, 0.3574468085106383, 0.33404255319148934, 0.274468085106383, 0.23191489361702128, 0.18936170212765957, 0.15319148936170213, 0.15106382978723404, 0.14468085106382977, 0.13829787234042554, 0.12340425531914893, 0.08723404255319149, 0.07234042553191489, 0.06170212765957447, 0.05531914893617021, 0.036170212765957444, 0.04893617021276596, 0.8595744680851064, 0.027659574468085105, 0.02553191489361702, 0.023404255319148935, 0.04042553191489362, 0.01702127659574468, 0.019148936170212766, 0.02127659574468085, 0.01702127659574468, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.010638297872340425, 0.01276595744680851, 0.02127659574468085, 0.014893617021276596, 0.01276595744680851, 0.01276595744680851, 0.010638297872340425, 0.010638297872340425, 0.00851063829787234, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.006382978723404255, 0.00425531914893617, 0.00851063829787234, 0.00425531914893617, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.006382978723404255, 0.3553191489361702, 0.3574468085106383, 0.3851063829787234, 0.8, 0.9212765957446809, 0.9361702127659575, 0.8319148936170213, 0.7361702127659574, 0.2404255319148936, 0.19787234042553192, 0.12127659574468085, 0.1, 0.07659574468085106, 0.9297872340425531, 0.006382978723404255, 0.006382978723404255, 0.006382978723404255, 0.006382978723404255, 0.006382978723404255, 0.006382978723404255, 0.006382978723404255, 0.006382978723404255, 0.006382978723404255, 0.01276595744680851, 0.01702127659574468, 0.8872340425531915, 0.014893617021276596, 0.00851063829787234, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.01702127659574468, 0.014893617021276596, 0.04468085106382979, 0.023404255319148935, 0.027659574468085105, 0.027659574468085105, 0.031914893617021274, 0.02127659574468085, 0.023404255319148935, 0.7957446808510639, 0.07021276595744681, 0.04042553191489362, 0.0425531914893617, 0.0425531914893617, 0.03829787234042553, 0.8829787234042553, 0.04893617021276596, 0.0425531914893617, 0.04893617021276596, 0.05106382978723404, 0.05319148936170213, 0.06595744680851064, 0.07234042553191489, 0.07234042553191489, 0.07446808510638298, 0.07872340425531915, 0.30638297872340425, 0.37659574468085105, 0.39787234042553193, 0.43617021276595747, 0.8659574468085106, 0.5851063829787234, 0.14468085106382977, 0.13191489361702127, 0.13829787234042554, 0.13829787234042554, 0.13829787234042554, 0.15531914893617021, 0.16808510638297872, 0.18936170212765957, 0.20212765957446807, 0.21914893617021278, 0.2404255319148936, 0.2702127659574468, 0.2957446808510638, 0.3702127659574468, 0.5297872340425532, 0.9191489361702128], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Avl9.gap.json b/pfam_gap_rates/Avl9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a66915575f45cbb804897195fecaacef168f3a09
--- /dev/null
+++ b/pfam_gap_rates/Avl9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AvrRpt-cleavage.gap.json b/pfam_gap_rates/AvrRpt-cleavage.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a628f101a87bed265607ac0d4264f3e67c66e56
--- /dev/null
+++ b/pfam_gap_rates/AvrRpt-cleavage.gap.json
@@ -0,0 +1 @@
+{"family": "AvrRpt-cleavage", "n_seqs": 293, "length": 37, "gap_rates": [0.8191126279863481, 0.37542662116040953, 0.2764505119453925, 0.20136518771331058, 0.13993174061433447, 0.020477815699658702, 0.013651877133105802, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.006825938566552901, 0.006825938566552901, 0.0, 0.09556313993174062, 0.030716723549488054, 0.030716723549488054, 0.06825938566552901, 0.06825938566552901, 0.06484641638225255, 0.10921501706484642, 0.010238907849829351, 0.006825938566552901, 0.0034129692832764505, 0.0034129692832764505, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.010238907849829351, 0.08191126279863481, 0.5017064846416383], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BACON.gap.json b/pfam_gap_rates/BACON.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36101f67dde95365ac1859677d1058d55d986380
--- /dev/null
+++ b/pfam_gap_rates/BACON.gap.json
@@ -0,0 +1 @@
+{"family": "BACON", "n_seqs": 661, "length": 71, "gap_rates": [0.9379727685325264, 0.7155824508320726, 0.4508320726172466, 0.3434190620272315, 0.2723146747352496, 0.22995461422087746, 0.1422087745839637, 0.059001512859304085, 0.03479576399394856, 0.024205748865355523, 0.015128593040847202, 0.015128593040847202, 0.025718608169440244, 0.0226928895612708, 0.6898638426626323, 0.8562783661119516, 0.9409984871406959, 0.9046898638426626, 0.7927382753403933, 0.6051437216338881, 0.0226928895612708, 0.23903177004538578, 0.22844175491679275, 0.06354009077155824, 0.291981845688351, 0.4357034795763994, 0.7065052950075643, 0.9107413010590015, 0.4659606656580938, 0.3600605143721634, 0.08018154311649017, 0.0045385779122541605, 0.0030257186081694403, 0.0015128593040847202, 0.0015128593040847202, 0.0, 0.0015128593040847202, 0.0, 0.0, 0.0, 0.0, 0.10892586989409984, 0.0030257186081694403, 0.0015128593040847202, 0.048411497730711045, 0.9409984871406959, 0.0015128593040847202, 0.0015128593040847202, 0.0015128593040847202, 0.0015128593040847202, 0.0030257186081694403, 0.0030257186081694403, 0.0045385779122541605, 0.015128593040847202, 0.01664145234493192, 0.1573373676248109, 0.1588502269288956, 0.18910741301059, 0.2027231467473525, 0.09379727685325265, 0.07564296520423601, 0.7261724659606656, 0.9258698940998488, 0.8305597579425114, 0.6384266263237519, 0.06354009077155824, 0.07110438729198185, 0.07261724659606657, 0.07715582450832073, 0.08018154311649017, 0.5582450832072617], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BAG.gap.json b/pfam_gap_rates/BAG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..faa07731855c6da1d7c99e0f18b22837161fff93
--- /dev/null
+++ b/pfam_gap_rates/BAG.gap.json
@@ -0,0 +1 @@
+{"family": "BAG", "n_seqs": 665, "length": 99, "gap_rates": [0.6796992481203008, 0.4766917293233083, 0.37894736842105264, 0.3293233082706767, 0.318796992481203, 0.3082706766917293, 0.2887218045112782, 0.2781954887218045, 0.2736842105263158, 0.25263157894736843, 0.24060150375939848, 0.7368421052631579, 0.2075187969924812, 0.19097744360902255, 0.19097744360902255, 0.1774436090225564, 0.17142857142857143, 0.16390977443609023, 0.16390977443609023, 0.16691729323308271, 0.1699248120300752, 0.17443609022556392, 0.3097744360902256, 0.3879699248120301, 0.4421052631578947, 0.649624060150376, 0.8075187969924812, 0.8345864661654135, 0.8781954887218045, 0.8977443609022556, 0.9157894736842105, 0.9293233082706767, 0.9428571428571428, 0.9473684210526315, 0.9428571428571428, 0.9187969924812031, 0.9067669172932331, 0.8887218045112782, 0.8451127819548873, 0.8210526315789474, 0.7714285714285715, 0.47218045112781953, 0.41353383458646614, 0.3774436090225564, 0.17593984962406015, 0.40902255639097745, 0.12030075187969924, 0.10977443609022557, 0.10526315789473684, 0.15338345864661654, 0.14135338345864662, 0.06315789473684211, 0.9263157894736842, 0.8601503759398497, 0.021052631578947368, 0.009022556390977444, 0.004511278195488722, 0.0030075187969924814, 0.0015037593984962407, 0.0, 0.0, 0.0, 0.9052631578947369, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02706766917293233, 0.14135338345864662, 0.0406015037593985, 0.8646616541353384, 0.22857142857142856, 0.21654135338345865, 0.006015037593984963, 0.004511278195488722, 0.004511278195488722, 0.004511278195488722, 0.006015037593984963, 0.006015037593984963, 0.007518796992481203, 0.010526315789473684, 0.010526315789473684, 0.012030075187969926, 0.013533834586466165, 0.015037593984962405, 0.015037593984962405, 0.016541353383458645, 0.01804511278195489, 0.022556390977443608, 0.02857142857142857, 0.03308270676691729, 0.03609022556390978, 0.05413533834586466, 0.24511278195488723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BBL5.gap.json b/pfam_gap_rates/BBL5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b82ec1af89506721ff8d085a612db57c72dc5fa
--- /dev/null
+++ b/pfam_gap_rates/BBL5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BCNT.gap.json b/pfam_gap_rates/BCNT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..464b1346ba3ac7804861769df04d8b4bda6a5029
--- /dev/null
+++ b/pfam_gap_rates/BCNT.gap.json
@@ -0,0 +1 @@
+{"family": "BCNT", "n_seqs": 290, "length": 77, "gap_rates": [0.9379310344827586, 0.5724137931034483, 0.4689655172413793, 0.4, 0.3689655172413793, 0.33793103448275863, 0.3137931034482759, 0.2827586206896552, 0.23103448275862068, 0.2103448275862069, 0.21724137931034482, 0.9379310344827586, 0.5379310344827586, 0.06206896551724138, 0.03793103448275862, 0.027586206896551724, 0.020689655172413793, 0.020689655172413793, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.013793103448275862, 0.013793103448275862, 0.006896551724137931, 0.010344827586206896, 0.010344827586206896, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.8586206896551725, 0.02413793103448276, 0.020689655172413793, 0.017241379310344827, 0.020689655172413793, 0.013793103448275862, 0.017241379310344827, 0.027586206896551724, 0.027586206896551724, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.034482758620689655, 0.03103448275862069, 0.21724137931034482, 0.2896551724137931, 0.03103448275862069, 0.03103448275862069, 0.041379310344827586, 0.041379310344827586, 0.04482758620689655, 0.04482758620689655, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05517241379310345, 0.05862068965517241, 0.05862068965517241, 0.06896551724137931, 0.07586206896551724, 0.08620689655172414, 0.10344827586206896, 0.11379310344827587, 0.1413793103448276, 0.1724137931034483, 0.19310344827586207, 0.2896551724137931, 0.7586206896551724], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BES1_N.gap.json b/pfam_gap_rates/BES1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1fbb08aef6dad5a308f245b69f1a7f47408dc72
--- /dev/null
+++ b/pfam_gap_rates/BES1_N.gap.json
@@ -0,0 +1 @@
+{"family": "BES1_N", "n_seqs": 194, "length": 177, "gap_rates": [0.6391752577319587, 0.30927835051546393, 0.1958762886597938, 0.14432989690721648, 0.13917525773195877, 0.13402061855670103, 0.11855670103092783, 0.10824742268041238, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.10309278350515463, 0.10309278350515463, 0.0979381443298969, 0.10309278350515463, 0.10309278350515463, 0.07216494845360824, 0.07216494845360824, 0.06701030927835051, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.06701030927835051, 0.06701030927835051, 0.07216494845360824, 0.06701030927835051, 0.06701030927835051, 0.06701030927835051, 0.06701030927835051, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.06701030927835051, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.07216494845360824, 0.07216494845360824, 0.8711340206185567, 0.9278350515463918, 0.9329896907216495, 0.9329896907216495, 0.9329896907216495, 0.9432989690721649, 0.9432989690721649, 0.9484536082474226, 0.9432989690721649, 0.9432989690721649, 0.9329896907216495, 0.9329896907216495, 0.9278350515463918, 0.8711340206185567, 0.8608247422680413, 0.05670103092783505, 0.061855670103092786, 0.07731958762886598, 0.0979381443298969, 0.0979381443298969, 0.15979381443298968, 0.35051546391752575, 0.9072164948453608, 0.6391752577319587, 0.422680412371134, 0.3556701030927835, 0.15463917525773196, 0.15463917525773196, 0.14432989690721648, 0.14432989690721648, 0.15979381443298968, 0.14948453608247422, 0.15979381443298968, 0.15463917525773196, 0.14948453608247422, 0.9381443298969072, 0.26804123711340205, 0.15463917525773196, 0.14948453608247422, 0.16494845360824742, 0.16494845360824742, 0.17010309278350516, 0.17010309278350516, 0.17525773195876287, 0.18556701030927836, 0.7525773195876289, 0.4639175257731959, 0.4587628865979381, 0.4639175257731959, 0.4639175257731959, 0.4536082474226804, 0.4587628865979381, 0.4742268041237113, 0.4690721649484536, 0.2422680412371134, 0.25257731958762886, 0.26288659793814434, 0.26288659793814434, 0.28350515463917525, 0.36597938144329895, 0.32989690721649484, 0.36082474226804123, 0.35051546391752575, 0.30412371134020616, 0.31958762886597936, 0.3711340206185567, 0.28350515463917525, 0.28865979381443296, 0.28865979381443296, 0.28865979381443296, 0.865979381443299, 0.8762886597938144, 0.8814432989690721, 0.865979381443299, 0.845360824742268, 0.30412371134020616, 0.31443298969072164, 0.31443298969072164, 0.32989690721649484, 0.34536082474226804, 0.36082474226804123, 0.41237113402061853, 0.5412371134020618, 0.5979381443298969, 0.6804123711340206, 0.6855670103092784, 0.6907216494845361, 0.865979381443299, 0.8350515463917526, 0.711340206185567, 0.6958762886597938, 0.6237113402061856, 0.6030927835051546, 0.5876288659793815, 0.5773195876288659, 0.5773195876288659, 0.5824742268041238, 0.5824742268041238, 0.5824742268041238, 0.5824742268041238, 0.5824742268041238, 0.5824742268041238, 0.6134020618556701, 0.6185567010309279, 0.6391752577319587, 0.6443298969072165, 0.6855670103092784, 0.7835051546391752], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BKACE.gap.json b/pfam_gap_rates/BKACE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c83b05cff7d4a29ccd31f8267d38619cefd344dd
--- /dev/null
+++ b/pfam_gap_rates/BKACE.gap.json
@@ -0,0 +1 @@
+{"family": "BKACE", "n_seqs": 759, "length": 335, "gap_rates": [0.3715415019762846, 0.20421607378129117, 0.12384716732542819, 0.0764163372859025, 0.07114624505928854, 0.06719367588932806, 0.06587615283267458, 0.06587615283267458, 0.06324110671936758, 0.0764163372859025, 0.07246376811594203, 0.1251646903820817, 0.06587615283267458, 0.06324110671936758, 0.061923583662714096, 0.061923583662714096, 0.05401844532279315, 0.05533596837944664, 0.06851119894598155, 0.07378129117259552, 0.0461133069828722, 0.04479578392621871, 0.04084321475625823, 0.03689064558629776, 0.03689064558629776, 0.034255599472990776, 0.03293807641633729, 0.03293807641633729, 0.03293807641633729, 0.03293807641633729, 0.03293807641633729, 0.03293807641633729, 0.03293807641633729, 0.03293807641633729, 0.03293807641633729, 0.03162055335968379, 0.03162055335968379, 0.03162055335968379, 0.03162055335968379, 0.03162055335968379, 0.03162055335968379, 0.03293807641633729, 0.03293807641633729, 0.03293807641633729, 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\ No newline at end of file
diff --git a/pfam_gap_rates/BPL_C.gap.json b/pfam_gap_rates/BPL_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f4fe7e80e027eab582a0e3ca6691b860e00c073
--- /dev/null
+++ b/pfam_gap_rates/BPL_C.gap.json
@@ -0,0 +1 @@
+{"family": "BPL_C", "n_seqs": 1278, "length": 54, "gap_rates": [0.6846635367762128, 0.38028169014084506, 0.2081377151799687, 0.15101721439749607, 0.12128325508607199, 0.10015649452269171, 0.08841940532081377, 0.07902973395931143, 0.07511737089201878, 0.06572769953051644, 0.8262910798122066, 0.14475743348982786, 0.053208137715179966, 0.03755868544600939, 0.03129890453834116, 0.02190923317683881, 0.8528951486697965, 0.04616588419405321, 0.02034428794992175, 0.000782472613458529, 0.000782472613458529, 0.000782472613458529, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.000782472613458529, 0.000782472613458529, 0.000782472613458529, 0.017996870109546165, 0.012519561815336464, 0.010172143974960876, 0.006259780907668232, 0.003912363067292645, 0.8982785602503912, 0.9029733959311425, 0.9006259780907668, 0.8826291079812206, 0.38497652582159625, 0.018779342723004695, 0.011737089201877934, 0.013302034428794992, 0.01564945226917058, 0.018779342723004695, 0.025039123630672927, 0.028951486697965573, 0.03599374021909233, 0.06651017214397496, 0.18857589984350548, 0.30438184663536777, 0.6071987480438185], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BTB_3.gap.json b/pfam_gap_rates/BTB_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1ffc1e028ed8d7143c7c7500f26e4d261b9c689
--- /dev/null
+++ b/pfam_gap_rates/BTB_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BTD.gap.json b/pfam_gap_rates/BTD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5cf094cc8315a910d1a459a8c73273ea02623b65
--- /dev/null
+++ b/pfam_gap_rates/BTD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BTP.gap.json b/pfam_gap_rates/BTP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17f3a3e10dc8a87eac7bd0e831df76f86aa61248
--- /dev/null
+++ b/pfam_gap_rates/BTP.gap.json
@@ -0,0 +1 @@
+{"family": "BTP", "n_seqs": 296, "length": 64, "gap_rates": [0.2905405405405405, 0.12162162162162163, 0.07094594594594594, 0.0472972972972973, 0.04391891891891892, 0.04391891891891892, 0.04391891891891892, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.02364864864864865, 0.02364864864864865, 0.02364864864864865, 0.02364864864864865, 0.02364864864864865, 0.02027027027027027, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.016891891891891893, 0.013513513513513514, 0.013513513513513514, 0.033783783783783786, 0.016891891891891893, 0.010135135135135136, 0.010135135135135136, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.010135135135135136, 0.010135135135135136, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.016891891891891893, 0.02364864864864865, 0.06418918918918919, 0.18243243243243243, 0.6824324324324325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_export_1.gap.json b/pfam_gap_rates/Bac_export_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f567e5c44f4d723419d3a20bc97ea823cc081a4d
--- /dev/null
+++ b/pfam_gap_rates/Bac_export_1.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_export_1", "n_seqs": 1022, "length": 254, "gap_rates": [0.436399217221135, 0.1360078277886497, 0.0684931506849315, 0.04794520547945205, 0.04794520547945205, 0.046966731898238745, 0.043052837573385516, 0.04207436399217221, 0.04207436399217221, 0.0410958904109589, 0.0410958904109589, 0.040117416829745595, 0.03816046966731898, 0.036203522504892366, 0.03228962818003914, 0.03228962818003914, 0.03131115459882583, 0.030332681017612523, 0.029354207436399216, 0.02837573385518591, 0.02837573385518591, 0.02837573385518591, 0.033268101761252444, 0.0273972602739726, 0.022504892367906065, 0.022504892367906065, 0.022504892367906065, 0.019569471624266144, 0.018590998043052837, 0.01761252446183953, 0.01761252446183953, 0.01761252446183953, 0.015655577299412915, 0.015655577299412915, 0.015655577299412915, 0.014677103718199608, 0.014677103718199608, 0.014677103718199608, 0.014677103718199608, 0.014677103718199608, 0.014677103718199608, 0.3131115459882583, 0.6340508806262231, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_globin.gap.json b/pfam_gap_rates/Bac_globin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab47a639766e54bf513d45c9e9a63671a5d51a9d
--- /dev/null
+++ b/pfam_gap_rates/Bac_globin.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_globin", "n_seqs": 1201, "length": 120, "gap_rates": [0.4845961698584513, 0.347210657785179, 0.18734388009991673, 0.17318900915903415, 0.15570358034970858, 0.14487926727726894, 0.13905079100749376, 0.11990008326394672, 0.1582014987510408, 0.04746044962531224, 0.0324729392173189, 0.022481265611990008, 0.020815986677768527, 0.019983347210657785, 0.018318068276436304, 0.017485428809325562, 0.01582014987510408, 0.01498751040799334, 0.01498751040799334, 0.014154870940882597, 0.014154870940882597, 0.012489592006661115, 0.011656952539550375, 0.011656952539550375, 0.011656952539550375, 0.012489592006661115, 0.012489592006661115, 0.012489592006661115, 0.7377185678601166, 0.7110741049125728, 0.038301415487094086, 0.017485428809325562, 0.014154870940882597, 0.011656952539550375, 0.01498751040799334, 0.08492922564529559, 0.022481265611990008, 0.019150707743547043, 0.01582014987510408, 0.012489592006661115, 0.017485428809325562, 0.012489592006661115, 0.011656952539550375, 0.013322231473771857, 0.010824313072439634, 0.009991673605328892, 0.00749375520399667, 0.00749375520399667, 0.00749375520399667, 0.006661115736885929, 0.006661115736885929, 0.006661115736885929, 0.00749375520399667, 0.005828476269775187, 0.005828476269775187, 0.005828476269775187, 0.006661115736885929, 0.01498751040799334, 0.012489592006661115, 0.019150707743547043, 0.019983347210657785, 0.22148209825145712, 0.42631140716069943, 0.414654454621149, 0.21815154038301415, 0.03996669442131557, 0.020815986677768527, 0.018318068276436304, 0.3996669442131557, 0.08992506244796003, 0.02497918401332223, 0.018318068276436304, 0.00832639467110741, 0.009159034138218152, 0.009991673605328892, 0.009159034138218152, 0.009159034138218152, 0.009159034138218152, 0.009991673605328892, 0.009991673605328892, 0.010824313072439634, 0.010824313072439634, 0.012489592006661115, 0.012489592006661115, 0.012489592006661115, 0.012489592006661115, 0.012489592006661115, 0.012489592006661115, 0.013322231473771857, 0.01498751040799334, 0.01498751040799334, 0.01498751040799334, 0.01665278934221482, 0.017485428809325562, 0.018318068276436304, 0.022481265611990008, 0.025811823480432972, 0.02997502081598668, 0.04995836802664446, 0.13072439633638636, 0.11407160699417153, 0.10324729392173189, 0.12073272273105745, 0.13488759367194006, 0.14071606994171523, 0.1540383014154871, 0.1723563696919234, 0.18567860116569526, 0.2073272273105745, 0.2273105745212323, 0.23980016652789343, 0.2556203164029975, 0.27643630308076605, 0.29725228975853457, 0.31557035803497085, 0.3388842631140716, 0.38634471273938387, 0.4537885095753539, 0.5287260616153205, 0.7393838467943381], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Basic.gap.json b/pfam_gap_rates/Basic.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bf12ceb564543d810ae43609b4f80013db11568
--- /dev/null
+++ b/pfam_gap_rates/Basic.gap.json
@@ -0,0 +1 @@
+{"family": "Basic", "n_seqs": 107, "length": 108, "gap_rates": [0.5607476635514018, 0.4485981308411215, 0.42990654205607476, 0.42990654205607476, 0.42990654205607476, 0.42990654205607476, 0.42990654205607476, 0.42990654205607476, 0.42990654205607476, 0.4205607476635514, 0.4205607476635514, 0.5327102803738317, 0.5327102803738317, 0.514018691588785, 0.5046728971962616, 0.3925233644859813, 0.3925233644859813, 0.6635514018691588, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.6542056074766355, 0.8411214953271028, 0.8504672897196262, 0.8317757009345794, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.42990654205607476, 0.5420560747663551, 0.8504672897196262, 0.8598130841121495, 0.8598130841121495, 0.8317757009345794, 0.3644859813084112, 0.35514018691588783, 0.3364485981308411, 0.29906542056074764, 0.27102803738317754, 0.308411214953271, 0.4672897196261682, 0.4205607476635514, 0.8317757009345794, 0.3364485981308411, 0.3925233644859813, 0.35514018691588783, 0.3644859813084112, 0.3644859813084112, 0.35514018691588783, 0.34579439252336447, 0.7663551401869159, 0.9252336448598131, 0.7383177570093458, 0.2803738317757009, 0.7476635514018691, 0.8598130841121495, 0.9252336448598131, 0.9439252336448598, 0.9252336448598131, 0.9065420560747663, 0.7850467289719626, 0.7102803738317757, 0.4672897196261682, 0.308411214953271, 0.9439252336448598, 0.08411214953271028, 0.028037383177570093, 0.018691588785046728, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.17757009345794392, 0.7383177570093458, 0.9252336448598131, 0.9439252336448598, 0.7850467289719626, 0.6448598130841121, 0.0, 0.028037383177570093, 0.09345794392523364, 0.06542056074766354, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.018691588785046728, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Beach.gap.json b/pfam_gap_rates/Beach.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5899795777daf1f2b04b4f14161df43bd30f7cb0
--- /dev/null
+++ b/pfam_gap_rates/Beach.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Bestrophin.gap.json b/pfam_gap_rates/Bestrophin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71ba9e6cb7357df8f8e0ef48cf8a8bc9274dbed7
--- /dev/null
+++ b/pfam_gap_rates/Bestrophin.gap.json
@@ -0,0 +1 @@
+{"family": "Bestrophin", "n_seqs": 1737, "length": 410, "gap_rates": [0.9476108232584917, 0.7973517559009787, 0.7386298215313759, 0.7202072538860104, 0.6971790443293034, 0.6827864133563616, 0.7179044329303397, 0.6079447322970639, 0.5710995970063327, 0.5492227979274611, 0.5233160621761658, 0.514104778353483, 0.4962579159470351, 0.47668393782383417, 0.46171560161197467, 0.44847438111686816, 0.4369602763385147, 0.43120322394933797, 0.42256764536557284, 0.41508347725964306, 0.39953943580886586, 0.39378238341968913, 0.3897524467472654, 0.3776626367299942, 0.3672999424294761, 0.3546344271732873, 0.35060449050086356, 0.34254461715601614, 0.3385146804835924, 0.33275762809441567, 0.3281519861830743, 0.3229706390328152, 0.31951640759930916, 0.3183649971214738, 0.31375935521013243, 0.31318364997121473, 0.3126079447322971, 0.31145653425446174, 0.31088082901554404, 0.3097294185377087, 0.3080023028209557, 0.30915371329879104, 0.30857800805987334, 0.30915371329879104, 0.588370754173863, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Biotin_lipoyl_2.gap.json b/pfam_gap_rates/Biotin_lipoyl_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a37c6d8d50af45e103d4185ac9004764cf331fd3
--- /dev/null
+++ b/pfam_gap_rates/Biotin_lipoyl_2.gap.json
@@ -0,0 +1 @@
+{"family": "Biotin_lipoyl_2", "n_seqs": 3138, "length": 51, "gap_rates": [0.944231994901211, 0.7501593371574251, 0.5073295092415552, 0.35181644359464626, 0.26035691523263227, 0.22753346080305928, 0.19024856596558318, 0.165710643722116, 0.1408540471637986, 0.07233906947100063, 0.04365838113448056, 0.9455066921606119, 0.023581899298916506, 0.012746972594008922, 0.009878903760356916, 0.009241555130656469, 0.0082855321861058, 0.007010834926704908, 0.0057361376673040155, 0.0022307202039515616, 0.0015933715742511153, 0.0012746972594008922, 0.0012746972594008922, 0.0012746972594008922, 0.0012746972594008922, 0.0, 0.0, 0.0, 0.00031867431485022306, 0.00031867431485022306, 0.0006373486297004461, 0.0031867431485022306, 0.004461440407903123, 0.007010834926704908, 0.01752708731676227, 0.028362014021669855, 0.04875717017208413, 0.06755895474824729, 0.09209687699171447, 0.10803059273422562, 0.12332695984703633, 0.1312938177182919, 0.14531548757170173, 0.16252390057361377, 0.18291905672402806, 0.21446781389420014, 0.2552581261950287, 0.3024219247928617, 0.3616953473550032, 0.47036328871892924, 0.7740599107711919], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BolA.gap.json b/pfam_gap_rates/BolA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b54352b836cb584f18ea52e7044cffd3a8a9a431
--- /dev/null
+++ b/pfam_gap_rates/BolA.gap.json
@@ -0,0 +1 @@
+{"family": "BolA", "n_seqs": 1871, "length": 85, "gap_rates": [0.6098343132014965, 0.5510422234099412, 0.5002672367717798, 0.4740780331373597, 0.4521646178514164, 0.4452164617851416, 0.43719935863174775, 0.4307856761090326, 0.42864778193479425, 0.42704436130411544, 0.4243719935863175, 0.4216996258685195, 0.4206306787814003, 0.4179583110636024, 0.4142169962586852, 0.4147514698022448, 0.5050774986638161, 0.5376803848209514, 0.5334045964724746, 0.5408872260823089, 0.5366114377338321, 0.5334045964724746, 0.6664885088188135, 0.7557455905932656, 0.8727952966328166, 0.9492250133618386, 0.9203634420096205, 0.8311063602351684, 0.7017637626937466, 0.5024051309460181, 0.1293425975414217, 0.05024051309460182, 0.029930518439337254, 0.02512025654730091, 0.02244788882950294, 0.018172100481026188, 0.013361838588989846, 0.008017103153393906, 0.0085515766969535, 0.0085515766969535, 0.009086050240513094, 0.008017103153393906, 0.0074826296098343134, 0.008017103153393906, 0.008017103153393906, 0.008017103153393906, 0.0074826296098343134, 0.0074826296098343134, 0.006413682522715126, 0.00694815606627472, 0.00694815606627472, 0.005344735435595938, 0.005344735435595938, 0.0074826296098343134, 0.008017103153393906, 0.0085515766969535, 0.010689470871191877, 0.012827365045430252, 0.012827365045430252, 0.012827365045430252, 0.013361838588989846, 0.013361838588989846, 0.01389631213254944, 0.014430785676109033, 0.014430785676109033, 0.016034206306787813, 0.9139497594869054, 0.016034206306787813, 0.017103153393907, 0.26349545697487975, 0.9396044895777659, 0.8380545163014431, 0.016034206306787813, 0.016568679850347406, 0.017103153393907, 0.017637626937466594, 0.01870657402458578, 0.02351683591662213, 0.02779262426509888, 0.039016568679850344, 0.08444681988241583, 0.1293425975414217, 0.16942811330839125, 0.2506680919294495, 0.4056654195617317], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Brix.gap.json b/pfam_gap_rates/Brix.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3160dac5594d7d8dfe5d3f06f60c3f379c34e3a
--- /dev/null
+++ b/pfam_gap_rates/Brix.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BshC.gap.json b/pfam_gap_rates/BshC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da11d79e65e8bd045e3ae5fb3c76b566d75ebbf1
--- /dev/null
+++ b/pfam_gap_rates/BshC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/C1_4.gap.json b/pfam_gap_rates/C1_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ff9d942792011558a3bc6974824c2f2536a5610
--- /dev/null
+++ b/pfam_gap_rates/C1_4.gap.json
@@ -0,0 +1 @@
+{"family": "C1_4", "n_seqs": 225, "length": 70, "gap_rates": [0.6133333333333333, 0.29777777777777775, 0.29777777777777775, 0.29333333333333333, 0.29333333333333333, 0.29333333333333333, 0.29333333333333333, 0.29333333333333333, 0.29333333333333333, 0.29333333333333333, 0.29777777777777775, 0.3244444444444444, 0.3288888888888889, 0.3377777777777778, 0.35555555555555557, 0.4488888888888889, 0.4444444444444444, 0.5511111111111111, 0.5511111111111111, 0.4888888888888889, 0.6844444444444444, 0.7288888888888889, 0.7644444444444445, 0.8044444444444444, 0.8533333333333334, 0.8666666666666667, 0.9022222222222223, 0.9333333333333333, 0.88, 0.8577777777777778, 0.84, 0.7866666666666666, 0.76, 0.6888888888888889, 0.6577777777777778, 0.4, 0.31555555555555553, 0.23555555555555555, 0.07555555555555556, 0.013333333333333334, 0.008888888888888889, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017777777777777778, 0.0, 0.0, 0.0, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.3511111111111111, 0.5466666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CARD_2.gap.json b/pfam_gap_rates/CARD_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15cae2eba11bd82b0893d43c4a16bf168af3648a
--- /dev/null
+++ b/pfam_gap_rates/CARD_2.gap.json
@@ -0,0 +1 @@
+{"family": "CARD_2", "n_seqs": 110, "length": 96, "gap_rates": [0.8818181818181818, 0.4909090909090909, 0.3090909090909091, 0.23636363636363636, 0.19090909090909092, 0.17272727272727273, 0.15454545454545454, 0.08181818181818182, 0.07272727272727272, 0.07272727272727272, 0.05454545454545454, 0.06363636363636363, 0.045454545454545456, 0.045454545454545456, 0.03636363636363636, 0.03636363636363636, 0.16363636363636364, 0.03636363636363636, 0.16363636363636364, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.7909090909090909, 0.7909090909090909, 0.06363636363636363, 0.4, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.02727272727272727, 0.02727272727272727, 0.01818181818181818, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02727272727272727, 0.0, 0.0, 0.09090909090909091, 0.02727272727272727, 0.00909090909090909, 0.00909090909090909, 0.0, 0.0, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5272727272727272, 0.8181818181818182, 0.34545454545454546, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01818181818181818, 0.00909090909090909, 0.045454545454545456, 0.01818181818181818, 0.045454545454545456, 0.05454545454545454, 0.07272727272727272, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.14545454545454545, 0.2727272727272727, 0.6181818181818182, 0.9363636363636364], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBF.gap.json b/pfam_gap_rates/CBF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2115799280280ca454435b97256449d94075e0e
--- /dev/null
+++ b/pfam_gap_rates/CBF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CBM49.gap.json b/pfam_gap_rates/CBM49.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73c1452bcd401f9e17fb19f9c7ad0ebdbb8bab85
--- /dev/null
+++ b/pfam_gap_rates/CBM49.gap.json
@@ -0,0 +1 @@
+{"family": "CBM49", "n_seqs": 301, "length": 97, "gap_rates": [0.654485049833887, 0.2757475083056478, 0.16943521594684385, 0.1461794019933555, 0.11960132890365449, 0.10299003322259136, 0.09302325581395349, 0.06312292358803986, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.036544850498338874, 0.019933554817275746, 0.019933554817275746, 0.946843853820598, 0.9401993355481728, 0.016611295681063124, 0.016611295681063124, 0.9235880398671097, 0.8106312292358804, 0.03322259136212625, 0.026578073089700997, 0.023255813953488372, 0.023255813953488372, 0.013289036544850499, 0.013289036544850499, 0.013289036544850499, 0.013289036544850499, 0.013289036544850499, 0.009966777408637873, 0.036544850498338874, 0.016611295681063124, 0.009966777408637873, 0.9302325581395349, 0.009966777408637873, 0.013289036544850499, 0.009966777408637873, 0.009966777408637873, 0.009966777408637873, 0.009966777408637873, 0.006644518272425249, 0.0033222591362126247, 0.0, 0.0, 0.0, 0.0, 0.9302325581395349, 0.5282392026578073, 0.03986710963455149, 0.023255813953488372, 0.08637873754152824, 0.654485049833887, 0.920265780730897, 0.946843853820598, 0.6710963455149501, 0.574750830564784, 0.2956810631229236, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9302325581395349, 0.6976744186046512, 0.22259136212624583, 0.0033222591362126247, 0.0033222591362126247, 0.009966777408637873, 0.019933554817275746, 0.019933554817275746, 0.019933554817275746, 0.023255813953488372, 0.0664451827242525, 0.026578073089700997, 0.046511627906976744, 0.046511627906976744, 0.12292358803986711, 0.8604651162790697, 0.9368770764119602, 0.8538205980066446, 0.023255813953488372, 0.019933554817275746, 0.023255813953488372, 0.023255813953488372, 0.026578073089700997, 0.029900332225913623, 0.029900332225913623, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03986710963455149, 0.046511627906976744, 0.08637873754152824, 0.3089700996677741], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM9_1.gap.json b/pfam_gap_rates/CBM9_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f64953a3685d907952c1561abe2ea830ba98ee34
--- /dev/null
+++ b/pfam_gap_rates/CBM9_1.gap.json
@@ -0,0 +1 @@
+{"family": "CBM9_1", "n_seqs": 556, "length": 234, "gap_rates": [0.37050359712230213, 0.23381294964028776, 0.22482014388489208, 0.21942446043165467, 0.21762589928057555, 0.4244604316546763, 0.20503597122302158, 0.19424460431654678, 0.19784172661870503, 0.17266187050359713, 0.17266187050359713, 0.17266187050359713, 0.17446043165467626, 0.17266187050359713, 0.21942446043165467, 0.19784172661870503, 0.17086330935251798, 0.17266187050359713, 0.16546762589928057, 0.1510791366906475, 0.14928057553956833, 0.14928057553956833, 0.18165467625899281, 0.1528776978417266, 0.1510791366906475, 0.3363309352517986, 0.329136690647482, 0.26798561151079137, 0.22302158273381295, 0.8579136690647482, 0.07733812949640288, 0.050359712230215826, 0.044964028776978415, 0.04316546762589928, 0.03776978417266187, 0.030575539568345324, 0.02877697841726619, 0.02877697841726619, 0.02697841726618705, 0.025179856115107913, 0.025179856115107913, 0.023381294964028777, 0.012589928057553957, 0.012589928057553957, 0.012589928057553957, 0.01079136690647482, 0.012589928057553957, 0.01079136690647482, 0.008992805755395683, 0.008992805755395683, 0.008992805755395683, 0.008992805755395683, 0.008992805755395683, 0.008992805755395683, 0.007194244604316547, 0.007194244604316547, 0.89568345323741, 0.7482014388489209, 0.02877697841726619, 0.017985611510791366, 0.019784172661870502, 0.048561151079136694, 0.046762589928057555, 0.05755395683453238, 0.06654676258992806, 0.03776978417266187, 0.33992805755395683, 0.49280575539568344, 0.7877697841726619, 0.89568345323741, 0.7032374100719424, 0.40827338129496404, 0.2931654676258993, 0.0341726618705036, 0.02877697841726619, 0.014388489208633094, 0.014388489208633094, 0.052158273381294966, 0.01618705035971223, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.023381294964028777, 0.02877697841726619, 0.030575539568345324, 0.02877697841726619, 0.02877697841726619, 0.920863309352518, 0.8039568345323741, 0.08992805755395683, 0.07553956834532374, 0.05575539568345324, 0.05575539568345324, 0.050359712230215826, 0.046762589928057555, 0.0539568345323741, 0.06474820143884892, 0.06474820143884892, 0.06294964028776978, 0.06654676258992806, 0.06294964028776978, 0.06474820143884892, 0.07014388489208633, 0.07014388489208633, 0.0737410071942446, 0.07553956834532374, 0.08273381294964029, 0.08273381294964029, 0.3273381294964029, 0.9118705035971223, 0.9496402877697842, 0.8794964028776978, 0.12949640287769784, 0.11690647482014388, 0.10431654676258993, 0.11330935251798561, 0.13489208633093525, 0.32194244604316546, 0.24100719424460432, 0.5485611510791367, 0.6762589928057554, 0.737410071942446, 0.7805755395683454, 0.8165467625899281, 0.8579136690647482, 0.9172661870503597, 0.9244604316546763, 0.8992805755395683, 0.8399280575539568, 0.7985611510791367, 0.7643884892086331, 0.7068345323741008, 0.6151079136690647, 0.43345323741007197, 0.21762589928057555, 0.14028776978417265, 0.09532374100719425, 0.08992805755395683, 0.08812949640287769, 0.08453237410071943, 0.09352517985611511, 0.08633093525179857, 0.08273381294964029, 0.08812949640287769, 0.09172661870503597, 0.08633093525179857, 0.08992805755395683, 0.11870503597122302, 0.920863309352518, 0.08453237410071943, 0.08453237410071943, 0.08633093525179857, 0.9298561151079137, 0.08453237410071943, 0.08633093525179857, 0.08633093525179857, 0.08273381294964029, 0.08273381294964029, 0.08273381294964029, 0.08273381294964029, 0.08273381294964029, 0.9298561151079137, 0.9298561151079137, 0.935251798561151, 0.9442446043165468, 0.9496402877697842, 0.9496402877697842, 0.9370503597122302, 0.9316546762589928, 0.9298561151079137, 0.9298561151079137, 0.1079136690647482, 0.11330935251798561, 0.1223021582733813, 0.8165467625899281, 0.9316546762589928, 0.5863309352517986, 0.35611510791366907, 0.21762589928057555, 0.20323741007194246, 0.21762589928057555, 0.2302158273381295, 0.22661870503597123, 0.24100719424460432, 0.25359712230215825, 0.9496402877697842, 0.26258992805755393, 0.26618705035971224, 0.2751798561151079, 0.30035971223021585, 0.3273381294964029, 0.3902877697841727, 0.4226618705035971, 0.42985611510791366, 0.4352517985611511, 0.9316546762589928, 0.6007194244604317, 0.5, 0.4784172661870504, 0.4748201438848921, 0.4892086330935252, 0.5431654676258992, 0.5035971223021583, 0.5161870503597122, 0.5161870503597122, 0.5143884892086331, 0.5161870503597122, 0.5251798561151079, 0.5269784172661871, 0.5341726618705036, 0.5431654676258992, 0.5575539568345323, 0.5719424460431655, 0.5809352517985612, 0.5773381294964028, 0.5845323741007195, 0.9298561151079137, 0.9154676258992805, 0.6474820143884892, 0.5935251798561151, 0.5863309352517986, 0.5863309352517986, 0.5881294964028777, 0.5881294964028777, 0.591726618705036, 0.6007194244604317, 0.6061151079136691, 0.6115107913669064, 0.6223021582733813, 0.6600719424460432, 0.710431654676259, 0.8938848920863309], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_21.gap.json b/pfam_gap_rates/CBM_21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86d3e0dbdbc4336f2f21c14e68b9b43fc2e28ffa
--- /dev/null
+++ b/pfam_gap_rates/CBM_21.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_21", "n_seqs": 498, "length": 143, "gap_rates": [0.857429718875502, 0.5742971887550201, 0.3674698795180723, 0.22088353413654618, 0.1686746987951807, 0.142570281124498, 0.13855421686746988, 0.13253012048192772, 0.13253012048192772, 0.13052208835341367, 0.1285140562248996, 0.12650602409638553, 0.12248995983935743, 0.11244979919678715, 0.9377510040160643, 0.8393574297188755, 0.38353413654618473, 0.3634538152610442, 0.0783132530120482, 0.07028112449799197, 0.060240963855421686, 0.05823293172690763, 0.05622489959839357, 0.05421686746987952, 0.04819277108433735, 0.040160642570281124, 0.0321285140562249, 0.030120481927710843, 0.030120481927710843, 0.0321285140562249, 0.0321285140562249, 0.0321285140562249, 0.02610441767068273, 0.024096385542168676, 0.02610441767068273, 0.018072289156626505, 0.018072289156626505, 0.01606425702811245, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.02208835341365462, 0.020080321285140562, 0.024096385542168676, 0.018072289156626505, 0.014056224899598393, 0.01606425702811245, 0.01606425702811245, 0.014056224899598393, 0.012048192771084338, 0.014056224899598393, 0.014056224899598393, 0.014056224899598393, 0.014056224899598393, 0.9457831325301205, 0.8895582329317269, 0.6265060240963856, 0.6184738955823293, 0.5943775100401606, 0.42570281124497994, 0.19477911646586346, 0.050200803212851405, 0.04819277108433735, 0.03614457831325301, 0.03413654618473896, 0.030120481927710843, 0.030120481927710843, 0.01606425702811245, 0.9357429718875502, 0.9357429718875502, 0.9357429718875502, 0.9397590361445783, 0.9417670682730924, 0.9417670682730924, 0.9477911646586346, 0.9477911646586346, 0.9477911646586346, 0.9417670682730924, 0.9397590361445783, 0.9397590361445783, 0.9357429718875502, 0.9357429718875502, 0.9357429718875502, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.018072289156626505, 0.020080321285140562, 0.020080321285140562, 0.02610441767068273, 0.040160642570281124, 0.03815261044176707, 0.0642570281124498, 0.0963855421686747, 0.20080321285140562, 0.8875502008032129, 0.9136546184738956, 0.9377510040160643, 0.9497991967871486, 0.9397590361445783, 0.9377510040160643, 0.9036144578313253, 0.7730923694779116, 0.45582329317269077, 0.12048192771084337, 0.0783132530120482, 0.05421686746987952, 0.03815261044176707, 0.028112449799196786, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.02610441767068273, 0.028112449799196786, 0.02610441767068273, 0.030120481927710843, 0.0321285140562249, 0.9257028112449799, 0.9477911646586346, 0.9417670682730924, 0.8714859437751004, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.03815261044176707, 0.040160642570281124, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.05622489959839357, 0.09839357429718876, 0.9377510040160643], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_6.gap.json b/pfam_gap_rates/CBM_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08618d83f62969a0a2d7c6b03c92463afbb1096f
--- /dev/null
+++ b/pfam_gap_rates/CBM_6.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_6", "n_seqs": 1138, "length": 140, "gap_rates": [0.6274165202108963, 0.5307557117750439, 0.5166959578207382, 0.4833040421792619, 0.45782073813708263, 0.4446397188049209, 0.4288224956063269, 0.37697715289982425, 0.30140597539543057, 0.2688927943760984, 0.2451669595782074, 0.23022847100175747, 0.22319859402460457, 0.22759226713532513, 0.2179261862917399, 0.210896309314587, 0.2100175746924429, 0.21441124780316345, 0.8954305799648506, 0.4859402460456942, 0.3998242530755712, 0.9323374340949033, 0.9094903339191565, 0.14147627416520211, 0.09666080843585237, 0.08787346221441125, 0.0773286467486819, 0.070298769771529, 0.06590509666080843, 0.05711775043936731, 0.0492091388400703, 0.04130052724077329, 0.03427065026362039, 0.028119507908611598, 0.023725834797891036, 0.027240773286467488, 0.01845342706502636, 0.016695957820738138, 0.014938488576449912, 0.014059753954305799, 0.45166959578207383, 0.0210896309314587, 0.011423550087873463, 0.029876977152899824, 0.01845342706502636, 0.016695957820738138, 0.013181019332161687, 0.012302284710017574, 0.020210896309314587, 0.28998242530755713, 0.08963093145869948, 0.013181019332161687, 0.013181019332161687, 0.02899824253075571, 0.020210896309314587, 0.020210896309314587, 0.012302284710017574, 0.01054481546572935, 0.01054481546572935, 0.011423550087873463, 0.022847100175746926, 0.0913884007029877, 0.8769771528998243, 0.9112478031634447, 0.7161687170474517, 0.070298769771529, 0.012302284710017574, 0.008787346221441126, 0.008787346221441126, 0.007908611599297012, 0.011423550087873463, 0.014059753954305799, 0.007908611599297012, 0.008787346221441126, 0.9490333919156415, 0.4876977152899824, 0.37434094903339193, 0.22407732864674867, 0.03251318101933216, 0.012302284710017574, 0.009666080843585237, 0.008787346221441126, 0.007029876977152899, 0.006151142355008787, 0.014059753954305799, 0.013181019332161687, 0.04657293497363796, 0.03866432337434095, 0.9209138840070299, 0.030755711775043937, 0.022847100175746926, 0.022847100175746926, 0.029876977152899824, 0.02899824253075571, 0.020210896309314587, 0.05975395430579965, 0.9446397188049209, 0.8848857644991213, 0.04569420035149385, 0.03954305799648506, 0.01845342706502636, 0.019332161687170474, 0.9463971880492091, 0.015817223198594025, 0.015817223198594025, 0.01757469244288225, 0.01757469244288225, 0.01757469244288225, 0.01845342706502636, 0.03602811950790861, 0.8409490333919156, 0.022847100175746926, 0.020210896309314587, 0.021968365553602813, 0.019332161687170474, 0.019332161687170474, 0.019332161687170474, 0.020210896309314587, 0.021968365553602813, 0.02899824253075571, 0.029876977152899824, 0.033391915641476276, 0.13181019332161686, 0.21704745166959577, 0.5641476274165202, 0.8954305799648506, 0.9411247803163445, 0.7609841827768014, 0.44991212653778556, 0.3804920913884007, 0.10105448154657294, 0.10017574692442882, 0.10105448154657294, 0.11423550087873462, 0.12478031634446397, 0.140597539543058, 0.17311072056239016, 0.2117750439367311, 0.4200351493848858, 0.8804920913884007], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBP_BcsQ.gap.json b/pfam_gap_rates/CBP_BcsQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a06dc44e058fbf81694e23cbd11d087a4e1dab01
--- /dev/null
+++ b/pfam_gap_rates/CBP_BcsQ.gap.json
@@ -0,0 +1 @@
+{"family": "CBP_BcsQ", "n_seqs": 124, "length": 254, "gap_rates": [0.717741935483871, 0.6693548387096774, 0.33064516129032256, 0.2661290322580645, 0.25, 0.23387096774193547, 0.23387096774193547, 0.22580645161290322, 0.22580645161290322, 0.20161290322580644, 0.20161290322580644, 0.14516129032258066, 0.12096774193548387, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.08064516129032258, 0.07258064516129033, 0.0967741935483871, 0.9032258064516129, 0.08064516129032258, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.08870967741935484, 0.08064516129032258, 0.9354838709677419, 0.07258064516129033, 0.9274193548387096, 0.08064516129032258, 0.9274193548387096, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CCB1.gap.json b/pfam_gap_rates/CCB1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37951a81948f2a46aa112cc459186fae26f9ca98
--- /dev/null
+++ b/pfam_gap_rates/CCB1.gap.json
@@ -0,0 +1 @@
+{"family": "CCB1", "n_seqs": 106, "length": 182, "gap_rates": [0.27358490566037735, 0.19811320754716982, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.14150943396226415, 0.1320754716981132, 0.1320754716981132, 0.11320754716981132, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.09433962264150944, 0.09433962264150944, 0.08490566037735849, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.6132075471698113, 0.6886792452830188, 0.8113207547169812, 0.839622641509434, 0.8018867924528302, 0.6132075471698113, 0.6132075471698113, 0.08490566037735849, 0.9433962264150944, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.5188679245283019, 0.5094339622641509, 0.49056603773584906, 0.08490566037735849, 0.08490566037735849, 0.07547169811320754, 0.07547169811320754, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.07547169811320754, 0.07547169811320754, 0.0660377358490566, 0.0660377358490566, 0.07547169811320754, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.07547169811320754, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.09433962264150944, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.05660377358490566, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.04716981132075472, 0.04716981132075472, 0.05660377358490566, 0.6698113207547169, 0.8867924528301887, 0.9433962264150944, 0.9433962264150944, 0.9150943396226415, 0.7358490566037735, 0.5754716981132075, 0.1320754716981132, 0.12264150943396226, 0.08490566037735849, 0.07547169811320754, 0.07547169811320754, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.0660377358490566, 0.10377358490566038, 0.11320754716981132, 0.25471698113207547, 0.8207547169811321], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CCT.gap.json b/pfam_gap_rates/CCT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb7a371a2d4c7eb80025d53307647362cae61339
--- /dev/null
+++ b/pfam_gap_rates/CCT.gap.json
@@ -0,0 +1 @@
+{"family": "CCT", "n_seqs": 1024, "length": 43, "gap_rates": [0.0615234375, 0.0380859375, 0.0244140625, 0.021484375, 0.017578125, 0.0107421875, 0.0107421875, 0.0107421875, 0.009765625, 0.0087890625, 0.0087890625, 0.009765625, 0.013671875, 0.0146484375, 0.0087890625, 0.005859375, 0.0048828125, 0.0078125, 0.0029296875, 0.0009765625, 0.0009765625, 0.0029296875, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0009765625, 0.0009765625, 0.0009765625, 0.0009765625, 0.001953125, 0.00390625, 0.0048828125, 0.0048828125, 0.005859375, 0.0068359375, 0.0234375, 0.0263671875, 0.02734375, 0.0302734375, 0.064453125, 0.1494140625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CCT_2.gap.json b/pfam_gap_rates/CCT_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d0b38421be203cf844fb1b343a1bd422823bf56
--- /dev/null
+++ b/pfam_gap_rates/CCT_2.gap.json
@@ -0,0 +1 @@
+{"family": "CCT_2", "n_seqs": 343, "length": 27, "gap_rates": [0.1749271137026239, 0.1457725947521866, 0.1282798833819242, 0.10787172011661808, 0.0029154518950437317, 0.0029154518950437317, 0.0029154518950437317, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0058309037900874635, 0.02040816326530612, 0.09037900874635568, 0.10204081632653061, 0.16326530612244897, 0.924198250728863, 0.16326530612244897, 0.16326530612244897, 0.1749271137026239, 0.1924198250728863, 0.5918367346938775], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDC50.gap.json b/pfam_gap_rates/CDC50.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5921b5f3237a3fff24b744cab35c0ab5685bac96
--- /dev/null
+++ b/pfam_gap_rates/CDC50.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CDO_I.gap.json b/pfam_gap_rates/CDO_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29db938602c256ea3e32a4ae1f8a82def9261762
--- /dev/null
+++ b/pfam_gap_rates/CDO_I.gap.json
@@ -0,0 +1 @@
+{"family": "CDO_I", "n_seqs": 506, "length": 180, "gap_rates": [0.9347826086956522, 0.9229249011857708, 0.8972332015810277, 0.8754940711462451, 0.857707509881423, 0.8458498023715415, 0.8300395256916996, 0.8142292490118577, 0.8043478260869565, 0.7984189723320159, 0.782608695652174, 0.7628458498023716, 0.7569169960474308, 0.7450592885375494, 0.7371541501976284, 0.6798418972332015, 0.6343873517786561, 0.5988142292490118, 0.5790513833992095, 0.5592885375494071, 0.5434782608695652, 0.5355731225296443, 0.5296442687747036, 0.5019762845849802, 0.48616600790513836, 0.45652173913043476, 0.4367588932806324, 0.4268774703557312, 0.4150197628458498, 0.4051383399209486, 0.4308300395256917, 0.41304347826086957, 0.41106719367588934, 0.40711462450592883, 0.41304347826086957, 0.40118577075098816, 0.383399209486166, 0.35968379446640314, 0.33794466403162055, 0.3339920948616601, 0.33201581027667987, 0.9150197628458498, 0.9110671936758893, 0.31225296442687744, 0.308300395256917, 0.30039525691699603, 0.29446640316205536, 0.2608695652173913, 0.22727272727272727, 0.20355731225296442, 0.19367588932806323, 0.9169960474308301, 0.16403162055335968, 0.8992094861660079, 0.13636363636363635, 0.14031620553359683, 0.13043478260869565, 0.12648221343873517, 0.11857707509881422, 0.11067193675889328, 0.9031620553359684, 0.5177865612648221, 0.10474308300395258, 0.1007905138339921, 0.09683794466403162, 0.09486166007905138, 0.09486166007905138, 0.08695652173913043, 0.08300395256916997, 0.07312252964426877, 0.06521739130434782, 0.06719367588932806, 0.06126482213438735, 0.05731225296442688, 0.0533596837944664, 0.05533596837944664, 0.05533596837944664, 0.05533596837944664, 0.0533596837944664, 0.05533596837944664, 0.05533596837944664, 0.04940711462450593, 0.043478260869565216, 0.043478260869565216, 0.045454545454545456, 0.045454545454545456, 0.05138339920948617, 0.20553359683794467, 0.07114624505928854, 0.05533596837944664, 0.05533596837944664, 0.05928853754940711, 0.05138339920948617, 0.043478260869565216, 0.045454545454545456, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.05138339920948617, 0.05533596837944664, 0.04743083003952569, 0.04940711462450593, 0.08498023715415019, 0.08300395256916997, 0.116600790513834, 0.12055335968379446, 0.11857707509881422, 0.10474308300395258, 0.12055335968379446, 0.6818181818181818, 0.8162055335968379, 0.883399209486166, 0.9288537549407114, 0.9387351778656127, 0.9446640316205533, 0.9426877470355731, 0.9347826086956522, 0.9150197628458498, 0.8379446640316206, 0.7687747035573123, 0.616600790513834, 0.1324110671936759, 0.16205533596837945, 0.16205533596837945, 0.16403162055335968, 0.16205533596837945, 0.16600790513833993, 0.16798418972332016, 0.17786561264822134, 0.16600790513833993, 0.16205533596837945, 0.1541501976284585, 0.26679841897233203, 0.18379446640316205, 0.15019762845849802, 0.1067193675889328, 0.07114624505928854, 0.07114624505928854, 0.06521739130434782, 0.06324110671936758, 0.06126482213438735, 0.0691699604743083, 0.06521739130434782, 0.06719367588932806, 0.0691699604743083, 0.0691699604743083, 0.06324110671936758, 0.06521739130434782, 0.06521739130434782, 0.06719367588932806, 0.06719367588932806, 0.07114624505928854, 0.07707509881422925, 0.07509881422924901, 0.07905138339920949, 0.5177865612648221, 0.11067193675889328, 0.07905138339920949, 0.08102766798418973, 0.07905138339920949, 0.07707509881422925, 0.07707509881422925, 0.07905138339920949, 0.07905138339920949, 0.08498023715415019, 0.09486166007905138, 0.17786561264822134, 0.24110671936758893, 0.2628458498023715, 0.27865612648221344, 0.3241106719367589, 0.36363636363636365, 0.383399209486166, 0.4268774703557312, 0.45652173913043476, 0.4762845849802372, 0.5849802371541502, 0.758893280632411, 0.8913043478260869], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CENP-C_C.gap.json b/pfam_gap_rates/CENP-C_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e0ca3e562f6c71d8610eaa1b6308ce62d3e6a97
--- /dev/null
+++ b/pfam_gap_rates/CENP-C_C.gap.json
@@ -0,0 +1 @@
+{"family": "CENP-C_C", "n_seqs": 166, "length": 88, "gap_rates": [0.42168674698795183, 0.28313253012048195, 0.1566265060240964, 0.13855421686746988, 0.1144578313253012, 0.09036144578313253, 0.08433734939759036, 0.07228915662650602, 0.07228915662650602, 0.8795180722891566, 0.06626506024096386, 0.608433734939759, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.024096385542168676, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.024096385542168676, 0.024096385542168676, 0.030120481927710843, 0.06626506024096386, 0.0783132530120482, 0.09036144578313253, 0.09036144578313253, 0.09036144578313253, 0.09036144578313253, 0.09036144578313253, 0.0963855421686747, 0.10240963855421686, 0.9216867469879518, 0.0963855421686747, 0.0963855421686747, 0.10843373493975904, 0.10843373493975904, 0.12650602409638553, 0.12650602409638553, 0.13855421686746988, 0.13855421686746988, 0.1927710843373494, 0.25301204819277107], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHASE.gap.json b/pfam_gap_rates/CHASE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af6fa06042bdc607ca2c0535153accee62f7aea4
--- /dev/null
+++ b/pfam_gap_rates/CHASE.gap.json
@@ -0,0 +1 @@
+{"family": "CHASE", "n_seqs": 727, "length": 220, "gap_rates": [0.5419532324621733, 0.43878954607977994, 0.38514442916093533, 0.3631361760660248, 0.35075653370013754, 0.3452544704264099, 0.34112792297111416, 0.33837689133425036, 0.3342503438789546, 0.3328748280605227, 0.3328748280605227, 0.3328748280605227, 0.3328748280605227, 0.33012379642365886, 0.33012379642365886, 0.3328748280605227, 0.32737276478679506, 0.328748280605227, 0.32599724896836313, 0.7083906464924347, 0.686382393397524, 0.32737276478679506, 0.3081155433287483, 0.30674002751031637, 0.30261348005502064, 0.29573590096286106, 0.29298486932599727, 0.2902338376891334, 0.28885832187070154, 0.2902338376891334, 0.2874828060522696, 0.28473177441540576, 0.2874828060522696, 0.29298486932599727, 0.2902338376891334, 0.2902338376891334, 0.28473177441540576, 0.28060522696011003, 0.27785419532324623, 0.27785419532324623, 0.2764786795048143, 0.2764786795048143, 0.2764786795048143, 0.8541953232462174, 0.936726272352132, 0.9257221458046767, 0.8541953232462174, 0.2874828060522696, 0.9477303988995873, 0.40715268225584594, 0.4016506189821183, 0.46354883081155435, 0.38376891334250346, 0.37276478679504815, 0.36176066024759285, 0.34112792297111416, 0.33837689133425036, 0.2737276478679505, 0.2696011004126547, 0.25997248968363135, 0.2585969738651995, 0.686382393397524, 0.7386519944979367, 0.781292984869326, 0.8143053645116919, 0.9284731774415406, 0.9449793672627235, 0.8514442916093535, 0.796423658872077, 0.7592847317744154, 0.7221458046767538, 0.657496561210454, 0.2696011004126547, 0.3878954607977992, 0.28885832187070154, 0.8528198074277854, 0.8679504814305364, 0.9009628610729024, 0.9270976616231087, 0.8858321870701513, 0.8638239339752407, 0.844566712517194, 0.27097661623108665, 0.22558459422283356, 0.20907840440165062, 0.2063273727647868, 0.1499312242090784, 0.08390646492434663, 0.030261348005502064, 0.02888583218707015, 0.026134800550206328, 0.03163686382393398, 0.026134800550206328, 0.026134800550206328, 0.024759284731774415, 0.024759284731774415, 0.026134800550206328, 0.04126547455295736, 0.2077028885832187, 0.18844566712517194, 0.7757909215955984, 0.027510316368638238, 0.026134800550206328, 0.02200825309491059, 0.016506189821182942, 0.03163686382393398, 0.015130674002751032, 0.015130674002751032, 0.012379642365887207, 0.013755158184319119, 0.012379642365887207, 0.013755158184319119, 0.012379642365887207, 0.012379642365887207, 0.009628610729023384, 0.011004126547455296, 0.012379642365887207, 0.011004126547455296, 0.012379642365887207, 0.011004126547455296, 0.009628610729023384, 0.009628610729023384, 0.009628610729023384, 0.009628610729023384, 0.009628610729023384, 0.011004126547455296, 0.009628610729023384, 0.011004126547455296, 0.015130674002751032, 0.012379642365887207, 0.013755158184319119, 0.012379642365887207, 0.011004126547455296, 0.05089408528198074, 0.059147180192572216, 0.059147180192572216, 0.6795048143053645, 0.9408528198074277, 0.7909215955983494, 0.5061898211829436, 0.4828060522696011, 0.3603851444291609, 0.016506189821182942, 0.011004126547455296, 0.011004126547455296, 0.012379642365887207, 0.013755158184319119, 0.013755158184319119, 0.013755158184319119, 0.012379642365887207, 0.012379642365887207, 0.012379642365887207, 0.012379642365887207, 0.012379642365887207, 0.012379642365887207, 0.013755158184319119, 0.8885832187070152, 0.4360385144429161, 0.38376891334250346, 0.5639614855570839, 0.36451169188445665, 0.3466299862448418, 0.33012379642365886, 0.2737276478679505, 0.24346629986244842, 0.218707015130674, 0.18019257221458046, 0.14442916093535077, 0.8170563961485557, 0.07702888583218707, 0.10453920220082531, 0.033012379642365884, 0.030261348005502064, 0.02888583218707015, 0.02888583218707015, 0.030261348005502064, 0.03163686382393398, 0.033012379642365884, 0.033012379642365884, 0.033012379642365884, 0.033012379642365884, 0.033012379642365884, 0.033012379642365884, 0.03576341127922971, 0.03851444291609354, 0.03851444291609354, 0.039889958734525444, 0.22833562585969738, 0.052269601100412656, 0.0577716643741403, 0.11416781292984869, 0.5240715268225584, 0.5144429160935351, 0.8528198074277854, 0.5680880330123796, 0.45254470426409904, 0.3108665749656121, 0.1815680880330124, 0.17606602475928473, 0.17056396148555708, 0.1746905089408528, 0.1746905089408528, 0.1815680880330124, 0.18844566712517194, 0.9477303988995873, 0.9270976616231087, 0.21045392022008252, 0.218707015130674, 0.23383768913342504, 0.41815680880330125, 0.3631361760660248, 0.38376891334250346, 0.4030261348005502, 0.4305364511691884, 0.45529573590096284, 0.48830811554332876, 0.5144429160935351, 0.562585969738652, 0.5955983493810179, 0.6643741403026134], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHASE3.gap.json b/pfam_gap_rates/CHASE3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf6687a3e590a7945b0380d31bfe7fd81e8e2c8c
--- /dev/null
+++ b/pfam_gap_rates/CHASE3.gap.json
@@ -0,0 +1 @@
+{"family": "CHASE3", "n_seqs": 711, "length": 145, "gap_rates": [0.9465541490857946, 0.6132208157524613, 0.4388185654008439, 0.33755274261603374, 0.270042194092827, 0.22784810126582278, 0.20815752461322082, 0.18565400843881857, 0.15330520393811534, 0.13220815752461323, 0.1111111111111111, 0.08860759493670886, 0.06891701828410689, 0.04781997187060478, 0.0379746835443038, 0.035161744022503515, 0.02531645569620253, 0.02109704641350211, 0.01969057665260197, 0.01828410689170183, 0.01828410689170183, 0.012658227848101266, 0.012658227848101266, 0.011251758087201125, 0.009845288326300985, 0.009845288326300985, 0.009845288326300985, 0.009845288326300985, 0.009845288326300985, 0.009845288326300985, 0.008438818565400843, 0.007032348804500703, 0.005625879043600563, 0.005625879043600563, 0.005625879043600563, 0.005625879043600563, 0.005625879043600563, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.005625879043600563, 0.007032348804500703, 0.007032348804500703, 0.008438818565400843, 0.008438818565400843, 0.007032348804500703, 0.009845288326300985, 0.011251758087201125, 0.008438818565400843, 0.008438818565400843, 0.007032348804500703, 0.007032348804500703, 0.008438818565400843, 0.009845288326300985, 0.009845288326300985, 0.008438818565400843, 0.009845288326300985, 0.009845288326300985, 0.009845288326300985, 0.016877637130801686, 0.014064697609001406, 0.014064697609001406, 0.13783403656821377, 0.03234880450070324, 0.02390998593530239, 0.01828410689170183, 0.014064697609001406, 0.012658227848101266, 0.012658227848101266, 0.011251758087201125, 0.012658227848101266, 0.012658227848101266, 0.014064697609001406, 0.014064697609001406, 0.014064697609001406, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.014064697609001406, 0.014064697609001406, 0.015471167369901548, 0.7257383966244726, 0.02250351617440225, 0.02109704641350211, 0.02109704641350211, 0.01969057665260197, 0.02109704641350211, 0.02109704641350211, 0.02250351617440225, 0.02390998593530239, 0.02390998593530239, 0.02250351617440225, 0.026722925457102673, 0.02812939521800281, 0.8607594936708861, 0.8931082981715893, 0.9282700421940928, 0.8776371308016878, 0.8129395218002813, 0.21237693389592124, 0.10126582278481013, 0.06891701828410689, 0.07454289732770746, 0.9451476793248945, 0.052039381153305204, 0.04219409282700422, 0.035161744022503515, 0.03234880450070324, 0.03375527426160337, 0.03938115330520394, 0.053445850914205346, 0.15611814345991562, 0.13642756680731363, 0.08438818565400844, 0.057665260196905765, 0.05485232067510549, 0.06047819971870605, 0.053445850914205346, 0.053445850914205346, 0.04922644163150492, 0.04781997187060478, 0.04781997187060478, 0.04781997187060478, 0.052039381153305204, 0.053445850914205346, 0.053445850914205346, 0.05625879043600562, 0.05907172995780591, 0.06047819971870605, 0.06751054852320675, 0.07876230661040788, 0.09282700421940929, 0.10829817158931083, 0.12376933895921238, 0.13924050632911392, 0.16033755274261605, 0.189873417721519, 0.2180028129395218, 0.2559774964838256, 0.31223628691983124, 0.38677918424753865, 0.5513361462728551, 0.9423347398030942], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHASE8.gap.json b/pfam_gap_rates/CHASE8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17c7a4d868b4b8a410f4b64d72c96c2a6b7e3b7b
--- /dev/null
+++ b/pfam_gap_rates/CHASE8.gap.json
@@ -0,0 +1 @@
+{"family": "CHASE8", "n_seqs": 201, "length": 126, "gap_rates": [0.8407960199004975, 0.48258706467661694, 0.36318407960199006, 0.24378109452736318, 0.1890547263681592, 0.15920398009950248, 0.09950248756218906, 0.07462686567164178, 0.03980099502487562, 0.03980099502487562, 0.03482587064676617, 0.014925373134328358, 0.009950248756218905, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.024875621890547265, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009950248756218905, 0.004975124378109453, 0.004975124378109453, 0.009950248756218905, 0.009950248756218905, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.01990049751243781, 0.04975124378109453, 0.6766169154228856, 0.8407960199004975, 0.9402985074626866, 0.9154228855721394, 0.746268656716418, 0.582089552238806, 0.08955223880597014, 0.10945273631840796, 0.10945273631840796, 0.12437810945273632, 0.11442786069651742, 0.09950248756218906, 0.09950248756218906, 0.08955223880597014, 0.0945273631840796, 0.11442786069651742, 0.11442786069651742, 0.11940298507462686, 0.11940298507462686, 0.14925373134328357, 0.15920398009950248, 0.14427860696517414, 0.20398009950248755, 0.14925373134328357, 0.47761194029850745, 0.7313432835820896, 0.8059701492537313, 0.835820895522388, 0.8557213930348259, 0.8606965174129353, 0.8855721393034826, 0.9154228855721394, 0.9402985074626866, 0.945273631840796, 0.9203980099502488, 0.8955223880597015, 0.8656716417910447, 0.8557213930348259, 0.8507462686567164, 0.8208955223880597, 0.7711442786069652, 0.527363184079602, 0.4527363184079602, 0.11442786069651742, 0.11442786069651742, 0.11940298507462686, 0.11940298507462686, 0.12935323383084577, 0.12935323383084577, 0.12935323383084577, 0.12935323383084577, 0.13432835820895522, 0.13432835820895522, 0.13432835820895522, 0.13432835820895522, 0.14427860696517414, 0.19402985074626866], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CIAPIN1.gap.json b/pfam_gap_rates/CIAPIN1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8beb733cf63af991e88ce31dd0c8435bf027bf1d
--- /dev/null
+++ b/pfam_gap_rates/CIAPIN1.gap.json
@@ -0,0 +1 @@
+{"family": "CIAPIN1", "n_seqs": 401, "length": 107, "gap_rates": [0.8703241895261845, 0.7481296758104738, 0.6807980049875312, 0.5935162094763092, 0.5236907730673317, 0.49625935162094764, 0.47880299251870323, 0.9476309226932669, 0.9027431421446384, 0.5211970074812967, 0.6359102244389028, 0.516209476309227, 0.38902743142144636, 0.3865336658354115, 0.38154613466334164, 0.38154613466334164, 0.3790523690773067, 0.3790523690773067, 0.3790523690773067, 0.3790523690773067, 0.3790523690773067, 0.3790523690773067, 0.3790523690773067, 0.3790523690773067, 0.3765586034912718, 0.3765586034912718, 0.3790523690773067, 0.3790523690773067, 0.3765586034912718, 0.3765586034912718, 0.3740648379052369, 0.3740648379052369, 0.3765586034912718, 0.3765586034912718, 0.4164588528678304, 0.4713216957605985, 0.5511221945137157, 0.5860349127182045, 0.6084788029925187, 0.6034912718204489, 0.6184538653366584, 0.6184538653366584, 0.6184538653366584, 0.6408977556109726, 0.6608478802992519, 0.6758104738154613, 0.7007481296758105, 0.8229426433915212, 0.8927680798004988, 0.9002493765586035, 0.9376558603491272, 0.942643391521197, 0.9351620947630923, 0.8952618453865336, 0.8802992518703242, 0.6034912718204489, 0.5935162094763092, 0.5910224438902744, 0.5835411471321695, 0.57356608478803, 0.5660847880299252, 0.5810473815461347, 0.6234413965087282, 0.600997506234414, 0.5660847880299252, 0.5610972568578554, 0.5461346633416458, 0.571072319201995, 0.5261845386533666, 0.4014962593516209, 0.32169576059850374, 0.2892768079800499, 0.2144638403990025, 0.1770573566084788, 0.16957605985037408, 0.17206982543640897, 0.16957605985037408, 0.16708229426433915, 0.16708229426433915, 0.16209476309226933, 0.16209476309226933, 0.16209476309226933, 0.16209476309226933, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.1596009975062344, 0.16458852867830423, 0.16708229426433915, 0.16708229426433915, 0.16708229426433915, 0.16708229426433915, 0.16957605985037408, 0.18453865336658354, 0.18952618453865336, 0.2144638403990025, 0.26184538653366585, 0.2892768079800499, 0.38403990024937656], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CIDE-N.gap.json b/pfam_gap_rates/CIDE-N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eab32435d7e7a113ce61d254c9246a2cc96da845
--- /dev/null
+++ b/pfam_gap_rates/CIDE-N.gap.json
@@ -0,0 +1 @@
+{"family": "CIDE-N", "n_seqs": 162, "length": 78, "gap_rates": [0.7469135802469136, 0.22839506172839505, 0.16666666666666666, 0.1419753086419753, 0.1419753086419753, 0.12345679012345678, 0.12345679012345678, 0.12345679012345678, 0.12345679012345678, 0.13580246913580246, 0.13580246913580246, 0.12962962962962962, 0.12345679012345678, 0.12345679012345678, 0.12345679012345678, 0.12345679012345678, 0.12345679012345678, 0.12345679012345678, 0.12962962962962962, 0.12345679012345678, 0.12345679012345678, 0.11728395061728394, 0.11728395061728394, 0.1111111111111111, 0.1111111111111111, 0.11728395061728394, 0.11728395061728394, 0.1111111111111111, 0.09876543209876543, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09876543209876543, 0.08641975308641975, 0.2962962962962963, 0.8209876543209876, 0.6172839506172839, 0.09876543209876543, 0.043209876543209874, 0.037037037037037035, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.030864197530864196, 0.037037037037037035, 0.09259259259259259, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.12345679012345678, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.024691358024691357, 0.018518518518518517, 0.024691358024691357, 0.030864197530864196, 0.024691358024691357, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.037037037037037035, 0.043209876543209874, 0.04938271604938271, 0.04938271604938271, 0.06790123456790123, 0.08024691358024691, 0.09876543209876543, 0.17901234567901234, 0.4876543209876543], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CKS.gap.json b/pfam_gap_rates/CKS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..544df58730cccc0d1b6803649e8c36f2bf343170
--- /dev/null
+++ b/pfam_gap_rates/CKS.gap.json
@@ -0,0 +1 @@
+{"family": "CKS", "n_seqs": 451, "length": 85, "gap_rates": [0.24390243902439024, 0.12416851441241686, 0.09534368070953436, 0.09312638580931264, 0.09090909090909091, 0.08869179600886919, 0.08869179600886919, 0.08425720620842572, 0.08425720620842572, 0.082039911308204, 0.07538802660753881, 0.06873614190687362, 0.06651884700665188, 0.04878048780487805, 0.03547671840354767, 0.031042128603104215, 0.031042128603104215, 0.022172949002217297, 0.022172949002217297, 0.022172949002217297, 0.019955654101995565, 0.022172949002217297, 0.019955654101995565, 0.022172949002217297, 0.022172949002217297, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.9002217294900222, 0.9068736141906873, 0.9201773835920177, 0.9090909090909091, 0.9068736141906873, 0.893569844789357, 0.04656319290465632, 0.70509977827051, 0.7073170731707317, 0.7095343680709535, 0.729490022172949, 0.9246119733924612, 0.7405764966740577, 0.720620842572062, 0.7073170731707317, 0.70509977827051, 0.7006651884700665, 0.017738359201773836, 0.017738359201773836, 0.015521064301552107, 0.015521064301552107, 0.013303769401330377, 0.013303769401330377, 0.013303769401330377, 0.013303769401330377, 0.013303769401330377, 0.015521064301552107, 0.9090909090909091, 0.015521064301552107, 0.015521064301552107, 0.017738359201773836, 0.017738359201773836, 0.019955654101995565, 0.024390243902439025, 0.031042128603104215, 0.031042128603104215, 0.031042128603104215, 0.03325942350332594, 0.03325942350332594, 0.03325942350332594, 0.03325942350332594, 0.03325942350332594, 0.03547671840354767, 0.03991130820399113, 0.05543237250554324, 0.06208425720620843, 0.06430155210643015, 0.06430155210643015, 0.07538802660753881, 0.07760532150776053, 0.07982261640798226, 0.07982261640798226, 0.08647450110864745, 0.12638580931263857, 0.164079822616408, 0.8137472283813747], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CLP1_N.gap.json b/pfam_gap_rates/CLP1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c904c693cc81fe4f3136d7ec4031ca64e62d5654
--- /dev/null
+++ b/pfam_gap_rates/CLP1_N.gap.json
@@ -0,0 +1 @@
+{"family": "CLP1_N", "n_seqs": 336, "length": 111, "gap_rates": [0.5654761904761905, 0.15476190476190477, 0.13095238095238096, 0.12202380952380952, 0.12202380952380952, 0.11904761904761904, 0.11904761904761904, 0.11607142857142858, 0.11607142857142858, 0.1130952380952381, 0.11011904761904762, 0.1130952380952381, 0.10714285714285714, 0.10714285714285714, 0.10416666666666667, 0.9136904761904762, 0.15178571428571427, 0.19940476190476192, 0.9464285714285714, 0.10416666666666667, 0.09226190476190477, 0.08928571428571429, 0.08035714285714286, 0.06547619047619048, 0.06547619047619048, 0.9494047619047619, 0.047619047619047616, 0.041666666666666664, 0.9494047619047619, 0.9494047619047619, 0.9494047619047619, 0.01488095238095238, 0.01488095238095238, 0.01488095238095238, 0.01488095238095238, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.011904761904761904, 0.011904761904761904, 0.017857142857142856, 0.017857142857142856, 0.01488095238095238, 0.01488095238095238, 0.011904761904761904, 0.37797619047619047, 0.023809523809523808, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.011904761904761904, 0.011904761904761904, 0.01488095238095238, 0.01488095238095238, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.020833333333333332, 0.020833333333333332, 0.03869047619047619, 0.08928571428571429, 0.06547619047619048, 0.07738095238095238, 0.07142857142857142, 0.0625, 0.7946428571428571, 0.8571428571428571, 0.9345238095238095, 0.9434523809523809, 0.9494047619047619, 0.9494047619047619, 0.9464285714285714, 0.9375, 0.9315476190476191, 0.8125, 0.7767857142857143, 0.08630952380952381, 0.06547619047619048, 0.050595238095238096, 0.044642857142857144, 0.044642857142857144, 0.05654761904761905, 0.8601190476190477, 0.05357142857142857, 0.05357142857142857, 0.047619047619047616, 0.9494047619047619, 0.050595238095238096, 0.050595238095238096, 0.050595238095238096, 0.050595238095238096, 0.050595238095238096, 0.050595238095238096, 0.05357142857142857, 0.05654761904761905, 0.05952380952380952, 0.06845238095238096, 0.06845238095238096, 0.07142857142857142, 0.07738095238095238, 0.08035714285714286, 0.08630952380952381, 0.09821428571428571, 0.21726190476190477, 0.38392857142857145], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CLZ.gap.json b/pfam_gap_rates/CLZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae462eb91021debe7e5bf12ddd487cfa26425552
--- /dev/null
+++ b/pfam_gap_rates/CLZ.gap.json
@@ -0,0 +1 @@
+{"family": "CLZ", "n_seqs": 143, "length": 73, "gap_rates": [0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.7062937062937062, 0.2097902097902098, 0.15384615384615385, 0.14685314685314685, 0.04195804195804196, 0.027972027972027972, 0.8741258741258742, 0.027972027972027972, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.02097902097902098, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.02097902097902098, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.03496503496503497, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.055944055944055944, 0.055944055944055944, 0.06293706293706294, 0.11188811188811189, 0.5034965034965035], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COE1_DBD.gap.json b/pfam_gap_rates/COE1_DBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..867d6f56aadcbd7f3d67a3f5cc88cfd78884e999
--- /dev/null
+++ b/pfam_gap_rates/COE1_DBD.gap.json
@@ -0,0 +1 @@
+{"family": "COE1_DBD", "n_seqs": 188, "length": 231, "gap_rates": [0.8936170212765957, 0.824468085106383, 0.7872340425531915, 0.776595744680851, 0.75, 0.7446808510638298, 0.7393617021276596, 0.7074468085106383, 0.7074468085106383, 0.6914893617021277, 0.6595744680851063, 0.648936170212766, 0.6436170212765957, 0.6329787234042553, 0.6276595744680851, 0.6276595744680851, 0.6436170212765957, 0.6861702127659575, 0.6702127659574468, 0.648936170212766, 0.6329787234042553, 0.6276595744680851, 0.601063829787234, 0.5957446808510638, 0.6436170212765957, 0.6063829787234043, 0.5691489361702128, 0.4787234042553192, 0.43617021276595747, 0.4148936170212766, 0.3776595744680851, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3351063829787234, 0.3351063829787234, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.32978723404255317, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3351063829787234, 0.32978723404255317, 0.3351063829787234, 0.3351063829787234, 0.32978723404255317, 0.3351063829787234, 0.324468085106383, 0.31382978723404253, 0.3351063829787234, 0.35106382978723405, 0.35106382978723405, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35106382978723405, 0.35106382978723405, 0.35106382978723405, 0.35106382978723405, 0.35106382978723405, 0.35106382978723405, 0.35106382978723405, 0.35106382978723405, 0.35638297872340424, 0.3617021276595745, 0.3670212765957447, 0.3670212765957447, 0.3617021276595745, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35106382978723405, 0.35106382978723405, 0.3351063829787234, 0.3191489361702128, 0.31382978723404253, 0.32978723404255317, 0.3351063829787234, 0.3351063829787234, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.35106382978723405, 0.35638297872340424, 0.35106382978723405, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35638297872340424, 0.35106382978723405, 0.34574468085106386, 0.34574468085106386, 0.35106382978723405, 0.35106382978723405, 0.34574468085106386, 0.34574468085106386, 0.34574468085106386, 0.34574468085106386, 0.34574468085106386, 0.3404255319148936, 0.3351063829787234, 0.3351063829787234, 0.3191489361702128, 0.31382978723404253, 0.39361702127659576, 0.4095744680851064, 0.44680851063829785, 0.44680851063829785, 0.44148936170212766, 0.44148936170212766, 0.44148936170212766, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44148936170212766, 0.44680851063829785, 0.44680851063829785, 0.4095744680851064, 0.4095744680851064, 0.40425531914893614, 0.39893617021276595, 0.35638297872340424, 0.3351063829787234, 0.3404255319148936, 0.3404255319148936, 0.34574468085106386, 0.34574468085106386, 0.34574468085106386, 0.34574468085106386, 0.34574468085106386, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.3404255319148936, 0.34574468085106386, 0.34574468085106386, 0.35106382978723405, 0.35106382978723405, 0.35106382978723405, 0.35638297872340424, 0.3670212765957447, 0.3670212765957447, 0.3670212765957447, 0.5957446808510638], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COG6.gap.json b/pfam_gap_rates/COG6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40d54675f6c0929e871fb77a39b31a48a9744d93
--- /dev/null
+++ b/pfam_gap_rates/COG6.gap.json
@@ -0,0 +1 @@
+{"family": "COG6", "n_seqs": 364, "length": 749, "gap_rates": [0.7142857142857143, 0.5686813186813187, 0.5631868131868132, 0.554945054945055, 0.5521978021978022, 0.5412087912087912, 0.5439560439560439, 0.5412087912087912, 0.5302197802197802, 0.510989010989011, 0.48626373626373626, 0.47802197802197804, 0.4340659340659341, 0.40934065934065933, 0.3983516483516483, 0.3543956043956044, 0.34615384615384615, 0.34065934065934067, 0.33516483516483514, 0.32967032967032966, 0.32967032967032966, 0.3269230769230769, 0.3241758241758242, 0.3159340659340659, 0.3159340659340659, 0.3131868131868132, 0.31043956043956045, 0.31043956043956045, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.30494505494505497, 0.3021978021978022, 0.29945054945054944, 0.29945054945054944, 0.3021978021978022, 0.29945054945054944, 0.29945054945054944, 0.29945054945054944, 0.2967032967032967, 0.29395604395604397, 0.29945054945054944, 0.29945054945054944, 0.29945054945054944, 0.3021978021978022, 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\ No newline at end of file
diff --git a/pfam_gap_rates/COPI_C.gap.json b/pfam_gap_rates/COPI_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c7b7e3addaaa7fef049061e7b77ec4ecaf921ef
--- /dev/null
+++ b/pfam_gap_rates/COPI_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COPI_assoc.gap.json b/pfam_gap_rates/COPI_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9922722f353d9490905465fd61d3f02ab7cfef0b
--- /dev/null
+++ b/pfam_gap_rates/COPI_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "COPI_assoc", "n_seqs": 321, "length": 163, "gap_rates": [0.8566978193146417, 0.4454828660436137, 0.3177570093457944, 0.26479750778816197, 0.22741433021806853, 0.19937694704049844, 0.17133956386292834, 0.1277258566978193, 0.11838006230529595, 0.1059190031152648, 0.09657320872274143, 0.0778816199376947, 0.07476635514018691, 0.07165109034267912, 0.059190031152647975, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.059190031152647975, 0.056074766355140186, 0.059190031152647975, 0.07165109034267912, 0.10903426791277258, 0.12149532710280374, 0.18691588785046728, 0.5887850467289719, 0.7663551401869159, 0.822429906542056, 0.9034267912772586, 0.8068535825545171, 0.6697819314641744, 0.48909657320872274, 0.2803738317757009, 0.9190031152647975, 0.1557632398753894, 0.04672897196261682, 0.04361370716510903, 0.03426791277258567, 0.03426791277258567, 0.03426791277258567, 0.03426791277258567, 0.03426791277258567, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.03426791277258567, 0.03426791277258567, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.021806853582554516, 0.021806853582554516, 0.024922118380062305, 0.5981308411214953, 0.6947040498442367, 0.8317757009345794, 0.8847352024922118, 0.8691588785046729, 0.8099688473520249, 0.6074766355140186, 0.32710280373831774, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.028037383177570093, 0.024922118380062305, 0.021806853582554516, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.009345794392523364, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.003115264797507788, 0.006230529595015576, 0.003115264797507788, 0.6510903426791277, 0.003115264797507788, 0.006230529595015576, 0.006230529595015576, 0.006230529595015576, 0.040498442367601244, 0.028037383177570093, 0.8660436137071651, 0.09345794392523364, 0.6822429906542056, 0.7476635514018691, 0.7975077881619937, 0.8566978193146417, 0.9283489096573209, 0.8878504672897196, 0.8130841121495327, 0.7663551401869159, 0.7102803738317757, 0.6386292834890965, 0.012461059190031152, 0.009345794392523364, 0.012461059190031152, 0.012461059190031152, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.012461059190031152, 0.012461059190031152, 0.009345794392523364, 0.009345794392523364, 0.006230529595015576, 0.006230529595015576, 0.006230529595015576, 0.009345794392523364, 0.01557632398753894, 0.9252336448598131, 0.03115264797507788, 0.040498442367601244, 0.04984423676012461, 0.06542056074766354, 0.08722741433021806, 0.09657320872274143, 0.7632398753894081, 0.9190031152647975, 0.9283489096573209, 0.940809968847352, 0.9190031152647975, 0.9003115264797508, 0.7289719626168224, 0.16510903426791276, 0.2523364485981308, 0.27102803738317754, 0.2897196261682243, 0.29906542056074764, 0.3177570093457944, 0.3177570093457944, 0.32710280373831774, 0.3364485981308411, 0.3582554517133956, 0.3894080996884735, 0.43302180685358255, 0.46105919003115264, 0.5514018691588785, 0.632398753894081, 0.7663551401869159, 0.8068535825545171, 0.822429906542056, 0.8442367601246106, 0.8442367601246106, 0.8504672897196262, 0.9003115264797508], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX1.gap.json b/pfam_gap_rates/COX1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eff0406bbedd3cedf2212bb6a0c95e447d4a5250
--- /dev/null
+++ b/pfam_gap_rates/COX1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COX17.gap.json b/pfam_gap_rates/COX17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d996a33ebbfbaab51f6c88490c6042e1aad16a46
--- /dev/null
+++ b/pfam_gap_rates/COX17.gap.json
@@ -0,0 +1 @@
+{"family": "COX17", "n_seqs": 264, "length": 50, "gap_rates": [0.7765151515151515, 0.10227272727272728, 0.07575757575757576, 0.07575757575757576, 0.06439393939393939, 0.06060606060606061, 0.06060606060606061, 0.056818181818181816, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.011363636363636364, 0.015151515151515152, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.6136363636363636, 0.06060606060606061, 0.08712121212121213, 0.6287878787878788, 0.7575757575757576, 0.7196969696969697, 0.01893939393939394, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.01893939393939394, 0.01893939393939394, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.026515151515151516, 0.026515151515151516, 0.030303030303030304, 0.03409090909090909, 0.056818181818181816, 0.0946969696969697, 0.0946969696969697, 0.10606060606060606, 0.22348484848484848], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX4_pro_2.gap.json b/pfam_gap_rates/COX4_pro_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76cbd152a6bdd145baf1957309b67558eff424e0
--- /dev/null
+++ b/pfam_gap_rates/COX4_pro_2.gap.json
@@ -0,0 +1 @@
+{"family": "COX4_pro_2", "n_seqs": 129, "length": 46, "gap_rates": [0.5271317829457365, 0.5038759689922481, 0.46511627906976744, 0.3798449612403101, 0.8062015503875969, 0.7984496124031008, 0.7751937984496124, 0.7674418604651163, 0.7054263565891473, 0.689922480620155, 0.21705426356589147, 0.13178294573643412, 0.10852713178294573, 0.10077519379844961, 0.06201550387596899, 0.046511627906976744, 0.046511627906976744, 0.031007751937984496, 0.023255813953488372, 0.023255813953488372, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.015503875968992248, 0.05426356589147287, 0.07751937984496124, 0.11627906976744186, 0.5581395348837209], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CP12.gap.json b/pfam_gap_rates/CP12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f28c9c18da2dfc04dc8ba23dfa33d562853964a
--- /dev/null
+++ b/pfam_gap_rates/CP12.gap.json
@@ -0,0 +1 @@
+{"family": "CP12", "n_seqs": 243, "length": 73, "gap_rates": [0.32098765432098764, 0.2716049382716049, 0.2222222222222222, 0.18106995884773663, 0.1646090534979424, 0.1522633744855967, 0.14814814814814814, 0.1440329218106996, 0.13991769547325103, 0.13991769547325103, 0.13991769547325103, 0.13991769547325103, 0.13580246913580246, 0.13580246913580246, 0.13580246913580246, 0.13580246913580246, 0.13991769547325103, 0.43209876543209874, 0.20987654320987653, 0.19753086419753085, 0.13580246913580246, 0.13580246913580246, 0.13580246913580246, 0.13580246913580246, 0.13580246913580246, 0.13168724279835392, 0.13168724279835392, 0.13168724279835392, 0.13168724279835392, 0.13168724279835392, 0.13168724279835392, 0.13168724279835392, 0.13580246913580246, 0.13580246913580246, 0.13580246913580246, 0.13168724279835392, 0.12757201646090535, 0.13991769547325103, 0.13991769547325103, 0.14814814814814814, 0.13991769547325103, 0.14814814814814814, 0.1646090534979424, 0.16872427983539096, 0.1646090534979424, 0.9423868312757202, 0.8436213991769548, 0.3786008230452675, 0.9012345679012346, 0.18518518518518517, 0.1522633744855967, 0.12345679012345678, 0.08641975308641975, 0.08641975308641975, 0.08641975308641975, 0.08641975308641975, 0.09053497942386832, 0.09053497942386832, 0.09053497942386832, 0.09053497942386832, 0.09053497942386832, 0.09053497942386832, 0.09053497942386832, 0.09053497942386832, 0.09053497942386832, 0.09876543209876543, 0.102880658436214, 0.102880658436214, 0.102880658436214, 0.10699588477366255, 0.1111111111111111, 0.11934156378600823, 0.13991769547325103], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CP2.gap.json b/pfam_gap_rates/CP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2935471f8b2ba0c589ef2691836734a597eff3f
--- /dev/null
+++ b/pfam_gap_rates/CP2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CPSase_sm_chain.gap.json b/pfam_gap_rates/CPSase_sm_chain.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9b142e941beb7111d65f8095164a6927e38009d
--- /dev/null
+++ b/pfam_gap_rates/CPSase_sm_chain.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CPT.gap.json b/pfam_gap_rates/CPT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1a32a80da0c4ff370be4c917a536f09fb8b5a3a
--- /dev/null
+++ b/pfam_gap_rates/CPT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CRAL_TRIO_2.gap.json b/pfam_gap_rates/CRAL_TRIO_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ffac1c04427eb8ff412607ece1a16c5d08c753b
--- /dev/null
+++ b/pfam_gap_rates/CRAL_TRIO_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CRT10.gap.json b/pfam_gap_rates/CRT10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f9dcac259de534b869d02a17ff54f368becff3d
--- /dev/null
+++ b/pfam_gap_rates/CRT10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CWC25.gap.json b/pfam_gap_rates/CWC25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca6889f628051cc6262691a02ac74018698b2ce3
--- /dev/null
+++ b/pfam_gap_rates/CWC25.gap.json
@@ -0,0 +1 @@
+{"family": "CWC25", "n_seqs": 294, "length": 117, "gap_rates": [0.7278911564625851, 0.2755102040816326, 0.10884353741496598, 0.0782312925170068, 0.05102040816326531, 0.04081632653061224, 0.04081632653061224, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.030612244897959183, 0.047619047619047616, 0.9285714285714286, 0.9115646258503401, 0.46938775510204084, 0.46598639455782315, 0.9047619047619048, 0.9489795918367347, 0.9455782312925171, 0.5612244897959183, 0.09183673469387756, 0.1292517006802721, 0.11224489795918367, 0.05442176870748299, 0.023809523809523808, 0.03741496598639456, 0.2857142857142857, 0.282312925170068, 0.02040816326530612, 0.023809523809523808, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.42857142857142855, 0.061224489795918366, 0.07142857142857142, 0.04081632653061224, 0.03741496598639456, 0.023809523809523808, 0.023809523809523808, 0.02040816326530612, 0.05782312925170068, 0.034013605442176874, 0.03741496598639456, 0.06462585034013606, 0.0782312925170068, 0.06462585034013606, 0.09523809523809523, 0.03741496598639456, 0.5170068027210885, 0.6156462585034014, 0.7414965986394558, 0.8163265306122449, 0.8537414965986394, 0.8945578231292517, 0.9251700680272109, 0.9421768707482994, 0.9489795918367347, 0.9421768707482994, 0.9319727891156463, 0.9251700680272109, 0.8673469387755102, 0.8435374149659864, 0.7891156462585034, 0.6768707482993197, 0.5816326530612245, 0.47278911564625853, 0.1326530612244898, 0.272108843537415, 0.17687074829931973, 0.13945578231292516, 0.09523809523809523, 0.0782312925170068, 0.05102040816326531, 0.04421768707482993, 0.03741496598639456, 0.04081632653061224, 0.9421768707482994, 0.027210884353741496, 0.023809523809523808, 0.20748299319727892, 0.03741496598639456, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.017006802721088437, 0.013605442176870748, 0.034013605442176874, 0.034013605442176874, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.013605442176870748, 0.02040816326530612, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.027210884353741496, 0.034013605442176874, 0.03741496598639456, 0.047619047619047616, 0.05102040816326531, 0.05782312925170068, 0.08503401360544217, 0.09183673469387756, 0.13945578231292516, 0.20068027210884354], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CYSTM.gap.json b/pfam_gap_rates/CYSTM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab78c4cc4295dd2e95b2df308632857352a81aec
--- /dev/null
+++ b/pfam_gap_rates/CYSTM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cache_3-Cache_2.gap.json b/pfam_gap_rates/Cache_3-Cache_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8f06a7e244b3410a199d628c37babbf38c81fa8
--- /dev/null
+++ b/pfam_gap_rates/Cache_3-Cache_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cadherin_2.gap.json b/pfam_gap_rates/Cadherin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7d25e9652de2040ba7b192948ac1cdcff83bbe5
--- /dev/null
+++ b/pfam_gap_rates/Cadherin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Cadherin_2", "n_seqs": 969, "length": 83, "gap_rates": [0.5975232198142415, 0.19917440660474717, 0.11145510835913312, 0.09081527347781218, 0.08565531475748193, 0.07533539731682147, 0.07223942208462332, 0.07120743034055728, 0.06914344685242518, 0.0608875128998968, 0.05675954592363261, 0.05572755417956656, 0.054695562435500514, 0.05263157894736842, 0.04953560371517028, 0.048503611971104234, 0.04643962848297214, 0.04643962848297214, 0.04643962848297214, 0.047471620227038186, 0.048503611971104234, 0.04643962848297214, 0.04643962848297214, 0.054695562435500514, 0.054695562435500514, 0.048503611971104234, 0.04540763673890609, 0.05263157894736842, 0.07533539731682147, 0.0784313725490196, 0.07430340557275542, 0.05263157894736842, 0.04953560371517028, 0.05159958720330237, 0.04953560371517028, 0.03715170278637771, 0.0392156862745098, 0.054695562435500514, 0.05159958720330237, 0.12074303405572756, 0.1042311661506708, 0.029927760577915376, 0.023735810113519093, 0.023735810113519093, 0.018575851393188854, 0.015479876160990712, 0.015479876160990712, 0.016511867905056758, 0.018575851393188854, 0.0196078431372549, 0.023735810113519093, 0.02476780185758514, 0.018575851393188854, 0.017543859649122806, 0.016511867905056758, 0.017543859649122806, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.02063983488132095, 0.021671826625386997, 0.022703818369453045, 0.02476780185758514, 0.04024767801857585, 0.05675954592363261, 0.06191950464396285, 0.06398348813209494, 0.06707946336429309, 0.09081527347781218, 0.09803921568627451, 0.1001031991744066, 0.10113519091847266, 0.10319917440660474, 0.15376676986584106, 0.22703818369453044, 0.32094943240454077, 0.6016511867905057], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Caleosin.gap.json b/pfam_gap_rates/Caleosin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e340f3439d25c06ed4fd58d3206ef08653c007c
--- /dev/null
+++ b/pfam_gap_rates/Caleosin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Calreticulin.gap.json b/pfam_gap_rates/Calreticulin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f919c73ce46872bb7f9ff5b581ad0cb45d2c9fc
--- /dev/null
+++ b/pfam_gap_rates/Calreticulin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Candida_ALS.gap.json b/pfam_gap_rates/Candida_ALS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c5cefc9bc941f6f6321c6efb3858afb4e5b3423
--- /dev/null
+++ b/pfam_gap_rates/Candida_ALS.gap.json
@@ -0,0 +1 @@
+{"family": "Candida_ALS", "n_seqs": 570, "length": 34, "gap_rates": [0.17017543859649123, 0.05789473684210526, 0.04736842105263158, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.03333333333333333, 0.012280701754385965, 0.007017543859649123, 0.008771929824561403, 0.012280701754385965, 0.0035087719298245615, 0.0, 0.0, 0.0017543859649122807, 0.0017543859649122807, 0.0, 0.0, 0.8807017543859649, 0.6807017543859649, 0.010526315789473684, 0.010526315789473684, 0.012280701754385965, 0.015789473684210527, 0.008771929824561403, 0.0035087719298245615, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.007017543859649123, 0.01929824561403509, 0.02982456140350877, 0.04035087719298246], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Carn_acyltransf.gap.json b/pfam_gap_rates/Carn_acyltransf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c30f7a59c18884c4d8c819d7eaa1066eb192a0f
--- /dev/null
+++ b/pfam_gap_rates/Carn_acyltransf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Caroten_synth.gap.json b/pfam_gap_rates/Caroten_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e548526a95846daef618668223c3190f2647d9f
--- /dev/null
+++ b/pfam_gap_rates/Caroten_synth.gap.json
@@ -0,0 +1 @@
+{"family": "Caroten_synth", "n_seqs": 230, "length": 252, "gap_rates": [0.8, 0.691304347826087, 0.6, 0.5043478260869565, 0.4391304347826087, 0.3695652173913043, 0.24782608695652175, 0.20434782608695654, 0.1782608695652174, 0.14782608695652175, 0.13478260869565217, 0.10434782608695652, 0.1, 0.08695652173913043, 0.09130434782608696, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.8347826086956521, 0.8695652173913043, 0.8521739130434782, 0.8260869565217391, 0.06956521739130435, 0.04782608695652174, 0.05652173913043478, 0.05217391304347826, 0.27391304347826084, 0.06956521739130435, 0.043478260869565216, 0.0391304347826087, 0.034782608695652174, 0.030434782608695653, 0.030434782608695653, 0.043478260869565216, 0.030434782608695653, 0.034782608695652174, 0.030434782608695653, 0.02608695652173913, 0.02608695652173913, 0.0391304347826087, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.02608695652173913, 0.030434782608695653, 0.030434782608695653, 0.021739130434782608, 0.030434782608695653, 0.043478260869565216, 0.0391304347826087, 0.030434782608695653, 0.030434782608695653, 0.030434782608695653, 0.034782608695652174, 0.0391304347826087, 0.9043478260869565, 0.030434782608695653, 0.021739130434782608, 0.030434782608695653, 0.034782608695652174, 0.017391304347826087, 0.017391304347826087, 0.013043478260869565, 0.021739130434782608, 0.017391304347826087, 0.6478260869565218, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.013043478260869565, 0.013043478260869565, 0.013043478260869565, 0.008695652173913044, 0.017391304347826087, 0.013043478260869565, 0.013043478260869565, 0.008695652173913044, 0.008695652173913044, 0.013043478260869565, 0.17391304347826086, 0.1956521739130435, 0.4, 0.391304347826087, 0.8652173913043478, 0.9304347826086956, 0.9043478260869565, 0.8521739130434782, 0.3652173913043478, 0.30869565217391304, 0.15217391304347827, 0.11304347826086956, 0.09565217391304348, 0.11739130434782609, 0.05217391304347826, 0.6478260869565218, 0.6695652173913044, 0.8826086956521739, 0.9173913043478261, 0.9347826086956522, 0.9434782608695652, 0.9478260869565217, 0.9478260869565217, 0.9391304347826087, 0.9217391304347826, 0.8956521739130435, 0.8521739130434782, 0.6521739130434783, 0.6, 0.017391304347826087, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.008695652173913044, 0.7391304347826086, 0.9173913043478261, 0.9260869565217391, 0.9260869565217391, 0.9173913043478261, 0.5130434782608696, 0.004347826086956522, 0.0, 0.0, 0.0, 0.9173913043478261, 0.8652173913043478, 0.021739130434782608, 0.017391304347826087, 0.017391304347826087, 0.1565217391304348, 0.8652173913043478, 0.908695652173913, 0.908695652173913, 0.8347826086956521, 0.14782608695652175, 0.1391304347826087, 0.14347826086956522, 0.017391304347826087, 0.0, 0.004347826086956522, 0.004347826086956522, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008695652173913044, 0.0782608695652174, 0.08260869565217391, 0.0782608695652174, 0.05217391304347826, 0.030434782608695653, 0.06521739130434782, 0.0782608695652174, 0.8869565217391304, 0.9478260869565217, 0.8304347826086956, 0.18695652173913044, 0.20869565217391303, 0.20869565217391303, 0.21739130434782608, 0.1956521739130435, 0.2, 0.1782608695652174, 0.16521739130434782, 0.20434782608695654, 0.8782608695652174, 0.9478260869565217, 0.9173913043478261, 0.8347826086956521, 0.27391304347826084, 0.16956521739130434, 0.11304347826086956, 0.11304347826086956, 0.10869565217391304, 0.12608695652173912, 0.12608695652173912, 0.13043478260869565, 0.13478260869565217, 0.14347826086956522, 0.14782608695652175, 0.1565217391304348, 0.16956521739130434, 0.19130434782608696, 0.2, 0.2217391304347826, 0.23478260869565218, 0.2565217391304348, 0.30434782608695654, 0.3347826086956522, 0.3391304347826087, 0.3826086956521739, 0.9478260869565217, 0.8739130434782608, 0.39565217391304347, 0.4, 0.41304347826086957, 0.41304347826086957, 0.41739130434782606, 0.4217391304347826, 0.4217391304347826, 0.43043478260869567, 0.43478260869565216, 0.4608695652173913, 0.47391304347826085, 0.5260869565217391, 0.5695652173913044, 0.6260869565217392, 0.7304347826086957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cas_Cmr5.gap.json b/pfam_gap_rates/Cas_Cmr5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ec1a3bb68d8b4210a4fe892bc41c96275d884b7
--- /dev/null
+++ b/pfam_gap_rates/Cas_Cmr5.gap.json
@@ -0,0 +1 @@
+{"family": "Cas_Cmr5", "n_seqs": 113, "length": 163, "gap_rates": [0.5309734513274337, 0.3185840707964602, 0.24778761061946902, 0.22123893805309736, 0.20353982300884957, 0.18584070796460178, 0.18584070796460178, 0.168141592920354, 0.12389380530973451, 0.10619469026548672, 0.10619469026548672, 0.09734513274336283, 0.09734513274336283, 0.07964601769911504, 0.07964601769911504, 0.09734513274336283, 0.13274336283185842, 0.21238938053097345, 0.46017699115044247, 0.4690265486725664, 0.8761061946902655, 0.911504424778761, 0.9469026548672567, 0.9469026548672567, 0.9469026548672567, 0.9469026548672567, 0.9292035398230089, 0.8849557522123894, 0.7610619469026548, 0.1415929203539823, 0.09734513274336283, 0.08849557522123894, 0.07079646017699115, 0.061946902654867256, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.017699115044247787, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.17699115044247787, 0.6814159292035398, 0.7522123893805309, 0.7964601769911505, 0.831858407079646, 0.8672566371681416, 0.8938053097345132, 0.9203539823008849, 0.9203539823008849, 0.9292035398230089, 0.9380530973451328, 0.9380530973451328, 0.9469026548672567, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.9203539823008849, 0.9203539823008849, 0.911504424778761, 0.8849557522123894, 0.8584070796460177, 0.8053097345132744, 0.7699115044247787, 0.7256637168141593, 0.6637168141592921, 0.504424778761062, 0.504424778761062, 0.39823008849557523, 0.24778761061946902, 0.09734513274336283, 0.07964601769911504, 0.04424778761061947, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.02654867256637168, 0.02654867256637168, 0.035398230088495575, 0.02654867256637168, 0.02654867256637168, 0.035398230088495575, 0.035398230088495575, 0.04424778761061947, 0.04424778761061947, 0.8053097345132744, 0.8849557522123894, 0.911504424778761, 0.9469026548672567, 0.8938053097345132, 0.8584070796460177, 0.7433628318584071, 0.6460176991150443, 0.5663716814159292, 0.46017699115044247, 0.3805309734513274, 0.2920353982300885, 0.22123893805309736, 0.19469026548672566, 0.1592920353982301, 0.10619469026548672, 0.08849557522123894, 0.08849557522123894, 0.061946902654867256, 0.061946902654867256, 0.07079646017699115, 0.061946902654867256, 0.07964601769911504, 0.07079646017699115, 0.07079646017699115, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.9469026548672567, 0.10619469026548672, 0.10619469026548672, 0.07964601769911504, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.10619469026548672, 0.10619469026548672, 0.11504424778761062, 0.1415929203539823, 0.1592920353982301, 0.8230088495575221], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cation_efflux.gap.json b/pfam_gap_rates/Cation_efflux.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71533f8b6ae0dbe53c29026c341d7d59a8492d05
--- /dev/null
+++ b/pfam_gap_rates/Cation_efflux.gap.json
@@ -0,0 +1 @@
+{"family": "Cation_efflux", "n_seqs": 5000, "length": 289, "gap_rates": [0.7952, 0.4286, 0.2446, 0.1476, 0.1096, 0.0988, 0.09, 0.0862, 0.0832, 0.0788, 0.074, 0.0672, 0.0652, 0.0638, 0.0628, 0.0626, 0.0614, 0.06, 0.06, 0.0588, 0.0578, 0.0576, 0.0566, 0.0566, 0.056, 0.055, 0.0522, 0.0502, 0.0504, 0.0504, 0.0504, 0.0502, 0.05, 0.0486, 0.0474, 0.0472, 0.0468, 0.048, 0.0476, 0.0464, 0.0476, 0.047, 0.0464, 0.0456, 0.045, 0.0444, 0.0442, 0.0508, 0.0454, 0.0646, 0.0634, 0.8978, 0.066, 0.0548, 0.0622, 0.1092, 0.0984, 0.1076, 0.1062, 0.1054, 0.1046, 0.1066, 0.1044, 0.0982, 0.0848, 0.0746, 0.07, 0.0622, 0.058, 0.0572, 0.0418, 0.0406, 0.0408, 0.0386, 0.037, 0.035, 0.034, 0.9434, 0.0332, 0.0318, 0.0324, 0.032, 0.0316, 0.0318, 0.0314, 0.032, 0.0318, 0.0316, 0.0316, 0.0314, 0.0314, 0.0314, 0.036, 0.0352, 0.0366, 0.036, 0.8568, 0.9052, 0.9388, 0.9444, 0.9488, 0.9476, 0.9414, 0.9324, 0.8824, 0.832, 0.739, 0.3302, 0.051, 0.0422, 0.0406, 0.0388, 0.0342, 0.0352, 0.0348, 0.0354, 0.0356, 0.035, 0.0336, 0.0342, 0.0338, 0.0344, 0.0334, 0.0338, 0.033, 0.0336, 0.0336, 0.033, 0.0336, 0.0328, 0.0328, 0.0354, 0.0348, 0.035, 0.0354, 0.0358, 0.035, 0.0404, 0.0502, 0.2044, 0.2168, 0.2278, 0.1978, 0.718, 0.7238, 0.728, 0.7424, 0.7504, 0.759, 0.7972, 0.8354, 0.8438, 0.8508, 0.8622, 0.8692, 0.8728, 0.8796, 0.887, 0.8912, 0.895, 0.8976, 0.9004, 0.9038, 0.9078, 0.9118, 0.9152, 0.918, 0.92, 0.9218, 0.9242, 0.926, 0.9294, 0.9322, 0.935, 0.9378, 0.941, 0.9432, 0.946, 0.9478, 0.9492, 0.9484, 0.947, 0.9446, 0.9416, 0.9396, 0.9362, 0.9336, 0.9314, 0.9282, 0.925, 0.923, 0.9206, 0.9192, 0.9158, 0.9128, 0.9098, 0.9056, 0.9026, 0.8988, 0.897, 0.8928, 0.8888, 0.8848, 0.875, 0.8704, 0.8662, 0.8588, 0.8472, 0.8398, 0.806, 0.7658, 0.7562, 0.7452, 0.7402, 0.7262, 0.7224, 0.715, 0.0356, 0.0388, 0.0382, 0.038, 0.0376, 0.0368, 0.0366, 0.0372, 0.0366, 0.0364, 0.036, 0.0972, 0.0964, 0.0954, 0.0376, 0.0362, 0.0366, 0.0372, 0.0376, 0.0374, 0.0382, 0.0378, 0.038, 0.0376, 0.0378, 0.038, 0.038, 0.0402, 0.0398, 0.0398, 0.0398, 0.0536, 0.5308, 0.493, 0.5216, 0.4982, 0.417, 0.9214, 0.9484, 0.9314, 0.8188, 0.3202, 0.1838, 0.045, 0.0442, 0.0442, 0.0448, 0.0446, 0.045, 0.0452, 0.0458, 0.0458, 0.046, 0.047, 0.0474, 0.048, 0.0488, 0.0504, 0.0514, 0.0524, 0.0568, 0.066, 0.078, 0.0824, 0.102, 0.1192, 0.1334, 0.1598, 0.201, 0.2386, 0.2684, 0.4788], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CbbQ_C.gap.json b/pfam_gap_rates/CbbQ_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ab2a00a102161db78fb0964cfb6373b1ce7c6bf
--- /dev/null
+++ b/pfam_gap_rates/CbbQ_C.gap.json
@@ -0,0 +1 @@
+{"family": "CbbQ_C", "n_seqs": 375, "length": 95, "gap_rates": [0.2, 0.19466666666666665, 0.18133333333333335, 0.168, 0.168, 0.16533333333333333, 0.16533333333333333, 0.16533333333333333, 0.14933333333333335, 0.8693333333333333, 0.14133333333333334, 0.136, 0.10666666666666667, 0.016, 0.010666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008, 0.010666666666666666, 0.008, 0.008, 0.8053333333333333, 0.005333333333333333, 0.92, 0.9386666666666666, 0.9466666666666667, 0.9466666666666667, 0.9333333333333333, 0.8826666666666667, 0.010666666666666666, 0.008, 0.008, 0.008, 0.0026666666666666666, 0.0026666666666666666, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.005333333333333333, 0.021333333333333333, 0.029333333333333333, 0.032, 0.042666666666666665, 0.04, 0.04, 0.042666666666666665, 0.04533333333333334, 0.056, 0.058666666666666666, 0.058666666666666666, 0.064, 0.072, 0.09333333333333334, 0.12533333333333332, 0.176, 0.21333333333333335, 0.232, 0.24533333333333332, 0.248, 0.248, 0.92, 0.9146666666666666, 0.256, 0.256, 0.256, 0.2613333333333333, 0.2613333333333333, 0.2693333333333333, 0.26666666666666666, 0.2693333333333333, 0.27466666666666667, 0.27466666666666667, 0.27466666666666667, 0.27466666666666667, 0.2853333333333333, 0.336, 0.5173333333333333, 0.9466666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CbiA.gap.json b/pfam_gap_rates/CbiA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca1ba02ca2afff9ca0f77fe383cdbc78b9b032ab
--- /dev/null
+++ b/pfam_gap_rates/CbiA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CbiG_C.gap.json b/pfam_gap_rates/CbiG_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10ce50a7d8ad79dd335a453887c45cc071227ec0
--- /dev/null
+++ b/pfam_gap_rates/CbiG_C.gap.json
@@ -0,0 +1 @@
+{"family": "CbiG_C", "n_seqs": 679, "length": 133, "gap_rates": [0.32106038291605304, 0.047128129602356406, 0.027982326951399118, 0.025036818851251842, 0.023564064801178203, 0.023564064801178203, 0.023564064801178203, 0.023564064801178203, 0.023564064801178203, 0.023564064801178203, 0.023564064801178203, 0.025036818851251842, 0.026509572901325478, 0.022091310751104567, 0.022091310751104567, 0.022091310751104567, 0.023564064801178203, 0.023564064801178203, 0.025036818851251842, 0.025036818851251842, 0.022091310751104567, 0.023564064801178203, 0.023564064801178203, 0.027982326951399118, 0.029455081001472753, 0.045655375552282766, 0.050073637702503684, 0.05891016200294551, 0.0780559646539028, 0.09278350515463918, 0.07069219440353461, 0.05891016200294551, 0.041237113402061855, 0.041237113402061855, 0.027982326951399118, 0.01914580265095729, 0.01914580265095729, 0.017673048600883652, 0.016200294550810016, 0.016200294550810016, 0.016200294550810016, 0.01914580265095729, 0.01914580265095729, 0.020618556701030927, 0.029455081001472753, 0.029455081001472753, 0.029455081001472753, 0.025036818851251842, 0.01914580265095729, 0.01914580265095729, 0.020618556701030927, 0.022091310751104567, 0.022091310751104567, 0.01914580265095729, 0.01914580265095729, 0.016200294550810016, 0.022091310751104567, 0.020618556701030927, 0.017673048600883652, 0.017673048600883652, 0.016200294550810016, 0.013254786450662739, 0.013254786450662739, 0.014727540500736377, 0.014727540500736377, 0.013254786450662739, 0.013254786450662739, 0.013254786450662739, 0.013254786450662739, 0.013254786450662739, 0.016200294550810016, 0.016200294550810016, 0.6406480117820325, 0.47717231222385864, 0.011782032400589101, 0.20176730486008837, 0.027982326951399118, 0.011782032400589101, 0.010309278350515464, 0.008836524300441826, 0.020618556701030927, 0.016200294550810016, 0.025036818851251842, 0.016200294550810016, 0.008836524300441826, 0.005891016200294551, 0.005891016200294551, 0.007363770250368188, 0.007363770250368188, 0.008836524300441826, 0.008836524300441826, 0.008836524300441826, 0.008836524300441826, 0.008836524300441826, 0.008836524300441826, 0.008836524300441826, 0.008836524300441826, 0.008836524300441826, 0.008836524300441826, 0.010309278350515464, 0.2533136966126657, 0.8483063328424153, 0.8924889543446245, 0.9410898379970545, 0.9455081001472754, 0.914580265095729, 0.8733431516936672, 0.6111929307805597, 0.18556701030927836, 0.017673048600883652, 0.011782032400589101, 0.011782032400589101, 0.011782032400589101, 0.011782032400589101, 0.011782032400589101, 0.014727540500736377, 0.022091310751104567, 0.022091310751104567, 0.013254786450662739, 0.7893961708394698, 0.8394698085419735, 0.9248895434462445, 0.8600883652430045, 0.8350515463917526, 0.7643593519882179, 0.014727540500736377, 0.014727540500736377, 0.016200294550810016, 0.016200294550810016, 0.016200294550810016, 0.016200294550810016, 0.033873343151693665, 0.2960235640648012], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CbiG_mid.gap.json b/pfam_gap_rates/CbiG_mid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..035e1e9a361ab29d4613fd1f9ef049246c71fcbf
--- /dev/null
+++ b/pfam_gap_rates/CbiG_mid.gap.json
@@ -0,0 +1 @@
+{"family": "CbiG_mid", "n_seqs": 265, "length": 110, "gap_rates": [0.5207547169811321, 0.01509433962264151, 0.007547169811320755, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0, 0.0, 0.0, 0.0, 0.8188679245283019, 0.13584905660377358, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.08679245283018867, 0.16226415094339622, 0.15471698113207547, 0.13584905660377358, 0.11320754716981132, 0.10566037735849057, 0.11320754716981132, 0.09056603773584905, 0.08679245283018867, 0.08679245283018867, 0.09433962264150944, 0.09433962264150944, 0.12452830188679245, 0.13962264150943396, 0.12452830188679245, 0.1169811320754717, 0.12452830188679245, 0.12452830188679245, 0.1320754716981132, 0.12830188679245283, 0.13962264150943396, 0.15849056603773584, 0.18490566037735848, 0.6150943396226415, 0.12830188679245283, 0.3132075471698113, 0.38113207547169814, 0.4641509433962264, 0.7056603773584905, 0.8452830188679246, 0.8754716981132076, 0.9056603773584906, 0.9283018867924528, 0.9358490566037736, 0.9358490566037736, 0.9320754716981132, 0.9169811320754717, 0.8943396226415095, 0.8566037735849057, 0.8075471698113208, 0.4830188679245283, 0.41509433962264153, 0.3584905660377358, 0.2981132075471698, 0.10566037735849057, 0.10566037735849057, 0.10566037735849057, 0.10566037735849057, 0.10566037735849057, 0.10566037735849057, 0.10943396226415095, 0.1169811320754717, 0.12452830188679245, 0.13962264150943396, 0.17358490566037735, 0.20754716981132076, 0.19622641509433963, 0.21132075471698114, 0.25660377358490566, 0.2490566037735849, 0.2641509433962264, 0.33584905660377357, 0.6452830188679245, 0.7584905660377359, 0.879245283018868, 0.6943396226415094, 0.6113207547169811, 0.2528301886792453, 0.2528301886792453, 0.2528301886792453, 0.25660377358490566, 0.26037735849056604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CbiK.gap.json b/pfam_gap_rates/CbiK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfd421172715d8982e5e91e7c96b587ee1edbb93
--- /dev/null
+++ b/pfam_gap_rates/CbiK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CbiQ.gap.json b/pfam_gap_rates/CbiQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66c37f5cf046bf8aded338807446e899e89b80d7
--- /dev/null
+++ b/pfam_gap_rates/CbiQ.gap.json
@@ -0,0 +1 @@
+{"family": "CbiQ", "n_seqs": 2901, "length": 253, "gap_rates": [0.7173388486728715, 0.4691485694588073, 0.41744226128921064, 0.3578076525336091, 0.3271285763529817, 0.290934160634264, 0.2543950361944157, 0.23371251292657705, 0.2178559117545674, 0.20889348500517063, 0.19958634953464321, 0.1954498448810755, 0.17993795243019647, 0.16511547742157875, 0.15408479834539815, 0.14408824543260945, 0.1382281971733885, 0.1351258186832127, 0.13271285763529816, 0.12926577042399173, 0.12650810065494658, 0.12409513960703206, 0.1244398483281627, 0.12237159600137884, 0.12099276111685625, 0.11961392623233368, 0.11789038262668046, 0.11409858669424336, 0.1120303343674595, 0.11030679076180627, 0.10858324715615306, 0.10754912099276112, 0.28369527749052054, 0.2278524646673561, 0.1854532919682868, 0.15477421578765943, 0.12237159600137884, 0.1020337814546708, 0.08204067562909341, 0.07169941399517407, 0.06790761806273699, 0.06480523957256118, 0.06308169596690796, 0.06170286108238538, 0.06135815236125474, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CbiZ.gap.json b/pfam_gap_rates/CbiZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..192e0b5f8896c8d0d08d004e5f1552ba17dd31b4
--- /dev/null
+++ b/pfam_gap_rates/CbiZ.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cbl_N2.gap.json b/pfam_gap_rates/Cbl_N2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ba7bc4b9c6635b481892ff46195ac991b873703
--- /dev/null
+++ b/pfam_gap_rates/Cbl_N2.gap.json
@@ -0,0 +1 @@
+{"family": "Cbl_N2", "n_seqs": 141, "length": 86, "gap_rates": [0.22695035460992907, 0.20567375886524822, 0.1773049645390071, 0.15602836879432624, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.11347517730496454, 0.10638297872340426, 0.10638297872340426, 0.09929078014184398, 0.09929078014184398, 0.09219858156028368, 0.05673758865248227, 0.02127659574468085, 0.02127659574468085, 0.9290780141843972, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.1276595744680851, 0.9361702127659575, 0.04964539007092199, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.05673758865248227, 0.04964539007092199, 0.04964539007092199, 0.05673758865248227, 0.07092198581560284, 0.09219858156028368, 0.09929078014184398, 0.09929078014184398, 0.10638297872340426, 0.10638297872340426, 0.11347517730496454, 0.1347517730496454, 0.14893617021276595, 0.14893617021276595, 0.16312056737588654, 0.1702127659574468, 0.20567375886524822, 0.2127659574468085, 0.2127659574468085, 0.2127659574468085, 0.24113475177304963], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CbtA.gap.json b/pfam_gap_rates/CbtA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9906fa8974dcf75635b80831fabb4907f06b8c4e
--- /dev/null
+++ b/pfam_gap_rates/CbtA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cdc6_C.gap.json b/pfam_gap_rates/Cdc6_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40326787fc01b67f3e8bc196996f4c1c77d95340
--- /dev/null
+++ b/pfam_gap_rates/Cdc6_C.gap.json
@@ -0,0 +1 @@
+{"family": "Cdc6_C", "n_seqs": 397, "length": 87, "gap_rates": [0.380352644836272, 0.2871536523929471, 0.23929471032745592, 0.2141057934508816, 0.20654911838790932, 0.20151133501259447, 0.1889168765743073, 0.17884130982367757, 0.16120906801007556, 0.9345088161209067, 0.4987405541561713, 0.16876574307304787, 0.12594458438287154, 0.11586901763224182, 0.10327455919395466, 0.08312342569269521, 0.06801007556675064, 0.017632241813602016, 0.015113350125944584, 0.015113350125944584, 0.015113350125944584, 0.010075566750629723, 0.010075566750629723, 0.010075566750629723, 0.010075566750629723, 0.010075566750629723, 0.010075566750629723, 0.010075566750629723, 0.010075566750629723, 0.010075566750629723, 0.007556675062972292, 0.005037783375314861, 0.017632241813602016, 0.9370277078085643, 0.015113350125944584, 0.015113350125944584, 0.9093198992443325, 0.007556675062972292, 0.0025188916876574307, 0.0025188916876574307, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0025188916876574307, 0.0025188916876574307, 0.0025188916876574307, 0.0025188916876574307, 0.005037783375314861, 0.005037783375314861, 0.005037783375314861, 0.007556675062972292, 0.020151133501259445, 0.020151133501259445, 0.022670025188916875, 0.022670025188916875, 0.49622166246851385, 0.4508816120906801, 0.45843828715365237, 0.4836272040302267, 0.35516372795969775, 0.2216624685138539, 0.1385390428211587, 0.1385390428211587, 0.13602015113350127, 0.13602015113350127, 0.13350125944584382, 0.1385390428211587, 0.1385390428211587, 0.15365239294710328, 0.16624685138539042, 0.181360201511335, 0.18639798488664988, 0.19899244332493704, 0.20654911838790932, 0.23929471032745592, 0.2594458438287154, 0.3148614609571788, 0.5138539042821159, 0.6876574307304786], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CdhD.gap.json b/pfam_gap_rates/CdhD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26d1a90668cbe11b4cc5ab553ab0409c5867f947
--- /dev/null
+++ b/pfam_gap_rates/CdhD.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/CesT.gap.json b/pfam_gap_rates/CesT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87393d8ad2221b49c2b09ce27f7157d9c5d21e1d
--- /dev/null
+++ b/pfam_gap_rates/CesT.gap.json
@@ -0,0 +1 @@
+{"family": "CesT", "n_seqs": 221, "length": 126, "gap_rates": [0.8461538461538461, 0.4751131221719457, 0.3212669683257919, 0.2986425339366516, 0.28054298642533937, 0.25339366515837103, 0.23529411764705882, 0.22171945701357465, 0.21266968325791855, 0.2081447963800905, 0.20361990950226244, 0.20361990950226244, 0.8959276018099548, 0.4434389140271493, 0.19909502262443438, 0.20361990950226244, 0.18552036199095023, 0.18099547511312217, 0.27149321266968324, 0.17647058823529413, 0.167420814479638, 0.167420814479638, 0.16289592760180996, 0.1583710407239819, 0.13574660633484162, 0.11312217194570136, 0.11312217194570136, 0.1085972850678733, 0.9366515837104072, 0.497737556561086, 0.2081447963800905, 0.12669683257918551, 0.09502262443438914, 0.08597285067873303, 0.07692307692307693, 0.058823529411764705, 0.05429864253393665, 0.049773755656108594, 0.05429864253393665, 0.04072398190045249, 0.03619909502262444, 0.03619909502262444, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.00904977375565611, 0.013574660633484163, 0.004524886877828055, 0.00904977375565611, 0.013574660633484163, 0.00904977375565611, 0.004524886877828055, 0.004524886877828055, 0.00904977375565611, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.04524886877828054, 0.04524886877828054, 0.09954751131221719, 0.167420814479638, 0.755656108597285, 0.8687782805429864, 0.6470588235294118, 0.02262443438914027, 0.013574660633484163, 0.013574660633484163, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.0, 0.05429864253393665, 0.07692307692307693, 0.05429864253393665, 0.004524886877828055, 0.0, 0.0, 0.004524886877828055, 0.0, 0.00904977375565611, 0.004524886877828055, 0.0, 0.0, 0.0, 0.0, 0.17647058823529413, 0.04524886877828054, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004524886877828055, 0.00904977375565611, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.01809954751131222, 0.01809954751131222, 0.09954751131221719, 0.9276018099547512, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.027149321266968326, 0.027149321266968326, 0.03619909502262444, 0.04524886877828054, 0.04524886877828054, 0.04524886877828054, 0.04524886877828054, 0.04524886877828054, 0.05429864253393665, 0.07692307692307693, 0.08597285067873303, 0.09049773755656108, 0.10407239819004525, 0.13574660633484162, 0.21266968325791855, 0.2669683257918552, 0.5746606334841629], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ChapFlgA.gap.json b/pfam_gap_rates/ChapFlgA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1ac85e25c58011a243c2cdd148feee8ff9782cc
--- /dev/null
+++ b/pfam_gap_rates/ChapFlgA.gap.json
@@ -0,0 +1 @@
+{"family": "ChapFlgA", "n_seqs": 640, "length": 213, "gap_rates": [0.8515625, 0.7671875, 0.7015625, 0.6609375, 0.634375, 0.6109375, 0.5984375, 0.5890625, 0.5796875, 0.571875, 0.5671875, 0.565625, 0.559375, 0.5484375, 0.55, 0.546875, 0.75, 0.934375, 0.8625, 0.70625, 0.528125, 0.5140625, 0.5, 0.490625, 0.4890625, 0.4953125, 0.4921875, 0.4859375, 0.4765625, 0.4765625, 0.4703125, 0.46875, 0.459375, 0.453125, 0.45, 0.44375, 0.4484375, 0.45625, 0.75, 0.43125, 0.43125, 0.4359375, 0.4328125, 0.425, 0.425, 0.4265625, 0.4265625, 0.43125, 0.9421875, 0.421875, 0.4203125, 0.4703125, 0.4578125, 0.409375, 0.3921875, 0.384375, 0.36875, 0.365625, 0.3640625, 0.3578125, 0.3546875, 0.35625, 0.3515625, 0.353125, 0.8703125, 0.9453125, 0.9125, 0.7953125, 0.4546875, 0.3703125, 0.3578125, 0.33125, 0.328125, 0.31875, 0.30625, 0.2984375, 0.2890625, 0.284375, 0.2703125, 0.2609375, 0.25, 0.234375, 0.2046875, 0.1546875, 0.103125, 0.090625, 0.078125, 0.0703125, 0.0625, 0.0625, 0.0609375, 0.0578125, 0.0546875, 0.0546875, 0.053125, 0.053125, 0.053125, 0.053125, 0.053125, 0.053125, 0.0546875, 0.0578125, 0.053125, 0.0546875, 0.053125, 0.053125, 0.0546875, 0.0546875, 0.05625, 0.059375, 0.059375, 0.109375, 0.0984375, 0.0890625, 0.1140625, 0.0796875, 0.940625, 0.0671875, 0.05625, 0.05, 0.05, 0.840625, 0.053125, 0.63125, 0.275, 0.05, 0.875, 0.828125, 0.0515625, 0.9296875, 0.0484375, 0.0484375, 0.05, 0.0484375, 0.046875, 0.046875, 0.046875, 0.046875, 0.0515625, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.0453125, 0.0453125, 0.05, 0.05625, 0.059375, 0.0578125, 0.0578125, 0.121875, 0.125, 0.1265625, 0.09375, 0.10625, 0.1125, 0.1140625, 0.11875, 0.125, 0.1265625, 0.13125, 0.1359375, 0.1390625, 0.1421875, 0.1421875, 0.1421875, 0.1421875, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.1453125, 0.1453125, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.14375, 0.1453125, 0.1453125, 0.1453125, 0.146875, 0.146875, 0.1484375, 0.2546875, 0.1515625, 0.20625, 0.153125, 0.1515625, 0.1515625, 0.1515625, 0.1515625, 0.1515625, 0.1515625, 0.1578125, 0.1578125, 0.159375, 0.1625, 0.1703125, 0.1859375, 0.2171875, 0.2859375, 0.4140625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CheD.gap.json b/pfam_gap_rates/CheD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ee4ac35db6a97b777c9ee7fc237d2001559f148
--- /dev/null
+++ b/pfam_gap_rates/CheD.gap.json
@@ -0,0 +1 @@
+{"family": "CheD", "n_seqs": 643, "length": 111, "gap_rates": [0.2363919129082426, 0.13063763608087092, 0.12597200622083982, 0.12130637636080871, 0.1181959564541213, 0.9471228615863142, 0.9206842923794712, 0.48989113530326595, 0.40746500777604977, 0.3094867807153966, 0.2208398133748056, 0.1368584758942457, 0.09175738724727839, 0.09797822706065319, 0.26283048211508553, 0.16951788491446346, 0.02332814930015552, 0.02021772939346812, 0.017107309486780714, 0.015552099533437015, 0.015552099533437015, 0.013996889580093312, 0.00933125972006221, 0.00933125972006221, 0.007776049766718507, 0.007776049766718507, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.01088646967340591, 0.01088646967340591, 0.012441679626749611, 0.007776049766718507, 0.007776049766718507, 0.017107309486780714, 0.012441679626749611, 0.004665629860031105, 0.004665629860031105, 0.004665629860031105, 0.004665629860031105, 0.004665629860031105, 0.004665629860031105, 0.004665629860031105, 0.004665629860031105, 0.004665629860031105, 0.004665629860031105, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.012441679626749611, 0.026438569206842923, 0.2939346811819596, 0.25972006220839816, 0.6671850699844479, 0.4758942457231726, 0.4152410575427683, 0.3468118195956454, 0.18195956454121306, 0.13841368584758942, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.007776049766718507, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.006220839813374806, 0.00933125972006221, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.007776049766718507, 0.00933125972006221, 0.015552099533437015, 0.01866251944012442, 0.01866251944012442, 0.01866251944012442, 0.02177293934681182, 0.02177293934681182, 0.02332814930015552, 0.05443234836702955, 0.09486780715396578, 0.17729393468118196, 0.5069984447900466], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ChlI.gap.json b/pfam_gap_rates/ChlI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e9ad81d9ff6b9379639fa677f6cc6e7aa646d84
--- /dev/null
+++ b/pfam_gap_rates/ChlI.gap.json
@@ -0,0 +1 @@
+{"family": "ChlI", "n_seqs": 3298, "length": 124, "gap_rates": [0.49757428744693755, 0.4808975136446331, 0.4787750151607035, 0.47665251667677383, 0.4739235900545785, 0.4724075197089145, 0.47180109157064887, 0.4693753790175864, 0.4687689508793208, 0.4678593086719224, 0.5027289266221953, 0.4651303820497271, 0.4645239539114615, 0.46270466949666467, 0.46179502728926625, 0.46179502728926625, 0.46149181322013344, 0.46149181322013344, 0.46179502728926625, 0.46058217101273496, 0.46058217101273496, 0.46027895694360216, 0.45997574287446935, 0.45967252880533654, 0.4566403881140085, 0.45482110369921164, 0.4481503941782899, 0.44633110976349305, 0.4423893268647665, 0.436931473620376, 0.42874469375379015, 0.4208611279563372, 0.4105518496058217, 0.4005457853244391, 0.31564584596725287, 0.9008489993935719, 0.21983020012128562, 0.20042449969678594, 0.19132807762280168, 0.18617343844754397, 0.1801091570648878, 0.18041237113402062, 0.17343844754396603, 0.16737416616130987, 0.16191631291691935, 0.15706488781079442, 0.156155245603396, 0.15312310491206793, 0.15160703456640387, 0.15191024863553668, 0.15191024863553668, 0.15160703456640387, 0.1564584596725288, 0.4490600363856883, 0.12249848392965433, 0.10673135233474833, 0.0936931473620376, 0.08429351121892056, 0.07580351728320193, 0.0506367495451789, 0.02304426925409339, 0.013038204972710734, 0.008489993935718617, 0.007883565797453002, 0.007580351728320194, 0.0072771376591873865, 0.007580351728320194, 0.007883565797453002, 0.007580351728320194, 0.00818677986658581, 0.01212856276531231, 0.010309278350515464, 0.010006064281382655, 0.010309278350515464, 0.010915706488781079, 0.010309278350515464, 0.009702850212249849, 0.010006064281382655, 0.010006064281382655, 0.010612492419648272, 0.6046088538508186, 0.5200121285627654, 0.009096422073984234, 0.007580351728320194, 0.007580351728320194, 0.0072771376591873865, 0.006973923590054579, 0.006973923590054579, 0.006973923590054579, 0.006973923590054579, 0.006973923590054579, 0.006973923590054579, 0.006973923590054579, 0.006973923590054579, 0.006973923590054579, 0.0072771376591873865, 0.0072771376591873865, 0.007883565797453002, 0.008489993935718617, 0.009096422073984234, 0.00939963614311704, 0.00939963614311704, 0.010006064281382655, 0.010612492419648272, 0.010915706488781079, 0.010915706488781079, 0.010915706488781079, 0.010915706488781079, 0.011218920557913887, 0.011218920557913887, 0.011218920557913887, 0.01212856276531231, 0.016676773802304427, 0.02031534263189812, 0.1409945421467556, 0.03547604608853851, 0.039721043056397815, 0.04002425712553062, 0.04244996967859309, 0.053972104305639784, 0.05942995755003032, 0.10460885385081868, 0.3120072771376592, 0.43541540327471195], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chlorophyllase2.gap.json b/pfam_gap_rates/Chlorophyllase2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09bf4b037f99c5268c40ac59f669a5ff3d32ee51
--- /dev/null
+++ b/pfam_gap_rates/Chlorophyllase2.gap.json
@@ -0,0 +1 @@
+{"family": "Chlorophyllase2", "n_seqs": 314, "length": 306, "gap_rates": [0.8694267515923567, 0.7802547770700637, 0.7484076433121019, 0.6496815286624203, 0.5445859872611465, 0.49044585987261147, 0.43312101910828027, 0.4012738853503185, 0.36942675159235666, 0.35668789808917195, 0.3375796178343949, 0.2515923566878981, 0.19745222929936307, 0.1464968152866242, 0.10828025477707007, 0.09235668789808917, 0.07006369426751592, 0.06369426751592357, 0.06369426751592357, 0.06050955414012739, 0.06050955414012739, 0.06050955414012739, 0.05732484076433121, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.9140127388535032, 0.8726114649681529, 0.04777070063694268, 0.04777070063694268, 0.04777070063694268, 0.04777070063694268, 0.04777070063694268, 0.910828025477707, 0.9267515923566879, 0.9235668789808917, 0.9076433121019108, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.041401273885350316, 0.041401273885350316, 0.041401273885350316, 0.044585987261146494, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Chloroplast_duf.gap.json b/pfam_gap_rates/Chloroplast_duf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b85fed9e89634e240c88280582e3540b96a6f839
--- /dev/null
+++ b/pfam_gap_rates/Chloroplast_duf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Choline_kinase.gap.json b/pfam_gap_rates/Choline_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58c3037f1944df70a9bcfa9eb59878fbe15698ac
--- /dev/null
+++ b/pfam_gap_rates/Choline_kinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Chorismate_bind.gap.json b/pfam_gap_rates/Chorismate_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..098c345e0fb10f8cc094bc5f646f28ad94d5e781
--- /dev/null
+++ b/pfam_gap_rates/Chorismate_bind.gap.json
@@ -0,0 +1 @@
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"gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Clathrin-link.gap.json b/pfam_gap_rates/Clathrin-link.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..740198d1188aa81592b56f19123f240cc606d3cb
--- /dev/null
+++ b/pfam_gap_rates/Clathrin-link.gap.json
@@ -0,0 +1 @@
+{"family": "Clathrin-link", "n_seqs": 267, "length": 24, "gap_rates": [0.1760299625468165, 0.11610486891385768, 0.056179775280898875, 0.003745318352059925, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.026217228464419477, 0.04119850187265917], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Clathrin.gap.json b/pfam_gap_rates/Clathrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb7bd97144a1f7bdb5c584d91a7cd7a66577bf86
--- /dev/null
+++ b/pfam_gap_rates/Clathrin.gap.json
@@ -0,0 +1 @@
+{"family": "Clathrin", "n_seqs": 3763, "length": 168, "gap_rates": [0.8461334041987776, 0.6757905926122775, 0.5354770130215254, 0.4382141908052086, 0.3999468509168217, 0.3356364602710603, 0.27690672335902206, 0.24289131012490034, 0.21445655062450172, 0.187350518203561, 0.17459473824076535, 0.16157321286207812, 0.15253786872176456, 0.14775445123571618, 0.14615997874036674, 0.1421737975019931, 0.13818761626361944, 0.13845336167951103, 0.13499867127292053, 0.15678979537602977, 0.14323677916555938, 0.10284347595003986, 0.09221365931437683, 0.07547169811320754, 0.06962529896359287, 0.06457613606165294, 0.060855700239170876, 0.05660377358490566, 0.05341482859420675, 0.05235184693064045, 0.05235184693064045, 0.05102311985118257, 0.05102311985118257, 0.05102311985118257, 0.2766409779431305, 0.26946585171405796, 0.25405261759234654, 0.19612011692798298, 0.15944724953494552, 0.882806271591815, 0.8668615466383205, 0.04836566569226681, 0.13845336167951103, 0.04065904863141111, 0.036938612808929044, 0.03507839489768801, 0.032952431570555406, 0.02896625033218177, 0.026574541589157587, 0.02577730534148286, 0.02179112410310922, 0.018867924528301886, 0.017007706617060855, 0.01674196120116928, 0.016210470369386127, 0.01594472495349455, 0.015413234121711401, 0.914164230667021, 0.9372840818495881, 0.9447249534945522, 0.9479138984852511, 0.9492426255647091, 0.9457879351581185, 0.9444592080786607, 0.9162901939941536, 0.9133669944193462, 0.014615997874036673, 0.04172203029497741, 0.5535477013021526, 0.11347329258570289, 0.013021525378687218, 0.011692798299229338, 0.010364071219771459, 0.010364071219771459, 0.010364071219771459, 0.010629816635663035, 0.011161307467446186, 0.8522455487642838, 0.8378952963061387, 0.010629816635663035, 0.022854105766675525, 0.02391708743024183, 0.010629816635663035, 0.9088493223491895, 0.9431304809992027, 0.7842147222960404, 0.011161307467446186, 0.01089556205155461, 0.010098325803879883, 0.009832580387988307, 0.010098325803879883, 0.008769598724422003, 0.009301089556205155, 0.00903534414031358, 0.008769598724422003, 0.009301089556205155, 0.009566834972096731, 0.009301089556205155, 0.009832580387988307, 0.009566834972096731, 0.009301089556205155, 0.009301089556205155, 0.11506776508105235, 0.009566834972096731, 0.009566834972096731, 0.009832580387988307, 0.009566834972096731, 0.8939675790592613, 0.8950305607228275, 0.8934360882274781, 0.009566834972096731, 0.009566834972096731, 0.009566834972096731, 0.011692798299229338, 0.8857294711666224, 0.884666489503056, 0.01089556205155461, 0.010629816635663035, 0.01089556205155461, 0.011161307467446186, 0.011161307467446186, 0.011427052883337762, 0.030826468243422802, 0.030560722827531226, 0.03800159447249535, 0.8937018336433696, 0.1597129949508371, 0.5822482062184428, 0.041456284879085835, 0.029231995748073347, 0.031092213659314378, 0.09433962264150944, 0.04119053946319426, 0.03507839489768801, 0.03640712197714589, 0.03720435822482062, 0.03720435822482062, 0.040127557799627955, 0.04251926654265214, 0.8378952963061387, 0.823279298432102, 0.04756842944459208, 0.04836566569226681, 0.05022588360350784, 0.056338028169014086, 0.06776508105235185, 0.08025511559925591, 0.09779431304809992, 0.10550093010895562, 0.11506776508105235, 0.12144565506245017, 0.12835503587563116, 0.13499867127292053, 0.1387191070954026, 0.1411108158384268, 0.14376826999734255, 0.15041190539463195, 0.1642306670209939, 0.19107095402604304, 0.22747807600318895, 0.23385596598458677, 0.2511294180175392, 0.2878022854105767, 0.31676853574275843, 0.39489768801488173, 0.4857826202498007, 0.630348126494818, 0.9271857560457082], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cnd3.gap.json b/pfam_gap_rates/Cnd3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7373e97df7b7b6dcd3f42ee4111a34c800a6c9d7
--- /dev/null
+++ b/pfam_gap_rates/Cnd3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CoA_transf_3.gap.json b/pfam_gap_rates/CoA_transf_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af3de435e4fd810081091d03272bc1038a71c93a
--- /dev/null
+++ b/pfam_gap_rates/CoA_transf_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Co_AT_N.gap.json b/pfam_gap_rates/Co_AT_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b79d243b2dbce2a7694593a38c9698541367c44e
--- /dev/null
+++ b/pfam_gap_rates/Co_AT_N.gap.json
@@ -0,0 +1 @@
+{"family": "Co_AT_N", "n_seqs": 198, "length": 28, "gap_rates": [0.803030303030303, 0.7121212121212122, 0.5202020202020202, 0.8939393939393939, 0.9494949494949495, 0.7424242424242424, 0.24242424242424243, 0.21212121212121213, 0.13636363636363635, 0.03535353535353535, 0.23232323232323232, 0.23232323232323232, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.020202020202020204, 0.050505050505050504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Coatamer_beta_C.gap.json b/pfam_gap_rates/Coatamer_beta_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..531005c0c1eb3ee100328e7cd849d98032ffa385
--- /dev/null
+++ b/pfam_gap_rates/Coatamer_beta_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Coatomer_WDAD.gap.json b/pfam_gap_rates/Coatomer_WDAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43370d99046dcface2517c94d786ace032dd0fa2
--- /dev/null
+++ b/pfam_gap_rates/Coatomer_WDAD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cob_adeno_trans.gap.json b/pfam_gap_rates/Cob_adeno_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..880441b500a98c2f19c25b8a69eb0aad0c4da525
--- /dev/null
+++ b/pfam_gap_rates/Cob_adeno_trans.gap.json
@@ -0,0 +1 @@
+{"family": "Cob_adeno_trans", "n_seqs": 1426, "length": 182, "gap_rates": [0.23492286115007013, 0.12131837307152875, 0.11921458625525946, 0.11430575035063113, 0.10168302945301542, 0.09747545582047686, 0.0967741935483871, 0.09537166900420757, 0.09396914446002805, 0.05820476858345021, 0.05539971949509116, 0.05329593267882188, 0.052594670406732116, 0.051893408134642355, 0.051893408134642355, 0.07012622720897616, 0.10168302945301542, 0.04838709677419355, 0.047685834502103785, 0.046984572230014024, 0.046984572230014024, 0.04628330995792426, 0.04628330995792426, 0.04628330995792426, 0.0455820476858345, 0.0455820476858345, 0.0455820476858345, 0.04417952314165498, 0.043478260869565216, 0.042776998597475455, 0.0364656381486676, 0.0273492286115007, 0.025245441795231416, 0.025245441795231416, 0.025245441795231416, 0.025245441795231416, 0.025245441795231416, 0.025245441795231416, 0.025245441795231416, 0.025946704067321177, 0.025946704067321177, 0.025946704067321177, 0.025946704067321177, 0.13464235624123422, 0.14446002805049088, 0.1661991584852735, 0.23632538569424966, 0.3211781206171108, 0.3022440392706872, 0.814866760168303, 0.8877980364656382, 0.9389901823281908, 0.9207573632538569, 0.864656381486676, 0.697054698457223, 0.12201963534361851, 0.0546984572230014, 0.03716690042075736, 0.030154277699859747, 0.0273492286115007, 0.024544179523141654, 0.019635343618513323, 0.0182328190743338, 0.01753155680224404, 0.0182328190743338, 0.01753155680224404, 0.01753155680224404, 0.016129032258064516, 0.016129032258064516, 0.016830294530154277, 0.016830294530154277, 0.016830294530154277, 0.016129032258064516, 0.01753155680224404, 0.01753155680224404, 0.0182328190743338, 0.019635343618513323, 0.03295932678821879, 0.07713884992987377, 0.13394109396914447, 0.5259467040673211, 0.7741935483870968, 0.9095371669004207, 0.8436185133239832, 0.6171107994389902, 0.46774193548387094, 0.33520336605890605, 0.2776998597475456, 0.24333800841514727, 0.20476858345021037, 0.03576437587657784, 0.0273492286115007, 0.03155680224403927, 0.02244039270687237, 0.021739130434782608, 0.021739130434782608, 0.02244039270687237, 0.021037868162692847, 0.046984572230014024, 0.019635343618513323, 0.01753155680224404, 0.01753155680224404, 0.01753155680224404, 0.01753155680224404, 0.016830294530154277, 0.016830294530154277, 0.016129032258064516, 0.014726507713884993, 0.015427769985974754, 0.01332398316970547, 0.01753155680224404, 0.016129032258064516, 0.025245441795231416, 0.019635343618513323, 0.018934081346423562, 0.03576437587657784, 0.019635343618513323, 0.019635343618513323, 0.016129032258064516, 0.015427769985974754, 0.015427769985974754, 0.014025245441795231, 0.012622720897615708, 0.01332398316970547, 0.021739130434782608, 0.019635343618513323, 0.018934081346423562, 0.019635343618513323, 0.019635343618513323, 0.020336605890603085, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.015427769985974754, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.01753155680224404, 0.01753155680224404, 0.01753155680224404, 0.01753155680224404, 0.0182328190743338, 0.0182328190743338, 0.01753155680224404, 0.0182328190743338, 0.018934081346423562, 0.01753155680224404, 0.019635343618513323, 0.020336605890603085, 0.05329593267882188, 0.05119214586255259, 0.6339410939691444, 0.9018232819074333, 0.9467040673211781, 0.9354838709677419, 0.7398316970546984, 0.08345021037868162, 0.029453015427769985, 0.0273492286115007, 0.019635343618513323, 0.019635343618513323, 0.019635343618513323, 0.020336605890603085, 0.020336605890603085, 0.020336605890603085, 0.020336605890603085, 0.020336605890603085, 0.021739130434782608, 0.025245441795231416, 0.025946704067321177, 0.0273492286115007, 0.02664796633941094, 0.02664796633941094, 0.028050490883590462, 0.028050490883590462, 0.029453015427769985, 0.03155680224403927, 0.05960729312762973, 0.13253856942496495, 0.8611500701262272], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Collagen_bind_2.gap.json b/pfam_gap_rates/Collagen_bind_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a09d62277fe49413581674c2c51595026a6235e2
--- /dev/null
+++ b/pfam_gap_rates/Collagen_bind_2.gap.json
@@ -0,0 +1 @@
+{"family": "Collagen_bind_2", "n_seqs": 137, "length": 108, "gap_rates": [0.6277372262773723, 0.5547445255474452, 0.5255474452554745, 0.5182481751824818, 0.48905109489051096, 0.45255474452554745, 0.44525547445255476, 0.44525547445255476, 0.45255474452554745, 0.43795620437956206, 0.45255474452554745, 0.9343065693430657, 0.3284671532846715, 0.2846715328467153, 0.21897810218978103, 0.1897810218978102, 0.16058394160583941, 0.13138686131386862, 0.08759124087591241, 0.06569343065693431, 0.051094890510948905, 0.051094890510948905, 0.043795620437956206, 0.014598540145985401, 0.014598540145985401, 0.06569343065693431, 0.7153284671532847, 0.6715328467153284, 0.014598540145985401, 0.029197080291970802, 0.17518248175182483, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.021897810218978103, 0.014598540145985401, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.014598540145985401, 0.014598540145985401, 0.029197080291970802, 0.021897810218978103, 0.0364963503649635, 0.021897810218978103, 0.0364963503649635, 0.20437956204379562, 0.9416058394160584, 0.9051094890510949, 0.014598540145985401, 0.0072992700729927005, 0.0072992700729927005, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.927007299270073, 0.927007299270073, 0.9051094890510949, 0.0072992700729927005, 0.0072992700729927005, 0.8467153284671532, 0.927007299270073, 0.9343065693430657, 0.8759124087591241, 0.8102189781021898, 0.0072992700729927005, 0.0, 0.0072992700729927005, 0.0072992700729927005, 0.9343065693430657, 0.948905109489051, 0.781021897810219, 0.1386861313868613, 0.029197080291970802, 0.029197080291970802, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.014598540145985401, 0.014598540145985401, 0.2773722627737226, 0.30656934306569344, 0.3357664233576642, 0.23357664233576642, 0.17518248175182483, 0.06569343065693431, 0.043795620437956206, 0.043795620437956206, 0.051094890510948905, 0.051094890510948905, 0.072992700729927, 0.0948905109489051, 0.145985401459854, 0.6058394160583942], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Complex1_49kDa.gap.json b/pfam_gap_rates/Complex1_49kDa.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e77b05e8d96e4f389b83af17d0de1c9fb018783a
--- /dev/null
+++ b/pfam_gap_rates/Complex1_49kDa.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CopG_antitoxin.gap.json b/pfam_gap_rates/CopG_antitoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f48e71aacc505e01edf652c7723b239291ef5be3
--- /dev/null
+++ b/pfam_gap_rates/CopG_antitoxin.gap.json
@@ -0,0 +1 @@
+{"family": "CopG_antitoxin", "n_seqs": 264, "length": 81, "gap_rates": [0.6098484848484849, 0.3106060606060606, 0.2878787878787879, 0.2803030303030303, 0.26136363636363635, 0.23106060606060605, 0.19318181818181818, 0.17424242424242425, 0.125, 0.11742424242424243, 0.11363636363636363, 0.10984848484848485, 0.10606060606060606, 0.10606060606060606, 0.10227272727272728, 0.10227272727272728, 0.09090909090909091, 0.08712121212121213, 0.11742424242424243, 0.08712121212121213, 0.08712121212121213, 0.07575757575757576, 0.056818181818181816, 0.06060606060606061, 0.3409090909090909, 0.24242424242424243, 0.07954545454545454, 0.04924242424242424, 0.056818181818181816, 0.06439393939393939, 0.056818181818181816, 0.04924242424242424, 0.05303030303030303, 0.04924242424242424, 0.05303030303030303, 0.8068181818181818, 0.32575757575757575, 0.15151515151515152, 0.10227272727272728, 0.9356060606060606, 0.08333333333333333, 0.06818181818181818, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.030303030303030304, 0.026515151515151516, 0.12121212121212122, 0.10984848484848485, 0.01893939393939394, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.01893939393939394, 0.01893939393939394, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.030303030303030304, 0.03787878787878788, 0.06818181818181818, 0.17424242424242425, 0.7462121212121212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Copine.gap.json b/pfam_gap_rates/Copine.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0593804503ff5579f530d6521d1281648bdacf15
--- /dev/null
+++ b/pfam_gap_rates/Copine.gap.json
@@ -0,0 +1 @@
+{"family": "Copine", "n_seqs": 982, "length": 244, "gap_rates": [0.2494908350305499, 0.20977596741344195, 0.20570264765784113, 0.20468431771894094, 0.19959266802443992, 0.19653767820773932, 0.42769857433808556, 0.20264765784114053, 0.9490835030549898, 0.8441955193482689, 0.1690427698574338, 0.16089613034623218, 0.15478615071283094, 0.15274949083503056, 0.15173116089613034, 0.14867617107942974, 0.14562118126272913, 0.14358452138492872, 0.14358452138492872, 0.14358452138492872, 0.14358452138492872, 0.14358452138492872, 0.1425661914460285, 0.1425661914460285, 0.1425661914460285, 0.1415478615071283, 0.1415478615071283, 0.1395112016293279, 0.14052953156822812, 0.14052953156822812, 0.14358452138492872, 0.1415478615071283, 0.1395112016293279, 0.1334012219959267, 0.13441955193482688, 0.1364562118126273, 0.1384928716904277, 0.13747454175152748, 0.13747454175152748, 0.1364562118126273, 0.13441955193482688, 0.13441955193482688, 0.45723014256619143, 0.5274949083503055, 0.45723014256619143, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CotE.gap.json b/pfam_gap_rates/CotE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f62e26315b60eb0c710b83a0f1bc2605e4871d9
--- /dev/null
+++ b/pfam_gap_rates/CotE.gap.json
@@ -0,0 +1 @@
+{"family": "CotE", "n_seqs": 140, "length": 181, "gap_rates": [0.4857142857142857, 0.02857142857142857, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007142857142857143, 0.0, 0.0, 0.0, 0.02142857142857143, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.95, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02142857142857143, 0.02142857142857143, 0.0, 0.007142857142857143, 0.007142857142857143, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07142857142857142, 0.22857142857142856, 0.04285714285714286, 0.02857142857142857, 0.09285714285714286, 0.007142857142857143, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.35714285714285715, 0.2357142857142857, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.22857142857142856, 0.03571428571428571, 0.05, 0.05, 0.05, 0.05, 0.04285714285714286, 0.16428571428571428, 0.11428571428571428, 0.10714285714285714, 0.1, 0.1, 0.15, 0.6071428571428571, 0.9, 0.75, 0.5142857142857142, 0.10714285714285714, 0.1, 0.12142857142857143, 0.12142857142857143, 0.14285714285714285, 0.15, 0.15714285714285714, 0.17857142857142858, 0.8285714285714286, 0.16428571428571428, 0.16428571428571428, 0.17142857142857143, 0.17857142857142858, 0.18571428571428572, 0.2, 0.21428571428571427, 0.4714285714285714, 0.95], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CotJA.gap.json b/pfam_gap_rates/CotJA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd265328af6ed3943ce13f4bc795703a590a4060
--- /dev/null
+++ b/pfam_gap_rates/CotJA.gap.json
@@ -0,0 +1 @@
+{"family": "CotJA", "n_seqs": 290, "length": 36, "gap_rates": [0.5689655172413793, 0.07241379310344828, 0.05172413793103448, 0.027586206896551724, 0.006896551724137931, 0.0034482758620689655, 0.0034482758620689655, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0034482758620689655, 0.013793103448275862, 0.04482758620689655, 0.08275862068965517, 0.09310344827586207], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CrtC.gap.json b/pfam_gap_rates/CrtC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be86ebe837ce7a34eb6edb09d1760c31bb099d23
--- /dev/null
+++ b/pfam_gap_rates/CrtC.gap.json
@@ -0,0 +1 @@
+{"family": "CrtC", "n_seqs": 294, "length": 194, "gap_rates": [0.3299319727891156, 0.12244897959183673, 0.10204081632653061, 0.10204081632653061, 0.09863945578231292, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.11904761904761904, 0.10204081632653061, 0.18027210884353742, 0.1360544217687075, 0.11904761904761904, 0.1054421768707483, 0.09523809523809523, 0.1054421768707483, 0.10204081632653061, 0.09183673469387756, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.09523809523809523, 0.08843537414965986, 0.1326530612244898, 0.12585034013605442, 0.12244897959183673, 0.1564625850340136, 0.15306122448979592, 0.2619047619047619, 0.3979591836734694, 0.47959183673469385, 0.8027210884353742, 0.9149659863945578, 0.9387755102040817, 0.8537414965986394, 0.6564625850340136, 0.43197278911564624, 0.29931972789115646, 0.24149659863945577, 0.18027210884353742, 0.8979591836734694, 0.7925170068027211, 0.12244897959183673, 0.10204081632653061, 0.09523809523809523, 0.09183673469387756, 0.09523809523809523, 0.09523809523809523, 0.09183673469387756, 0.08843537414965986, 0.09183673469387756, 0.08503401360544217, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.07482993197278912, 0.3401360544217687, 0.336734693877551, 0.08503401360544217, 0.0782312925170068, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.09183673469387756, 0.09183673469387756, 0.08843537414965986, 0.08503401360544217, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.14625850340136054, 0.15306122448979592, 0.1360544217687075, 0.11224489795918367, 0.08163265306122448, 0.0782312925170068, 0.08503401360544217, 0.09183673469387756, 0.08843537414965986, 0.08163265306122448, 0.08163265306122448, 0.08843537414965986, 0.08503401360544217, 0.08503401360544217, 0.0782312925170068, 0.07482993197278912, 0.07482993197278912, 0.08163265306122448, 0.10204081632653061, 0.09183673469387756, 0.08843537414965986, 0.1292517006802721, 0.12585034013605442, 0.7653061224489796, 0.8809523809523809, 0.9183673469387755, 0.8537414965986394, 0.5170068027210885, 0.17687074829931973, 0.3435374149659864, 0.20408163265306123, 0.10884353741496598, 0.06462585034013606, 0.05442176870748299, 0.04421768707482993, 0.04081632653061224, 0.04081632653061224, 0.03741496598639456, 0.047619047619047616, 0.05442176870748299, 0.061224489795918366, 0.9421768707482994, 0.8945578231292517, 0.05102040816326531, 0.03741496598639456, 0.03741496598639456, 0.04081632653061224, 0.04081632653061224, 0.9489795918367347, 0.9489795918367347, 0.9489795918367347, 0.04081632653061224, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.03741496598639456, 0.034013605442176874, 0.04081632653061224, 0.03741496598639456, 0.03741496598639456, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.047619047619047616, 0.047619047619047616, 0.03741496598639456, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.034013605442176874, 0.047619047619047616, 0.935374149659864, 0.3435374149659864, 0.19727891156462585, 0.08503401360544217, 0.061224489795918366, 0.07142857142857142, 0.04421768707482993, 0.04081632653061224, 0.023809523809523808, 0.023809523809523808, 0.04081632653061224, 0.030612244897959183, 0.027210884353741496, 0.027210884353741496, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.027210884353741496, 0.027210884353741496, 0.05102040816326531, 0.061224489795918366, 0.8707482993197279, 0.9285714285714286, 0.06462585034013606, 0.05442176870748299, 0.027210884353741496, 0.03741496598639456, 0.027210884353741496, 0.027210884353741496, 0.935374149659864, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.047619047619047616, 0.08843537414965986, 0.41156462585034015], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CtaG_Cox11.gap.json b/pfam_gap_rates/CtaG_Cox11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e40bb7c1f757ef82886c331bffa56c4d565fd4b5
--- /dev/null
+++ b/pfam_gap_rates/CtaG_Cox11.gap.json
@@ -0,0 +1 @@
+{"family": "CtaG_Cox11", "n_seqs": 685, "length": 165, "gap_rates": [0.19416058394160585, 0.10218978102189781, 0.08175182481751825, 0.07153284671532846, 0.06861313868613139, 0.06861313868613139, 0.059854014598540145, 0.05547445255474453, 0.05693430656934306, 0.05547445255474453, 0.05547445255474453, 0.05547445255474453, 0.05547445255474453, 0.05547445255474453, 0.05401459854014599, 0.051094890510948905, 0.051094890510948905, 0.051094890510948905, 0.051094890510948905, 0.051094890510948905, 0.05401459854014599, 0.05547445255474453, 0.05401459854014599, 0.12408759124087591, 0.6715328467153284, 0.8233576642335766, 0.9474452554744526, 0.8773722627737226, 0.7897810218978102, 0.5386861313868613, 0.33138686131386863, 0.42043795620437957, 0.3854014598540146, 0.2875912408759124, 0.8437956204379562, 0.891970802919708, 0.9182481751824818, 0.9474452554744526, 0.92992700729927, 0.8948905109489051, 0.8715328467153285, 0.8262773722627738, 0.14306569343065692, 0.06715328467153285, 0.049635036496350364, 0.043795620437956206, 0.03795620437956204, 0.03795620437956204, 0.035036496350364967, 0.6963503649635037, 0.3094890510948905, 0.033576642335766425, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.0364963503649635, 0.04671532846715328, 0.04525547445255475, 0.040875912408759124, 0.12992700729927006, 0.09781021897810219, 0.029197080291970802, 0.029197080291970802, 0.030656934306569343, 0.029197080291970802, 0.029197080291970802, 0.026277372262773723, 0.026277372262773723, 0.026277372262773723, 0.029197080291970802, 0.029197080291970802, 0.024817518248175182, 0.027737226277372264, 0.029197080291970802, 0.027737226277372264, 0.027737226277372264, 0.027737226277372264, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.027737226277372264, 0.027737226277372264, 0.027737226277372264, 0.027737226277372264, 0.026277372262773723, 0.027737226277372264, 0.027737226277372264, 0.027737226277372264, 0.027737226277372264, 0.026277372262773723, 0.026277372262773723, 0.026277372262773723, 0.026277372262773723, 0.026277372262773723, 0.026277372262773723, 0.027737226277372264, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.030656934306569343, 0.032116788321167884, 0.030656934306569343, 0.032116788321167884, 0.03795620437956204, 0.03795620437956204, 0.03941605839416058, 0.03795620437956204, 0.03795620437956204, 0.03795620437956204, 0.03795620437956204, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.033576642335766425, 0.035036496350364967, 0.035036496350364967, 0.033576642335766425, 0.035036496350364967, 0.035036496350364967, 0.033576642335766425, 0.035036496350364967, 0.035036496350364967, 0.035036496350364967, 0.035036496350364967, 0.035036496350364967, 0.033576642335766425, 0.0364963503649635, 0.033576642335766425, 0.032116788321167884, 0.032116788321167884, 0.033576642335766425, 0.033576642335766425, 0.033576642335766425, 0.033576642335766425, 0.033576642335766425, 0.035036496350364967, 0.035036496350364967, 0.035036496350364967, 0.035036496350364967, 0.035036496350364967, 0.035036496350364967, 0.30364963503649633, 0.30364963503649633, 0.30364963503649633, 0.3051094890510949, 0.3051094890510949, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.043795620437956206, 0.23795620437956205], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cu_amine_oxidN2.gap.json b/pfam_gap_rates/Cu_amine_oxidN2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7cb1298176c8fb0c7471f7bb313e2fe0db07c38b
--- /dev/null
+++ b/pfam_gap_rates/Cu_amine_oxidN2.gap.json
@@ -0,0 +1 @@
+{"family": "Cu_amine_oxidN2", "n_seqs": 566, "length": 108, "gap_rates": [0.2067137809187279, 0.13250883392226148, 0.127208480565371, 0.1254416961130742, 0.12367491166077739, 0.11130742049469965, 0.10600706713780919, 0.09717314487632508, 0.09187279151943463, 0.09187279151943463, 0.09010600706713781, 0.08833922261484099, 0.08303886925795052, 0.07773851590106007, 0.07420494699646643, 0.0706713780918728, 0.061837455830388695, 0.054770318021201414, 0.04946996466431095, 0.04946996466431095, 0.045936395759717315, 0.04063604240282685, 0.5653710247349824, 0.34275618374558303, 0.1254416961130742, 0.09363957597173145, 0.012367491166077738, 0.9363957597173145, 0.842756183745583, 0.0088339222614841, 0.007067137809187279, 0.00530035335689046, 0.00530035335689046, 0.00530035335689046, 0.00530035335689046, 0.0017667844522968198, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0017667844522968198, 0.0017667844522968198, 0.00530035335689046, 0.01060070671378092, 0.0176678445229682, 0.7526501766784452, 0.833922261484099, 0.8851590106007067, 0.9063604240282686, 0.9469964664310954, 0.9487632508833922, 0.9434628975265018, 0.8992932862190812, 0.8639575971731449, 0.784452296819788, 0.7332155477031802, 0.20848056537102475, 0.10247349823321555, 0.044169611307420496, 0.04240282685512368, 0.03356890459363958, 0.028268551236749116, 0.022968197879858657, 0.7173144876325088, 0.872791519434629, 0.8798586572438163, 0.8286219081272085, 0.657243816254417, 0.0353356890459364, 0.03180212014134275, 0.030035335689045935, 0.03180212014134275, 0.03180212014134275, 0.03180212014134275, 0.038869257950530034, 0.054770318021201414, 0.061837455830388695, 0.06713780918727916, 0.07597173144876325, 0.9293286219081273, 0.08303886925795052, 0.08657243816254417, 0.09187279151943463, 0.09717314487632508, 0.7526501766784452, 0.6925795053003534, 0.12190812720848057, 0.127208480565371, 0.1254416961130742, 0.12367491166077739, 0.12367491166077739, 0.12897526501766785, 0.13074204946996468, 0.15901060070671377, 0.1855123674911661, 0.19964664310954064, 0.21554770318021202, 0.23498233215547704, 0.2756183745583039, 0.3303886925795053, 0.4558303886925795, 0.5565371024734982, 0.7932862190812721, 0.9487632508833922], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cullin_Nedd8.gap.json b/pfam_gap_rates/Cullin_Nedd8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9ada3392e83ca4de86d98628b3d7fd5a28f8648
--- /dev/null
+++ b/pfam_gap_rates/Cullin_Nedd8.gap.json
@@ -0,0 +1 @@
+{"family": "Cullin_Nedd8", "n_seqs": 1404, "length": 63, "gap_rates": [0.2720797720797721, 0.08475783475783476, 0.0698005698005698, 0.0584045584045584, 0.038461538461538464, 0.03276353276353276, 0.029914529914529916, 0.026353276353276354, 0.023504273504273504, 0.022792022792022793, 0.020655270655270654, 0.020655270655270654, 0.017094017094017096, 0.014957264957264958, 0.014245014245014245, 0.012108262108262107, 0.010683760683760684, 0.009971509971509971, 0.009971509971509971, 0.007834757834757835, 0.007834757834757835, 0.00641025641025641, 0.00641025641025641, 0.007122507122507123, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.01282051282051282, 0.011396011396011397, 0.009971509971509971, 0.010683760683760684, 0.1915954415954416, 0.14957264957264957, 0.009259259259259259, 0.008547008547008548, 0.009971509971509971, 0.009971509971509971, 0.011396011396011397, 0.012108262108262107, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.014245014245014245, 0.017806267806267807, 0.020655270655270654, 0.023504273504273504, 0.024216524216524215, 0.02564102564102564, 0.02849002849002849, 0.029914529914529916, 0.030626780626780627, 0.03276353276353276, 0.03418803418803419, 0.038461538461538464, 0.039886039886039885, 0.04131054131054131, 0.04700854700854701, 0.053418803418803416, 0.07905982905982906, 0.22863247863247863, 0.5576923076923077], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CwfJ_C_1.gap.json b/pfam_gap_rates/CwfJ_C_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3c3d929fddde3a0838d940483f95ea8809f7fad
--- /dev/null
+++ b/pfam_gap_rates/CwfJ_C_1.gap.json
@@ -0,0 +1 @@
+{"family": "CwfJ_C_1", "n_seqs": 577, "length": 146, "gap_rates": [0.8960138648180243, 0.6949740034662045, 0.5719237435008665, 0.44194107452339687, 0.3934142114384749, 0.3275563258232236, 0.2668977469670711, 0.20797227036395147, 0.11091854419410745, 0.07972270363951472, 0.06932409012131716, 0.058925476603119586, 0.058925476603119586, 0.05719237435008666, 0.05719237435008666, 0.05545927209705372, 0.060658578856152515, 0.05719237435008666, 0.058925476603119586, 0.07279029462738301, 0.060658578856152515, 0.05545927209705372, 0.04852686308492201, 0.04679376083188908, 0.04852686308492201, 0.045060658578856154, 0.043327556325823226, 0.045060658578856154, 0.045060658578856154, 0.045060658578856154, 0.043327556325823226, 0.043327556325823226, 0.03119584055459272, 0.029462738301559793, 0.029462738301559793, 0.02772963604852686, 0.02772963604852686, 0.02772963604852686, 0.02772963604852686, 0.029462738301559793, 0.5580589254766031, 0.03119584055459272, 0.03119584055459272, 0.03119584055459272, 0.7608318890814558, 0.779896013864818, 0.7833622183708839, 0.7885615251299827, 0.8232235701906413, 0.8994800693240901, 0.8717504332755632, 0.8197573656845754, 0.7850953206239168, 0.7816291161178509, 0.7764298093587522, 0.7538994800693241, 0.03119584055459272, 0.03119584055459272, 0.03119584055459272, 0.025996533795493933, 0.025996533795493933, 0.024263431542461005, 0.025996533795493933, 0.025996533795493933, 0.024263431542461005, 0.022530329289428077, 0.02079722703639515, 0.019064124783362217, 0.019064124783362217, 0.019064124783362217, 0.022530329289428077, 0.019064124783362217, 0.019064124783362217, 0.02079722703639515, 0.02079722703639515, 0.019064124783362217, 0.019064124783362217, 0.8006932409012132, 0.8058925476603119, 0.9168110918544194, 0.9393414211438474, 0.8804159445407279, 0.804159445407279, 0.7989601386481803, 0.02079722703639515, 0.02079722703639515, 0.02079722703639515, 0.019064124783362217, 0.02079722703639515, 0.02079722703639515, 0.024263431542461005, 0.03986135181975736, 0.043327556325823226, 0.03986135181975736, 0.0415944540727903, 0.0415944540727903, 0.0415944540727903, 0.0415944540727903, 0.0415944540727903, 0.03986135181975736, 0.9220103986135182, 0.03986135181975736, 0.0415944540727903, 0.045060658578856154, 0.04852686308492201, 0.05025996533795494, 0.043327556325823226, 0.043327556325823226, 0.043327556325823226, 0.043327556325823226, 0.043327556325823226, 0.043327556325823226, 0.043327556325823226, 0.043327556325823226, 0.18890814558058924, 0.4020797227036395, 0.9098786828422877, 0.8058925476603119, 0.39168110918544197, 0.04852686308492201, 0.05025996533795494, 0.04852686308492201, 0.04852686308492201, 0.04852686308492201, 0.04852686308492201, 0.04852686308492201, 0.04852686308492201, 0.05199306759098787, 0.05199306759098787, 0.053726169844020795, 0.05545927209705372, 0.05545927209705372, 0.060658578856152515, 0.060658578856152515, 0.0658578856152513, 0.06932409012131716, 0.09878682842287695, 0.13344887348353554, 0.14558058925476602, 0.17677642980935876, 0.27902946273830154, 0.30155979202772965, 0.3327556325823224, 0.35181975736568455, 0.3778162911611785, 0.5979202772963604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CybS.gap.json b/pfam_gap_rates/CybS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2214dc79a7c326952f0e03eaaacb5afced5a8426
--- /dev/null
+++ b/pfam_gap_rates/CybS.gap.json
@@ -0,0 +1 @@
+{"family": "CybS", "n_seqs": 282, "length": 134, "gap_rates": [0.8971631205673759, 0.74822695035461, 0.7056737588652482, 0.6524822695035462, 0.624113475177305, 0.6134751773049646, 0.599290780141844, 0.5886524822695035, 0.5638297872340425, 0.5531914893617021, 0.5390070921985816, 0.4716312056737589, 0.43617021276595747, 0.40070921985815605, 0.39361702127659576, 0.37943262411347517, 0.37943262411347517, 0.375886524822695, 0.36524822695035464, 0.34397163120567376, 0.32269503546099293, 0.2872340425531915, 0.2801418439716312, 0.2730496453900709, 0.2553191489361702, 0.22340425531914893, 0.20921985815602837, 0.19148936170212766, 0.16666666666666666, 0.1276595744680851, 0.11702127659574468, 0.10638297872340426, 0.09574468085106383, 0.07801418439716312, 0.07801418439716312, 0.07446808510638298, 0.07092198581560284, 0.0673758865248227, 0.05673758865248227, 0.05673758865248227, 0.04609929078014184, 0.0425531914893617, 0.03546099290780142, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.03546099290780142, 0.024822695035460994, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.028368794326241134, 0.8404255319148937, 0.42907801418439717, 0.36879432624113473, 0.08156028368794327, 0.028368794326241134, 0.024822695035460994, 0.031914893617021274, 0.02127659574468085, 0.02127659574468085, 0.01773049645390071, 0.01773049645390071, 0.01773049645390071, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.01773049645390071, 0.01773049645390071, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.01773049645390071, 0.010638297872340425, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.01773049645390071, 0.01773049645390071, 0.01773049645390071, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.028368794326241134, 0.028368794326241134, 0.0425531914893617, 0.0851063829787234, 0.11702127659574468, 0.13829787234042554, 0.7695035460992907, 0.12411347517730496, 0.0851063829787234, 0.05673758865248227, 0.04964539007092199, 0.04609929078014184, 0.0425531914893617, 0.0425531914893617, 0.03900709219858156, 0.03900709219858156, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.031914893617021274, 0.03546099290780142, 0.03546099290780142, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.03546099290780142, 0.0425531914893617, 0.03900709219858156, 0.03900709219858156, 0.0425531914893617, 0.03900709219858156, 0.03900709219858156, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.04964539007092199, 0.04964539007092199, 0.05319148936170213, 0.1950354609929078], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyc-maltodext_N.gap.json b/pfam_gap_rates/Cyc-maltodext_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e008d55b56fc423ddb6fc6dfe91f0120e8c2df8
--- /dev/null
+++ b/pfam_gap_rates/Cyc-maltodext_N.gap.json
@@ -0,0 +1 @@
+{"family": "Cyc-maltodext_N", "n_seqs": 126, "length": 89, "gap_rates": [0.1349206349206349, 0.031746031746031744, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.03968253968253968, 0.03968253968253968, 0.031746031746031744, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8571428571428571, 0.10317460317460317, 0.05555555555555555, 0.015873015873015872, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06349206349206349, 0.29365079365079366, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.16666666666666666, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.07936507936507936, 0.07142857142857142, 0.36507936507936506, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.047619047619047616, 0.4444444444444444], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyclase.gap.json b/pfam_gap_rates/Cyclase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca35d07f78c432041d859b931a917b5c7420bc21
--- /dev/null
+++ b/pfam_gap_rates/Cyclase.gap.json
@@ -0,0 +1 @@
+{"family": "Cyclase", "n_seqs": 1840, "length": 271, "gap_rates": [0.46847826086956523, 0.31630434782608696, 0.29184782608695653, 0.28641304347826085, 0.2847826086956522, 0.2826086956521739, 0.2798913043478261, 0.2766304347826087, 0.29293478260869565, 0.29456521739130437, 0.28641304347826085, 0.2956521739130435, 0.28804347826086957, 0.2842391304347826, 0.8581521739130434, 0.3059782608695652, 0.7206521739130435, 0.8945652173913043, 0.4260869565217391, 0.32282608695652176, 0.06195652173913044, 0.08206521739130435, 0.08478260869565217, 0.09239130434782608, 0.11195652173913044, 0.14076086956521738, 0.17445652173913043, 0.2016304347826087, 0.23152173913043478, 0.3173913043478261, 0.5641304347826087, 0.6951086956521739, 0.7559782608695652, 0.8168478260869565, 0.8739130434782608, 0.908695652173913, 0.9211956521739131, 0.9369565217391305, 0.941304347826087, 0.9309782608695653, 0.9141304347826087, 0.8956521739130435, 0.8375, 0.7722826086956521, 0.7304347826086957, 0.6630434782608695, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Cyclin_C.gap.json b/pfam_gap_rates/Cyclin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6687a2505d60d6f9539522c2e72db825ca78197a
--- /dev/null
+++ b/pfam_gap_rates/Cyclin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Cyclin_C", "n_seqs": 2357, "length": 148, "gap_rates": [0.2948663555366992, 0.19558761137038608, 0.1540093338990242, 0.14212982605006363, 0.13449299957573185, 0.12218922358930845, 0.11412812897751379, 0.10733983877810777, 0.09673313534153585, 0.0920661858294442, 0.879507848960543, 0.0903691132795927, 0.08739923631735257, 0.08782350445481545, 0.7653797199830292, 0.8913873568095037, 0.9308442935935511, 0.9490878235044549, 0.9159949087823505, 0.8150190920661858, 0.7479847263470514, 0.16164616037335597, 0.20534577853203226, 0.13491726771319473, 0.5108188375053033, 0.4722104369961816, 0.09333899024183284, 0.8616885871871023, 0.8935086974968179, 0.8349596945269411, 0.23292320746711923, 0.058124734832414086, 0.048366567670767927, 0.048366567670767927, 0.06364022061943148, 0.030123037759864236, 0.028850233347475603, 0.02588035638523547, 0.022486211285532458, 0.01951633432329232, 0.017819261773440814, 0.017394993635977938, 0.01612218922358931, 0.01612218922358931, 0.015697921086126432, 0.013576580398812049, 0.012728044123886296, 0.011879507848960543, 0.010606703436571913, 0.9490878235044549, 0.009333899024183284, 0.009333899024183284, 0.010606703436571913, 0.009333899024183284, 0.008909630886720407, 0.008909630886720407, 0.00848536274925753, 0.009333899024183284, 0.00975816716164616, 0.010182435299109036, 0.010606703436571913, 0.010182435299109036, 0.01103097157403479, 0.010182435299109036, 0.00975816716164616, 0.00975816716164616, 0.01103097157403479, 0.01103097157403479, 0.013576580398812049, 0.014425116673737802, 0.08103521425540942, 0.7161646160373356, 0.9011455239711498, 0.9304200254560883, 0.8451421298260501, 0.5112431056427662, 0.10818837505303351, 0.12091641917691981, 0.10861264319049639, 0.07721680101824353, 0.8913873568095037, 0.9155706406448876, 0.9384811200678829, 0.9461179465422147, 0.927874416631311, 0.9028425965210013, 0.8761137038608401, 0.09673313534153585, 0.0975816716164616, 0.06364022061943148, 0.06533729316928298, 0.06788290199406025, 0.07042851081883751, 0.07339838778107764, 0.07636826474331777, 0.07976240984302078, 0.9011455239711498, 0.09843020789138736, 0.0903691132795927, 0.9473907509546033, 0.08867204072974119, 0.08994484514212983, 0.08994484514212983, 0.08909630886720407, 0.08994484514212983, 0.09376325837929571, 0.09461179465422147, 0.09673313534153585, 0.09800593975392448, 0.10055154857870174, 0.10394569367840475, 0.10946117946542215, 0.11455239711497667, 0.1192193466270683, 0.12643190496393722, 0.137462876537972, 0.8506576156130674, 0.9367840475180313, 0.9198133220195164, 0.8069579974543912, 0.3682647433177768, 0.35511243105642765, 0.3148069579974544, 0.3173525668222317, 0.31904963937208314, 0.3529910903691133, 0.34280865507000424, 0.35511243105642765, 0.36444633008061095, 0.36190072125583367, 0.37165888841747985, 0.3754773016546457, 0.3797199830292745, 0.3835383962664404, 0.39117522274077215, 0.4000848536274926, 0.41832838353839624, 0.4336020364870598, 0.4429359355112431, 0.4607551972846839, 0.46881629189647855, 0.4794229953330505, 0.4883326262197709, 0.49809079338141704, 0.5184556639796352, 0.5731862537123462, 0.6622825625795503, 0.8230801866779804], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cys_knot.gap.json b/pfam_gap_rates/Cys_knot.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c61f9b6985dcaaadee667f7a232a7abd5e158db0
--- /dev/null
+++ b/pfam_gap_rates/Cys_knot.gap.json
@@ -0,0 +1 @@
+{"family": "Cys_knot", "n_seqs": 288, "length": 113, "gap_rates": [0.5729166666666666, 0.4340277777777778, 0.3368055555555556, 0.3229166666666667, 0.3159722222222222, 0.2951388888888889, 0.2465277777777778, 0.6631944444444444, 0.6770833333333334, 0.65625, 0.21875, 0.1875, 0.12152777777777778, 0.10069444444444445, 0.10069444444444445, 0.09375, 0.08333333333333333, 0.0763888888888889, 0.06597222222222222, 0.059027777777777776, 0.059027777777777776, 0.13541666666666666, 0.24305555555555555, 0.052083333333333336, 0.03819444444444445, 0.03125, 0.027777777777777776, 0.024305555555555556, 0.020833333333333332, 0.017361111111111112, 0.017361111111111112, 0.5069444444444444, 0.017361111111111112, 0.017361111111111112, 0.017361111111111112, 0.017361111111111112, 0.5034722222222222, 0.5069444444444444, 0.5069444444444444, 0.8784722222222222, 0.9340277777777778, 0.9236111111111112, 0.7222222222222222, 0.5034722222222222, 0.5034722222222222, 0.5034722222222222, 0.4618055555555556, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.4965277777777778, 0.4930555555555556, 0.4895833333333333, 0.4895833333333333, 0.4895833333333333, 0.4895833333333333, 0.4479166666666667, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.024305555555555556, 0.013888888888888888, 0.010416666666666666, 0.017361111111111112, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.010416666666666666, 0.013888888888888888, 0.9479166666666666, 0.4756944444444444, 0.03819444444444445, 0.04861111111111111, 0.1076388888888889, 0.1875, 0.21180555555555555, 0.2465277777777778, 0.2916666666666667, 0.3229166666666667, 0.3506944444444444, 0.4027777777777778, 0.4756944444444444, 0.5347222222222222, 0.5972222222222222, 0.6458333333333334, 0.7048611111111112, 0.7534722222222222, 0.7708333333333334, 0.8472222222222222, 0.8472222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cys_rich_CPXG.gap.json b/pfam_gap_rates/Cys_rich_CPXG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b8495d90be87883738e146251a0ff9a58ba5dde
--- /dev/null
+++ b/pfam_gap_rates/Cys_rich_CPXG.gap.json
@@ -0,0 +1 @@
+{"family": "Cys_rich_CPXG", "n_seqs": 183, "length": 52, "gap_rates": [0.3770491803278688, 0.10382513661202186, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.03825136612021858, 0.03825136612021858, 0.0273224043715847, 0.02185792349726776, 0.00546448087431694, 0.0, 0.0, 0.0, 0.0, 0.01092896174863388, 0.6885245901639344, 0.01092896174863388, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00546448087431694, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00546448087431694, 0.01092896174863388, 0.02185792349726776, 0.03825136612021858, 0.18032786885245902, 0.09836065573770492, 0.2185792349726776, 0.2568306010928962, 0.22950819672131148, 0.24043715846994534, 0.29508196721311475, 0.37158469945355194, 0.4371584699453552, 0.5956284153005464], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cys_rich_FGFR.gap.json b/pfam_gap_rates/Cys_rich_FGFR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79c05225a11ab8d2808eee13ee4d434b99506f4a
--- /dev/null
+++ b/pfam_gap_rates/Cys_rich_FGFR.gap.json
@@ -0,0 +1 @@
+{"family": "Cys_rich_FGFR", "n_seqs": 1182, "length": 75, "gap_rates": [0.6658206429780034, 0.15228426395939088, 0.06514382402707276, 0.06514382402707276, 0.06429780033840947, 0.06175972927241963, 0.06006768189509306, 0.05922165820642978, 0.05752961082910321, 0.05583756345177665, 0.9365482233502538, 0.934010152284264, 0.05414551607445008, 0.05245346869712352, 0.051607445008460234, 0.04568527918781726, 0.04145516074450085, 0.04060913705583756, 0.04060913705583756, 0.038917089678511, 0.03807106598984772, 0.03637901861252115, 0.0338409475465313, 0.027918781725888325, 0.0194585448392555, 0.015228426395939087, 0.007614213197969543, 0.0025380710659898475, 0.0008460236886632825, 0.0, 0.0, 0.0, 0.0, 0.0008460236886632825, 0.00338409475465313, 0.0025380710659898475, 0.8333333333333334, 0.00338409475465313, 0.00338409475465313, 0.9196277495769881, 0.928087986463621, 0.937394247038917, 0.9196277495769881, 0.9196277495769881, 0.0025380710659898475, 0.043993231810490696, 0.2428087986463621, 0.6683587140439933, 0.7741116751269036, 0.8324873096446701, 0.9255499153976311, 0.9483925549915397, 0.9382402707275804, 0.8764805414551607, 0.8037225042301185, 0.700507614213198, 0.6505922165820643, 0.0727580372250423, 0.02030456852791878, 0.015228426395939087, 0.015228426395939087, 0.018612521150592216, 0.0194585448392555, 0.021150592216582064, 0.021996615905245348, 0.02284263959390863, 0.02284263959390863, 0.023688663282571912, 0.024534686971235193, 0.03807106598984772, 0.06091370558375635, 0.10152284263959391, 0.20727580372250423, 0.33248730964467005, 0.6937394247038917], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytidylate_kin.gap.json b/pfam_gap_rates/Cytidylate_kin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e68edabf665af47577365b1bfc9f8866573280e6
--- /dev/null
+++ b/pfam_gap_rates/Cytidylate_kin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_D1.gap.json b/pfam_gap_rates/Cytochrom_D1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06f73ccc2090c627c3458767c12d922b4b075c7a
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_D1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DASH_Ask1.gap.json b/pfam_gap_rates/DASH_Ask1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb5645284199818a197d191d80d5f1b7962971e3
--- /dev/null
+++ b/pfam_gap_rates/DASH_Ask1.gap.json
@@ -0,0 +1 @@
+{"family": "DASH_Ask1", "n_seqs": 122, "length": 64, "gap_rates": [0.22131147540983606, 0.1557377049180328, 0.12295081967213115, 0.11475409836065574, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.09836065573770492, 0.09836065573770492, 0.09016393442622951, 0.040983606557377046, 0.040983606557377046, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.03278688524590164, 0.03278688524590164, 0.040983606557377046, 0.05737704918032787, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.02459016393442623, 0.02459016393442623, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.01639344262295082, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.02459016393442623, 0.00819672131147541, 0.03278688524590164, 0.03278688524590164, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.05737704918032787, 0.08196721311475409, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09836065573770492, 0.38524590163934425], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DASH_Duo1.gap.json b/pfam_gap_rates/DASH_Duo1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d54b0942153941af03318d55ccf5ad072b15c3b
--- /dev/null
+++ b/pfam_gap_rates/DASH_Duo1.gap.json
@@ -0,0 +1 @@
+{"family": "DASH_Duo1", "n_seqs": 121, "length": 74, "gap_rates": [0.2644628099173554, 0.04132231404958678, 0.03305785123966942, 0.01652892561983471, 0.008264462809917356, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.01652892561983471, 0.01652892561983471, 0.008264462809917356, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.024793388429752067, 0.024793388429752067, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.03305785123966942, 0.04132231404958678, 0.04132231404958678, 0.04132231404958678, 0.04132231404958678, 0.04132231404958678, 0.049586776859504134, 0.06611570247933884, 0.09090909090909091, 0.11570247933884298, 0.21487603305785125, 0.8925619834710744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DC_STAMP.gap.json b/pfam_gap_rates/DC_STAMP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1f912764b3224474a43d20e9bb6913da4830d56
--- /dev/null
+++ b/pfam_gap_rates/DC_STAMP.gap.json
@@ -0,0 +1 @@
+{"family": "DC_STAMP", "n_seqs": 199, "length": 209, "gap_rates": [0.33668341708542715, 0.19597989949748743, 0.19597989949748743, 0.19597989949748743, 0.19095477386934673, 0.19095477386934673, 0.19095477386934673, 0.19095477386934673, 0.19095477386934673, 0.19095477386934673, 0.18592964824120603, 0.18592964824120603, 0.18592964824120603, 0.18592964824120603, 0.18592964824120603, 0.18592964824120603, 0.18592964824120603, 0.2663316582914573, 0.2613065326633166, 0.2613065326633166, 0.2613065326633166, 0.2562814070351759, 0.2562814070351759, 0.18090452261306533, 0.18592964824120603, 0.18090452261306533, 0.18090452261306533, 0.18090452261306533, 0.18090452261306533, 0.18090452261306533, 0.18090452261306533, 0.18090452261306533, 0.17587939698492464, 0.17587939698492464, 0.18090452261306533, 0.20100502512562815, 0.19597989949748743, 0.22110552763819097, 0.20100502512562815, 0.19597989949748743, 0.20100502512562815, 0.20100502512562815, 0.24623115577889448, 0.19597989949748743, 0.19597989949748743, 0.19095477386934673, 0.19095477386934673, 0.18592964824120603, 0.18592964824120603, 0.18592964824120603, 0.18592964824120603, 0.18592964824120603, 0.19095477386934673, 0.18090452261306533, 0.17587939698492464, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.17587939698492464, 0.17587939698492464, 0.18592964824120603, 0.19095477386934673, 0.18592964824120603, 0.17587939698492464, 0.17587939698492464, 0.17587939698492464, 0.17587939698492464, 0.17587939698492464, 0.17587939698492464, 0.17587939698492464, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.18592964824120603, 0.1708542713567839, 0.1708542713567839, 0.1708542713567839, 0.18090452261306533, 0.17587939698492464, 0.19095477386934673, 0.18090452261306533, 0.1708542713567839, 0.1658291457286432, 0.16080402010050251, 0.16080402010050251, 0.1658291457286432, 0.1708542713567839, 0.22110552763819097, 0.20100502512562815, 0.9045226130653267, 0.9045226130653267, 0.9195979899497487, 0.9396984924623115, 0.949748743718593, 0.9447236180904522, 0.9396984924623115, 0.9095477386934674, 0.9045226130653267, 0.8944723618090452, 0.1457286432160804, 0.15577889447236182, 0.1507537688442211, 0.1457286432160804, 0.18090452261306533, 0.15577889447236182, 0.16080402010050251, 0.1658291457286432, 0.16080402010050251, 0.1457286432160804, 0.1507537688442211, 0.1507537688442211, 0.1507537688442211, 0.1407035175879397, 0.1407035175879397, 0.135678391959799, 0.1407035175879397, 0.1407035175879397, 0.1507537688442211, 0.21105527638190955, 0.9246231155778895, 0.15577889447236182, 0.16080402010050251, 0.15577889447236182, 0.914572864321608, 0.9396984924623115, 0.9396984924623115, 0.9396984924623115, 0.9246231155778895, 0.8844221105527639, 0.27638190954773867, 0.21608040201005024, 0.20100502512562815, 0.2562814070351759, 0.18090452261306533, 0.8542713567839196, 0.17587939698492464, 0.15577889447236182, 0.15577889447236182, 0.1507537688442211, 0.1507537688442211, 0.15577889447236182, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.1407035175879397, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.135678391959799, 0.1407035175879397, 0.1507537688442211, 0.1507537688442211, 0.1507537688442211, 0.1457286432160804, 0.1457286432160804, 0.1457286432160804, 0.1457286432160804, 0.1507537688442211, 0.1507537688442211, 0.1507537688442211, 0.15577889447236182, 0.15577889447236182, 0.15577889447236182, 0.16080402010050251, 0.16080402010050251, 0.16080402010050251, 0.16080402010050251, 0.17587939698492464, 0.18090452261306533, 0.18090452261306533, 0.18090452261306533, 0.18090452261306533, 0.20100502512562815, 0.20603015075376885, 0.21105527638190955, 0.25125628140703515], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_5.gap.json b/pfam_gap_rates/DDE_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77e3253b249a9610c3c865a2d55119df57fe3bcf
--- /dev/null
+++ b/pfam_gap_rates/DDE_5.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_5", "n_seqs": 877, "length": 315, "gap_rates": [0.9293044469783353, 0.7605473204104903, 0.7286202964652223, 0.7023945267958951, 0.6818700114025086, 0.6670467502850627, 0.6624857468643102, 0.701254275940707, 0.6818700114025086, 0.6659064994298746, 0.6157354618015963, 0.6043329532497149, 0.5895096921322691, 0.6225769669327252, 0.5438996579247435, 0.5199543899657925, 0.4823261117445838, 0.4732041049030787, 0.4629418472063854, 0.4572405929304447, 0.4526795895096921, 0.44241733181299886, 0.44241733181299886, 0.43671607753705816, 0.43443557582668185, 0.43671607753705816, 0.4264538198403649, 0.42303306727480045, 0.9133409350057012, 0.4150513112884835, 0.40820980615735464, 0.40022805017103763, 0.39680729760547323, 0.3945267958950969, 0.38198403648802737, 0.3774230330672748, 0.3717217787913341, 0.3694412770809578, 0.3637400228050171, 0.887115165336374, 0.9372862029646523, 0.8015963511972634, 0.5279361459521095, 0.4104903078677309, 0.322690992018244, 0.34777651083238315, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_Tn3.gap.json b/pfam_gap_rates/DDE_Tnp_Tn3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..116398c6407d349f78d3bd3f7322d2a1d86e4f8a
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_Tn3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DEAD_2.gap.json b/pfam_gap_rates/DEAD_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b20f53df9e6d085ce1d80aedc56508b418db746
--- /dev/null
+++ b/pfam_gap_rates/DEAD_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DED.gap.json b/pfam_gap_rates/DED.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2131009fdbff4e35334da5b13a6c82475dd7bb4
--- /dev/null
+++ b/pfam_gap_rates/DED.gap.json
@@ -0,0 +1 @@
+{"family": "DED", "n_seqs": 326, "length": 84, "gap_rates": [0.3895705521472393, 0.3496932515337423, 0.15337423312883436, 0.0705521472392638, 0.046012269938650305, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03680981595092025, 0.03680981595092025, 0.03374233128834356, 0.03374233128834356, 0.03680981595092025, 0.03680981595092025, 0.03374233128834356, 0.03374233128834356, 0.027607361963190184, 0.027607361963190184, 0.027607361963190184, 0.015337423312883436, 0.015337423312883436, 0.9233128834355828, 0.015337423312883436, 0.015337423312883436, 0.015337423312883436, 0.015337423312883436, 0.049079754601226995, 0.05214723926380368, 0.8496932515337423, 0.018404907975460124, 0.015337423312883436, 0.024539877300613498, 0.0705521472392638, 0.06441717791411043, 0.1901840490797546, 0.03374233128834356, 0.012269938650306749, 0.009202453987730062, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003067484662576687, 0.0, 0.0, 0.0, 0.0, 0.006134969325153374, 0.03374233128834356, 0.049079754601226995, 0.049079754601226995, 0.03067484662576687, 0.012269938650306749, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.009202453987730062, 0.018404907975460124, 0.012269938650306749, 0.012269938650306749, 0.0950920245398773, 0.012269938650306749, 0.018404907975460124, 0.018404907975460124, 0.02147239263803681, 0.027607361963190184, 0.07668711656441718, 0.13190184049079753, 0.3312883435582822, 0.3803680981595092, 0.5337423312883436, 0.9141104294478528], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DFP.gap.json b/pfam_gap_rates/DFP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..adcb54dd34c6a817fb3c96f1e39e79981c617afa
--- /dev/null
+++ b/pfam_gap_rates/DFP.gap.json
@@ -0,0 +1 @@
+{"family": "DFP", "n_seqs": 2305, "length": 200, "gap_rates": [0.4386117136659436, 0.3175704989154013, 0.2563991323210412, 0.19783080260303687, 0.16399132321041215, 0.15140997830802602, 0.14490238611713666, 0.14490238611713666, 0.14490238611713666, 0.14490238611713666, 0.14446854663774403, 0.14446854663774403, 0.14446854663774403, 0.1440347071583514, 0.1440347071583514, 0.1440347071583514, 0.1440347071583514, 0.1440347071583514, 0.1440347071583514, 0.9462039045553146, 0.9462039045553146, 0.1440347071583514, 0.14316702819956617, 0.14316702819956617, 0.14316702819956617, 0.14316702819956617, 0.1436008676789588, 0.1436008676789588, 0.1436008676789588, 0.1436008676789588, 0.1436008676789588, 0.14316702819956617, 0.13882863340563992, 0.13882863340563992, 0.13882863340563992, 0.13926247288503255, 0.13926247288503255, 0.13926247288503255, 0.13969631236442517, 0.13969631236442517, 0.13882863340563992, 0.13926247288503255, 0.14013015184381777, 0.14099783080260303, 0.14143167028199566, 0.14099783080260303, 0.1418655097613883, 0.14143167028199566, 0.1405639913232104, 0.14013015184381777, 0.14013015184381777, 0.14273318872017354, 0.1440347071583514, 0.1470715835140998, 0.17744034707158352, 0.9488069414316703, 0.16442516268980478, 0.17483731019522777, 0.19219088937093276, 0.20997830802603037, 0.9418655097613883, 0.22386117136659436, 0.2386117136659436, 0.22169197396963122, 0.21258134490238612, 0.21171366594360086, 0.21084598698481563, 0.20997830802603037, 0.20780911062906723, 0.20563991323210412, 0.20477223427331886, 0.2004338394793926, 0.19739696312364424, 0.19436008676789587, 0.19088937093275488, 0.18828633405639914, 0.18524945770065077, 0.18524945770065077, 0.18177874186550977, 0.1787418655097614, 0.17396963123644252, 0.17093275488069415, 0.16789587852494578, 0.16616052060737527, 0.1509761388286334, 0.23080260303687636, 0.14099783080260303, 0.9453362255965293, 0.12928416485900218, 0.12841648590021693, 0.12537960954446856, 0.12407809110629067, 0.1227765726681128, 0.1227765726681128, 0.12234273318872017, 0.12234273318872017, 0.12234273318872017, 0.12147505422993492, 0.12147505422993492, 0.1210412147505423, 0.12190889370932755, 0.12190889370932755, 0.8989154013015185, 0.8963123644251627, 0.12147505422993492, 0.13622559652928418, 0.1440347071583514, 0.12364425162689804, 0.12364425162689804, 0.12494577006507593, 0.12407809110629067, 0.1245119305856833, 0.12494577006507593, 0.1383947939262473, 0.5709327548806942, 0.4841648590021692, 0.27939262472885035, 0.25509761388286334, 0.20433839479392624, 0.1405639913232104, 0.1301518438177874, 0.12537960954446856, 0.12494577006507593, 0.12537960954446856, 0.1245119305856833, 0.1245119305856833, 0.1245119305856833, 0.1245119305856833, 0.12494577006507593, 0.12494577006507593, 0.12494577006507593, 0.12494577006507593, 0.12494577006507593, 0.12537960954446856, 0.12537960954446856, 0.17830802603036877, 0.21127982646420823, 0.1665943600867679, 0.21084598698481563, 0.2572668112798265, 0.9462039045553146, 0.13882863340563992, 0.1336225596529284, 0.13058568329718004, 0.9392624728850325, 0.1266811279826464, 0.12581344902386118, 0.12537960954446856, 0.12537960954446856, 0.12581344902386118, 0.12581344902386118, 0.12581344902386118, 0.12624728850325379, 0.12841648590021693, 0.8811279826464208, 0.12711496746203904, 0.7865509761388286, 0.9483731019522776, 0.8780911062906724, 0.7566160520607376, 0.12885032537960955, 0.1301518438177874, 0.1279826464208243, 0.1266811279826464, 0.12624728850325379, 0.1266811279826464, 0.12754880694143167, 0.12711496746203904, 0.12841648590021693, 0.12841648590021693, 0.13535791757049892, 0.13101952277657267, 0.12885032537960955, 0.12928416485900218, 0.1301518438177874, 0.13101952277657267, 0.1314533622559653, 0.1314533622559653, 0.13188720173535792, 0.13188720173535792, 0.13232104121475055, 0.13318872017353578, 0.13405639913232104, 0.13579175704989155, 0.1470715835140998, 0.20433839479392624, 0.46073752711496746, 0.3475054229934924, 0.2950108459869848, 0.26941431670281996, 0.2720173535791757, 0.2789587852494577, 0.28156182212581343, 0.2841648590021692, 0.28633405639913234, 0.2898047722342733, 0.29327548806941434, 0.2993492407809111, 0.3136659436008677, 0.586117136659436], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DHC.gap.json b/pfam_gap_rates/DHC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d56423cc00c29eaa6a14ef5c17a968a7930c3937
--- /dev/null
+++ b/pfam_gap_rates/DHC.gap.json
@@ -0,0 +1 @@
+{"family": "DHC", "n_seqs": 138, "length": 126, "gap_rates": [0.1956521739130435, 0.07246376811594203, 0.036231884057971016, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.036231884057971016, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.2536231884057971, 0.07971014492753623, 0.07971014492753623, 0.08695652173913043, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.021739130434782608, 0.7463768115942029, 0.021739130434782608, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.014492753623188406, 0.021739130434782608, 0.014492753623188406, 0.014492753623188406, 0.021739130434782608, 0.021739130434782608, 0.036231884057971016, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.34057971014492755, 0.572463768115942, 0.644927536231884, 0.9492753623188406, 0.9202898550724637, 0.6086956521739131, 0.572463768115942, 0.5579710144927537, 0.5362318840579711, 0.5217391304347826, 0.5, 0.5072463768115942, 0.43478260869565216, 0.6811594202898551, 0.11594202898550725, 0.10869565217391304, 0.10144927536231885, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.9347826086956522, 0.08695652173913043, 0.10144927536231885, 0.10869565217391304, 0.08695652173913043, 0.36231884057971014, 0.36231884057971014, 0.36231884057971014, 0.36231884057971014, 0.36231884057971014, 0.8478260869565217, 0.11594202898550725, 0.10144927536231885, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09420289855072464, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09420289855072464, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.10144927536231885, 0.11594202898550725, 0.15942028985507245], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DHDPS.gap.json b/pfam_gap_rates/DHDPS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8c8a732bcbcbd5a5c737da88a64b5d4526718f9
--- /dev/null
+++ b/pfam_gap_rates/DHDPS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DIL.gap.json b/pfam_gap_rates/DIL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bcd2ba815f7bd2c691ebaac4309d17738ddecb06
--- /dev/null
+++ b/pfam_gap_rates/DIL.gap.json
@@ -0,0 +1 @@
+{"family": "DIL", "n_seqs": 881, "length": 129, "gap_rates": [0.22474460839954596, 0.08967082860385925, 0.06696935300794551, 0.05221339387060159, 0.04767309875141884, 0.04426787741203178, 0.043132803632236094, 0.04199772985244041, 0.04086265607264472, 0.039727582292849034, 0.036322360953461974, 0.036322360953461974, 0.0340522133938706, 0.03064699205448354, 0.02724177071509648, 0.026106696935300794, 0.028376844494892167, 0.026106696935300794, 0.026106696935300794, 0.028376844494892167, 0.0340522133938706, 0.026106696935300794, 0.02383654937570942, 0.9012485811577753, 0.94211123723042, 0.8978433598183881, 0.02043132803632236, 0.014755959137343927, 0.014755959137343927, 0.01362088535754824, 0.01021566401816118, 0.007945516458569807, 0.009080590238365494, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.01021566401816118, 0.009080590238365494, 0.01021566401816118, 0.009080590238365494, 0.009080590238365494, 0.009080590238365494, 0.009080590238365494, 0.009080590238365494, 0.009080590238365494, 0.02724177071509648, 0.021566401816118047, 0.056753688989784334, 0.9307604994324631, 0.7843359818388195, 0.07377979568671963, 0.37343927355278095, 0.046538024971623154, 0.5720771850170261, 0.8603859250851306, 0.8819523269012486, 0.887627695800227, 0.8910329171396141, 0.8921679909194098, 0.8955732122587968, 0.9035187287173666, 0.9137343927355278, 0.8989784335981839, 0.8921679909194098, 0.8910329171396141, 0.8887627695800226, 0.8830874006810443, 0.8785471055618616, 0.7775255391600454, 0.5402951191827469, 0.018161180476730987, 0.0170261066969353, 0.014755959137343927, 0.014755959137343927, 0.015891032917139614, 0.0170261066969353, 0.018161180476730987, 0.018161180476730987, 0.019296254256526674, 0.02043132803632236, 0.019296254256526674, 0.02043132803632236, 0.019296254256526674, 0.0170261066969353, 0.0170261066969353, 0.02043132803632236, 0.021566401816118047, 0.021566401816118047, 0.021566401816118047, 0.026106696935300794, 0.8410896708286039, 0.9443813847900113, 0.9125993189557321, 0.8286038592508513, 0.14074914869466515, 0.05902383654937571, 0.04880817253121453, 0.04426787741203178, 0.043132803632236094, 0.06242905788876277, 0.04086265607264472, 0.03745743473325766, 0.03859250851305335, 0.5629965947786606, 0.04199772985244041, 0.04086265607264472, 0.04086265607264472, 0.04086265607264472, 0.04199772985244041, 0.04540295119182747, 0.046538024971623154, 0.04540295119182747, 0.04540295119182747, 0.04540295119182747, 0.04540295119182747, 0.046538024971623154, 0.04880817253121453, 0.04767309875141884, 0.049943246311010214, 0.05561861520998865, 0.060158910329171394, 0.09307604994324631, 0.09761634506242906, 0.2122587968217934, 0.41316685584562995], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DKCLD.gap.json b/pfam_gap_rates/DKCLD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b72a182b081f8854afc7012375be5b04d6d2dbe
--- /dev/null
+++ b/pfam_gap_rates/DKCLD.gap.json
@@ -0,0 +1 @@
+{"family": "DKCLD", "n_seqs": 415, "length": 58, "gap_rates": [0.40963855421686746, 0.2385542168674699, 0.20240963855421687, 0.19759036144578312, 0.19518072289156627, 0.1855421686746988, 0.16626506024096385, 0.1686746987951807, 0.15903614457831325, 0.14216867469879518, 0.13493975903614458, 0.10843373493975904, 0.09397590361445783, 0.07951807228915662, 0.07228915662650602, 0.07228915662650602, 0.06987951807228916, 0.06746987951807229, 0.06746987951807229, 0.06506024096385542, 0.06506024096385542, 0.06506024096385542, 0.06265060240963856, 0.06265060240963856, 0.06265060240963856, 0.06506024096385542, 0.06506024096385542, 0.05783132530120482, 0.03855421686746988, 0.03614457831325301, 0.033734939759036145, 0.033734939759036145, 0.033734939759036145, 0.033734939759036145, 0.03132530120481928, 0.03132530120481928, 0.02650602409638554, 0.02650602409638554, 0.024096385542168676, 0.014457831325301205, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.00963855421686747, 0.00963855421686747, 0.01927710843373494, 0.10361445783132531], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DM4_12.gap.json b/pfam_gap_rates/DM4_12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc62369af55de99e1eb97ffb4e997402af3669eb
--- /dev/null
+++ b/pfam_gap_rates/DM4_12.gap.json
@@ -0,0 +1 @@
+{"family": "DM4_12", "n_seqs": 306, "length": 102, "gap_rates": [0.477124183006536, 0.4084967320261438, 0.32679738562091504, 0.27124183006535946, 0.24509803921568626, 0.20261437908496732, 0.1895424836601307, 0.16339869281045752, 0.1503267973856209, 0.1437908496732026, 0.13398692810457516, 0.12091503267973856, 0.1111111111111111, 0.09803921568627451, 0.06862745098039216, 0.058823529411764705, 0.05555555555555555, 0.9411764705882353, 0.0784313725490196, 0.013071895424836602, 0.00980392156862745, 0.006535947712418301, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.7843137254901961, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.016339869281045753, 0.06209150326797386, 0.8235294117647058, 0.9052287581699346, 0.738562091503268, 0.38562091503267976, 0.02287581699346405, 0.016339869281045753, 0.006535947712418301, 0.0032679738562091504, 0.006535947712418301, 0.016339869281045753, 0.934640522875817, 0.9444444444444444, 0.934640522875817, 0.0196078431372549, 0.016339869281045753, 0.0196078431372549, 0.016339869281045753, 0.0196078431372549, 0.7026143790849673, 0.049019607843137254, 0.08496732026143791, 0.08169934640522876, 0.0915032679738562, 0.10784313725490197, 0.3006535947712418, 0.3104575163398693, 0.7777777777777778, 0.9117647058823529, 0.9281045751633987, 0.8758169934640523, 0.6568627450980392, 0.2581699346405229, 0.22549019607843138, 0.1895424836601307, 0.46405228758169936, 0.17320261437908496, 0.10130718954248366, 0.21895424836601307, 0.09803921568627451, 0.09803921568627451, 0.09477124183006536, 0.09803921568627451, 0.09803921568627451, 0.10130718954248366, 0.12418300653594772, 0.11764705882352941, 0.12418300653594772, 0.13398692810457516, 0.19607843137254902, 0.8856209150326797, 0.24836601307189543, 0.2581699346405229, 0.9411764705882353, 0.13725490196078433, 0.10457516339869281, 0.10784313725490197, 0.11437908496732026, 0.12091503267973856, 0.12418300653594772, 0.14052287581699346, 0.16993464052287582, 0.17320261437908496], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DMA.gap.json b/pfam_gap_rates/DMA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ddf195d6d00e7011f46e071f79a630de291de16
--- /dev/null
+++ b/pfam_gap_rates/DMA.gap.json
@@ -0,0 +1 @@
+{"family": "DMA", "n_seqs": 113, "length": 37, "gap_rates": [0.40707964601769914, 0.24778761061946902, 0.17699115044247787, 0.061946902654867256, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.017699115044247787, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.02654867256637168, 0.02654867256637168, 0.04424778761061947, 0.168141592920354], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_beta_3.gap.json b/pfam_gap_rates/DNA_pol3_beta_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..887b8d2b1c438c0bc5b4faa93c98a8e1e8c21b5b
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_beta_3.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_beta_3", "n_seqs": 2361, "length": 125, "gap_rates": [0.7903430749682337, 0.20076238881829733, 0.09148665819567979, 0.07835662854722575, 0.07666243117323168, 0.06819144430326134, 0.05760271071579839, 0.04489623041084286, 0.037695891571368066, 0.033460398136382886, 0.02583650995340957, 0.018212621770436255, 0.014824227022448115, 0.013553578991952562, 0.012706480304955527, 0.011012282930961457, 0.009318085556967387, 0.008894536213468869, 0.008894536213468869, 0.00847098686997035, 0.00847098686997035, 0.008047437526471834, 0.008047437526471834, 0.008047437526471834, 0.008894536213468869, 0.00847098686997035, 0.008047437526471834, 0.008047437526471834, 0.007200338839474798, 0.007200338839474798, 0.1329944938585345, 0.7496823379923762, 0.08470986869970351, 0.022871664548919948, 0.01905972045743329, 0.01397712833545108, 0.006776789495976281, 0.006776789495976281, 0.005506141465480729, 0.005506141465480729, 0.005082592121982211, 0.005082592121982211, 0.005082592121982211, 0.8691232528589581, 0.8005082592121983, 0.005082592121982211, 0.004659042778483694, 0.0038119440914866584, 0.0038119440914866584, 0.0038119440914866584, 0.004235493434985175, 0.004659042778483694, 0.008894536213468869, 0.018636171113934775, 0.05252011859381618, 0.05252011859381618, 0.020330368487928845, 0.005082592121982211, 0.0033883947479881405, 0.005082592121982211, 0.002964845404489623, 0.002964845404489623, 0.002964845404489623, 0.002964845404489623, 0.002964845404489623, 0.0033883947479881405, 0.0033883947479881405, 0.004235493434985175, 0.0033883947479881405, 0.005082592121982211, 0.8225328250741212, 0.006776789495976281, 0.0038119440914866584, 0.0025412960609911056, 0.0038119440914866584, 0.0033883947479881405, 0.002964845404489623, 0.002964845404489623, 0.0021177467174925877, 0.0021177467174925877, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.002964845404489623, 0.0038119440914866584, 0.007200338839474798, 0.013130029648454045, 0.006776789495976281, 0.0033883947479881405, 0.002964845404489623, 0.0025412960609911056, 0.0033883947479881405, 0.0033883947479881405, 0.0033883947479881405, 0.0038119440914866584, 0.004235493434985175, 0.005929690808979246, 0.014824227022448115, 0.008047437526471834, 0.0169419737399407, 0.017789072426937738, 0.018212621770436255, 0.020330368487928845, 0.03261329944938585, 0.052096569250317665, 0.062261753494282084, 0.07327403642524354, 0.07750952986022872, 0.09191020753917832, 0.10758153324862346, 0.13468869123252858, 0.11774671749258789, 0.11986446421008047, 0.12452350698856417, 0.13172384582803898, 0.16010165184243966, 0.1927149512918255, 0.4430326132994494], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_delta.gap.json b/pfam_gap_rates/DNA_pol3_delta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fafd6dd5d5b88cdec39a247de7f3afafa966e91c
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_delta.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_delta", "n_seqs": 1716, "length": 187, "gap_rates": [0.3613053613053613, 0.14743589743589744, 0.11596736596736597, 0.10897435897435898, 0.10431235431235432, 0.10139860139860139, 0.09848484848484848, 0.09324009324009325, 0.09032634032634032, 0.09207459207459208, 0.09149184149184149, 0.087995337995338, 0.0844988344988345, 0.08275058275058275, 0.08216783216783216, 0.08100233100233101, 0.07692307692307693, 0.07867132867132867, 0.07634032634032634, 0.07284382284382285, 0.07342657342657342, 0.27855477855477856, 0.12762237762237763, 0.11130536130536131, 0.087995337995338, 0.08041958041958042, 0.07109557109557109, 0.06701631701631702, 0.06468531468531469, 0.06177156177156177, 0.05827505827505827, 0.051864801864801864, 0.050699300699300696, 0.04895104895104895, 0.0472027972027972, 0.045454545454545456, 0.04487179487179487, 0.04079254079254079, 0.04195804195804196, 0.08916083916083917, 0.07109557109557109, 0.0472027972027972, 0.0472027972027972, 0.27797202797202797, 0.8846153846153846, 0.04487179487179487, 0.027972027972027972, 0.024475524475524476, 0.02156177156177156, 0.020396270396270396, 0.019813519813519812, 0.018065268065268064, 0.017482517482517484, 0.017482517482517484, 0.0168997668997669, 0.016317016317016316, 0.016317016317016316, 0.019813519813519812, 0.0168997668997669, 0.015151515151515152, 0.015734265734265736, 0.015734265734265736, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.014568764568764568, 0.015151515151515152, 0.541958041958042, 0.5407925407925408, 0.5856643356643356, 0.6928904428904429, 0.828088578088578, 0.9353146853146853, 0.7558275058275058, 0.6672494172494172, 0.3344988344988345, 0.21503496503496503, 0.24766899766899766, 0.13636363636363635, 0.09207459207459208, 0.053613053613053616, 0.030885780885780884, 0.022727272727272728, 0.019813519813519812, 0.017482517482517484, 0.015734265734265736, 0.016317016317016316, 0.018648018648018648, 0.017482517482517484, 0.018648018648018648, 0.018648018648018648, 0.017482517482517484, 0.015151515151515152, 0.06177156177156177, 0.0337995337995338, 0.024475524475524476, 0.013986013986013986, 0.015151515151515152, 0.015734265734265736, 0.013986013986013986, 0.013403263403263404, 0.01282051282051282, 0.013403263403263404, 0.015734265734265736, 0.013986013986013986, 0.6392773892773893, 0.43065268065268064, 0.037296037296037296, 0.02564102564102564, 0.022727272727272728, 0.04895104895104895, 0.02564102564102564, 0.022144522144522144, 0.016317016317016316, 0.7721445221445221, 0.8065268065268065, 0.7284382284382285, 0.013986013986013986, 0.0168997668997669, 0.015734265734265736, 0.016317016317016316, 0.0168997668997669, 0.015734265734265736, 0.0337995337995338, 0.9224941724941725, 0.8613053613053613, 0.03787878787878788, 0.023892773892773892, 0.019813519813519812, 0.046620046620046623, 0.022727272727272728, 0.018648018648018648, 0.0168997668997669, 0.014568764568764568, 0.0168997668997669, 0.015734265734265736, 0.9242424242424242, 0.9318181818181818, 0.8618881118881119, 0.016317016317016316, 0.017482517482517484, 0.014568764568764568, 0.014568764568764568, 0.014568764568764568, 0.013986013986013986, 0.013986013986013986, 0.013403263403263404, 0.013403263403263404, 0.013403263403263404, 0.013403263403263404, 0.013403263403263404, 0.013403263403263404, 0.015734265734265736, 0.02505827505827506, 0.02505827505827506, 0.02097902097902098, 0.018648018648018648, 0.0168997668997669, 0.015734265734265736, 0.016317016317016316, 0.015734265734265736, 0.0168997668997669, 0.016317016317016316, 0.0168997668997669, 0.016317016317016316, 0.017482517482517484, 0.0168997668997669, 0.017482517482517484, 0.018648018648018648, 0.02097902097902098, 0.023892773892773892, 0.026223776223776224, 0.03671328671328671, 0.037296037296037296, 0.03904428904428905, 0.04020979020979021, 0.04195804195804196, 0.042540792540792544, 0.04487179487179487, 0.047785547785547784, 0.05652680652680653, 0.07867132867132867, 0.08682983682983683, 0.09382284382284382, 0.11013986013986014, 0.25, 0.6142191142191142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_delta2.gap.json b/pfam_gap_rates/DNA_pol3_delta2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc2c5469fb290937df2ef73cb94dc9be095ced7a
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_delta2.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_delta2", "n_seqs": 4922, "length": 200, "gap_rates": [0.5627793579845591, 0.3659081674116213, 0.31653799268590005, 0.2842340511986997, 0.25335229581470947, 0.23445753758634702, 0.21292157659488012, 0.20174725721251524, 0.18915075172694026, 0.1854937017472572, 0.18163348232425844, 0.17878911011783827, 0.17391304347826086, 0.1653799268590004, 0.15197074360016252, 0.1389678992279561, 0.13043478260869565, 0.12332385209264526, 0.11458756603006907, 0.113165379926859, 0.16863063795205202, 0.10503860219422999, 0.10138155221454694, 0.10097521332791548, 0.10097521332791548, 0.10056887444128403, 0.10422592442096709, 0.10321007720438846, 0.10361641609101992, 0.10300690776107274, 0.10138155221454694, 0.10016253555465258, 0.09894351889475823, 0.09934985778138967, 0.09894351889475823, 0.09934985778138967, 0.09833401056481106, 0.09833401056481106, 0.09772450223486388, 0.09772450223486388, 0.0979276716781796, 0.09813084112149532, 0.09853718000812678, 0.09853718000812678, 0.0987403494514425, 0.09934985778138967, 0.0987403494514425, 0.10138155221454694, 0.10585127996749288, 0.15359609914668834, 0.1694433157253149, 0.30211296221048356, 0.7931735067045916, 0.8482324258431532, 0.917919544900447, 0.9384396586753352, 0.9321414059325478, 0.8744412840308817, 0.8254774481917919, 0.7017472572125152, 0.20438845997561966, 0.18813490451036163, 0.17513206013815522, 0.1684274685087363, 0.16192604632263308, 0.15298659081674115, 0.14953271028037382, 0.14425030475416498, 0.1373425436814303, 0.13104429093864284, 0.12576188541243397, 0.1180414465664364, 0.11093051605038602, 0.1011783827712312, 0.09325477448191792, 0.08553433563592036, 0.08126777732629012, 0.076188541243397, 0.07436001625355547, 0.07456318569687119, 0.07354733848029256, 0.07232832182039821, 0.8839902478667209, 0.8935392117025599, 0.9303128809427063, 0.9022754977651362, 0.8872409589597724, 0.8829744006501422, 0.07151564404713531, 0.11296221048354327, 0.11296221048354327, 0.11600975213327916, 0.12210483543275091, 0.7728565623730191, 0.6373425436814303, 0.8819585534335636, 0.8843965867533523, 0.899431125558716, 0.9059325477448191, 0.9095895977245022, 0.9187322226737099, 0.9219829337667614, 0.926046322633076, 0.929703372612759, 0.9325477448191792, 0.9455505891913856, 0.9488013002844372, 0.9469727752945957, 0.9439252336448598, 0.9311255587159691, 0.9276716781796018, 0.923811458756603, 0.9197480698902885, 0.9138561560341325, 0.9079642421779764, 0.9041040227549777, 0.8890694839496139, 0.8825680617635108, 0.8807395367736692, 0.4595692807801707, 0.04429093864282812, 0.030678585940674522, 0.028850060950832996, 0.02783421373425437, 0.026615197074360015, 0.025599349857781388, 0.025599349857781388, 0.02478667208451849, 0.024583502641202765, 0.024380333197887037, 0.02478667208451849, 0.024583502641202765, 0.023770824867939862, 0.023770824867939862, 0.02478667208451849, 0.026818366517675742, 0.02763104429093864, 0.03250711093051605, 0.0337261275904104, 0.02641202763104429, 0.022348638764729784, 0.018488419341731004, 0.015237708248679399, 0.014425030475416498, 0.013409183258837871, 0.01259650548557497, 0.01259650548557497, 0.015847216578626575, 0.019707436001625354, 0.016253555465258026, 0.0160503860219423, 0.01381552214546932, 0.01259650548557497, 0.01300284437220642, 0.013409183258837871, 0.01259650548557497, 0.01645672490857375, 0.01259650548557497, 0.01300284437220642, 0.012393336042259244, 0.012393336042259244, 0.01259650548557497, 0.01259650548557497, 0.01300284437220642, 0.013206013815522145, 0.013206013815522145, 0.013206013815522145, 0.013206013815522145, 0.025396180414465664, 0.01381552214546932, 0.01381552214546932, 0.01381552214546932, 0.014221861032100772, 0.014221861032100772, 0.014628199918732222, 0.014628199918732222, 0.014628199918732222, 0.015237708248679399, 0.01564404713531085, 0.016253555465258026, 0.0168630637952052, 0.015847216578626575, 0.019301097114993906, 0.0160503860219423, 0.0160503860219423, 0.016253555465258026, 0.016253555465258026, 0.017066233238520925, 0.017066233238520925, 0.017269402681836653, 0.0176757415684681, 0.017878911011783828, 0.019707436001625354, 0.023973994311255586, 0.032303941487200324, 0.04530678585940674, 0.0707029662738724, 0.152377082486794, 0.30800487606663957, 0.47622917513206015], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_B_thumb.gap.json b/pfam_gap_rates/DNA_pol_B_thumb.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20320354fc237e6f5c9f863a4b4071e122527a07
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_B_thumb.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol_B_thumb", "n_seqs": 899, "length": 96, "gap_rates": [0.3147942157953281, 0.048943270300333706, 0.026696329254727477, 0.025583982202447165, 0.02224694104560623, 0.017797552836484983, 0.01668520578420467, 0.01557285873192436, 0.01557285873192436, 0.013348164627363738, 0.012235817575083427, 0.012235817575083427, 0.012235817575083427, 0.010011123470522803, 0.010011123470522803, 0.008898776418242492, 0.00778642936596218, 0.00778642936596218, 0.006674082313681869, 0.006674082313681869, 0.0055617352614015575, 0.0033370411568409346, 0.8542825361512792, 0.002224694104560623, 0.002224694104560623, 0.002224694104560623, 0.0033370411568409346, 0.0033370411568409346, 0.0033370411568409346, 0.0055617352614015575, 0.0033370411568409346, 0.0033370411568409346, 0.004449388209121246, 0.914349276974416, 0.6507230255839822, 0.7185761957730812, 0.746384872080089, 0.8809788654060067, 0.9165739710789766, 0.9254727474972191, 0.9299221357063404, 0.9410456062291435, 0.949944382647386, 0.946607341490545, 0.9332591768631813, 0.9276974416017798, 0.9199110122358176, 0.9010011123470523, 0.7986651835372637, 0.731924360400445, 0.7085650723025584, 0.6162402669632926, 0.6295884315906563, 0.5939933259176863, 0.5706340378197998, 0.2825361512791991, 0.2347052280311457, 0.04671857619577308, 0.0389321468298109, 0.041156840934371525, 0.024471635150166853, 0.932146829810901, 0.949944382647386, 0.9110122358175751, 0.025583982202447165, 0.02224694104560623, 0.9299221357063404, 0.9377085650723026, 0.9454949944382648, 0.9477196885428254, 0.9421579532814238, 0.9365962180200222, 0.9199110122358176, 0.02335928809788654, 0.020022246941045607, 0.012235817575083427, 0.013348164627363738, 0.013348164627363738, 0.013348164627363738, 0.013348164627363738, 0.013348164627363738, 0.013348164627363738, 0.014460511679644048, 0.014460511679644048, 0.01557285873192436, 0.017797552836484983, 0.020022246941045607, 0.021134593993325918, 0.02224694104560623, 0.026696329254727477, 0.03114571746384872, 0.03114571746384872, 0.03114571746384872, 0.03225806451612903, 0.03225806451612903, 0.21690767519466073], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNase_II.gap.json b/pfam_gap_rates/DNase_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b1e9fedd99d7cb866151e2c864932f46c6dd598
--- /dev/null
+++ b/pfam_gap_rates/DNase_II.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DOT1.gap.json b/pfam_gap_rates/DOT1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca691baa7ede26832182e29df98a94c4512f7581
--- /dev/null
+++ b/pfam_gap_rates/DOT1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DPM3.gap.json b/pfam_gap_rates/DPM3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ca053681c9c9e884a03e014048e7f1a6be3b8f6
--- /dev/null
+++ b/pfam_gap_rates/DPM3.gap.json
@@ -0,0 +1 @@
+{"family": "DPM3", "n_seqs": 231, "length": 94, "gap_rates": [0.24242424242424243, 0.22510822510822512, 0.21212121212121213, 0.20346320346320346, 0.17316017316017315, 0.16883116883116883, 0.1645021645021645, 0.15151515151515152, 0.1471861471861472, 0.12554112554112554, 0.10822510822510822, 0.1038961038961039, 0.09956709956709957, 0.09956709956709957, 0.09523809523809523, 0.09523809523809523, 0.08658008658008658, 0.08225108225108226, 0.08225108225108226, 0.08225108225108226, 0.08225108225108226, 0.08225108225108226, 0.08225108225108226, 0.08225108225108226, 0.07792207792207792, 0.07792207792207792, 0.26406926406926406, 0.26406926406926406, 0.2597402597402597, 0.935064935064935, 0.6233766233766234, 0.8744588744588745, 0.8528138528138528, 0.27705627705627706, 0.22077922077922077, 0.1038961038961039, 0.09956709956709957, 0.08658008658008658, 0.08225108225108226, 0.06926406926406926, 0.06493506493506493, 0.05627705627705628, 0.05194805194805195, 0.03463203463203463, 0.03463203463203463, 0.03463203463203463, 0.025974025974025976, 0.025974025974025976, 0.030303030303030304, 0.025974025974025976, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.008658008658008658, 0.008658008658008658, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.021645021645021644, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.04329004329004329, 0.047619047619047616, 0.047619047619047616, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05627705627705628, 0.06926406926406926, 0.09523809523809523, 0.47186147186147187], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DRY_EERY.gap.json b/pfam_gap_rates/DRY_EERY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c59300b58df919ea8b5816d942259a30cd48ba07
--- /dev/null
+++ b/pfam_gap_rates/DRY_EERY.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DTW.gap.json b/pfam_gap_rates/DTW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65437b05e41816d55b441d359b425b17bb39495c
--- /dev/null
+++ b/pfam_gap_rates/DTW.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1043.gap.json b/pfam_gap_rates/DUF1043.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6d05ba396b6e0971be367555e64da950b5fb32e
--- /dev/null
+++ b/pfam_gap_rates/DUF1043.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1043", "n_seqs": 123, "length": 147, "gap_rates": [0.6991869918699187, 0.35772357723577236, 0.23577235772357724, 0.08943089430894309, 0.056910569105691054, 0.04065040650406504, 0.04065040650406504, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.032520325203252036, 0.04878048780487805, 0.04065040650406504, 0.04065040650406504, 0.032520325203252036, 0.24390243902439024, 0.13821138211382114, 0.056910569105691054, 0.04878048780487805, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.04065040650406504, 0.07317073170731707, 0.07317073170731707, 0.04878048780487805, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.7479674796747967, 0.7560975609756098, 0.7723577235772358, 0.7723577235772358, 0.8048780487804879, 0.8536585365853658, 0.926829268292683, 0.943089430894309, 0.9105691056910569, 0.8373983739837398, 0.7886178861788617, 0.7723577235772358, 0.7642276422764228, 0.7560975609756098, 0.7479674796747967, 0.04065040650406504, 0.15447154471544716, 0.6910569105691057, 0.11382113821138211, 0.10569105691056911, 0.10569105691056911, 0.12195121951219512, 0.0975609756097561, 0.0975609756097561, 0.08943089430894309, 0.0975609756097561, 0.0975609756097561, 0.13821138211382114, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.13821138211382114, 0.16260162601626016, 0.17073170731707318, 0.2032520325203252, 0.2682926829268293, 0.25203252032520324, 0.22764227642276422, 0.22764227642276422, 0.7235772357723578, 0.8373983739837398, 0.8943089430894309, 0.9186991869918699, 0.943089430894309, 0.9186991869918699, 0.8699186991869918, 0.7723577235772358, 0.6422764227642277, 0.17073170731707318, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.17073170731707318, 0.17073170731707318, 0.17073170731707318, 0.17886178861788618, 0.1951219512195122, 0.1951219512195122, 0.23577235772357724, 0.36585365853658536, 0.45528455284552843, 0.5040650406504065, 0.5203252032520326, 0.5528455284552846], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1049.gap.json b/pfam_gap_rates/DUF1049.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74261561f8d631f05e21240031ceb4fefe33fdc8
--- /dev/null
+++ b/pfam_gap_rates/DUF1049.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1049", "n_seqs": 996, "length": 68, "gap_rates": [0.5401606425702812, 0.18072289156626506, 0.17269076305220885, 0.1495983935742972, 0.13052208835341367, 0.11947791164658635, 0.10441767068273092, 0.0963855421686747, 0.09538152610441768, 0.09337349397590361, 0.08734939759036145, 0.9267068273092369, 0.8313253012048193, 0.07530120481927711, 0.07530120481927711, 0.05622489959839357, 0.9176706827309237, 0.03614457831325301, 0.7670682730923695, 0.015060240963855422, 0.01104417670682731, 0.010040160642570281, 0.008032128514056224, 0.0030120481927710845, 0.002008032128514056, 0.001004016064257028, 0.0, 0.0, 0.0, 0.0, 0.0030120481927710845, 0.0, 0.0, 0.001004016064257028, 0.001004016064257028, 0.001004016064257028, 0.001004016064257028, 0.002008032128514056, 0.002008032128514056, 0.002008032128514056, 0.0050200803212851405, 0.0321285140562249, 0.050200803212851405, 0.06827309236947791, 0.11746987951807229, 0.1144578313253012, 0.10542168674698796, 0.09337349397590361, 0.10040160642570281, 0.10140562248995984, 0.11345381526104417, 0.12650602409638553, 0.13253012048192772, 0.14156626506024098, 0.1566265060240964, 0.19377510040160642, 0.22389558232931728, 0.2399598393574297, 0.2680722891566265, 0.2971887550200803, 0.3172690763052209, 0.3433734939759036, 0.37650602409638556, 0.40763052208835343, 0.4528112449799197, 0.5080321285140562, 0.6004016064257028, 0.9096385542168675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1189.gap.json b/pfam_gap_rates/DUF1189.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f861379858bafcac9f70eb9a1490c0727f9cdfb1
--- /dev/null
+++ b/pfam_gap_rates/DUF1189.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1246.gap.json b/pfam_gap_rates/DUF1246.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f32f2494f3722b525b83c1532719baeb00997f29
--- /dev/null
+++ b/pfam_gap_rates/DUF1246.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1254.gap.json b/pfam_gap_rates/DUF1254.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92a8d63ed7f7debf8405d911b04db62de552f294
--- /dev/null
+++ b/pfam_gap_rates/DUF1254.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1257.gap.json b/pfam_gap_rates/DUF1257.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa42eee283d5d444dc7db76f44c427d41138cdd6
--- /dev/null
+++ b/pfam_gap_rates/DUF1257.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1269.gap.json b/pfam_gap_rates/DUF1269.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a175d5dc2f2b89d96aebb673c2b87db381d1328
--- /dev/null
+++ b/pfam_gap_rates/DUF1269.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1269", "n_seqs": 231, "length": 109, "gap_rates": [0.44155844155844154, 0.2683982683982684, 0.12987012987012986, 0.09956709956709957, 0.0735930735930736, 0.06060606060606061, 0.06060606060606061, 0.05627705627705628, 0.05627705627705628, 0.05627705627705628, 0.05194805194805195, 0.047619047619047616, 0.03896103896103896, 0.12554112554112554, 0.1038961038961039, 0.1471861471861472, 0.03896103896103896, 0.025974025974025976, 0.9134199134199135, 0.8831168831168831, 0.15151515151515152, 0.012987012987012988, 0.025974025974025976, 0.8744588744588745, 0.8831168831168831, 0.8787878787878788, 0.8354978354978355, 0.017316017316017316, 0.008658008658008658, 0.008658008658008658, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.008658008658008658, 0.012987012987012988, 0.021645021645021644, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.9393939393939394, 0.012987012987012988, 0.012987012987012988, 0.047619047619047616, 0.008658008658008658, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.025974025974025976, 0.012987012987012988, 0.008658008658008658, 0.012987012987012988, 0.008658008658008658, 0.004329004329004329, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.021645021645021644, 0.025974025974025976, 0.948051948051948, 0.03896103896103896, 0.030303030303030304, 0.047619047619047616, 0.06060606060606061, 0.9307359307359307, 0.9134199134199135, 0.11688311688311688, 0.10822510822510822, 0.11688311688311688, 0.12121212121212122, 0.13852813852813853, 0.13852813852813853, 0.15151515151515152, 0.16017316017316016, 0.1774891774891775, 0.19480519480519481, 0.20346320346320346, 0.2077922077922078, 0.22077922077922077, 0.23376623376623376, 0.2510822510822511, 0.2597402597402597, 0.2813852813852814, 0.29004329004329005, 0.31601731601731603, 0.36363636363636365], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1272.gap.json b/pfam_gap_rates/DUF1272.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80a389289e58000a3972a4896a4e65ac27cf2f6f
--- /dev/null
+++ b/pfam_gap_rates/DUF1272.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1272", "n_seqs": 110, "length": 57, "gap_rates": [0.07272727272727272, 0.02727272727272727, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.11818181818181818, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3181818181818182, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.06363636363636363], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1336.gap.json b/pfam_gap_rates/DUF1336.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..339b7a14caa694fffb743fb64d2b0dd414784783
--- /dev/null
+++ b/pfam_gap_rates/DUF1336.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1409.gap.json b/pfam_gap_rates/DUF1409.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc667607f4f758f3829c27428c89b8d032967a9f
--- /dev/null
+++ b/pfam_gap_rates/DUF1409.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1409", "n_seqs": 186, "length": 57, "gap_rates": [0.3225806451612903, 0.20967741935483872, 0.1935483870967742, 0.1881720430107527, 0.5268817204301075, 0.1774193548387097, 0.17204301075268819, 0.17204301075268819, 0.17204301075268819, 0.17204301075268819, 0.16666666666666666, 0.16129032258064516, 0.16129032258064516, 0.17204301075268819, 0.1774193548387097, 0.1774193548387097, 0.1774193548387097, 0.13440860215053763, 0.053763440860215055, 0.03763440860215054, 0.03763440860215054, 0.03225806451612903, 0.03225806451612903, 0.021505376344086023, 0.010752688172043012, 0.010752688172043012, 0.016129032258064516, 0.010752688172043012, 0.010752688172043012, 0.8279569892473119, 0.8279569892473119, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.8333333333333334, 0.8387096774193549, 0.8387096774193549, 0.8387096774193549, 0.8387096774193549, 0.8333333333333334, 0.03763440860215054, 0.043010752688172046, 0.043010752688172046, 0.03225806451612903, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.053763440860215055, 0.06989247311827956, 0.10215053763440861], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1421.gap.json b/pfam_gap_rates/DUF1421.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90caf2d5f462a5a8387b4e84be2e70be5d73d511
--- /dev/null
+++ b/pfam_gap_rates/DUF1421.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1427.gap.json b/pfam_gap_rates/DUF1427.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f4f17eedbd0962568aeb42754da70410cb5b980
--- /dev/null
+++ b/pfam_gap_rates/DUF1427.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1427", "n_seqs": 101, "length": 84, "gap_rates": [0.5346534653465347, 0.42574257425742573, 0.26732673267326734, 0.0297029702970297, 0.0297029702970297, 0.009900990099009901, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8910891089108911, 0.0, 0.7128712871287128, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06930693069306931, 0.09900990099009901, 0.13861386138613863, 0.21782178217821782, 0.31683168316831684, 0.3564356435643564, 0.38613861386138615, 0.42574257425742573, 0.43564356435643564, 0.43564356435643564, 0.44554455445544555, 0.4752475247524752, 0.504950495049505, 0.5247524752475248, 0.5346534653465347, 0.5346534653465347, 0.594059405940594, 0.5841584158415841, 0.5445544554455446, 0.5445544554455446, 0.5544554455445545, 0.5544554455445545, 0.6138613861386139, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.6138613861386139, 0.6336633663366337, 0.6534653465346535, 0.6831683168316832, 0.8217821782178217, 0.9108910891089109], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1450.gap.json b/pfam_gap_rates/DUF1450.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e57d9dd0522293fa54c80b541f7fe6002b3c2b00
--- /dev/null
+++ b/pfam_gap_rates/DUF1450.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1465.gap.json b/pfam_gap_rates/DUF1465.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f29c15638d4135c6605d48b07685186204294dc6
--- /dev/null
+++ b/pfam_gap_rates/DUF1465.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1465", "n_seqs": 104, "length": 160, "gap_rates": [0.625, 0.36538461538461536, 0.2692307692307692, 0.18269230769230768, 0.15384615384615385, 0.1346153846153846, 0.10576923076923077, 0.057692307692307696, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.0, 0.9326923076923077, 0.009615384615384616, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009615384615384616, 0.0, 0.0, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.22115384615384615, 0.2403846153846154, 0.38461538461538464, 0.019230769230769232, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.038461538461538464, 0.057692307692307696, 0.10576923076923077, 0.10576923076923077, 0.125, 0.15384615384615385, 0.2980769230769231, 0.34615384615384615, 0.4423076923076923, 0.7307692307692307, 0.8846153846153846, 0.9326923076923077, 0.8173076923076923, 0.625, 0.20192307692307693, 0.16346153846153846, 0.15384615384615385, 0.15384615384615385, 0.16346153846153846, 0.16346153846153846, 0.16346153846153846, 0.16346153846153846, 0.16346153846153846, 0.16346153846153846, 0.16346153846153846, 0.18269230769230768, 0.18269230769230768, 0.25961538461538464, 0.3173076923076923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1538.gap.json b/pfam_gap_rates/DUF1538.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0dfe6461e0a16d813416347ca4d329b29a5068b
--- /dev/null
+++ b/pfam_gap_rates/DUF1538.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1538", "n_seqs": 570, "length": 240, "gap_rates": [0.3368421052631579, 0.14385964912280702, 0.08596491228070176, 0.07017543859649122, 0.06666666666666667, 0.06315789473684211, 0.06315789473684211, 0.06315789473684211, 0.06315789473684211, 0.05964912280701754, 0.05964912280701754, 0.06140350877192982, 0.05789473684210526, 0.05789473684210526, 0.056140350877192984, 0.054385964912280704, 0.05087719298245614, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.0456140350877193, 0.04035087719298246, 0.04035087719298246, 0.03859649122807018, 0.03859649122807018, 0.03684210526315789, 0.03508771929824561, 0.03508771929824561, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.02982456140350877, 0.02982456140350877, 0.02982456140350877, 0.02982456140350877, 0.028070175438596492, 0.028070175438596492, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1541.gap.json b/pfam_gap_rates/DUF1541.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fb29be1e7644cb1859b52af33370da87b5cc4fc
--- /dev/null
+++ b/pfam_gap_rates/DUF1541.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1541", "n_seqs": 206, "length": 52, "gap_rates": [0.19902912621359223, 0.038834951456310676, 0.019417475728155338, 0.014563106796116505, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0048543689320388345, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.15048543689320387, 0.10679611650485436, 0.0048543689320388345, 0.0048543689320388345, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.009708737864077669, 0.11650485436893204], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1614.gap.json b/pfam_gap_rates/DUF1614.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..593813fa5e211fa12d41232c21bf84da591d3df3
--- /dev/null
+++ b/pfam_gap_rates/DUF1614.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1620.gap.json b/pfam_gap_rates/DUF1620.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..facdb7c53ea0221616a243009414cf773b1ed600
--- /dev/null
+++ b/pfam_gap_rates/DUF1620.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1620", "n_seqs": 325, "length": 254, "gap_rates": [0.29846153846153844, 0.09846153846153846, 0.09538461538461539, 0.09538461538461539, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.08923076923076922, 0.08923076923076922, 0.08923076923076922, 0.6892307692307692, 0.7415384615384616, 0.8276923076923077, 0.8707692307692307, 0.88, 0.8646153846153846, 0.7661538461538462, 0.72, 0.6215384615384615, 0.08923076923076922, 0.09230769230769231, 0.08615384615384615, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.09846153846153846, 0.09230769230769231, 0.08615384615384615, 0.12, 0.12, 0.18461538461538463, 0.40307692307692305, 0.39076923076923076, 0.3569230769230769, 0.7323076923076923, 0.7692307692307693, 0.8553846153846154, 0.9015384615384615, 0.9230769230769231, 0.9384615384615385, 0.9323076923076923, 0.92, 0.88, 0.8307692307692308, 0.7384615384615385, 0.7169230769230769, 0.3292307692307692, 0.4153846153846154, 0.4, 0.3323076923076923, 0.3046153846153846, 0.28923076923076924, 0.25846153846153846, 0.18461538461538463, 0.6953846153846154, 0.7661538461538462, 0.8092307692307692, 0.8984615384615384, 0.7938461538461539, 0.7261538461538461, 0.6307692307692307, 0.18769230769230769, 0.1076923076923077, 0.10461538461538461, 0.10461538461538461, 0.08615384615384615, 0.08307692307692308, 0.8738461538461538, 0.8523076923076923, 0.08307692307692308, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08, 0.08, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08307692307692308, 0.08923076923076922, 0.08923076923076922, 0.08923076923076922, 0.08923076923076922, 0.08615384615384615, 0.08307692307692308, 0.08615384615384615, 0.08923076923076922, 0.09538461538461539, 0.7876923076923077, 0.09846153846153846, 0.09230769230769231, 0.09846153846153846, 0.09230769230769231, 0.08923076923076922, 0.08615384615384615, 0.08307692307692308, 0.08, 0.08307692307692308, 0.08615384615384615, 0.08307692307692308, 0.08615384615384615, 0.09538461538461539, 0.09538461538461539, 0.09538461538461539, 0.09846153846153846, 0.09538461538461539, 0.09846153846153846, 0.09846153846153846, 0.09846153846153846, 0.09846153846153846, 0.09846153846153846, 0.9292307692307692, 0.9415384615384615, 0.9384615384615385, 0.6953846153846154, 0.4553846153846154, 0.16615384615384615, 0.15692307692307692, 0.15692307692307692, 0.13538461538461538, 0.12615384615384614, 0.09846153846153846, 0.92, 0.9476923076923077, 0.9353846153846154, 0.9107692307692308, 0.08615384615384615, 0.09230769230769231, 0.9076923076923077, 0.09230769230769231, 0.08923076923076922, 0.08615384615384615, 0.08307692307692308, 0.08307692307692308, 0.1076923076923077, 0.10153846153846154, 0.10461538461538461, 0.11692307692307692, 0.08, 0.07692307692307693, 0.07384615384615385, 0.07384615384615385, 0.06769230769230769, 0.06153846153846154, 0.06153846153846154, 0.05846153846153846, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06769230769230769, 0.05846153846153846, 0.055384615384615386, 0.08, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.055384615384615386, 0.055384615384615386, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.052307692307692305, 0.052307692307692305, 0.052307692307692305, 0.052307692307692305, 0.052307692307692305, 0.05846153846153846, 0.9292307692307692, 0.05846153846153846, 0.06153846153846154, 0.055384615384615386, 0.05846153846153846, 0.05846153846153846, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06461538461538462, 0.06153846153846154, 0.06153846153846154, 0.06769230769230769, 0.06769230769230769, 0.07076923076923076, 0.07076923076923076, 0.07692307692307693, 0.08307692307692308, 0.08, 0.08615384615384615, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08307692307692308, 0.08615384615384615, 0.08615384615384615, 0.08615384615384615, 0.08615384615384615, 0.09230769230769231, 0.09538461538461539, 0.09846153846153846, 0.1076923076923077, 0.11692307692307692, 0.12923076923076923, 0.13230769230769232, 0.14153846153846153, 0.14461538461538462, 0.1476923076923077, 0.15076923076923077, 0.15692307692307692, 0.1723076923076923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1645.gap.json b/pfam_gap_rates/DUF1645.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e04903b2bf3e6bd3f4dd34e8ed6b28f77bd0d99
--- /dev/null
+++ b/pfam_gap_rates/DUF1645.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1659.gap.json b/pfam_gap_rates/DUF1659.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22370e5342913c63b8088007e86e1d8eb285b46a
--- /dev/null
+++ b/pfam_gap_rates/DUF1659.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1669.gap.json b/pfam_gap_rates/DUF1669.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9b8667550dae6b56dd9d228b4164aa5078e1cbd
--- /dev/null
+++ b/pfam_gap_rates/DUF1669.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1674.gap.json b/pfam_gap_rates/DUF1674.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e2f07670f52c90bf9eb66d7ef30543e95b9fc75
--- /dev/null
+++ b/pfam_gap_rates/DUF1674.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1674", "n_seqs": 438, "length": 62, "gap_rates": [0.8447488584474886, 0.7374429223744292, 0.6621004566210046, 0.5547945205479452, 0.4885844748858447, 0.4520547945205479, 0.4269406392694064, 0.4041095890410959, 0.3698630136986301, 0.3378995433789954, 0.3287671232876712, 0.3013698630136986, 0.1963470319634703, 0.8835616438356164, 0.8904109589041096, 0.9178082191780822, 0.9429223744292238, 0.9474885844748858, 0.9315068493150684, 0.8972602739726028, 0.8904109589041096, 0.8744292237442922, 0.2009132420091324, 0.18036529680365296, 0.17123287671232876, 0.16210045662100456, 0.1415525114155251, 0.2648401826484018, 0.2146118721461187, 0.18036529680365296, 0.1415525114155251, 0.13470319634703196, 0.1004566210045662, 0.091324200913242, 0.01598173515981735, 0.0136986301369863, 0.0136986301369863, 0.0091324200913242, 0.00684931506849315, 0.3059360730593607, 0.00684931506849315, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.821917808219178, 0.8378995433789954, 0.7808219178082192, 0.0, 0.0045662100456621, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.01141552511415525, 0.01141552511415525, 0.01598173515981735, 0.01598173515981735, 0.01598173515981735, 0.0182648401826484, 0.02054794520547945, 0.0228310502283105], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1685.gap.json b/pfam_gap_rates/DUF1685.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fbb438dde0dbb7198462b3dd93ac6cbc99b1482
--- /dev/null
+++ b/pfam_gap_rates/DUF1685.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1685", "n_seqs": 198, "length": 64, "gap_rates": [0.2727272727272727, 0.25252525252525254, 0.16161616161616163, 0.15656565656565657, 0.12121212121212122, 0.045454545454545456, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.005050505050505051, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.8787878787878788, 0.4393939393939394, 0.9191919191919192, 0.9343434343434344, 0.8939393939393939, 0.015151515151515152, 0.005050505050505051, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.12626262626262627, 0.18686868686868688, 0.18686868686868688, 0.18686868686868688, 0.1919191919191919, 0.1919191919191919, 0.19696969696969696, 0.19696969696969696, 0.20707070707070707, 0.7474747474747475, 0.21717171717171718, 0.2222222222222222, 0.23232323232323232, 0.4595959595959596, 0.3484848484848485, 0.36363636363636365, 0.3939393939393939, 0.42424242424242425, 0.46464646464646464, 0.51010101010101, 0.5454545454545454, 0.6060606060606061, 0.702020202020202, 0.803030303030303, 0.9242424242424242], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1705.gap.json b/pfam_gap_rates/DUF1705.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e9c5dfe87c398fe74586dffe10ccd3657756693
--- /dev/null
+++ b/pfam_gap_rates/DUF1705.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1712.gap.json b/pfam_gap_rates/DUF1712.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad689d161958b6616c90aac7ccb3b0e5ea177056
--- /dev/null
+++ b/pfam_gap_rates/DUF1712.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1771.gap.json b/pfam_gap_rates/DUF1771.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7807f694863f255422c00f7881de2e56c2d208f1
--- /dev/null
+++ b/pfam_gap_rates/DUF1771.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1771", "n_seqs": 524, "length": 69, "gap_rates": [0.23473282442748092, 0.18702290076335878, 0.10114503816793893, 0.0648854961832061, 0.061068702290076333, 0.05534351145038168, 0.04770992366412214, 0.04198473282442748, 0.04007633587786259, 0.03816793893129771, 0.03625954198473282, 0.03435114503816794, 0.03435114503816794, 0.03625954198473282, 0.030534351145038167, 0.026717557251908396, 0.026717557251908396, 0.026717557251908396, 0.022900763358778626, 0.02099236641221374, 0.015267175572519083, 0.007633587786259542, 0.0057251908396946565, 0.0057251908396946565, 0.0057251908396946565, 0.0057251908396946565, 0.007633587786259542, 0.007633587786259542, 0.0057251908396946565, 0.003816793893129771, 0.9389312977099237, 0.9446564885496184, 0.9446564885496184, 0.9408396946564885, 0.9389312977099237, 0.0019083969465648854, 0.0019083969465648854, 0.0019083969465648854, 0.0019083969465648854, 0.0019083969465648854, 0.0019083969465648854, 0.0019083969465648854, 0.0019083969465648854, 0.0019083969465648854, 0.003816793893129771, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.0057251908396946565, 0.009541984732824428, 0.009541984732824428, 0.009541984732824428, 0.009541984732824428, 0.013358778625954198, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.02099236641221374, 0.02099236641221374, 0.02099236641221374, 0.02099236641221374, 0.026717557251908396, 0.030534351145038167, 0.04770992366412214, 0.07061068702290077, 0.12595419847328243, 0.2881679389312977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1772.gap.json b/pfam_gap_rates/DUF1772.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8d0a3b5c09323d318ecef52d225b8e98d3721b3
--- /dev/null
+++ b/pfam_gap_rates/DUF1772.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1772", "n_seqs": 562, "length": 194, "gap_rates": [0.22953736654804271, 0.22597864768683273, 0.2099644128113879, 0.19750889679715303, 0.1903914590747331, 0.1797153024911032, 0.16725978647686832, 0.1512455516014235, 0.13701067615658363, 0.12633451957295375, 0.11387900355871886, 0.11209964412811388, 0.10676156583629894, 0.10676156583629894, 0.10142348754448399, 0.099644128113879, 0.09252669039145907, 0.09074733096085409, 0.10676156583629894, 0.11209964412811388, 0.12277580071174377, 0.45373665480427045, 0.4483985765124555, 0.6814946619217082, 0.7135231316725978, 0.7651245551601423, 0.7864768683274022, 0.8416370106761566, 0.7935943060498221, 0.7829181494661922, 0.7526690391459074, 0.708185053380783, 0.6405693950177936, 0.14590747330960854, 0.1601423487544484, 0.13345195729537365, 0.12099644128113879, 0.11209964412811388, 0.1298932384341637, 0.13523131672597866, 0.12811387900355872, 0.09608540925266904, 0.27402135231316727, 0.24733096085409254, 0.2402135231316726, 0.7935943060498221, 0.23309608540925267, 0.19750889679715303, 0.1797153024911032, 0.033807829181494664, 0.021352313167259787, 0.02491103202846975, 0.8985765124555161, 0.9395017793594306, 0.8701067615658363, 0.02491103202846975, 0.021352313167259787, 0.019572953736654804, 0.019572953736654804, 0.019572953736654804, 0.019572953736654804, 0.023131672597864767, 0.021352313167259787, 0.026690391459074734, 0.03202846975088968, 0.7722419928825622, 0.15302491103202848, 0.09786476868327403, 0.08540925266903915, 0.6832740213523132, 0.8096085409252669, 0.8825622775800712, 0.9110320284697508, 0.9483985765124555, 0.9288256227758007, 0.895017793594306, 0.8540925266903915, 0.7526690391459074, 0.6138790035587188, 0.2615658362989324, 0.24555160142348753, 0.099644128113879, 0.051601423487544484, 0.03914590747330961, 0.028469750889679714, 0.030249110320284697, 0.03202846975088968, 0.01601423487544484, 0.014234875444839857, 0.012455516014234875, 0.017793594306049824, 0.5355871886120996, 0.04448398576512456, 0.08718861209964412, 0.010676156583629894, 0.008896797153024912, 0.008896797153024912, 0.9270462633451957, 0.01601423487544484, 0.01601423487544484, 0.08185053380782918, 0.0711743772241993, 0.017793594306049824, 0.010676156583629894, 0.008896797153024912, 0.008896797153024912, 0.0071174377224199285, 0.005338078291814947, 0.005338078291814947, 0.0071174377224199285, 0.008896797153024912, 0.0071174377224199285, 0.008896797153024912, 0.9395017793594306, 0.019572953736654804, 0.012455516014234875, 0.030249110320284697, 0.033807829181494664, 0.04804270462633452, 0.042704626334519574, 0.05338078291814947, 0.028469750889679714, 0.7562277580071174, 0.7811387900355872, 0.8096085409252669, 0.8291814946619217, 0.8523131672597865, 0.8736654804270463, 0.8879003558718861, 0.9039145907473309, 0.9199288256227758, 0.9234875444839857, 0.9306049822064056, 0.9359430604982206, 0.9412811387900356, 0.9483985765124555, 0.9377224199288257, 0.9341637010676157, 0.9270462633451957, 0.9234875444839857, 0.9110320284697508, 0.8932384341637011, 0.8825622775800712, 0.8647686832740213, 0.8309608540925267, 0.8202846975088968, 0.797153024911032, 0.7686832740213523, 0.7455516014234875, 0.08718861209964412, 0.6690391459074733, 0.26512455516014233, 0.26868327402135234, 0.32562277580071175, 0.39501779359430605, 0.4288256227758007, 0.37544483985765126, 0.31316725978647686, 0.23309608540925267, 0.04804270462633452, 0.02491103202846975, 0.010676156583629894, 0.008896797153024912, 0.0071174377224199285, 0.0071174377224199285, 0.05693950177935943, 0.014234875444839857, 0.014234875444839857, 0.0071174377224199285, 0.9377224199288257, 0.7722419928825622, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.008896797153024912, 0.0071174377224199285, 0.008896797153024912, 0.008896797153024912, 0.012455516014234875, 0.014234875444839857, 0.014234875444839857, 0.014234875444839857, 0.014234875444839857, 0.017793594306049824, 0.017793594306049824, 0.019572953736654804, 0.02491103202846975, 0.02491103202846975, 0.030249110320284697, 0.033807829181494664, 0.042704626334519574, 0.09252669039145907, 0.29359430604982206, 0.5907473309608541], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1810.gap.json b/pfam_gap_rates/DUF1810.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb5f2322ae464744c6a48463935835df52f5be12
--- /dev/null
+++ b/pfam_gap_rates/DUF1810.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1810", "n_seqs": 191, "length": 140, "gap_rates": [0.35602094240837695, 0.17801047120418848, 0.1256544502617801, 0.09947643979057591, 0.07853403141361257, 0.07329842931937172, 0.07329842931937172, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.8795811518324608, 0.8586387434554974, 0.06282722513089005, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.04712041884816754, 0.04712041884816754, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.03664921465968586, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.031413612565445025, 0.02617801047120419, 0.02617801047120419, 0.03664921465968586, 0.06282722513089005, 0.9162303664921466, 0.05235602094240838, 0.03664921465968586, 0.03664921465968586, 0.041884816753926704, 0.03664921465968586, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.041884816753926704, 0.9424083769633508, 0.041884816753926704, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.041884816753926704, 0.04712041884816754, 0.2356020942408377, 0.8795811518324608, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.08376963350785341, 0.08900523560209424, 0.08376963350785341, 0.12041884816753927, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.08900523560209424, 0.09947643979057591, 0.14136125654450263, 0.2879581151832461], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1836.gap.json b/pfam_gap_rates/DUF1836.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea9edc2ca3c78b85c2bcf9afd2e14d528a57522e
--- /dev/null
+++ b/pfam_gap_rates/DUF1836.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1836", "n_seqs": 404, "length": 116, "gap_rates": [0.7351485148514851, 0.39603960396039606, 0.16336633663366337, 0.10396039603960396, 0.09900990099009901, 0.09900990099009901, 0.09653465346534654, 0.08415841584158416, 0.07425742574257425, 0.06930693069306931, 0.06930693069306931, 0.06683168316831684, 0.06188118811881188, 0.06188118811881188, 0.06188118811881188, 0.06188118811881188, 0.06188118811881188, 0.06188118811881188, 0.06188118811881188, 0.06188118811881188, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.05693069306930693, 0.12623762376237624, 0.17574257425742573, 0.1782178217821782, 0.17326732673267325, 0.4183168316831683, 0.3886138613861386, 0.33910891089108913, 0.943069306930693, 0.4603960396039604, 0.022277227722772276, 0.017326732673267328, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.007425742574257425, 0.9381188118811881, 0.9381188118811881, 0.9381188118811881, 0.007425742574257425, 0.007425742574257425, 0.007425742574257425, 0.007425742574257425, 0.007425742574257425, 0.007425742574257425, 0.007425742574257425, 0.007425742574257425, 0.8762376237623762, 0.007425742574257425, 0.012376237623762377, 0.943069306930693, 0.9405940594059405, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.012376237623762377, 0.01485148514851485, 0.022277227722772276, 0.027227722772277228, 0.034653465346534656, 0.04950495049504951, 0.05693069306930693, 0.05693069306930693, 0.45544554455445546, 0.4504950495049505, 0.4504950495049505, 0.43316831683168316, 0.4034653465346535, 0.5915841584158416, 0.7722772277227723, 0.5420792079207921, 0.12128712871287128, 0.13613861386138615, 0.14356435643564355, 0.14356435643564355, 0.14603960396039603, 0.1485148514851485, 0.15346534653465346, 0.1806930693069307, 0.2995049504950495, 0.5099009900990099], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1837.gap.json b/pfam_gap_rates/DUF1837.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7bc45d1f8ea4b1f3f4bb18626e4aa5d52a8c78b
--- /dev/null
+++ b/pfam_gap_rates/DUF1837.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1837", "n_seqs": 105, "length": 302, "gap_rates": [0.819047619047619, 0.5333333333333333, 0.3619047619047619, 0.3619047619047619, 0.34285714285714286, 0.3142857142857143, 0.3047619047619048, 0.3047619047619048, 0.2761904761904762, 0.26666666666666666, 0.2571428571428571, 0.2571428571428571, 0.24761904761904763, 0.23809523809523808, 0.21904761904761905, 0.21904761904761905, 0.21904761904761905, 0.21904761904761905, 0.26666666666666666, 0.26666666666666666, 0.9238095238095239, 0.23809523809523808, 0.21904761904761905, 0.20952380952380953, 0.20952380952380953, 0.2, 0.2, 0.2, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.18095238095238095, 0.18095238095238095, 0.20952380952380953, 0.22857142857142856, 0.8571428571428571, 0.8952380952380953, 0.9047619047619048, 0.9142857142857143, 0.9047619047619048, 0.8761904761904762, 0.780952380952381, 0.4666666666666667, 0.23809523809523808, 0.09523809523809523, 0.06666666666666667, 0.05714285714285714, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1847.gap.json b/pfam_gap_rates/DUF1847.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b25dfe21611f4844476bc068a08bb95ac30b8e65
--- /dev/null
+++ b/pfam_gap_rates/DUF1847.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1847", "n_seqs": 146, "length": 170, "gap_rates": [0.5273972602739726, 0.5068493150684932, 0.4863013698630137, 0.4657534246575342, 0.5, 0.3904109589041096, 0.3287671232876712, 0.3082191780821918, 0.821917808219178, 0.2876712328767123, 0.2328767123287671, 0.19863013698630136, 0.15753424657534246, 0.14383561643835616, 0.1232876712328767, 0.10273972602739725, 0.08904109589041095, 0.08904109589041095, 0.19863013698630136, 0.7465753424657534, 0.0821917808219178, 0.07534246575342465, 0.0684931506849315, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.0684931506849315, 0.08904109589041095, 0.0684931506849315, 0.0547945205479452, 0.04794520547945205, 0.8356164383561644, 0.8356164383561644, 0.8356164383561644, 0.8356164383561644, 0.863013698630137, 0.8835616438356164, 0.8561643835616438, 0.8356164383561644, 0.8356164383561644, 0.8356164383561644, 0.821917808219178, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.06164383561643835, 0.07534246575342465, 0.0821917808219178, 0.08904109589041095, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.04794520547945205, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0547945205479452, 0.08904109589041095, 0.3767123287671233, 0.5136986301369864, 0.4726027397260274, 0.1095890410958904, 0.08904109589041095, 0.0684931506849315, 0.04794520547945205, 0.0273972602739726, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.0410958904109589, 0.04794520547945205, 0.14383561643835616], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1848.gap.json b/pfam_gap_rates/DUF1848.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6c64ea02735bcce870448f5dcf98e2e1b4a5992
--- /dev/null
+++ b/pfam_gap_rates/DUF1848.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1906.gap.json b/pfam_gap_rates/DUF1906.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fddac648d4550ce4be69276b75fd32c6673fd07e
--- /dev/null
+++ b/pfam_gap_rates/DUF1906.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1906", "n_seqs": 217, "length": 160, "gap_rates": [0.6175115207373272, 0.41013824884792627, 0.2672811059907834, 0.2073732718894009, 0.1889400921658986, 0.1889400921658986, 0.1889400921658986, 0.1889400921658986, 0.8525345622119815, 0.1889400921658986, 0.1889400921658986, 0.1889400921658986, 0.16129032258064516, 0.10599078341013825, 0.08755760368663594, 0.07834101382488479, 0.07834101382488479, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.7235023041474654, 0.9400921658986175, 0.9078341013824884, 0.6682027649769585, 0.17972350230414746, 0.2534562211981567, 0.24423963133640553, 0.3686635944700461, 0.31336405529953915, 0.22119815668202766, 0.20276497695852536, 0.06451612903225806, 0.059907834101382486, 0.055299539170506916, 0.05069124423963134, 0.041474654377880185, 0.03686635944700461, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.02304147465437788, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.02304147465437788, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.02304147465437788, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.018433179723502304, 0.018433179723502304, 0.027649769585253458, 0.027649769585253458, 0.7142857142857143, 0.7972350230414746, 0.8110599078341014, 0.8248847926267281, 0.8709677419354839, 0.9124423963133641, 0.9493087557603687, 0.9493087557603687, 0.9493087557603687, 0.9354838709677419, 0.8940092165898618, 0.8571428571428571, 0.8202764976958525, 0.8018433179723502, 0.7465437788018433, 0.695852534562212, 0.03225806451612903, 0.14746543778801843, 0.14285714285714285, 0.1336405529953917, 0.29493087557603687, 0.2672811059907834, 0.24423963133640553, 0.15207373271889402, 0.8433179723502304, 0.880184331797235, 0.9124423963133641, 0.9493087557603687, 0.8894009216589862, 0.8525345622119815, 0.6082949308755761, 0.391705069124424, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.03225806451612903, 0.059907834101382486, 0.018433179723502304, 0.018433179723502304, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.009216589861751152, 0.009216589861751152, 0.7649769585253456, 0.04608294930875576, 0.041474654377880185, 0.11059907834101383, 0.08755760368663594, 0.055299539170506916, 0.04608294930875576, 0.06451612903225806, 0.12903225806451613, 0.1382488479262673, 0.11059907834101383, 0.11059907834101383, 0.11059907834101383, 0.08294930875576037, 0.02304147465437788, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.9032258064516129, 0.8847926267281107, 0.09216589861751152, 0.055299539170506916, 0.02304147465437788, 0.2304147465437788, 0.8847926267281107, 0.8617511520737328, 0.19815668202764977, 0.02304147465437788, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.03686635944700461, 0.271889400921659], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1977.gap.json b/pfam_gap_rates/DUF1977.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b2b22ebe1881acc745bdda8f894044d4fe2e50c
--- /dev/null
+++ b/pfam_gap_rates/DUF1977.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1977", "n_seqs": 364, "length": 134, "gap_rates": [0.9258241758241759, 0.5769230769230769, 0.1565934065934066, 0.06593406593406594, 0.06318681318681318, 0.03571428571428571, 0.019230769230769232, 0.013736263736263736, 0.013736263736263736, 0.804945054945055, 0.6593406593406593, 0.013736263736263736, 0.013736263736263736, 0.013736263736263736, 0.016483516483516484, 0.013736263736263736, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.008241758241758242, 0.008241758241758242, 0.9368131868131868, 0.08516483516483517, 0.005494505494505495, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.005494505494505495, 0.0027472527472527475, 0.9065934065934066, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.9120879120879121, 0.19505494505494506, 0.7664835164835165, 0.7197802197802198, 0.016483516483516484, 0.8956043956043956, 0.8983516483516484, 0.8983516483516484, 0.9093406593406593, 0.9120879120879121, 0.9120879120879121, 0.9258241758241759, 0.9285714285714286, 0.9368131868131868, 0.9478021978021978, 0.9423076923076923, 0.9285714285714286, 0.9258241758241759, 0.9258241758241759, 0.9120879120879121, 0.9120879120879121, 0.9010989010989011, 0.8983516483516484, 0.8983516483516484, 0.8956043956043956, 0.02197802197802198, 0.008241758241758242, 0.945054945054945, 0.9340659340659341, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.008241758241758242, 0.013736263736263736, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.02197802197802198, 0.02197802197802198, 0.024725274725274724, 0.019230769230769232, 0.02197802197802198, 0.019230769230769232, 0.02197802197802198, 0.024725274725274724, 0.024725274725274724, 0.024725274725274724, 0.03571428571428571, 0.046703296703296704, 0.07967032967032966, 0.18681318681318682, 0.18956043956043955, 0.19230769230769232, 0.1978021978021978, 0.2032967032967033, 0.2087912087912088, 0.21703296703296704, 0.5796703296703297, 0.5906593406593407, 0.23901098901098902, 0.8846153846153846, 0.8791208791208791, 0.23626373626373626, 0.23626373626373626, 0.23076923076923078, 0.23351648351648352, 0.23351648351648352, 0.23351648351648352, 0.22527472527472528, 0.22802197802197802, 0.22802197802197802, 0.22802197802197802, 0.23076923076923078, 0.23351648351648352, 0.23626373626373626, 0.23626373626373626, 0.23351648351648352, 0.23351648351648352, 0.23626373626373626, 0.23626373626373626, 0.24175824175824176, 0.24725274725274726, 0.25824175824175827, 0.2967032967032967, 0.6978021978021978], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1987.gap.json b/pfam_gap_rates/DUF1987.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8bdcbd402bb9217ad648d1dd1f4e40b91c0ec33
--- /dev/null
+++ b/pfam_gap_rates/DUF1987.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1987", "n_seqs": 179, "length": 102, "gap_rates": [0.08379888268156424, 0.0782122905027933, 0.061452513966480445, 0.055865921787709494, 0.05027932960893855, 0.03910614525139665, 0.03910614525139665, 0.055865921787709494, 0.0111731843575419, 0.0111731843575419, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.0111731843575419, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0111731843575419, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9217877094972067, 0.664804469273743, 0.0, 0.01675977653631285, 0.03910614525139665, 0.0111731843575419, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.0, 0.027932960893854747, 0.11173184357541899, 0.88268156424581, 0.10614525139664804, 0.08379888268156424, 0.0670391061452514, 0.027932960893854747, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.0223463687150838, 0.027932960893854747, 0.03910614525139665, 0.03910614525139665, 0.027932960893854747, 0.0446927374301676, 0.055865921787709494, 0.055865921787709494, 0.061452513966480445, 0.08379888268156424, 0.11731843575418995, 0.19553072625698323], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1998.gap.json b/pfam_gap_rates/DUF1998.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c37b5894720c09e9f31da73ab64e0a6e4d713cba
--- /dev/null
+++ b/pfam_gap_rates/DUF1998.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1998", "n_seqs": 915, "length": 123, "gap_rates": [0.3639344262295082, 0.16174863387978142, 0.08524590163934426, 0.0633879781420765, 0.05245901639344262, 0.05027322404371585, 0.048087431693989074, 0.046994535519125684, 0.04480874316939891, 0.04480874316939891, 0.04480874316939891, 0.046994535519125684, 0.04590163934426229, 0.04371584699453552, 0.041530054644808745, 0.03934426229508197, 0.024043715846994537, 0.020765027322404372, 0.01639344262295082, 0.01639344262295082, 0.015300546448087432, 0.014207650273224045, 0.013114754098360656, 0.013114754098360656, 0.014207650273224045, 0.12459016393442623, 0.12021857923497267, 0.31256830601092894, 0.3103825136612022, 0.5540983606557377, 0.34972677595628415, 0.780327868852459, 0.8262295081967214, 0.8426229508196721, 0.9486338797814208, 0.8404371584699454, 0.8109289617486338, 0.7486338797814208, 0.2185792349726776, 0.08743169398907104, 0.004371584699453552, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.002185792349726776, 0.001092896174863388, 0.001092896174863388, 0.001092896174863388, 0.0, 0.0, 0.0, 0.007650273224043716, 0.9060109289617486, 0.9049180327868852, 0.00546448087431694, 0.001092896174863388, 0.002185792349726776, 0.003278688524590164, 0.002185792349726776, 0.13989071038251366, 0.1377049180327869, 0.1377049180327869, 0.004371584699453552, 0.00546448087431694, 0.008743169398907104, 0.05027322404371585, 0.05792349726775956, 0.03934426229508197, 0.002185792349726776, 0.7781420765027323, 0.7978142076502732, 0.8426229508196721, 0.9486338797814208, 0.940983606557377, 0.8, 0.7846994535519126, 0.7770491803278688, 0.004371584699453552, 0.004371584699453552, 0.004371584699453552, 0.004371584699453552, 0.00546448087431694, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.030601092896174863, 0.06120218579234973, 0.04918032786885246, 0.015300546448087432, 0.898360655737705, 0.013114754098360656, 0.8207650273224044, 0.8677595628415301, 0.9344262295081968, 0.9442622950819672, 0.9475409836065574, 0.9497267759562842, 0.9453551912568307, 0.9355191256830601, 0.9322404371584699, 0.8306010928961749, 0.819672131147541, 0.012021857923497269, 0.04371584699453552, 0.7234972677595628, 0.8065573770491803, 0.8524590163934426, 0.8797814207650273, 0.8819672131147541, 0.8830601092896175, 0.898360655737705, 0.8830601092896175, 0.8819672131147541, 0.8775956284153006, 0.825136612021858, 0.7355191256830601, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.014207650273224045, 0.014207650273224045, 0.10382513661202186], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2001.gap.json b/pfam_gap_rates/DUF2001.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56d408ad5cbe5b00702430a7d757a0f9560ce108
--- /dev/null
+++ b/pfam_gap_rates/DUF2001.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2001", "n_seqs": 136, "length": 147, "gap_rates": [0.5588235294117647, 0.21323529411764705, 0.1323529411764706, 0.09558823529411764, 0.0661764705882353, 0.051470588235294115, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.5294117647058824, 0.5514705882352942, 0.5514705882352942, 0.5073529411764706, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.07352941176470588, 0.0661764705882353, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.022058823529411766, 0.022058823529411766, 0.04411764705882353, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.15441176470588236, 0.125, 0.125, 0.125, 0.11029411764705882, 0.11029411764705882, 0.11029411764705882, 0.10294117647058823, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.014705882352941176, 0.007352941176470588, 0.007352941176470588, 0.014705882352941176, 0.47794117647058826, 0.03676470588235294, 0.007352941176470588, 0.9411764705882353, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.8823529411764706, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.014705882352941176, 0.022058823529411766, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.8529411764705882, 0.5073529411764706, 0.022058823529411766, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.022058823529411766, 0.03676470588235294, 0.058823529411764705, 0.08088235294117647, 0.11029411764705882, 0.1323529411764706, 0.1323529411764706, 0.16176470588235295, 0.2426470588235294, 0.375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2029.gap.json b/pfam_gap_rates/DUF2029.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64c62e19ad443faf628ae3262e2e7d4d28c73715
--- /dev/null
+++ b/pfam_gap_rates/DUF2029.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2045.gap.json b/pfam_gap_rates/DUF2045.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe55e1bba7ff853ed534ba2fecca76e2ca1f8769
--- /dev/null
+++ b/pfam_gap_rates/DUF2045.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF2054.gap.json b/pfam_gap_rates/DUF2054.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1627d409a7a121b9f3e1bac8dde172a0bebf1e0
--- /dev/null
+++ b/pfam_gap_rates/DUF2054.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2058.gap.json b/pfam_gap_rates/DUF2058.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..900530b44c2da0549bf56709e1ebe561fdfca981
--- /dev/null
+++ b/pfam_gap_rates/DUF2058.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2079.gap.json b/pfam_gap_rates/DUF2079.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51f0bd92a5ed223f4299b2b4a29cfa7b2bf2519e
--- /dev/null
+++ b/pfam_gap_rates/DUF2079.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2087.gap.json b/pfam_gap_rates/DUF2087.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f9ade28cb2a799bca304a088c3fc3597b1c57c5
--- /dev/null
+++ b/pfam_gap_rates/DUF2087.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2087", "n_seqs": 330, "length": 72, "gap_rates": [0.4212121212121212, 0.08484848484848485, 0.06666666666666667, 0.03939393939393939, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.024242424242424242, 0.024242424242424242, 0.021212121212121213, 0.012121212121212121, 0.015151515151515152, 0.012121212121212121, 0.012121212121212121, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.9090909090909091, 0.012121212121212121, 0.012121212121212121, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.006060606060606061, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0, 0.0, 0.0, 0.0030303030303030303, 0.7636363636363637, 0.7333333333333333, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.01818181818181818, 0.01818181818181818, 0.3181818181818182, 0.3090909090909091, 0.00909090909090909, 0.00909090909090909, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.0696969696969697, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2094.gap.json b/pfam_gap_rates/DUF2094.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1791509999876812c9f8dec650123082ee72c480
--- /dev/null
+++ b/pfam_gap_rates/DUF2094.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2094", "n_seqs": 125, "length": 139, "gap_rates": [0.224, 0.072, 0.032, 0.024, 0.024, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.016, 0.024, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.016, 0.016, 0.016, 0.008, 0.008, 0.016, 0.016, 0.032, 0.04, 0.04, 0.04, 0.336, 0.336, 0.944, 0.104, 0.088, 0.08, 0.08, 0.064, 0.056, 0.04, 0.04, 0.04, 0.064, 0.04, 0.016, 0.016, 0.024, 0.024, 0.024, 0.248, 0.048, 0.056, 0.032, 0.056, 0.08, 0.112, 0.064, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.008, 0.008, 0.008, 0.008, 0.016, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.016, 0.136, 0.136, 0.128, 0.088, 0.112, 0.104, 0.096, 0.728, 0.736, 0.72, 0.112, 0.096, 0.08, 0.088, 0.088, 0.088, 0.088, 0.088, 0.088, 0.088, 0.096, 0.088, 0.088, 0.088, 0.096, 0.096, 0.096, 0.104, 0.112, 0.128, 0.2, 0.208, 0.176, 0.192, 0.2, 0.208, 0.216, 0.224, 0.224, 0.224, 0.232, 0.256, 0.352, 0.368, 0.464, 0.648, 0.856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF21.gap.json b/pfam_gap_rates/DUF21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..207b1fa543ad14fca7515c814ae44a9850d3599b
--- /dev/null
+++ b/pfam_gap_rates/DUF21.gap.json
@@ -0,0 +1 @@
+{"family": "DUF21", "n_seqs": 4607, "length": 206, "gap_rates": [0.7521163446928587, 0.33579335793357934, 0.16084219665726068, 0.10766225309311916, 0.08009550683742131, 0.06967657911873236, 0.065769481224224, 0.06273062730627306, 0.05904059040590406, 0.05904059040590406, 0.058389407423486, 0.05708704145864988, 0.05383112654655958, 0.053179943564141526, 0.04666811373996093, 0.04536574777512481, 0.04514868678098546, 0.04471456479270675, 0.04428044280442804, 0.04037334490991969, 0.03624918602127198, 0.035380942044714564, 0.03472975906229651, 0.03494682005643586, 0.034295637074017796, 0.03407857607987844, 0.03364445409159974, 0.034295637074017796, 0.9381376166702844, 0.9411764705882353, 0.9392229216409811, 0.9329281528109399, 0.03299327110918168, 0.03690036900369004, 0.035380942044714564, 0.035380942044714564, 0.03364445409159974, 0.03342739309746039, 0.04319513783373128, 0.08508790970262643, 0.8879965270240938, 0.9042761015845453, 0.893640112871717, 0.8762752333405687, 0.04514868678098546, 0.029303234208812676, 0.02626438029086173, 0.02474495333188626, 0.02387670935532885, 0.023008465378771433, 0.02192316040807467, 0.020403733449099196, 0.01996961146082049, 0.01931842847840243, 0.018884306490123726, 0.01845018450184502, 0.01845018450184502, 0.018233123507705666, 0.018233123507705666, 0.017799001519426958, 0.01845018450184502, 0.017799001519426958, 0.018016062513566314, 0.017364879531148254, 0.017147818537008898, 0.016713696548730193, 0.01649663555459084, 0.016062513566312133, 0.01649663555459084, 0.01649663555459084, 0.01649663555459084, 0.01584545257217278, 0.01584545257217278, 0.01584545257217278, 0.01584545257217278, 0.01584545257217278, 0.015411330583894075, 0.015411330583894075, 0.015411330583894075, 0.016062513566312133, 0.016062513566312133, 0.016062513566312133, 0.01975255046668114, 0.01866724549598437, 0.01975255046668114, 0.02322552637291079, 0.024527892337746906, 0.1858042109832863, 0.39049272845669636, 0.4846971999131756, 0.5166051660516605, 0.5400477534187107, 0.5504666811373996, 0.5789016713696549, 0.631864553939657, 0.9331452138050792, 0.893640112871717, 0.6014760147601476, 0.5693509876275233, 0.5456913392663338, 0.5333188626003907, 0.4951161276318646, 0.47384415020620796, 0.237247666594313, 0.19861080963750813, 0.18450184501845018, 0.17668764922943347, 0.17299761232906447, 0.1686563924462774, 0.1551986108096375, 0.1256783156066855, 0.1269806815715216, 0.014108964619057956, 0.013240720642500543, 0.01237247666594313, 0.8437160842196657, 0.01107011070110701, 0.010418927718688952, 0.010418927718688952, 0.010418927718688952, 0.010635988712828304, 0.00955068374213154, 0.009767744736270892, 0.009984805730410246, 0.011504232689385717, 0.009333622747992185, 0.009984805730410246, 0.009767744736270892, 0.009767744736270892, 0.010418927718688952, 0.010201866724549598, 0.009984805730410246, 0.010853049706967658, 0.010853049706967658, 0.011504232689385717, 0.011504232689385717, 0.011504232689385717, 0.011504232689385717, 0.011504232689385717, 0.01172129368352507, 0.011938354677664425, 0.01237247666594313, 0.011938354677664425, 0.011938354677664425, 0.01237247666594313, 0.012589537660082483, 0.012806598654221837, 0.012589537660082483, 0.012806598654221837, 0.012806598654221837, 0.013240720642500543, 0.01302365964836119, 0.013240720642500543, 0.013240720642500543, 0.013891903624918602, 0.014326025613197308, 0.014326025613197308, 0.014977208595615368, 0.014977208595615368, 0.015411330583894075, 0.01845018450184502, 0.018016062513566314, 0.018233123507705666, 0.01845018450184502, 0.017581940525287606, 0.018884306490123726, 0.01931842847840243, 0.01931842847840243, 0.01996961146082049, 0.2474495333188626, 0.3381810288691122, 0.5022791404384632, 0.679183850662036, 0.3720425439548513, 0.2791404384632082, 0.22682873887562405, 0.05426524853483829, 0.028000868243976556, 0.027132624267419143, 0.027783807249837204, 0.02821792923811591, 0.026481441285001087, 0.02669850227914044, 0.02756674625569785, 0.02821792923811591, 0.028000868243976556, 0.027783807249837204, 0.02821792923811591, 0.02886911222053397, 0.029737356197091384, 0.03082266116778815, 0.03125678315606686, 0.03255914912090297, 0.03581506403299327, 0.04080746689819839, 0.0477534187106577, 0.08378554373779032, 0.1098328630345127, 0.1356631213370957, 0.19470371174299977, 0.2229216409811157, 0.2433253744302149, 0.27219448665074886, 0.31994790536140655, 0.4373779031907966, 0.5810722813110484], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2171.gap.json b/pfam_gap_rates/DUF2171.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b08c2979598036384847ad94650f0a955150b2a9
--- /dev/null
+++ b/pfam_gap_rates/DUF2171.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2171", "n_seqs": 101, "length": 78, "gap_rates": [0.16831683168316833, 0.12871287128712872, 0.07920792079207921, 0.04950495049504951, 0.0297029702970297, 0.009900990099009901, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9207920792079208, 0.9306930693069307, 0.9207920792079208, 0.9207920792079208, 0.0, 0.009900990099009901, 0.8415841584158416, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.19801980198019803, 0.22772277227722773, 0.42574257425742573, 0.7029702970297029, 0.8811881188118812, 0.900990099009901, 0.9207920792079208, 0.9207920792079208, 0.900990099009901, 0.8811881188118812, 0.7425742574257426, 0.6534653465346535, 0.1485148514851485, 0.039603960396039604, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.19801980198019803, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0297029702970297, 0.04950495049504951, 0.06930693069306931, 0.10891089108910891, 0.1485148514851485, 0.18811881188118812], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2183.gap.json b/pfam_gap_rates/DUF2183.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95f605dcc1899e51a0ae8ca8ac4a7f87f15937b1
--- /dev/null
+++ b/pfam_gap_rates/DUF2183.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2183", "n_seqs": 487, "length": 103, "gap_rates": [0.11088295687885011, 0.028747433264887063, 0.026694045174537988, 0.026694045174537988, 0.024640657084188913, 0.022587268993839837, 0.022587268993839837, 0.022587268993839837, 0.022587268993839837, 0.022587268993839837, 0.022587268993839837, 0.022587268993839837, 0.022587268993839837, 0.022587268993839837, 0.018480492813141684, 0.018480492813141684, 0.018480492813141684, 0.018480492813141684, 0.018480492813141684, 0.018480492813141684, 0.01642710472279261, 0.018480492813141684, 0.27104722792607805, 0.01642710472279261, 0.01642710472279261, 0.014373716632443531, 0.014373716632443531, 0.014373716632443531, 0.014373716632443531, 0.012320328542094456, 0.01026694045174538, 0.012320328542094456, 0.012320328542094456, 0.012320328542094456, 0.012320328542094456, 0.7207392197125256, 0.15811088295687886, 0.13347022587268995, 0.06776180698151951, 0.04722792607802875, 0.07597535934291581, 0.0944558521560575, 0.09856262833675565, 0.12525667351129363, 0.6098562628336756, 0.5995893223819302, 0.8008213552361396, 0.7351129363449692, 0.08213552361396304, 0.022587268993839837, 0.02053388090349076, 0.01026694045174538, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.006160164271047228, 0.006160164271047228, 0.004106776180698152, 0.006160164271047228, 0.006160164271047228, 0.006160164271047228, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.006160164271047228, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.004106776180698152, 0.008213552361396304, 0.01026694045174538, 0.9260780287474333, 0.01026694045174538, 0.012320328542094456, 0.018480492813141684, 0.01642710472279261, 0.01642710472279261, 0.01642710472279261, 0.01642710472279261, 0.018480492813141684, 0.018480492813141684, 0.02053388090349076, 0.02053388090349076, 0.02053388090349076, 0.030800821355236138, 0.024640657084188913, 0.026694045174537988, 0.028747433264887063, 0.028747433264887063, 0.028747433264887063, 0.030800821355236138, 0.030800821355236138, 0.03490759753593429, 0.162217659137577], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2188.gap.json b/pfam_gap_rates/DUF2188.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e22e147f0ddd0d7bf68da9dd42f038f604003ab
--- /dev/null
+++ b/pfam_gap_rates/DUF2188.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2188", "n_seqs": 287, "length": 68, "gap_rates": [0.445993031358885, 0.24041811846689895, 0.21254355400696864, 0.16376306620209058, 0.21951219512195122, 0.8397212543554007, 0.4564459930313589, 0.05226480836236934, 0.04529616724738676, 0.0313588850174216, 0.05574912891986063, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.08362369337979095, 0.027874564459930314, 0.006968641114982578, 0.14285714285714285, 0.1289198606271777, 0.010452961672473868, 0.003484320557491289, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.9477351916376306, 0.006968641114982578, 0.006968641114982578, 0.9024390243902439, 0.926829268292683, 0.9163763066202091, 0.8954703832752613, 0.10452961672473868, 0.6515679442508711, 0.04878048780487805, 0.04529616724738676, 0.05574912891986063, 0.06620209059233449, 0.07665505226480836, 0.08362369337979095, 0.08710801393728224, 0.0975609756097561, 0.10801393728222997, 0.11149825783972125, 0.13588850174216027, 0.14285714285714285, 0.1602787456445993, 0.18118466898954705, 0.21951219512195122, 0.2682926829268293, 0.34843205574912894, 0.397212543554007, 0.45993031358885017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2196.gap.json b/pfam_gap_rates/DUF2196.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e900ed44040bd0d24c92b0cec897f00ee2f550dc
--- /dev/null
+++ b/pfam_gap_rates/DUF2196.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2196", "n_seqs": 314, "length": 61, "gap_rates": [0.5, 0.2770700636942675, 0.09235668789808917, 0.054140127388535034, 0.028662420382165606, 0.022292993630573247, 0.009554140127388535, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0, 0.0, 0.0, 0.0, 0.0, 0.1624203821656051, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.009554140127388535, 0.012738853503184714, 0.012738853503184714, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01910828025477707, 0.025477707006369428, 0.025477707006369428, 0.028662420382165606, 0.07006369426751592, 0.21656050955414013], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2201.gap.json b/pfam_gap_rates/DUF2201.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ccb616f9826806cddd9552d7180bca200792341
--- /dev/null
+++ b/pfam_gap_rates/DUF2201.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2201", "n_seqs": 322, "length": 157, "gap_rates": [0.5031055900621118, 0.12111801242236025, 0.027950310559006212, 0.018633540372670808, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.018633540372670808, 0.018633540372670808, 0.021739130434782608, 0.018633540372670808, 0.015527950310559006, 0.012422360248447204, 0.015527950310559006, 0.015527950310559006, 0.012422360248447204, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.018633540372670808, 0.015527950310559006, 0.034161490683229816, 0.7484472049689441, 0.8726708074534162, 0.8819875776397516, 0.8136645962732919, 0.6304347826086957, 0.031055900621118012, 0.027950310559006212, 0.8881987577639752, 0.9130434782608695, 0.9130434782608695, 0.8881987577639752, 0.8881987577639752, 0.009316770186335404, 0.9347826086956522, 0.8726708074534162, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.009316770186335404, 0.012422360248447204, 0.006211180124223602, 0.006211180124223602, 0.009316770186335404, 0.6335403726708074, 0.6925465838509317, 0.6583850931677019, 0.5527950310559007, 0.1956521739130435, 0.15527950310559005, 0.2391304347826087, 0.07763975155279502, 0.052795031055900624, 0.046583850931677016, 0.062111801242236024, 0.024844720496894408, 0.012422360248447204, 0.015527950310559006, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.015527950310559006, 0.018633540372670808, 0.018633540372670808, 0.034161490683229816, 0.9006211180124224, 0.8944099378881988, 0.024844720496894408, 0.027950310559006212, 0.027950310559006212, 0.027950310559006212, 0.031055900621118012, 0.034161490683229816, 0.027950310559006212, 0.593167701863354, 0.7701863354037267, 0.7795031055900621, 0.7795031055900621, 0.7701863354037267, 0.7546583850931677, 0.468944099378882, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.7763975155279503, 0.040372670807453416, 0.049689440993788817, 0.052795031055900624, 0.18012422360248448, 0.9316770186335404, 0.059006211180124224, 0.055900621118012424, 0.059006211180124224, 0.07142857142857142, 0.17701863354037267, 0.09316770186335403, 0.7142857142857143, 0.062111801242236024, 0.059006211180124224, 0.059006211180124224, 0.062111801242236024, 0.062111801242236024, 0.06832298136645963, 0.07142857142857142, 0.07763975155279502, 0.08695652173913043, 0.09937888198757763, 0.8354037267080745, 0.6490683229813664, 0.2422360248447205, 0.2670807453416149, 0.19254658385093168, 0.2236024844720497, 0.2515527950310559, 0.2577639751552795, 0.7919254658385093, 0.8788819875776398, 0.7515527950310559, 0.2639751552795031, 0.717391304347826, 0.2701863354037267, 0.27639751552795033, 0.2888198757763975, 0.32298136645962733, 0.3385093167701863, 0.40993788819875776, 0.5031055900621118, 0.9099378881987578], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2225.gap.json b/pfam_gap_rates/DUF2225.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b20d8113654f68f23d586e49903cb08c5972075b
--- /dev/null
+++ b/pfam_gap_rates/DUF2225.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2225", "n_seqs": 227, "length": 278, "gap_rates": [0.36123348017621143, 0.24669603524229075, 0.18502202643171806, 0.18061674008810572, 0.13215859030837004, 0.1013215859030837, 0.07929515418502203, 0.07929515418502203, 0.07929515418502203, 0.07488986784140969, 0.07488986784140969, 0.07488986784140969, 0.07488986784140969, 0.07488986784140969, 0.07488986784140969, 0.07488986784140969, 0.07488986784140969, 0.07488986784140969, 0.08370044052863436, 0.07929515418502203, 0.07488986784140969, 0.07488986784140969, 0.0881057268722467, 0.09691629955947137, 0.07929515418502203, 0.09691629955947137, 0.07929515418502203, 0.08370044052863436, 0.8678414096916299, 0.8678414096916299, 0.8810572687224669, 0.8898678414096917, 0.8898678414096917, 0.8678414096916299, 0.8678414096916299, 0.8634361233480177, 0.07488986784140969, 0.06607929515418502, 0.07048458149779736, 0.06607929515418502, 0.06607929515418502, 0.06607929515418502, 0.06607929515418502, 0.06607929515418502, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2237.gap.json b/pfam_gap_rates/DUF2237.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..082042313442a3b51e11d79595acbe7a16d44493
--- /dev/null
+++ b/pfam_gap_rates/DUF2237.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2237", "n_seqs": 349, "length": 123, "gap_rates": [0.49570200573065903, 0.08022922636103152, 0.07163323782234957, 0.06876790830945559, 0.06876790830945559, 0.0659025787965616, 0.0659025787965616, 0.06303724928366762, 0.06017191977077364, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.06303724928366762, 0.07736389684813753, 0.0659025787965616, 0.045845272206303724, 0.045845272206303724, 0.045845272206303724, 0.04297994269340974, 0.04297994269340974, 0.04297994269340974, 0.04297994269340974, 0.04297994269340974, 0.04297994269340974, 0.04297994269340974, 0.04297994269340974, 0.04297994269340974, 0.045845272206303724, 0.04297994269340974, 0.04297994269340974, 0.03724928366762178, 0.034383954154727794, 0.03724928366762178, 0.034383954154727794, 0.034383954154727794, 0.03151862464183381, 0.03151862464183381, 0.03151862464183381, 0.03151862464183381, 0.025787965616045846, 0.025787965616045846, 0.022922636103151862, 0.022922636103151862, 0.02005730659025788, 0.02005730659025788, 0.02005730659025788, 0.02005730659025788, 0.025787965616045846, 0.025787965616045846, 0.02005730659025788, 0.017191977077363897, 0.02005730659025788, 0.02005730659025788, 0.014326647564469915, 0.014326647564469915, 0.017191977077363897, 0.017191977077363897, 0.03151862464183381, 0.12320916905444126, 0.12320916905444126, 0.12034383954154727, 0.13753581661891118, 0.12320916905444126, 0.12034383954154727, 0.10315186246418338, 0.03724928366762178, 0.025787965616045846, 0.025787965616045846, 0.022922636103151862, 0.022922636103151862, 0.025787965616045846, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.02005730659025788, 0.02005730659025788, 0.02005730659025788, 0.017191977077363897, 0.017191977077363897, 0.017191977077363897, 0.017191977077363897, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.8767908309455588, 0.8853868194842407, 0.8968481375358166, 0.9255014326647565, 0.9197707736389685, 0.8968481375358166, 0.8796561604584527, 0.8739255014326648, 0.03151862464183381, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.04011461318051576, 0.04297994269340974, 0.04297994269340974, 0.04297994269340974, 0.054441260744985676, 0.054441260744985676, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.06017191977077364, 0.06017191977077364, 0.07163323782234957, 0.0830945558739255, 0.28653295128939826], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2244.gap.json b/pfam_gap_rates/DUF2244.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d859c2a95c2d547d0e61d254c1291ab75c9e7ee
--- /dev/null
+++ b/pfam_gap_rates/DUF2244.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2244", "n_seqs": 219, "length": 142, "gap_rates": [0.2054794520547945, 0.0776255707762557, 0.0593607305936073, 0.0593607305936073, 0.0547945205479452, 0.0547945205479452, 0.0502283105022831, 0.045662100456621, 0.045662100456621, 0.045662100456621, 0.045662100456621, 0.0410958904109589, 0.045662100456621, 0.0319634703196347, 0.0273972602739726, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.7899543378995434, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045662100456621, 0.0045662100456621, 0.0, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045662100456621, 0.0091324200913242, 0.0319634703196347, 0.3881278538812785, 0.0273972602739726, 0.0228310502283105, 0.0, 0.0045662100456621, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0091324200913242, 0.0182648401826484, 0.0273972602739726, 0.045662100456621, 0.2557077625570776, 0.1963470319634703, 0.8584474885844748, 0.3926940639269406, 0.0182648401826484, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0776255707762557, 0.1735159817351598, 0.3059360730593607], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2285.gap.json b/pfam_gap_rates/DUF2285.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f13b7b0e6f431d34427a7a0164e131387ba1dec0
--- /dev/null
+++ b/pfam_gap_rates/DUF2285.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2285", "n_seqs": 179, "length": 112, "gap_rates": [0.8491620111731844, 0.6256983240223464, 0.6033519553072626, 0.5865921787709497, 0.5754189944134078, 0.5698324022346368, 0.5418994413407822, 0.5307262569832403, 0.5251396648044693, 0.48044692737430167, 0.48044692737430167, 0.4748603351955307, 0.4692737430167598, 0.46368715083798884, 0.45251396648044695, 0.4581005586592179, 0.45251396648044695, 0.45251396648044695, 0.4301675977653631, 0.4301675977653631, 0.4245810055865922, 0.4245810055865922, 0.41899441340782123, 0.9273743016759777, 0.441340782122905, 0.4301675977653631, 0.4134078212290503, 0.3463687150837989, 0.3016759776536313, 0.2737430167597765, 0.2346368715083799, 0.1787709497206704, 0.11731843575418995, 0.3128491620111732, 0.4134078212290503, 0.31843575418994413, 0.07262569832402235, 0.061452513966480445, 0.061452513966480445, 0.055865921787709494, 0.05027932960893855, 0.03910614525139665, 0.0335195530726257, 0.0223463687150838, 0.027932960893854747, 0.0223463687150838, 0.0223463687150838, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.00558659217877095, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9329608938547486, 0.888268156424581, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0223463687150838, 0.16201117318435754, 0.08379888268156424, 0.6033519553072626, 0.36312849162011174, 0.3407821229050279, 0.8994413407821229, 0.7877094972067039, 0.24581005586592178, 0.0223463687150838, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00558659217877095, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.027932960893854747, 0.07262569832402235, 0.39106145251396646], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2288.gap.json b/pfam_gap_rates/DUF2288.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1e3f20dff87af13ec904e97b984b052d82020b2
--- /dev/null
+++ b/pfam_gap_rates/DUF2288.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2288", "n_seqs": 113, "length": 92, "gap_rates": [0.7256637168141593, 0.23893805309734514, 0.09734513274336283, 0.04424778761061947, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.584070796460177, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017699115044247787, 0.2831858407079646], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF229.gap.json b/pfam_gap_rates/DUF229.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..755a2f50e1ce2bd3ca049cae37f989b2162faf64
--- /dev/null
+++ b/pfam_gap_rates/DUF229.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2298.gap.json b/pfam_gap_rates/DUF2298.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad8ccfee2806fd8a78d11946045d768bcf843fcb
--- /dev/null
+++ b/pfam_gap_rates/DUF2298.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2326.gap.json b/pfam_gap_rates/DUF2326.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fdb58688d9a948afed5b614bf59ddd69b17d17c6
--- /dev/null
+++ b/pfam_gap_rates/DUF2326.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2334.gap.json b/pfam_gap_rates/DUF2334.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6228d6f22ce5348adda1b3bc548a9eb1e48ae45
--- /dev/null
+++ b/pfam_gap_rates/DUF2334.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2341.gap.json b/pfam_gap_rates/DUF2341.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e81f40fd4c8ed2434e5aca1ec261b959d48b918
--- /dev/null
+++ b/pfam_gap_rates/DUF2341.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2341", "n_seqs": 160, "length": 95, "gap_rates": [0.35, 0.08125, 0.0625, 0.05625, 0.04375, 0.04375, 0.0375, 0.04375, 0.0375, 0.03125, 0.0375, 0.0375, 0.0375, 0.0375, 0.39375, 0.025, 0.01875, 0.01875, 0.01875, 0.0125, 0.0125, 0.0375, 0.275, 0.94375, 0.91875, 0.06875, 0.0125, 0.0125, 0.025, 0.1, 0.01875, 0.00625, 0.00625, 0.0, 0.0, 0.0, 0.0, 0.0375, 0.05, 0.0375, 0.05625, 0.04375, 0.83125, 0.16875, 0.0125, 0.03125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00625, 0.00625, 0.0125, 0.0125, 0.0125, 0.0625, 0.0875, 0.11875, 0.90625, 0.1125, 0.125, 0.15625, 0.175, 0.20625, 0.79375, 0.79375, 0.8, 0.81875, 0.79375, 0.79375, 0.79375, 0.3, 0.40625, 0.50625, 0.50625, 0.5125, 0.51875, 0.55, 0.5625, 0.56875, 0.675, 0.7125, 0.73125, 0.7625, 0.8, 0.8, 0.8, 0.79375, 0.8375, 0.90625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2373.gap.json b/pfam_gap_rates/DUF2373.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce05e15497d0026b8dd44b2af2affbd4a85b612c
--- /dev/null
+++ b/pfam_gap_rates/DUF2373.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2373", "n_seqs": 190, "length": 75, "gap_rates": [0.4, 0.13157894736842105, 0.12631578947368421, 0.12105263157894737, 0.1, 0.08947368421052632, 0.07894736842105263, 0.06315789473684211, 0.05263157894736842, 0.04736842105263158, 0.042105263157894736, 0.0, 0.868421052631579, 0.8789473684210526, 0.9, 0.9210526315789473, 0.9368421052631579, 0.9473684210526315, 0.9315789473684211, 0.9052631578947369, 0.8894736842105263, 0.868421052631579, 0.8631578947368421, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06842105263157895, 0.08421052631578947, 0.1, 0.05789473684210526, 0.021052631578947368, 0.021052631578947368, 0.02631578947368421, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.04736842105263158, 0.8578947368421053, 0.03684210526315789, 0.03684210526315789, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.07894736842105263, 0.19473684210526315, 0.7842105263157895], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2389.gap.json b/pfam_gap_rates/DUF2389.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34082b238cd5bdbefdc5fdaed053f92e2632daa0
--- /dev/null
+++ b/pfam_gap_rates/DUF2389.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2389", "n_seqs": 116, "length": 63, "gap_rates": [0.1206896551724138, 0.0603448275862069, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.04310344827586207, 0.034482758620689655, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.4827586206896552, 0.853448275862069, 0.8793103448275862, 0.5431034482758621, 0.008620689655172414, 0.034482758620689655, 0.034482758620689655, 0.0, 0.0, 0.0, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.46551724137931033, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.23275862068965517], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF239.gap.json b/pfam_gap_rates/DUF239.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2aff485edfad14d67e53102fd9ea2e9f45fd0ac
--- /dev/null
+++ b/pfam_gap_rates/DUF239.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2390.gap.json b/pfam_gap_rates/DUF2390.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd691db25518cfbedc64c422a92112301f447e55
--- /dev/null
+++ b/pfam_gap_rates/DUF2390.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2403.gap.json b/pfam_gap_rates/DUF2403.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..851d13be4c7aa35a9e479cad089e256bf86655b2
--- /dev/null
+++ b/pfam_gap_rates/DUF2403.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2403", "n_seqs": 113, "length": 73, "gap_rates": [0.8141592920353983, 0.3008849557522124, 0.1592920353982301, 0.1504424778761062, 0.1415929203539823, 0.1415929203539823, 0.13274336283185842, 0.10619469026548672, 0.10619469026548672, 0.061946902654867256, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.3805309734513274, 0.18584070796460178, 0.7787610619469026, 0.9292035398230089, 0.7787610619469026, 0.7433628318584071, 0.1415929203539823, 0.13274336283185842, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.9380530973451328, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.8672566371681416, 0.8141592920353983, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.017699115044247787, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04424778761061947, 0.49557522123893805], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2431.gap.json b/pfam_gap_rates/DUF2431.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e323631974666c2669df81d038d28c520aff4c5
--- /dev/null
+++ b/pfam_gap_rates/DUF2431.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2433.gap.json b/pfam_gap_rates/DUF2433.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eeed72abe58ec25a4263456e8ed1119605853ab5
--- /dev/null
+++ b/pfam_gap_rates/DUF2433.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2433", "n_seqs": 126, "length": 152, "gap_rates": [0.07142857142857142, 0.047619047619047616, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.3968253968253968, 0.9444444444444444, 0.9365079365079365, 0.3888888888888889, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.4365079365079365, 0.5, 0.5873015873015873, 0.8968253968253969, 0.9126984126984127, 0.9126984126984127, 0.9126984126984127, 0.9365079365079365, 0.9285714285714286, 0.9126984126984127, 0.9126984126984127, 0.9047619047619048, 0.8888888888888888, 0.5634920634920635, 0.4603174603174603, 0.4365079365079365, 0.18253968253968253, 0.2857142857142857, 0.35714285714285715, 0.31746031746031744, 0.2698412698412698, 0.25396825396825395, 0.2857142857142857, 0.2777777777777778, 0.2619047619047619, 0.19047619047619047, 0.12698412698412698, 0.0873015873015873, 0.06349206349206349, 0.06349206349206349, 0.047619047619047616, 0.047619047619047616, 0.023809523809523808, 0.0, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.07142857142857142, 0.07142857142857142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2452.gap.json b/pfam_gap_rates/DUF2452.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ffa08ff7ed5250ab0101e9e1229ad8c913f16b97
--- /dev/null
+++ b/pfam_gap_rates/DUF2452.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2452", "n_seqs": 130, "length": 157, "gap_rates": [0.8615384615384616, 0.7923076923076923, 0.7692307692307693, 0.7692307692307693, 0.7615384615384615, 0.7538461538461538, 0.7384615384615385, 0.7153846153846154, 0.7076923076923077, 0.7, 0.6846153846153846, 0.6923076923076923, 0.6615384615384615, 0.6461538461538462, 0.6153846153846154, 0.6, 0.5846153846153846, 0.5692307692307692, 0.5461538461538461, 0.5230769230769231, 0.5230769230769231, 0.5230769230769231, 0.5076923076923077, 0.5076923076923077, 0.6230769230769231, 0.5, 0.4846153846153846, 0.47692307692307695, 0.47692307692307695, 0.47692307692307695, 0.47692307692307695, 0.46923076923076923, 0.46923076923076923, 0.46923076923076923, 0.46153846153846156, 0.45384615384615384, 0.4461538461538462, 0.4230769230769231, 0.34615384615384615, 0.2846153846153846, 0.2846153846153846, 0.26153846153846155, 0.26153846153846155, 0.26153846153846155, 0.24615384615384617, 0.24615384615384617, 0.24615384615384617, 0.23846153846153847, 0.23846153846153847, 0.23076923076923078, 0.2230769230769231, 0.2230769230769231, 0.2153846153846154, 0.2076923076923077, 0.19230769230769232, 0.19230769230769232, 0.18461538461538463, 0.16923076923076924, 0.14615384615384616, 0.13076923076923078, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.13076923076923078, 0.13076923076923078, 0.13076923076923078, 0.13076923076923078, 0.12307692307692308, 0.13076923076923078, 0.13076923076923078, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.11538461538461539, 0.1076923076923077, 0.1076923076923077, 0.1076923076923077, 0.1076923076923077, 0.1076923076923077, 0.1, 0.09230769230769231, 0.09230769230769231, 0.07692307692307693, 0.05384615384615385, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.05384615384615385, 0.05384615384615385, 0.07692307692307693, 0.08461538461538462, 0.08461538461538462, 0.9384615384615385, 0.06923076923076923, 0.07692307692307693, 0.06923076923076923, 0.09230769230769231, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.07692307692307693, 0.07692307692307693, 0.06153846153846154, 0.06923076923076923, 0.13846153846153847, 0.13846153846153847, 0.13846153846153847, 0.7230769230769231, 0.2230769230769231, 0.11538461538461539, 0.1, 0.07692307692307693, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.07692307692307693, 0.16923076923076924, 0.23846153846153847, 0.2846153846153846, 0.36153846153846153, 0.4230769230769231, 0.4230769230769231, 0.43846153846153846, 0.45384615384615384, 0.46153846153846156, 0.46923076923076923, 0.49230769230769234, 0.5153846153846153, 0.5230769230769231, 0.5307692307692308, 0.5384615384615384, 0.5461538461538461, 0.5461538461538461, 0.5538461538461539, 0.5846153846153846, 0.6846153846153846], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2460.gap.json b/pfam_gap_rates/DUF2460.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..091235ce18d38f2884af700ee04e3ad88af968c0
--- /dev/null
+++ b/pfam_gap_rates/DUF2460.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2460", "n_seqs": 171, "length": 211, "gap_rates": [0.2573099415204678, 0.19298245614035087, 0.14619883040935672, 0.09941520467836257, 0.08771929824561403, 0.9473684210526315, 0.9298245614035088, 0.08771929824561403, 0.08771929824561403, 0.08187134502923976, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05847953216374269, 0.05847953216374269, 0.05847953216374269, 0.05847953216374269, 0.07017543859649122, 0.07017543859649122, 0.2982456140350877, 0.2982456140350877, 0.27485380116959063, 0.27485380116959063, 0.27485380116959063, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.06432748538011696, 0.05263157894736842, 0.05263157894736842, 0.07017543859649122, 0.07017543859649122, 0.05263157894736842, 0.07017543859649122, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.05847953216374269, 0.05847953216374269, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.04678362573099415, 0.04678362573099415, 0.9473684210526315, 0.05263157894736842, 0.21052631578947367, 0.18128654970760233, 0.17543859649122806, 0.17543859649122806, 0.1286549707602339, 0.12280701754385964, 0.11695906432748537, 0.11695906432748537, 0.06432748538011696, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.08771929824561403, 0.05263157894736842, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.9473684210526315, 0.04678362573099415, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.07602339181286549, 0.07017543859649122, 0.03508771929824561, 0.06432748538011696, 0.15789473684210525, 0.47953216374269003, 0.6374269005847953, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.1111111111111111, 0.0935672514619883, 0.09941520467836257, 0.03508771929824561, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.8304093567251462, 0.8304093567251462, 0.03508771929824561, 0.04093567251461988, 0.06432748538011696, 0.05847953216374269, 0.04093567251461988, 0.04678362573099415, 0.04093567251461988, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.04093567251461988, 0.04093567251461988, 0.05263157894736842, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04678362573099415, 0.04678362573099415, 0.05263157894736842, 0.05263157894736842, 0.04678362573099415, 0.05847953216374269, 0.05263157894736842, 0.05263157894736842, 0.05847953216374269, 0.05847953216374269, 0.05847953216374269, 0.05847953216374269, 0.05847953216374269, 0.06432748538011696, 0.08771929824561403, 0.09941520467836257, 0.27485380116959063], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2614.gap.json b/pfam_gap_rates/DUF2614.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbb55c37b9e3fb8d4b6dccdf50a1cd1256d6642b
--- /dev/null
+++ b/pfam_gap_rates/DUF2614.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2614", "n_seqs": 100, "length": 116, "gap_rates": [0.54, 0.29, 0.14, 0.12, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.08, 0.08, 0.08, 0.07, 0.07, 0.07, 0.07, 0.07, 0.06, 0.06, 0.04, 0.04, 0.03, 0.03, 0.03, 0.03, 0.03, 0.78, 0.88, 0.89, 0.78, 0.78, 0.03, 0.03, 0.02, 0.04, 0.07, 0.07, 0.06, 0.03, 0.02, 0.03, 0.01, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01, 0.01, 0.01, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01, 0.01, 0.01, 0.01, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01, 0.01, 0.04, 0.06, 0.2, 0.23, 0.25, 0.29, 0.33, 0.34, 0.35, 0.36, 0.36, 0.36, 0.36, 0.36, 0.43], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2721.gap.json b/pfam_gap_rates/DUF2721.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01ae1a7f26e146ee9ec2b70759dc6c3df70a6e93
--- /dev/null
+++ b/pfam_gap_rates/DUF2721.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2721", "n_seqs": 282, "length": 137, "gap_rates": [0.5319148936170213, 0.09219858156028368, 0.0425531914893617, 0.03546099290780142, 0.024822695035460994, 0.014184397163120567, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.014184397163120567, 0.014184397163120567, 0.010638297872340425, 0.010638297872340425, 0.3475177304964539, 0.33687943262411346, 0.3404255319148936, 0.0851063829787234, 0.12411347517730496, 0.40425531914893614, 0.5, 0.4397163120567376, 0.4929078014184397, 0.24113475177304963, 0.04609929078014184, 0.03546099290780142, 0.01773049645390071, 0.010638297872340425, 0.010638297872340425, 0.9397163120567376, 0.9397163120567376, 0.9397163120567376, 0.9468085106382979, 0.9432624113475178, 0.9397163120567376, 0.9397163120567376, 0.9397163120567376, 0.0070921985815602835, 0.0070921985815602835, 0.010638297872340425, 0.0070921985815602835, 0.0070921985815602835, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.46099290780141844, 0.450354609929078, 0.450354609929078, 0.450354609929078, 0.4574468085106383, 0.450354609929078, 0.0070921985815602835, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0070921985815602835, 0.0070921985815602835, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.01773049645390071, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.024822695035460994, 0.024822695035460994, 0.024822695035460994, 0.028368794326241134, 0.03900709219858156, 0.04964539007092199, 0.08865248226950355, 0.2127659574468085, 0.75177304964539], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2726.gap.json b/pfam_gap_rates/DUF2726.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3df987365a98606b044c2b045aa43f0602f750e
--- /dev/null
+++ b/pfam_gap_rates/DUF2726.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2726", "n_seqs": 267, "length": 134, "gap_rates": [0.6891385767790262, 0.449438202247191, 0.352059925093633, 0.2883895131086142, 0.23595505617977527, 0.15355805243445692, 0.11610486891385768, 0.10861423220973783, 0.10112359550561797, 0.10112359550561797, 0.10112359550561797, 0.09363295880149813, 0.09363295880149813, 0.09363295880149813, 0.09363295880149813, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.09363295880149813, 0.0898876404494382, 0.0898876404494382, 0.7790262172284644, 0.8801498127340824, 0.8052434456928839, 0.6816479400749064, 0.1947565543071161, 0.07865168539325842, 0.1760299625468165, 0.0749063670411985, 0.0749063670411985, 0.07116104868913857, 0.07116104868913857, 0.06741573033707865, 0.06741573033707865, 0.06741573033707865, 0.06741573033707865, 0.06741573033707865, 0.06741573033707865, 0.06741573033707865, 0.06741573033707865, 0.4157303370786517, 0.449438202247191, 0.5093632958801498, 0.42696629213483145, 0.3333333333333333, 0.24719101123595505, 0.1947565543071161, 0.10112359550561797, 0.08614232209737828, 0.0749063670411985, 0.07865168539325842, 0.08239700374531835, 0.08239700374531835, 0.06367041198501873, 0.0599250936329588, 0.06741573033707865, 0.0599250936329588, 0.0449438202247191, 0.026217228464419477, 0.018726591760299626, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.36704119850187267, 0.018726591760299626, 0.011235955056179775, 0.0149812734082397, 0.9363295880149812, 0.9213483146067416, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.0149812734082397, 0.0149812734082397, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.8801498127340824, 0.8389513108614233, 0.149812734082397, 0.12734082397003746, 0.10486891385767791, 0.8651685393258427, 0.10112359550561797, 0.07116104868913857, 0.03745318352059925, 0.0299625468164794, 0.018726591760299626, 0.02247191011235955, 0.026217228464419477, 0.026217228464419477, 0.02247191011235955, 0.0299625468164794, 0.04119850187265917, 0.03745318352059925, 0.0449438202247191, 0.04119850187265917, 0.033707865168539325, 0.026217228464419477, 0.02247191011235955, 0.02247191011235955, 0.026217228464419477, 0.026217228464419477, 0.026217228464419477, 0.026217228464419477, 0.026217228464419477, 0.026217228464419477, 0.026217228464419477, 0.11235955056179775, 0.10486891385767791, 0.07865168539325842, 0.10486891385767791, 0.11235955056179775, 0.14606741573033707, 0.16104868913857678, 0.17228464419475656, 0.19101123595505617, 0.20224719101123595, 0.23220973782771537, 0.26591760299625467, 0.29213483146067415, 0.33707865168539325, 0.37453183520599254, 0.6666666666666666, 0.7827715355805244, 0.8614232209737828], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2750.gap.json b/pfam_gap_rates/DUF2750.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2be9646114163e1bba1c04bbe812315de6e861d
--- /dev/null
+++ b/pfam_gap_rates/DUF2750.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2750", "n_seqs": 163, "length": 114, "gap_rates": [0.6134969325153374, 0.20245398773006135, 0.06748466257668712, 0.049079754601226995, 0.04294478527607362, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.9386503067484663, 0.8957055214723927, 0.147239263803681, 0.03680981595092025, 0.03680981595092025, 0.04294478527607362, 0.9202453987730062, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.6073619631901841, 0.9447852760736196, 0.5828220858895705, 0.03067484662576687, 0.03067484662576687, 0.024539877300613498, 0.31901840490797545, 0.03067484662576687, 0.03067484662576687, 0.024539877300613498, 0.9141104294478528, 0.9325153374233128, 0.8957055214723927, 0.018404907975460124, 0.018404907975460124, 0.006134969325153374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006134969325153374, 0.012269938650306749, 0.9447852760736196, 0.9325153374233128, 0.012269938650306749, 0.024539877300613498, 0.018404907975460124, 0.012269938650306749, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.006134969325153374, 0.006134969325153374, 0.012269938650306749, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.012269938650306749, 0.9079754601226994, 0.018404907975460124, 0.006134969325153374, 0.012269938650306749, 0.012269938650306749, 0.03067484662576687, 0.03680981595092025, 0.03067484662576687, 0.05521472392638037, 0.06134969325153374, 0.06748466257668712, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.07975460122699386, 0.11042944785276074, 0.13496932515337423, 0.3067484662576687, 0.4785276073619632], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2752.gap.json b/pfam_gap_rates/DUF2752.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac51bd5c5764f1c5239d248a9c8dff43e3cbfa67
--- /dev/null
+++ b/pfam_gap_rates/DUF2752.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2752", "n_seqs": 453, "length": 49, "gap_rates": [0.0728476821192053, 0.0706401766004415, 0.06622516556291391, 0.05739514348785872, 0.04856512141280353, 0.046357615894039736, 0.052980132450331126, 0.03532008830022075, 0.03532008830022075, 0.03090507726269316, 0.03090507726269316, 0.026490066225165563, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.013245033112582781, 0.008830022075055188, 0.008830022075055188, 0.002207505518763797, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002207505518763797, 0.006622516556291391, 0.008830022075055188, 0.008830022075055188, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.008830022075055188, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.011037527593818985, 0.019867549668874173, 0.03532008830022075, 0.09713024282560706, 0.31125827814569534, 0.7814569536423841], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2757.gap.json b/pfam_gap_rates/DUF2757.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41a4cd63a47758793683aa6dc817d99902b1ab37
--- /dev/null
+++ b/pfam_gap_rates/DUF2757.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2757", "n_seqs": 102, "length": 76, "gap_rates": [0.0392156862745098, 0.0392156862745098, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.10784313725490197, 0.0196078431372549, 0.00980392156862745, 0.00980392156862745, 0.0, 0.0, 0.0196078431372549, 0.0, 0.00980392156862745, 0.00980392156862745, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00980392156862745, 0.00980392156862745, 0.0392156862745098, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.0196078431372549, 0.049019607843137254, 0.058823529411764705, 0.058823529411764705, 0.08823529411764706, 0.08823529411764706, 0.09803921568627451, 0.2549019607843137, 0.39215686274509803, 0.39215686274509803, 0.4019607843137255, 0.4215686274509804, 0.4215686274509804, 0.4215686274509804, 0.4411764705882353], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2781.gap.json b/pfam_gap_rates/DUF2781.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c39648bc036155b475e2bd3c900da33a8c508772
--- /dev/null
+++ b/pfam_gap_rates/DUF2781.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2781", "n_seqs": 295, "length": 180, "gap_rates": [0.3593220338983051, 0.2576271186440678, 0.20677966101694914, 0.1864406779661017, 0.18305084745762712, 0.18305084745762712, 0.17288135593220338, 0.17288135593220338, 0.17288135593220338, 0.1694915254237288, 0.1694915254237288, 0.1694915254237288, 0.16610169491525423, 0.16610169491525423, 0.16610169491525423, 0.16271186440677965, 0.15593220338983052, 0.14576271186440679, 0.14576271186440679, 0.14576271186440679, 0.13898305084745763, 0.15254237288135594, 0.14915254237288136, 0.15254237288135594, 0.14915254237288136, 0.9355932203389831, 0.9423728813559322, 0.9355932203389831, 0.14915254237288136, 0.18305084745762712, 0.16271186440677965, 0.16271186440677965, 0.8949152542372881, 0.23728813559322035, 0.864406779661017, 0.8847457627118644, 0.9322033898305084, 0.8847457627118644, 0.8813559322033898, 0.8610169491525423, 0.2, 0.19322033898305085, 0.17288135593220338, 0.1694915254237288, 0.1694915254237288, 0.9491525423728814, 0.1423728813559322, 0.13559322033898305, 0.12542372881355932, 0.09830508474576272, 0.1152542372881356, 0.12542372881355932, 0.05423728813559322, 0.04406779661016949, 0.04406779661016949, 0.04067796610169491, 0.04067796610169491, 0.04067796610169491, 0.04067796610169491, 0.03728813559322034, 0.04067796610169491, 0.03389830508474576, 0.030508474576271188, 0.7254237288135593, 0.8101694915254237, 0.8440677966101695, 0.888135593220339, 0.8949152542372881, 0.8711864406779661, 0.8372881355932204, 0.7932203389830509, 0.688135593220339, 0.030508474576271188, 0.03389830508474576, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.02711864406779661, 0.020338983050847456, 0.020338983050847456, 0.01694915254237288, 0.01694915254237288, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.02711864406779661, 0.02711864406779661, 0.02711864406779661, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.7661016949152543, 0.0711864406779661, 0.6610169491525424, 0.8542372881355932, 0.9457627118644067, 0.9355932203389831, 0.8338983050847457, 0.3152542372881356, 0.04745762711864407, 0.0576271186440678, 0.05423728813559322, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.04406779661016949, 0.04745762711864407, 0.04745762711864407, 0.05084745762711865, 0.05423728813559322, 0.05423728813559322, 0.061016949152542375, 0.061016949152542375, 0.061016949152542375, 0.0576271186440678, 0.061016949152542375, 0.061016949152542375, 0.06440677966101695, 0.06440677966101695, 0.06440677966101695, 0.06779661016949153, 0.06779661016949153, 0.07457627118644068, 0.07796610169491526, 0.18983050847457628, 0.19661016949152543, 0.2135593220338983, 0.36271186440677966, 0.43050847457627117, 0.4711864406779661, 0.46779661016949153, 0.4915254237288136, 0.7864406779661017, 0.8067796610169492, 0.8610169491525423, 0.9152542372881356, 0.8711864406779661, 0.8508474576271187, 0.7864406779661017, 0.6677966101694915, 0.16271186440677965, 0.10847457627118644, 0.08813559322033898, 0.10847457627118644, 0.10847457627118644, 0.07796610169491526, 0.07796610169491526, 0.07796610169491526, 0.07796610169491526, 0.07796610169491526, 0.07796610169491526, 0.07796610169491526, 0.07796610169491526, 0.08135593220338982, 0.08135593220338982, 0.08135593220338982, 0.08135593220338982, 0.08135593220338982, 0.09152542372881356, 0.09830508474576272, 0.1016949152542373, 0.1016949152542373, 0.11186440677966102, 0.11186440677966102, 0.1288135593220339, 0.16271186440677965, 0.2745762711864407, 0.5050847457627119, 0.6745762711864407], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2793.gap.json b/pfam_gap_rates/DUF2793.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fae2b8cb53e4bc853c89e0eb973f37ab66c1eb23
--- /dev/null
+++ b/pfam_gap_rates/DUF2793.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2793", "n_seqs": 165, "length": 88, "gap_rates": [0.19393939393939394, 0.1696969696969697, 0.12727272727272726, 0.12121212121212122, 0.10909090909090909, 0.10909090909090909, 0.10303030303030303, 0.10303030303030303, 0.10303030303030303, 0.10303030303030303, 0.10303030303030303, 0.09696969696969697, 0.06060606060606061, 0.05454545454545454, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.12121212121212122, 0.024242424242424242, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.04242424242424243, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.9454545454545454, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.0, 0.0, 0.0, 0.0, 0.006060606060606061, 0.0, 0.0, 0.012121212121212121, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006060606060606061, 0.012121212121212121, 0.006060606060606061, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.030303030303030304, 0.03636363636363636, 0.048484848484848485, 0.07878787878787878, 0.06060606060606061, 0.593939393939394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2797.gap.json b/pfam_gap_rates/DUF2797.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d211c58238f2094c5024dfdb48e6b3f6e6a5a41
--- /dev/null
+++ b/pfam_gap_rates/DUF2797.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2797", "n_seqs": 214, "length": 266, "gap_rates": [0.3130841121495327, 0.16355140186915887, 0.13551401869158877, 0.13551401869158877, 0.13551401869158877, 0.1308411214953271, 0.1308411214953271, 0.1308411214953271, 0.16355140186915887, 0.11682242990654206, 0.11682242990654206, 0.11214953271028037, 0.2570093457943925, 0.11214953271028037, 0.11214953271028037, 0.11682242990654206, 0.9112149532710281, 0.9158878504672897, 0.9392523364485982, 0.9392523364485982, 0.9439252336448598, 0.9392523364485982, 0.9205607476635514, 0.9112149532710281, 0.9112149532710281, 0.102803738317757, 0.9485981308411215, 0.9439252336448598, 0.10747663551401869, 0.10747663551401869, 0.102803738317757, 0.24766355140186916, 0.12149532710280374, 0.16355140186915887, 0.14953271028037382, 0.17289719626168223, 0.17289719626168223, 0.1588785046728972, 0.11682242990654206, 0.08878504672897196, 0.08878504672897196, 0.08878504672897196, 0.08878504672897196, 0.08878504672897196, 0.205607476635514, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2798.gap.json b/pfam_gap_rates/DUF2798.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..234d828c5b5e580e927ed9bd58e2903febdd2ac7
--- /dev/null
+++ b/pfam_gap_rates/DUF2798.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2798", "n_seqs": 254, "length": 60, "gap_rates": [0.4763779527559055, 0.3031496062992126, 0.2125984251968504, 0.15354330708661418, 0.05511811023622047, 0.031496062992125984, 0.015748031496062992, 0.015748031496062992, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.003937007874015748, 0.007874015748031496, 0.0, 0.003937007874015748, 0.0, 0.0, 0.023622047244094488, 0.003937007874015748, 0.003937007874015748, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003937007874015748, 0.003937007874015748, 0.003937007874015748, 0.003937007874015748, 0.0, 0.0, 0.003937007874015748, 0.003937007874015748, 0.003937007874015748, 0.007874015748031496, 0.6535433070866141, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.01968503937007874, 0.027559055118110236, 0.047244094488188976, 0.07480314960629922, 0.22440944881889763, 0.3700787401574803, 0.6299212598425197], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2853.gap.json b/pfam_gap_rates/DUF2853.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed26b78b1cc2210ef47555bfd54ce8aae29512fa
--- /dev/null
+++ b/pfam_gap_rates/DUF2853.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2853", "n_seqs": 101, "length": 102, "gap_rates": [0.32673267326732675, 0.1188118811881188, 0.0891089108910891, 0.07920792079207921, 0.07920792079207921, 0.0594059405940594, 0.0594059405940594, 0.039603960396039604, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.0, 0.0, 0.27722772277227725, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.019801980198019802, 0.09900990099009901, 0.900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.039603960396039604, 0.0297029702970297, 0.2871287128712871, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.04950495049504951, 0.04950495049504951, 0.4158415841584158], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF288.gap.json b/pfam_gap_rates/DUF288.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30d5de038e9521c0ee6f90a008ae0174174d657c
--- /dev/null
+++ b/pfam_gap_rates/DUF288.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2889.gap.json b/pfam_gap_rates/DUF2889.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d22241bf037fcd119d47cfd4fc4ed2c18a318d2
--- /dev/null
+++ b/pfam_gap_rates/DUF2889.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2889", "n_seqs": 187, "length": 127, "gap_rates": [0.3048128342245989, 0.2727272727272727, 0.25668449197860965, 0.25133689839572193, 0.25133689839572193, 0.24598930481283424, 0.24598930481283424, 0.24598930481283424, 0.24064171122994651, 0.24064171122994651, 0.24064171122994651, 0.26737967914438504, 0.24064171122994651, 0.23529411764705882, 0.23529411764705882, 0.24064171122994651, 0.23529411764705882, 0.23529411764705882, 0.22994652406417113, 0.22459893048128343, 0.22459893048128343, 0.22459893048128343, 0.22459893048128343, 0.22459893048128343, 0.22459893048128343, 0.22459893048128343, 0.25668449197860965, 0.2620320855614973, 0.2620320855614973, 0.2620320855614973, 0.2620320855614973, 0.2620320855614973, 0.34759358288770054, 0.35294117647058826, 0.35294117647058826, 0.34759358288770054, 0.9037433155080213, 0.6417112299465241, 0.33689839572192515, 0.3315508021390374, 0.3155080213903743, 0.21390374331550802, 0.18716577540106952, 0.12299465240641712, 0.08021390374331551, 0.026737967914438502, 0.026737967914438502, 0.0213903743315508, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0213903743315508, 0.0106951871657754, 0.016042780748663103, 0.6684491978609626, 0.0213903743315508, 0.0106951871657754, 0.0053475935828877, 0.016042780748663103, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.7486631016042781, 0.0053475935828877, 0.0053475935828877, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.12834224598930483, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.016042780748663103, 0.0213903743315508, 0.0106951871657754, 0.0106951871657754, 0.0213903743315508, 0.0106951871657754, 0.026737967914438502, 0.0213903743315508, 0.0213903743315508, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.016042780748663103, 0.053475935828877004, 0.0748663101604278, 0.11764705882352941, 0.15508021390374332, 0.18716577540106952, 0.25133689839572193, 0.28342245989304815, 0.3315508021390374], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2929.gap.json b/pfam_gap_rates/DUF2929.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..319c4c90060fa5ca0a636c623264c2551e390924
--- /dev/null
+++ b/pfam_gap_rates/DUF2929.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2929", "n_seqs": 138, "length": 56, "gap_rates": [0.18115942028985507, 0.10869565217391304, 0.09420289855072464, 0.043478260869565216, 0.021739130434782608, 0.021739130434782608, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.043478260869565216, 0.14492753623188406, 0.2318840579710145, 0.39855072463768115, 0.8260869565217391], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2934.gap.json b/pfam_gap_rates/DUF2934.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b72f02016ff8e51528a3353dd3847fec1718e841
--- /dev/null
+++ b/pfam_gap_rates/DUF2934.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2934", "n_seqs": 200, "length": 37, "gap_rates": [0.675, 0.355, 0.135, 0.06, 0.025, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005, 0.01, 0.005, 0.06, 0.0, 0.0, 0.0, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.01, 0.02, 0.05, 0.105, 0.285, 0.75], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2949.gap.json b/pfam_gap_rates/DUF2949.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..290ec094149bd047fa321ca19346ecb8694ff7d1
--- /dev/null
+++ b/pfam_gap_rates/DUF2949.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2949", "n_seqs": 128, "length": 56, "gap_rates": [0.5625, 0.2265625, 0.0859375, 0.046875, 0.046875, 0.03125, 0.03125, 0.0234375, 0.015625, 0.015625, 0.015625, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.015625, 0.0078125, 0.0078125, 0.015625, 0.0078125, 0.0078125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0234375, 0.0703125, 0.2421875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF295.gap.json b/pfam_gap_rates/DUF295.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..286ae81f338fa25f3da5c0103c97bb06ccfeace5
--- /dev/null
+++ b/pfam_gap_rates/DUF295.gap.json
@@ -0,0 +1 @@
+{"family": "DUF295", "n_seqs": 949, "length": 71, "gap_rates": [0.6796628029504742, 0.31401475237091675, 0.15489989462592202, 0.08008429926238145, 0.0368809272918862, 0.02107481559536354, 0.0136986301369863, 0.9251844046364595, 0.006322444678609062, 0.004214963119072708, 0.002107481559536354, 0.001053740779768177, 0.001053740779768177, 0.001053740779768177, 0.002107481559536354, 0.002107481559536354, 0.002107481559536354, 0.032665964172813484, 0.9325605900948367, 0.022128556375131718, 0.005268703898840885, 0.009483667017913594, 0.004214963119072708, 0.9473129610115911, 0.009483667017913594, 0.007376185458377239, 0.006322444678609062, 0.015806111696522657, 0.04636459430979979, 0.9093782929399368, 0.8545837723919916, 0.11907270811380401, 0.08008429926238145, 0.101159114857745, 0.08008429926238145, 0.002107481559536354, 0.018967334035827187, 0.02423603793466807, 0.006322444678609062, 0.01053740779768177, 0.015806111696522657, 0.08429926238145416, 0.7892518440463646, 0.9251844046364595, 0.8693361433087461, 0.6628029504741834, 0.6059009483667018, 0.2065331928345627, 0.32982086406743943, 0.3993677555321391, 0.48050579557428874, 0.5542676501580611, 0.6059009483667018, 0.6691253951527925, 0.7239199157007377, 0.8914646996838778, 0.9293993677555321, 0.7766069546891464, 0.6996838777660696, 0.6332982086406744, 0.5900948366701791, 0.5089567966280295, 0.42781875658587987, 0.3656480505795574, 0.28240252897787144, 0.256059009483667, 0.3129610115911486, 0.3203371970495258, 0.33719704952581664, 0.40463645943098, 0.559536354056902], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2953.gap.json b/pfam_gap_rates/DUF2953.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03ebe051317640e841bd217818dab5ca43278d96
--- /dev/null
+++ b/pfam_gap_rates/DUF2953.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2953", "n_seqs": 285, "length": 55, "gap_rates": [0.5368421052631579, 0.21403508771929824, 0.05964912280701754, 0.031578947368421054, 0.02456140350877193, 0.007017543859649123, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.021052631578947368, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.007017543859649123, 0.0035087719298245615, 0.007017543859649123, 0.0035087719298245615, 0.0, 0.0, 0.014035087719298246, 0.18596491228070175, 0.1824561403508772, 0.20701754385964913, 0.25263157894736843, 0.26666666666666666, 0.27017543859649124, 0.2807017543859649, 0.28771929824561404, 0.2807017543859649, 0.2771929824561403, 0.9017543859649123, 0.5298245614035088, 0.16140350877192983, 0.028070175438596492, 0.02456140350877193, 0.010526315789473684, 0.007017543859649123, 0.014035087719298246, 0.017543859649122806, 0.021052631578947368, 0.021052631578947368, 0.02456140350877193, 0.031578947368421054, 0.05263157894736842, 0.10175438596491228, 0.17894736842105263, 0.2771929824561403, 0.34035087719298246, 0.47368421052631576, 0.656140350877193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3006.gap.json b/pfam_gap_rates/DUF3006.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..350759944c8c0d856a9cd579c78f6ab3337403bb
--- /dev/null
+++ b/pfam_gap_rates/DUF3006.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3006", "n_seqs": 276, "length": 78, "gap_rates": [0.35144927536231885, 0.07608695652173914, 0.036231884057971016, 0.03260869565217391, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.014492753623188406, 0.9456521739130435, 0.010869565217391304, 0.007246376811594203, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.0036231884057971015, 0.007246376811594203, 0.007246376811594203, 0.12681159420289856, 0.9384057971014492, 0.7282608695652174, 0.050724637681159424, 0.021739130434782608, 0.0, 0.927536231884058, 0.0036231884057971015, 0.010869565217391304, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.057971014492753624, 0.0036231884057971015, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9492753623188406, 0.8297101449275363, 0.3333333333333333, 0.35144927536231885, 0.8188405797101449, 0.30434782608695654, 0.8333333333333334, 0.9311594202898551, 0.8442028985507246, 0.822463768115942, 0.04710144927536232, 0.043478260869565216, 0.014492753623188406, 0.014492753623188406, 0.018115942028985508, 0.025362318840579712, 0.025362318840579712, 0.03260869565217391, 0.036231884057971016, 0.036231884057971016, 0.043478260869565216, 0.04710144927536232, 0.04710144927536232, 0.057971014492753624, 0.057971014492753624, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.07608695652173914, 0.09782608695652174, 0.11231884057971014, 0.2028985507246377, 0.37318840579710144], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF305.gap.json b/pfam_gap_rates/DUF305.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..004a1c1ef2a700d2dceafa31b2007c950f7def98
--- /dev/null
+++ b/pfam_gap_rates/DUF305.gap.json
@@ -0,0 +1 @@
+{"family": "DUF305", "n_seqs": 1006, "length": 174, "gap_rates": [0.5059642147117296, 0.43439363817097415, 0.3956262425447316, 0.38966202783300197, 0.3856858846918489, 0.3856858846918489, 0.3817097415506958, 0.378727634194831, 0.378727634194831, 0.378727634194831, 0.37773359840954274, 0.3757455268389662, 0.3757455268389662, 0.3757455268389662, 0.3757455268389662, 0.3757455268389662, 0.3757455268389662, 0.37375745526838966, 0.37375745526838966, 0.3727634194831014, 0.37077534791252487, 0.37773359840954274, 0.4532803180914513, 0.9085487077534792, 0.4423459244532803, 0.3757455268389662, 0.37375745526838966, 0.37673956262425445, 0.3667992047713718, 0.3667992047713718, 0.3667992047713718, 0.3667992047713718, 0.3667992047713718, 0.3667992047713718, 0.3648111332007952, 0.36381709741550694, 0.36381709741550694, 0.36381709741550694, 0.36381709741550694, 0.36381709741550694, 0.36381709741550694, 0.36381709741550694, 0.36381709741550694, 0.36381709741550694, 0.36182902584493043, 0.36083499005964215, 0.35984095427435386, 0.35984095427435386, 0.35984095427435386, 0.3558648111332008, 0.3558648111332008, 0.35685884691848907, 0.35685884691848907, 0.36083499005964215, 0.36381709741550694, 0.3667992047713718, 0.3727634194831014, 0.3817097415506958, 0.38469184890656066, 0.3856858846918489, 0.38071570576540753, 0.3856858846918489, 0.38767395626242546, 0.3946322067594433, 0.3956262425447316, 0.794234592445328, 0.8250497017892644, 0.8538767395626242, 0.8638170974155069, 0.8777335984095428, 0.9005964214711729, 0.9224652087475149, 0.941351888667992, 0.9433399602385686, 0.9333996023856859, 0.9125248508946322, 0.8876739562624254, 0.8697813121272365, 0.8588469184890656, 0.8369781312127237, 0.8071570576540755, 0.7803180914512923, 0.6829025844930418, 0.6063618290258449, 0.5616302186878728, 0.5218687872763419, 0.4831013916500994, 0.45129224652087474, 0.41848906560636184, 0.3926441351888668, 0.3648111332007952, 0.33101391650099404, 0.30417495029821073, 0.294234592445328, 0.2852882703777336, 0.2783300198807157, 0.27335984095427435, 0.26938369781312127, 0.2673956262425447, 0.28727634194831014, 0.27335984095427435, 0.27137176938369784, 0.2664015904572565, 0.2624254473161034, 0.2554671968190855, 0.2584493041749503, 0.25745526838966204, 0.2753479125248509, 0.2783300198807157, 0.3091451292246521, 0.3290258449304175, 0.3359840954274354, 0.3628230616302187, 0.30019880715705766, 0.9463220675944334, 0.9493041749502982, 0.9294234592445328, 0.21669980119284293, 0.20974155069582506, 0.18687872763419483, 0.14512922465208747, 0.14214711729622267, 0.13916500994035785, 0.13817097415506957, 0.13817097415506957, 0.13817097415506957, 0.13817097415506957, 0.13817097415506957, 0.13817097415506957, 0.13916500994035785, 0.13916500994035785, 0.13916500994035785, 0.13916500994035785, 0.13916500994035785, 0.13916500994035785, 0.13916500994035785, 0.13916500994035785, 0.14314115308151093, 0.147117296222664, 0.1540755467196819, 0.1550695825049702, 0.15606361829025844, 0.16302186878727634, 0.20178926441351888, 0.9453280318091452, 0.17992047713717693, 0.13916500994035785, 0.14015904572564614, 0.14015904572564614, 0.14015904572564614, 0.14015904572564614, 0.14015904572564614, 0.14015904572564614, 0.14015904572564614, 0.14015904572564614, 0.14015904572564614, 0.14214711729622267, 0.14214711729622267, 0.14314115308151093, 0.14314115308151093, 0.14314115308151093, 0.1441351888667992, 0.1441351888667992, 0.14512922465208747, 0.14612326043737575, 0.14612326043737575, 0.147117296222664, 0.147117296222664, 0.1481113320079523, 0.15109343936381708, 0.16003976143141152, 0.18886679920477137, 0.23757455268389663, 0.5178926441351889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3068.gap.json b/pfam_gap_rates/DUF3068.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96c14593b2f8de8be2ca3e02739cf83db713f9a7
--- /dev/null
+++ b/pfam_gap_rates/DUF3068.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3068", "n_seqs": 125, "length": 436, "gap_rates": [0.728, 0.328, 0.272, 0.184, 0.16, 0.136, 0.096, 0.096, 0.088, 0.064, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.184, 0.056, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.176, 0.176, 0.168, 0.168, 0.168, 0.472, 0.872, 0.912, 0.928, 0.936, 0.936, 0.936, 0.936, 0.928, 0.872, 0.84, 0.064, 0.064, 0.064, 0.064, 0.064, 0.072, 0.072, 0.064, 0.064, 0.072, 0.064, 0.056, 0.208, 0.6, 0.536, 0.52, 0.392, 0.56, 0.712, 0.832, 0.872, 0.888, 0.888, 0.904, 0.92, 0.92, 0.936, 0.936, 0.936, 0.92, 0.92, 0.912, 0.888, 0.888, 0.872, 0.864, 0.8, 0.632, 0.48, 0.072, 0.072, 0.064, 0.064, 0.064, 0.064, 0.056, 0.056, 0.056, 0.056, 0.072, 0.056, 0.056, 0.072, 0.664, 0.096, 0.064, 0.064, 0.088, 0.064, 0.848, 0.864, 0.88, 0.888, 0.88, 0.856, 0.792, 0.056, 0.056, 0.056, 0.064, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.064, 0.072, 0.064, 0.16, 0.304, 0.392, 0.424, 0.392, 0.704, 0.776, 0.8, 0.84, 0.88, 0.92, 0.92, 0.928, 0.944, 0.944, 0.928, 0.928, 0.92, 0.912, 0.864, 0.816, 0.8, 0.72, 0.624, 0.08, 0.072, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.048, 0.576, 0.64, 0.696, 0.792, 0.84, 0.864, 0.8, 0.696, 0.672, 0.624, 0.56, 0.4, 0.4, 0.4, 0.288, 0.152, 0.12, 0.088, 0.064, 0.056, 0.056, 0.048, 0.104, 0.104, 0.088, 0.08, 0.08, 0.072, 0.864, 0.032, 0.032, 0.032, 0.032, 0.048, 0.04, 0.04, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.928, 0.032, 0.04, 0.032, 0.032, 0.032, 0.032, 0.032, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.072, 0.056, 0.056, 0.056, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.848, 0.888, 0.896, 0.912, 0.912, 0.904, 0.888, 0.864, 0.848, 0.032, 0.064, 0.064, 0.064, 0.064, 0.048, 0.528, 0.528, 0.664, 0.8, 0.816, 0.88, 0.904, 0.912, 0.92, 0.92, 0.92, 0.92, 0.92, 0.912, 0.904, 0.872, 0.8, 0.76, 0.552, 0.528, 0.528, 0.464, 0.416, 0.384, 0.216, 0.216, 0.216, 0.152, 0.144, 0.136, 0.16, 0.168, 0.12, 0.168, 0.2, 0.232, 0.456, 0.664, 0.808, 0.88, 0.888, 0.928, 0.936, 0.944, 0.944, 0.944, 0.944, 0.936, 0.928, 0.928, 0.88, 0.856, 0.736, 0.584, 0.28, 0.216, 0.184, 0.168, 0.064, 0.064, 0.048, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.048, 0.048, 0.04, 0.04, 0.136, 0.128, 0.12, 0.072, 0.112, 0.088, 0.136, 0.272, 0.624, 0.592, 0.544, 0.776, 0.808, 0.824, 0.944, 0.872, 0.816, 0.8, 0.768, 0.072, 0.056, 0.056, 0.056, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.168, 0.136, 0.048, 0.048, 0.064, 0.056, 0.056, 0.144, 0.056, 0.08, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.056, 0.064, 0.064, 0.064, 0.064, 0.064, 0.064, 0.064, 0.072, 0.08, 0.112, 0.624], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF31.gap.json b/pfam_gap_rates/DUF31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a938d568e17092aa112589380e3b13207bd93259
--- /dev/null
+++ b/pfam_gap_rates/DUF31.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3137.gap.json b/pfam_gap_rates/DUF3137.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0e8a64ca0394726e79e9254776d1a45d844612e
--- /dev/null
+++ b/pfam_gap_rates/DUF3137.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF320.gap.json b/pfam_gap_rates/DUF320.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c550068ec2dc849bfa304f1edae3c741532d9d16
--- /dev/null
+++ b/pfam_gap_rates/DUF320.gap.json
@@ -0,0 +1 @@
+{"family": "DUF320", "n_seqs": 238, "length": 57, "gap_rates": [0.453781512605042, 0.3865546218487395, 0.3025210084033613, 0.25210084033613445, 0.2184873949579832, 0.18487394957983194, 0.15546218487394958, 0.13025210084033614, 0.12184873949579832, 0.10504201680672269, 0.10084033613445378, 0.9453781512605042, 0.07142857142857142, 0.06722689075630252, 0.06302521008403361, 0.05042016806722689, 0.046218487394957986, 0.037815126050420166, 0.029411764705882353, 0.02100840336134454, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.004201680672268907, 0.008403361344537815, 0.008403361344537815, 0.004201680672268907, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.012605042016806723, 0.008403361344537815, 0.07563025210084033, 0.10084033613445378, 0.14705882352941177, 0.1722689075630252, 0.19327731092436976, 0.19747899159663865, 0.20168067226890757, 0.21428571428571427, 0.2184873949579832, 0.2184873949579832, 0.25210084033613445, 0.3319327731092437], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3267.gap.json b/pfam_gap_rates/DUF3267.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..326d66f1a282b211ea003eed79371e874bda2c03
--- /dev/null
+++ b/pfam_gap_rates/DUF3267.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3267", "n_seqs": 223, "length": 123, "gap_rates": [0.8475336322869955, 0.19730941704035873, 0.04932735426008968, 0.03139013452914798, 0.03139013452914798, 0.026905829596412557, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.02242152466367713, 0.15695067264573992, 0.242152466367713, 0.21524663677130046, 0.27802690582959644, 0.2556053811659193, 0.13004484304932734, 0.053811659192825115, 0.02242152466367713, 0.026905829596412557, 0.026905829596412557, 0.03139013452914798, 0.25112107623318386, 0.21524663677130046, 0.6233183856502242, 0.5426008968609866, 0.08520179372197309, 0.9237668161434978, 0.8654708520179372, 0.053811659192825115, 0.026905829596412557, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.008968609865470852, 0.004484304932735426, 0.008968609865470852, 0.008968609865470852, 0.5695067264573991, 0.017937219730941704, 0.017937219730941704, 0.008968609865470852, 0.008968609865470852, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.004484304932735426, 0.004484304932735426, 0.04035874439461883, 0.004484304932735426, 0.004484304932735426, 0.026905829596412557, 0.004484304932735426, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.017937219730941704, 0.013452914798206279, 0.9417040358744395, 0.017937219730941704, 0.017937219730941704, 0.3094170403587444, 0.3542600896860987, 0.7937219730941704, 0.8609865470852018, 0.9372197309417041, 0.9417040358744395, 0.9461883408071748, 0.9417040358744395, 0.905829596412556, 0.8251121076233184, 0.7309417040358744, 0.013452914798206279, 0.026905829596412557, 0.026905829596412557, 0.026905829596412557, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.026905829596412557, 0.03139013452914798, 0.03139013452914798, 0.03587443946188341, 0.03587443946188341, 0.03587443946188341, 0.04035874439461883, 0.04035874439461883, 0.7443946188340808, 0.06278026905829596, 0.06726457399103139, 0.06726457399103139, 0.05829596412556054, 0.07174887892376682, 0.09417040358744394, 0.11210762331838565, 0.11659192825112108, 0.14349775784753363, 0.15246636771300448, 0.19282511210762332, 0.24663677130044842, 0.33183856502242154, 0.5560538116591929, 0.8834080717488789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF327.gap.json b/pfam_gap_rates/DUF327.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9c55466b2b5d3268e86bfcb99c8030ae7013307
--- /dev/null
+++ b/pfam_gap_rates/DUF327.gap.json
@@ -0,0 +1 @@
+{"family": "DUF327", "n_seqs": 255, "length": 149, "gap_rates": [0.9294117647058824, 0.9176470588235294, 0.8470588235294118, 0.7568627450980392, 0.7098039215686275, 0.6431372549019608, 0.5647058823529412, 0.49411764705882355, 0.4392156862745098, 0.42745098039215684, 0.3803921568627451, 0.3686274509803922, 0.3215686274509804, 0.2980392156862745, 0.2784313725490196, 0.2235294117647059, 0.8941176470588236, 0.9176470588235294, 0.8627450980392157, 0.1803921568627451, 0.10588235294117647, 0.03529411764705882, 0.03137254901960784, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.8392156862745098, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.03137254901960784, 0.0392156862745098, 0.0392156862745098, 0.9058823529411765, 0.9490196078431372, 0.9450980392156862, 0.9058823529411765, 0.027450980392156862, 0.027450980392156862, 0.023529411764705882, 0.01568627450980392, 0.03529411764705882, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00784313725490196, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00784313725490196, 0.01568627450980392, 0.00784313725490196, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.011764705882352941, 0.00784313725490196, 0.011764705882352941, 0.023529411764705882, 0.023529411764705882, 0.17254901960784313, 0.17254901960784313, 0.17254901960784313, 0.9411764705882353, 0.0392156862745098, 0.011764705882352941, 0.00392156862745098, 0.0, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.011764705882352941, 0.00784313725490196, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.01568627450980392, 0.01568627450980392, 0.01568627450980392, 0.011764705882352941, 0.0196078431372549, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.01568627450980392, 0.03529411764705882, 0.19215686274509805], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3305.gap.json b/pfam_gap_rates/DUF3305.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64875c5bbfdacab831491977d3c2b041a1eba882
--- /dev/null
+++ b/pfam_gap_rates/DUF3305.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3305", "n_seqs": 101, "length": 157, "gap_rates": [0.6831683168316832, 0.297029702970297, 0.297029702970297, 0.2871287128712871, 0.27722772277227725, 0.22772277227722773, 0.22772277227722773, 0.21782178217821782, 0.2079207920792079, 0.19801980198019803, 0.19801980198019803, 0.2079207920792079, 0.9306930693069307, 0.9306930693069307, 0.900990099009901, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.16831683168316833, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.1485148514851485, 0.1485148514851485, 0.13861386138613863, 0.13861386138613863, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.49504950495049505, 0.7623762376237624, 0.801980198019802, 0.8217821782178217, 0.7920792079207921, 0.7425742574257426, 0.22772277227722773, 0.16831683168316833, 0.22772277227722773, 0.46534653465346537, 0.43564356435643564, 0.39603960396039606, 0.900990099009901, 0.693069306930693, 0.32673267326732675, 0.21782178217821782, 0.2079207920792079, 0.1782178217821782, 0.16831683168316833, 0.1485148514851485, 0.13861386138613863, 0.1485148514851485, 0.1485148514851485, 0.1485148514851485, 0.15841584158415842, 0.16831683168316833, 0.16831683168316833, 0.16831683168316833, 0.1188118811881188, 0.10891089108910891, 0.10891089108910891, 0.07920792079207921, 0.0594059405940594, 0.039603960396039604, 0.039603960396039604, 0.0297029702970297, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.7623762376237624, 0.8514851485148515, 0.8217821782178217, 0.6831683168316832, 0.5544554455445545, 0.32673267326732675, 0.1485148514851485, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.6039603960396039, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.9306930693069307, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0297029702970297, 0.0594059405940594, 0.16831683168316833], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3320.gap.json b/pfam_gap_rates/DUF3320.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43f38d8fdb1f65fb43dfd8b57feb036931162704
--- /dev/null
+++ b/pfam_gap_rates/DUF3320.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3320", "n_seqs": 109, "length": 50, "gap_rates": [0.5963302752293578, 0.3853211009174312, 0.24770642201834864, 0.22935779816513763, 0.2018348623853211, 0.4036697247706422, 0.1651376146788991, 0.14678899082568808, 0.11926605504587157, 0.11009174311926606, 0.06422018348623854, 0.05504587155963303, 0.05504587155963303, 0.03669724770642202, 0.027522935779816515, 0.01834862385321101, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009174311926605505, 0.0, 0.0, 0.027522935779816515, 0.08256880733944955, 0.10091743119266056, 0.10091743119266056, 0.1651376146788991, 0.25688073394495414, 0.6880733944954128], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3336.gap.json b/pfam_gap_rates/DUF3336.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cafe16016b93873c94c2aa3c523151aae4a75be
--- /dev/null
+++ b/pfam_gap_rates/DUF3336.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3363.gap.json b/pfam_gap_rates/DUF3363.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42ff7540353f25b05763dadd5bd7c967d9003721
--- /dev/null
+++ b/pfam_gap_rates/DUF3363.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3369.gap.json b/pfam_gap_rates/DUF3369.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4d2bace98005081d9af40edc5a51cd58755aed9
--- /dev/null
+++ b/pfam_gap_rates/DUF3369.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3394.gap.json b/pfam_gap_rates/DUF3394.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa21db7cc32bfd1eecfe5f941a1b8ac433325f63
--- /dev/null
+++ b/pfam_gap_rates/DUF3394.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3405.gap.json b/pfam_gap_rates/DUF3405.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0fe9b6120dd706e85f1b19e9c12411d3f12540c9
--- /dev/null
+++ b/pfam_gap_rates/DUF3405.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3435.gap.json b/pfam_gap_rates/DUF3435.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5674ca83abf5826f3d65a89e8df76526a2a411e6
--- /dev/null
+++ b/pfam_gap_rates/DUF3435.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3449.gap.json b/pfam_gap_rates/DUF3449.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5e727929999cbe598e7fe9e587f66c34c8722db
--- /dev/null
+++ b/pfam_gap_rates/DUF3449.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3467.gap.json b/pfam_gap_rates/DUF3467.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fd2459e675b064ade8f64b8e30f6d9de750b0d0
--- /dev/null
+++ b/pfam_gap_rates/DUF3467.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3467", "n_seqs": 303, "length": 99, "gap_rates": [0.9405940594059405, 0.8844884488448845, 0.8316831683168316, 0.801980198019802, 0.759075907590759, 0.7260726072607261, 0.7293729372937293, 0.7194719471947195, 0.6501650165016502, 0.5247524752475248, 0.429042904290429, 0.35313531353135313, 0.9306930693069307, 0.19801980198019803, 0.1551155115511551, 0.132013201320132, 0.12211221122112212, 0.11551155115511551, 0.0858085808580858, 0.0858085808580858, 0.07590759075907591, 0.07260726072607261, 0.10561056105610561, 0.0462046204620462, 0.0429042904290429, 0.039603960396039604, 0.036303630363036306, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0165016501650165, 0.0165016501650165, 0.013201320132013201, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.8448844884488449, 0.8976897689768977, 0.8646864686468647, 0.834983498349835, 0.0462046204620462, 0.026402640264026403, 0.9405940594059405, 0.0231023102310231, 0.019801980198019802, 0.8316831683168316, 0.09570957095709572, 0.08250825082508251, 0.0297029702970297, 0.019801980198019802, 0.933993399339934, 0.0165016501650165, 0.07590759075907591, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0033003300330033004, 0.009900990099009901, 0.0165016501650165, 0.0297029702970297, 0.036303630363036306, 0.0594059405940594, 0.10231023102310231, 0.10561056105610561, 0.12871287128712872, 0.1419141914191419, 0.24422442244224424, 0.8976897689768977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3470.gap.json b/pfam_gap_rates/DUF3470.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a96aa1a0415f934021a7e788b0ab7e161d4bbd37
--- /dev/null
+++ b/pfam_gap_rates/DUF3470.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3470", "n_seqs": 507, "length": 44, "gap_rates": [0.44970414201183434, 0.08875739644970414, 0.009861932938856016, 0.009861932938856016, 0.007889546351084813, 0.0039447731755424065, 0.0039447731755424065, 0.0039447731755424065, 0.0039447731755424065, 0.0039447731755424065, 0.0019723865877712033, 0.0019723865877712033, 0.9467455621301775, 0.9447731755424064, 0.0019723865877712033, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.0019723865877712033, 0.005917159763313609, 0.007889546351084813, 0.015779092702169626, 0.01775147928994083, 0.01775147928994083, 0.01972386587771203, 0.01972386587771203, 0.01972386587771203, 0.01972386587771203, 0.01972386587771203, 0.01972386587771203, 0.01972386587771203, 0.021696252465483234, 0.023668639053254437, 0.023668639053254437, 0.027613412228796843, 0.1794871794871795, 0.358974358974359], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3480.gap.json b/pfam_gap_rates/DUF3480.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce0c26cf491c02929ee6d12dd21586c5de645b4a
--- /dev/null
+++ b/pfam_gap_rates/DUF3480.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3494.gap.json b/pfam_gap_rates/DUF3494.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..370461a4c3ec88e6dd4c49e0ef1eb879113e75bb
--- /dev/null
+++ b/pfam_gap_rates/DUF3494.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3499.gap.json b/pfam_gap_rates/DUF3499.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54dc4c757054c39bbb79e0be2a85d1516cdfdb0e
--- /dev/null
+++ b/pfam_gap_rates/DUF3499.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3504.gap.json b/pfam_gap_rates/DUF3504.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b88442742361f1fc7e32ae786e506a20b3bb7277
--- /dev/null
+++ b/pfam_gap_rates/DUF3504.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3511.gap.json b/pfam_gap_rates/DUF3511.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2815197ef35753b86a01367bebd24038c084d77
--- /dev/null
+++ b/pfam_gap_rates/DUF3511.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3511", "n_seqs": 195, "length": 45, "gap_rates": [0.5384615384615384, 0.10256410256410256, 0.03076923076923077, 0.015384615384615385, 0.010256410256410256, 0.010256410256410256, 0.010256410256410256, 0.010256410256410256, 0.005128205128205128, 0.005128205128205128, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.010256410256410256, 0.010256410256410256, 0.010256410256410256, 0.010256410256410256, 0.005128205128205128, 0.005128205128205128, 0.010256410256410256, 0.015384615384615385, 0.015384615384615385, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.041025641025641026, 0.05128205128205128, 0.06153846153846154, 0.09743589743589744, 0.12307692307692308, 0.14358974358974358, 0.1794871794871795, 0.30256410256410254], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3520.gap.json b/pfam_gap_rates/DUF3520.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e013b25401d63a7f06e3c63de7320d76bbe392ae
--- /dev/null
+++ b/pfam_gap_rates/DUF3520.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3520", "n_seqs": 216, "length": 194, "gap_rates": [0.35648148148148145, 0.10648148148148148, 0.07407407407407407, 0.06481481481481481, 0.05555555555555555, 0.046296296296296294, 0.027777777777777776, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.023148148148148147, 0.023148148148148147, 0.037037037037037035, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.018518518518518517, 0.018518518518518517, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.027777777777777776, 0.023148148148148147, 0.027777777777777776, 0.023148148148148147, 0.041666666666666664, 0.06481481481481481, 0.08333333333333333, 0.10648148148148148, 0.32407407407407407, 0.6574074074074074, 0.9027777777777778, 0.7361111111111112, 0.6111111111111112, 0.2361111111111111, 0.2361111111111111, 0.2175925925925926, 0.2175925925925926, 0.2175925925925926, 0.2175925925925926, 0.2175925925925926, 0.2175925925925926, 0.20833333333333334, 0.2037037037037037, 0.21296296296296297, 0.21296296296296297, 0.2175925925925926, 0.2037037037037037, 0.7685185185185185, 0.8935185185185185, 0.9305555555555556, 0.9074074074074074, 0.8472222222222222, 0.625, 0.4074074074074074, 0.22685185185185186, 0.12962962962962962, 0.06481481481481481, 0.05555555555555555, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.08333333333333333, 0.7777777777777778, 0.6851851851851852, 0.35185185185185186, 0.21296296296296297, 0.11574074074074074, 0.06018518518518518, 0.037037037037037035, 0.046296296296296294, 0.05092592592592592, 0.041666666666666664, 0.041666666666666664, 0.037037037037037035, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.032407407407407406, 0.041666666666666664, 0.037037037037037035, 0.05092592592592592, 0.05092592592592592, 0.05092592592592592, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.05092592592592592, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.05555555555555555, 0.12037037037037036, 0.12962962962962962, 0.125, 0.1111111111111111, 0.06018518518518518, 0.05555555555555555, 0.05555555555555555, 0.06481481481481481, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.07407407407407407, 0.08333333333333333, 0.12037037037037036, 0.2175925925925926, 0.4675925925925926, 0.6759259259259259], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3535.gap.json b/pfam_gap_rates/DUF3535.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d3c98d1bb96551f0a48eb2c5936916f4bd997c6
--- /dev/null
+++ b/pfam_gap_rates/DUF3535.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF3553.gap.json b/pfam_gap_rates/DUF3553.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86d691f8294ff1d1c2c9cd382ed03362e751d95f
--- /dev/null
+++ b/pfam_gap_rates/DUF3553.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF3591.gap.json b/pfam_gap_rates/DUF3591.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60622d077a303272a169ee54921105613ce32d9c
--- /dev/null
+++ b/pfam_gap_rates/DUF3591.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3605.gap.json b/pfam_gap_rates/DUF3605.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9957bb935cc7403e35d977d456762b5347d41813
--- /dev/null
+++ b/pfam_gap_rates/DUF3605.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3656.gap.json b/pfam_gap_rates/DUF3656.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9b1610039eb3b8a82c67cc4d8eeeea81f7cc2f5
--- /dev/null
+++ b/pfam_gap_rates/DUF3656.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF368.gap.json b/pfam_gap_rates/DUF368.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3258ace4329a5371860c033275308f8a71fa515
--- /dev/null
+++ b/pfam_gap_rates/DUF368.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3700.gap.json b/pfam_gap_rates/DUF3700.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0ef8cd63fdf98925217db2a622a913c5f187418
--- /dev/null
+++ b/pfam_gap_rates/DUF3700.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3754.gap.json b/pfam_gap_rates/DUF3754.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50efa8a64f656172600a1e0ddef84106a533b72a
--- /dev/null
+++ b/pfam_gap_rates/DUF3754.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF378.gap.json b/pfam_gap_rates/DUF378.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63cea0e0acd77985915fee68c710ba7ac0797a15
--- /dev/null
+++ b/pfam_gap_rates/DUF378.gap.json
@@ -0,0 +1 @@
+{"family": "DUF378", "n_seqs": 603, "length": 62, "gap_rates": [0.6666666666666666, 0.35655058043117743, 0.08955223880597014, 0.05472636815920398, 0.03482587064676617, 0.02155887230514096, 0.014925373134328358, 0.013266998341625208, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.006633499170812604, 0.003316749585406302, 0.03316749585406302, 0.003316749585406302, 0.003316749585406302, 0.003316749585406302, 0.003316749585406302, 0.01990049751243781, 0.02155887230514096, 0.001658374792703151, 0.001658374792703151, 0.001658374792703151, 0.0, 0.0, 0.527363184079602, 0.9386401326699834, 0.9353233830845771, 0.07131011608623548, 0.02321724709784411, 0.013266998341625208, 0.006633499170812604, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.006633499170812604, 0.008291873963515755, 0.009950248756218905, 0.024875621890547265, 0.06135986733001658, 0.23714759535655058, 0.30845771144278605, 0.6500829187396352], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF385.gap.json b/pfam_gap_rates/DUF385.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05fb86778fb5cb7703ea5d0f1bdd42ce6d4e1310
--- /dev/null
+++ b/pfam_gap_rates/DUF385.gap.json
@@ -0,0 +1 @@
+{"family": "DUF385", "n_seqs": 708, "length": 134, "gap_rates": [0.8601694915254238, 0.7937853107344632, 0.713276836158192, 0.6680790960451978, 0.6370056497175142, 0.615819209039548, 0.5437853107344632, 0.4985875706214689, 0.4830508474576271, 0.4689265536723164, 0.4576271186440678, 0.4392655367231638, 0.4293785310734463, 0.4194915254237288, 0.4025423728813559, 0.3757062146892655, 0.3545197740112994, 0.3389830508474576, 0.3107344632768362, 0.2838983050847458, 0.2542372881355932, 0.9251412429378532, 0.8884180790960452, 0.2019774011299435, 0.2627118644067797, 0.20903954802259886, 0.9449152542372882, 0.09322033898305085, 0.06638418079096045, 0.04943502824858757, 0.025423728813559324, 0.022598870056497175, 0.01977401129943503, 0.01694915254237288, 0.01694915254237288, 0.018361581920903956, 0.018361581920903956, 0.018361581920903956, 0.01694915254237288, 0.01694915254237288, 0.018361581920903956, 0.018361581920903956, 0.018361581920903956, 0.018361581920903956, 0.01694915254237288, 0.015536723163841809, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.015536723163841809, 0.015536723163841809, 0.014124293785310734, 0.014124293785310734, 0.015536723163841809, 0.018361581920903956, 0.018361581920903956, 0.02401129943502825, 0.025423728813559324, 0.038135593220338986, 0.3333333333333333, 0.3333333333333333, 0.326271186440678, 0.17372881355932204, 0.04943502824858757, 0.03672316384180791, 0.025423728813559324, 0.015536723163841809, 0.015536723163841809, 0.015536723163841809, 0.015536723163841809, 0.01694915254237288, 0.018361581920903956, 0.0211864406779661, 0.022598870056497175, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.031073446327683617, 0.03389830508474576, 0.03954802259887006, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0480225988700565, 0.05084745762711865, 0.052259887005649715, 0.05367231638418079, 0.05367231638418079, 0.05790960451977401, 0.059322033898305086, 0.06638418079096045, 0.07062146892655367, 0.0748587570621469, 0.8319209039548022, 0.08192090395480225, 0.08757062146892655, 0.1016949152542373, 0.12005649717514125, 0.1370056497175141, 0.15819209039548024, 0.16807909604519775, 0.17937853107344634, 0.19350282485875706, 0.211864406779661, 0.2330508474576271, 0.2457627118644068, 0.2584745762711864, 0.2725988700564972, 0.2909604519774011, 0.2994350282485876, 0.3121468926553672, 0.3446327683615819, 0.3432203389830508, 0.327683615819209, 0.327683615819209, 0.3305084745762712, 0.3319209039548023, 0.3361581920903955, 0.3389830508474576, 0.3403954802259887, 0.3573446327683616, 0.3418079096045198, 0.3474576271186441, 0.3488700564971751, 0.3488700564971751, 0.3601694915254237, 0.4491525423728814, 0.480225988700565, 0.5692090395480226, 0.7966101694915254], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3887.gap.json b/pfam_gap_rates/DUF3887.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b360a6a3d3fdf6f0cef4f213ec4174b5965a4b93
--- /dev/null
+++ b/pfam_gap_rates/DUF3887.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3887", "n_seqs": 161, "length": 108, "gap_rates": [0.4968944099378882, 0.33540372670807456, 0.19875776397515527, 0.14906832298136646, 0.11180124223602485, 0.09316770186335403, 0.08074534161490683, 0.062111801242236024, 0.055900621118012424, 0.055900621118012424, 0.049689440993788817, 0.049689440993788817, 0.07453416149068323, 0.049689440993788817, 0.049689440993788817, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.9006211180124224, 0.037267080745341616, 0.037267080745341616, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.906832298136646, 0.906832298136646, 0.937888198757764, 0.937888198757764, 0.937888198757764, 0.937888198757764, 0.937888198757764, 0.9130434782608695, 0.906832298136646, 0.8944099378881988, 0.012422360248447204, 0.006211180124223602, 0.0, 0.006211180124223602, 0.0, 0.006211180124223602, 0.0, 0.006211180124223602, 0.018633540372670808, 0.0, 0.0, 0.07453416149068323, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012422360248447204, 0.006211180124223602, 0.006211180124223602, 0.012422360248447204, 0.043478260869565216, 0.012422360248447204, 0.012422360248447204, 0.024844720496894408, 0.037267080745341616, 0.782608695652174, 0.9006211180124224, 0.9254658385093167, 0.8012422360248447, 0.7701863354037267, 0.6770186335403726, 0.055900621118012424, 0.043478260869565216, 0.024844720496894408, 0.018633540372670808, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.937888198757764, 0.0, 0.0, 0.0, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.012422360248447204, 0.018633540372670808, 0.031055900621118012, 0.031055900621118012, 0.037267080745341616, 0.043478260869565216, 0.06832298136645963, 0.09316770186335403, 0.11801242236024845, 0.13043478260869565, 0.14906832298136646, 0.20496894409937888, 0.40993788819875776], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3971.gap.json b/pfam_gap_rates/DUF3971.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57faf81f0aed51f62f47aca5076cf629e697b0c5
--- /dev/null
+++ b/pfam_gap_rates/DUF3971.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3971", "n_seqs": 454, "length": 341, "gap_rates": [0.8083700440528634, 0.5242290748898678, 0.3986784140969163, 0.31718061674008813, 0.2533039647577093, 0.20484581497797358, 0.1828193832599119, 0.14757709251101322, 0.1343612334801762, 0.1299559471365639, 0.12555066079295155, 0.6013215859030837, 0.17400881057268722, 0.11674008810572688, 0.09691629955947137, 0.0947136563876652, 0.0881057268722467, 0.08370044052863436, 0.08149779735682819, 0.08149779735682819, 0.08149779735682819, 0.08149779735682819, 0.07709251101321586, 0.07709251101321586, 0.07709251101321586, 0.07929515418502203, 0.07929515418502203, 0.07709251101321586, 0.09251101321585903, 0.07929515418502203, 0.07929515418502203, 0.07929515418502203, 0.08149779735682819, 0.08370044052863436, 0.07709251101321586, 0.07709251101321586, 0.07709251101321586, 0.07929515418502203, 0.07709251101321586, 0.07709251101321586, 0.07709251101321586, 0.07709251101321586, 0.07709251101321586, 0.07709251101321586, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4040.gap.json b/pfam_gap_rates/DUF4040.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25a93a3cd9f24e984b36aa2751f8fc6e6cdd2fd2
--- /dev/null
+++ b/pfam_gap_rates/DUF4040.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4040", "n_seqs": 918, "length": 68, "gap_rates": [0.6427015250544662, 0.13507625272331156, 0.06535947712418301, 0.026143790849673203, 0.017429193899782137, 0.016339869281045753, 0.016339869281045753, 0.016339869281045753, 0.015250544662309368, 0.015250544662309368, 0.014161220043572984, 0.014161220043572984, 0.014161220043572984, 0.011982570806100218, 0.9139433551198257, 0.011982570806100218, 0.011982570806100218, 0.011982570806100218, 0.010893246187363835, 0.010893246187363835, 0.010893246187363835, 0.006535947712418301, 0.004357298474945534, 0.004357298474945534, 0.004357298474945534, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.002178649237472767, 0.0010893246187363835, 0.0010893246187363835, 0.0010893246187363835, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6372549019607843, 0.002178649237472767, 0.002178649237472767, 0.002178649237472767, 0.004357298474945534, 0.004357298474945534, 0.004357298474945534, 0.004357298474945534, 0.004357298474945534, 0.004357298474945534, 0.004357298474945534, 0.004357298474945534, 0.0054466230936819175, 0.008714596949891068, 0.011982570806100218, 0.029411764705882353, 0.05010893246187364, 0.11328976034858387, 0.25272331154684097, 0.6699346405228758], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF410.gap.json b/pfam_gap_rates/DUF410.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..998cfd9126342bed0a8dad33bf03e8b132ea6157
--- /dev/null
+++ b/pfam_gap_rates/DUF410.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4116.gap.json b/pfam_gap_rates/DUF4116.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d19781057ead4b2fadf146c8375c28011b6e380
--- /dev/null
+++ b/pfam_gap_rates/DUF4116.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4116", "n_seqs": 1519, "length": 49, "gap_rates": [0.2521395655036208, 0.18433179723502305, 0.14285714285714285, 0.10599078341013825, 0.09150757077024359, 0.07965766951942067, 0.07175773535220539, 0.06451612903225806, 0.055299539170506916, 0.050032916392363395, 0.042791310072416065, 0.04805793285055958, 0.03818301514154049, 0.024358130348913758, 0.026333113890717578, 0.013824884792626729, 0.009874917709019092, 0.005266622778143515, 0.007241606319947334, 0.003949967083607637, 0.024358130348913758, 0.004608294930875576, 0.0065832784726793945, 0.004608294930875576, 0.015799868334430547, 0.0, 0.0, 0.0006583278472679394, 0.0006583278472679394, 0.003949967083607637, 0.007899934167215274, 0.013166556945358789, 0.018433179723502304, 0.026991441737985518, 0.030941408821593155, 0.06188281764318631, 0.05859117840684661, 0.0684660961158657, 0.08624094799210007, 0.10599078341013825, 0.11652402896642527, 0.1369321922317314, 0.1533903884134299, 0.17314022383146807, 0.21790651744568795, 0.2672811059907834, 0.31797235023041476, 0.3574720210664911, 0.4878209348255431], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4145.gap.json b/pfam_gap_rates/DUF4145.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28cda727ae4efd448150d458467ca1aa0b14798e
--- /dev/null
+++ b/pfam_gap_rates/DUF4145.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4175.gap.json b/pfam_gap_rates/DUF4175.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c1f17bf131c6c212880f067388b78964494a486
--- /dev/null
+++ b/pfam_gap_rates/DUF4175.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4189.gap.json b/pfam_gap_rates/DUF4189.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8759bf6012d85c6918bf8b2237be86969b962b5a
--- /dev/null
+++ b/pfam_gap_rates/DUF4189.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4197.gap.json b/pfam_gap_rates/DUF4197.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a49081f3cb791a21a7a2de362fdb284758334783
--- /dev/null
+++ b/pfam_gap_rates/DUF4197.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4197", "n_seqs": 236, "length": 214, "gap_rates": [0.3093220338983051, 0.1906779661016949, 0.15254237288135594, 0.13135593220338984, 0.09745762711864407, 0.0635593220338983, 0.05508474576271186, 0.046610169491525424, 0.046610169491525424, 0.0423728813559322, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.025423728813559324, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.03389830508474576, 0.029661016949152543, 0.025423728813559324, 0.025423728813559324, 0.029661016949152543, 0.025423728813559324, 0.046610169491525424, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.0211864406779661, 0.0211864406779661, 0.0211864406779661, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.029661016949152543, 0.025423728813559324, 0.8983050847457628, 0.025423728813559324, 0.01694915254237288, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.012711864406779662, 0.012711864406779662, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.01694915254237288, 0.012711864406779662, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.0211864406779661, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.0211864406779661, 0.0211864406779661, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.029661016949152543, 0.01694915254237288, 0.0211864406779661, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.03389830508474576, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.3940677966101695, 0.038135593220338986, 0.4322033898305085, 0.05084745762711865, 0.038135593220338986, 0.9491525423728814, 0.0635593220338983, 0.09745762711864407, 0.864406779661017, 0.2245762711864407, 0.1059322033898305, 0.05084745762711865, 0.8686440677966102, 0.8813559322033898, 0.8940677966101694, 0.9194915254237288, 0.9322033898305084, 0.9491525423728814, 0.923728813559322, 0.9194915254237288, 0.8940677966101694, 0.8771186440677966, 0.8601694915254238, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.0211864406779661, 0.0211864406779661, 0.0211864406779661, 0.0211864406779661, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.029661016949152543, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.046610169491525424, 0.05084745762711865, 0.05508474576271186, 0.06779661016949153, 0.2542372881355932], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4230.gap.json b/pfam_gap_rates/DUF4230.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d8cf6d07923efa38572d705a95416d8e33dc74f
--- /dev/null
+++ b/pfam_gap_rates/DUF4230.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4230", "n_seqs": 389, "length": 184, "gap_rates": [0.6426735218508998, 0.29562982005141386, 0.16709511568123395, 0.09768637532133675, 0.061696658097686374, 0.04627249357326478, 0.043701799485861184, 0.043701799485861184, 0.03598971722365039, 0.03598971722365039, 0.03598971722365039, 0.03598971722365039, 0.03598971722365039, 0.033419023136246784, 0.033419023136246784, 0.033419023136246784, 0.03598971722365039, 0.033419023136246784, 0.030848329048843187, 0.028277634961439587, 0.02570694087403599, 0.028277634961439587, 0.028277634961439587, 0.028277634961439587, 0.028277634961439587, 0.02313624678663239, 0.5732647814910026, 0.7377892030848329, 0.922879177377892, 0.6760925449871465, 0.4601542416452442, 0.18508997429305912, 0.3033419023136247, 0.2879177377892031, 0.02570694087403599, 0.3856041131105398, 0.4910025706940874, 0.6863753213367609, 0.8611825192802056, 0.9023136246786633, 0.884318766066838, 0.8174807197943444, 0.6375321336760925, 0.4755784061696658, 0.34190231362467866, 0.02056555269922879, 0.015424164524421594, 0.015424164524421594, 0.012853470437017995, 0.010282776349614395, 0.010282776349614395, 0.010282776349614395, 0.012853470437017995, 0.012853470437017995, 0.010282776349614395, 0.010282776349614395, 0.010282776349614395, 0.010282776349614395, 0.010282776349614395, 0.010282776349614395, 0.010282776349614395, 0.010282776349614395, 0.02570694087403599, 0.012853470437017995, 0.010282776349614395, 0.010282776349614395, 0.012853470437017995, 0.010282776349614395, 0.007712082262210797, 0.007712082262210797, 0.007712082262210797, 0.002570694087403599, 0.002570694087403599, 0.010282776349614395, 0.12082262210796915, 0.13624678663239073, 0.6915167095115681, 0.7275064267352185, 0.40616966580976865, 0.007712082262210797, 0.002570694087403599, 0.002570694087403599, 0.8740359897172236, 0.002570694087403599, 0.002570694087403599, 0.002570694087403599, 0.002570694087403599, 0.015424164524421594, 0.012853470437017995, 0.010282776349614395, 0.9048843187660668, 0.8020565552699229, 0.07455012853470437, 0.0, 0.0, 0.015424164524421594, 0.0, 0.002570694087403599, 0.20308483290488433, 0.18508997429305912, 0.14910025706940874, 0.012853470437017995, 0.010282776349614395, 0.010282776349614395, 0.005141388174807198, 0.002570694087403599, 0.005141388174807198, 0.002570694087403599, 0.9408740359897172, 0.9460154241645244, 0.9254498714652957, 0.19794344473007713, 0.20565552699228792, 0.13881748071979436, 0.13624678663239073, 0.04113110539845758, 0.043701799485861184, 0.11311053984575835, 0.05141388174807198, 0.007712082262210797, 0.017994858611825194, 0.87146529562982, 0.8997429305912596, 0.9408740359897172, 0.9280205655526992, 0.884318766066838, 0.8637532133676092, 0.010282776349614395, 0.005141388174807198, 0.0, 0.0, 0.002570694087403599, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.007712082262210797, 0.007712082262210797, 0.007712082262210797, 0.007712082262210797, 0.007712082262210797, 0.007712082262210797, 0.007712082262210797, 0.007712082262210797, 0.9074550128534704, 0.9434447300771208, 0.9331619537275064, 0.8637532133676092, 0.015424164524421594, 0.007712082262210797, 0.007712082262210797, 0.8868894601542416, 0.007712082262210797, 0.007712082262210797, 0.007712082262210797, 0.010282776349614395, 0.007712082262210797, 0.007712082262210797, 0.007712082262210797, 0.010282776349614395, 0.010282776349614395, 0.015424164524421594, 0.017994858611825194, 0.02313624678663239, 0.02570694087403599, 0.028277634961439587, 0.028277634961439587, 0.030848329048843187, 0.03598971722365039, 0.8946015424164524, 0.897172236503856, 0.884318766066838, 0.07712082262210797, 0.17994858611825193, 0.2236503856041131, 0.2827763496143959, 0.3264781491002571, 0.35989717223650386, 0.9460154241645244, 0.5244215938303342, 0.570694087403599, 0.6555269922879178, 0.7557840616966581], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4235.gap.json b/pfam_gap_rates/DUF4235.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65df837be1b6c4ecb91c302e8dde2ac1acc7a09f
--- /dev/null
+++ b/pfam_gap_rates/DUF4235.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4235", "n_seqs": 156, "length": 81, "gap_rates": [0.36538461538461536, 0.1282051282051282, 0.038461538461538464, 0.03205128205128205, 0.019230769230769232, 0.019230769230769232, 0.01282051282051282, 0.00641025641025641, 0.00641025641025641, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.0, 0.0, 0.0, 0.9358974358974359, 0.9423076923076923, 0.6923076923076923, 0.00641025641025641, 0.0, 0.0, 0.8910256410256411, 0.47435897435897434, 0.00641025641025641, 0.00641025641025641, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.019230769230769232, 0.019230769230769232, 0.03205128205128205, 0.04487179487179487, 0.10256410256410256, 0.1858974358974359, 0.24358974358974358, 0.46794871794871795, 0.6410256410256411], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4255.gap.json b/pfam_gap_rates/DUF4255.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f55cd3fb4426d1477a29c163c748730083f77bb6
--- /dev/null
+++ b/pfam_gap_rates/DUF4255.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4261.gap.json b/pfam_gap_rates/DUF4261.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec50f599a516de3c055c70a9807a17e8df8555f5
--- /dev/null
+++ b/pfam_gap_rates/DUF4261.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4261", "n_seqs": 143, "length": 85, "gap_rates": [0.13286713286713286, 0.006993006993006993, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.055944055944055944, 0.9370629370629371, 0.8951048951048951, 0.006993006993006993, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006993006993006993, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6713286713286714, 0.006993006993006993, 0.0979020979020979, 0.7972027972027972, 0.7972027972027972, 0.8041958041958042, 0.7972027972027972, 0.7902097902097902, 0.027972027972027972, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.03496503496503497, 0.04195804195804196, 0.04895104895104895, 0.04895104895104895, 0.5034965034965035, 0.06993006993006994, 0.06993006993006994, 0.08391608391608392, 0.09090909090909091, 0.11888111888111888, 0.11888111888111888, 0.11188811188811189, 0.11888111888111888, 0.11888111888111888, 0.11888111888111888, 0.40559440559440557, 0.36363636363636365, 0.14685314685314685, 0.15384615384615385, 0.1888111888111888, 0.22377622377622378, 0.6853146853146853], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4283.gap.json b/pfam_gap_rates/DUF4283.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ffb70ee36c8d237fa63dc473b4ea215daeb413d
--- /dev/null
+++ b/pfam_gap_rates/DUF4283.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4283", "n_seqs": 663, "length": 146, "gap_rates": [0.9291101055806938, 0.8717948717948718, 0.8235294117647058, 0.7782805429864253, 0.7496229260935143, 0.6998491704374057, 0.6757164404223228, 0.6440422322775264, 0.6214177978883861, 0.5867269984917044, 0.5671191553544495, 0.5520361990950227, 0.5460030165912518, 0.5429864253393665, 0.5399698340874811, 0.5384615384615384, 0.7435897435897436, 0.5686274509803921, 0.5233785822021116, 0.5188536953242836, 0.5052790346907994, 0.48717948717948717, 0.48114630467571645, 0.4751131221719457, 0.47058823529411764, 0.46153846153846156, 0.4555052790346908, 0.4464555052790347, 0.4374057315233786, 0.42684766214177977, 0.39819004524886875, 0.4042232277526395, 0.39819004524886875, 0.363499245852187, 0.334841628959276, 0.32428355957767724, 0.416289592760181, 0.34087481146304677, 0.31070889894419307, 0.2956259426847662, 0.2790346907993967, 0.277526395173454, 0.27601809954751133, 0.26998491704374056, 0.2594268476621418, 0.2549019607843137, 0.24434389140271492, 0.2398190045248869, 0.23076923076923078, 0.22624434389140272, 0.22473604826546004, 0.22473604826546004, 0.22473604826546004, 0.22322775263951736, 0.21266968325791855, 0.21266968325791855, 0.21568627450980393, 0.19909502262443438, 0.19457013574660634, 0.1870286576168929, 0.18401206636500755, 0.1794871794871795, 0.1779788838612368, 0.1779788838612368, 0.17647058823529413, 0.2066365007541478, 0.17496229260935142, 0.1689291101055807, 0.16591251885369532, 0.16440422322775264, 0.16591251885369532, 0.16591251885369532, 0.16591251885369532, 0.16591251885369532, 0.9381598793363499, 0.15987933634992457, 0.15384615384615385, 0.14027149321266968, 0.13423831070889894, 0.12368024132730016, 0.12368024132730016, 0.12669683257918551, 0.13423831070889894, 0.13725490196078433, 0.13574660633484162, 0.13574660633484162, 0.21417797888386123, 0.2096530920060332, 0.19457013574660634, 0.17194570135746606, 0.37104072398190047, 0.31825037707390647, 0.31975867269984914, 0.2986425339366516, 0.28808446455505277, 0.15082956259426847, 0.15384615384615385, 0.14177978883861236, 0.12669683257918551, 0.12518853695324283, 0.12518853695324283, 0.1282051282051282, 0.1282051282051282, 0.1282051282051282, 0.1297134238310709, 0.12669683257918551, 0.13122171945701358, 0.13122171945701358, 0.13574660633484162, 0.14479638009049775, 0.14328808446455504, 0.1478129713423831, 0.15233785822021115, 0.15233785822021115, 0.15535444947209653, 0.16138763197586728, 0.16440422322775264, 0.16440422322775264, 0.16138763197586728, 0.167420814479638, 0.17194570135746606, 0.17345399698340874, 0.17647058823529413, 0.18099547511312217, 0.19004524886877827, 0.19155354449472098, 0.19607843137254902, 0.20060331825037708, 0.2066365007541478, 0.21417797888386123, 0.22473604826546004, 0.23529411764705882, 0.2398190045248869, 0.2564102564102564, 0.29260935143288086, 0.2986425339366516, 0.30015082956259426, 0.31070889894419307, 0.3257918552036199, 0.3288084464555053, 0.3378582202111614, 0.3469079939668175, 0.34841628959276016, 0.358974358974359, 0.39064856711915535, 0.4464555052790347], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4292.gap.json b/pfam_gap_rates/DUF4292.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e3fde70669ba58cfc2ec99ee4406e1c81dbafa2
--- /dev/null
+++ b/pfam_gap_rates/DUF4292.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4292", "n_seqs": 193, "length": 245, "gap_rates": [0.6528497409326425, 0.44041450777202074, 0.36787564766839376, 0.31088082901554404, 0.27979274611398963, 0.24870466321243523, 0.21761658031088082, 0.20725388601036268, 0.17616580310880828, 0.16580310880829016, 0.16062176165803108, 0.16062176165803108, 0.16062176165803108, 0.15544041450777202, 0.15544041450777202, 0.35751295336787564, 0.927461139896373, 0.26424870466321243, 0.16062176165803108, 0.14507772020725387, 0.13989637305699482, 0.29015544041450775, 0.43005181347150256, 0.12435233160621761, 0.12435233160621761, 0.11917098445595854, 0.11917098445595854, 0.11917098445595854, 0.11917098445595854, 0.11398963730569948, 0.11398963730569948, 0.11398963730569948, 0.11398963730569948, 0.11398963730569948, 0.10880829015544041, 0.09844559585492228, 0.09844559585492228, 0.09844559585492228, 0.09844559585492228, 0.09844559585492228, 0.09326424870466321, 0.844559585492228, 0.38341968911917096, 0.15544041450777202, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4327.gap.json b/pfam_gap_rates/DUF4327.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..364f27920c5f90c86b4a01b17ed34f6060e67ec8
--- /dev/null
+++ b/pfam_gap_rates/DUF4327.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4327", "n_seqs": 120, "length": 67, "gap_rates": [0.058333333333333334, 0.041666666666666664, 0.016666666666666666, 0.016666666666666666, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.35, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008333333333333333, 0.016666666666666666, 0.016666666666666666, 0.025, 0.025, 0.03333333333333333, 0.1], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF433.gap.json b/pfam_gap_rates/DUF433.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92441134fe00a6168318e45cdd50b079f96d7739
--- /dev/null
+++ b/pfam_gap_rates/DUF433.gap.json
@@ -0,0 +1 @@
+{"family": "DUF433", "n_seqs": 950, "length": 57, "gap_rates": [0.29578947368421055, 0.24947368421052632, 0.21263157894736842, 0.2031578947368421, 0.20105263157894737, 0.19789473684210526, 0.1957894736842105, 0.17894736842105263, 0.1631578947368421, 0.14105263157894737, 0.13157894736842105, 0.1168421052631579, 0.04631578947368421, 0.03894736842105263, 0.035789473684210524, 0.034736842105263156, 0.030526315789473683, 0.02736842105263158, 0.024210526315789474, 0.022105263157894735, 0.018947368421052633, 0.014736842105263158, 0.014736842105263158, 0.014736842105263158, 0.9263157894736842, 0.01368421052631579, 0.01368421052631579, 0.011578947368421053, 0.01368421052631579, 0.014736842105263158, 0.014736842105263158, 0.017894736842105262, 0.010526315789473684, 0.009473684210526316, 0.010526315789473684, 0.010526315789473684, 0.011578947368421053, 0.01263157894736842, 0.01368421052631579, 0.01368421052631579, 0.01368421052631579, 0.015789473684210527, 0.15894736842105264, 0.017894736842105262, 0.017894736842105262, 0.018947368421052633, 0.02, 0.02526315789473684, 0.028421052631578948, 0.029473684210526315, 0.034736842105263156, 0.04105263157894737, 0.05052631578947368, 0.061052631578947365, 0.10210526315789474, 0.14526315789473684, 0.2894736842105263], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4330.gap.json b/pfam_gap_rates/DUF4330.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c48b911c65d559b10454d71989c3b389f557229e
--- /dev/null
+++ b/pfam_gap_rates/DUF4330.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4330", "n_seqs": 128, "length": 184, "gap_rates": [0.40625, 0.3671875, 0.3515625, 0.34375, 0.3125, 0.2890625, 0.2734375, 0.2578125, 0.25, 0.25, 0.234375, 0.1953125, 0.140625, 0.1171875, 0.09375, 0.078125, 0.078125, 0.078125, 0.078125, 0.0703125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0546875, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.046875, 0.046875, 0.046875, 0.7734375, 0.3671875, 0.34375, 0.328125, 0.90625, 0.15625, 0.109375, 0.109375, 0.21875, 0.328125, 0.71875, 0.2890625, 0.140625, 0.0703125, 0.078125, 0.109375, 0.1015625, 0.0390625, 0.03125, 0.03125, 0.0234375, 0.0234375, 0.0234375, 0.0390625, 0.0390625, 0.0234375, 0.0234375, 0.5859375, 0.5234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.2890625, 0.1875, 0.8984375, 0.8515625, 0.171875, 0.0234375, 0.0234375, 0.0234375, 0.03125, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.1484375, 0.1484375, 0.4453125, 0.453125, 0.375, 0.09375, 0.078125, 0.03125, 0.8515625, 0.9140625, 0.765625, 0.0234375, 0.0234375, 0.015625, 0.015625, 0.0078125, 0.015625, 0.015625, 0.015625, 0.015625, 0.0234375, 0.0234375, 0.015625, 0.03125, 0.1015625, 0.9453125, 0.1015625, 0.0390625, 0.0390625, 0.0234375, 0.03125, 0.046875, 0.046875, 0.0390625, 0.0390625, 0.0390625, 0.046875, 0.046875, 0.6015625, 0.7109375, 0.53125, 0.4921875, 0.515625, 0.09375, 0.078125, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.0234375, 0.0234375, 0.0234375, 0.9296875, 0.03125, 0.03125, 0.0234375, 0.015625, 0.0234375, 0.9296875, 0.03125, 0.046875, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.0390625, 0.0390625, 0.0390625, 0.046875, 0.046875, 0.0546875, 0.046875, 0.046875, 0.046875, 0.046875, 0.0546875, 0.0625, 0.0625, 0.0703125, 0.078125, 0.1484375, 0.1796875, 0.5546875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4336.gap.json b/pfam_gap_rates/DUF4336.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24559bd63b2a5d35da877794f74fc685ffc98d38
--- /dev/null
+++ b/pfam_gap_rates/DUF4336.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4336", "n_seqs": 351, "length": 346, "gap_rates": [0.7521367521367521, 0.6410256410256411, 0.5783475783475783, 0.5299145299145299, 0.5213675213675214, 0.5156695156695157, 0.5156695156695157, 0.5128205128205128, 0.50997150997151, 0.5014245014245015, 0.4928774928774929, 0.4843304843304843, 0.4672364672364672, 0.8888888888888888, 0.8689458689458689, 0.43304843304843305, 0.39886039886039887, 0.35327635327635326, 0.32763532763532766, 0.28774928774928776, 0.28205128205128205, 0.2678062678062678, 0.16524216524216523, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.1452991452991453, 0.1452991452991453, 0.1452991452991453, 0.9487179487179487, 0.16524216524216523, 0.14245014245014245, 0.14245014245014245, 0.14245014245014245, 0.14245014245014245, 0.14245014245014245, 0.14245014245014245, 0.14245014245014245, 0.14245014245014245, 0.14245014245014245, 0.14245014245014245, 0.14814814814814814, 0.14814814814814814, 0.150997150997151, 0.150997150997151, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4351.gap.json b/pfam_gap_rates/DUF4351.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..94fdae3234f5bd6460b1dab0229d470b081b2eb9
--- /dev/null
+++ b/pfam_gap_rates/DUF4351.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4351", "n_seqs": 489, "length": 62, "gap_rates": [0.4723926380368098, 0.17995910020449898, 0.09406952965235174, 0.07566462167689161, 0.06134969325153374, 0.03680981595092025, 0.9243353783231084, 0.9243353783231084, 0.9243353783231084, 0.032719836400818, 0.032719836400818, 0.03067484662576687, 0.03067484662576687, 0.028629856850715747, 0.026584867075664622, 0.02044989775051125, 0.02044989775051125, 0.018404907975460124, 0.018404907975460124, 0.014314928425357873, 0.014314928425357873, 0.014314928425357873, 0.014314928425357873, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.010224948875255624, 0.010224948875255624, 0.0081799591002045, 0.016359918200409, 0.00408997955010225, 0.00408997955010225, 0.00408997955010225, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.002044989775051125, 0.00408997955010225, 0.00408997955010225, 0.006134969325153374, 0.0081799591002045, 0.0081799591002045, 0.012269938650306749, 0.014314928425357873, 0.016359918200409, 0.016359918200409, 0.02044989775051125, 0.022494887525562373, 0.022494887525562373, 0.022494887525562373, 0.022494887525562373, 0.032719836400818, 0.03885480572597137, 0.06134969325153374, 0.10633946830265849, 0.1656441717791411, 0.2965235173824131, 0.3128834355828221, 0.32515337423312884, 0.4110429447852761], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4383.gap.json b/pfam_gap_rates/DUF4383.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..173793def938fe85677c19e64017ad0d5e455165
--- /dev/null
+++ b/pfam_gap_rates/DUF4383.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4383", "n_seqs": 175, "length": 138, "gap_rates": [0.2342857142857143, 0.16, 0.09714285714285714, 0.06857142857142857, 0.05142857142857143, 0.045714285714285714, 0.02857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.5085714285714286, 0.5142857142857142, 0.49142857142857144, 0.45714285714285713, 0.48, 0.9085714285714286, 0.9142857142857143, 0.9371428571428572, 0.9428571428571428, 0.9371428571428572, 0.9257142857142857, 0.9142857142857143, 0.8971428571428571, 0.5828571428571429, 0.37142857142857144, 0.32571428571428573, 0.22857142857142856, 0.2057142857142857, 0.19428571428571428, 0.14285714285714285, 0.14857142857142858, 0.14285714285714285, 0.12, 0.09142857142857143, 0.07428571428571429, 0.022857142857142857, 0.022857142857142857, 0.011428571428571429, 0.022857142857142857, 0.022857142857142857, 0.02857142857142857, 0.24571428571428572, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.005714285714285714, 0.6057142857142858, 0.005714285714285714, 0.017142857142857144, 0.011428571428571429, 0.022857142857142857, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.08, 0.045714285714285714, 0.04, 0.04, 0.84, 0.9142857142857143, 0.9257142857142857, 0.9028571428571428, 0.4114285714285714, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.045714285714285714, 0.05714285714285714, 0.07428571428571429, 0.12571428571428572, 0.8628571428571429], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4389.gap.json b/pfam_gap_rates/DUF4389.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3488b6359476142559e92197c74dbc4de3ef46bf
--- /dev/null
+++ b/pfam_gap_rates/DUF4389.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4389", "n_seqs": 211, "length": 79, "gap_rates": [0.8625592417061612, 0.6208530805687204, 0.4786729857819905, 0.4218009478672986, 0.2796208530805687, 0.23696682464454977, 0.22274881516587677, 0.2132701421800948, 0.20853080568720378, 0.1895734597156398, 0.18009478672985782, 0.17535545023696683, 0.17535545023696683, 0.17535545023696683, 0.17535545023696683, 0.17061611374407584, 0.17061611374407584, 0.17061611374407584, 0.15165876777251186, 0.15165876777251186, 0.13270142180094788, 0.11848341232227488, 0.0995260663507109, 0.014218009478672985, 0.004739336492890996, 0.004739336492890996, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004739336492890996, 0.0, 0.9383886255924171, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8957345971563981, 0.8957345971563981, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004739336492890996, 0.0, 0.0, 0.0, 0.0, 0.004739336492890996, 0.023696682464454975, 0.052132701421800945, 0.5687203791469194, 0.7061611374407583], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4391.gap.json b/pfam_gap_rates/DUF4391.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..496f0092704cbe4830e97500a9668ed47b42f8b1
--- /dev/null
+++ b/pfam_gap_rates/DUF4391.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4408.gap.json b/pfam_gap_rates/DUF4408.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d61d0bd5c860718a355a72762408a7478b960bf8
--- /dev/null
+++ b/pfam_gap_rates/DUF4408.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4408", "n_seqs": 166, "length": 45, "gap_rates": [0.5, 0.42168674698795183, 0.3192771084337349, 0.3072289156626506, 0.2469879518072289, 0.19879518072289157, 0.13855421686746988, 0.12048192771084337, 0.07228915662650602, 0.8493975903614458, 0.8614457831325302, 0.8674698795180723, 0.8734939759036144, 0.8734939759036144, 0.8795180722891566, 0.8734939759036144, 0.8734939759036144, 0.8674698795180723, 0.8614457831325302, 0.8493975903614458, 0.8433734939759037, 0.030120481927710843, 0.024096385542168676, 0.006024096385542169, 0.006024096385542169, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006024096385542169, 0.024096385542168676, 0.19879518072289157, 0.4036144578313253], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF441.gap.json b/pfam_gap_rates/DUF441.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc1291eafafcf6ea7b2e995be1eb154a7ff43596
--- /dev/null
+++ b/pfam_gap_rates/DUF441.gap.json
@@ -0,0 +1 @@
+{"family": "DUF441", "n_seqs": 209, "length": 141, "gap_rates": [0.20095693779904306, 0.09090909090909091, 0.04784688995215311, 0.04784688995215311, 0.04784688995215311, 0.03827751196172249, 0.03827751196172249, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.9090909090909091, 0.023923444976076555, 0.023923444976076555, 0.019138755980861243, 0.019138755980861243, 0.5980861244019139, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.014354066985645933, 0.014354066985645933, 0.009569377990430622, 0.009569377990430622, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.019138755980861243, 0.019138755980861243, 0.014354066985645933, 0.014354066985645933, 0.019138755980861243, 0.014354066985645933, 0.0430622009569378, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.023923444976076555, 0.03827751196172249, 0.23923444976076555], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4433.gap.json b/pfam_gap_rates/DUF4433.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf2a8830783ccd8b734c27838b2eeade44838b99
--- /dev/null
+++ b/pfam_gap_rates/DUF4433.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4433", "n_seqs": 138, "length": 242, "gap_rates": [0.21014492753623187, 0.12318840579710146, 0.12318840579710146, 0.11594202898550725, 0.11594202898550725, 0.11594202898550725, 0.11594202898550725, 0.11594202898550725, 0.11594202898550725, 0.11594202898550725, 0.11594202898550725, 0.11594202898550725, 0.10869565217391304, 0.10144927536231885, 0.10144927536231885, 0.10144927536231885, 0.36231884057971014, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10144927536231885, 0.10144927536231885, 0.13043478260869565, 0.13768115942028986, 0.2971014492753623, 0.9420289855072463, 0.4057971014492754, 0.2536231884057971, 0.16666666666666666, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10144927536231885, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.13768115942028986, 0.13043478260869565, 0.12318840579710146, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4435.gap.json b/pfam_gap_rates/DUF4435.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80d04ee79cb283ab0eb264d7b413889c0a0a6ddc
--- /dev/null
+++ b/pfam_gap_rates/DUF4435.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4441.gap.json b/pfam_gap_rates/DUF4441.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ff85511bf4b7801860a68b16465afded7a6ecfe
--- /dev/null
+++ b/pfam_gap_rates/DUF4441.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4448.gap.json b/pfam_gap_rates/DUF4448.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68dd7161e02e75a2be36bcaed0232858f5d9ef84
--- /dev/null
+++ b/pfam_gap_rates/DUF4448.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4462.gap.json b/pfam_gap_rates/DUF4462.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e54a17f67e73adb7d5395fe93d2fbde2dd5d1e70
--- /dev/null
+++ b/pfam_gap_rates/DUF4462.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4462", "n_seqs": 149, "length": 28, "gap_rates": [0.3288590604026846, 0.2214765100671141, 0.18791946308724833, 0.14093959731543623, 0.087248322147651, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006711409395973154, 0.006711409395973154, 0.040268456375838924, 0.14093959731543623, 0.15436241610738255, 0.1610738255033557, 0.22818791946308725], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4470.gap.json b/pfam_gap_rates/DUF4470.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32430547aa69114984927d7b6896d2e8f644ea81
--- /dev/null
+++ b/pfam_gap_rates/DUF4470.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4470", "n_seqs": 372, "length": 130, "gap_rates": [0.42473118279569894, 0.25, 0.22043010752688172, 0.20967741935483872, 0.19623655913978494, 0.19086021505376344, 0.1881720430107527, 0.1827956989247312, 0.1774193548387097, 0.17204301075268819, 0.1693548387096774, 0.16666666666666666, 0.1532258064516129, 0.5564516129032258, 0.6263440860215054, 0.7795698924731183, 0.8306451612903226, 0.8870967741935484, 0.8978494623655914, 0.9327956989247311, 0.946236559139785, 0.946236559139785, 0.9408602150537635, 0.9193548387096774, 0.8924731182795699, 0.8790322580645161, 0.8118279569892473, 0.6935483870967742, 0.5940860215053764, 0.5053763440860215, 0.20161290322580644, 0.2849462365591398, 0.22849462365591397, 0.1935483870967742, 0.05913978494623656, 0.7768817204301075, 0.8360215053763441, 0.8844086021505376, 0.9220430107526881, 0.8548387096774194, 0.793010752688172, 0.7741935483870968, 0.04838709677419355, 0.051075268817204304, 0.0456989247311828, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.03494623655913978, 0.03494623655913978, 0.03225806451612903, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.024193548387096774, 0.6639784946236559, 0.7688172043010753, 0.8118279569892473, 0.8763440860215054, 0.9381720430107527, 0.8897849462365591, 0.8521505376344086, 0.7956989247311828, 0.7123655913978495, 0.6317204301075269, 0.12096774193548387, 0.17204301075268819, 0.13709677419354838, 0.0456989247311828, 0.03494623655913978, 0.03763440860215054, 0.02956989247311828, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.013440860215053764, 0.013440860215053764, 0.013440860215053764, 0.013440860215053764, 0.013440860215053764, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.013440860215053764, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.013440860215053764, 0.013440860215053764, 0.013440860215053764, 0.021505376344086023, 0.1989247311827957, 0.23118279569892472, 0.9354838709677419, 0.22580645161290322, 0.34408602150537637, 0.5591397849462365, 0.5376344086021505, 0.4838709677419355, 0.16666666666666666, 0.13978494623655913, 0.12903225806451613, 0.13172043010752688, 0.13440860215053763, 0.1424731182795699, 0.15053763440860216, 0.1532258064516129, 0.15591397849462366, 0.1639784946236559, 0.17204301075268819, 0.1827956989247312, 0.21236559139784947, 0.23118279569892472, 0.25, 0.3924731182795699], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF454.gap.json b/pfam_gap_rates/DUF454.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ec1386ffd6a6658f49025ea7491a8bfb9087d2a
--- /dev/null
+++ b/pfam_gap_rates/DUF454.gap.json
@@ -0,0 +1 @@
+{"family": "DUF454", "n_seqs": 546, "length": 118, "gap_rates": [0.24175824175824176, 0.12454212454212454, 0.0695970695970696, 0.056776556776556776, 0.04945054945054945, 0.04212454212454213, 0.03296703296703297, 0.031135531135531136, 0.02564102564102564, 0.023809523809523808, 0.02197802197802198, 0.020146520146520148, 0.018315018315018316, 0.014652014652014652, 0.014652014652014652, 0.01282051282051282, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.009157509157509158, 0.009157509157509158, 0.009157509157509158, 0.009157509157509158, 0.007326007326007326, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.003663003663003663, 0.009157509157509158, 0.005494505494505495, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.009157509157509158, 0.009157509157509158, 0.007326007326007326, 0.01098901098901099, 0.01282051282051282, 0.014652014652014652, 0.01282051282051282, 0.014652014652014652, 0.020146520146520148, 0.02197802197802198, 0.023809523809523808, 0.04395604395604396, 0.027472527472527472, 0.031135531135531136, 0.031135531135531136, 0.031135531135531136, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.0347985347985348, 0.03663003663003663, 0.03663003663003663, 0.03663003663003663, 0.03663003663003663, 0.03663003663003663, 0.03663003663003663, 0.7545787545787546, 0.045787545787545784, 0.045787545787545784, 0.045787545787545784, 0.847985347985348, 0.038461538461538464, 0.040293040293040296, 0.04212454212454213, 0.04395604395604396, 0.04212454212454213, 0.047619047619047616, 0.04212454212454213, 0.04395604395604396, 0.04395604395604396, 0.04395604395604396, 0.04395604395604396, 0.04395604395604396, 0.045787545787545784, 0.04395604395604396, 0.045787545787545784, 0.045787545787545784, 0.047619047619047616, 0.054945054945054944, 0.7564102564102564, 0.06227106227106227, 0.08608058608058608, 0.12454212454212454, 0.2032967032967033, 0.5970695970695971], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4598.gap.json b/pfam_gap_rates/DUF4598.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd327e4ba64d1e9ceba58f7ac4b72267bdaab26f
--- /dev/null
+++ b/pfam_gap_rates/DUF4598.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4598", "n_seqs": 156, "length": 188, "gap_rates": [0.4230769230769231, 0.11538461538461539, 0.08333333333333333, 0.0641025641025641, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.019230769230769232, 0.019230769230769232, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.01282051282051282, 0.0641025641025641, 0.1987179487179487, 0.33974358974358976, 0.22435897435897437, 0.20512820512820512, 0.02564102564102564, 0.0, 0.0, 0.0, 0.0, 0.9358974358974359, 0.9294871794871795, 0.00641025641025641, 0.03205128205128205, 0.02564102564102564, 0.019230769230769232, 0.019230769230769232, 0.00641025641025641, 0.9166666666666666, 0.9230769230769231, 0.9358974358974359, 0.9358974358974359, 0.9423076923076923, 0.9487179487179487, 0.9487179487179487, 0.9487179487179487, 0.9423076923076923, 0.9358974358974359, 0.9358974358974359, 0.9230769230769231, 0.9166666666666666, 0.9102564102564102, 0.01282051282051282, 0.08974358974358974, 0.19230769230769232, 0.8141025641025641, 0.8461538461538461, 0.9038461538461539, 0.9038461538461539, 0.9230769230769231, 0.9423076923076923, 0.9487179487179487, 0.9423076923076923, 0.9166666666666666, 0.9038461538461539, 0.8653846153846154, 0.8397435897435898, 0.7371794871794872, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.0, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.07051282051282051, 0.09615384615384616, 0.02564102564102564, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.03205128205128205, 0.05128205128205128, 0.5384615384615384, 0.5448717948717948, 0.5769230769230769, 0.5833333333333334, 0.6346153846153846, 0.6410256410256411, 0.6538461538461539, 0.6666666666666666, 0.6794871794871795, 0.7628205128205128, 0.8141025641025641, 0.8717948717948718, 0.8974358974358975, 0.9166666666666666, 0.9423076923076923, 0.9423076923076923, 0.9230769230769231, 0.9102564102564102, 0.8910256410256411, 0.8461538461538461, 0.7948717948717948, 0.7435897435897436, 0.6794871794871795, 0.6602564102564102, 0.6538461538461539, 0.6346153846153846, 0.6089743589743589, 0.5833333333333334, 0.5512820512820513, 0.5384615384615384, 0.5128205128205128, 0.1858974358974359, 0.3076923076923077, 0.23076923076923078, 0.1987179487179487, 0.1987179487179487, 0.17307692307692307, 0.14743589743589744, 0.1346153846153846, 0.1282051282051282, 0.11538461538461539, 0.1346153846153846, 0.14743589743589744, 0.14743589743589744, 0.15384615384615385, 0.17307692307692307, 0.19230769230769232, 0.20512820512820512, 0.23717948717948717, 0.3717948717948718, 0.38461538461538464, 0.38461538461538464, 0.4230769230769231, 0.4551282051282051, 0.47435897435897434, 0.47435897435897434, 0.4230769230769231, 0.8205128205128205, 0.8461538461538461, 0.8974358974358975, 0.9166666666666666, 0.9230769230769231, 0.9358974358974359, 0.9358974358974359, 0.9423076923076923, 0.9358974358974359, 0.9230769230769231, 0.9230769230769231, 0.9166666666666666, 0.8589743589743589, 0.8397435897435898, 0.7884615384615384, 0.4166666666666667, 0.4358974358974359, 0.44871794871794873, 0.46153846153846156, 0.47435897435897434, 0.5064102564102564, 0.5064102564102564, 0.5064102564102564, 0.5256410256410257, 0.5512820512820513, 0.5576923076923077, 0.5641025641025641, 0.5769230769230769, 0.5769230769230769, 0.5833333333333334, 0.5961538461538461, 0.6282051282051282, 0.9487179487179487, 0.9294871794871795, 0.8076923076923077, 0.6474358974358975, 0.6410256410256411, 0.6474358974358975, 0.6474358974358975, 0.6858974358974359, 0.7115384615384616, 0.75], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4604.gap.json b/pfam_gap_rates/DUF4604.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d1100ab36d6086bbc568b4ba6afc56d0f2a1ba3
--- /dev/null
+++ b/pfam_gap_rates/DUF4604.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4782.gap.json b/pfam_gap_rates/DUF4782.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..301ade1ebbe2147c67e1c46718b690a508f7004b
--- /dev/null
+++ b/pfam_gap_rates/DUF4782.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4782", "n_seqs": 871, "length": 175, "gap_rates": [0.4535017221584386, 0.2835820895522388, 0.22502870264064295, 0.1859931113662457, 0.1549942594718714, 0.13203214695752008, 0.12055109070034443, 0.09758897818599312, 0.08725602755453502, 0.07807118254879448, 0.07462686567164178, 0.06544202066590127, 0.06199770378874857, 0.06199770378874857, 0.06199770378874857, 0.060849598163030996, 0.05970149253731343, 0.12629161882893225, 0.912743972445465, 0.2365097588978186, 0.33295063145809417, 0.06659012629161883, 0.05625717566016074, 0.0539609644087256, 0.05510907003444317, 0.9402985074626866, 0.04822043628013777, 0.04707233065442021, 0.04477611940298507, 0.04247990815154994, 0.04477611940298507, 0.04133180252583238, 0.04133180252583238, 0.05855338691159587, 0.7864523536165328, 0.04707233065442021, 0.04477611940298507, 0.04133180252583238, 0.03788748564867968, 0.03673938002296211, 0.05510907003444317, 0.060849598163030996, 0.04362801377726751, 0.03673938002296211, 0.040183696900114814, 0.0574052812858783, 0.13203214695752008, 0.0539609644087256, 0.06659012629161883, 0.1584385763490241, 0.8507462686567164, 0.8920780711825488, 0.9173363949483353, 0.9322617680826636, 0.9425947187141217, 0.9230769230769231, 0.9081515499425947, 0.8714121699196326, 0.7405281285878301, 0.34902411021814006, 0.0574052812858783, 0.04936854190585534, 0.04247990815154994, 0.030998851894374284, 0.027554535017221583, 0.027554535017221583, 0.02640642939150402, 0.02640642939150402, 0.027554535017221583, 0.02870264064293915, 0.027554535017221583, 0.02525832376578645, 0.02525832376578645, 0.02640642939150402, 0.03673938002296211, 0.03214695752009185, 0.7795637198622273, 0.03444316877152698, 0.23765786452353616, 0.912743972445465, 0.2801377726750861, 0.04707233065442021, 0.04133180252583238, 0.04133180252583238, 0.03559127439724455, 0.03329506314580941, 0.029850746268656716, 0.029850746268656716, 0.03788748564867968, 0.02870264064293915, 0.02640642939150402, 0.3605051664753157, 0.2709529276693456, 0.06199770378874857, 0.03903559127439724, 0.030998851894374284, 0.04822043628013777, 0.060849598163030996, 0.09070034443168772, 0.8541905855338691, 0.30884041331802525, 0.5430539609644087, 0.513203214695752, 0.39380022962112515, 0.35706084959816303, 0.029850746268656716, 0.024110218140068886, 0.022962112514351322, 0.02525832376578645, 0.024110218140068886, 0.022962112514351322, 0.027554535017221583, 0.024110218140068886, 0.5935706084959816, 0.027554535017221583, 0.02066590126291619, 0.024110218140068886, 0.021814006888633754, 0.021814006888633754, 0.02066590126291619, 0.02066590126291619, 0.02066590126291619, 0.021814006888633754, 0.022962112514351322, 0.02525832376578645, 0.02525832376578645, 0.02870264064293915, 0.030998851894374284, 0.03214695752009185, 0.03329506314580941, 0.03444316877152698, 0.03559127439724455, 0.05625717566016074, 0.0574052812858783, 0.9070034443168772, 0.20436280137772675, 0.8966704936854191, 0.2606199770378875, 0.30424799081515497, 0.9207807118254879, 0.8381171067738232, 0.6119402985074627, 0.539609644087256, 0.2020665901262916, 0.2399540757749713, 0.04936854190585534, 0.045924225028702644, 0.045924225028702644, 0.04477611940298507, 0.045924225028702644, 0.04822043628013777, 0.04936854190585534, 0.0539609644087256, 0.06314580941446613, 0.06314580941446613, 0.06544202066590127, 0.06659012629161883, 0.9024110218140069, 0.1182548794489093, 0.12973593570608496, 0.08266360505166476, 0.8105625717566016, 0.7749712973593571, 0.08381171067738231, 0.08610792192881746, 0.09988518943742825, 0.10562571756601608, 0.11021814006888633, 0.1113662456946039, 0.1148105625717566, 0.1285878300803674, 0.1423650975889782, 0.1894374282433984, 0.31802525832376577, 0.5269804822043628], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF484.gap.json b/pfam_gap_rates/DUF484.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd0fcea9690f3cf95f365dc121d770360e4eda9a
--- /dev/null
+++ b/pfam_gap_rates/DUF484.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF493.gap.json b/pfam_gap_rates/DUF493.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c7ef768702b1b00214c703d53076a50cf50c2c2
--- /dev/null
+++ b/pfam_gap_rates/DUF493.gap.json
@@ -0,0 +1 @@
+{"family": "DUF493", "n_seqs": 491, "length": 88, "gap_rates": [0.9063136456211812, 0.35030549898167007, 0.18533604887983707, 0.0814663951120163, 0.04684317718940937, 0.018329938900203666, 0.018329938900203666, 0.016293279022403257, 0.9490835030549898, 0.016293279022403257, 0.016293279022403257, 0.016293279022403257, 0.016293279022403257, 0.016293279022403257, 0.016293279022403257, 0.012219959266802444, 0.012219959266802444, 0.012219959266802444, 0.014256619144602852, 0.026476578411405296, 0.032586558044806514, 0.03665987780040733, 0.038696537678207736, 0.026476578411405296, 0.012219959266802444, 0.014256619144602852, 0.010183299389002037, 0.010183299389002037, 0.010183299389002037, 0.008146639511201629, 0.008146639511201629, 0.008146639511201629, 0.012219959266802444, 0.010183299389002037, 0.012219959266802444, 0.18329938900203666, 0.824847250509165, 0.1690427698574338, 0.1425661914460285, 0.1975560081466395, 0.19144602851323828, 0.12627291242362526, 0.11608961303462322, 0.9144602851323829, 0.21181262729124237, 0.20162932790224034, 0.17718940936863545, 0.016293279022403257, 0.006109979633401222, 0.008146639511201629, 0.006109979633401222, 0.006109979633401222, 0.006109979633401222, 0.006109979633401222, 0.006109979633401222, 0.006109979633401222, 0.006109979633401222, 0.004073319755600814, 0.004073319755600814, 0.004073319755600814, 0.9226069246435845, 0.004073319755600814, 0.004073319755600814, 0.004073319755600814, 0.004073319755600814, 0.004073319755600814, 0.004073319755600814, 0.004073319755600814, 0.004073319755600814, 0.004073319755600814, 0.006109979633401222, 0.008146639511201629, 0.010183299389002037, 0.010183299389002037, 0.010183299389002037, 0.010183299389002037, 0.012219959266802444, 0.020366598778004074, 0.024439918533604887, 0.026476578411405296, 0.04276985743380855, 0.04684317718940937, 0.05702647657841141, 0.06517311608961303, 0.1120162932790224, 0.1446028513238289, 0.20570264765784113, 0.3034623217922607], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4939.gap.json b/pfam_gap_rates/DUF4939.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7cc5ff11b50509c8ea1dc5ca304fde54577b3e4
--- /dev/null
+++ b/pfam_gap_rates/DUF4939.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4939", "n_seqs": 210, "length": 113, "gap_rates": [0.780952380952381, 0.7523809523809524, 0.719047619047619, 0.719047619047619, 0.7142857142857143, 0.7047619047619048, 0.6857142857142857, 0.6857142857142857, 0.680952380952381, 0.6761904761904762, 0.6761904761904762, 0.6666666666666666, 0.6428571428571429, 0.6190476190476191, 0.5952380952380952, 0.5523809523809524, 0.5523809523809524, 0.5523809523809524, 0.5476190476190477, 0.4857142857142857, 0.44761904761904764, 0.43333333333333335, 0.3952380952380952, 0.3047619047619048, 0.2761904761904762, 0.23809523809523808, 0.1619047619047619, 0.14761904761904762, 0.14761904761904762, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.01904761904761905, 0.014285714285714285, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7047619047619048, 0.0, 0.0, 0.014285714285714285, 0.01904761904761905, 0.01904761904761905, 0.0380952380952381, 0.06190476190476191, 0.09523809523809523, 0.1, 0.10476190476190476, 0.11904761904761904, 0.14285714285714285, 0.18095238095238095, 0.7714285714285715, 0.7857142857142857, 0.7714285714285715, 0.19047619047619047, 0.19523809523809524, 0.19523809523809524, 0.20476190476190476, 0.20476190476190476, 0.20952380952380953, 0.21428571428571427, 0.21904761904761905, 0.22380952380952382, 0.22380952380952382, 0.22380952380952382, 0.22380952380952382, 0.22380952380952382, 0.22857142857142856, 0.22857142857142856, 0.24285714285714285, 0.28095238095238095, 0.5476190476190477, 0.6095238095238096, 0.6904761904761905, 0.7047619047619048, 0.7380952380952381, 0.9047619047619048, 0.9095238095238095], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4954.gap.json b/pfam_gap_rates/DUF4954.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb73aa6c992a22f3c66fb4d8a7a0b75847c490f1
--- /dev/null
+++ b/pfam_gap_rates/DUF4954.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5011.gap.json b/pfam_gap_rates/DUF5011.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c8db55b49a28b84c6019c421e34132064998d75
--- /dev/null
+++ b/pfam_gap_rates/DUF5011.gap.json
@@ -0,0 +1 @@
+{"family": "DUF5011", "n_seqs": 897, "length": 76, "gap_rates": [0.6098104793756968, 0.4793756967670011, 0.39464882943143814, 0.36789297658862874, 0.3534002229654404, 0.3232998885172798, 0.21516164994425863, 0.16387959866220736, 0.14046822742474915, 0.10479375696767002, 0.09141583054626533, 0.08918617614269789, 0.08918617614269789, 0.08695652173913043, 0.08138238573021182, 0.07803790412486064, 0.07803790412486064, 0.07692307692307693, 0.0802675585284281, 0.7090301003344481, 0.05239687848383501, 0.04124860646599777, 0.026755852842809364, 0.024526198439241916, 0.020066889632107024, 0.020066889632107024, 0.020066889632107024, 0.023411371237458192, 0.2028985507246377, 0.044593088071348944, 0.0379041248606466, 0.03678929765886288, 0.03121516164994426, 0.046822742474916385, 0.9464882943143813, 0.06577480490523968, 0.03678929765886288, 0.013377926421404682, 0.012263099219620958, 0.0189520624303233, 0.011148272017837236, 0.013377926421404682, 0.7068004459308808, 0.010033444816053512, 0.012263099219620958, 0.011148272017837236, 0.021181716833890748, 0.012263099219620958, 0.013377926421404682, 0.012263099219620958, 0.013377926421404682, 0.012263099219620958, 0.014492753623188406, 0.010033444816053512, 0.005574136008918618, 0.0033444816053511705, 0.0033444816053511705, 0.0033444816053511705, 0.004459308807134894, 0.011148272017837236, 0.06243032329988852, 0.024526198439241916, 0.033444816053511704, 0.02564102564102564, 0.022296544035674472, 0.02564102564102564, 0.9342251950947603, 0.03121516164994426, 0.04013377926421405, 0.054626532887402456, 0.07692307692307693, 0.11036789297658862, 0.11482720178372352, 0.12263099219620958, 0.14715719063545152, 0.20958751393534003], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF503.gap.json b/pfam_gap_rates/DUF503.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b60debba99ca412e971c33fc63de972c15ce16cc
--- /dev/null
+++ b/pfam_gap_rates/DUF503.gap.json
@@ -0,0 +1 @@
+{"family": "DUF503", "n_seqs": 446, "length": 88, "gap_rates": [0.2040358744394619, 0.10986547085201794, 0.07399103139013453, 0.042600896860986545, 0.03587443946188341, 0.03139013452914798, 0.026905829596412557, 0.02242152466367713, 0.02242152466367713, 0.017937219730941704, 0.020179372197309416, 0.02914798206278027, 0.01569506726457399, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.008968609865470852, 0.006726457399103139, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.04932735426008968, 0.008968609865470852, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.0, 0.0, 0.002242152466367713, 0.013452914798206279, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.006726457399103139, 0.01569506726457399, 0.017937219730941704, 0.9282511210762332, 0.033632286995515695, 0.03587443946188341, 0.04035874439461883, 0.04708520179372197, 0.07399103139013453, 0.11659192825112108, 0.21300448430493274, 0.3834080717488789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5050.gap.json b/pfam_gap_rates/DUF5050.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89cbf97a7f165c8fc06104a03d8175f5203910af
--- /dev/null
+++ b/pfam_gap_rates/DUF5050.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5063.gap.json b/pfam_gap_rates/DUF5063.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecd85bf47815a274c7720fb2b7423a25e72bc329
--- /dev/null
+++ b/pfam_gap_rates/DUF5063.gap.json
@@ -0,0 +1 @@
+{"family": "DUF5063", "n_seqs": 126, "length": 173, "gap_rates": [0.753968253968254, 0.4523809523809524, 0.3412698412698413, 0.2777777777777778, 0.20634920634920634, 0.11904761904761904, 0.10317460317460317, 0.06349206349206349, 0.05555555555555555, 0.047619047619047616, 0.047619047619047616, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.10317460317460317, 0.03968253968253968, 0.5079365079365079, 0.49206349206349204, 0.49206349206349204, 0.49206349206349204, 0.49206349206349204, 0.47619047619047616, 0.031746031746031744, 0.031746031746031744, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.42857142857142855, 0.06349206349206349, 0.03968253968253968, 0.06349206349206349, 0.11904761904761904, 0.4444444444444444, 0.3968253968253968, 0.2857142857142857, 0.031746031746031744, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.5158730158730159, 0.5238095238095238, 0.5396825396825397, 0.5238095238095238, 0.5158730158730159, 0.11904761904761904, 0.1111111111111111, 0.07142857142857142, 0.07142857142857142, 0.06349206349206349, 0.06349206349206349, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007936507936507936, 0.031746031746031744, 0.023809523809523808, 0.007936507936507936, 0.007936507936507936, 0.0, 0.0, 0.0, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4365079365079365, 0.5, 0.15079365079365079, 0.18253968253968253, 0.0, 0.0, 0.0, 0.0, 0.7222222222222222, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.05555555555555555, 0.6031746031746031, 0.5793650793650794, 0.5476190476190477, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.023809523809523808, 0.047619047619047616, 0.07936507936507936, 0.1349206349206349, 0.21428571428571427, 0.6190476190476191], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5103.gap.json b/pfam_gap_rates/DUF5103.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9521dc7f4e7c911c5d5661c49bde6cf5919c9aab
--- /dev/null
+++ b/pfam_gap_rates/DUF5103.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5122.gap.json b/pfam_gap_rates/DUF5122.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc95eac587e586b175c27d2c04f9ff527ef37e2a
--- /dev/null
+++ b/pfam_gap_rates/DUF5122.gap.json
@@ -0,0 +1 @@
+{"family": "DUF5122", "n_seqs": 925, "length": 42, "gap_rates": [0.4821621621621622, 0.2648648648648649, 0.18054054054054053, 0.10918918918918918, 0.06918918918918919, 0.03783783783783784, 0.034594594594594595, 0.03027027027027027, 0.03027027027027027, 0.022702702702702703, 0.022702702702702703, 0.022702702702702703, 0.024864864864864864, 0.3708108108108108, 0.16108108108108107, 0.8648648648648649, 0.9145945945945946, 0.9416216216216217, 0.9286486486486486, 0.892972972972973, 0.7913513513513514, 0.12972972972972974, 0.09837837837837837, 0.08324324324324324, 0.032432432432432434, 0.01945945945945946, 0.012972972972972972, 0.00972972972972973, 0.005405405405405406, 0.004324324324324324, 0.008648648648648649, 0.011891891891891892, 0.02054054054054054, 0.032432432432432434, 0.043243243243243246, 0.04540540540540541, 0.055135135135135134, 0.10270270270270271, 0.1318918918918919, 0.16324324324324324, 0.19027027027027027, 0.23135135135135135], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF543.gap.json b/pfam_gap_rates/DUF543.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc6cb64639be9778572d94ec9e9f8b2724a71263
--- /dev/null
+++ b/pfam_gap_rates/DUF543.gap.json
@@ -0,0 +1 @@
+{"family": "DUF543", "n_seqs": 281, "length": 74, "gap_rates": [0.900355871886121, 0.8505338078291815, 0.7651245551601423, 0.6583629893238434, 0.5409252669039146, 0.47330960854092524, 0.39501779359430605, 0.3309608540925267, 0.2669039145907473, 0.20284697508896798, 0.7686832740213523, 0.1423487544483986, 0.12811387900355872, 0.11743772241992882, 0.099644128113879, 0.08896797153024912, 0.08540925266903915, 0.08185053380782918, 0.07829181494661921, 0.07473309608540925, 0.06761565836298933, 0.060498220640569395, 0.060498220640569395, 0.05693950177935943, 0.05338078291814947, 0.0498220640569395, 0.0498220640569395, 0.042704626334519574, 0.03914590747330961, 0.03914590747330961, 0.03558718861209965, 0.03202846975088968, 0.03202846975088968, 0.03558718861209965, 0.028469750889679714, 0.03558718861209965, 0.03558718861209965, 0.028469750889679714, 0.03202846975088968, 0.03202846975088968, 0.02491103202846975, 0.03914590747330961, 0.02491103202846975, 0.05338078291814947, 0.042704626334519574, 0.7402135231316725, 0.7580071174377224, 0.7224199288256228, 0.02491103202846975, 0.014234875444839857, 0.017793594306049824, 0.017793594306049824, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.02491103202846975, 0.021352313167259787, 0.021352313167259787, 0.02491103202846975, 0.02491103202846975, 0.02491103202846975, 0.02491103202846975, 0.02491103202846975, 0.028469750889679714, 0.028469750889679714, 0.028469750889679714, 0.03202846975088968, 0.046263345195729534, 0.12099644128113879, 0.2099644128113879, 0.28825622775800713, 0.5729537366548043], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF616.gap.json b/pfam_gap_rates/DUF616.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b31df18473842634fa7d9b64ae5fb60a5f76a1e9
--- /dev/null
+++ b/pfam_gap_rates/DUF616.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF617.gap.json b/pfam_gap_rates/DUF617.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..066a07a9deb46022ca3611d9364e8329578c1652
--- /dev/null
+++ b/pfam_gap_rates/DUF617.gap.json
@@ -0,0 +1 @@
+{"family": "DUF617", "n_seqs": 268, "length": 195, "gap_rates": [0.417910447761194, 0.19776119402985073, 0.15298507462686567, 0.1455223880597015, 0.1455223880597015, 0.1455223880597015, 0.13805970149253732, 0.13805970149253732, 0.13432835820895522, 0.13805970149253732, 0.15671641791044777, 0.15298507462686567, 0.13432835820895522, 0.13432835820895522, 0.13432835820895522, 0.13059701492537312, 0.13059701492537312, 0.13059701492537312, 0.13059701492537312, 0.13059701492537312, 0.13059701492537312, 0.832089552238806, 0.13059701492537312, 0.12686567164179105, 0.12686567164179105, 0.12686567164179105, 0.13059701492537312, 0.13059701492537312, 0.13059701492537312, 0.13059701492537312, 0.13059701492537312, 0.12686567164179105, 0.1417910447761194, 0.13432835820895522, 0.11194029850746269, 0.11194029850746269, 0.10820895522388059, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.10820895522388059, 0.11940298507462686, 0.1044776119402985, 0.917910447761194, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.12686567164179105, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.11567164179104478, 0.11567164179104478, 0.11567164179104478, 0.13059701492537312, 0.13059701492537312, 0.26865671641791045, 0.7164179104477612, 0.6604477611940298, 0.6194029850746269, 0.5485074626865671, 0.40298507462686567, 0.7873134328358209, 0.835820895522388, 0.8843283582089553, 0.9029850746268657, 0.9291044776119403, 0.9402985074626866, 0.9067164179104478, 0.9029850746268657, 0.8656716417910447, 0.8246268656716418, 0.7686567164179104, 0.12686567164179105, 0.12313432835820895, 0.12313432835820895, 0.11940298507462686, 0.11567164179104478, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.8582089552238806, 0.11567164179104478, 0.11194029850746269, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.1044776119402985, 0.10074626865671642, 0.10074626865671642, 0.10074626865671642, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.07835820895522388, 0.07835820895522388, 0.07835820895522388, 0.08208955223880597, 0.08208955223880597, 0.07835820895522388, 0.07835820895522388, 0.07835820895522388, 0.10074626865671642, 0.12313432835820895, 0.1865671641791045, 0.1865671641791045, 0.19029850746268656, 0.17164179104477612, 0.3208955223880597, 0.19776119402985073, 0.6529850746268657, 0.7910447761194029, 0.8805970149253731, 0.9402985074626866, 0.914179104477612, 0.8432835820895522, 0.7425373134328358, 0.6119402985074627, 0.06716417910447761, 0.06716417910447761, 0.06716417910447761, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06716417910447761, 0.06343283582089553, 0.06343283582089553, 0.05970149253731343, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.06343283582089553, 0.8917910447761194, 0.9067164179104478, 0.9402985074626866, 0.9440298507462687, 0.917910447761194, 0.8992537313432836, 0.8843283582089553, 0.06343283582089553, 0.9253731343283582, 0.9402985074626866, 0.8432835820895522, 0.0708955223880597, 0.07462686567164178, 0.07462686567164178, 0.0708955223880597, 0.0708955223880597, 0.0708955223880597, 0.0708955223880597, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.09328358208955224], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF642.gap.json b/pfam_gap_rates/DUF642.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08ee01eff60c34ee1007d251e9498195c7d06de5
--- /dev/null
+++ b/pfam_gap_rates/DUF642.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF647.gap.json b/pfam_gap_rates/DUF647.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3580867e40403d626cea4d99ddb83d6ba601e0c7
--- /dev/null
+++ b/pfam_gap_rates/DUF647.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF668.gap.json b/pfam_gap_rates/DUF668.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75484601d388950dcc778687e1fe3bb4a544d67b
--- /dev/null
+++ b/pfam_gap_rates/DUF668.gap.json
@@ -0,0 +1 @@
+{"family": "DUF668", "n_seqs": 280, "length": 99, "gap_rates": [0.15714285714285714, 0.02857142857142857, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.025, 0.02142857142857143, 0.02857142857142857, 0.9321428571428572, 0.9392857142857143, 0.9392857142857143, 0.925, 0.04285714285714286, 0.03214285714285714, 0.03214285714285714, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.025, 0.45714285714285713, 0.4142857142857143, 0.6, 0.7571428571428571, 0.9285714285714286, 0.9428571428571428, 0.8964285714285715, 0.7321428571428571, 0.5035714285714286, 0.04642857142857143, 0.03571428571428571, 0.02857142857142857, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03571428571428571, 0.03214285714285714, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.039285714285714285, 0.039285714285714285, 0.039285714285714285, 0.060714285714285714, 0.21428571428571427], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF716.gap.json b/pfam_gap_rates/DUF716.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f74e545a44d0342fa7f9c654ea7dfbfc7f18bcd5
--- /dev/null
+++ b/pfam_gap_rates/DUF716.gap.json
@@ -0,0 +1 @@
+{"family": "DUF716", "n_seqs": 319, "length": 144, "gap_rates": [0.542319749216301, 0.2884012539184953, 0.21316614420062696, 0.13479623824451412, 0.10344827586206896, 0.08463949843260188, 0.06583072100313479, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.05956112852664577, 0.9498432601880877, 0.07210031347962383, 0.07523510971786834, 0.07523510971786834, 0.05642633228840126, 0.05329153605015674, 0.10658307210031348, 0.06269592476489028, 0.06269592476489028, 0.0438871473354232, 0.0438871473354232, 0.04075235109717868, 0.04075235109717868, 0.04075235109717868, 0.04075235109717868, 0.03761755485893417, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.034482758620689655, 0.034482758620689655, 0.02821316614420063, 0.025078369905956112, 0.025078369905956112, 0.02821316614420063, 0.02821316614420063, 0.03134796238244514, 0.03134796238244514, 0.03761755485893417, 0.03761755485893417, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.03134796238244514, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.04075235109717868, 0.04075235109717868, 0.03761755485893417, 0.04075235109717868, 0.0438871473354232, 0.0438871473354232, 0.047021943573667714, 0.047021943573667714, 0.05956112852664577, 0.047021943573667714, 0.050156739811912224, 0.05329153605015674, 0.23824451410658307, 0.45768025078369906, 0.43573667711598746, 0.43573667711598746, 0.43260188087774293, 0.43260188087774293, 0.42946708463949845, 0.9028213166144201, 0.9028213166144201, 0.42946708463949845, 0.45454545454545453, 0.45141065830721006, 0.5360501567398119, 0.5141065830721003, 0.3761755485893417, 0.5987460815047022, 0.9153605015673981, 0.9498432601880877, 0.9341692789968652, 0.768025078369906, 0.5956112852664577, 0.14733542319749215, 0.10658307210031348, 0.06896551724137931, 0.10031347962382445, 0.06583072100313479, 0.06269592476489028, 0.06896551724137931, 0.44200626959247646, 0.40752351097178685, 0.09404388714733543, 0.06583072100313479, 0.06583072100313479, 0.06269592476489028, 0.06583072100313479, 0.06583072100313479, 0.06896551724137931, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.07210031347962383, 0.07523510971786834, 0.08463949843260188, 0.19122257053291536, 0.23197492163009403, 0.64576802507837], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF788.gap.json b/pfam_gap_rates/DUF788.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13908feef578b177d9a8c737ad9729b80a91c54a
--- /dev/null
+++ b/pfam_gap_rates/DUF788.gap.json
@@ -0,0 +1 @@
+{"family": "DUF788", "n_seqs": 314, "length": 190, "gap_rates": [0.39171974522292996, 0.2929936305732484, 0.16560509554140126, 0.1592356687898089, 0.1592356687898089, 0.14968152866242038, 0.1464968152866242, 0.14012738853503184, 0.14012738853503184, 0.13694267515923567, 0.13694267515923567, 0.13694267515923567, 0.1337579617834395, 0.1305732484076433, 0.1305732484076433, 0.12738853503184713, 0.12738853503184713, 0.12738853503184713, 0.12420382165605096, 0.12420382165605096, 0.12420382165605096, 0.12420382165605096, 0.12420382165605096, 0.12420382165605096, 0.12101910828025478, 0.12420382165605096, 0.12101910828025478, 0.11464968152866242, 0.11146496815286625, 0.11146496815286625, 0.11146496815286625, 0.11146496815286625, 0.11146496815286625, 0.11146496815286625, 0.11464968152866242, 0.1178343949044586, 0.11464968152866242, 0.10828025477707007, 0.11146496815286625, 0.4171974522292994, 0.42356687898089174, 0.3471337579617834, 0.36942675159235666, 0.3471337579617834, 0.1464968152866242, 0.12101910828025478, 0.10509554140127389, 0.9426751592356688, 0.08917197452229299, 0.08598726114649681, 0.08598726114649681, 0.07961783439490445, 0.08280254777070063, 0.08280254777070063, 0.07961783439490445, 0.07961783439490445, 0.07643312101910828, 0.07643312101910828, 0.07961783439490445, 0.07961783439490445, 0.07961783439490445, 0.07961783439490445, 0.07643312101910828, 0.0732484076433121, 0.07643312101910828, 0.06687898089171974, 0.0732484076433121, 0.0732484076433121, 0.07006369426751592, 0.0732484076433121, 0.08280254777070063, 0.1305732484076433, 0.1305732484076433, 0.13694267515923567, 0.14331210191082802, 0.8280254777070064, 0.21337579617834396, 0.16560509554140126, 0.15286624203821655, 0.9044585987261147, 0.9299363057324841, 0.8503184713375797, 0.15286624203821655, 0.14012738853503184, 0.14012738853503184, 0.1337579617834395, 0.11146496815286625, 0.14968152866242038, 0.10191082802547771, 0.09554140127388536, 0.08917197452229299, 0.10191082802547771, 0.1178343949044586, 0.09872611464968153, 0.9140127388535032, 0.09235668789808917, 0.7038216560509554, 0.0732484076433121, 0.06050955414012739, 0.050955414012738856, 0.054140127388535034, 0.04777070063694268, 0.054140127388535034, 0.04777070063694268, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.3980891719745223, 0.05732484076433121, 0.17834394904458598, 0.04777070063694268, 0.0732484076433121, 0.9426751592356688, 0.06687898089171974, 0.05732484076433121, 0.05732484076433121, 0.054140127388535034, 0.054140127388535034, 0.054140127388535034, 0.0732484076433121, 0.054140127388535034, 0.05732484076433121, 0.05732484076433121, 0.06687898089171974, 0.06687898089171974, 0.06687898089171974, 0.06687898089171974, 0.0732484076433121, 0.0732484076433121, 0.07961783439490445, 0.08280254777070063, 0.08598726114649681, 0.5668789808917197, 0.09554140127388536, 0.09554140127388536, 0.09554140127388536, 0.09872611464968153, 0.11146496815286625, 0.8980891719745223, 0.9076433121019108, 0.8757961783439491, 0.12420382165605096, 0.1337579617834395, 0.7388535031847133, 0.8407643312101911, 0.89171974522293, 0.9299363057324841, 0.945859872611465, 0.9363057324840764, 0.9140127388535032, 0.8630573248407644, 0.7898089171974523, 0.6910828025477707, 0.5477707006369427, 0.6114649681528662, 0.7484076433121019, 0.2898089171974522, 0.23248407643312102, 0.2484076433121019, 0.3375796178343949, 0.28343949044585987, 0.27070063694267515, 0.23248407643312102, 0.18471337579617833, 0.17197452229299362, 0.1624203821656051, 0.15605095541401273, 0.15605095541401273, 0.15605095541401273, 0.15605095541401273, 0.15605095541401273, 0.1592356687898089, 0.16560509554140126, 0.1751592356687898, 0.18789808917197454, 0.19745222929936307, 0.27388535031847133, 0.3089171974522293, 0.3184713375796178, 0.3471337579617834, 0.410828025477707, 0.89171974522293], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF846.gap.json b/pfam_gap_rates/DUF846.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..feba264130752aba4d266bef5fa619058bd11b31
--- /dev/null
+++ b/pfam_gap_rates/DUF846.gap.json
@@ -0,0 +1 @@
+{"family": "DUF846", "n_seqs": 382, "length": 147, "gap_rates": [0.5759162303664922, 0.1806282722513089, 0.14397905759162305, 0.13350785340314136, 0.12827225130890052, 0.112565445026178, 0.112565445026178, 0.1099476439790576, 0.1099476439790576, 0.1099476439790576, 0.1099476439790576, 0.10732984293193717, 0.10471204188481675, 0.09947643979057591, 0.09947643979057591, 0.09947643979057591, 0.0968586387434555, 0.0968586387434555, 0.0968586387434555, 0.0968586387434555, 0.0968586387434555, 0.0968586387434555, 0.10471204188481675, 0.10471204188481675, 0.1099476439790576, 0.10471204188481675, 0.9424083769633508, 0.12041884816753927, 0.1256544502617801, 0.09162303664921466, 0.08376963350785341, 0.08115183246073299, 0.08115183246073299, 0.06282722513089005, 0.06282722513089005, 0.07068062827225131, 0.06282722513089005, 0.060209424083769635, 0.0549738219895288, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.05235602094240838, 0.0549738219895288, 0.05759162303664921, 0.060209424083769635, 0.060209424083769635, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.060209424083769635, 0.05759162303664921, 0.0549738219895288, 0.0549738219895288, 0.0549738219895288, 0.0549738219895288, 0.0549738219895288, 0.0549738219895288, 0.060209424083769635, 0.06282722513089005, 0.8010471204188482, 0.06806282722513089, 0.06544502617801047, 0.07068062827225131, 0.060209424083769635, 0.0549738219895288, 0.0549738219895288, 0.0549738219895288, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.7225130890052356, 0.918848167539267, 0.8900523560209425, 0.5863874345549738, 0.13089005235602094, 0.10732984293193717, 0.08638743455497382, 0.07853403141361257, 0.06806282722513089, 0.049738219895287955, 0.9450261780104712, 0.8795811518324608, 0.05235602094240838, 0.049738219895287955, 0.04712041884816754, 0.04712041884816754, 0.04450261780104712, 0.04450261780104712, 0.04712041884816754, 0.04712041884816754, 0.049738219895287955, 0.04712041884816754, 0.04450261780104712, 0.04450261780104712, 0.04450261780104712, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.03664921465968586, 0.03664921465968586, 0.03926701570680628, 0.03926701570680628, 0.03926701570680628, 0.03926701570680628, 0.03926701570680628, 0.03926701570680628, 0.041884816753926704, 0.041884816753926704, 0.04450261780104712, 0.04712041884816754, 0.049738219895287955, 0.04712041884816754, 0.049738219895287955, 0.08900523560209424, 0.08638743455497382, 0.060209424083769635, 0.05235602094240838, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.060209424083769635, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06544502617801047, 0.06544502617801047, 0.06544502617801047, 0.06544502617801047, 0.06806282722513089, 0.06806282722513089, 0.07329842931937172, 0.08900523560209424, 0.1806282722513089], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF881.gap.json b/pfam_gap_rates/DUF881.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c82389631ef9b543c3a3b6521094f4a56d7f5b27
--- /dev/null
+++ b/pfam_gap_rates/DUF881.gap.json
@@ -0,0 +1 @@
+{"family": "DUF881", "n_seqs": 675, "length": 163, "gap_rates": [0.7288888888888889, 0.31703703703703706, 0.20296296296296296, 0.13037037037037036, 0.07407407407407407, 0.04888888888888889, 0.04, 0.035555555555555556, 0.03111111111111111, 0.03111111111111111, 0.025185185185185185, 0.02074074074074074, 0.017777777777777778, 0.014814814814814815, 0.014814814814814815, 0.013333333333333334, 0.011851851851851851, 0.011851851851851851, 0.011851851851851851, 0.011851851851851851, 0.011851851851851851, 0.011851851851851851, 0.011851851851851851, 0.034074074074074076, 0.01925925925925926, 0.011851851851851851, 0.03111111111111111, 0.03111111111111111, 0.02962962962962963, 0.24, 0.2311111111111111, 0.24, 0.24444444444444444, 0.27111111111111114, 0.31407407407407406, 0.17777777777777778, 0.30666666666666664, 0.49037037037037035, 0.7037037037037037, 0.794074074074074, 0.8696296296296296, 0.922962962962963, 0.845925925925926, 0.7525925925925926, 0.6518518518518519, 0.35555555555555557, 0.28444444444444444, 0.005925925925925926, 0.005925925925925926, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.002962962962962963, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.9407407407407408, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.005925925925925926, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.002962962962962963, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.9348148148148148, 0.0044444444444444444, 0.0044444444444444444, 0.008888888888888889, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.9407407407407408, 0.8607407407407407, 0.0044444444444444444, 0.0044444444444444444, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.02074074074074074, 0.9392592592592592, 0.008888888888888889, 0.011851851851851851, 0.01037037037037037, 0.01037037037037037, 0.008888888888888889, 0.008888888888888889, 0.013333333333333334, 0.01037037037037037, 0.008888888888888889, 0.008888888888888889, 0.01037037037037037, 0.5777777777777777, 0.47555555555555556, 0.4577777777777778, 0.04296296296296296, 0.017777777777777778, 0.01037037037037037, 0.008888888888888889, 0.011851851851851851, 0.01037037037037037, 0.022222222222222223, 0.08592592592592592, 0.8874074074074074, 0.17629629629629628, 0.2903703703703704, 0.10074074074074074, 0.013333333333333334, 0.008888888888888889, 0.008888888888888889, 0.008888888888888889, 0.01037037037037037, 0.008888888888888889, 0.01037037037037037, 0.013333333333333334, 0.02666666666666667, 0.011851851851851851, 0.011851851851851851, 0.011851851851851851, 0.014814814814814815, 0.02074074074074074, 0.04296296296296296, 0.16592592592592592, 0.17925925925925926, 0.17037037037037037, 0.20296296296296296, 0.23407407407407407, 0.2518518518518518, 0.26666666666666666, 0.28444444444444444, 0.30814814814814817, 0.3540740740740741, 0.6548148148148148], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF898.gap.json b/pfam_gap_rates/DUF898.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f83bd2eb7cae6238ca973ec2bd6d80f4bd7a877c
--- /dev/null
+++ b/pfam_gap_rates/DUF898.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF916.gap.json b/pfam_gap_rates/DUF916.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f423f537217c9c4ede266a9026cf917cb07fc76
--- /dev/null
+++ b/pfam_gap_rates/DUF916.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF937.gap.json b/pfam_gap_rates/DUF937.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34c0028a87aff495b3fb8e10eec9b1995b2657df
--- /dev/null
+++ b/pfam_gap_rates/DUF937.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF969.gap.json b/pfam_gap_rates/DUF969.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7412a2ce28504e24f3c3bd366aca66c38d7071fe
--- /dev/null
+++ b/pfam_gap_rates/DUF969.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DXP_redisom_C.gap.json b/pfam_gap_rates/DXP_redisom_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d3f5d84845e07b7d3c5ec8c176299ce693be30e
--- /dev/null
+++ b/pfam_gap_rates/DXP_redisom_C.gap.json
@@ -0,0 +1 @@
+{"family": "DXP_redisom_C", "n_seqs": 1652, "length": 95, "gap_rates": [0.023002421307506054, 0.010895883777239709, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.010290556900726392, 0.7953995157384988, 0.8347457627118644, 0.8577481840193705, 0.9207021791767555, 0.9334140435835351, 0.9376513317191283, 0.927360774818402, 0.9067796610169492, 0.8444309927360775, 0.8062953995157385, 0.7929782082324455, 0.010290556900726392, 0.07808716707021791, 0.03934624697336562, 0.2148910411622276, 0.044794188861985475, 0.01937046004842615, 0.012711864406779662, 0.00847457627118644, 0.007869249394673124, 0.00847457627118644, 0.00847457627118644, 0.007869249394673124, 0.009079903147699757, 0.009079903147699757, 0.009079903147699757, 0.009079903147699757, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.009685230024213076, 0.014527845036319613, 0.0211864406779661, 0.021791767554479417, 0.010290556900726392, 0.009685230024213076, 0.00847457627118644, 0.007263922518159807, 0.006658595641646489, 0.006658595641646489, 0.006053268765133172, 0.006053268765133172, 0.006053268765133172, 0.006658595641646489, 0.006658595641646489, 0.006053268765133172, 0.006658595641646489, 0.006658595641646489, 0.007263922518159807, 0.007263922518159807, 0.00847457627118644, 0.007869249394673124, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.005447941888619854, 0.005447941888619854, 0.005447941888619854, 0.005447941888619854, 0.005447941888619854, 0.005447941888619854, 0.005447941888619854, 0.006053268765133172, 0.006658595641646489, 0.006658595641646489, 0.006658595641646489, 0.006658595641646489, 0.006658595641646489, 0.006658595641646489, 0.006658595641646489, 0.007263922518159807, 0.00847457627118644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DXP_synthase_N.gap.json b/pfam_gap_rates/DXP_synthase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..badf84baa77929c2af802c4b8abefde88e767ec7
--- /dev/null
+++ b/pfam_gap_rates/DXP_synthase_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dak2.gap.json b/pfam_gap_rates/Dak2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..098799618e2e4cf29747bfa30a5c7245584a7765
--- /dev/null
+++ b/pfam_gap_rates/Dak2.gap.json
@@ -0,0 +1 @@
+{"family": "Dak2", "n_seqs": 1896, "length": 189, "gap_rates": [0.40822784810126583, 0.07858649789029536, 0.04852320675105485, 0.046413502109704644, 0.046413502109704644, 0.04535864978902954, 0.044831223628691984, 0.04219409282700422, 0.04219409282700422, 0.04219409282700422, 0.03955696202531646, 0.03955696202531646, 0.039029535864978905, 0.03850210970464135, 0.0379746835443038, 0.037447257383966245, 0.03691983122362869, 0.037447257383966245, 0.037447257383966245, 0.03955696202531646, 0.03850210970464135, 0.037447257383966245, 0.0379746835443038, 0.0469409282700422, 0.054324894514767935, 0.7874472573839663, 0.9135021097046413, 0.6371308016877637, 0.10654008438818566, 0.05590717299578059, 0.039029535864978905, 0.03533755274261603, 0.03322784810126582, 0.031118143459915613, 0.03059071729957806, 0.0290084388185654, 0.029535864978902954, 0.029535864978902954, 0.0290084388185654, 0.02689873417721519, 0.02689873417721519, 0.02689873417721519, 0.02689873417721519, 0.026371308016877638, 0.03270042194092827, 0.026371308016877638, 0.026371308016877638, 0.026371308016877638, 0.02531645569620253, 0.02531645569620253, 0.025843881856540084, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.024789029535864978, 0.02689873417721519, 0.026371308016877638, 0.025843881856540084, 0.025843881856540084, 0.02531645569620253, 0.024789029535864978, 0.024261603375527425, 0.024261603375527425, 0.024261603375527425, 0.024261603375527425, 0.02531645569620253, 0.02531645569620253, 0.0680379746835443, 0.06487341772151899, 0.9235232067510548, 0.07120253164556962, 0.07647679324894514, 0.09282700421940929, 0.8771097046413502, 0.9219409282700421, 0.9404008438818565, 0.9055907172995781, 0.8718354430379747, 0.1271097046413502, 0.08913502109704641, 0.07383966244725738, 0.06381856540084388, 0.05010548523206751, 0.030063291139240507, 0.0290084388185654, 0.028481012658227847, 0.027953586497890294, 0.027953586497890294, 0.028481012658227847, 0.0290084388185654, 0.0290084388185654, 0.029535864978902954, 0.6007383966244726, 0.03059071729957806, 0.029535864978902954, 0.0290084388185654, 0.0290084388185654, 0.0290084388185654, 0.0290084388185654, 0.4393459915611814, 0.4224683544303797, 0.027426160337552744, 0.027426160337552744, 0.027953586497890294, 0.027953586497890294, 0.028481012658227847, 0.027953586497890294, 0.028481012658227847, 0.02689873417721519, 0.024789029535864978, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.024789029535864978, 0.025843881856540084, 0.02531645569620253, 0.025843881856540084, 0.026371308016877638, 0.02689873417721519, 0.027426160337552744, 0.0290084388185654, 0.027953586497890294, 0.8428270042194093, 0.035864978902953586, 0.07436708860759493, 0.1070675105485232, 0.49103375527426163, 0.35337552742616035, 0.27162447257383965, 0.24367088607594936, 0.22943037974683544, 0.2231012658227848, 0.2109704641350211, 0.1962025316455696, 0.0580168776371308, 0.04377637130801688, 0.037447257383966245, 0.03322784810126582, 0.031118143459915613, 0.03164556962025317, 0.03059071729957806, 0.030063291139240507, 0.029535864978902954, 0.030063291139240507, 0.03059071729957806, 0.03059071729957806, 0.03217299578059072, 0.03270042194092827, 0.03375527426160337, 0.03375527426160337, 0.03481012658227848, 0.03481012658227848, 0.034282700421940926, 0.035864978902953586, 0.035864978902953586, 0.03691983122362869, 0.03691983122362869, 0.03691983122362869, 0.03850210970464135, 0.44936708860759494, 0.44831223628691985, 0.4477848101265823, 0.4472573839662447, 0.4462025316455696, 0.4467299578059072, 0.4462025316455696, 0.4467299578059072, 0.895042194092827, 0.04430379746835443, 0.939873417721519, 0.9435654008438819, 0.9393459915611815, 0.03691983122362869, 0.03691983122362869, 0.03691983122362869, 0.03691983122362869, 0.037447257383966245, 0.037447257383966245, 0.037447257383966245, 0.037447257383966245, 0.037447257383966245, 0.0379746835443038, 0.03850210970464135, 0.03850210970464135, 0.04008438818565401, 0.043248945147679324, 0.049578059071729956, 0.07225738396624473, 0.25738396624472576], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DctP.gap.json b/pfam_gap_rates/DctP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4f7904f25be41c2da91e10ef430668e92fbc2fc
--- /dev/null
+++ b/pfam_gap_rates/DctP.gap.json
@@ -0,0 +1 @@
+{"family": "DctP", "n_seqs": 4336, "length": 299, "gap_rates": [0.8032749077490775, 0.6263837638376384, 0.5196033210332104, 0.45272140221402213, 0.39183579335793356, 0.32656826568265684, 0.2901291512915129, 0.2624538745387454, 0.24723247232472326, 0.2331642066420664, 0.2154059040590406, 0.19095940959409594, 0.1732011070110701, 0.15682656826568267, 0.13238007380073802, 0.8927583025830258, 0.1070110701107011, 0.08971402214022141, 0.08394833948339483, 0.07726014760147601, 0.0643450184501845, 0.05581180811808118, 0.05189114391143911, 0.050276752767527674, 0.04981549815498155, 0.06595940959409594, 0.05350553505535055, 0.04958487084870849, 0.050276752767527674, 0.044972324723247234, 0.043357933579335796, 0.041051660516605165, 0.038514760147601475, 0.038284132841328415, 0.03782287822878229, 0.04312730627306273, 0.043588560885608855, 0.041051660516605165, 0.04474169741697417, 0.03805350553505535, 0.03643911439114391, 0.035747232472324725, 0.03274907749077491, 0.031826568265682656, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DctQ.gap.json b/pfam_gap_rates/DctQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b74e11fe60c034ac110b8b61a4a3fb2b04e2000
--- /dev/null
+++ b/pfam_gap_rates/DctQ.gap.json
@@ -0,0 +1 @@
+{"family": "DctQ", "n_seqs": 3683, "length": 144, "gap_rates": [0.4523486288351887, 0.1512354059190877, 0.0781971219114852, 0.05973391257127342, 0.04642954113494434, 0.03964159652457236, 0.034211240836274776, 0.0325821341297855, 0.030681509638881346, 0.02905240293239207, 0.027694814010317675, 0.027151778441487917, 0.027423296225902796, 0.0260657073038284, 0.9497692098832473, 0.11973934292696171, 0.06326364376866685, 0.03312516969861526, 0.010589193592180288, 0.009503122454520771, 0.008688569101276133, 0.9193592180287808, 0.008145533532446375, 0.024979636166168884, 0.005158837903882704, 0.004887320119467825, 0.004615802335052946, 0.004615802335052946, 0.005158837903882704, 0.004887320119467825, 0.004344284550638067, 0.0035297311973934292, 0.0035297311973934292, 0.0035297311973934292, 0.002986695628563671, 0.002986695628563671, 0.004344284550638067, 0.002986695628563671, 0.002986695628563671, 0.002986695628563671, 0.002986695628563671, 0.002986695628563671, 0.0027151778441487917, 0.00325821341297855, 0.002986695628563671, 0.0027151778441487917, 0.004344284550638067, 0.0024436600597339125, 0.0024436600597339125, 0.0024436600597339125, 0.0021721422753190334, 0.0021721422753190334, 0.0019006244909041542, 0.0019006244909041542, 0.0019006244909041542, 0.011675264729839804, 0.005430355688297583, 0.004615802335052946, 0.004344284550638067, 0.011403746945424925, 0.004615802335052946, 0.0040727667662231876, 0.0038012489818083084, 0.0027151778441487917, 0.0024436600597339125, 0.0027151778441487917, 0.002986695628563671, 0.002986695628563671, 0.00325821341297855, 0.002986695628563671, 0.002986695628563671, 0.00325821341297855, 0.00325821341297855, 0.9405376052131414, 0.00325821341297855, 0.0038012489818083084, 0.0038012489818083084, 0.0038012489818083084, 0.9060548465924518, 0.006244909041542221, 0.005158837903882704, 0.005430355688297583, 0.004615802335052946, 0.004344284550638067, 0.004615802335052946, 0.004887320119467825, 0.005430355688297583, 0.004887320119467825, 0.004615802335052946, 0.6323649199022536, 0.9212598425196851, 0.9399945696443117, 0.9484116209611729, 0.9359218028780885, 0.8767309258756448, 0.3518870486016834, 0.31740428998099374, 0.040727667662231876, 0.014390442573988596, 0.013575889220743959, 0.012218300298669563, 0.009503122454520771, 0.009503122454520771, 0.01004615802335053, 0.010317675807765408, 0.010860711376595167, 0.012489818083084442, 0.01330437143632908, 0.013847407005158838, 0.015204995927233234, 0.01629106706489275, 0.012218300298669563, 0.9454249253326092, 0.890035297311974, 0.012218300298669563, 0.012218300298669563, 0.012761335867499321, 0.013575889220743959, 0.014118924789573717, 0.013575889220743959, 0.015748031496062992, 0.018734727124626663, 0.01629106706489275, 0.015476513711648113, 0.015476513711648113, 0.015204995927233234, 0.015204995927233234, 0.015476513711648113, 0.01601954928047787, 0.01656258484930763, 0.017105620418137388, 0.017377138202552267, 0.018191691555796904, 0.020635351615530817, 0.02253597610643497, 0.02959543850122183, 0.0469725767037741, 0.07222373065435786, 0.09666033125169698, 0.12897094759706762, 0.2177572631007331, 0.3163182188433342, 0.4661960358403475, 0.784414879174586], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DegS.gap.json b/pfam_gap_rates/DegS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f8c38b6d3cd4ec1f55294135edfc015a88a4037
--- /dev/null
+++ b/pfam_gap_rates/DegS.gap.json
@@ -0,0 +1 @@
+{"family": "DegS", "n_seqs": 166, "length": 159, "gap_rates": [0.19879518072289157, 0.13855421686746988, 0.10843373493975904, 0.0963855421686747, 0.08433734939759036, 0.0783132530120482, 0.06626506024096386, 0.06626506024096386, 0.06626506024096386, 0.06626506024096386, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04216867469879518, 0.03614457831325301, 0.03614457831325301, 0.024096385542168676, 0.024096385542168676, 0.018072289156626505, 0.018072289156626505, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.018072289156626505, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.018072289156626505, 0.018072289156626505, 0.024096385542168676, 0.024096385542168676, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.03614457831325301, 0.04819277108433735, 0.04819277108433735, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.060240963855421686, 0.060240963855421686, 0.06626506024096386, 0.0783132530120482, 0.08433734939759036, 0.08433734939759036, 0.0963855421686747, 0.10240963855421686, 0.10240963855421686, 0.10240963855421686, 0.10240963855421686, 0.10240963855421686, 0.10843373493975904, 0.1144578313253012, 0.1144578313253012, 0.12048192771084337, 0.13253012048192772, 0.13253012048192772, 0.14457831325301204, 0.16265060240963855, 0.27710843373493976], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DeoC.gap.json b/pfam_gap_rates/DeoC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd1b8b08dd3f46029fd96a8cbdc281c12f1337db
--- /dev/null
+++ b/pfam_gap_rates/DeoC.gap.json
@@ -0,0 +1 @@
+{"family": "DeoC", "n_seqs": 2384, "length": 313, "gap_rates": [0.9471476510067114, 0.6887583892617449, 0.5591442953020134, 0.4886744966442953, 0.3804530201342282, 0.2797818791946309, 0.24328859060402686, 0.23447986577181207, 0.2294463087248322, 0.23447986577181207, 0.23154362416107382, 0.2294463087248322, 0.22399328859060402, 0.21728187919463088, 0.22399328859060402, 0.21686241610738255, 0.2160234899328859, 0.24580536912751677, 0.7311241610738255, 0.7046979865771812, 0.6895973154362416, 0.9194630872483222, 0.9391778523489933, 0.9450503355704698, 0.9379194630872483, 0.9169463087248322, 0.636744966442953, 0.5989932885906041, 0.5792785234899329, 0.4211409395973154, 0.07885906040268456, 0.07550335570469799, 0.07424496644295302, 0.06879194630872483, 0.06837248322147652, 0.06879194630872483, 0.07088926174496644, 0.06921140939597316, 0.0700503355704698, 0.06963087248322147, 0.07214765100671142, 0.05704697986577181, 0.826761744966443, 0.8779362416107382, 0.8896812080536913, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Dev_Cell_Death.gap.json b/pfam_gap_rates/Dev_Cell_Death.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e457e673d771133c57b299199f609648488db751
--- /dev/null
+++ b/pfam_gap_rates/Dev_Cell_Death.gap.json
@@ -0,0 +1 @@
+{"family": "Dev_Cell_Death", "n_seqs": 295, "length": 132, "gap_rates": [0.3525423728813559, 0.13559322033898305, 0.12203389830508475, 0.11864406779661017, 0.11864406779661017, 0.10508474576271186, 0.10508474576271186, 0.1016949152542373, 0.1016949152542373, 0.09830508474576272, 0.09491525423728814, 0.08135593220338982, 0.07796610169491526, 0.0711864406779661, 0.0711864406779661, 0.0711864406779661, 0.0711864406779661, 0.0711864406779661, 0.06440677966101695, 0.06440677966101695, 0.061016949152542375, 0.0576271186440678, 0.0576271186440678, 0.0576271186440678, 0.0576271186440678, 0.061016949152542375, 0.06440677966101695, 0.0576271186440678, 0.0576271186440678, 0.0576271186440678, 0.05423728813559322, 0.05423728813559322, 0.05423728813559322, 0.05423728813559322, 0.05423728813559322, 0.05423728813559322, 0.05423728813559322, 0.03728813559322034, 0.04067796610169491, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.020338983050847456, 0.020338983050847456, 0.023728813559322035, 0.023728813559322035, 0.02711864406779661, 0.03728813559322034, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.04067796610169491, 0.04067796610169491, 0.288135593220339, 0.288135593220339, 0.43050847457627117, 0.6406779661016949, 0.9322033898305084, 0.4440677966101695, 0.43050847457627117, 0.29491525423728815, 0.04745762711864407, 0.04745762711864407, 0.04745762711864407, 0.04745762711864407, 0.04745762711864407, 0.04745762711864407, 0.04067796610169491, 0.04745762711864407, 0.05084745762711865, 0.0576271186440678, 0.06779661016949153, 0.07796610169491526, 0.08813559322033898, 0.08813559322033898, 0.09152542372881356, 0.09152542372881356, 0.09830508474576272, 0.09830508474576272, 0.1016949152542373, 0.10847457627118644, 0.1152542372881356, 0.11864406779661017, 0.12203389830508475, 0.1288135593220339, 0.1288135593220339, 0.1288135593220339, 0.13220338983050847, 0.13898305084745763, 0.1694915254237288, 0.43728813559322033, 0.16271186440677965, 0.17288135593220338, 0.17627118644067796, 0.4745762711864407, 0.559322033898305, 0.46779661016949153, 0.14576271186440679, 0.14576271186440679, 0.14576271186440679, 0.17288135593220338, 0.15593220338983052, 0.14915254237288136, 0.14915254237288136, 0.14915254237288136, 0.14915254237288136, 0.14915254237288136, 0.14915254237288136, 0.15593220338983052, 0.16610169491525423, 0.17627118644067796, 0.17627118644067796, 0.17966101694915254, 0.18305084745762712, 0.20677966101694914, 0.376271186440678], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dimerisation.gap.json b/pfam_gap_rates/Dimerisation.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22c38ce0532530e7d9e4a7292c126aaabdbfaa0f
--- /dev/null
+++ b/pfam_gap_rates/Dimerisation.gap.json
@@ -0,0 +1 @@
+{"family": "Dimerisation", "n_seqs": 725, "length": 54, "gap_rates": [0.3117241379310345, 0.04, 0.01793103448275862, 0.015172413793103448, 0.015172413793103448, 0.012413793103448275, 0.009655172413793104, 0.009655172413793104, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.005517241379310344, 0.004137931034482759, 0.004137931034482759, 0.004137931034482759, 0.005517241379310344, 0.004137931034482759, 0.004137931034482759, 0.022068965517241378, 0.7531034482758621, 0.5889655172413794, 0.9489655172413793, 0.02620689655172414, 0.002758620689655172, 0.0, 0.002758620689655172, 0.002758620689655172, 0.002758620689655172, 0.004137931034482759, 0.005517241379310344, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.008275862068965517, 0.008275862068965517, 0.5406896551724137, 0.8662068965517241, 0.03586206896551724, 0.038620689655172416, 0.04275862068965517, 0.020689655172413793, 0.02620689655172414, 0.022068965517241378, 0.030344827586206897, 0.020689655172413793, 0.01793103448275862, 0.013793103448275862, 0.016551724137931035, 0.01793103448275862, 0.01793103448275862, 0.01793103448275862, 0.019310344827586208, 0.02620689655172414, 0.09517241379310344], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DisA-linker.gap.json b/pfam_gap_rates/DisA-linker.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc0efdb2657efe4a30e4fdba5288b19bcbff186b
--- /dev/null
+++ b/pfam_gap_rates/DisA-linker.gap.json
@@ -0,0 +1 @@
+{"family": "DisA-linker", "n_seqs": 335, "length": 144, "gap_rates": [0.1880597014925373, 0.056716417910447764, 0.026865671641791045, 0.014925373134328358, 0.008955223880597015, 0.008955223880597015, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.008955223880597015, 0.005970149253731343, 0.0029850746268656717, 0.0029850746268656717, 0.0029850746268656717, 0.0029850746268656717, 0.0029850746268656717, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0029850746268656717, 0.0, 0.005970149253731343, 0.008955223880597015, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.2, 0.3940298507462687, 0.8029850746268656, 0.8328358208955224, 0.6328358208955224, 0.020895522388059702, 0.008955223880597015, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.008955223880597015, 0.008955223880597015, 0.008955223880597015, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.008955223880597015, 0.005970149253731343, 0.011940298507462687, 0.008955223880597015, 0.008955223880597015, 0.005970149253731343, 0.005970149253731343, 0.008955223880597015, 0.011940298507462687, 0.011940298507462687, 0.008955223880597015, 0.008955223880597015, 0.005970149253731343, 0.005970149253731343, 0.008955223880597015, 0.011940298507462687, 0.020895522388059702, 0.020895522388059702, 0.026865671641791045, 0.07164179104477612, 0.2716417910447761, 0.4507462686567164, 0.608955223880597, 0.9194029850746268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DltD_C.gap.json b/pfam_gap_rates/DltD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a47d356d096b9945f42d33438ff4a70696f8c72
--- /dev/null
+++ b/pfam_gap_rates/DltD_C.gap.json
@@ -0,0 +1 @@
+{"family": "DltD_C", "n_seqs": 152, "length": 130, "gap_rates": [0.27631578947368424, 0.10526315789473684, 0.09210526315789473, 0.09210526315789473, 0.08552631578947369, 0.08552631578947369, 0.08552631578947369, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.1118421052631579, 0.09210526315789473, 0.09210526315789473, 0.08552631578947369, 0.08552631578947369, 0.8881578947368421, 0.15789473684210525, 0.13815789473684212, 0.13157894736842105, 0.09868421052631579, 0.06578947368421052, 0.06578947368421052, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.039473684210526314, 0.039473684210526314, 0.9078947368421053, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.013157894736842105, 0.013157894736842105, 0.02631578947368421, 0.02631578947368421, 0.019736842105263157, 0.05263157894736842, 0.046052631578947366, 0.019736842105263157, 0.013157894736842105, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.5197368421052632, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.013157894736842105, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.019736842105263157, 0.02631578947368421, 0.039473684210526314, 0.05263157894736842, 0.06578947368421052, 0.09210526315789473, 0.17763157894736842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DnaB_2.gap.json b/pfam_gap_rates/DnaB_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..426e6431d85e848e630ce94392a0895ae74cb511
--- /dev/null
+++ b/pfam_gap_rates/DnaB_2.gap.json
@@ -0,0 +1 @@
+{"family": "DnaB_2", "n_seqs": 1223, "length": 76, "gap_rates": [0.8192968111201963, 0.6377759607522485, 0.5028618152085037, 0.4488961569910057, 0.428454619787408, 0.39983646770237125, 0.3777596075224857, 0.31561733442354867, 0.2542927228127555, 0.2706459525756337, 0.1635322976287817, 0.11447260834014718, 0.0973017170891251, 0.08585445625511039, 0.07195421095666395, 0.05151267375306623, 0.03434178250204415, 0.022894521668029435, 0.02044153720359771, 0.016353229762878167, 0.014717906786590351, 0.014717906786590351, 0.012264922322158627, 0.018806214227309895, 0.011447260834014717, 0.03188879803761243, 0.11365494685200327, 0.09239574816026165, 0.07440719542109567, 0.004905968928863451, 0.003270645952575634, 0.0024529844644317253, 0.0024529844644317253, 0.0024529844644317253, 0.001635322976287817, 0.0008176614881439084, 0.0008176614881439084, 0.0008176614881439084, 0.0, 0.0008176614881439084, 0.0, 0.01553556827473426, 0.7792313982011447, 0.01062959934587081, 0.003270645952575634, 0.8887980376124285, 0.6704824202780049, 0.003270645952575634, 0.005723630417007359, 0.004088307440719542, 0.017170891251022075, 0.0024529844644317253, 0.001635322976287817, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001635322976287817, 0.004088307440719542, 0.008176614881439084, 0.008176614881439084, 0.01553556827473426, 0.018806214227309895, 0.022076860179885527, 0.047424366312346686, 0.05396565821749796, 0.06541291905151267, 0.06950122649223221, 0.07277187244480784, 0.07849550286181521, 0.0874897792313982, 0.1439084219133279, 0.2616516762060507, 0.5396565821749796], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DnaJ_C.gap.json b/pfam_gap_rates/DnaJ_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7dceaa54700ae3211553bef134a6c6287a267c6
--- /dev/null
+++ b/pfam_gap_rates/DnaJ_C.gap.json
@@ -0,0 +1 @@
+{"family": "DnaJ_C", "n_seqs": 5000, "length": 235, "gap_rates": [0.7196, 0.3192, 0.1476, 0.0856, 0.0664, 0.0614, 0.0598, 0.0592, 0.059, 0.0588, 0.0578, 0.0572, 0.0568, 0.056, 0.056, 0.057, 0.0564, 0.0568, 0.055, 0.0552, 0.0552, 0.0562, 0.058, 0.0786, 0.1542, 0.183, 0.1712, 0.207, 0.2096, 0.2748, 0.3366, 0.3394, 0.3412, 0.3418, 0.3428, 0.3456, 0.3484, 0.35, 0.3536, 0.3554, 0.3554, 0.3558, 0.3562, 0.3572, 0.3574, 0.3574, 0.3576, 0.3788, 0.3806, 0.382, 0.3842, 0.386, 0.3868, 0.388, 0.389, 0.4012, 0.4114, 0.5664, 0.6036, 0.8604, 0.912, 0.6436, 0.5916, 0.4254, 0.406, 0.3942, 0.3886, 0.3874, 0.3864, 0.3854, 0.3834, 0.381, 0.38, 0.378, 0.3576, 0.3574, 0.3574, 0.3568, 0.356, 0.3554, 0.3554, 0.354, 0.352, 0.3492, 0.3476, 0.3438, 0.3422, 0.3414, 0.3398, 0.3382, 0.3182, 0.2172, 0.209, 0.1938, 0.1594, 0.1688, 0.1844, 0.1618, 0.0786, 0.0338, 0.0304, 0.028, 0.0276, 0.027, 0.0264, 0.026, 0.0254, 0.025, 0.025, 0.0242, 0.0244, 0.0238, 0.024, 0.0238, 0.0238, 0.0218, 0.0212, 0.0216, 0.024, 0.0304, 0.0404, 0.033, 0.0342, 0.3204, 0.3676, 0.4902, 0.3352, 0.2556, 0.1814, 0.1282, 0.0566, 0.7208, 0.76, 0.8696, 0.7284, 0.706, 0.0368, 0.0252, 0.023, 0.0224, 0.021, 0.0202, 0.02, 0.023, 0.0234, 0.0346, 0.0302, 0.0268, 0.0226, 0.023, 0.0214, 0.0206, 0.0204, 0.0224, 0.0208, 0.0206, 0.0204, 0.02, 0.0198, 0.0188, 0.0188, 0.0212, 0.02, 0.0188, 0.0184, 0.0188, 0.0182, 0.019, 0.0188, 0.0194, 0.0202, 0.0192, 0.9494, 0.0204, 0.0316, 0.0304, 0.0274, 0.0312, 0.0362, 0.0296, 0.0278, 0.815, 0.0278, 0.0274, 0.0276, 0.027, 0.0272, 0.0348, 0.7224, 0.7854, 0.8964, 0.858, 0.7264, 0.7002, 0.0282, 0.0248, 0.3024, 0.3096, 0.2944, 0.0248, 0.0252, 0.025, 0.025, 0.0256, 0.0254, 0.0258, 0.0272, 0.0262, 0.0264, 0.0268, 0.0276, 0.0284, 0.0292, 0.0302, 0.0336, 0.0362, 0.1866, 0.9266, 0.6158, 0.1086, 0.0594, 0.0404, 0.037, 0.0368, 0.0364, 0.037, 0.037, 0.037, 0.0378, 0.039, 0.0436, 0.0476, 0.0546, 0.0624, 0.0714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dpy19.gap.json b/pfam_gap_rates/Dpy19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..000033f6a619c438ffd961b054510c19442afea3
--- /dev/null
+++ b/pfam_gap_rates/Dpy19.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DrsE.gap.json b/pfam_gap_rates/DrsE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60520e9e6f62e4d9d2fd05ee273ebdfdfd3717a4
--- /dev/null
+++ b/pfam_gap_rates/DrsE.gap.json
@@ -0,0 +1 @@
+{"family": "DrsE", "n_seqs": 1722, "length": 150, "gap_rates": [0.7444831591173054, 0.6341463414634146, 0.5412311265969802, 0.4959349593495935, 0.4715447154471545, 0.4570267131242741, 0.43844367015098723, 0.4291521486643438, 0.5098722415795587, 0.5127758420441347, 0.5493612078977933, 0.5249709639953543, 0.3867595818815331, 0.3681765389082462, 0.3606271777003484, 0.4349593495934959, 0.33797909407665505, 0.3170731707317073, 0.30720092915214864, 0.29442508710801396, 0.2851335656213705, 0.2764227642276423, 0.25493612078977934, 0.24448315911730545, 0.23344947735191637, 0.22531939605110338, 0.2183507549361208, 0.21370499419279906, 0.21196283391405343, 0.20557491289198607, 0.16202090592334495, 0.7473867595818815, 0.8159117305458768, 0.8623693379790941, 0.9175377468060395, 0.9494773519163763, 0.9059233449477352, 0.8437862950058072, 0.7897793263646922, 0.7171893147502904, 0.1440185830429733, 0.13704994192799072, 0.13008130081300814, 0.10511033681765389, 0.8739837398373984, 0.07549361207897794, 0.07084785133565621, 0.06678281068524972, 0.0627177700348432, 0.06039488966318235, 0.0586527293844367, 0.05749128919860627, 0.05516840882694541, 0.05400696864111498, 0.053426248548199766, 0.05168408826945412, 0.05226480836236934, 0.05226480836236934, 0.7572590011614402, 0.8879210220673636, 0.9291521486643438, 0.9483159117305459, 0.9413472706155633, 0.9169570267131243, 0.8583042973286876, 0.7497096399535423, 0.5464576074332171, 0.44773519163763065, 0.4425087108013937, 0.3124274099883856, 0.21370499419279906, 0.1991869918699187, 0.3321718931475029, 0.2961672473867596, 0.21312427409988385, 0.18641114982578397, 0.12833914053426249, 0.03716608594657375, 0.02497096399535424, 0.0156794425087108, 0.012775842044134728, 0.011614401858304297, 0.008710801393728223, 0.006968641114982578, 0.006387921022067364, 0.006387921022067364, 0.006968641114982578, 0.8536585365853658, 0.005807200929152149, 0.0272938443670151, 0.8461091753774681, 0.041811846689895474, 0.013356562137049941, 0.008130081300813009, 0.005226480836236934, 0.006968641114982578, 0.009291521486643438, 0.010452961672473868, 0.010452961672473868, 0.011033681765389082, 0.015098722415795587, 0.015098722415795587, 0.011614401858304297, 0.013356562137049941, 0.0156794425087108, 0.01916376306620209, 0.01916376306620209, 0.12253193960511034, 0.13066202090592335, 0.2450638792102207, 0.8403019744483159, 0.8914053426248548, 0.9088269454123112, 0.9163763066202091, 0.9221835075493612, 0.9175377468060395, 0.9152148664343787, 0.8977932636469221, 0.8774680603948897, 0.8310104529616724, 0.16898954703832753, 0.06736353077816493, 0.7177700348432056, 0.8588850174216028, 0.5813008130081301, 0.10801393728222997, 0.9198606271777003, 0.11788617886178862, 0.04065040650406504, 0.04355400696864112, 0.04819976771196283, 0.04819976771196283, 0.056329849012775844, 0.0627177700348432, 0.070267131242741, 0.070267131242741, 0.07259001161440186, 0.08188153310104529, 0.09233449477351917, 0.1173054587688734, 0.13066202090592335, 0.1445993031358885, 0.1562137049941928, 0.1718931475029036, 0.19221835075493612, 0.21544715447154472, 0.22125435540069685, 0.24332171893147503, 0.3310104529616725, 0.5423925667828107], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DsbD_2.gap.json b/pfam_gap_rates/DsbD_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fea02ed01529d4f89eb1a9ae600316a945884839
--- /dev/null
+++ b/pfam_gap_rates/DsbD_2.gap.json
@@ -0,0 +1 @@
+{"family": "DsbD_2", "n_seqs": 897, "length": 264, "gap_rates": [0.7469342251950948, 0.27201783723522854, 0.19063545150501673, 0.17837235228539577, 0.17279821627647715, 0.1716833890746934, 0.16945373467112598, 0.16833890746934224, 0.16833890746934224, 0.16833890746934224, 0.16833890746934224, 0.6365663322185061, 0.16833890746934224, 0.16833890746934224, 0.16722408026755853, 0.16722408026755853, 0.1527313266443701, 0.1527313266443701, 0.1527313266443701, 0.1505016722408027, 0.14827201783723523, 0.14715719063545152, 0.14604236343366778, 0.1426978818283166, 0.14046822742474915, 0.13823857302118173, 0.13600891861761427, 0.13600891861761427, 0.13600891861761427, 0.6822742474916388, 0.7670011148272018, 0.8517279821627648, 0.9141583054626533, 0.9386845039018952, 0.8840579710144928, 0.8272017837235228, 0.7134894091415831, 0.6644370122630993, 0.14046822742474915, 0.7591973244147158, 0.875139353400223, 0.9453734671125975, 0.9108138238573021, 0.810479375696767, 0.7134894091415831, 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\ No newline at end of file
diff --git a/pfam_gap_rates/E1_DerP2_DerF2.gap.json b/pfam_gap_rates/E1_DerP2_DerF2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..448a070a3e38b39386e6e187abfeca6467789f97
--- /dev/null
+++ b/pfam_gap_rates/E1_DerP2_DerF2.gap.json
@@ -0,0 +1 @@
+{"family": "E1_DerP2_DerF2", "n_seqs": 782, "length": 171, "gap_rates": [0.5754475703324808, 0.3772378516624041, 0.25191815856777494, 0.22762148337595908, 0.20843989769820973, 0.2020460358056266, 0.8913043478260869, 0.20332480818414322, 0.3388746803069054, 0.5933503836317136, 0.40664961636828645, 0.34782608695652173, 0.2851662404092072, 0.21994884910485935, 0.15217391304347827, 0.17902813299232737, 0.170076726342711, 0.13043478260869565, 0.11764705882352941, 0.10613810741687979, 0.10613810741687979, 0.10230179028132992, 0.0959079283887468, 0.649616368286445, 0.6713554987212276, 0.9194373401534527, 0.8823529411764706, 0.6636828644501279, 0.6253196930946292, 0.15089514066496162, 0.08184143222506395, 0.5473145780051151, 0.08312020460358056, 0.0792838874680307, 0.0741687979539642, 0.07289002557544758, 0.06905370843989769, 0.06777493606138107, 0.06649616368286446, 0.06521739130434782, 0.0639386189258312, 0.06265984654731457, 0.06265984654731457, 0.06265984654731457, 0.058823529411764705, 0.058823529411764705, 0.4731457800511509, 0.0639386189258312, 0.052429667519181586, 0.04603580562659847, 0.043478260869565216, 0.04092071611253197, 0.03324808184143223, 0.029411764705882353, 0.026854219948849106, 0.03580562659846547, 0.052429667519181586, 0.056265984654731455, 0.9194373401534527, 0.8861892583120204, 0.056265984654731455, 0.021739130434782608, 0.01918158567774936, 0.020460358056265986, 0.023017902813299233, 0.017902813299232736, 0.024296675191815855, 0.3069053708439898, 0.8554987212276215, 0.5, 0.049872122762148335, 0.024296675191815855, 0.015345268542199489, 0.01278772378516624, 0.01278772378516624, 0.015345268542199489, 0.90153452685422, 0.9104859335038363, 0.9053708439897699, 0.8516624040920716, 0.5524296675191815, 0.5179028132992327, 0.5051150895140665, 0.07161125319693094, 0.24808184143222506, 0.8657289002557544, 0.010230179028132993, 0.0038363171355498722, 0.0038363171355498722, 0.005115089514066497, 0.15089514066496162, 0.4424552429667519, 0.6406649616368286, 0.8312020460358056, 0.8823529411764706, 0.8887468030690537, 0.8900255754475703, 0.8976982097186701, 0.9245524296675192, 0.9450127877237852, 0.9322250639386189, 0.9117647058823529, 0.8938618925831202, 0.8900255754475703, 0.8861892583120204, 0.8465473145780051, 0.7647058823529411, 0.6163682864450127, 0.45268542199488493, 0.23145780051150894, 0.18286445012787725, 0.08567774936061381, 0.01278772378516624, 0.011508951406649617, 0.00639386189258312, 0.008951406649616368, 0.00639386189258312, 0.024296675191815855, 0.00639386189258312, 0.00639386189258312, 0.008951406649616368, 0.44501278772378516, 0.026854219948849106, 0.07289002557544758, 0.020460358056265986, 0.01918158567774936, 0.01918158567774936, 0.01918158567774936, 0.017902813299232736, 0.907928388746803, 0.9156010230179028, 0.928388746803069, 0.9181585677749361, 0.9117647058823529, 0.8976982097186701, 0.017902813299232736, 0.03324808184143223, 0.9462915601023018, 0.03324808184143223, 0.03580562659846547, 0.03324808184143223, 0.04219948849104859, 0.04092071611253197, 0.05115089514066496, 0.9424552429667519, 0.06010230179028133, 0.06265984654731457, 0.0639386189258312, 0.07161125319693094, 0.07672634271099744, 0.11892583120204604, 0.08951406649616368, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.09207161125319693, 0.09462915601023018, 0.9245524296675192, 0.11636828644501279, 0.12020460358056266, 0.13171355498721227, 0.11253196930946291, 0.11764705882352941, 0.11636828644501279, 0.12148337595907928, 0.14194373401534527, 0.1547314578005115, 0.19053708439897699, 0.2340153452685422, 0.3695652173913043, 0.717391304347826], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/E3_binding.gap.json b/pfam_gap_rates/E3_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0240a653188687ab8af1b35b1ceb00919ebfa369
--- /dev/null
+++ b/pfam_gap_rates/E3_binding.gap.json
@@ -0,0 +1 @@
+{"family": "E3_binding", "n_seqs": 3980, "length": 37, "gap_rates": [0.5773869346733669, 0.2974874371859296, 0.11507537688442211, 0.06432160804020101, 0.017839195979899497, 0.009045226130653266, 0.006030150753768844, 0.005025125628140704, 0.004522613065326633, 0.003015075376884422, 0.003015075376884422, 0.002763819095477387, 0.0022613065326633165, 0.0017587939698492463, 0.0010050251256281408, 0.0005025125628140704, 0.9454773869346733, 0.0022613065326633165, 0.002512562814070352, 0.001507537688442211, 0.0007537688442211055, 0.0007537688442211055, 0.004271356783919598, 0.007537688442211055, 0.007788944723618091, 0.006532663316582915, 0.004271356783919598, 0.0037688442211055275, 0.005025125628140704, 0.004271356783919598, 0.004773869346733669, 0.005527638190954774, 0.006030150753768844, 0.006030150753768844, 0.008040201005025126, 0.03291457286432161, 0.31683417085427135], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EAL.gap.json b/pfam_gap_rates/EAL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d9a2f61a1decdf3ed11bd0327679c9499c5cb66
--- /dev/null
+++ b/pfam_gap_rates/EAL.gap.json
@@ -0,0 +1 @@
+{"family": "EAL", "n_seqs": 5000, "length": 243, "gap_rates": [0.632, 0.3612, 0.2416, 0.2128, 0.1918, 0.1816, 0.1676, 0.159, 0.1464, 0.1322, 0.114, 0.1004, 0.0938, 0.0882, 0.0862, 0.0846, 0.0814, 0.0808, 0.0802, 0.0796, 0.1576, 0.0918, 0.0796, 0.0788, 0.0786, 0.0778, 0.0826, 0.0798, 0.0762, 0.0762, 0.076, 0.0758, 0.0758, 0.0754, 0.075, 0.0756, 0.08, 0.0772, 0.0806, 0.0948, 0.087, 0.159, 0.139, 0.119, 0.1, 0.0858, 0.0806, 0.0778, 0.0768, 0.0766, 0.0748, 0.074, 0.0736, 0.0734, 0.0738, 0.1084, 0.0862, 0.085, 0.0814, 0.0794, 0.0768, 0.0732, 0.0712, 0.0696, 0.0682, 0.0658, 0.0656, 0.0654, 0.0652, 0.0648, 0.07, 0.0678, 0.0882, 0.08, 0.0808, 0.0842, 0.1338, 0.3052, 0.6062, 0.4848, 0.5784, 0.6886, 0.483, 0.105, 0.0824, 0.066, 0.0632, 0.0616, 0.0556, 0.9162, 0.0532, 0.053, 0.0524, 0.0526, 0.054, 0.054, 0.0544, 0.053, 0.0526, 0.0592, 0.0544, 0.0572, 0.073, 0.9288, 0.0566, 0.0558, 0.0542, 0.0514, 0.0488, 0.054, 0.106, 0.0976, 0.0914, 0.9344, 0.1162, 0.0706, 0.054, 0.0484, 0.0378, 0.036, 0.0312, 0.0318, 0.0848, 0.0312, 0.0296, 0.0288, 0.029, 0.0292, 0.0292, 0.0292, 0.0294, 0.128, 0.1118, 0.1048, 0.0886, 0.0628, 0.0364, 0.0326, 0.0316, 0.0324, 0.0654, 0.9112, 0.867, 0.035, 0.0306, 0.0292, 0.0284, 0.029, 0.0302, 0.0292, 0.0286, 0.0292, 0.0276, 0.0274, 0.0266, 0.026, 0.026, 0.0262, 0.0266, 0.0266, 0.026, 0.0354, 0.0322, 0.038, 0.031, 0.0282, 0.0286, 0.0274, 0.0272, 0.0268, 0.0266, 0.0272, 0.0298, 0.035, 0.043, 0.028, 0.0274, 0.027, 0.0264, 0.0266, 0.0266, 0.0274, 0.0296, 0.031, 0.029, 0.0284, 0.0362, 0.0568, 0.0716, 0.0898, 0.1584, 0.071, 0.0632, 0.0516, 0.0446, 0.0362, 0.0322, 0.0308, 0.032, 0.0302, 0.0304, 0.029, 0.028, 0.0276, 0.0276, 0.0272, 0.0264, 0.0264, 0.0322, 0.0254, 0.0238, 0.023, 0.0222, 0.022, 0.022, 0.0228, 0.0224, 0.023, 0.023, 0.023, 0.0234, 0.0244, 0.0244, 0.0244, 0.0244, 0.0246, 0.025, 0.0254, 0.0254, 0.0262, 0.0272, 0.0272, 0.028, 0.028, 0.0284, 0.029, 0.0306, 0.0328, 0.0368, 0.0402, 0.0528, 0.08, 0.1732], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EAP30.gap.json b/pfam_gap_rates/EAP30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e3a3d385db0c95e8e1e86c5246dc430cf2b0cf6
--- /dev/null
+++ b/pfam_gap_rates/EAP30.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ECF-ribofla_trS.gap.json b/pfam_gap_rates/ECF-ribofla_trS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21b6862d3ff0c941ece8ed6c8dc7ff15effb3671
--- /dev/null
+++ b/pfam_gap_rates/ECF-ribofla_trS.gap.json
@@ -0,0 +1 @@
+{"family": "ECF-ribofla_trS", "n_seqs": 869, "length": 187, "gap_rates": [0.8826237054085155, 0.6156501726121979, 0.3049482163406214, 0.18181818181818182, 0.14154200230149597, 0.10356731875719218, 0.07479861910241657, 0.06904487917146145, 0.06214039125431531, 0.05983889528193326, 0.06214039125431531, 0.05753739930955121, 0.05293440736478711, 0.04487917146144994, 0.04027617951668585, 0.04142692750287687, 0.039125431530494824, 0.04142692750287687, 0.039125431530494824, 0.04257767548906789, 0.039125431530494824, 0.047180667433831994, 0.9413118527042578, 0.17491369390103567, 0.9171461449942463, 0.04372842347525892, 0.04027617951668585, 0.031070195627157654, 0.03567318757192175, 0.06214039125431531, 0.0667433831990794, 0.7192174913693901, 0.5592635212888377, 0.3440736478711162, 0.3084004602991945, 0.3751438434982739, 0.333716915995397, 0.85385500575374, 0.0667433831990794, 0.04027617951668585, 0.020713463751438434, 0.020713463751438434, 0.020713463751438434, 0.020713463751438434, 0.019562715765247412, 0.01726121979286536, 0.01726121979286536, 0.01611047180667434, 0.01611047180667434, 0.01611047180667434, 0.01726121979286536, 0.01726121979286536, 0.01726121979286536, 0.01611047180667434, 0.014959723820483314, 0.01726121979286536, 0.01611047180667434, 0.020713463751438434, 0.018411967779056387, 0.014959723820483314, 0.012658227848101266, 0.01380897583429229, 0.01611047180667434, 0.01380897583429229, 0.01380897583429229, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.010356731875719217, 0.011507479861910242, 0.011507479861910242, 0.011507479861910242, 0.11047180667433831, 0.020713463751438434, 0.07249712313003452, 0.8941311852704258, 0.01380897583429229, 0.012658227848101266, 0.859608745684695, 0.011507479861910242, 0.011507479861910242, 0.010356731875719217, 0.009205983889528193, 0.018411967779056387, 0.20138089758342922, 0.01611047180667434, 0.012658227848101266, 0.011507479861910242, 0.009205983889528193, 0.009205983889528193, 0.009205983889528193, 0.00805523590333717, 0.010356731875719217, 0.011507479861910242, 0.00805523590333717, 0.011507479861910242, 0.011507479861910242, 0.010356731875719217, 0.009205983889528193, 0.00805523590333717, 0.00805523590333717, 0.010356731875719217, 0.01380897583429229, 0.35097813578826237, 0.32681242807825084, 0.11162255466052934, 0.1047180667433832, 0.16915995397008055, 0.9125431530494822, 0.9424626006904487, 0.9378596087456847, 0.8515535097813579, 0.40736478711162255, 0.33141542002301494, 0.2669735327963176, 0.19907940161104717, 0.12888377445339472, 0.0805523590333717, 0.10356731875719218, 0.08860759493670886, 0.9286536248561565, 0.04142692750287687, 0.03682393555811277, 0.0333716915995397, 0.03682393555811277, 0.03567318757192175, 0.03682393555811277, 0.039125431530494824, 0.0379746835443038, 0.039125431530494824, 0.0379746835443038, 0.047180667433831994, 0.04372842347525892, 0.047180667433831994, 0.04833141542002301, 0.05063291139240506, 0.05178365937859609, 0.05408515535097814, 0.05753739930955121, 0.05983889528193326, 0.8642117376294591, 0.6593785960874569, 0.5788262370540852, 0.5373993095512083, 0.525891829689298, 0.48216340621403914, 0.4660529344073648, 0.4626006904487917, 0.45454545454545453, 0.4476409666283084, 0.9113924050632911, 0.8918296892980437, 0.42577675489067895, 0.22554660529344073, 0.1047180667433832, 0.10126582278481013, 0.09896432681242807, 0.10126582278481013, 0.10701956271576525, 0.1047180667433832, 0.10817031070195628, 0.10701956271576525, 0.10701956271576525, 0.10817031070195628, 0.10817031070195628, 0.11047180667433831, 0.11622554660529344, 0.11852704257767549, 0.12197928653624857, 0.12658227848101267, 0.12888377445339472, 0.13118527042577677, 0.13578826237054084, 0.1380897583429229, 0.14154200230149597, 0.14844649021864212, 0.15304948216340622, 0.15765247410817032, 0.16915995397008055, 0.1852704257767549, 0.19792865362485615, 0.22669735327963175, 0.2957422324510932, 0.32796317606444186, 0.3751438434982739, 0.48791714614499426, 0.7686996547756041], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF-hand_2.gap.json b/pfam_gap_rates/EF-hand_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06461ee53f0ab46bec65be56cdddbfd46781b703
--- /dev/null
+++ b/pfam_gap_rates/EF-hand_2.gap.json
@@ -0,0 +1 @@
+{"family": "EF-hand_2", "n_seqs": 248, "length": 127, "gap_rates": [0.33064516129032256, 0.25, 0.24193548387096775, 0.22983870967741934, 0.21774193548387097, 0.2056451612903226, 0.7016129032258065, 0.6895161290322581, 0.13709677419354838, 0.11693548387096774, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.09274193548387097, 0.09274193548387097, 0.09274193548387097, 0.09274193548387097, 0.09274193548387097, 0.08870967741935484, 0.07661290322580645, 0.07661290322580645, 0.07661290322580645, 0.07661290322580645, 0.06048387096774194, 0.056451612903225805, 0.056451612903225805, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.056451612903225805, 0.056451612903225805, 0.06451612903225806, 0.05241935483870968, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04838709677419355, 0.04838709677419355, 0.05241935483870968, 0.9435483870967742, 0.5080645161290323, 0.31451612903225806, 0.06451612903225806, 0.05241935483870968, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04032258064516129, 0.04435483870967742, 0.04435483870967742, 0.14516129032258066, 0.1532258064516129, 0.9435483870967742, 0.9435483870967742, 0.14919354838709678, 0.14516129032258066, 0.0846774193548387, 0.10483870967741936, 0.11290322580645161, 0.39919354838709675, 0.3588709677419355, 0.0846774193548387, 0.07258064516129033, 0.0846774193548387, 0.07661290322580645, 0.06048387096774194, 0.04435483870967742, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.036290322580645164, 0.036290322580645164, 0.04032258064516129, 0.036290322580645164, 0.036290322580645164, 0.036290322580645164, 0.036290322580645164, 0.036290322580645164, 0.036290322580645164, 0.04032258064516129, 0.04435483870967742, 0.06451612903225806, 0.07661290322580645, 0.07258064516129033, 0.07258064516129033, 0.0846774193548387, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.09274193548387097, 0.0967741935483871, 0.10080645161290322, 0.14516129032258066], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF-hand_3.gap.json b/pfam_gap_rates/EF-hand_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4140dce826ad1dbd2d93f5e0d4f5d27a93ad4d32
--- /dev/null
+++ b/pfam_gap_rates/EF-hand_3.gap.json
@@ -0,0 +1 @@
+{"family": "EF-hand_3", "n_seqs": 234, "length": 104, "gap_rates": [0.3076923076923077, 0.1623931623931624, 0.12393162393162394, 0.10683760683760683, 0.09829059829059829, 0.09829059829059829, 0.08974358974358974, 0.0641025641025641, 0.06837606837606838, 0.0641025641025641, 0.05982905982905983, 0.04700854700854701, 0.9487179487179487, 0.04700854700854701, 0.042735042735042736, 0.07692307692307693, 0.042735042735042736, 0.038461538461538464, 0.05555555555555555, 0.038461538461538464, 0.038461538461538464, 0.03418803418803419, 0.03418803418803419, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.038461538461538464, 0.042735042735042736, 0.042735042735042736, 0.45726495726495725, 0.4358974358974359, 0.038461538461538464, 0.042735042735042736, 0.038461538461538464, 0.03418803418803419, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.03418803418803419, 0.042735042735042736, 0.038461538461538464, 0.36752136752136755, 0.44017094017094016, 0.9017094017094017, 0.9145299145299145, 0.9230769230769231, 0.9358974358974359, 0.9444444444444444, 0.9316239316239316, 0.9188034188034188, 0.9145299145299145, 0.8589743589743589, 0.36752136752136755, 0.042735042735042736, 0.042735042735042736, 0.038461538461538464, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.6752136752136753, 0.6666666666666666, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.038461538461538464, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.05128205128205128, 0.2948717948717949], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF-hand_8.gap.json b/pfam_gap_rates/EF-hand_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..adfe9152b7afa44003b3d9258b1c1bd331a4ce05
--- /dev/null
+++ b/pfam_gap_rates/EF-hand_8.gap.json
@@ -0,0 +1 @@
+{"family": "EF-hand_8", "n_seqs": 4762, "length": 59, "gap_rates": [0.880302393952121, 0.46829063418731626, 0.38051238975220497, 0.3401931961360773, 0.2866442671146577, 0.2790844183116338, 0.26942461150776986, 0.25577488450230995, 0.24170516589668206, 0.23351532969340613, 0.22994540109197817, 0.2253254934901302, 0.25850482990340196, 0.24674506509869804, 0.7391852162956741, 0.27992440151196973, 0.2971440571188576, 0.375052498950021, 0.23309533809323812, 0.26606467870642586, 0.25577488450230995, 0.7190256194876102, 0.8611927761444771, 0.9214615707685846, 0.887022259554809, 0.8229735405291894, 0.15602687946241076, 0.14090718185636286, 0.11444771104577908, 0.10037799244015119, 0.08588828223435531, 0.9065518689626207, 0.05984880302393952, 0.04724905501889962, 0.03611927761444771, 0.022259554808903823, 0.007559848803023939, 0.00629987400251995, 0.00629987400251995, 0.00629987400251995, 0.009659806803863923, 0.007349853002939942, 0.007979840403191937, 0.009029819403611928, 0.008189836203275935, 0.008189836203275935, 0.009869802603947922, 0.009869802603947922, 0.013019739605207897, 0.018269634607307853, 0.024569508609827803, 0.030449391012179756, 0.04892902141957161, 0.09155816883662327, 0.19466610667786644, 0.29672406551868963, 0.37778244435111297, 0.5797984040319194, 0.7606047879042419], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF_TS.gap.json b/pfam_gap_rates/EF_TS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65beaefd4528a894fb897b5d0d6419e93ddc2828
--- /dev/null
+++ b/pfam_gap_rates/EF_TS.gap.json
@@ -0,0 +1 @@
+{"family": "EF_TS", "n_seqs": 2607, "length": 247, "gap_rates": [0.3674721902570004, 0.27196010740314536, 0.25124664365170696, 0.24664365170694286, 0.24626006904487918, 0.24510932105868816, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24472573839662448, 0.24510932105868816, 0.24549290372075183, 0.24510932105868816, 0.24549290372075183, 0.25009589566551593, 0.2539317222861527, 0.25469888761028003, 0.25469888761028003, 0.2554660529344074, 0.9424626006904487, 0.3475258918296893, 0.3126198695818949, 0.2757959340237821, 0.27349443805140006, 0.27234369006520903, 0.26889144610663596, 0.26620636747219023, 0.25316455696202533, 0.9313387034906022, 0.931722286152666, 0.9336401994629843, 0.935174530111239, 0.9386267740698121, 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\ No newline at end of file
diff --git a/pfam_gap_rates/EF_assoc_1.gap.json b/pfam_gap_rates/EF_assoc_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9194e39794bdae050d3bd895ecf385b8b1ec6227
--- /dev/null
+++ b/pfam_gap_rates/EF_assoc_1.gap.json
@@ -0,0 +1 @@
+{"family": "EF_assoc_1", "n_seqs": 307, "length": 86, "gap_rates": [0.19218241042345277, 0.4169381107491857, 0.18892508143322476, 0.1465798045602606, 0.12052117263843648, 0.10423452768729642, 0.10097719869706841, 0.09446254071661238, 0.06840390879478828, 0.05863192182410423, 0.05211726384364821, 0.05537459283387622, 0.04560260586319218, 0.03908794788273615, 0.026058631921824105, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.019543973941368076, 0.013029315960912053, 0.016286644951140065, 0.016286644951140065, 0.013029315960912053, 0.013029315960912053, 0.009771986970684038, 0.009771986970684038, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.016286644951140065, 0.019543973941368076, 0.9478827361563518, 0.9283387622149837, 0.32247557003257327, 0.504885993485342, 0.9446254071661238, 0.9478827361563518, 0.9478827361563518, 0.9478827361563518, 0.9446254071661238, 0.42671009771986973, 0.5504885993485342, 0.511400651465798, 0.3713355048859935, 0.9185667752442996, 0.9478827361563518, 0.9315960912052117, 0.749185667752443, 0.18892508143322476, 0.05537459283387622, 0.05211726384364821, 0.6840390879478827, 0.05211726384364821, 0.05211726384364821, 0.05211726384364821, 0.05211726384364821, 0.05211726384364821, 0.05211726384364821, 0.05537459283387622, 0.06188925081433225, 0.06840390879478828, 0.06840390879478828, 0.06840390879478828, 0.06840390879478828, 0.0781758957654723, 0.09446254071661238, 0.13029315960912052, 0.20195439739413681, 0.6807817589576547], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EGF_2.gap.json b/pfam_gap_rates/EGF_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c16cad67ad3e851a42167b1146a10effb87a9966
--- /dev/null
+++ b/pfam_gap_rates/EGF_2.gap.json
@@ -0,0 +1 @@
+{"family": "EGF_2", "n_seqs": 1420, "length": 35, "gap_rates": [0.3795774647887324, 0.39154929577464787, 0.428169014084507, 0.44929577464788734, 0.9126760563380282, 0.7661971830985915, 0.4753521126760563, 0.3528169014084507, 0.2471830985915493, 0.004225352112676056, 0.004225352112676056, 0.0028169014084507044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5316901408450704, 0.48450704225352115, 0.013380281690140845, 0.1795774647887324, 0.9457746478873239, 0.006338028169014085, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0007042253521126761, 0.0007042253521126761, 0.0028169014084507044, 0.009154929577464789, 0.011971830985915493, 0.023943661971830985, 0.023943661971830985], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EIIA-man.gap.json b/pfam_gap_rates/EIIA-man.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7270bc9e74457fb774f6a05455575d95a09104a0
--- /dev/null
+++ b/pfam_gap_rates/EIIA-man.gap.json
@@ -0,0 +1 @@
+{"family": "EIIA-man", "n_seqs": 1655, "length": 121, "gap_rates": [0.4096676737160121, 0.09728096676737161, 0.036858006042296075, 0.027794561933534745, 0.023564954682779457, 0.022960725075528703, 0.022356495468277945, 0.022356495468277945, 0.691238670694864, 0.02175226586102719, 0.017522658610271902, 0.016918429003021148, 0.01570996978851964, 0.01570996978851964, 0.015105740181268883, 0.013897280966767372, 0.013293051359516616, 0.013293051359516616, 0.012688821752265862, 0.012084592145015106, 0.010876132930513595, 0.009667673716012085, 0.00906344410876133, 0.00906344410876133, 0.009667673716012085, 0.5770392749244713, 0.2634441087613293, 0.25317220543806646, 0.013293051359516616, 0.012688821752265862, 0.013293051359516616, 0.00785498489425982, 0.0072507552870090634, 0.006042296072507553, 0.00785498489425982, 0.006646525679758308, 0.012084592145015106, 0.008459214501510574, 0.013293051359516616, 0.015105740181268883, 0.019939577039274924, 0.014501510574018127, 0.016314199395770394, 0.00785498489425982, 0.0072507552870090634, 0.0072507552870090634, 0.004229607250755287, 0.0018126888217522659, 0.002416918429003021, 0.0018126888217522659, 0.0018126888217522659, 0.0018126888217522659, 0.9323262839879154, 0.03202416918429003, 0.03262839879154079, 0.03323262839879154, 0.08700906344410876, 0.1268882175226586, 0.02054380664652568, 0.0036253776435045317, 0.0018126888217522659, 0.0018126888217522659, 0.002416918429003021, 0.0018126888217522659, 0.0012084592145015106, 0.0012084592145015106, 0.0012084592145015106, 0.0012084592145015106, 0.0012084592145015106, 0.0018126888217522659, 0.002416918429003021, 0.009667673716012085, 0.016918429003021148, 0.01933534743202417, 0.023564954682779457, 0.025377643504531724, 0.02416918429003021, 0.027794561933534745, 0.03081570996978852, 0.03323262839879154, 0.030211480362537766, 0.035045317220543805, 0.03323262839879154, 0.033836858006042296, 0.25740181268882173, 0.10876132930513595, 0.9335347432024169, 0.8283987915407856, 0.26042296072507554, 0.1673716012084592, 0.04954682779456193, 0.04108761329305136, 0.03867069486404834, 0.03746223564954683, 0.03867069486404834, 0.03867069486404834, 0.03987915407854985, 0.04108761329305136, 0.04169184290030212, 0.042900302114803626, 0.044108761329305135, 0.04471299093655589, 0.047129909365558914, 0.0513595166163142, 0.06102719033232629, 0.10030211480362537, 0.10574018126888217, 0.9407854984894259, 0.7631419939577039, 0.18187311178247734, 0.21812688821752266, 0.2537764350453172, 0.2767371601208459, 0.30513595166163143, 0.3268882175226586, 0.3468277945619335, 0.3848942598187311, 0.4253776435045317, 0.4882175226586103, 0.6072507552870091, 0.7419939577039275], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EIIBC-GUT_N.gap.json b/pfam_gap_rates/EIIBC-GUT_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6401052db553e46ec5cb04b06845f83c2aa6249
--- /dev/null
+++ b/pfam_gap_rates/EIIBC-GUT_N.gap.json
@@ -0,0 +1 @@
+{"family": "EIIBC-GUT_N", "n_seqs": 122, "length": 207, "gap_rates": [0.4344262295081967, 0.09016393442622951, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.13114754098360656, 0.05737704918032787, 0.05737704918032787, 0.07377049180327869, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.04918032786885246, 0.04918032786885246, 0.8032786885245902, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.9180327868852459, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.03278688524590164, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.05737704918032787, 0.07377049180327869, 0.8524590163934426, 0.8688524590163934, 0.8770491803278688, 0.8934426229508197, 0.9016393442622951, 0.9262295081967213, 0.9426229508196722, 0.9262295081967213, 0.9016393442622951, 0.8852459016393442, 0.8688524590163934, 0.860655737704918, 0.8524590163934426, 0.13934426229508196, 0.1557377049180328, 0.1721311475409836, 0.16393442622950818, 0.1557377049180328, 0.14754098360655737, 0.13934426229508196, 0.16393442622950818, 0.16393442622950818, 0.1721311475409836, 0.1557377049180328, 0.14754098360655737, 0.1557377049180328, 0.1721311475409836, 0.1885245901639344, 0.18032786885245902, 0.22131147540983606, 0.2540983606557377, 0.2459016393442623, 0.2540983606557377, 0.21311475409836064, 0.8278688524590164, 0.8688524590163934, 0.9262295081967213, 0.9426229508196722, 0.9344262295081968, 0.9098360655737705, 0.8442622950819673, 0.819672131147541, 0.20491803278688525, 0.13934426229508196, 0.13114754098360656, 0.12295081967213115, 0.12295081967213115, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.09836065573770492, 0.12295081967213115, 0.11475409836065574, 0.12295081967213115, 0.12295081967213115, 0.13114754098360656, 0.29508196721311475, 0.29508196721311475, 0.4672131147540984, 0.4426229508196721, 0.3524590163934426, 0.09836065573770492, 0.09836065573770492, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09016393442622951, 0.09836065573770492, 0.09836065573770492, 0.09836065573770492, 0.09836065573770492, 0.09836065573770492, 0.09836065573770492, 0.12295081967213115], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EKR.gap.json b/pfam_gap_rates/EKR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c41f328dd4b3dd202837fa3bfb11f6c28c56856d
--- /dev/null
+++ b/pfam_gap_rates/EKR.gap.json
@@ -0,0 +1 @@
+{"family": "EKR", "n_seqs": 825, "length": 60, "gap_rates": [0.8181818181818182, 0.6666666666666666, 0.5612121212121212, 0.45575757575757575, 0.3842424242424242, 0.3393939393939394, 0.24606060606060606, 0.13090909090909092, 0.10787878787878788, 0.07636363636363637, 0.05696969696969697, 0.037575757575757575, 0.9381818181818182, 0.9418181818181818, 0.9357575757575758, 0.02909090909090909, 0.02909090909090909, 0.02181818181818182, 0.01818181818181818, 0.01818181818181818, 0.01090909090909091, 0.006060606060606061, 0.0048484848484848485, 0.0036363636363636364, 0.0036363636363636364, 0.0012121212121212121, 0.0012121212121212121, 0.0012121212121212121, 0.0012121212121212121, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9139393939393939, 0.9054545454545454, 0.3842424242424242, 0.3842424242424242, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006060606060606061, 0.009696969696969697, 0.020606060606060607, 0.12242424242424242], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ELP6.gap.json b/pfam_gap_rates/ELP6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57464512e833c56854ddba7dd6853a577299e196
--- /dev/null
+++ b/pfam_gap_rates/ELP6.gap.json
@@ -0,0 +1 @@
+{"family": "ELP6", "n_seqs": 171, "length": 273, "gap_rates": [0.8771929824561403, 0.8596491228070176, 0.8421052631578947, 0.8187134502923976, 0.8011695906432749, 0.7953216374269005, 0.7894736842105263, 0.7777777777777778, 0.7660818713450293, 0.7485380116959064, 0.7368421052631579, 0.7251461988304093, 0.6900584795321637, 0.6608187134502924, 0.6140350877192983, 0.5614035087719298, 0.5087719298245614, 0.47368421052631576, 0.4327485380116959, 0.4269005847953216, 0.39766081871345027, 0.3742690058479532, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.5730994152046783, 0.3508771929824561, 0.3508771929824561, 0.3508771929824561, 0.3508771929824561, 0.3508771929824561, 0.3508771929824561, 0.34502923976608185, 0.34502923976608185, 0.34502923976608185, 0.34502923976608185, 0.34502923976608185, 0.34502923976608185, 0.34502923976608185, 0.34502923976608185, 0.34502923976608185, 0.3391812865497076, 0.3391812865497076, 0.32748538011695905, 0.9473684210526315, 0.30409356725146197, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ENTH.gap.json b/pfam_gap_rates/ENTH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e4510064673e07e836d325af21297d7d401f77b
--- /dev/null
+++ b/pfam_gap_rates/ENTH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EPSP_synthase.gap.json b/pfam_gap_rates/EPSP_synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66bb6fc60c7861dd7832671595e1094c291b2072
--- /dev/null
+++ b/pfam_gap_rates/EPSP_synthase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ESCRT-II.gap.json b/pfam_gap_rates/ESCRT-II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bac92860f32a601ca97baa6050f195ae4a088a5
--- /dev/null
+++ b/pfam_gap_rates/ESCRT-II.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EcsC.gap.json b/pfam_gap_rates/EcsC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41d6ceaa543bc665e70206566a3635a6bab9f7e5
--- /dev/null
+++ b/pfam_gap_rates/EcsC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Elf1.gap.json b/pfam_gap_rates/Elf1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b3a9602263c665bb72d72841aa82e0f44cc951a
--- /dev/null
+++ b/pfam_gap_rates/Elf1.gap.json
@@ -0,0 +1 @@
+{"family": "Elf1", "n_seqs": 381, "length": 82, "gap_rates": [0.18110236220472442, 0.12598425196850394, 0.10236220472440945, 0.09448818897637795, 0.10236220472440945, 0.931758530183727, 0.7821522309711286, 0.09186351706036745, 0.08923884514435695, 0.14435695538057744, 0.1784776902887139, 0.10498687664041995, 0.07611548556430446, 0.07349081364829396, 0.07349081364829396, 0.07349081364829396, 0.07349081364829396, 0.047244094488188976, 0.049868766404199474, 0.8398950131233596, 0.03674540682414698, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.028871391076115485, 0.09448818897637795, 0.031496062992125984, 0.03412073490813648, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.023622047244094488, 0.01837270341207349, 0.028871391076115485, 0.028871391076115485, 0.028871391076115485, 0.028871391076115485, 0.94750656167979, 0.02099737532808399, 0.02099737532808399, 0.02099737532808399, 0.01837270341207349, 0.02099737532808399, 0.026246719160104987, 0.026246719160104987, 0.026246719160104987, 0.026246719160104987, 0.026246719160104987, 0.023622047244094488, 0.023622047244094488, 0.02099737532808399, 0.023622047244094488, 0.026246719160104987, 0.026246719160104987, 0.028871391076115485, 0.028871391076115485, 0.03412073490813648, 0.03674540682414698, 0.04461942257217848, 0.05511811023622047, 0.05774278215223097, 0.05774278215223097, 0.06036745406824147, 0.05774278215223097, 0.05774278215223097, 0.06036745406824147, 0.06036745406824147, 0.06036745406824147, 0.06299212598425197, 0.06299212598425197, 0.06561679790026247, 0.07086614173228346, 0.16535433070866143, 0.8110236220472441], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Endonuclease_NS.gap.json b/pfam_gap_rates/Endonuclease_NS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a389ea58eb01b06451f91c0b9e761299c6984ba
--- /dev/null
+++ b/pfam_gap_rates/Endonuclease_NS.gap.json
@@ -0,0 +1 @@
+{"family": "Endonuclease_NS", "n_seqs": 1091, "length": 301, "gap_rates": [0.8918423464711274, 0.8148487626031164, 0.766269477543538, 0.7250229147571036, 0.7057745187901008, 0.6828597616865261, 0.6562786434463794, 0.6241979835013749, 0.5985334555453712, 0.5737855178735105, 0.5490375802016498, 0.6223648029330889, 0.5591200733272227, 0.42529789184234645, 0.3996333638863428, 0.5462878093492209, 0.3354720439963336, 0.2923923006416132, 0.21081576535288726, 0.19615032080659944, 0.18056828597616864, 0.1604032997250229, 0.14940421631530706, 0.1466544454628781, 0.1457378551787351, 0.14298808432630614, 0.14207149404216315, 0.14023831347387716, 0.14023831347387716, 0.13748854262144822, 0.14390467461044912, 0.13657195233730524, 0.13473877176901924, 0.13198900091659027, 0.13198900091659027, 0.12923923006416133, 0.12923923006416133, 0.12923923006416133, 0.1310724106324473, 0.12740604949587533, 0.12648945921173235, 0.12648945921173235, 0.13382218148487626, 0.13382218148487626, 0.13382218148487626, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Eno-Rase_NADH_b.gap.json b/pfam_gap_rates/Eno-Rase_NADH_b.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c75350d86e2bbcd7dd03f1b6f1d21e14cb7bf4b
--- /dev/null
+++ b/pfam_gap_rates/Eno-Rase_NADH_b.gap.json
@@ -0,0 +1 @@
+{"family": "Eno-Rase_NADH_b", "n_seqs": 231, "length": 83, "gap_rates": [0.1471861471861472, 0.05194805194805195, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.021645021645021644, 0.021645021645021644, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.008658008658008658, 0.0, 0.0, 0.33766233766233766, 0.9134199134199135, 0.9437229437229437, 0.9307359307359307, 0.8874458874458875, 0.025974025974025976, 0.008658008658008658, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004329004329004329, 0.012987012987012988, 0.025974025974025976, 0.025974025974025976, 0.1038961038961039, 0.5367965367965368], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Esterase_phd.gap.json b/pfam_gap_rates/Esterase_phd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2022441b5e54bc6c3b32833cc94913cecd82607a
--- /dev/null
+++ b/pfam_gap_rates/Esterase_phd.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Exonuc_VII_L.gap.json b/pfam_gap_rates/Exonuc_VII_L.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a90879a49d6e2e811794cdf446e72066f5b99706
--- /dev/null
+++ b/pfam_gap_rates/Exonuc_VII_L.gap.json
@@ -0,0 +1 @@
+{"family": "Exonuc_VII_L", "n_seqs": 2437, "length": 329, "gap_rates": [0.4050061551087403, 0.35576528518670497, 0.34058268362741073, 0.3352482560525236, 0.3180139515798112, 0.2950348789495281, 0.2860073861304883, 0.2835453426343865, 0.2835453426343865, 0.2831350020517029, 0.2831350020517029, 0.2831350020517029, 0.2823143208863357, 0.2823143208863357, 0.2810832991382848, 0.27944193680755025, 0.2790315962248666, 0.2790315962248666, 0.2790315962248666, 0.278621255642183, 0.278621255642183, 0.278621255642183, 0.278621255642183, 0.2782109150594994, 0.2782109150594994, 0.2782109150594994, 0.2782109150594994, 0.2782109150594994, 0.2778005744768158, 0.2778005744768158, 0.2778005744768158, 0.2778005744768158, 0.2778005744768158, 0.2769798933114485, 0.2769798933114485, 0.2769798933114485, 0.27739023389413214, 0.2769798933114485, 0.27739023389413214, 0.2782109150594994, 0.3758719737382027, 0.2860073861304883, 0.27739023389413214, 0.27739023389413214, 0.27739023389413214, 0.27739023389413214, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Exonuc_VII_S.gap.json b/pfam_gap_rates/Exonuc_VII_S.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6aee32ac7b87f60e0d30fca276b132cb95cf72b
--- /dev/null
+++ b/pfam_gap_rates/Exonuc_VII_S.gap.json
@@ -0,0 +1 @@
+{"family": "Exonuc_VII_S", "n_seqs": 1809, "length": 52, "gap_rates": [0.11387506909894969, 0.04975124378109453, 0.029850746268656716, 0.02211166390270868, 0.011608623548922056, 0.008844665561083471, 0.008844665561083471, 0.008844665561083471, 0.007739082365948038, 0.007739082365948038, 0.006633499170812604, 0.00552791597567717, 0.00552791597567717, 0.004422332780541736, 0.003316749585406302, 0.003316749585406302, 0.008291873963515755, 0.003316749585406302, 0.003316749585406302, 0.002763957987838585, 0.002211166390270868, 0.001658374792703151, 0.001105583195135434, 0.001105583195135434, 0.000552791597567717, 0.0, 0.0, 0.0, 0.0, 0.000552791597567717, 0.000552791597567717, 0.001105583195135434, 0.001105583195135434, 0.001105583195135434, 0.002211166390270868, 0.003869541182974019, 0.006633499170812604, 0.006633499170812604, 0.006633499170812604, 0.007186290768380321, 0.007186290768380321, 0.007186290768380321, 0.007739082365948038, 0.008291873963515755, 0.009397457158651189, 0.013819789939192924, 0.01658374792703151, 0.01990049751243781, 0.026533996683250415, 0.04367053620784964, 0.22775013819789938, 0.677722498618021], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Exosortase_EpsH.gap.json b/pfam_gap_rates/Exosortase_EpsH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4ed899dbf56d40696914350183cf30537292b45
--- /dev/null
+++ b/pfam_gap_rates/Exosortase_EpsH.gap.json
@@ -0,0 +1 @@
+{"family": "Exosortase_EpsH", "n_seqs": 498, "length": 297, "gap_rates": [0.6485943775100401, 0.4939759036144578, 0.46184738955823296, 0.43775100401606426, 0.41767068273092367, 0.40562248995983935, 0.39357429718875503, 0.4036144578313253, 0.39156626506024095, 0.3855421686746988, 0.38353413654618473, 0.3815261044176707, 0.39156626506024095, 0.37349397590361444, 0.3755020080321285, 0.37751004016064255, 0.3674698795180723, 0.8654618473895582, 0.3493975903614458, 0.3493975903614458, 0.46987951807228917, 0.9096385542168675, 0.9377510040160643, 0.9457831325301205, 0.9437751004016064, 0.9236947791164659, 0.8694779116465864, 0.3514056224899598, 0.3353413654618474, 0.3313253012048193, 0.3253012048192771, 0.3232931726907631, 0.3152610441767068, 0.3092369477911647, 0.29116465863453816, 0.27710843373493976, 0.26706827309236947, 0.26104417670682734, 0.25903614457831325, 0.25502008032128515, 0.26104417670682734, 0.25100401606425704, 0.2429718875502008, 0.24497991967871485, 0.2429718875502008, 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\ No newline at end of file
diff --git a/pfam_gap_rates/F-box-like.gap.json b/pfam_gap_rates/F-box-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56ceec3230d7738649ae0fe8f9af87862a32f135
--- /dev/null
+++ b/pfam_gap_rates/F-box-like.gap.json
@@ -0,0 +1 @@
+{"family": "F-box-like", "n_seqs": 5000, "length": 77, "gap_rates": [0.7892, 0.4532, 0.2518, 0.1758, 0.1374, 0.0812, 0.0464, 0.026, 0.017, 0.0126, 0.0092, 0.0072, 0.0064, 0.845, 0.85, 0.8602, 0.8802, 0.902, 0.9258, 0.9394, 0.9486, 0.9448, 0.9332, 0.9146, 0.891, 0.868, 0.8528, 0.847, 0.8398, 0.0076, 0.0586, 0.9464, 0.0602, 0.8286, 0.0472, 0.0438, 0.0414, 0.892, 0.0126, 0.8726, 0.8908, 0.9118, 0.9338, 0.9426, 0.9222, 0.9002, 0.88, 0.8622, 0.0072, 0.0048, 0.003, 0.923, 0.002, 0.0008, 0.0004, 0.0, 0.0026, 0.0026, 0.003, 0.0014, 0.003, 0.0056, 0.0092, 0.0282, 0.1788, 0.1944, 0.1156, 0.531, 0.1438, 0.1506, 0.17, 0.1984, 0.2526, 0.3028, 0.433, 0.622, 0.9346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FA.gap.json b/pfam_gap_rates/FA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f566252191e32dcfe4eb0371afac6dbe8ccf8bc
--- /dev/null
+++ b/pfam_gap_rates/FA.gap.json
@@ -0,0 +1 @@
+{"family": "FA", "n_seqs": 438, "length": 45, "gap_rates": [0.5182648401826484, 0.11187214611872145, 0.045662100456621, 0.03424657534246575, 0.0228310502283105, 0.0182648401826484, 0.01598173515981735, 0.0136986301369863, 0.0136986301369863, 0.0091324200913242, 0.0, 0.0, 0.00228310502283105, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0684931506849315, 0.06621004566210045, 0.12557077625570776, 0.1324200913242009, 0.906392694063927, 0.0136986301369863, 0.0091324200913242, 0.01141552511415525, 0.0136986301369863, 0.0136986301369863, 0.01598173515981735, 0.0182648401826484, 0.0228310502283105, 0.0547945205479452, 0.11187214611872145, 0.13013698630136986, 0.17123287671232876, 0.2100456621004566, 0.2420091324200913, 0.2899543378995434, 0.4703196347031963, 0.636986301369863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FANCI_S4.gap.json b/pfam_gap_rates/FANCI_S4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ad48e6e3fbe46932f5fa4054f6f3f027b3d59d8
--- /dev/null
+++ b/pfam_gap_rates/FANCI_S4.gap.json
@@ -0,0 +1 @@
+{"family": "FANCI_S4", "n_seqs": 116, "length": 289, "gap_rates": [0.9224137931034483, 0.4482758620689655, 0.3706896551724138, 0.29310344827586204, 0.29310344827586204, 0.27586206896551724, 0.25862068965517243, 0.25862068965517243, 0.25, 0.25, 0.25862068965517243, 0.25, 0.2413793103448276, 0.23275862068965517, 0.20689655172413793, 0.20689655172413793, 0.1810344827586207, 0.1896551724137931, 0.19827586206896552, 0.4396551724137931, 0.8189655172413793, 0.8879310344827587, 0.9310344827586207, 0.9396551724137931, 0.896551724137931, 0.853448275862069, 0.8103448275862069, 0.1896551724137931, 0.19827586206896552, 0.20689655172413793, 0.19827586206896552, 0.15517241379310345, 0.9051724137931034, 0.9396551724137931, 0.8793103448275862, 0.14655172413793102, 0.14655172413793102, 0.14655172413793102, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FBD.gap.json b/pfam_gap_rates/FBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98e4b975c274ae3cc94e5c375fe464b4935c2dc3
--- /dev/null
+++ b/pfam_gap_rates/FBD.gap.json
@@ -0,0 +1 @@
+{"family": "FBD", "n_seqs": 1070, "length": 45, "gap_rates": [0.7906542056074767, 0.6018691588785047, 0.4794392523364486, 0.3719626168224299, 0.3074766355140187, 0.2560747663551402, 0.23551401869158878, 0.19906542056074766, 0.1588785046728972, 0.09813084112149532, 0.04392523364485981, 0.017757009345794394, 0.010280373831775701, 0.007476635514018692, 0.005607476635514018, 0.002803738317757009, 0.0009345794392523365, 0.014953271028037384, 0.010280373831775701, 0.011214953271028037, 0.008411214953271028, 0.007476635514018692, 0.003738317757009346, 0.004672897196261682, 0.002803738317757009, 0.002803738317757009, 0.002803738317757009, 0.002803738317757009, 0.004672897196261682, 0.004672897196261682, 0.0065420560747663555, 0.0065420560747663555, 0.0065420560747663555, 0.007476635514018692, 0.009345794392523364, 0.012149532710280374, 0.013084112149532711, 0.019626168224299065, 0.022429906542056073, 0.028037383177570093, 0.029906542056074768, 0.04579439252336449, 0.058878504672897194, 0.14018691588785046, 0.288785046728972], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FGF.gap.json b/pfam_gap_rates/FGF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83ccf6dd7d3f86ca4574e0fc921566130fdbfb0d
--- /dev/null
+++ b/pfam_gap_rates/FGF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FH2.gap.json b/pfam_gap_rates/FH2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5f1a0fb2f6572431e516dc4b8bbd49b931e5e02
--- /dev/null
+++ b/pfam_gap_rates/FH2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FMN_dh.gap.json b/pfam_gap_rates/FMN_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..353a26c9bc2a10f9bf9d0dc70fbad0ee48445120
--- /dev/null
+++ b/pfam_gap_rates/FMN_dh.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FNIP_N.gap.json b/pfam_gap_rates/FNIP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82475e727e5f9a82c0656dbd1f6f9887982e740d
--- /dev/null
+++ b/pfam_gap_rates/FNIP_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FPP.gap.json b/pfam_gap_rates/FPP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2a7208cc89f8b8de764ef4736c7225e9e8e77be
--- /dev/null
+++ b/pfam_gap_rates/FPP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FSH1.gap.json b/pfam_gap_rates/FSH1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4b35e3800a581312850f5cc731394ad2c8571c6
--- /dev/null
+++ b/pfam_gap_rates/FSH1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FTCD.gap.json b/pfam_gap_rates/FTCD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e19398246cd2f9ea57112a27ee7f4bbd8def7928
--- /dev/null
+++ b/pfam_gap_rates/FTCD.gap.json
@@ -0,0 +1 @@
+{"family": "FTCD", "n_seqs": 319, "length": 165, "gap_rates": [0.5391849529780565, 0.04075235109717868, 0.034482758620689655, 0.03134796238244514, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.1755485893416928, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.018808777429467086, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.012539184952978056, 0.0219435736677116, 0.07836990595611286, 0.4702194357366771, 0.6520376175548589, 0.658307210031348, 0.658307210031348, 0.6520376175548589, 0.6081504702194357, 0.8338557993730408, 0.8369905956112853, 0.8369905956112853, 0.8432601880877743, 0.8620689655172413, 0.8652037617554859, 0.8652037617554859, 0.8683385579937304, 0.8934169278996865, 0.8934169278996865, 0.890282131661442, 0.8652037617554859, 0.8652037617554859, 0.8652037617554859, 0.8589341692789969, 0.8401253918495298, 0.8369905956112853, 0.8338557993730408, 0.8275862068965517, 0.219435736677116, 0.03134796238244514, 0.03761755485893417, 0.03134796238244514, 0.02821316614420063, 0.025078369905956112, 0.018808777429467086, 0.0219435736677116, 0.0219435736677116, 0.01567398119122257, 0.018808777429467086, 0.018808777429467086, 0.01567398119122257, 0.025078369905956112, 0.02821316614420063, 0.07210031347962383, 0.06583072100313479, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.01567398119122257, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.018808777429467086, 0.0219435736677116, 0.0219435736677116, 0.0219435736677116, 0.018808777429467086, 0.01567398119122257, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.01567398119122257, 0.012539184952978056, 0.012539184952978056, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.018808777429467086, 0.025078369905956112, 0.034482758620689655, 0.0438871473354232, 0.0438871473354232, 0.047021943573667714, 0.05642633228840126, 0.05642633228840126, 0.06269592476489028, 0.06269592476489028, 0.07210031347962383, 0.09090909090909091, 0.13479623824451412, 0.1786833855799373, 0.2413793103448276, 0.5078369905956113, 0.5642633228840125, 0.6238244514106583, 0.8244514106583072, 0.6300940438871473, 0.6332288401253918, 0.6269592476489029, 0.6332288401253918, 0.6394984326018809, 0.6426332288401254, 0.6489028213166145, 0.6520376175548589, 0.658307210031348, 0.658307210031348, 0.664576802507837, 0.6739811912225705, 0.6802507836990596, 0.6833855799373041, 0.6833855799373041, 0.6833855799373041, 0.6833855799373041, 0.6833855799373041, 0.6865203761755486, 0.6927899686520376, 0.6927899686520376, 0.6927899686520376, 0.6927899686520376, 0.6927899686520376, 0.6927899686520376, 0.6927899686520376, 0.6959247648902821, 0.6959247648902821, 0.6959247648902821, 0.7147335423197492, 0.7304075235109718], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FUN14.gap.json b/pfam_gap_rates/FUN14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a385b66ad2729eab056edff9d0617e037c843e0
--- /dev/null
+++ b/pfam_gap_rates/FUN14.gap.json
@@ -0,0 +1 @@
+{"family": "FUN14", "n_seqs": 311, "length": 144, "gap_rates": [0.3247588424437299, 0.12540192926045016, 0.09003215434083602, 0.08681672025723473, 0.06752411575562701, 0.05144694533762058, 0.05144694533762058, 0.05144694533762058, 0.04180064308681672, 0.03536977491961415, 0.03215434083601286, 0.03215434083601286, 0.03215434083601286, 0.03215434083601286, 0.03215434083601286, 0.028938906752411574, 0.028938906752411574, 0.028938906752411574, 0.028938906752411574, 0.028938906752411574, 0.028938906752411574, 0.03215434083601286, 0.028938906752411574, 0.03215434083601286, 0.03215434083601286, 0.03215434083601286, 0.03536977491961415, 0.03536977491961415, 0.028938906752411574, 0.03215434083601286, 0.02572347266881029, 0.01929260450160772, 0.01929260450160772, 0.01607717041800643, 0.012861736334405145, 0.012861736334405145, 0.00964630225080386, 0.006430868167202572, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.01929260450160772, 0.01607717041800643, 0.01929260450160772, 0.01929260450160772, 0.8327974276527331, 0.8585209003215434, 0.864951768488746, 0.8906752411575563, 0.9163987138263665, 0.9228295819935691, 0.932475884244373, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9453376205787781, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9421221864951769, 0.9356913183279743, 0.9260450160771704, 0.9196141479099679, 0.9035369774919614, 0.8681672025723473, 0.8617363344051447, 0.8392282958199357, 0.8295819935691319, 0.07717041800643087, 0.2604501607717042, 0.2572347266881029, 0.2540192926045016, 0.2347266881028939, 0.24115755627009647, 0.24758842443729903, 0.2733118971061093, 0.2829581993569132, 0.2797427652733119, 0.2572347266881029, 0.20257234726688103, 0.21543408360128619, 0.21864951768488747, 0.08038585209003216, 0.3536977491961415, 0.43086816720257237, 0.48231511254019294, 0.5434083601286174, 0.7202572347266881, 0.8488745980707395, 0.9260450160771704, 0.8906752411575563, 0.8006430868167203, 0.5627009646302251, 0.5209003215434084, 0.4758842443729904, 0.39228295819935693, 0.3022508038585209, 0.08038585209003216, 0.08038585209003216, 0.08038585209003216, 0.08038585209003216, 0.08681672025723473, 0.0932475884244373, 0.0932475884244373, 0.0932475884244373, 0.0932475884244373, 0.09646302250803858, 0.09967845659163987, 0.09967845659163987, 0.09967845659163987, 0.10610932475884244, 0.1157556270096463, 0.12218649517684887, 0.12218649517684887, 0.12540192926045016, 0.13183279742765272, 0.26688102893890675, 0.39228295819935693], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FUSC_2.gap.json b/pfam_gap_rates/FUSC_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86a8806380080ce9a77c1d85b1543758007879aa
--- /dev/null
+++ b/pfam_gap_rates/FUSC_2.gap.json
@@ -0,0 +1 @@
+{"family": "FUSC_2", "n_seqs": 1505, "length": 162, "gap_rates": [0.9149501661129568, 0.6823920265780731, 0.5561461794019934, 0.40863787375415284, 0.3654485049833887, 0.33488372093023255, 0.2877076411960133, 0.1833887043189369, 0.14019933554817277, 0.1282392026578073, 0.08039867109634552, 0.9003322259136213, 0.9116279069767442, 0.8704318936877077, 0.03920265780730897, 0.029900332225913623, 0.023920265780730896, 0.022591362126245847, 0.016611295681063124, 0.011295681063122924, 0.008637873754152824, 0.007308970099667774, 0.005980066445182724, 0.005980066445182724, 0.005980066445182724, 0.005980066445182724, 0.0053156146179402, 0.005980066445182724, 0.0053156146179402, 0.0053156146179402, 0.9488372093023256, 0.8445182724252491, 0.004651162790697674, 0.004651162790697674, 0.003986710963455149, 0.0033222591362126247, 0.003986710963455149, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0026578073089701, 0.0026578073089701, 0.0026578073089701, 0.0026578073089701, 0.0033222591362126247, 0.0026578073089701, 0.0026578073089701, 0.0026578073089701, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.003986710963455149, 0.0033222591362126247, 0.0033222591362126247, 0.0026578073089701, 0.9176079734219269, 0.003986710963455149, 0.003986710963455149, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.007308970099667774, 0.8245847176079735, 0.9149501661129568, 0.9348837209302325, 0.8897009966777408, 0.3966777408637874, 0.007308970099667774, 0.009966777408637873, 0.007308970099667774, 0.013289036544850499, 0.9282392026578073, 0.9016611295681063, 0.009966777408637873, 0.0053156146179402, 0.0053156146179402, 0.009302325581395349, 0.011295681063122924, 0.007308970099667774, 0.935548172757475, 0.0053156146179402, 0.005980066445182724, 0.007308970099667774, 0.01727574750830565, 0.08305647840531562, 0.051827242524916946, 0.04451827242524917, 0.05514950166112957, 0.9249169435215947, 0.06312292358803986, 0.053156146179401995, 0.01727574750830565, 0.021926910299003323, 0.8259136212624585, 0.9289036544850499, 0.7906976744186046, 0.0212624584717608, 0.014617940199335547, 0.011960132890365448, 0.011960132890365448, 0.013289036544850499, 0.013953488372093023, 0.0212624584717608, 0.018604651162790697, 0.019269102990033222, 0.0212624584717608, 0.018604651162790697, 0.01727574750830565, 0.017940199335548173, 0.017940199335548173, 0.018604651162790697, 0.020598006644518274, 0.10232558139534884, 0.30697674418604654, 0.5475083056478405, 0.9242524916943522, 0.948172757475083, 0.9428571428571428, 0.9076411960132891, 0.6019933554817276, 0.5641196013289037, 0.16411960132890366, 0.10631229235880399, 0.09568106312292358, 0.10232558139534884, 0.12292358803986711, 0.06312292358803986, 0.812624584717608, 0.8338870431893688, 0.8531561461794019, 0.8717607973421927, 0.8996677740863788, 0.9196013289036545, 0.9096345514950166, 0.8803986710963455, 0.8651162790697674, 0.8451827242524917, 0.8186046511627907, 0.8046511627906977, 0.043853820598006646, 0.036544850498338874, 0.023920265780730896, 0.022591362126245847, 0.022591362126245847, 0.023920265780730896, 0.023920265780730896, 0.02458471760797342, 0.025913621262458473, 0.02524916943521595, 0.025913621262458473, 0.026578073089700997, 0.026578073089700997, 0.027906976744186046, 0.029900332225913623, 0.03388704318936877, 0.05647840531561462, 0.12491694352159469, 0.5348837209302325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fasciclin.gap.json b/pfam_gap_rates/Fasciclin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e91839d8bac9eecd760644f65ffdc150de16fcf
--- /dev/null
+++ b/pfam_gap_rates/Fasciclin.gap.json
@@ -0,0 +1 @@
+{"family": "Fasciclin", "n_seqs": 4103, "length": 171, "gap_rates": [0.9468681452595662, 0.46331952230075557, 0.30294906166219837, 0.24494272483548624, 0.21740190104801366, 0.1918108700950524, 0.18206190592249574, 0.17548135510601998, 0.16646356324640507, 0.16134535705581282, 0.15476480623933708, 0.149159151840117, 0.13672922252010725, 0.9125030465513039, 0.12503046551303923, 0.10504508895929808, 0.09773336582988057, 0.08871557397026567, 0.08408481598830124, 0.07238605898123325, 0.6331952230075555, 0.880331464781867, 0.9427248354862295, 0.9239580794540581, 0.8174506458688764, 0.09407750426517182, 0.0833536436753595, 0.1450158420667804, 0.04825737265415549, 0.030952961247867415, 0.026322203265902996, 0.024859858640019498, 0.02388496222276383, 0.02388496222276383, 0.023641238118449915, 0.02315378990982208, 0.022910065805508164, 0.022422617596880332, 0.02315378990982208, 0.023397514014136, 0.022910065805508164, 0.938581525712893, 0.06994881793809407, 0.07262978308554716, 0.06653668047769924, 0.9222520107238605, 0.9497928345113331, 0.935656836461126, 0.8915427735803071, 0.1815744577138679, 0.18230563002680966, 0.1657323909334633, 0.11869363880087741, 0.0967584694126249, 0.09042164270046307, 0.10114550329027541, 0.14404094564952474, 0.29100658055081646, 0.29807457957592004, 0.7072873507189861, 0.9329758713136729, 0.6222276383134292, 0.05727516451377041, 0.04338289056787716, 0.031684133560809166, 0.026565927370216916, 0.0190104801364855, 0.015842066780404583, 0.014379722154521083, 0.014623446258834999, 0.014135998050207165, 0.01389227394589325, 0.014379722154521083, 0.014379722154521083, 0.015110894467462832, 0.014867170363148916, 0.015110894467462832, 0.015842066780404583, 0.8498659517426274, 0.019254204240799416, 0.020472824762369, 0.9478430416768219, 0.023641238118449915, 0.024128686327077747, 0.022910065805508164, 0.026565927370216916, 0.02559103095296125, 0.02607847916158908, 0.028028271996100414, 0.04508895929807458, 0.7445771386790153, 0.815744577138679, 0.8554716061418475, 0.91225932244699, 0.9339507677309286, 0.9446746283207409, 0.9232269071411162, 0.9022666341701194, 0.8415793321959542, 0.7852790640994395, 0.7004630757981964, 0.5318059956129662, 0.1944918352425055, 0.08554716061418474, 0.054350475262003414, 0.055569095783573, 0.06409943943456008, 0.8781379478430417, 0.6224713624177431, 0.076041920545942, 0.06190592249573483, 0.059956129661223496, 0.058250060931026075, 0.9107969778211065, 0.9324884231050451, 0.8834998781379478, 0.058981233243967826, 0.06166219839142091, 0.06312454301730441, 0.06239337070436266, 0.06385571533024616, 0.06678040458201316, 0.07019254204240799, 0.8367048501096759, 0.9429685595905435, 0.909578357299537, 0.7711430660492322, 0.6068730197416524, 0.5205946868145259, 0.17231294174993908, 0.10187667560321716, 0.9373629051913234, 0.94711186936388, 0.9449183524250548, 0.9359005605654399, 0.08749695344869608, 0.08749695344869608, 0.08432854009261516, 0.08432854009261516, 0.08579088471849866, 0.08213502315378991, 0.6643919083597368, 0.84815988301243, 0.9332195954179868, 0.6936388008774068, 0.6239337070436266, 0.50280282719961, 0.0865220570314404, 0.084815988301243, 0.0850597124055569, 0.08969047038752133, 0.11918108700950523, 0.0952961247867414, 0.09164026322203266, 0.09090909090909091, 0.09237143553497441, 0.09188398732634658, 0.09237143553497441, 0.09310260784791616, 0.0938337801608579, 0.09407750426517182, 0.09432122836948574, 0.09602729709968316, 0.09700219351693883, 0.1009017791859615, 0.10748233000243725, 0.12039970753107482, 0.13575432610285157, 0.15866439190835974, 0.3173287838167195, 0.40214477211796246], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fe-ADH.gap.json b/pfam_gap_rates/Fe-ADH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5bf1c680ec5d9d17624a38b1727850adf1b9f71
--- /dev/null
+++ b/pfam_gap_rates/Fe-ADH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Fe_bilin_red.gap.json b/pfam_gap_rates/Fe_bilin_red.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9522163df71375a7d116751a40017c3c29552757
--- /dev/null
+++ b/pfam_gap_rates/Fe_bilin_red.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FemAB.gap.json b/pfam_gap_rates/FemAB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..894acf1e55e66ed01d591361e5d8962be644a2f9
--- /dev/null
+++ b/pfam_gap_rates/FemAB.gap.json
@@ -0,0 +1 @@
+{"family": "FemAB", "n_seqs": 1262, "length": 430, "gap_rates": [0.8811410459587956, 0.838351822503962, 0.7923930269413629, 0.7456418383518225, 0.7218700475435816, 0.6996830427892234, 0.6909667194928685, 0.6862123613312203, 0.6854199683042789, 0.6838351822503962, 0.6798732171156894, 0.6743264659270999, 0.6664025356576863, 0.6695721077654516, 0.6362916006339144, 0.6133122028526149, 0.6053882725832013, 0.5927099841521395, 0.5879556259904913, 0.5871632329635499, 0.5871632329635499, 0.5871632329635499, 0.5871632329635499, 0.5871632329635499, 0.5871632329635499, 0.5863708399366085, 0.5855784469096672, 0.5855784469096672, 0.7083993660855784, 0.7028526148969889, 0.5871632329635499, 0.5839936608557845, 0.5871632329635499, 0.5847860538827259, 0.5832012678288431, 0.5847860538827259, 0.5832012678288431, 0.5824088748019017, 0.5832012678288431, 0.5832012678288431, 0.5824088748019017, 0.5816164817749604, 0.5903328050713154, 0.722662440570523, 0.6014263074484945, 0.598256735340729, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_13.gap.json b/pfam_gap_rates/Fer4_13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7208f3f5c142196c0801e7348ff0cf2e7fc2cf4c
--- /dev/null
+++ b/pfam_gap_rates/Fer4_13.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_13", "n_seqs": 1216, "length": 65, "gap_rates": [0.20888157894736842, 0.14720394736842105, 0.22779605263157895, 0.029605263157894735, 0.017269736842105265, 0.015625, 0.015625, 0.014802631578947368, 0.013980263157894737, 0.013980263157894737, 0.013980263157894737, 0.013157894736842105, 0.013157894736842105, 0.014802631578947368, 0.003289473684210526, 0.001644736842105263, 0.0024671052631578946, 0.001644736842105263, 0.0008223684210526315, 0.0008223684210526315, 0.0008223684210526315, 0.0008223684210526315, 0.0008223684210526315, 0.005756578947368421, 0.03782894736842105, 0.2623355263157895, 0.12088815789473684, 0.049342105263157895, 0.027138157894736843, 0.027960526315789474, 0.033717105263157895, 0.07976973684210527, 0.044407894736842105, 0.06085526315789474, 0.03618421052631579, 0.05263157894736842, 0.09292763157894737, 0.8486842105263158, 0.8511513157894737, 0.9391447368421053, 0.9473684210526315, 0.8511513157894737, 0.8511513157894737, 0.84375, 0.08305921052631579, 0.15953947368421054, 0.18585526315789475, 0.1611842105263158, 0.078125, 0.028782894736842105, 0.008223684210526315, 0.007401315789473684, 0.007401315789473684, 0.007401315789473684, 0.008223684210526315, 0.008223684210526315, 0.008223684210526315, 0.008223684210526315, 0.009046052631578948, 0.009868421052631578, 0.011513157894736841, 0.013157894736842105, 0.02138157894736842, 0.14473684210526316, 0.5797697368421053], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_16.gap.json b/pfam_gap_rates/Fer4_16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a71c85af209517621a979d64bc8f7b65ef25a91a
--- /dev/null
+++ b/pfam_gap_rates/Fer4_16.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_16", "n_seqs": 1618, "length": 75, "gap_rates": [0.31829419035846723, 0.022249690976514216, 0.018541409147095178, 0.007416563658838072, 0.002472187886279357, 0.002472187886279357, 0.002472187886279357, 0.002472187886279357, 0.002472187886279357, 0.0012360939431396785, 0.0012360939431396785, 0.0012360939431396785, 0.0012360939431396785, 0.0012360939431396785, 0.0012360939431396785, 0.0012360939431396785, 0.0012360939431396785, 0.0012360939431396785, 0.0012360939431396785, 0.0012360939431396785, 0.7917181705809642, 0.8485784919653894, 0.7632880098887516, 0.6619283065512979, 0.6365883807169345, 0.08838071693448703, 0.006180469715698393, 0.005562422744128554, 0.0012360939431396785, 0.005562422744128554, 0.004326328800988875, 0.002472187886279357, 0.005562422744128554, 0.0173053152039555, 0.0173053152039555, 0.0315203955500618, 0.9110012360939431, 0.9474660074165636, 0.9208899876390606, 0.869592088998764, 0.1477132262051916, 0.019777503090234856, 0.004326328800988875, 0.0030902348578491965, 0.008034610630407911, 0.002472187886279357, 0.0012360939431396785, 0.001854140914709518, 0.0030902348578491965, 0.0030902348578491965, 0.0030902348578491965, 0.005562422744128554, 0.005562422744128554, 0.006798516687268232, 0.012978986402966625, 0.027194066749072928, 0.7793572311495673, 0.12793572311495674, 0.06056860321384425, 0.019777503090234856, 0.014833127317676144, 0.003708281829419036, 0.001854140914709518, 0.0, 0.0006180469715698393, 0.0006180469715698393, 0.0006180469715698393, 0.0006180469715698393, 0.0012360939431396785, 0.0006180469715698393, 0.0006180469715698393, 0.0006180469715698393, 0.0030902348578491965, 0.05253399258343634, 0.35290482076637825], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_NifH.gap.json b/pfam_gap_rates/Fer4_NifH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8fbbab8beb3608f5119a8a8edca4290064044f0
--- /dev/null
+++ b/pfam_gap_rates/Fer4_NifH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FerB.gap.json b/pfam_gap_rates/FerB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1311003d39e5d8b04da189a34e17332835f52fb4
--- /dev/null
+++ b/pfam_gap_rates/FerB.gap.json
@@ -0,0 +1 @@
+{"family": "FerB", "n_seqs": 205, "length": 77, "gap_rates": [0.07804878048780488, 0.02926829268292683, 0.01951219512195122, 0.014634146341463415, 0.00975609756097561, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.01951219512195122, 0.6585365853658537, 0.014634146341463415, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.014634146341463415, 0.024390243902439025, 0.02926829268292683, 0.03414634146341464, 0.03902439024390244, 0.05365853658536585, 0.2682926829268293, 0.25853658536585367, 0.28780487804878047, 0.2780487804878049, 0.3853658536585366, 0.3073170731707317, 0.2048780487804878, 0.06341463414634146, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.06829268292682927, 0.08292682926829269], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ferritin-like.gap.json b/pfam_gap_rates/Ferritin-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5a0cfa6e410ae572dc8db92d538dcc2bfaba5c8
--- /dev/null
+++ b/pfam_gap_rates/Ferritin-like.gap.json
@@ -0,0 +1 @@
+{"family": "Ferritin-like", "n_seqs": 120, "length": 352, "gap_rates": [0.23333333333333334, 0.10833333333333334, 0.09166666666666666, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.775, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.06666666666666667, 0.19166666666666668, 0.5916666666666667, 0.6333333333333333, 0.6416666666666667, 0.7, 0.725, 0.7416666666666667, 0.7666666666666667, 0.7666666666666667, 0.7833333333333333, 0.7833333333333333, 0.7916666666666666, 0.8, 0.8333333333333334, 0.95, 0.95, 0.95, 0.95, 0.9166666666666666, 0.8166666666666667, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Fil_haemagg.gap.json b/pfam_gap_rates/Fil_haemagg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..409f543d103aadd704fd673aa580da965942f5a0
--- /dev/null
+++ b/pfam_gap_rates/Fil_haemagg.gap.json
@@ -0,0 +1 @@
+{"family": "Fil_haemagg", "n_seqs": 1168, "length": 112, "gap_rates": [0.8921232876712328, 0.7722602739726028, 0.6952054794520548, 0.6352739726027398, 0.5847602739726028, 0.5453767123287672, 0.5085616438356164, 0.4828767123287671, 0.4648972602739726, 0.4563356164383562, 0.4563356164383562, 0.8279109589041096, 0.8433219178082192, 0.8501712328767124, 0.8544520547945206, 0.8664383561643836, 0.8758561643835616, 0.889554794520548, 0.9041095890410958, 0.9212328767123288, 0.9315068493150684, 0.928082191780822, 0.9152397260273972, 0.8946917808219178, 0.8818493150684932, 0.872431506849315, 0.8595890410958904, 0.851027397260274, 0.8467465753424658, 0.8407534246575342, 0.7996575342465754, 0.7748287671232876, 0.7397260273972602, 0.6866438356164384, 0.6018835616438356, 0.4657534246575342, 0.2645547945205479, 0.1618150684931507, 0.1267123287671233, 0.0976027397260274, 0.0839041095890411, 0.06506849315068493, 0.04965753424657534, 0.04280821917808219, 0.039383561643835614, 0.03767123287671233, 0.032534246575342464, 0.04366438356164384, 0.0273972602739726, 0.025684931506849314, 0.025684931506849314, 0.023116438356164382, 0.021404109589041095, 0.018835616438356163, 0.016267123287671232, 0.012842465753424657, 0.011986301369863013, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.8450342465753424, 0.01113013698630137, 0.018835616438356163, 0.019691780821917807, 0.026541095890410957, 0.05650684931506849, 0.11386986301369863, 0.09845890410958905, 0.0916095890410959, 0.10787671232876712, 0.14126712328767124, 0.23972602739726026, 0.2611301369863014, 0.2808219178082192, 0.285958904109589, 0.288527397260274, 0.2979452054794521, 0.3202054794520548, 0.3287671232876712, 0.339041095890411, 0.3450342465753425, 0.3553082191780822, 0.3758561643835616, 0.6720890410958904, 0.7123287671232876, 0.7388698630136986, 0.7970890410958904, 0.8681506849315068, 0.9049657534246576, 0.940068493150685, 0.9486301369863014, 0.9443493150684932, 0.9306506849315068, 0.8929794520547946, 0.8304794520547946, 0.7568493150684932, 0.7243150684931506, 0.7011986301369864, 0.5582191780821918, 0.2046232876712329, 0.2422945205479452, 0.2457191780821918, 0.2508561643835616, 0.2645547945205479, 0.2808219178082192, 0.3090753424657534, 0.3595890410958904, 0.3809931506849315, 0.4229452054794521, 0.4811643835616438, 0.5830479452054794, 0.7534246575342466], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fil_haemagg_2.gap.json b/pfam_gap_rates/Fil_haemagg_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..726bf1f131c9968630edd48b7018d23e813ea427
--- /dev/null
+++ b/pfam_gap_rates/Fil_haemagg_2.gap.json
@@ -0,0 +1 @@
+{"family": "Fil_haemagg_2", "n_seqs": 606, "length": 182, "gap_rates": [0.8646864686468647, 0.6881188118811881, 0.6270627062706271, 0.5577557755775577, 0.5099009900990099, 0.46864686468646866, 0.4389438943894389, 0.3910891089108911, 0.35148514851485146, 0.3234323432343234, 0.297029702970297, 0.25742574257425743, 0.23102310231023102, 0.21287128712871287, 0.19306930693069307, 0.18316831683168316, 0.17656765676567657, 0.17491749174917492, 0.16501650165016502, 0.15676567656765678, 0.15181518151815182, 0.14521452145214522, 0.1716171617161716, 0.929042904290429, 0.2508250825082508, 0.21782178217821782, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12706270627062707, 0.12706270627062707, 0.12706270627062707, 0.12706270627062707, 0.12211221122112212, 0.13696369636963696, 0.8201320132013201, 0.8481848184818482, 0.9141914191419142, 0.933993399339934, 0.900990099009901, 0.8250825082508251, 0.8118811881188119, 0.6914191419141914, 0.12211221122112212, 0.11221122112211221, 0.11221122112211221, 0.10891089108910891, 0.10561056105610561, 0.10231023102310231, 0.10231023102310231, 0.10561056105610561, 0.10396039603960396, 0.10066006600660066, 0.09900990099009901, 0.09735973597359736, 0.10066006600660066, 0.9422442244224423, 0.24257425742574257, 0.09900990099009901, 0.09735973597359736, 0.09570957095709572, 0.20627062706270627, 0.09570957095709572, 0.09570957095709572, 0.09405940594059406, 0.9438943894389439, 0.09405940594059406, 0.09405940594059406, 0.09570957095709572, 0.09405940594059406, 0.09405940594059406, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.13696369636963696, 0.12376237623762376, 0.14356435643564355, 0.14026402640264027, 0.24752475247524752, 0.25742574257425743, 0.19141914191419143, 0.17986798679867988, 0.1716171617161716, 0.1782178217821782, 0.18316831683168316, 0.20297029702970298, 0.4570957095709571, 0.42244224422442245, 0.26732673267326734, 0.26567656765676567, 0.25412541254125415, 0.264026402640264, 0.36303630363036304, 0.3217821782178218, 0.334983498349835, 0.3085808580858086, 0.29372937293729373, 0.2986798679867987, 0.3250825082508251, 0.48184818481848185, 0.6881188118811881, 0.6171617161716172, 0.5511551155115512, 0.4537953795379538, 0.4042904290429043, 0.367986798679868, 0.3547854785478548, 0.3465346534653465, 0.33828382838283827, 0.33003300330033003, 0.334983498349835, 0.3448844884488449, 0.3415841584158416, 0.3448844884488449, 0.3465346534653465, 0.3481848184818482, 0.3465346534653465, 0.4075907590759076, 0.3910891089108911, 0.36468646864686466, 0.3547854785478548, 0.3564356435643564, 0.3564356435643564, 0.3613861386138614, 0.36303630363036304, 0.3696369636963696, 0.37293729372937295, 0.37293729372937295, 0.5099009900990099, 0.3910891089108911, 0.38778877887788776, 0.9273927392739274, 0.38943894389438943, 0.38778877887788776, 0.38778877887788776, 0.38778877887788776, 0.38778877887788776, 0.38778877887788776, 0.38943894389438943, 0.4207920792079208, 0.3943894389438944, 0.3943894389438944, 0.39603960396039606, 0.39933993399339934, 0.39933993399339934, 0.39933993399339934, 0.3943894389438944, 0.39603960396039606, 0.40594059405940597, 0.40594059405940597, 0.41089108910891087, 0.41089108910891087, 0.801980198019802, 0.4158415841584158, 0.4306930693069307, 0.43234323432343236, 0.4405940594059406, 0.4438943894389439, 0.44554455445544555, 0.4537953795379538, 0.9455445544554455, 0.5346534653465347, 0.4570957095709571, 0.4636963696369637, 0.46204620462046203, 0.46204620462046203, 0.46204620462046203, 0.47029702970297027, 0.4801980198019802, 0.4801980198019802, 0.4884488448844885, 0.4900990099009901, 0.49834983498349833, 0.5082508250825083, 0.5148514851485149, 0.528052805280528, 0.5478547854785478, 0.599009900990099, 0.6237623762376238, 0.6782178217821783, 0.7376237623762376, 0.8151815181518152], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FimP.gap.json b/pfam_gap_rates/FimP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6d694c48d324c5b1376448b2bcb967a762f3161
--- /dev/null
+++ b/pfam_gap_rates/FimP.gap.json
@@ -0,0 +1 @@
+{"family": "FimP", "n_seqs": 307, "length": 406, "gap_rates": [0.5602605863192183, 0.1758957654723127, 0.16612377850162866, 0.16612377850162866, 0.16286644951140064, 0.16286644951140064, 0.16286644951140064, 0.16286644951140064, 0.1563517915309446, 0.1563517915309446, 0.15309446254071662, 0.1498371335504886, 0.1498371335504886, 0.1465798045602606, 0.1465798045602606, 0.14006514657980457, 0.13680781758957655, 0.13680781758957655, 0.13680781758957655, 0.13355048859934854, 0.1270358306188925, 0.1237785016286645, 0.1237785016286645, 0.1237785016286645, 0.12052117263843648, 0.12052117263843648, 0.11726384364820847, 0.11726384364820847, 0.12052117263843648, 0.12052117263843648, 0.12052117263843648, 0.11726384364820847, 0.11400651465798045, 0.11400651465798045, 0.11400651465798045, 0.11400651465798045, 0.11400651465798045, 0.11074918566775244, 0.11074918566775244, 0.11074918566775244, 0.11074918566775244, 0.11400651465798045, 0.11400651465798045, 0.10749185667752444, 0.10749185667752444, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Fis1_TPR_N.gap.json b/pfam_gap_rates/Fis1_TPR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c033c98bb4ef9e251637cc926241e14a59c1b0f
--- /dev/null
+++ b/pfam_gap_rates/Fis1_TPR_N.gap.json
@@ -0,0 +1 @@
+{"family": "Fis1_TPR_N", "n_seqs": 253, "length": 33, "gap_rates": [0.47035573122529645, 0.11857707509881422, 0.08695652173913043, 0.05138339920948617, 0.023715415019762844, 0.015810276679841896, 0.015810276679841896, 0.015810276679841896, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007905138339920948, 0.019762845849802372, 0.003952569169960474, 0.0, 0.015810276679841896, 0.0, 0.0, 0.0, 0.003952569169960474, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.011857707509881422, 0.015810276679841896, 0.03162055335968379, 0.05138339920948617, 0.09090909090909091, 0.17391304347826086, 0.41106719367588934, 0.7035573122529645], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FixS.gap.json b/pfam_gap_rates/FixS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86ba8069bb8c8424f4202368845428d06def78e0
--- /dev/null
+++ b/pfam_gap_rates/FixS.gap.json
@@ -0,0 +1 @@
+{"family": "FixS", "n_seqs": 451, "length": 44, "gap_rates": [0.3392461197339246, 0.13082039911308205, 0.06430155210643015, 0.050997782705099776, 0.03547671840354767, 0.026607538802660754, 0.022172949002217297, 0.022172949002217297, 0.019955654101995565, 0.019955654101995565, 0.017738359201773836, 0.013303769401330377, 0.011086474501108648, 0.011086474501108648, 0.008869179600886918, 0.004434589800443459, 0.004434589800443459, 0.004434589800443459, 0.004434589800443459, 0.004434589800443459, 0.0, 0.0, 0.0022172949002217295, 0.0022172949002217295, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0022172949002217295, 0.004434589800443459, 0.004434589800443459, 0.008869179600886918, 0.011086474501108648, 0.024390243902439025, 0.04878048780487805, 0.188470066518847], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FlaE.gap.json b/pfam_gap_rates/FlaE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..448b5a1eaea454bfca96a90e1596046263a7a253
--- /dev/null
+++ b/pfam_gap_rates/FlaE.gap.json
@@ -0,0 +1 @@
+{"family": "FlaE", "n_seqs": 674, "length": 220, "gap_rates": [0.827893175074184, 0.6691394658753709, 0.5830860534124629, 0.5074183976261127, 0.45252225519287836, 0.4124629080118694, 0.36795252225519287, 0.2878338278931751, 0.22551928783382788, 0.1543026706231454, 0.12166172106824925, 0.05934718100890208, 0.04154302670623145, 0.03412462908011869, 0.02967359050445104, 0.02967359050445104, 0.025222551928783383, 0.02225519287833828, 0.02225519287833828, 0.02225519287833828, 0.02225519287833828, 0.020771513353115726, 0.019287833827893175, 0.019287833827893175, 0.016320474777448073, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.013353115727002967, 0.013353115727002967, 0.013353115727002967, 0.013353115727002967, 0.02373887240356083, 0.4198813056379822, 0.6839762611275965, 0.7581602373887241, 0.857566765578635, 0.9272997032640949, 0.9094955489614244, 0.8249258160237388, 0.7077151335311572, 0.5890207715133531, 0.032640949554896145, 0.028189910979228485, 0.013353115727002967, 0.9243323442136498, 0.01483679525222552, 0.013353115727002967, 0.013353115727002967, 0.013353115727002967, 0.01483679525222552, 0.01483679525222552, 0.8649851632047477, 0.14688427299703263, 0.8189910979228486, 0.8738872403560831, 0.9495548961424333, 0.9317507418397626, 0.8427299703264095, 0.7967359050445104, 0.04451038575667656, 0.10385756676557864, 0.43026706231454004, 0.41543026706231456, 0.39465875370919884, 0.3486646884272997, 0.3249258160237389, 0.13501483679525222, 0.5074183976261127, 0.5875370919881305, 0.6839762611275965, 0.7685459940652819, 0.8264094955489614, 0.8664688427299704, 0.8916913946587537, 0.9080118694362018, 0.9154302670623146, 0.9287833827893175, 0.9406528189910979, 0.9451038575667656, 0.9480712166172107, 0.9436201780415431, 0.9362017804154302, 0.9198813056379822, 0.9109792284866469, 0.8991097922848664, 0.8857566765578635, 0.857566765578635, 0.7952522255192879, 0.7373887240356083, 0.642433234421365, 0.5459940652818991, 0.4762611275964392, 0.040059347181008904, 0.020771513353115726, 0.016320474777448073, 0.011869436201780416, 0.011869436201780416, 0.010385756676557863, 0.010385756676557863, 0.008902077151335312, 0.008902077151335312, 0.010385756676557863, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.9169139465875371, 0.028189910979228485, 0.010385756676557863, 0.010385756676557863, 0.008902077151335312, 0.008902077151335312, 0.010385756676557863, 0.1083086053412463, 0.06379821958456973, 0.06528189910979229, 0.05489614243323442, 0.07863501483679525, 0.09643916913946587, 0.10089020771513353, 0.12166172106824925, 0.18397626112759644, 0.8649851632047477, 0.5445103857566765, 0.3664688427299703, 0.8130563798219584, 0.8961424332344213, 0.612759643916914, 0.413946587537092, 0.4421364985163205, 0.4332344213649852, 0.3649851632047478, 0.39465875370919884, 0.38427299703264095, 0.33827893175074186, 0.3264094955489614, 0.3397626112759644, 0.33827893175074186, 0.09050445103857567, 0.6572700296735905, 0.6913946587537092, 0.7181008902077152, 0.7373887240356083, 0.771513353115727, 0.7922848664688428, 0.827893175074184, 0.8382789317507419, 0.8605341246290801, 0.8902077151335311, 0.9080118694362018, 0.9183976261127597, 0.9317507418397626, 0.9391691394658753, 0.9495548961424333, 0.9347181008902077, 0.9213649851632048, 0.9124629080118695, 0.900593471810089, 0.870919881305638, 0.8471810089020771, 0.8353115727002968, 0.8056379821958457, 0.7833827893175074, 0.7581602373887241, 0.7225519287833828, 0.7047477744807121, 0.6824925816023739, 0.6261127596439169, 0.03560830860534125, 0.05341246290801187, 0.05489614243323442, 0.05341246290801187, 0.05489614243323442, 0.05489614243323442, 0.05489614243323442, 0.05637982195845697, 0.05637982195845697, 0.5845697329376854, 0.5905044510385756, 0.586053412462908, 0.7047477744807121, 0.13056379821958458, 0.8130563798219584, 0.9258160237388724, 0.8071216617210683, 0.13056379821958458, 0.06676557863501484, 0.870919881305638, 0.887240356083086, 0.9198813056379822, 0.9228486646884273, 0.9347181008902077, 0.9391691394658753, 0.9436201780415431, 0.9495548961424333, 0.9465875370919882, 0.9421364985163204, 0.9391691394658753, 0.9243323442136498, 0.9228486646884273, 0.900593471810089, 0.8738872403560831, 0.8694362017804155, 0.05934718100890208, 0.06083086053412463, 0.06231454005934718, 0.06083086053412463, 0.06231454005934718, 0.1083086053412463, 0.0771513353115727, 0.08011869436201781, 0.08160237388724036, 0.10089020771513353, 0.09643916913946587, 0.10385756676557864, 0.10534124629080119, 0.1083086053412463, 0.11127596439169139, 0.11572700296735905, 0.43768545994065283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flavodoxin_4.gap.json b/pfam_gap_rates/Flavodoxin_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1927684d4363e3a3464c8faba931aabc56f322b0
--- /dev/null
+++ b/pfam_gap_rates/Flavodoxin_4.gap.json
@@ -0,0 +1 @@
+{"family": "Flavodoxin_4", "n_seqs": 693, "length": 160, "gap_rates": [0.4906204906204906, 0.31601731601731603, 0.2582972582972583, 0.24675324675324675, 0.2453102453102453, 0.24242424242424243, 0.23953823953823955, 0.2352092352092352, 0.2077922077922078, 0.15295815295815296, 0.07215007215007214, 0.06782106782106782, 0.06782106782106782, 0.06637806637806638, 0.06493506493506493, 0.06493506493506493, 0.06060606060606061, 0.06060606060606061, 0.05627705627705628, 0.05627705627705628, 0.05627705627705628, 0.05483405483405483, 0.05483405483405483, 0.05483405483405483, 0.05339105339105339, 0.05339105339105339, 0.05339105339105339, 0.05339105339105339, 0.05339105339105339, 0.05339105339105339, 0.05194805194805195, 0.05483405483405483, 0.06204906204906205, 0.06060606060606061, 0.06204906204906205, 0.06060606060606061, 0.06637806637806638, 0.07647907647907648, 0.1544011544011544, 0.2698412698412698, 0.27994227994227994, 0.22943722943722944, 0.14862914862914864, 0.12265512265512266, 0.13275613275613277, 0.12842712842712842, 0.1544011544011544, 0.15873015873015872, 0.16594516594516595, 0.15728715728715728, 0.15007215007215008, 0.17027417027417027, 0.1471861471861472, 0.13275613275613277, 0.20634920634920634, 0.19624819624819625, 0.22510822510822512, 0.12842712842712842, 0.1038961038961039, 0.07647907647907648, 0.0707070707070707, 0.05916305916305916, 0.06782106782106782, 0.05339105339105339, 0.06637806637806638, 0.05772005772005772, 0.06782106782106782, 0.050505050505050504, 0.050505050505050504, 0.044733044733044736, 0.03751803751803752, 0.03607503607503607, 0.03463203463203463, 0.03463203463203463, 0.03318903318903319, 0.03318903318903319, 0.031746031746031744, 0.030303030303030304, 0.030303030303030304, 0.02886002886002886, 0.030303030303030304, 0.031746031746031744, 0.03318903318903319, 0.03463203463203463, 0.03896103896103896, 0.04040404040404041, 0.04329004329004329, 0.04184704184704185, 0.04184704184704185, 0.046176046176046176, 0.05194805194805195, 0.044733044733044736, 0.047619047619047616, 0.04040404040404041, 0.03751803751803752, 0.03751803751803752, 0.03896103896103896, 0.04329004329004329, 0.04184704184704185, 0.047619047619047616, 0.044733044733044736, 0.046176046176046176, 0.046176046176046176, 0.04329004329004329, 0.046176046176046176, 0.044733044733044736, 0.044733044733044736, 0.046176046176046176, 0.044733044733044736, 0.044733044733044736, 0.044733044733044736, 0.05194805194805195, 0.06493506493506493, 0.06637806637806638, 0.10101010101010101, 0.09090909090909091, 0.11255411255411256, 0.10101010101010101, 0.10245310245310245, 0.1111111111111111, 0.10966810966810966, 0.11255411255411256, 0.11976911976911978, 0.12121212121212122, 0.1370851370851371, 0.14285714285714285, 0.15295815295815296, 0.1645021645021645, 0.17027417027417027, 0.18037518037518038, 0.19336219336219337, 0.20923520923520925, 0.2049062049062049, 0.215007215007215, 0.23088023088023088, 0.24675324675324675, 0.26406926406926406, 0.2712842712842713, 0.2784992784992785, 0.948051948051948, 0.8845598845598845, 0.2886002886002886, 0.2972582972582973, 0.4357864357864358, 0.37806637806637805, 0.9191919191919192, 0.948051948051948, 0.9148629148629148, 0.3708513708513709, 0.3564213564213564, 0.36075036075036077, 0.37662337662337664, 0.3924963924963925, 0.4069264069264069, 0.4098124098124098, 0.417027417027417, 0.4329004329004329, 0.494949494949495, 0.6392496392496393, 0.834054834054834], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FlgM.gap.json b/pfam_gap_rates/FlgM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16c7e800aa658d6191433f071eb997e09bd4dd92
--- /dev/null
+++ b/pfam_gap_rates/FlgM.gap.json
@@ -0,0 +1 @@
+{"family": "FlgM", "n_seqs": 710, "length": 59, "gap_rates": [0.38591549295774646, 0.2802816901408451, 0.21830985915492956, 0.2028169014084507, 0.19295774647887323, 0.18450704225352113, 0.18028169014084508, 0.1647887323943662, 0.1563380281690141, 0.15352112676056337, 0.14225352112676057, 0.15070422535211267, 0.16619718309859155, 0.14507042253521127, 0.12535211267605634, 0.11408450704225352, 0.11267605633802817, 0.3957746478873239, 0.3436619718309859, 0.9436619718309859, 0.9197183098591549, 0.2267605633802817, 0.16619718309859155, 0.0676056338028169, 0.04507042253521127, 0.8760563380281691, 0.04929577464788732, 0.8943661971830986, 0.0323943661971831, 0.0014084507042253522, 0.0014084507042253522, 0.0028169014084507044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0014084507042253522, 0.0014084507042253522, 0.0028169014084507044, 0.0028169014084507044, 0.0014084507042253522, 0.0014084507042253522, 0.007042253521126761, 0.01267605633802817, 0.015492957746478873, 0.01971830985915493, 0.022535211267605635, 0.029577464788732393, 0.029577464788732393, 0.035211267605633804, 0.04225352112676056, 0.05211267605633803, 0.07183098591549296, 0.13802816901408452, 0.6704225352112676], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliG_M.gap.json b/pfam_gap_rates/FliG_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27a180afb6ef8b79c00c3d384db39a08c7c1574a
--- /dev/null
+++ b/pfam_gap_rates/FliG_M.gap.json
@@ -0,0 +1 @@
+{"family": "FliG_M", "n_seqs": 940, "length": 75, "gap_rates": [0.5446808510638298, 0.1595744680851064, 0.029787234042553193, 0.013829787234042552, 0.005319148936170213, 0.00425531914893617, 0.0031914893617021275, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.0010638297872340426, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.002127659574468085, 0.0010638297872340426, 0.002127659574468085, 0.002127659574468085, 0.0031914893617021275, 0.0031914893617021275, 0.0031914893617021275, 0.0031914893617021275, 0.0031914893617021275, 0.0031914893617021275, 0.0031914893617021275, 0.0031914893617021275, 0.00425531914893617, 0.00425531914893617, 0.0031914893617021275, 0.0031914893617021275, 0.0031914893617021275, 0.0031914893617021275, 0.00425531914893617, 0.00425531914893617, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.006382978723404255, 0.006382978723404255, 0.006382978723404255, 0.006382978723404255, 0.007446808510638298, 0.007446808510638298, 0.007446808510638298, 0.007446808510638298, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.009574468085106383, 0.009574468085106383, 0.009574468085106383, 0.011702127659574468, 0.014893617021276596, 0.022340425531914895, 0.03723404255319149, 0.05638297872340425, 0.10319148936170212, 0.14680851063829786, 0.2372340425531915, 0.41595744680851066, 0.7170212765957447], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliM.gap.json b/pfam_gap_rates/FliM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e7d047195f4f6c19243e2bd34cc04c6f79041fd
--- /dev/null
+++ b/pfam_gap_rates/FliM.gap.json
@@ -0,0 +1 @@
+{"family": "FliM", "n_seqs": 824, "length": 194, "gap_rates": [0.21844660194174756, 0.19174757281553398, 0.14927184466019416, 0.13228155339805825, 0.12257281553398058, 0.11529126213592233, 0.10679611650485436, 0.09466019417475728, 0.08616504854368932, 0.08009708737864078, 0.07281553398058252, 0.06796116504854369, 0.05461165048543689, 0.038834951456310676, 0.032766990291262135, 0.025485436893203883, 0.021844660194174758, 0.021844660194174758, 0.02063106796116505, 0.02063106796116505, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.01699029126213592, 0.01699029126213592, 0.015776699029126214, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.014563106796116505, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.012135922330097087, 0.012135922330097087, 0.012135922330097087, 0.013349514563106795, 0.012135922330097087, 0.01699029126213592, 0.012135922330097087, 0.013349514563106795, 0.009708737864077669, 0.010922330097087379, 0.013349514563106795, 0.010922330097087379, 0.010922330097087379, 0.010922330097087379, 0.012135922330097087, 0.010922330097087379, 0.009708737864077669, 0.009708737864077669, 0.00849514563106796, 0.009708737864077669, 0.00849514563106796, 0.009708737864077669, 0.00849514563106796, 0.00849514563106796, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.006067961165048544, 0.006067961165048544, 0.006067961165048544, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.006067961165048544, 0.0036407766990291263, 0.0036407766990291263, 0.0036407766990291263, 0.0048543689320388345, 0.0048543689320388345, 0.006067961165048544, 0.44902912621359226, 0.8883495145631068, 0.5800970873786407, 0.023058252427184466, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.006067961165048544, 0.006067961165048544, 0.006067961165048544, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.009708737864077669, 0.006067961165048544, 0.006067961165048544, 0.007281553398058253, 0.006067961165048544, 0.007281553398058253, 0.00849514563106796, 0.006067961165048544, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.00849514563106796, 0.00849514563106796, 0.00849514563106796, 0.00849514563106796, 0.00849514563106796, 0.007281553398058253, 0.00849514563106796, 0.006067961165048544, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.007281553398058253, 0.009708737864077669, 0.009708737864077669, 0.00849514563106796, 0.00849514563106796, 0.007281553398058253, 0.007281553398058253, 0.00849514563106796, 0.00849514563106796, 0.00849514563106796, 0.010922330097087379, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.010922330097087379, 0.010922330097087379, 0.010922330097087379, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.010922330097087379, 0.010922330097087379, 0.012135922330097087, 0.012135922330097087, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.013349514563106795, 0.014563106796116505, 0.01820388349514563, 0.025485436893203883, 0.027912621359223302, 0.03640776699029126, 0.04733009708737864, 0.05946601941747573, 0.06796116504854369, 0.07888349514563107, 0.08980582524271845, 0.125, 0.19053398058252427], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FmdA_AmdA.gap.json b/pfam_gap_rates/FmdA_AmdA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..927c13aeb078c27182cf24bc56aca4a607ca09b7
--- /dev/null
+++ b/pfam_gap_rates/FmdA_AmdA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Fmp27.gap.json b/pfam_gap_rates/Fmp27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9794b3d0347eab996ae5762f78b993b482ee8165
--- /dev/null
+++ b/pfam_gap_rates/Fmp27.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Fra10Ac1.gap.json b/pfam_gap_rates/Fra10Ac1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c90d83087a7e758fe31d16b80dd3948f525c3008
--- /dev/null
+++ b/pfam_gap_rates/Fra10Ac1.gap.json
@@ -0,0 +1 @@
+{"family": "Fra10Ac1", "n_seqs": 217, "length": 172, "gap_rates": [0.2995391705069124, 0.16589861751152074, 0.16129032258064516, 0.14746543778801843, 0.14285714285714285, 0.14285714285714285, 0.1382488479262673, 0.1382488479262673, 0.1382488479262673, 0.1336405529953917, 0.12903225806451613, 0.12442396313364056, 0.12442396313364056, 0.12442396313364056, 0.12442396313364056, 0.12442396313364056, 0.12442396313364056, 0.12442396313364056, 0.12442396313364056, 0.1336405529953917, 0.16129032258064516, 0.33640552995391704, 0.7419354838709677, 0.6543778801843319, 0.9170506912442397, 0.9308755760368663, 0.9493087557603687, 0.9262672811059908, 0.8755760368663594, 0.1336405529953917, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.1152073732718894, 0.11059907834101383, 0.11059907834101383, 0.1152073732718894, 0.1152073732718894, 0.1152073732718894, 0.11059907834101383, 0.10599078341013825, 0.10138248847926268, 0.10138248847926268, 0.10138248847926268, 0.09216589861751152, 0.0967741935483871, 0.08755760368663594, 0.07834101382488479, 0.08294930875576037, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.08294930875576037, 0.08755760368663594, 0.08294930875576037, 0.08294930875576037, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.09216589861751152, 0.0967741935483871, 0.0967741935483871, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.08294930875576037, 0.08294930875576037, 0.08294930875576037, 0.08294930875576037, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.08294930875576037, 0.08294930875576037, 0.08294930875576037, 0.08294930875576037, 0.08294930875576037, 0.08294930875576037, 0.8110599078341014, 0.8202764976958525, 0.8387096774193549, 0.8847926267281107, 0.8986175115207373, 0.9078341013824884, 0.9078341013824884, 0.9124423963133641, 0.9124423963133641, 0.9170506912442397, 0.9216589861751152, 0.9308755760368663, 0.9354838709677419, 0.9400921658986175, 0.9400921658986175, 0.9447004608294931, 0.9447004608294931, 0.9493087557603687, 0.9493087557603687, 0.9493087557603687, 0.9493087557603687, 0.9493087557603687, 0.9493087557603687, 0.9493087557603687, 0.9493087557603687, 0.9493087557603687, 0.9493087557603687, 0.9447004608294931, 0.9447004608294931, 0.9400921658986175, 0.9400921658986175, 0.9308755760368663, 0.9262672811059908, 0.9216589861751152, 0.9124423963133641, 0.9124423963133641, 0.9124423963133641, 0.9078341013824884, 0.9078341013824884, 0.8894009216589862, 0.8617511520737328, 0.8248847926267281, 0.815668202764977, 0.8018433179723502, 0.7926267281105991, 0.8064516129032258, 0.7972350230414746, 0.7695852534562212, 0.0967741935483871, 0.08294930875576037, 0.08294930875576037, 0.07834101382488479, 0.08294930875576037, 0.08294930875576037, 0.09216589861751152, 0.0967741935483871, 0.10599078341013825, 0.11059907834101383, 0.11059907834101383, 0.11059907834101383, 0.11059907834101383, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.10138248847926268, 0.10138248847926268, 0.10138248847926268, 0.1152073732718894, 0.12903225806451613, 0.1336405529953917, 0.1336405529953917, 0.1382488479262673, 0.14746543778801843, 0.15668202764976957, 0.16129032258064516, 0.17972350230414746, 0.1935483870967742, 0.22580645161290322, 0.29493087557603687], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FtsK_4TM.gap.json b/pfam_gap_rates/FtsK_4TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48ac9a04d599588ccd16f6ee89e5a4b38af7a86c
--- /dev/null
+++ b/pfam_gap_rates/FtsK_4TM.gap.json
@@ -0,0 +1 @@
+{"family": "FtsK_4TM", "n_seqs": 1374, "length": 211, "gap_rates": [0.9286754002911208, 0.7852983988355168, 0.6826783114992722, 0.62882096069869, 0.6033478893740902, 0.5829694323144105, 0.49708879184861715, 0.4606986899563319, 0.4534206695778748, 0.44395924308588064, 0.4344978165938865, 0.43231441048034935, 0.4294032023289665, 0.42867540029112083, 0.425764192139738, 0.4243085880640466, 0.4243085880640466, 0.42358078602620086, 0.42212518195050946, 0.42212518195050946, 0.42066957787481807, 0.42066957787481807, 0.42066957787481807, 0.41994177583697234, 0.41994177583697234, 0.41994177583697234, 0.42066957787481807, 0.9039301310043668, 0.9046579330422125, 0.8988355167394468, 0.42139737991266374, 0.42358078602620086, 0.42503639010189226, 0.4279475982532751, 0.4294032023289665, 0.9497816593886463, 0.9286754002911208, 0.43740902474526927, 0.9417758369723436, 0.46652110625909754, 0.4650655021834061, 0.4417758369723435, 0.45997088791848617, 0.5225618631732168, 0.5138282387190685, 0.6004366812227074, 0.5858806404657934, 0.4294032023289665, 0.4148471615720524, 0.39082969432314413, 0.3646288209606987, 0.27438136826783116, 0.16666666666666666, 0.13537117903930132, 0.13100436681222707, 0.1215429403202329, 0.11717612809315867, 0.1098981077147016, 0.10480349344978165, 0.0975254730713246, 0.09534206695778748, 0.08005822416302766, 0.06622998544395925, 0.055312954876273655, 0.046579330422125184, 0.8850072780203785, 0.034934497816593885, 0.019650655021834062, 0.017467248908296942, 0.016739446870451237, 0.016739446870451237, 0.016739446870451237, 0.016739446870451237, 0.016739446870451237, 0.016739446870451237, 0.016739446870451237, 0.016739446870451237, 0.016739446870451237, 0.017467248908296942, 0.016739446870451237, 0.01601164483260553, 0.016739446870451237, 0.018195050946142648, 0.017467248908296942, 0.017467248908296942, 0.018195050946142648, 0.018922852983988356, 0.017467248908296942, 0.017467248908296942, 0.019650655021834062, 0.8864628820960698, 0.9068413391557496, 0.925764192139738, 0.9475982532751092, 0.9417758369723436, 0.9192139737991266, 0.895924308588064, 0.8617176128093159, 0.019650655021834062, 0.07205240174672489, 0.05458515283842795, 0.033478893740902474, 0.8988355167394468, 0.9323144104803494, 0.9490538573508006, 0.9126637554585153, 0.8748180494905385, 0.05167394468704512, 0.026928675400291122, 0.8566229985443959, 0.9024745269286754, 0.9337700145560408, 0.9148471615720524, 0.8755458515283843, 0.826783114992722, 0.019650655021834062, 0.018922852983988356, 0.018195050946142648, 0.017467248908296942, 0.017467248908296942, 0.018195050946142648, 0.018922852983988356, 0.016739446870451237, 0.016739446870451237, 0.017467248908296942, 0.016739446870451237, 0.01601164483260553, 0.021106259097525473, 0.018195050946142648, 0.018195050946142648, 0.019650655021834062, 0.020378457059679767, 0.020378457059679767, 0.9432314410480349, 0.019650655021834062, 0.04730713245997089, 0.04439592430858806, 0.04512372634643377, 0.04439592430858806, 0.15429403202328967, 0.2328966521106259, 0.87117903930131, 0.9155749636098981, 0.7991266375545851, 0.2074235807860262, 0.13537117903930132, 0.7809315866084425, 0.8529839883551674, 0.8828238719068413, 0.9090247452692868, 0.9432314410480349, 0.9235807860262009, 0.8930131004366813, 0.8726346433770015, 0.8093158660844251, 0.745269286754003, 0.12518195050946143, 0.11353711790393013, 0.08296943231441048, 0.046579330422125184, 0.03056768558951965, 0.017467248908296942, 0.015283842794759825, 0.015283842794759825, 0.015283842794759825, 0.01455604075691412, 0.01455604075691412, 0.018195050946142648, 0.015283842794759825, 0.015283842794759825, 0.015283842794759825, 0.017467248908296942, 0.018195050946142648, 0.018195050946142648, 0.021106259097525473, 0.021834061135371178, 0.023289665211062592, 0.022561863173216887, 0.021834061135371178, 0.024017467248908297, 0.029839883551673944, 0.027656477438136828, 0.025473071324599708, 0.026928675400291122, 0.02911208151382824, 0.03129548762736536, 0.03202328966521106, 0.03275109170305677, 0.03711790393013101, 0.04148471615720524, 0.040756914119359534, 0.040756914119359534, 0.040756914119359534, 0.04585152838427948, 0.05240174672489083, 0.05967976710334789, 0.07132459970887918, 0.09170305676855896, 0.11280931586608442, 0.1433770014556041, 0.1812227074235808, 0.22197962154294032, 0.2700145560407569, 0.31513828238719066, 0.3486171761280932, 0.3915574963609898, 0.44905385735080056, 0.5225618631732168, 0.598981077147016, 0.6870451237263464, 0.8144104803493449], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FtsZ_C.gap.json b/pfam_gap_rates/FtsZ_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d86c2edfb381530b7cbf6bfd5757756cf857ff0e
--- /dev/null
+++ b/pfam_gap_rates/FtsZ_C.gap.json
@@ -0,0 +1 @@
+{"family": "FtsZ_C", "n_seqs": 2351, "length": 97, "gap_rates": [0.030625265844321566, 0.025946405784772437, 0.020416843896214378, 0.01786473840918758, 0.016163334751169715, 0.014887282007656316, 0.014036580178647383, 0.013185878349638452, 0.01233517652062952, 0.01233517652062952, 0.012760527435133985, 0.011909825606125054, 0.011909825606125054, 0.011484474691620587, 0.01233517652062952, 0.01105912377711612, 0.009783071033602722, 0.00893236920459379, 0.008507018290089324, 0.008507018290089324, 0.008507018290089324, 0.008081667375584857, 0.008081667375584857, 0.0076563164610803916, 0.0076563164610803916, 0.007230965546575925, 0.007230965546575925, 0.0063802637175669925, 0.0063802637175669925, 0.0063802637175669925, 0.6120799659719268, 0.006805614632071459, 0.005954912803062527, 0.00552956188855806, 0.00552956188855806, 0.005954912803062527, 0.005954912803062527, 0.005954912803062527, 0.005104210974053594, 0.0034028073160357296, 0.0029774564015312634, 0.0034028073160357296, 0.0038281582305401958, 0.0034028073160357296, 0.0038281582305401958, 0.0076563164610803916, 0.04593789876648235, 0.04423649510846448, 0.0063802637175669925, 0.0038281582305401958, 0.0038281582305401958, 0.0034028073160357296, 0.0029774564015312634, 0.002552105487026797, 0.002552105487026797, 0.002552105487026797, 0.002552105487026797, 0.0038281582305401958, 0.0038281582305401958, 0.0038281582305401958, 0.005104210974053594, 0.004253509145044662, 0.007230965546575925, 0.009783071033602722, 0.011909825606125054, 0.010633772862611655, 0.00893236920459379, 0.0063802637175669925, 0.0063802637175669925, 0.0076563164610803916, 0.006805614632071459, 0.006805614632071459, 0.006805614632071459, 0.007230965546575925, 0.007230965546575925, 0.007230965546575925, 0.0076563164610803916, 0.0076563164610803916, 0.007230965546575925, 0.007230965546575925, 0.008507018290089324, 0.009357720119098255, 0.009783071033602722, 0.9459804338579328, 0.009783071033602722, 0.011909825606125054, 0.01105912377711612, 0.011484474691620587, 0.011484474691620587, 0.011484474691620587, 0.011909825606125054, 0.013611229264142918, 0.017014036580178648, 0.018290089323692044, 0.02211824755423224, 0.031050616758826033, 0.43811144193960017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fucose_iso_N1.gap.json b/pfam_gap_rates/Fucose_iso_N1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d514a7dd180fc30285e850cca50075ef70e20f4
--- /dev/null
+++ b/pfam_gap_rates/Fucose_iso_N1.gap.json
@@ -0,0 +1 @@
+{"family": "Fucose_iso_N1", "n_seqs": 177, "length": 177, "gap_rates": [0.480225988700565, 0.0847457627118644, 0.05649717514124294, 0.05649717514124294, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.07344632768361582, 0.07344632768361582, 0.7627118644067796, 0.7627118644067796, 0.1694915254237288, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05649717514124294, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.05649717514124294, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.12994350282485875, 0.13559322033898305, 0.13559322033898305, 0.12994350282485875, 0.12994350282485875, 0.12429378531073447, 0.0903954802259887, 0.05649717514124294, 0.05649717514124294, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.04519774011299435, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.02824858757062147, 0.8757062146892656, 0.8813559322033898, 0.8870056497175142, 0.8813559322033898, 0.8757062146892656, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.02824858757062147, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.15254237288135594, 0.022598870056497175, 0.01694915254237288, 0.01694915254237288, 0.022598870056497175, 0.022598870056497175, 0.12429378531073447, 0.11299435028248588, 0.11299435028248588, 0.9322033898305084, 0.11864406779661017, 0.11864406779661017, 0.12429378531073447, 0.12994350282485875, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.05649717514124294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Furin-like.gap.json b/pfam_gap_rates/Furin-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..300daee1c178f055894a362b890a1e52ebe4c575
--- /dev/null
+++ b/pfam_gap_rates/Furin-like.gap.json
@@ -0,0 +1 @@
+{"family": "Furin-like", "n_seqs": 296, "length": 204, "gap_rates": [0.8885135135135135, 0.8682432432432432, 0.831081081081081, 0.8175675675675675, 0.8108108108108109, 0.7702702702702703, 0.7162162162162162, 0.6216216216216216, 0.5067567567567568, 0.4391891891891892, 0.39864864864864863, 0.34797297297297297, 0.31756756756756754, 0.3277027027027027, 0.32094594594594594, 0.31756756756756754, 0.30067567567567566, 0.24324324324324326, 0.7837837837837838, 0.8209459459459459, 0.847972972972973, 0.8614864864864865, 0.8412162162162162, 0.8040540540540541, 0.7533783783783784, 0.2533783783783784, 0.34797297297297297, 0.25, 0.2635135135135135, 0.9222972972972973, 0.20608108108108109, 0.20270270270270271, 0.19932432432432431, 0.19594594594594594, 0.1891891891891892, 0.5777027027027027, 0.5743243243243243, 0.17905405405405406, 0.17905405405405406, 0.17567567567567569, 0.46959459459459457, 0.543918918918919, 0.9290540540540541, 0.9459459459459459, 0.9324324324324325, 0.9121621621621622, 0.5304054054054054, 0.40540540540540543, 0.13175675675675674, 0.10135135135135136, 0.08108108108108109, 0.09121621621621621, 0.10472972972972973, 0.0945945945945946, 0.08445945945945946, 0.08783783783783784, 0.16554054054054054, 0.8952702702702703, 0.9324324324324325, 0.5540540540540541, 0.08108108108108109, 0.08108108108108109, 0.06756756756756757, 0.44256756756756754, 0.8682432432432432, 0.40202702702702703, 0.060810810810810814, 0.05405405405405406, 0.05067567567567568, 0.04391891891891892, 0.037162162162162164, 0.037162162162162164, 0.037162162162162164, 0.030405405405405407, 0.030405405405405407, 0.030405405405405407, 0.030405405405405407, 0.033783783783783786, 0.037162162162162164, 0.030405405405405407, 0.030405405405405407, 0.030405405405405407, 0.030405405405405407, 0.06418918918918919, 0.7533783783783784, 0.037162162162162164, 0.033783783783783786, 0.02702702702702703, 0.02702702702702703, 0.02364864864864865, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02364864864864865, 0.02364864864864865, 0.02364864864864865, 0.02027027027027027, 0.9459459459459459, 0.9324324324324325, 0.02027027027027027, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.5067567567567568, 0.5067567567567568, 0.5101351351351351, 0.5101351351351351, 0.5101351351351351, 0.5101351351351351, 0.5101351351351351, 0.5405405405405406, 0.5371621621621622, 0.5101351351351351, 0.5101351351351351, 0.5101351351351351, 0.5101351351351351, 0.5067567567567568, 0.5067567567567568, 0.5067567567567568, 0.02027027027027027, 0.016891891891891893, 0.013513513513513514, 0.016891891891891893, 0.02702702702702703, 0.5675675675675675, 0.02702702702702703, 0.030405405405405407, 0.030405405405405407, 0.033783783783783786, 0.033783783783783786, 0.5472972972972973, 0.543918918918919, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.05067567567567568, 0.5608108108108109, 0.5844594594594594, 0.6655405405405406, 0.7331081081081081, 0.8040540540540541, 0.918918918918919, 0.9391891891891891, 0.9358108108108109, 0.8783783783783784, 0.7905405405405406, 0.7162162162162162, 0.6418918918918919, 0.581081081081081, 0.5912162162162162, 0.5945945945945946, 0.5844594594594594, 0.5608108108108109, 0.42567567567567566, 0.0777027027027027, 0.07432432432432433, 0.0777027027027027, 0.0777027027027027, 0.0777027027027027, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.0777027027027027, 0.0777027027027027, 0.0777027027027027, 0.0777027027027027, 0.0777027027027027, 0.08445945945945946, 0.23648648648648649, 0.4527027027027027, 0.875, 0.9425675675675675, 0.597972972972973, 0.20945945945945946, 0.14864864864864866, 0.0945945945945946, 0.09121621621621621, 0.09121621621621621, 0.09121621621621621, 0.0945945945945946, 0.09797297297297297, 0.10135135135135136, 0.10472972972972973, 0.9155405405405406, 0.11486486486486487, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.13175675675675674, 0.17229729729729729, 0.21621621621621623, 0.5067567567567568], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FxsA.gap.json b/pfam_gap_rates/FxsA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b27165ea12fcfb032f894fd2deb3c41716188aa0
--- /dev/null
+++ b/pfam_gap_rates/FxsA.gap.json
@@ -0,0 +1 @@
+{"family": "FxsA", "n_seqs": 608, "length": 109, "gap_rates": [0.6858552631578947, 0.17598684210526316, 0.0625, 0.039473684210526314, 0.029605263157894735, 0.024671052631578948, 0.024671052631578948, 0.023026315789473683, 0.02138157894736842, 0.02138157894736842, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.018092105263157895, 0.018092105263157895, 0.01644736842105263, 0.01644736842105263, 0.02631578947368421, 0.01644736842105263, 0.014802631578947368, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.014802631578947368, 0.03618421052631579, 0.019736842105263157, 0.019736842105263157, 0.023026315789473683, 0.02138157894736842, 0.023026315789473683, 0.019736842105263157, 0.024671052631578948, 0.018092105263157895, 0.01644736842105263, 0.01644736842105263, 0.014802631578947368, 0.03125, 0.023026315789473683, 0.019736842105263157, 0.029605263157894735, 0.03618421052631579, 0.03125, 0.02138157894736842, 0.011513157894736841, 0.008223684210526315, 0.009868421052631578, 0.008223684210526315, 0.9457236842105263, 0.011513157894736841, 0.013157894736842105, 0.008223684210526315, 0.008223684210526315, 0.006578947368421052, 0.006578947368421052, 0.009868421052631578, 0.009868421052631578, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.004934210526315789, 0.006578947368421052, 0.006578947368421052, 0.023026315789473683, 0.029605263157894735, 0.039473684210526314, 0.047697368421052634, 0.049342105263157895, 0.05592105263157895, 0.05921052631578947, 0.0625, 0.10526315789473684, 0.13322368421052633, 0.20723684210526316, 0.40625, 0.6118421052631579], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/G-patch_2.gap.json b/pfam_gap_rates/G-patch_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f96736d8e4cdeeb4123e164550bbab59ec3f4676
--- /dev/null
+++ b/pfam_gap_rates/G-patch_2.gap.json
@@ -0,0 +1 @@
+{"family": "G-patch_2", "n_seqs": 294, "length": 67, "gap_rates": [0.5068027210884354, 0.35714285714285715, 0.2755102040816326, 0.20748299319727892, 0.17687074829931973, 0.12244897959183673, 0.061224489795918366, 0.9455782312925171, 0.9013605442176871, 0.04081632653061224, 0.04081632653061224, 0.034013605442176874, 0.034013605442176874, 0.027210884353741496, 0.017006802721088437, 0.017006802721088437, 0.017006802721088437, 0.013605442176870748, 0.01020408163265306, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006802721088435374, 0.01020408163265306, 0.1326530612244898, 0.023809523809523808, 0.023809523809523808, 0.02040816326530612, 0.017006802721088437, 0.01020408163265306, 0.013605442176870748, 0.02040816326530612, 0.1326530612244898, 0.30272108843537415, 0.2789115646258503, 0.2925170068027211, 0.8741496598639455, 0.9421768707482994, 0.9183673469387755, 0.8367346938775511, 0.2891156462585034, 0.25170068027210885, 0.16326530612244897, 0.10204081632653061, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.9217687074829932, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.03741496598639456, 0.04081632653061224, 0.05782312925170068, 0.16326530612244897, 0.38095238095238093], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/G10.gap.json b/pfam_gap_rates/G10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a218426a14b55c89aa5d1a4792341e9d5acb8e48
--- /dev/null
+++ b/pfam_gap_rates/G10.gap.json
@@ -0,0 +1 @@
+{"family": "G10", "n_seqs": 367, "length": 148, "gap_rates": [0.3188010899182561, 0.3024523160762943, 0.25340599455040874, 0.21798365122615804, 0.20708446866485014, 0.8719346049046321, 0.3079019073569482, 0.2125340599455041, 0.15258855585831063, 0.35149863760217986, 0.10626702997275204, 0.10626702997275204, 0.1008174386920981, 0.1008174386920981, 0.09536784741144415, 0.09536784741144415, 0.09536784741144415, 0.09536784741144415, 0.09536784741144415, 0.09264305177111716, 0.09264305177111716, 0.09264305177111716, 0.08719346049046321, 0.08174386920980926, 0.07901907356948229, 0.07901907356948229, 0.0681198910081744, 0.0653950953678474, 0.0653950953678474, 0.06267029972752043, 0.05722070844686648, 0.05722070844686648, 0.05722070844686648, 0.05722070844686648, 0.05449591280653951, 0.05449591280653951, 0.05722070844686648, 0.04904632152588556, 0.051771117166212535, 0.04632152588555858, 0.04632152588555858, 0.04904632152588556, 0.04087193460490463, 0.0326975476839237, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.027247956403269755, 0.02452316076294278, 0.02452316076294278, 0.02452316076294278, 0.02452316076294278, 0.027247956403269755, 0.027247956403269755, 0.027247956403269755, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.08991825613079019, 0.0326975476839237, 0.0326975476839237, 0.02997275204359673, 0.02997275204359673, 0.027247956403269755, 0.02452316076294278, 0.027247956403269755, 0.02452316076294278, 0.027247956403269755, 0.027247956403269755, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.02997275204359673, 0.043596730245231606, 0.0326975476839237, 0.0326975476839237, 0.035422343324250684, 0.035422343324250684, 0.035422343324250684, 0.035422343324250684, 0.03814713896457766, 0.03814713896457766, 0.035422343324250684, 0.03814713896457766, 0.03814713896457766, 0.03814713896457766, 0.04087193460490463, 0.04087193460490463, 0.03814713896457766, 0.04904632152588556, 0.07084468664850137, 0.08174386920980926, 0.08446866485013624, 0.08446866485013624, 0.1008174386920981, 0.12534059945504086, 0.12806539509536785, 0.12806539509536785, 0.1335149863760218, 0.1444141689373297, 0.1444141689373297, 0.13896457765667575, 0.1444141689373297, 0.1444141689373297, 0.14986376021798364, 0.15258855585831063, 0.17438692098092642, 0.17166212534059946, 0.888283378746594, 0.15803814713896458, 0.15258855585831063, 0.14713896457765668, 0.14713896457765668, 0.1444141689373297, 0.14713896457765668, 0.14713896457765668, 0.14713896457765668, 0.15258855585831063, 0.15258855585831063, 0.15803814713896458, 0.15803814713896458, 0.15803814713896458, 0.4768392370572207, 0.2615803814713896, 0.22615803814713897, 0.29427792915531337, 0.2452316076294278, 0.5204359673024523, 0.2125340599455041, 0.21525885558583105, 0.2125340599455041, 0.2125340599455041, 0.21798365122615804, 0.22070844686648503, 0.22888283378746593, 0.22888283378746593, 0.23160762942779292, 0.23160762942779292, 0.23433242506811988, 0.23705722070844687, 0.5013623978201635], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GARS_A.gap.json b/pfam_gap_rates/GARS_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f293902ffbff080e0f3b7f9fe7e6f5b7d09be77d
--- /dev/null
+++ b/pfam_gap_rates/GARS_A.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GAS.gap.json b/pfam_gap_rates/GAS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29578e70eb30e3480ec33b578bbfe25823c38146
--- /dev/null
+++ b/pfam_gap_rates/GAS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GATase_4.gap.json b/pfam_gap_rates/GATase_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..234191e418f8e0ab8c2dfdccbbc7e49eb4cdd5cd
--- /dev/null
+++ b/pfam_gap_rates/GATase_4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GBP_C.gap.json b/pfam_gap_rates/GBP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2502a81527e1a1c31030e55994d83f062ef858b5
--- /dev/null
+++ b/pfam_gap_rates/GBP_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GDP_Man_Dehyd.gap.json b/pfam_gap_rates/GDP_Man_Dehyd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df58689dc5cf4c9890f3217d03d4a3b603ad8bc4
--- /dev/null
+++ b/pfam_gap_rates/GDP_Man_Dehyd.gap.json
@@ -0,0 +1 @@
+{"family": "GDP_Man_Dehyd", "n_seqs": 5000, "length": 357, "gap_rates": [0.1438, 0.0904, 0.0864, 0.0852, 0.084, 0.0838, 0.0836, 0.0836, 0.0816, 0.0804, 0.0802, 0.08, 0.0798, 0.0794, 0.0788, 0.0782, 0.0766, 0.0766, 0.0762, 0.0764, 0.1414, 0.0892, 0.0886, 0.094, 0.1242, 0.1116, 0.0948, 0.0998, 0.1148, 0.1134, 0.1244, 0.135, 0.1326, 0.209, 0.1746, 0.1634, 0.115, 0.1, 0.09, 0.0848, 0.0832, 0.0884, 0.1032, 0.1804, 0.4158, 0.585, 0.7416, 0.7352, 0.631, 0.4646, 0.2644, 0.1682, 0.0972, 0.0804, 0.0704, 0.066, 0.063, 0.061, 0.0592, 0.0586, 0.0576, 0.0576, 0.0606, 0.1078, 0.1184, 0.161, 0.159, 0.1596, 0.1276, 0.1172, 0.113, 0.1146, 0.0778, 0.0752, 0.2136, 0.1918, 0.0554, 0.054, 0.0536, 0.0526, 0.0528, 0.0526, 0.0524, 0.0526, 0.0522, 0.0542, 0.052, 0.0528, 0.0524, 0.0528, 0.0556, 0.0566, 0.0548, 0.083, 0.0562, 0.0544, 0.055, 0.0552, 0.0554, 0.0548, 0.0526, 0.0532, 0.0524, 0.0508, 0.0506, 0.0512, 0.0512, 0.0514, 0.0508, 0.051, 0.0506, 0.0508, 0.051, 0.0522, 0.0542, 0.079, 0.1044, 0.3104, 0.417, 0.9022, 0.9224, 0.9434, 0.935, 0.9184, 0.8986, 0.6378, 0.5724, 0.3208, 0.0526, 0.0512, 0.0506, 0.0502, 0.0504, 0.0506, 0.0504, 0.0504, 0.0506, 0.0504, 0.0506, 0.0528, 0.05, 0.0528, 0.0576, 0.8274, 0.9118, 0.7654, 0.0826, 0.0566, 0.0528, 0.9142, 0.0524, 0.0524, 0.0524, 0.0526, 0.8592, 0.8606, 0.8608, 0.8606, 0.855, 0.0532, 0.0542, 0.0538, 0.0538, 0.9456, 0.0528, 0.0524, 0.0514, 0.0514, 0.0512, 0.051, 0.052, 0.0522, 0.0526, 0.053, 0.0526, 0.0528, 0.0528, 0.053, 0.053, 0.0534, 0.0542, 0.0534, 0.0534, 0.0534, 0.0538, 0.06, 0.0572, 0.055, 0.0536, 0.0544, 0.9352, 0.0538, 0.0536, 0.054, 0.054, 0.0542, 0.0542, 0.0538, 0.054, 0.8396, 0.8408, 0.8406, 0.8384, 0.0546, 0.0568, 0.0566, 0.0572, 0.058, 0.15, 0.3632, 0.3554, 0.2734, 0.8966, 0.8894, 0.2124, 0.0842, 0.0972, 0.0848, 0.077, 0.0578, 0.059, 0.0632, 0.0646, 0.0646, 0.0926, 0.0932, 0.1, 0.0812, 0.0666, 0.0878, 0.0856, 0.9482, 0.454, 0.0902, 0.0652, 0.0624, 0.0998, 0.059, 0.876, 0.0572, 0.0564, 0.0566, 0.0656, 0.0654, 0.0558, 0.0548, 0.0548, 0.0552, 0.0552, 0.0552, 0.0554, 0.0556, 0.0558, 0.057, 0.057, 0.0568, 0.0568, 0.0574, 0.0586, 0.0588, 0.116, 0.122, 0.1134, 0.1234, 0.1336, 0.1882, 0.4726, 0.5402, 0.5292, 0.5156, 0.5064, 0.4944, 0.3712, 0.1338, 0.0812, 0.0794, 0.0882, 0.0802, 0.0752, 0.0736, 0.0874, 0.092, 0.0864, 0.0856, 0.091, 0.1088, 0.1082, 0.1004, 0.0936, 0.0896, 0.0822, 0.0874, 0.1124, 0.2038, 0.2486, 0.2428, 0.2684, 0.3302, 0.604, 0.6982, 0.7054, 0.6566, 0.617, 0.5944, 0.5576, 0.565, 0.562, 0.576, 0.5488, 0.476, 0.3374, 0.2624, 0.225, 0.2154, 0.1312, 0.0948, 0.0778, 0.0786, 0.0816, 0.0836, 0.0748, 0.0742, 0.075, 0.0866, 0.0824, 0.0842, 0.079, 0.0782, 0.0724, 0.0712, 0.0708, 0.0692, 0.0684, 0.065, 0.0652, 0.0656, 0.0654, 0.0652, 0.0658, 0.1208, 0.0666, 0.067, 0.0676, 0.0684, 0.0684, 0.0692, 0.0694, 0.0716, 0.0792, 0.095, 0.0968, 0.0998, 0.1044, 0.1122, 0.1504, 0.2794, 0.5656], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GLTP.gap.json b/pfam_gap_rates/GLTP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd350eba065da1c1d078fab835c0945d665d435f
--- /dev/null
+++ b/pfam_gap_rates/GLTP.gap.json
@@ -0,0 +1 @@
+{"family": "GLTP", "n_seqs": 682, "length": 163, "gap_rates": [0.5146627565982405, 0.3533724340175953, 0.2126099706744868, 0.187683284457478, 0.1744868035190616, 0.16715542521994134, 0.15835777126099707, 0.15835777126099707, 0.15689149560117302, 0.15689149560117302, 0.15249266862170088, 0.1466275659824047, 0.1466275659824047, 0.14222873900293256, 0.14222873900293256, 0.1378299120234604, 0.1348973607038123, 0.1217008797653959, 0.12023460410557185, 0.11143695014662756, 0.10850439882697947, 0.10557184750733138, 0.6642228739002932, 0.10410557184750734, 0.093841642228739, 0.09090909090909091, 0.08797653958944282, 0.08651026392961877, 0.08064516129032258, 0.08064516129032258, 0.07624633431085044, 0.0747800586510264, 0.0689149560117302, 0.06451612903225806, 0.06158357771260997, 0.05571847507331378, 0.054252199413489736, 0.051319648093841645, 0.05278592375366569, 0.060117302052785926, 0.051319648093841645, 0.054252199413489736, 0.054252199413489736, 0.05865102639296188, 0.15249266862170088, 0.15395894428152493, 0.8914956011730205, 0.20527859237536658, 0.18328445747800587, 0.9310850439882697, 0.9428152492668622, 0.9354838709677419, 0.9296187683284457, 0.06304985337243402, 0.06304985337243402, 0.045454545454545456, 0.04105571847507331, 0.04105571847507331, 0.039589442815249266, 0.03812316715542522, 0.03812316715542522, 0.03812316715542522, 0.036656891495601175, 0.036656891495601175, 0.036656891495601175, 0.03812316715542522, 0.045454545454545456, 0.05718475073313783, 0.27712609970674484, 0.28152492668621704, 0.28005865102639294, 0.2727272727272727, 0.3387096774193548, 0.9017595307917888, 0.7243401759530792, 0.873900293255132, 0.9369501466275659, 0.8885630498533724, 0.8519061583577713, 0.530791788856305, 0.0747800586510264, 0.05571847507331378, 0.03812316715542522, 0.03812316715542522, 0.039589442815249266, 0.039589442815249266, 0.03812316715542522, 0.03812316715542522, 0.03812316715542522, 0.03812316715542522, 0.039589442815249266, 0.03812316715542522, 0.04105571847507331, 0.04838709677419355, 0.04985337243401759, 0.04838709677419355, 0.04985337243401759, 0.04985337243401759, 0.051319648093841645, 0.05278592375366569, 0.051319648093841645, 0.05278592375366569, 0.04985337243401759, 0.04985337243401759, 0.04985337243401759, 0.05278592375366569, 0.08211143695014662, 0.06158357771260997, 0.06304985337243402, 0.07624633431085044, 0.8387096774193549, 0.9296187683284457, 0.9428152492668622, 0.9134897360703812, 0.8401759530791789, 0.8504398826979472, 0.6774193548387096, 0.8870967741935484, 0.13049853372434017, 0.054252199413489736, 0.0469208211143695, 0.04398826979472141, 0.04398826979472141, 0.04398826979472141, 0.04398826979472141, 0.04398826979472141, 0.04398826979472141, 0.045454545454545456, 0.045454545454545456, 0.0469208211143695, 0.0469208211143695, 0.0469208211143695, 0.04838709677419355, 0.04838709677419355, 0.051319648093841645, 0.051319648093841645, 0.051319648093841645, 0.051319648093841645, 0.054252199413489736, 0.054252199413489736, 0.054252199413489736, 0.05571847507331378, 0.054252199413489736, 0.054252199413489736, 0.054252199413489736, 0.05718475073313783, 0.05865102639296188, 0.060117302052785926, 0.06744868035190615, 0.07331378299120235, 0.07771260997067449, 0.07771260997067449, 0.08064516129032258, 0.08211143695014662, 0.08357771260997067, 0.08504398826979472, 0.09090909090909091, 0.09237536656891496, 0.0967741935483871, 0.10997067448680352, 0.12609970674486803, 0.14076246334310852, 0.3944281524926686], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GPCR_chapero_1.gap.json b/pfam_gap_rates/GPCR_chapero_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b04d76636944f710948c654e758502eefe500bce
--- /dev/null
+++ b/pfam_gap_rates/GPCR_chapero_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GPDPase_memb.gap.json b/pfam_gap_rates/GPDPase_memb.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5aa029a93435f386d9605f91b487ff70a2f5dce
--- /dev/null
+++ b/pfam_gap_rates/GPDPase_memb.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GYD.gap.json b/pfam_gap_rates/GYD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..358c0f800b92e99801b3c71b4e8f395cc95d35db
--- /dev/null
+++ b/pfam_gap_rates/GYD.gap.json
@@ -0,0 +1 @@
+{"family": "GYD", "n_seqs": 184, "length": 94, "gap_rates": [0.11956521739130435, 0.09782608695652174, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.05434782608695652, 0.05434782608695652, 0.04891304347826087, 0.04891304347826087, 0.043478260869565216, 0.043478260869565216, 0.04891304347826087, 0.043478260869565216, 0.8315217391304348, 0.03804347826086957, 0.04891304347826087, 0.09239130434782608, 0.04891304347826087, 0.02717391304347826, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.016304347826086956, 0.016304347826086956, 0.5217391304347826, 0.010869565217391304, 0.005434782608695652, 0.005434782608695652, 0.8586956521739131, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.010869565217391304, 0.005434782608695652, 0.0, 0.0, 0.005434782608695652, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02717391304347826, 0.0, 0.0, 0.005434782608695652, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.010869565217391304, 0.04891304347826087, 0.005434782608695652, 0.0, 0.010869565217391304, 0.8206521739130435, 0.010869565217391304, 0.010869565217391304, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.021739130434782608, 0.02717391304347826, 0.02717391304347826, 0.04891304347826087, 0.08152173913043478, 0.16304347826086957, 0.30978260869565216, 0.782608695652174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gal-3-0_sulfotr.gap.json b/pfam_gap_rates/Gal-3-0_sulfotr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2fa0ade13ea9596e7d4563309aec5938f62e8f5a
--- /dev/null
+++ b/pfam_gap_rates/Gal-3-0_sulfotr.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Gal_Lectin.gap.json b/pfam_gap_rates/Gal_Lectin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df909a18672e9c2e8c13c0df950504c16f5b7cb8
--- /dev/null
+++ b/pfam_gap_rates/Gal_Lectin.gap.json
@@ -0,0 +1 @@
+{"family": "Gal_Lectin", "n_seqs": 1216, "length": 98, "gap_rates": [0.28125, 0.13815789473684212, 0.11019736842105263, 0.11266447368421052, 0.9276315789473685, 0.1118421052631579, 0.09457236842105263, 0.09539473684210527, 0.09786184210526316, 0.07236842105263158, 0.07072368421052631, 0.6603618421052632, 0.06990131578947369, 0.06990131578947369, 0.06743421052631579, 0.06578947368421052, 0.06414473684210527, 0.0625, 0.0625, 0.06332236842105263, 0.06414473684210527, 0.8758223684210527, 0.8404605263157895, 0.0649671052631579, 0.0649671052631579, 0.3848684210526316, 0.07648026315789473, 0.0912828947368421, 0.7582236842105263, 0.8519736842105263, 0.928453947368421, 0.9120065789473685, 0.819078947368421, 0.7302631578947368, 0.4375, 0.8914473684210527, 0.8149671052631579, 0.12911184210526316, 0.09950657894736842, 0.08552631578947369, 0.08388157894736842, 0.07894736842105263, 0.07483552631578948, 0.07236842105263158, 0.3717105263157895, 0.944078947368421, 0.9449013157894737, 0.944078947368421, 0.04194078947368421, 0.03700657894736842, 0.04111842105263158, 0.13075657894736842, 0.06332236842105263, 0.9342105263157895, 0.027960526315789474, 0.023848684210526317, 0.02055921052631579, 0.022203947368421052, 0.018092105263157895, 0.027138157894736843, 0.01644736842105263, 0.022203947368421052, 0.023848684210526317, 0.028782894736842105, 0.029605263157894735, 0.029605263157894735, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03618421052631579, 0.03536184210526316, 0.03453947368421053, 0.03618421052631579, 0.039473684210526314, 0.04111842105263158, 0.04029605263157895, 0.5567434210526315, 0.05263157894736842, 0.05016447368421053, 0.9473684210526315, 0.05016447368421053, 0.049342105263157895, 0.8462171052631579, 0.05838815789473684, 0.0625, 0.05921052631578947, 0.06085526315789474, 0.05838815789473684, 0.06085526315789474, 0.061677631578947366, 0.0625, 0.06414473684210527, 0.06661184210526316, 0.06907894736842106, 0.08141447368421052, 0.08141447368421052], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gal_mutarotas_2.gap.json b/pfam_gap_rates/Gal_mutarotas_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b6fec5a8ae88c68f30769b386e59bfa6faadd26
--- /dev/null
+++ b/pfam_gap_rates/Gal_mutarotas_2.gap.json
@@ -0,0 +1 @@
+{"family": "Gal_mutarotas_2", "n_seqs": 1638, "length": 83, "gap_rates": [0.71001221001221, 0.28266178266178266, 0.09157509157509157, 0.03907203907203907, 0.013431013431013432, 0.01221001221001221, 0.01221001221001221, 0.01221001221001221, 0.0115995115995116, 0.014041514041514042, 0.9334554334554335, 0.009768009768009768, 0.01282051282051282, 0.9462759462759462, 0.009157509157509158, 0.009768009768009768, 0.009157509157509158, 0.008547008547008548, 0.006105006105006105, 0.004273504273504274, 0.002442002442002442, 0.6831501831501832, 0.7728937728937729, 0.8632478632478633, 0.8778998778998779, 0.8888888888888888, 0.8748473748473748, 0.8492063492063492, 0.746031746031746, 0.6336996336996337, 0.007326007326007326, 0.007936507936507936, 0.007936507936507936, 0.006715506715506716, 0.006715506715506716, 0.0018315018315018315, 0.001221001221001221, 0.017704517704517704, 0.018315018315018316, 0.020757020757020756, 0.028083028083028084, 0.17155067155067155, 0.18864468864468864, 0.19413919413919414, 0.18437118437118438, 0.44017094017094016, 0.26556776556776557, 0.1575091575091575, 0.007326007326007326, 0.006715506715506716, 0.0030525030525030525, 0.001221001221001221, 0.0006105006105006105, 0.0018315018315018315, 0.0018315018315018315, 0.002442002442002442, 0.002442002442002442, 0.002442002442002442, 0.002442002442002442, 0.2625152625152625, 0.2948717948717949, 0.8656898656898657, 0.942002442002442, 0.9328449328449329, 0.6843711843711844, 0.2673992673992674, 0.007936507936507936, 0.01282051282051282, 0.03907203907203907, 0.01282051282051282, 0.0115995115995116, 0.01221001221001221, 0.013431013431013432, 0.015873015873015872, 0.017094017094017096, 0.018925518925518924, 0.023809523809523808, 0.03235653235653236, 0.08058608058608059, 0.11721611721611722, 0.2490842490842491, 0.33943833943833945, 0.539072039072039], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GerE.gap.json b/pfam_gap_rates/GerE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..977ac5f8d99b71ab095e3743ad717946b877e686
--- /dev/null
+++ b/pfam_gap_rates/GerE.gap.json
@@ -0,0 +1 @@
+{"family": "GerE", "n_seqs": 5000, "length": 56, "gap_rates": [0.3182, 0.0584, 0.0308, 0.026, 0.0236, 0.0186, 0.0154, 0.0134, 0.011, 0.009, 0.0072, 0.0066, 0.006, 0.006, 0.005, 0.0046, 0.003, 0.0022, 0.0022, 0.0022, 0.0016, 0.0014, 0.0014, 0.0014, 0.0012, 0.0008, 0.0008, 0.0006, 0.0004, 0.0006, 0.0004, 0.0004, 0.0004, 0.001, 0.0014, 0.002, 0.0024, 0.0032, 0.0038, 0.0034, 0.0056, 0.0072, 0.0084, 0.0162, 0.0202, 0.0282, 0.047, 0.058, 0.0644, 0.0722, 0.0774, 0.086, 0.1224, 0.1884, 0.3422, 0.5632], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GidB.gap.json b/pfam_gap_rates/GidB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee5769f07792a6949806e2d104de468869becb5e
--- /dev/null
+++ b/pfam_gap_rates/GidB.gap.json
@@ -0,0 +1 @@
+{"family": "GidB", "n_seqs": 1934, "length": 202, "gap_rates": [0.687693898655636, 0.48448810754912097, 0.2693898655635988, 0.14891416752843847, 0.08738366080661841, 0.07445708376421924, 0.0703205791106515, 0.0672182006204757, 0.06463288521199587, 0.06204756980351603, 0.0594622543950362, 0.05894519131334023, 0.05894519131334023, 0.057911065149948295, 0.055842812823164424, 0.05429162357807653, 0.05429162357807653, 0.052740434332988625, 0.04705274043433299, 0.045501551189245086, 0.04395036194415719, 0.04343329886246122, 0.042916235780765255, 0.042916235780765255, 0.04395036194415719, 0.04653567735263702, 0.04963805584281282, 0.042916235780765255, 0.04239917269906929, 0.042916235780765255, 0.042916235780765255, 0.04188210961737332, 0.05480868665977249, 0.04033092037228542, 0.03929679420889348, 0.037745604963805586, 0.03671147880041365, 0.035677352637021716, 0.03516028955532575, 0.03412616339193381, 0.03412616339193381, 0.03257497414684592, 0.03464322647362978, 0.03360910031023785, 0.03205791106514995, 0.03154084798345398, 0.03257497414684592, 0.03205791106514995, 0.03257497414684592, 0.38055842812823165, 0.8407445708376422, 0.9048603929679421, 0.9389865563598759, 0.9270941054808687, 0.8691830403309204, 0.688210961737332, 0.14115822130299896, 0.9322647362978284, 0.7425025853154085, 0.027921406411582212, 0.025336091003102378, 0.025336091003102378, 0.025853154084798345, 0.025853154084798345, 0.025853154084798345, 0.025853154084798345, 0.026370217166494313, 0.02688728024819028, 0.025336091003102378, 0.025336091003102378, 0.025336091003102378, 0.025336091003102378, 0.025336091003102378, 0.02481902792140641, 0.02481902792140641, 0.02481902792140641, 0.024301964839710446, 0.027404343329886244, 0.031023784901758014, 0.031023784901758014, 0.03671147880041365, 0.02843846949327818, 0.9472595656670114, 0.9431230610134437, 0.033092037228541885, 0.024301964839710446, 0.02326783867631851, 0.022750775594622543, 0.022750775594622543, 0.022750775594622543, 0.02326783867631851, 0.022750775594622543, 0.022233712512926575, 0.022233712512926575, 0.02326783867631851, 0.02326783867631851, 0.02326783867631851, 0.02326783867631851, 0.023784901758014478, 0.023784901758014478, 0.024301964839710446, 0.02481902792140641, 0.02481902792140641, 0.024301964839710446, 0.02481902792140641, 0.02326783867631851, 0.022750775594622543, 0.023784901758014478, 0.16442605997931747, 0.025853154084798345, 0.02481902792140641, 0.024301964839710446, 0.023784901758014478, 0.02481902792140641, 0.025336091003102378, 0.026370217166494313, 0.026370217166494313, 0.027404343329886244, 0.027404343329886244, 0.500517063081696, 0.6483971044467425, 0.5879007238883144, 0.4560496380558428, 0.2781799379524302, 0.15408479834539815, 0.028955532574974147, 0.02998965873836608, 0.027921406411582212, 0.027921406411582212, 0.027404343329886244, 0.027921406411582212, 0.02688728024819028, 0.02688728024819028, 0.026370217166494313, 0.026370217166494313, 0.026370217166494313, 0.026370217166494313, 0.027404343329886244, 0.02843846949327818, 0.02843846949327818, 0.02843846949327818, 0.02843846949327818, 0.02843846949327818, 0.02843846949327818, 0.02843846949327818, 0.027921406411582212, 0.027921406411582212, 0.027921406411582212, 0.027921406411582212, 0.02843846949327818, 0.03981385729058945, 0.037745604963805586, 0.03671147880041365, 0.037745604963805586, 0.04033092037228542, 0.046018614270941054, 0.048086866597724924, 0.9472595656670114, 0.9493278179937953, 0.9472595656670114, 0.9472595656670114, 0.04912099276111686, 0.05015511892450879, 0.05118924508790072, 0.05894519131334023, 0.0641158221302999, 0.0796277145811789, 0.07704239917269907, 0.07600827300930714, 0.08066184074457083, 0.08376421923474664, 0.08790072388831438, 0.09100310237849017, 0.09358841778697001, 0.09617373319544985, 0.10599793174767322, 0.12306101344364012, 0.13650465356773525, 0.1499482936918304, 0.1639089968976215, 0.17735263702171664, 0.19493278179937953, 0.21458117890382628, 0.23526370217166495, 0.2890382626680455, 0.3081695966907963, 0.3345398138572906, 0.37125129265770423, 0.4027921406411582, 0.4446742502585315, 0.48448810754912097, 0.5305067218200621, 0.5682523267838676, 0.6049638055842813, 0.7678386763185109, 0.7781799379524302, 0.8252326783867632, 0.9089968976215098, 0.8795243019648397, 0.889348500517063, 0.8986556359875905, 0.9436401240951396], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GlcNAc.gap.json b/pfam_gap_rates/GlcNAc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca0160e66bb3b585245535b00595e553f5195f23
--- /dev/null
+++ b/pfam_gap_rates/GlcNAc.gap.json
@@ -0,0 +1 @@
+{"family": "GlcNAc", "n_seqs": 297, "length": 395, "gap_rates": [0.6632996632996633, 0.569023569023569, 0.5589225589225589, 0.5488215488215489, 0.5420875420875421, 0.5420875420875421, 0.5420875420875421, 0.5420875420875421, 0.5420875420875421, 0.5420875420875421, 0.5420875420875421, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.5286195286195287, 0.5286195286195287, 0.5286195286195287, 0.5286195286195287, 0.5286195286195287, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.531986531986532, 0.5353535353535354, 0.5353535353535354, 0.5420875420875421, 0.5420875420875421, 0.5420875420875421, 0.5521885521885522, 0.569023569023569, 0.9461279461279462, 0.5993265993265994, 0.6060606060606061, 0.6195286195286195, 0.632996632996633, 0.6599326599326599, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GlnE.gap.json b/pfam_gap_rates/GlnE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb8a566351283e01552911238bb33d3020737031
--- /dev/null
+++ b/pfam_gap_rates/GlnE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glucokinase.gap.json b/pfam_gap_rates/Glucokinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1f08ec5a915d4f8eef90f6cf6cfc84225ba24d7
--- /dev/null
+++ b/pfam_gap_rates/Glucokinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glucosamine_iso.gap.json b/pfam_gap_rates/Glucosamine_iso.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8202d275be228dcb29f62961f50a04972ab8183f
--- /dev/null
+++ b/pfam_gap_rates/Glucosamine_iso.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Gly_rich.gap.json b/pfam_gap_rates/Gly_rich.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab3962dbb7bda0a4e421b63f4ef0aff711ca664f
--- /dev/null
+++ b/pfam_gap_rates/Gly_rich.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_130.gap.json b/pfam_gap_rates/Glyco_hydro_130.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de320b7b1ce12fd7128b3ae0dabc30d79c4bdc31
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_130.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_42.gap.json b/pfam_gap_rates/Glyco_hydro_42.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a53a79e53344b2883b8f774f3914657c6693ec1
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_42.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_65C.gap.json b/pfam_gap_rates/Glyco_hydro_65C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6f9206b9b74992cbde08d0e025a2b46cee18627
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_65C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_71.gap.json b/pfam_gap_rates/Glyco_hydro_71.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..207becd6b75bf9b7b8dadacca5d1fb203ed923e6
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_71.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_tran_28_C.gap.json b/pfam_gap_rates/Glyco_tran_28_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a65876cd1da3852afa1a72320ca648c9fb4d5b2
--- /dev/null
+++ b/pfam_gap_rates/Glyco_tran_28_C.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_tran_28_C", "n_seqs": 3785, "length": 179, "gap_rates": [0.6177014531043593, 0.2766182298546896, 0.23830911492734477, 0.22721268163804492, 0.21453104359313077, 0.202113606340819, 0.19735799207397622, 0.20158520475561426, 0.20052840158520477, 0.19682959048877147, 0.19418758256274768, 0.19392338177014531, 0.2393659180977543, 0.2, 0.19788639365918098, 0.19418758256274768, 0.18652575957727874, 0.1833553500660502, 0.18256274768824307, 0.18044914134742404, 0.18124174372523116, 0.17780713342140025, 0.176221928665786, 0.1725231175693527, 0.17093791281373844, 0.16961690885072656, 0.17357992073976222, 0.18837516512549538, 0.8486129458388375, 0.657331571994716, 0.6068692206076618, 0.4856010568031704, 0.1595772787318362, 0.12866578599735798, 0.11492734478203434, 0.11096433289299867, 0.10805812417437252, 0.10568031704095113, 0.10515191545574637, 0.10488771466314399, 0.12073976221928666, 0.11889035667107001, 0.8737120211360634, 0.11651254953764861, 0.11492734478203434, 0.10858652575957728, 0.10330250990752972, 0.10145310435931308, 0.09986789960369881, 0.09907529722589167, 0.13130779392338177, 0.8737120211360634, 0.9357992073976222, 0.7667107001321004, 0.11492734478203434, 0.12866578599735798, 0.1273447820343461, 0.13844121532364598, 0.30198150594451784, 0.7421400264200793, 0.861558784676354, 0.9276089828269485, 0.9062087186261559, 0.8177014531043593, 0.6665785997357992, 0.2512549537648613, 0.20898282694848083, 0.1619550858652576, 0.11889035667107001, 0.09458388375165125, 0.071334214002642, 0.05627476882430647, 0.05970937912813738, 0.043857331571994715, 0.03989431968295905, 0.0964332892998679, 0.035402906208718624, 0.027476882430647293, 0.020871862615587846, 0.01453104359313078, 0.011096433289299868, 0.010303830911492734, 0.008982826948480845, 0.007926023778071334, 0.0066050198150594455, 0.005284015852047556, 0.0047556142668428005, 0.004227212681638045, 0.003963011889035667, 0.013210039630118891, 0.0034346103038309117, 0.003963011889035667, 0.027476882430647293, 0.011360634081902245, 0.005548216644649934, 0.010039630118890357, 0.004227212681638045, 0.004227212681638045, 0.0047556142668428005, 0.005019815059445178, 0.005284015852047556, 0.005548216644649934, 0.005548216644649934, 0.00607661822985469, 0.006340819022457068, 0.009247027741083224, 0.01083223249669749, 0.017173051519154558, 0.043593130779392336, 0.04782034346103038, 0.041215323645970935, 0.043064729194187586, 0.04597093791281374, 0.3294583883751651, 0.29431968295904887, 0.3785997357992074, 0.9347424042272127, 0.26605019815059444, 0.055217965653896965, 0.05442536327608983, 0.05099075297225892, 0.052311756935270806, 0.05389696169088507, 0.054953764861294586, 0.05468956406869221, 0.05680317040951123, 0.05706737120211361, 0.058388375165125496, 0.059445178335535004, 0.06446499339498019, 0.0665785997357992, 0.07080581241743725, 0.07239101717305152, 0.08058124174372523, 0.0892998678996037, 0.0977542932628798, 0.10885072655217966, 0.1202113606340819, 0.13474240422721268, 0.13474240422721268, 0.13844121532364598, 0.3202113606340819, 0.19445178335535007, 0.17886393659180977, 0.1701453104359313, 0.1453104359313078, 0.14795244385733158, 0.15402906208718625, 0.16036988110964334, 0.16248348745046234, 0.16829590488771468, 0.17675033025099074, 0.1891677675033025, 0.20422721268163804, 0.21585204755614268, 0.2285336856010568, 0.2393659180977543, 0.259445178335535, 0.2940554821664465, 0.32919418758256275, 0.33157199471598414, 0.33606340819022457, 0.3532364597093791, 0.3690885072655218, 0.3857331571994716, 0.40766182298546894, 0.4882430647291942, 0.940554821664465, 0.5656538969616909, 0.5785997357992074, 0.5841479524438573, 0.6013210039630119, 0.6277410832232496, 0.657331571994716, 0.6745046235138705, 0.7019815059445178, 0.7350066050198151, 0.7854689564068692, 0.861558784676354], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_10.gap.json b/pfam_gap_rates/Glyco_transf_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb491e10d933a58afc2d27e38f12138ba5c3f23d
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_10.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_transf_10", "n_seqs": 1152, "length": 223, "gap_rates": [0.4861111111111111, 0.4288194444444444, 0.3524305555555556, 0.2682291666666667, 0.20225694444444445, 0.17708333333333334, 0.1701388888888889, 0.16666666666666666, 0.1640625, 0.15885416666666666, 0.15625, 0.1545138888888889, 0.1519097222222222, 0.14583333333333334, 0.14322916666666666, 0.8333333333333334, 0.8585069444444444, 0.7916666666666666, 0.22135416666666666, 0.18489583333333334, 0.12413194444444445, 0.12065972222222222, 0.1189236111111111, 0.11805555555555555, 0.1171875, 0.11458333333333333, 0.11371527777777778, 0.11371527777777778, 0.11197916666666667, 0.109375, 0.10850694444444445, 0.8159722222222222, 0.10503472222222222, 0.10503472222222222, 0.10069444444444445, 0.10069444444444445, 0.09809027777777778, 0.10069444444444445, 0.0998263888888889, 0.0998263888888889, 0.10590277777777778, 0.1345486111111111, 0.140625, 0.12239583333333333, 0.15625, 0.4296875, 0.6571180555555556, 0.7378472222222222, 0.7873263888888888, 0.8446180555555556, 0.9045138888888888, 0.9366319444444444, 0.9444444444444444, 0.9175347222222222, 0.8845486111111112, 0.8237847222222222, 0.7612847222222222, 0.7135416666666666, 0.5460069444444444, 0.3836805555555556, 0.21614583333333334, 0.1293402777777778, 0.11631944444444445, 0.1032986111111111, 0.09722222222222222, 0.08940972222222222, 0.0876736111111111, 0.078125, 0.07465277777777778, 0.0720486111111111, 0.06684027777777778, 0.06336805555555555, 0.06163194444444445, 0.059895833333333336, 0.059895833333333336, 0.059027777777777776, 0.058159722222222224, 0.05555555555555555, 0.05381944444444445, 0.052083333333333336, 0.052083333333333336, 0.051215277777777776, 0.051215277777777776, 0.8862847222222222, 0.051215277777777776, 0.050347222222222224, 0.051215277777777776, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.051215277777777776, 0.052083333333333336, 0.052083333333333336, 0.05295138888888889, 0.05381944444444445, 0.6814236111111112, 0.052083333333333336, 0.057291666666666664, 0.058159722222222224, 0.05555555555555555, 0.06076388888888889, 0.052083333333333336, 0.04600694444444445, 0.04600694444444445, 0.049479166666666664, 0.050347222222222224, 0.051215277777777776, 0.051215277777777776, 0.16319444444444445, 0.1597222222222222, 0.0546875, 0.5234375, 0.4861111111111111, 0.059027777777777776, 0.058159722222222224, 0.058159722222222224, 0.058159722222222224, 0.06597222222222222, 0.059027777777777776, 0.059895833333333336, 0.9461805555555556, 0.06770833333333333, 0.9409722222222222, 0.06076388888888889, 0.06076388888888889, 0.06076388888888889, 0.0642361111111111, 0.06684027777777778, 0.06684027777777778, 0.07291666666666667, 0.07725694444444445, 0.08333333333333333, 0.1484375, 0.09722222222222222, 0.09635416666666667, 0.0954861111111111, 0.09461805555555555, 0.09722222222222222, 0.10069444444444445, 0.09895833333333333, 0.10243055555555555, 0.10416666666666667, 0.1076388888888889, 0.11284722222222222, 0.11284722222222222, 0.125, 0.1362847222222222, 0.13194444444444445, 0.1293402777777778, 0.13368055555555555, 0.13194444444444445, 0.1310763888888889, 0.1362847222222222, 0.1388888888888889, 0.1579861111111111, 0.1675347222222222, 0.1753472222222222, 0.1892361111111111, 0.19444444444444445, 0.20572916666666666, 0.21180555555555555, 0.2144097222222222, 0.9392361111111112, 0.9027777777777778, 0.23350694444444445, 0.2387152777777778, 0.7421875, 0.7907986111111112, 0.8958333333333334, 0.9296875, 0.9444444444444444, 0.9053819444444444, 0.8177083333333334, 0.7777777777777778, 0.7092013888888888, 0.3845486111111111, 0.9444444444444444, 0.5121527777777778, 0.4713541666666667, 0.4305555555555556, 0.3958333333333333, 0.3480902777777778, 0.3576388888888889, 0.3611111111111111, 0.2838541666666667, 0.8472222222222222, 0.8784722222222222, 0.8940972222222222, 0.9131944444444444, 0.9383680555555556, 0.9435763888888888, 0.9244791666666666, 0.8984375, 0.8871527777777778, 0.8680555555555556, 0.8394097222222222, 0.2803819444444444, 0.2786458333333333, 0.2821180555555556, 0.2934027777777778, 0.296875, 0.296875, 0.2977430555555556, 0.3064236111111111, 0.3211805555555556, 0.5286458333333334, 0.4184027777777778, 0.9305555555555556, 0.9131944444444444, 0.4592013888888889, 0.4782986111111111, 0.5069444444444444, 0.5243055555555556, 0.5329861111111112, 0.5572916666666666, 0.5642361111111112, 0.5677083333333334, 0.578125, 0.5842013888888888, 0.5972222222222222, 0.6059027777777778, 0.6145833333333334, 0.6597222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_18.gap.json b/pfam_gap_rates/Glyco_transf_18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c83ad245891a432324e4ecbd4cf5c58a187c4b09
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_18.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_21.gap.json b/pfam_gap_rates/Glyco_transf_21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d849b96bb6de932ef4c6cd89b85694e97c8bdf34
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_21.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_29.gap.json b/pfam_gap_rates/Glyco_transf_29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c4bd7836bdebdccde3757bc6ab6c03db705f601
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_29.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_9.gap.json b/pfam_gap_rates/Glyco_transf_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b8136fa5b6411eca0e90a13294003500e604884
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_90.gap.json b/pfam_gap_rates/Glyco_transf_90.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dcd0c3f1f17623d3cea5ac85a19e54870e2908f3
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_90.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glycolipid_bind.gap.json b/pfam_gap_rates/Glycolipid_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5fdb8af1ba6651b1f632ed684cf52aa5e0714636
--- /dev/null
+++ b/pfam_gap_rates/Glycolipid_bind.gap.json
@@ -0,0 +1 @@
+{"family": "Glycolipid_bind", "n_seqs": 128, "length": 202, "gap_rates": [0.84375, 0.2890625, 0.1875, 0.171875, 0.171875, 0.171875, 0.171875, 0.171875, 0.8671875, 0.140625, 0.140625, 0.140625, 0.0859375, 0.09375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.078125, 0.0859375, 0.1484375, 0.125, 0.125, 0.109375, 0.0703125, 0.0703125, 0.0703125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0546875, 0.09375, 0.0625, 0.078125, 0.109375, 0.1171875, 0.234375, 0.125, 0.1015625, 0.78125, 0.703125, 0.046875, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.171875, 0.1484375, 0.1015625, 0.296875, 0.25, 0.203125, 0.0546875, 0.0546875, 0.0546875, 0.0390625, 0.0390625, 0.0390625, 0.0625, 0.0390625, 0.09375, 0.0390625, 0.046875, 0.0703125, 0.046875, 0.046875, 0.0390625, 0.0390625, 0.0390625, 0.3671875, 0.734375, 0.6875, 0.03125, 0.03125, 0.0234375, 0.0234375, 0.03125, 0.0390625, 0.03125, 0.921875, 0.921875, 0.921875, 0.921875, 0.921875, 0.9453125, 0.9296875, 0.921875, 0.921875, 0.921875, 0.921875, 0.921875, 0.03125, 0.03125, 0.0234375, 0.0234375, 0.0234375, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0234375, 0.0390625, 0.0234375, 0.015625, 0.015625, 0.015625, 0.0078125, 0.0078125, 0.625, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.015625, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.015625, 0.6953125, 0.71875, 0.5703125, 0.390625, 0.0234375, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.1484375, 0.515625, 0.921875, 0.46875, 0.140625, 0.140625, 0.0234375, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.0234375, 0.0234375, 0.0234375, 0.03125, 0.0546875, 0.0546875, 0.09375, 0.2109375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Goodbye.gap.json b/pfam_gap_rates/Goodbye.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ead91098ed6dd406d16865ec0b4eb48a64af5e3
--- /dev/null
+++ b/pfam_gap_rates/Goodbye.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Gpi16.gap.json b/pfam_gap_rates/Gpi16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab26935d091f60cc6e561612f807c7cc46cb133e
--- /dev/null
+++ b/pfam_gap_rates/Gpi16.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Guanylate_cyc.gap.json b/pfam_gap_rates/Guanylate_cyc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93a50660f33cfbaaf769a35c5d9b3a66b0ff0f11
--- /dev/null
+++ b/pfam_gap_rates/Guanylate_cyc.gap.json
@@ -0,0 +1 @@
+{"family": "Guanylate_cyc", "n_seqs": 5000, "length": 226, "gap_rates": [0.8168, 0.7138, 0.6272, 0.5308, 0.4236, 0.3114, 0.2578, 0.2156, 0.1696, 0.1458, 0.1352, 0.1176, 0.1096, 0.1082, 0.108, 0.1082, 0.1078, 0.1078, 0.1078, 0.1056, 0.1022, 0.1018, 0.0998, 0.102, 0.1004, 0.2116, 0.9036, 0.9316, 0.927, 0.8956, 0.107, 0.0972, 0.0914, 0.0878, 0.0866, 0.0848, 0.084, 0.083, 0.0816, 0.0812, 0.0806, 0.0796, 0.0796, 0.0796, 0.0796, 0.08, 0.0798, 0.08, 0.08, 0.08, 0.0796, 0.0802, 0.0822, 0.9196, 0.9274, 0.894, 0.082, 0.0804, 0.079, 0.0786, 0.08, 0.0828, 0.0818, 0.078, 0.0782, 0.0784, 0.079, 0.0752, 0.075, 0.0752, 0.0752, 0.0766, 0.0786, 0.0786, 0.7816, 0.8468, 0.8926, 0.9312, 0.9476, 0.9388, 0.9118, 0.8752, 0.816, 0.659, 0.2768, 0.2654, 0.2474, 0.1512, 0.128, 0.1238, 0.1182, 0.0864, 0.085, 0.0854, 0.086, 0.0848, 0.0846, 0.0828, 0.0858, 0.085, 0.0846, 0.0862, 0.0858, 0.091, 0.0942, 0.8804, 0.099, 0.098, 0.098, 0.0996, 0.101, 0.1042, 0.1384, 0.721, 0.8726, 0.8448, 0.6244, 0.1776, 0.8692, 0.8706, 0.8808, 0.8892, 0.896, 0.906, 0.9158, 0.9424, 0.9318, 0.9092, 0.904, 0.8934, 0.8842, 0.876, 0.87, 0.8692, 0.1222, 0.0988, 0.09, 0.0724, 0.068, 0.065, 0.064, 0.063, 0.0624, 0.0622, 0.0612, 0.0628, 0.0648, 0.0688, 0.0712, 0.0738, 0.0758, 0.0802, 0.0834, 0.2054, 0.6662, 0.1466, 0.1436, 0.1356, 0.1328, 0.1292, 0.1258, 0.0742, 0.0722, 0.072, 0.071, 0.0704, 0.0714, 0.0712, 0.0726, 0.0726, 0.0732, 0.074, 0.0744, 0.0738, 0.0782, 0.0824, 0.0822, 0.0832, 0.0866, 0.092, 0.0978, 0.1028, 0.1054, 0.1068, 0.1096, 0.9292, 0.921, 0.114, 0.1182, 0.1216, 0.1266, 0.1304, 0.1358, 0.1472, 0.1512, 0.1594, 0.8628, 0.9112, 0.6666, 0.5104, 0.2342, 0.2116, 0.2132, 0.2192, 0.2252, 0.2344, 0.2536, 0.267, 0.2894, 0.285, 0.2898, 0.296, 0.3008, 0.3078, 0.3302, 0.8832, 0.3772, 0.3814, 0.4006, 0.4252, 0.4598, 0.5046, 0.5506, 0.6138, 0.6704, 0.7816], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GxDLY.gap.json b/pfam_gap_rates/GxDLY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..278b16e14dfc76d4a5d05c020e0a5ec884284504
--- /dev/null
+++ b/pfam_gap_rates/GxDLY.gap.json
@@ -0,0 +1 @@
+{"family": "GxDLY", "n_seqs": 103, "length": 155, "gap_rates": [0.7669902912621359, 0.2524271844660194, 0.1650485436893204, 0.1650485436893204, 0.14563106796116504, 0.1262135922330097, 0.11650485436893204, 0.0970873786407767, 0.07766990291262135, 0.07766990291262135, 0.5922330097087378, 0.7572815533980582, 0.5728155339805825, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.0970873786407767, 0.21359223300970873, 0.9320388349514563, 0.6699029126213593, 0.06796116504854369, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.06796116504854369, 0.05825242718446602, 0.04854368932038835, 0.04854368932038835, 0.05825242718446602, 0.05825242718446602, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.038834951456310676, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.8252427184466019, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.019417475728155338, 0.019417475728155338, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.39805825242718446, 0.02912621359223301, 0.05825242718446602, 0.04854368932038835, 0.07766990291262135, 0.02912621359223301, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.7669902912621359, 0.8252427184466019, 0.7087378640776699, 0.34951456310679613, 0.24271844660194175, 0.02912621359223301, 0.02912621359223301, 0.038834951456310676, 0.02912621359223301, 0.04854368932038835, 0.02912621359223301, 0.02912621359223301, 0.06796116504854369, 0.038834951456310676, 0.038834951456310676, 0.05825242718446602, 0.10679611650485436, 0.038834951456310676, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.038834951456310676, 0.038834951456310676, 0.06796116504854369, 0.1553398058252427, 0.5145631067961165], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HAD.gap.json b/pfam_gap_rates/HAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0541d55bd8aa62ec284b98e755dfbf0280d9d535
--- /dev/null
+++ b/pfam_gap_rates/HAD.gap.json
@@ -0,0 +1 @@
+{"family": "HAD", "n_seqs": 3327, "length": 222, "gap_rates": [0.3925458370904719, 0.13826269912834385, 0.10159302675082657, 0.09528103396453261, 0.0931770363691013, 0.09107303877366997, 0.08926961226330027, 0.08926961226330027, 0.0880673279230538, 0.0880673279230538, 0.08776675683799219, 0.08716561466786896, 0.09738503155996393, 0.10610159302675083, 0.10489930868650436, 0.10459873760144274, 0.9092275323113916, 0.9407874962428614, 0.9287646528403968, 0.8587315900210399, 0.08957018334836189, 0.09588217613465584, 0.0931770363691013, 0.09197475202885483, 0.42831379621280435, 0.16321009918845808, 0.1587015329125338, 0.1496844003606853, 0.1496844003606853, 0.3465584610760445, 0.35287045386233845, 0.3802224226029456, 0.3886384129846709, 0.4667868951006913, 0.9492034866245868, 0.9359783588818755, 0.1674180943793207, 0.1196272918545236, 0.10670273519687407, 0.09618274721971747, 0.09107303877366997, 0.08746618575293057, 0.08686504358280733, 0.941088067327923, 0.0967838893898407, 0.09618274721971747, 0.09948902915539524, 0.10279531109107304, 0.10610159302675083, 0.9011121130147279, 0.9386834986474302, 0.9233543733092876, 0.8578298767658551, 0.4688908926961226, 0.4030658250676285, 0.3294259092275323, 0.12233243162007815, 0.11842500751427712, 0.11241358581304478, 0.11662158100390742, 0.26570483919446947, 0.2392545837090472, 0.21160204388337842, 0.16831980763450555, 0.1550946798917944, 0.13315299068229636, 0.10069131349564171, 0.09407874962428614, 0.08145476405169823, 0.07544334235046589, 0.07484220018034266, 0.07303877366997295, 0.0634204989480012, 0.062218214607754736, 0.06071535918244665, 0.06011421701232342, 0.0616170724376315, 0.5912233243162007, 0.08055305079651337, 0.08596333032762249, 0.07454162909528103, 0.06372107003306282, 0.05199879771565975, 0.04839194469492035, 0.0456868049293658, 0.044785091674180946, 0.04418394950405771, 0.042981665163811245, 0.042981665163811245, 0.9230538022242261, 0.4718966035467388, 0.474902314397355, 0.4538623384430418, 0.4379320709347761, 0.41839495040577096, 0.42019837691614065, 0.42530808536218817, 0.8824767057409078, 0.9335737902013826, 0.9002103997595431, 0.8587315900210399, 0.4084761045987376, 0.05410279531109107, 0.25067628494138866, 0.014427412082957619, 0.9206492335437331, 0.9125338142470695, 0.005710850616170725, 0.004508566275924256, 0.004207995190862639, 0.0033062819356777877, 0.0024045686804929365, 0.0024045686804929365, 0.0021039975954313195, 0.11902614968440037, 0.0829576194770063, 0.0934776074541629, 0.010820559062218215, 0.0063119927862939585, 0.01562969642320409, 0.016831980763450556, 0.02043883378418996, 0.020739404869251576, 0.016230838593327322, 0.0015028554253080854, 0.0012022843402464682, 0.0012022843402464682, 0.0012022843402464682, 0.0012022843402464682, 0.0015028554253080854, 0.0015028554253080854, 0.0018034265103697023, 0.0021039975954313195, 0.0021039975954313195, 0.0021039975954313195, 0.002705139765554554, 0.0024045686804929365, 0.0024045686804929365, 0.8551247370003006, 0.018935978358881875, 0.012022843402464683, 0.011121130147279832, 0.006011421701232342, 0.8013225127742711, 0.9419897805831079, 0.9281635106702735, 0.7397054403366397, 0.09798617373008717, 0.07514277126540427, 0.06462278328824766, 0.06011421701232342, 0.0066125638713555755, 0.005710850616170725, 0.0063119927862939585, 0.09407874962428614, 0.10610159302675083, 0.10820559062218214, 0.11632100991884581, 0.12954613766155695, 0.1337541328524196, 0.6348061316501352, 0.8935978358881875, 0.9353772167117523, 0.9492034866245868, 0.9098286744815148, 0.8349864743011722, 0.14878268710550044, 0.047790802524797116, 0.0492936579501052, 0.0405770964833183, 0.03967538322813345, 0.03486624586714758, 0.9311692215208897, 0.9107303877366997, 0.6955214908325819, 0.632702134054704, 0.11301472798316801, 0.053802224226029455, 0.043883378418996095, 0.042981665163811245, 0.03666967237751728, 0.035467388037270814, 0.03757138563270213, 0.0405770964833183, 0.16621581003907424, 0.11121130147279831, 0.09558160504959423, 0.08566275924256087, 0.03005710850616171, 0.02765253982566877, 0.027953110910730387, 0.029756537421100092, 0.029756537421100092, 0.631800420799519, 0.5930267508265705, 0.20348662458671476, 0.1827472197174632, 0.15719867748722574, 0.12173128944995491, 0.12413585813044785, 0.12593928464081755, 0.11842500751427712, 0.18905921250375715, 0.20138262699128343, 0.2536819957920048, 0.250375713856327, 0.941088067327923, 0.09227532311391644, 0.05199879771565975, 0.039374812143071834, 0.03847309888788698, 0.03907424105801022, 0.039374812143071834, 0.03967538322813345, 0.0405770964833183, 0.04508566275924256, 0.046889089269612265, 0.054703937481214306, 0.07243763149984972, 0.1073038773669973, 0.1848512173128945, 0.6113615870153292], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HAND.gap.json b/pfam_gap_rates/HAND.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ade713b6b82b51be1167755ca42a44be408b66c1
--- /dev/null
+++ b/pfam_gap_rates/HAND.gap.json
@@ -0,0 +1 @@
+{"family": "HAND", "n_seqs": 359, "length": 119, "gap_rates": [0.41225626740947074, 0.298050139275766, 0.2924791086350975, 0.12256267409470752, 0.12256267409470752, 0.10584958217270195, 0.10306406685236769, 0.09749303621169916, 0.0947075208913649, 0.09749303621169916, 0.08913649025069638, 0.08635097493036212, 0.10027855153203342, 0.12813370473537605, 0.08913649025069638, 0.10027855153203342, 0.1392757660167131, 0.935933147632312, 0.6100278551532033, 0.5013927576601671, 0.38997214484679665, 0.052924791086350974, 0.04735376044568245, 0.03899721448467967, 0.03899721448467967, 0.03899721448467967, 0.06685236768802229, 0.03899721448467967, 0.03899721448467967, 0.03899721448467967, 0.036211699164345405, 0.03064066852367688, 0.03064066852367688, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.03064066852367688, 0.7994428969359332, 0.033426183844011144, 0.033426183844011144, 0.03064066852367688, 0.03064066852367688, 0.03064066852367688, 0.03064066852367688, 0.033426183844011144, 0.033426183844011144, 0.03064066852367688, 0.03064066852367688, 0.036211699164345405, 0.04735376044568245, 0.0584958217270195, 0.055710306406685235, 0.06128133704735376, 0.06128133704735376, 0.06406685236768803, 0.06963788300835655, 0.07242339832869081, 0.09749303621169916, 0.0807799442896936, 0.116991643454039, 0.08913649025069638, 0.11977715877437325, 0.12813370473537605, 0.14206128133704735, 0.1392757660167131, 0.233983286908078, 0.31197771587743733, 0.3871866295264624, 0.39275766016713093, 0.841225626740947, 0.44846796657381616, 0.7381615598885793, 0.7743732590529248, 0.7994428969359332, 0.8607242339832869, 0.8969359331476323, 0.8997214484679665, 0.8885793871866295, 0.8523676880222841, 0.7493036211699164, 0.4623955431754875, 0.3008356545961003, 0.13370473537604458, 0.12813370473537605, 0.12534818941504178, 0.12813370473537605, 0.12256267409470752, 0.13649025069637882, 0.14484679665738162, 0.18662952646239556, 0.19220055710306408, 0.19220055710306408, 0.19220055710306408, 0.1894150417827298, 0.1894150417827298, 0.1894150417827298, 0.19220055710306408, 0.19220055710306408, 0.19220055710306408, 0.1977715877437326, 0.20055710306406685, 0.20055710306406685, 0.20334261838440112, 0.20891364902506965, 0.20612813370473537, 0.20612813370473537, 0.20891364902506965, 0.21448467966573817, 0.21727019498607242, 0.2200557103064067, 0.21727019498607242, 0.2200557103064067, 0.22284122562674094, 0.22562674094707522, 0.27019498607242337, 0.3370473537604457], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HAS-barrel.gap.json b/pfam_gap_rates/HAS-barrel.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24c4dd2cb91d8664cfd86d7200415ef3cc819c17
--- /dev/null
+++ b/pfam_gap_rates/HAS-barrel.gap.json
@@ -0,0 +1 @@
+{"family": "HAS-barrel", "n_seqs": 110, "length": 121, "gap_rates": [0.44545454545454544, 0.03636363636363636, 0.03636363636363636, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.9090909090909091, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.13636363636363635, 0.14545454545454545, 0.41818181818181815, 0.8181818181818182, 0.8181818181818182, 0.43636363636363634, 0.4090909090909091, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9, 0.9181818181818182, 0.9272727272727272, 0.9090909090909091, 0.7181818181818181, 0.5636363636363636, 0.02727272727272727, 0.00909090909090909, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.18181818181818182, 0.20909090909090908, 0.5181818181818182, 0.9181818181818182, 0.5363636363636364, 0.2727272727272727, 0.16363636363636364, 0.16363636363636364, 0.15454545454545454, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.10909090909090909, 0.11818181818181818, 0.12727272727272726, 0.11818181818181818, 0.11818181818181818, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.14545454545454545, 0.13636363636363635, 0.13636363636363635, 0.14545454545454545, 0.14545454545454545, 0.09090909090909091, 0.1, 0.10909090909090909, 0.1, 0.1, 0.10909090909090909, 0.10909090909090909, 0.11818181818181818, 0.12727272727272726, 0.5181818181818182, 0.5636363636363636, 0.8090909090909091, 0.8636363636363636, 0.8818181818181818, 0.9181818181818182, 0.9363636363636364, 0.9363636363636364, 0.9454545454545454, 0.9454545454545454, 0.9363636363636364, 0.9272727272727272, 0.9, 0.8818181818181818, 0.8181818181818182, 0.8090909090909091, 0.8, 0.8545454545454545, 0.6090909090909091, 0.6090909090909091, 0.6181818181818182, 0.6272727272727273, 0.6636363636363637, 0.6727272727272727, 0.7181818181818181, 0.8818181818181818], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HATPase_c_4.gap.json b/pfam_gap_rates/HATPase_c_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c76488db9099d1a3571b0408a6da8a094bee71e2
--- /dev/null
+++ b/pfam_gap_rates/HATPase_c_4.gap.json
@@ -0,0 +1 @@
+{"family": "HATPase_c_4", "n_seqs": 1105, "length": 90, "gap_rates": [0.7013574660633484, 0.5067873303167421, 0.2914027149321267, 0.21357466063348415, 0.16380090497737557, 0.09592760180995476, 0.08959276018099548, 0.08506787330316742, 0.07873303167420814, 0.06877828054298643, 0.06063348416289593, 0.046153846153846156, 0.037104072398190045, 0.03076923076923077, 0.027149321266968326, 0.02081447963800905, 0.02081447963800905, 0.02081447963800905, 0.019004524886877826, 0.01809954751131222, 0.017194570135746608, 0.017194570135746608, 0.1592760180995475, 0.1339366515837104, 0.019909502262443438, 0.014479638009049774, 0.014479638009049774, 0.013574660633484163, 0.034389140271493215, 0.8217194570135746, 0.5746606334841629, 0.19276018099547512, 0.026244343891402715, 0.019004524886877826, 0.013574660633484163, 0.007239819004524887, 0.006334841628959276, 0.006334841628959276, 0.006334841628959276, 0.005429864253393665, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.006334841628959276, 0.006334841628959276, 0.007239819004524887, 0.007239819004524887, 0.008144796380090498, 0.00904977375565611, 0.00904977375565611, 0.009954751131221719, 0.012669683257918552, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.013574660633484163, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.01809954751131222, 0.023529411764705882, 0.03800904977375565, 0.05248868778280543, 0.06244343891402715, 0.15656108597285068, 0.10226244343891402, 0.11312217194570136, 0.13574660633484162, 0.11945701357466064, 0.11312217194570136, 0.11131221719457013, 0.11221719457013575, 0.11764705882352941, 0.9149321266968325, 0.13031674208144797, 0.14389140271493212, 0.16380090497737557, 0.20904977375565612, 0.22171945701357465, 0.2515837104072398, 0.27692307692307694, 0.3067873303167421, 0.38733031674208146, 0.5384615384615384], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HDOD.gap.json b/pfam_gap_rates/HDOD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e17341c1c327b5a5a79e3822681095637d2a3a24
--- /dev/null
+++ b/pfam_gap_rates/HDOD.gap.json
@@ -0,0 +1 @@
+{"family": "HDOD", "n_seqs": 1973, "length": 203, "gap_rates": [0.4749113025848961, 0.35681702990369996, 0.30511910795742525, 0.2772427774961987, 0.26203750633552964, 0.2397364419665484, 0.19614799797263052, 0.1500253421186011, 0.12214901165737456, 0.10694374049670552, 0.099341104916371, 0.0937658388241257, 0.08920425747592499, 0.08413583375570198, 0.08565636087176888, 0.08819057273188038, 0.07247845919918905, 0.05828687278256462, 0.0456158134820071, 0.055752660922453116, 0.03446528129751647, 0.03497212366953877, 0.030410542321338063, 0.02939685757729346, 0.02889001520527116, 0.02889001520527116, 0.02889001520527116, 0.02838317283324886, 0.02889001520527116, 0.029903699949315764, 0.027369488089204256, 0.027876330461226558, 0.027876330461226558, 0.027876330461226558, 0.026862645717181957, 0.026862645717181957, 0.026862645717181957, 0.026355803345159655, 0.026862645717181957, 0.026355803345159655, 0.025848960973137353, 0.025342118601115054, 0.025848960973137353, 0.02838317283324886, 0.03243791180942727, 0.03294475418144957, 0.030917384693360365, 0.030410542321338063, 0.02838317283324886, 0.8849467815509376, 0.039533705017739486, 0.03649265078560568, 0.02939685757729346, 0.026862645717181957, 0.02889001520527116, 0.027369488089204256, 0.026355803345159655, 0.025848960973137353, 0.025848960973137353, 0.025848960973137353, 0.025848960973137353, 0.025848960973137353, 0.025342118601115054, 0.02331474911302585, 0.02280790674100355, 0.02280790674100355, 0.02280790674100355, 0.02280790674100355, 0.02280790674100355, 0.02280790674100355, 0.02331474911302585, 0.025848960973137353, 0.027369488089204256, 0.031931069437404966, 0.03598580841358338, 0.03649265078560568, 0.03750633552965028, 0.041054232133806386, 0.04156107450582869, 0.04156107450582869, 0.04358844399391789, 0.04308160162189559, 0.0456158134820071, 0.047136340598074, 0.0456158134820071, 0.048656867714140906, 0.06183476938672073, 0.9462747085656361, 0.7050177394830208, 0.48859604662949824, 0.4004054738976178, 0.31829700963000507, 0.2549417131272174, 0.20628484541307654, 0.1804358844399392, 0.08413583375570198, 0.039533705017739486, 0.03598580841358338, 0.03395843892549417, 0.03345159655347187, 0.03294475418144957, 0.035478966041561075, 0.03446528129751647, 0.03395843892549417, 0.03243791180942727, 0.031931069437404966, 0.03243791180942727, 0.03243791180942727, 0.031931069437404966, 0.031424227065382664, 0.03294475418144957, 0.03243791180942727, 0.03649265078560568, 0.03649265078560568, 0.03852002027369488, 0.039533705017739486, 0.039533705017739486, 0.04156107450582869, 0.0466294982260517, 0.047136340598074, 0.8261530663963508, 0.1875316776482514, 0.8712620375063356, 0.8484541307653319, 0.0491637100861632, 0.04358844399391789, 0.039026862645717184, 0.039026862645717184, 0.03750633552965028, 0.03801317790167258, 0.039533705017739486, 0.044602128737962494, 0.0496705524581855, 0.08210846426761277, 0.1469842878864673, 0.16066903193106943, 0.21388748099341104, 0.20983274201723265, 0.21388748099341104, 0.22605169792194627, 0.2402432843385707, 0.24581855043081602, 0.2544348707551951, 0.2544348707551951, 0.25392802838317285, 0.2584896097313735, 0.25950329447541814, 0.26558540293968574, 0.2681196147997973, 0.26862645717181954, 0.2711606690319311, 0.2706538266599088, 0.30917384693360367, 0.31221490116573747, 0.4328433857070451, 0.41155600608210846, 0.39584389254941715, 0.3877344145970603, 0.3801317790167258, 0.3826659908768373, 0.44348707551951344, 0.8991383679675621, 0.329954384186518, 0.31322858590978203, 0.2959959452610238, 0.29194120628484543, 0.2934617334009123, 0.2883933096806893, 0.2873796249366447, 0.2883933096806893, 0.2868727825646224, 0.2863659401926001, 0.287886467308667, 0.2863659401926001, 0.2873796249366447, 0.2863659401926001, 0.2868727825646224, 0.287886467308667, 0.2883933096806893, 0.28890015205271163, 0.28890015205271163, 0.2894069944247339, 0.2904206791687785, 0.2904206791687785, 0.2904206791687785, 0.2904206791687785, 0.2904206791687785, 0.2904206791687785, 0.2904206791687785, 0.2909275215408008, 0.29194120628484543, 0.29548910288900154, 0.2975164723770907, 0.30157121135326914, 0.309680689305626, 0.32387227572225036, 0.34313228585909783, 0.3705017739483021, 0.40902179422199697, 0.4515965534718702, 0.4997465788139889, 0.5788139888494678, 0.7557019766852509], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HECT_2.gap.json b/pfam_gap_rates/HECT_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa168050ecd94e48ee226293de4766dd8145e157
--- /dev/null
+++ b/pfam_gap_rates/HECT_2.gap.json
@@ -0,0 +1 @@
+{"family": "HECT_2", "n_seqs": 273, "length": 620, "gap_rates": [0.5421245421245421, 0.5347985347985348, 0.5311355311355311, 0.5201465201465202, 0.5128205128205128, 0.5128205128205128, 0.5128205128205128, 0.5054945054945055, 0.5054945054945055, 0.5018315018315018, 0.5018315018315018, 0.5018315018315018, 0.5018315018315018, 0.5018315018315018, 0.5201465201465202, 0.5091575091575091, 0.4981684981684982, 0.4981684981684982, 0.4981684981684982, 0.8058608058608059, 0.7985347985347986, 0.8864468864468864, 0.9047619047619048, 0.9157509157509157, 0.9267399267399268, 0.945054945054945, 0.9230769230769231, 0.9084249084249084, 0.8901098901098901, 0.8827838827838828, 0.7912087912087912, 0.6227106227106227, 0.5531135531135531, 0.5091575091575091, 0.4835164835164835, 0.47619047619047616, 0.46886446886446886, 0.46153846153846156, 0.46886446886446886, 0.4542124542124542, 0.4542124542124542, 0.48717948717948717, 0.4542124542124542, 0.4432234432234432, 0.4432234432234432, 0.4468864468864469, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HHH_3.gap.json b/pfam_gap_rates/HHH_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83606ac6d322a57dab47af274feea1de84b80e4d
--- /dev/null
+++ b/pfam_gap_rates/HHH_3.gap.json
@@ -0,0 +1 @@
+{"family": "HHH_3", "n_seqs": 3643, "length": 65, "gap_rates": [0.6280538018116937, 0.5712325006862476, 0.4177875377436179, 0.2349711776008784, 0.09415317046390338, 0.049135328026351906, 0.03348888278891024, 0.0076859730990941535, 0.006862475981334065, 0.006587976942080703, 0.006587976942080703, 0.004940982706560527, 0.004940982706560527, 0.0043919846280538015, 0.0043919846280538015, 0.0038429865495470767, 0.0032939884710403516, 0.0016469942355201758, 0.0038429865495470767, 0.026351907768322812, 0.0021959923140269007, 0.0016469942355201758, 0.0019214932747735384, 0.0005489980785067252, 0.0005489980785067252, 0.0002744990392533626, 0.0002744990392533626, 0.0002744990392533626, 0.0002744990392533626, 0.0002744990392533626, 0.0002744990392533626, 0.0002744990392533626, 0.0002744990392533626, 0.0002744990392533626, 0.10101564644523744, 0.06807576173483393, 0.06889925885259401, 0.09772165797419709, 0.007136975020587428, 0.007960472138347515, 0.009058468295360967, 0.008783969256107603, 0.010705462530881142, 0.012077957727147955, 0.01262695580565468, 0.012901454844908043, 0.01592094427669503, 0.02003842986549547, 0.026900905846829536, 0.044194345319791384, 0.039253362613230855, 0.04007685973099094, 0.042547351084271205, 0.047762832830085096, 0.05352731265440571, 0.05901729343947296, 0.06478177326379357, 0.07164424924512765, 0.08317320889376888, 0.09113368103211639, 0.10595662915179797, 0.12160307438923963, 0.14411199560801538, 0.1806203678287126, 0.4367279714520999], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HHH_7.gap.json b/pfam_gap_rates/HHH_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b41c6b420f3bce6a3ab22ea24418440e115c2c5c
--- /dev/null
+++ b/pfam_gap_rates/HHH_7.gap.json
@@ -0,0 +1 @@
+{"family": "HHH_7", "n_seqs": 313, "length": 118, "gap_rates": [0.4185303514376997, 0.14376996805111822, 0.08626198083067092, 0.051118210862619806, 0.04153354632587859, 0.03194888178913738, 0.03194888178913738, 0.025559105431309903, 0.019169329073482427, 0.01597444089456869, 0.012779552715654952, 0.012779552715654952, 0.01597444089456869, 0.01597444089456869, 0.01597444089456869, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.009584664536741214, 0.003194888178913738, 0.003194888178913738, 0.003194888178913738, 0.003194888178913738, 0.003194888178913738, 0.003194888178913738, 0.003194888178913738, 0.003194888178913738, 0.003194888178913738, 0.003194888178913738, 0.0, 0.0, 0.0, 0.0, 0.003194888178913738, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.009584664536741214, 0.012779552715654952, 0.051118210862619806, 0.07348242811501597, 0.07348242811501597, 0.14057507987220447, 0.038338658146964855, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.025559105431309903, 0.02875399361022364, 0.051118210862619806, 0.051118210862619806, 0.9329073482428115, 0.9456869009584664, 0.9329073482428115, 0.9297124600638977, 0.07348242811501597, 0.8913738019169329, 0.9265175718849841, 0.9297124600638977, 0.9265175718849841, 0.8913738019169329, 0.8690095846645367, 0.07348242811501597, 0.8977635782747604, 0.9488817891373802, 0.9137380191693291, 0.8945686900958466, 0.04472843450479233, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04472843450479233, 0.051118210862619806, 0.051118210862619806, 0.051118210862619806, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.05750798722044728, 0.05750798722044728, 0.06070287539936102, 0.08306709265175719, 0.46325878594249204], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HH_signal.gap.json b/pfam_gap_rates/HH_signal.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2b5ff08ad363c51082f2f70ed07c7fa29fb0c48
--- /dev/null
+++ b/pfam_gap_rates/HH_signal.gap.json
@@ -0,0 +1 @@
+{"family": "HH_signal", "n_seqs": 128, "length": 165, "gap_rates": [0.4375, 0.4296875, 0.4296875, 0.4296875, 0.4296875, 0.4296875, 0.828125, 0.4453125, 0.4296875, 0.4140625, 0.40625, 0.390625, 0.3828125, 0.3828125, 0.3828125, 0.359375, 0.9375, 0.359375, 0.359375, 0.3515625, 0.34375, 0.3359375, 0.3359375, 0.328125, 0.328125, 0.3203125, 0.3203125, 0.3203125, 0.3203125, 0.3203125, 0.3203125, 0.3203125, 0.3359375, 0.34375, 0.328125, 0.3203125, 0.3125, 0.3046875, 0.3046875, 0.3046875, 0.296875, 0.2890625, 0.296875, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.296875, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.2890625, 0.28125, 0.28125, 0.28125, 0.28125, 0.2734375, 0.28125, 0.2734375, 0.28125, 0.28125, 0.265625, 0.2421875, 0.2265625, 0.203125, 0.203125, 0.1953125, 0.15625, 0.140625, 0.1015625, 0.1171875, 0.1328125, 0.1484375, 0.1484375, 0.1640625, 0.171875, 0.171875, 0.171875, 0.171875, 0.171875, 0.171875, 0.1796875, 0.1796875, 0.1328125, 0.1328125, 0.125, 0.125, 0.1328125, 0.125, 0.9375, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.15625, 0.1640625, 0.1796875, 0.9453125, 0.1640625, 0.15625, 0.140625, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.1328125, 0.1328125, 0.1328125, 0.1328125, 0.140625, 0.140625, 0.1484375, 0.1484375, 0.140625, 0.140625, 0.1484375, 0.15625, 0.15625, 0.1484375, 0.1484375, 0.1484375, 0.15625, 0.15625, 0.15625, 0.15625, 0.15625, 0.15625, 0.15625, 0.15625, 0.15625, 0.15625, 0.15625, 0.1640625, 0.1796875, 0.1875, 0.1953125, 0.1875, 0.1953125, 0.21875, 0.1953125, 0.1953125, 0.1953125, 0.203125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HIPIP.gap.json b/pfam_gap_rates/HIPIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d67d5ce0b515841ba6f6495a363700f834abd2e5
--- /dev/null
+++ b/pfam_gap_rates/HIPIP.gap.json
@@ -0,0 +1 @@
+{"family": "HIPIP", "n_seqs": 109, "length": 71, "gap_rates": [0.44954128440366975, 0.22935779816513763, 0.21100917431192662, 0.1834862385321101, 0.1834862385321101, 0.1743119266055046, 0.1651376146788991, 0.1651376146788991, 0.1651376146788991, 0.1651376146788991, 0.1559633027522936, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.13761467889908258, 0.1559633027522936, 0.1651376146788991, 0.1743119266055046, 0.5137614678899083, 0.4954128440366973, 0.3211009174311927, 0.1559633027522936, 0.09174311926605505, 0.07339449541284404, 0.06422018348623854, 0.03669724770642202, 0.8715596330275229, 0.9357798165137615, 0.8990825688073395, 0.8532110091743119, 0.009174311926605505, 0.009174311926605505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.29357798165137616, 0.8165137614678899, 0.11926605504587157, 0.11926605504587157, 0.10091743119266056, 0.01834862385321101, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009174311926605505, 0.11926605504587157, 0.027522935779816515, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.21100917431192662], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HMG14_17.gap.json b/pfam_gap_rates/HMG14_17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2ee9a6bb25400455f392106ef2bf148b8d3b3bb
--- /dev/null
+++ b/pfam_gap_rates/HMG14_17.gap.json
@@ -0,0 +1 @@
+{"family": "HMG14_17", "n_seqs": 137, "length": 108, "gap_rates": [0.2773722627737226, 0.26277372262773724, 0.24087591240875914, 0.22627737226277372, 0.21897810218978103, 0.17518248175182483, 0.2116788321167883, 0.2116788321167883, 0.5474452554744526, 0.5693430656934306, 0.9343065693430657, 0.5693430656934306, 0.5255474452554745, 0.24817518248175183, 0.17518248175182483, 0.16058394160583941, 0.145985401459854, 0.13138686131386862, 0.12408759124087591, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.1386861313868613, 0.19708029197080293, 0.12408759124087591, 0.10948905109489052, 0.10218978102189781, 0.11678832116788321, 0.10218978102189781, 0.10218978102189781, 0.10218978102189781, 0.072992700729927, 0.072992700729927, 0.15328467153284672, 0.06569343065693431, 0.043795620437956206, 0.058394160583941604, 0.058394160583941604, 0.058394160583941604, 0.043795620437956206, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.014598540145985401, 0.6934306569343066, 0.7007299270072993, 0.927007299270073, 0.9343065693430657, 0.948905109489051, 0.948905109489051, 0.9416058394160584, 0.9343065693430657, 0.708029197080292, 0.7007299270072993, 0.6861313868613139, 0.014598540145985401, 0.5547445255474452, 0.5036496350364964, 0.014598540145985401, 0.014598540145985401, 0.021897810218978103, 0.029197080291970802, 0.021897810218978103, 0.014598540145985401, 0.0072992700729927005, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.029197080291970802, 0.029197080291970802, 0.021897810218978103, 0.021897810218978103, 0.0364963503649635, 0.0364963503649635, 0.043795620437956206, 0.051094890510948905, 0.583941605839416, 0.5401459854014599, 0.8832116788321168, 0.5255474452554745, 0.5182481751824818, 0.051094890510948905, 0.029197080291970802, 0.072992700729927, 0.0364963503649635, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.051094890510948905, 0.051094890510948905, 0.058394160583941604, 0.0948905109489051, 0.06569343065693431, 0.08759124087591241, 0.0948905109489051, 0.10948905109489052, 0.13138686131386862, 0.16058394160583941, 0.17518248175182483, 0.1897810218978102, 0.21897810218978103, 0.2773722627737226, 0.3722627737226277, 0.5766423357664233], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HMG_box_2.gap.json b/pfam_gap_rates/HMG_box_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0abbee533f6e6153b78e44e3e4f618433301f946
--- /dev/null
+++ b/pfam_gap_rates/HMG_box_2.gap.json
@@ -0,0 +1 @@
+{"family": "HMG_box_2", "n_seqs": 667, "length": 82, "gap_rates": [0.719640179910045, 0.545727136431784, 0.4122938530734633, 0.3448275862068966, 0.1874062968515742, 0.15742128935532235, 0.15742128935532235, 0.09145427286356822, 0.07946026986506746, 0.07496251874062969, 0.06746626686656672, 0.06296851574212893, 0.05997001499250375, 0.05997001499250375, 0.05547226386806597, 0.05247376311844078, 0.05247376311844078, 0.05847076461769116, 0.053973013493253376, 0.046476761619190406, 0.05247376311844078, 0.05247376311844078, 0.05247376311844078, 0.05247376311844078, 0.046476761619190406, 0.9055472263868066, 0.9205397301349325, 0.9400299850074962, 0.9460269865067467, 0.9280359820089955, 0.9100449775112444, 0.8935532233883059, 0.6731634182908546, 0.21739130434782608, 0.18290854572713644, 0.6101949025487257, 0.5142428785607196, 0.13793103448275862, 0.12443778110944528, 0.05847076461769116, 0.046476761619190406, 0.038980509745127435, 0.047976011994003, 0.043478260869565216, 0.03298350824587706, 0.031484257871064465, 0.02848575712143928, 0.022488755622188907, 0.022488755622188907, 0.022488755622188907, 0.020989505247376312, 0.022488755622188907, 0.022488755622188907, 0.022488755622188907, 0.013493253373313344, 0.014992503748125937, 0.014992503748125937, 0.013493253373313344, 0.013493253373313344, 0.013493253373313344, 0.014992503748125937, 0.01649175412293853, 0.017991004497751123, 0.019490254872563718, 0.022488755622188907, 0.026986506746626688, 0.029985007496251874, 0.029985007496251874, 0.043478260869565216, 0.05697151424287856, 0.08245877061469266, 0.09295352323838081, 0.10944527736131934, 0.13193403298350825, 0.1619190404797601, 0.21739130434782608, 0.24437781109445278, 0.2983508245877061, 0.3793103448275862, 0.43928035982008995, 0.5022488755622189, 0.9445277361319341], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HSL_N.gap.json b/pfam_gap_rates/HSL_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7072cec1e2002eb29c3fd859edbca3cccbbb7ff6
--- /dev/null
+++ b/pfam_gap_rates/HSL_N.gap.json
@@ -0,0 +1 @@
+{"family": "HSL_N", "n_seqs": 105, "length": 328, "gap_rates": [0.8285714285714286, 0.6190476190476191, 0.5333333333333333, 0.5142857142857142, 0.4857142857142857, 0.4666666666666667, 0.45714285714285713, 0.45714285714285713, 0.45714285714285713, 0.44761904761904764, 0.4380952380952381, 0.4380952380952381, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.4095238095238095, 0.4, 0.8952380952380953, 0.41904761904761906, 0.38095238095238093, 0.37142857142857144, 0.34285714285714286, 0.8761904761904762, 0.9428571428571428, 0.9333333333333333, 0.819047619047619, 0.3333333333333333, 0.3142857142857143, 0.3047619047619048, 0.3047619047619048, 0.3047619047619048, 0.3047619047619048, 0.3047619047619048, 0.29523809523809524, 0.29523809523809524, 0.29523809523809524, 0.29523809523809524, 0.29523809523809524, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.9047619047619048, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HSP9_HSP12.gap.json b/pfam_gap_rates/HSP9_HSP12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bbf3456dad59de63638938a049e988de8541461f
--- /dev/null
+++ b/pfam_gap_rates/HSP9_HSP12.gap.json
@@ -0,0 +1 @@
+{"family": "HSP9_HSP12", "n_seqs": 114, "length": 59, "gap_rates": [0.07894736842105263, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.017543859649122806, 0.017543859649122806, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008771929824561403, 0.008771929824561403, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.06140350877192982, 0.05263157894736842, 0.05263157894736842, 0.06140350877192982, 0.06140350877192982, 0.05263157894736842, 0.043859649122807015, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.2894736842105263], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_29.gap.json b/pfam_gap_rates/HTH_29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70f82a8537241e871e73e749f44a27a7df808de4
--- /dev/null
+++ b/pfam_gap_rates/HTH_29.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_29", "n_seqs": 519, "length": 65, "gap_rates": [0.36801541425818884, 0.279383429672447, 0.2023121387283237, 0.1599229287090559, 0.14450867052023122, 0.1329479768786127, 0.10404624277456648, 0.09441233140655106, 0.0789980732177264, 0.057803468208092484, 0.057803468208092484, 0.055876685934489405, 0.2524084778420039, 0.48747591522157996, 0.025048169556840076, 0.015414258188824663, 0.01348747591522158, 0.009633911368015413, 0.009633911368015413, 0.007707129094412331, 0.005780346820809248, 0.0038535645472061657, 0.0019267822736030828, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019267822736030828, 0.0038535645472061657, 0.02119460500963391, 0.017341040462427744, 0.015414258188824663, 0.015414258188824663, 0.009633911368015413, 0.1348747591522158, 0.14836223506743737, 0.05973025048169557, 0.02119460500963391, 0.028901734104046242, 0.036608863198458574, 0.5722543352601156, 0.1001926782273603, 0.0674373795761079, 0.08285163776493257, 0.14258188824662812, 0.06358381502890173, 0.09441233140655106, 0.10789980732177264, 0.14258188824662812, 0.2138728323699422, 0.8362235067437379, 0.45472061657032753, 0.21579961464354527, 0.22928709055876687, 0.2909441233140655, 0.3198458574181118, 0.3892100192678227, 0.48940269749518306, 0.7398843930635838], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_30.gap.json b/pfam_gap_rates/HTH_30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5056ec3eb476163804860307b71f4bf465c67a5
--- /dev/null
+++ b/pfam_gap_rates/HTH_30.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_30", "n_seqs": 2781, "length": 59, "gap_rates": [0.34735706580366776, 0.1654081265731751, 0.08522114347357065, 0.037037037037037035, 0.02445163610212154, 0.020136641495864797, 0.017979144192736426, 0.015102481121898598, 0.012585400934915498, 0.011147069399496584, 0.011506652283351312, 0.036677454153182305, 0.007551240560949299, 0.0068320747932398415, 0.006112909025530385, 0.004674577490111471, 0.003955411722402014, 0.002876663070837828, 0.003236245954692557, 0.002876663070837828, 0.002157497303128371, 0.001438331535418914, 0.001438331535418914, 0.0003595828838547285, 0.0003595828838547285, 0.0003595828838547285, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0003595828838547285, 0.000719165767709457, 0.002157497303128371, 0.0025170801869830997, 0.004314994606256742, 0.004674577490111471, 0.005034160373966199, 0.011506652283351312, 0.009708737864077669, 0.010787486515641856, 0.008270406328658756, 0.011147069399496584, 0.011866235167206042, 0.03559870550161812, 0.039554117224020136, 0.029845379359942466, 0.038115785688601224, 0.038834951456310676, 0.038475368572455954, 0.041711614527148506, 0.04458827759798634, 0.05573534699748292, 0.06796116504854369, 0.09277238403451996, 0.13196691837468535, 0.2646530025170802, 0.7029845379359942], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_37.gap.json b/pfam_gap_rates/HTH_37.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c6a4cbd0bfe3e0686b2eeb242c8470ae5e594fc
--- /dev/null
+++ b/pfam_gap_rates/HTH_37.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_37", "n_seqs": 439, "length": 89, "gap_rates": [0.724373576309795, 0.5854214123006833, 0.5330296127562643, 0.5011389521640092, 0.5694760820045558, 0.44874715261959, 0.3895216400911162, 0.34851936218678814, 0.30751708428246016, 0.2984054669703872, 0.26651480637813213, 0.24829157175398633, 0.2164009111617312, 0.18906605922551253, 0.9111617312072893, 0.9430523917995444, 0.9453302961275627, 0.9407744874715261, 0.8883826879271071, 0.17312072892938496, 0.16173120728929385, 0.14578587699316628, 0.1275626423690205, 0.11389521640091116, 0.09567198177676538, 0.07061503416856492, 0.0387243735763098, 0.856492027334852, 0.9476082004555809, 0.8724373576309795, 0.8451025056947609, 0.022779043280182234, 0.018223234624145785, 0.015945330296127564, 0.015945330296127564, 0.015945330296127564, 0.015945330296127564, 0.01366742596810934, 0.01366742596810934, 0.009111617312072893, 0.009111617312072893, 0.00683371298405467, 0.00683371298405467, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.00683371298405467, 0.00683371298405467, 0.004555808656036446, 0.002277904328018223, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.1867881548974943, 0.23006833712984054, 0.004555808656036446, 0.009111617312072893, 0.011389521640091117, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.011389521640091117, 0.009111617312072893, 0.011389521640091117, 0.011389521640091117, 0.01366742596810934, 0.01366742596810934, 0.018223234624145785, 0.018223234624145785, 0.02050113895216401, 0.025056947608200455, 0.02733485193621868, 0.03644646924829157, 0.04100227790432802, 0.06150341685649203, 0.0683371298405467, 0.0888382687927107, 0.10022779043280182, 0.14350797266514806, 0.31890660592255127, 0.744874715261959], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_45.gap.json b/pfam_gap_rates/HTH_45.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c7f38178127255d209143ae79335e232a67e202
--- /dev/null
+++ b/pfam_gap_rates/HTH_45.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_45", "n_seqs": 138, "length": 88, "gap_rates": [0.45652173913043476, 0.3188405797101449, 0.30434782608695654, 0.2898550724637681, 0.2753623188405797, 0.2391304347826087, 0.21739130434782608, 0.1956521739130435, 0.15942028985507245, 0.10869565217391304, 0.09420289855072464, 0.07246376811594203, 0.07971014492753623, 0.11594202898550725, 0.09420289855072464, 0.38405797101449274, 0.9347826086956522, 0.7608695652173914, 0.057971014492753624, 0.057971014492753624, 0.050724637681159424, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.036231884057971016, 0.028985507246376812, 0.028985507246376812, 0.021739130434782608, 0.021739130434782608, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.41304347826086957, 0.5362318840579711, 0.9057971014492754, 0.9202898550724637, 0.9130434782608695, 0.8043478260869565, 0.463768115942029, 0.38405797101449274, 0.007246376811594203, 0.007246376811594203, 0.9492753623188406, 0.8840579710144928, 0.036231884057971016, 0.036231884057971016, 0.028985507246376812, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.028985507246376812, 0.028985507246376812, 0.06521739130434782, 0.07246376811594203, 0.09420289855072464, 0.13768115942028986, 0.16666666666666666, 0.21739130434782608, 0.2898550724637681, 0.42028985507246375, 0.5217391304347826, 0.8043478260869565], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_9.gap.json b/pfam_gap_rates/HTH_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b5d1fedf2acf1c645904a3d3d65dce544a4224e
--- /dev/null
+++ b/pfam_gap_rates/HTH_9.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_9", "n_seqs": 254, "length": 64, "gap_rates": [0.610236220472441, 0.2204724409448819, 0.16141732283464566, 0.11811023622047244, 0.08267716535433071, 0.07086614173228346, 0.06692913385826772, 0.05905511811023622, 0.05905511811023622, 0.08267716535433071, 0.051181102362204724, 0.051181102362204724, 0.051181102362204724, 0.051181102362204724, 0.047244094488188976, 0.027559055118110236, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.031496062992125984, 0.01968503937007874, 0.01968503937007874, 0.015748031496062992, 0.031496062992125984, 0.01968503937007874, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.023622047244094488, 0.027559055118110236, 0.9291338582677166, 0.8818897637795275, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.01968503937007874, 0.01968503937007874, 0.023622047244094488, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.031496062992125984, 0.031496062992125984, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03937007874015748, 0.1062992125984252, 0.24015748031496062, 0.3779527559055118, 0.5118110236220472, 0.6850393700787402, 0.9409448818897638], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_OrfB_IS605.gap.json b/pfam_gap_rates/HTH_OrfB_IS605.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8e969e2dcade813b3c79fe1f189967285ebe57a
--- /dev/null
+++ b/pfam_gap_rates/HTH_OrfB_IS605.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_OrfB_IS605", "n_seqs": 1551, "length": 49, "gap_rates": [0.21083172147001933, 0.9426176660219213, 0.7633784655061251, 0.6266924564796905, 0.1283043197936815, 0.08897485493230174, 0.06447453255963895, 0.05222437137330754, 0.03868471953578337, 0.03546099290780142, 0.03481624758220503, 0.03352675693101225, 0.027079303675048357, 0.025145067698259187, 0.024500322372662798, 0.02385557704706641, 0.02256608639587363, 0.02192134107027724, 0.02127659574468085, 0.020631850419084462, 0.019987105093488073, 0.01160541586073501, 0.009026434558349452, 0.007736943907156673, 0.004513217279174726, 0.003223726627981947, 0.003223726627981947, 0.0038684719535783366, 0.004513217279174726, 0.003223726627981947, 0.004513217279174726, 0.0051579626047711154, 0.006447453255963894, 0.0070921985815602835, 0.01160541586073501, 0.02321083172147002, 0.027079303675048357, 0.03546099290780142, 0.0425531914893617, 0.07607994842037395, 0.07865892972275951, 0.09864603481624758, 0.13926499032882012, 0.15538362346872986, 0.16956802063185042, 0.21727917472598324, 0.30689877498388135, 0.4339136041263701, 0.7356544165054804], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hat1_N.gap.json b/pfam_gap_rates/Hat1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68f86f82deafa2e1033956b20bda4480546bcda8
--- /dev/null
+++ b/pfam_gap_rates/Hat1_N.gap.json
@@ -0,0 +1 @@
+{"family": "Hat1_N", "n_seqs": 305, "length": 206, "gap_rates": [0.6065573770491803, 0.3770491803278688, 0.23278688524590163, 0.18360655737704917, 0.16393442622950818, 0.16393442622950818, 0.16065573770491803, 0.16065573770491803, 0.1540983606557377, 0.1540983606557377, 0.15081967213114755, 0.14754098360655737, 0.14426229508196722, 0.1377049180327869, 0.12786885245901639, 0.12459016393442623, 0.12459016393442623, 0.12131147540983607, 0.11147540983606558, 0.13442622950819672, 0.16721311475409836, 0.9016393442622951, 0.9147540983606557, 0.8426229508196721, 0.8065573770491803, 0.7934426229508197, 0.7081967213114754, 0.5344262295081967, 0.30491803278688523, 0.2098360655737705, 0.18032786885245902, 0.16065573770491803, 0.10819672131147541, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06557377049180328, 0.05245901639344262, 0.05245901639344262, 0.05573770491803279, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.08524590163934426, 0.04918032786885246, 0.05573770491803279, 0.04262295081967213, 0.05901639344262295, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.04262295081967213, 0.03934426229508197, 0.04262295081967213, 0.04262295081967213, 0.04918032786885246, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.05901639344262295, 0.04590163934426229, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.04262295081967213, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.04262295081967213, 0.04262295081967213, 0.03934426229508197, 0.04590163934426229, 0.03934426229508197, 0.1901639344262295, 0.18360655737704917, 0.04918032786885246, 0.04590163934426229, 0.25573770491803277, 0.2786885245901639, 0.25245901639344265, 0.45901639344262296, 0.14098360655737704, 0.6983606557377049, 0.6721311475409836, 0.029508196721311476, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.940983606557377, 0.9344262295081968, 0.036065573770491806, 0.029508196721311476, 0.029508196721311476, 0.03278688524590164, 0.06557377049180328, 0.05245901639344262, 0.8557377049180328, 0.9278688524590164, 0.921311475409836, 0.7639344262295082, 0.04590163934426229, 0.09508196721311475, 0.06229508196721312, 0.05901639344262295, 0.05245901639344262, 0.05245901639344262, 0.05573770491803279, 0.04918032786885246, 0.04590163934426229, 0.03934426229508197, 0.036065573770491806, 0.31475409836065577, 0.9377049180327869, 0.8098360655737705, 0.07213114754098361, 0.05573770491803279, 0.06885245901639345, 0.06557377049180328, 0.05245901639344262, 0.05573770491803279, 0.04918032786885246, 0.05573770491803279, 0.05245901639344262, 0.8950819672131147, 0.8885245901639345, 0.03934426229508197, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04918032786885246, 0.04590163934426229, 0.04262295081967213, 0.04918032786885246, 0.05245901639344262, 0.04918032786885246, 0.05901639344262295, 0.9016393442622951, 0.9278688524590164, 0.9180327868852459, 0.8885245901639345, 0.10163934426229508, 0.9475409836065574, 0.9475409836065574, 0.06557377049180328, 0.5836065573770491, 0.6327868852459017, 0.6950819672131148, 0.7934426229508197, 0.819672131147541, 0.8262295081967214, 0.8590163934426229, 0.8885245901639345, 0.9016393442622951, 0.9114754098360656, 0.940983606557377, 0.9475409836065574, 0.9180327868852459, 0.9081967213114754, 0.898360655737705, 0.8754098360655738, 0.8327868852459016, 0.8262295081967214, 0.8098360655737705, 0.7836065573770492, 0.6524590163934426, 0.6163934426229508, 0.580327868852459, 0.04590163934426229, 0.04590163934426229, 0.04918032786885246, 0.04918032786885246, 0.05245901639344262, 0.05573770491803279, 0.05901639344262295, 0.05573770491803279, 0.940983606557377, 0.07540983606557378, 0.07868852459016394, 0.06229508196721312, 0.06885245901639345, 0.06885245901639345, 0.06557377049180328, 0.09836065573770492, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.07213114754098361, 0.07213114754098361, 0.07868852459016394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Heme_oxygenase.gap.json b/pfam_gap_rates/Heme_oxygenase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2e5d69c416675518219c47dc5b675c15870396b
--- /dev/null
+++ b/pfam_gap_rates/Heme_oxygenase.gap.json
@@ -0,0 +1 @@
+{"family": "Heme_oxygenase", "n_seqs": 625, "length": 237, "gap_rates": [0.5648, 0.4016, 0.3424, 0.3056, 0.28, 0.2592, 0.2544, 0.2528, 0.248, 0.2464, 0.2464, 0.2432, 0.24, 0.24, 0.24, 0.24, 0.2384, 0.2336, 0.2336, 0.2352, 0.2368, 0.24, 0.2368, 0.2336, 0.2352, 0.2576, 0.2512, 0.3312, 0.2896, 0.2784, 0.2176, 0.1776, 0.1744, 0.16, 0.1552, 0.1392, 0.1392, 0.1376, 0.1344, 0.1344, 0.1344, 0.1648, 0.1344, 0.1312, 0.1312, 0.1264, 0.1248, 0.1232, 0.1232, 0.1232, 0.1232, 0.224, 0.16, 0.1616, 0.1632, 0.1616, 0.1552, 0.3216, 0.2288, 0.1904, 0.1712, 0.1616, 0.1376, 0.128, 0.1296, 0.112, 0.1024, 0.104, 0.1008, 0.7712, 0.0704, 0.0688, 0.0624, 0.0608, 0.0608, 0.0576, 0.056, 0.0576, 0.0544, 0.056, 0.0576, 0.0576, 0.0816, 0.0736, 0.0752, 0.0944, 0.096, 0.9488, 0.8624, 0.2976, 0.2, 0.1824, 0.192, 0.1568, 0.144, 0.1216, 0.1024, 0.0928, 0.0768, 0.0768, 0.08, 0.0768, 0.072, 0.0704, 0.0704, 0.0672, 0.0704, 0.0704, 0.0704, 0.072, 0.0784, 0.0848, 0.096, 0.1008, 0.1008, 0.9488, 0.848, 0.0688, 0.0592, 0.0544, 0.0512, 0.04, 0.0384, 0.0368, 0.0352, 0.0368, 0.0368, 0.0384, 0.0384, 0.0384, 0.0432, 0.0432, 0.0432, 0.0432, 0.0704, 0.0576, 0.0464, 0.0464, 0.048, 0.048, 0.0464, 0.048, 0.8816, 0.8896, 0.8928, 0.9072, 0.9184, 0.9328, 0.9392, 0.9456, 0.9488, 0.9424, 0.9344, 0.9232, 0.9168, 0.8992, 0.8912, 0.8816, 0.8768, 0.1952, 0.1456, 0.0848, 0.0736, 0.0656, 0.0816, 0.0848, 0.0736, 0.072, 0.08, 0.1088, 0.6464, 0.3616, 0.1424, 0.0848, 0.072, 0.0688, 0.0688, 0.0736, 0.072, 0.072, 0.0752, 0.4176, 0.312, 0.8608, 0.9264, 0.9488, 0.9488, 0.9424, 0.8784, 0.8416, 0.088, 0.08, 0.0768, 0.0768, 0.0768, 0.0768, 0.0768, 0.0768, 0.0768, 0.0768, 0.0768, 0.12, 0.0976, 0.0928, 0.0928, 0.0896, 0.8928, 0.8848, 0.0976, 0.8992, 0.8928, 0.0864, 0.088, 0.0912, 0.0928, 0.0912, 0.088, 0.0832, 0.0832, 0.0832, 0.0832, 0.0832, 0.0832, 0.0832, 0.0848, 0.0864, 0.088, 0.088, 0.0896, 0.1168, 0.1504, 0.16, 0.184, 0.2, 0.2384, 0.3968, 0.7184], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hemopexin.gap.json b/pfam_gap_rates/Hemopexin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44b6796e99b30f37a5811ee24931b7543308f28a
--- /dev/null
+++ b/pfam_gap_rates/Hemopexin.gap.json
@@ -0,0 +1 @@
+{"family": "Hemopexin", "n_seqs": 1901, "length": 51, "gap_rates": [0.24513413992635455, 0.15202524986849028, 0.11046817464492373, 0.0825881115202525, 0.07048921620199895, 0.06733298264071541, 0.05681220410310363, 0.05207785376117833, 0.2667017359284587, 0.9437138348237769, 0.5486586007364544, 0.022619673855865333, 0.01788532351394003, 0.009994739610731194, 0.008416622830089426, 0.008416622830089426, 0.007890583903208837, 0.00631246712256707, 0.0015781167806417674, 0.0021041557075223566, 0.0010520778537611783, 0.0010520778537611783, 0.0010520778537611783, 0.0005260389268805891, 0.0021041557075223566, 0.003156233561283535, 0.004734350341925302, 0.00631246712256707, 0.5481325618095739, 0.9452919516044187, 0.9047869542346134, 0.47711730668069435, 0.11730668069437139, 0.041031036296685953, 0.03261441346659653, 0.036296685954760655, 0.03945291951604419, 0.09626512361914781, 0.04576538663861126, 0.04418726985796949, 0.048921620199894794, 0.05470804839558127, 0.06628090478695424, 0.07890583903208838, 0.09626512361914781, 0.5344555497106785, 0.4597580220936349, 0.1699105733824303, 0.20725933719095213, 0.3019463440294582, 0.7133087848500789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hepar_II_III_N.gap.json b/pfam_gap_rates/Hepar_II_III_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0a9f0af68fb5050574bb4d5886b4d2b5da44af2
--- /dev/null
+++ b/pfam_gap_rates/Hepar_II_III_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HgmA.gap.json b/pfam_gap_rates/HgmA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a07079e4025b8147444a379d0da876e2f4561e79
--- /dev/null
+++ b/pfam_gap_rates/HgmA.gap.json
@@ -0,0 +1 @@
+{"family": "HgmA", "n_seqs": 815, "length": 450, "gap_rates": [0.5987730061349693, 0.44785276073619634, 0.4294478527607362, 0.4245398773006135, 0.42208588957055215, 0.42208588957055215, 0.4196319018404908, 0.4196319018404908, 0.4196319018404908, 0.4208588957055215, 0.4147239263803681, 0.4147239263803681, 0.9337423312883436, 0.9337423312883436, 0.4147239263803681, 0.4147239263803681, 0.41226993865030676, 0.41226993865030676, 0.4098159509202454, 0.40613496932515336, 0.4049079754601227, 0.40245398773006136, 0.403680981595092, 0.4049079754601227, 0.40245398773006136, 0.4012269938650307, 0.4012269938650307, 0.3987730061349693, 0.39386503067484663, 0.3889570552147239, 0.38650306748466257, 0.3852760736196319, 0.3803680981595092, 0.37668711656441717, 0.37300613496932516, 0.37300613496932516, 0.37300613496932516, 0.37300613496932516, 0.3754601226993865, 0.37423312883435583, 0.37668711656441717, 0.37668711656441717, 0.37668711656441717, 0.37668711656441717, 0.37300613496932516, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Hint_2.gap.json b/pfam_gap_rates/Hint_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..863364fbddd3ac83e4580ee36707d019d44e303f
--- /dev/null
+++ b/pfam_gap_rates/Hint_2.gap.json
@@ -0,0 +1 @@
+{"family": "Hint_2", "n_seqs": 642, "length": 156, "gap_rates": [0.4127725856697819, 0.1822429906542056, 0.11370716510903427, 0.07476635514018691, 0.06230529595015576, 0.05451713395638629, 0.04361370716510903, 0.04205607476635514, 0.040498442367601244, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.03582554517133956, 0.03426791277258567, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03115264797507788, 0.029595015576323987, 0.029595015576323987, 0.029595015576323987, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.0264797507788162, 0.0264797507788162, 0.0264797507788162, 0.028037383177570093, 0.04984423676012461, 0.9454828660436138, 0.9454828660436138, 0.9454828660436138, 0.029595015576323987, 0.029595015576323987, 0.9345794392523364, 0.9361370716510904, 0.9330218068535826, 0.028037383177570093, 0.0264797507788162, 0.0264797507788162, 0.028037383177570093, 0.029595015576323987, 0.03115264797507788, 0.03271028037383177, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.04361370716510903, 0.045171339563862926, 0.46417445482866043, 0.867601246105919, 0.4143302180685358, 0.3847352024922118, 0.3691588785046729, 0.35514018691588783, 0.09345794392523364, 0.08411214953271028, 0.06697819314641744, 0.05451713395638629, 0.03426791277258567, 0.03271028037383177, 0.029595015576323987, 0.03115264797507788, 0.03115264797507788, 0.028037383177570093, 0.028037383177570093, 0.029595015576323987, 0.029595015576323987, 0.03426791277258567, 0.037383177570093455, 0.03271028037383177, 0.03115264797507788, 0.03271028037383177, 0.3629283489096573, 0.35514018691588783, 0.34735202492211836, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.029595015576323987, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.029595015576323987, 0.029595015576323987, 0.029595015576323987, 0.029595015576323987, 0.029595015576323987, 0.029595015576323987, 0.029595015576323987, 0.029595015576323987, 0.3333333333333333, 0.3317757009345794, 0.3582554517133956, 0.3644859813084112, 0.3629283489096573, 0.35514018691588783, 0.32866043613707163, 0.3130841121495327, 0.3115264797507788, 0.3115264797507788, 0.3037383177570093, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.03894080996884735, 0.03426791277258567, 0.03271028037383177, 0.03426791277258567, 0.03582554517133956, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.040498442367601244, 0.03894080996884735, 0.04205607476635514, 0.8925233644859814, 0.040498442367601244, 0.602803738317757, 0.03894080996884735, 0.03582554517133956, 0.03894080996884735, 0.9314641744548287, 0.040498442367601244, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.040498442367601244, 0.04205607476635514, 0.04361370716510903, 0.04672897196261682, 0.048286604361370715, 0.04672897196261682, 0.048286604361370715, 0.0529595015576324, 0.059190031152647975, 0.07165109034267912, 0.0794392523364486, 0.09190031152647975, 0.11682242990654206, 0.13551401869158877, 0.14018691588785046, 0.14330218068535824, 0.1542056074766355, 0.1853582554517134, 0.3333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HipA_N.gap.json b/pfam_gap_rates/HipA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..830ba0883b59a87060acccdd8e7592bd17d07635
--- /dev/null
+++ b/pfam_gap_rates/HipA_N.gap.json
@@ -0,0 +1 @@
+{"family": "HipA_N", "n_seqs": 930, "length": 107, "gap_rates": [0.221505376344086, 0.060215053763440864, 0.03333333333333333, 0.02903225806451613, 0.02903225806451613, 0.02903225806451613, 0.02903225806451613, 0.02795698924731183, 0.02795698924731183, 0.02795698924731183, 0.02795698924731183, 0.02795698924731183, 0.06451612903225806, 0.08602150537634409, 0.11182795698924732, 0.3860215053763441, 0.31827956989247314, 0.6387096774193548, 0.7709677419354839, 0.8720430107526882, 0.8193548387096774, 0.7172043010752688, 0.37311827956989246, 0.33548387096774196, 0.4150537634408602, 0.33763440860215055, 0.3161290322580645, 0.2978494623655914, 0.8225806451612904, 0.2645161290322581, 0.16774193548387098, 0.06559139784946237, 0.00967741935483871, 0.007526881720430108, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.007526881720430108, 0.6451612903225806, 0.7462365591397849, 0.7827956989247312, 0.9182795698924732, 0.9311827956989247, 0.8193548387096774, 0.7709677419354839, 0.6849462365591398, 0.36989247311827955, 0.011827956989247311, 0.03333333333333333, 0.007526881720430108, 0.007526881720430108, 0.0064516129032258064, 0.005376344086021506, 0.004301075268817204, 0.002150537634408602, 0.002150537634408602, 0.001075268817204301, 0.001075268817204301, 0.001075268817204301, 0.002150537634408602, 0.0032258064516129032, 0.004301075268817204, 0.002150537634408602, 0.002150537634408602, 0.004301075268817204, 0.004301075268817204, 0.005376344086021506, 0.007526881720430108, 0.0064516129032258064, 0.008602150537634409, 0.008602150537634409, 0.008602150537634409, 0.008602150537634409, 0.008602150537634409, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.02258064516129032, 0.021505376344086023, 0.03333333333333333, 0.27956989247311825, 0.2086021505376344, 0.24193548387096775, 0.2849462365591398, 0.878494623655914, 0.6548387096774193, 0.9290322580645162, 0.9333333333333333, 0.9365591397849462, 0.9419354838709677, 0.9494623655913978, 0.9408602150537635, 0.9365591397849462, 0.9333333333333333, 0.9290322580645162, 0.01827956989247312, 0.01827956989247312, 0.01827956989247312, 0.01935483870967742, 0.02043010752688172, 0.02043010752688172, 0.02043010752688172, 0.026881720430107527, 0.13978494623655913], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HisKA_3.gap.json b/pfam_gap_rates/HisKA_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f808e07c87b741ba6aa82ac9f8c52ca354ea8dd8
--- /dev/null
+++ b/pfam_gap_rates/HisKA_3.gap.json
@@ -0,0 +1 @@
+{"family": "HisKA_3", "n_seqs": 5000, "length": 71, "gap_rates": [0.1404, 0.0536, 0.0232, 0.0108, 0.0056, 0.004, 0.0038, 0.0028, 0.0022, 0.002, 0.002, 0.0018, 0.0014, 0.0012, 0.0012, 0.0012, 0.0012, 0.0014, 0.0014, 0.001, 0.001, 0.0022, 0.0026, 0.003, 0.003, 0.0042, 0.0048, 0.0056, 0.0774, 0.1084, 0.0874, 0.903, 0.1096, 0.1032, 0.082, 0.1488, 0.1112, 0.931, 0.8962, 0.0324, 0.0274, 0.023, 0.0182, 0.0154, 0.016, 0.016, 0.0154, 0.0146, 0.0154, 0.0164, 0.0164, 0.0164, 0.0172, 0.0186, 0.0204, 0.0212, 0.0216, 0.0228, 0.0234, 0.0254, 0.0272, 0.0284, 0.0314, 0.0354, 0.0444, 0.0524, 0.0728, 0.1498, 0.2814, 0.5902, 0.774], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HisKA_7TM.gap.json b/pfam_gap_rates/HisKA_7TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..250a9a23638f873626fd199810da8a7f5fca6451
--- /dev/null
+++ b/pfam_gap_rates/HisKA_7TM.gap.json
@@ -0,0 +1 @@
+{"family": "HisKA_7TM", "n_seqs": 618, "length": 264, "gap_rates": [0.9401294498381877, 0.7103559870550162, 0.5226537216828478, 0.37216828478964403, 0.2961165048543689, 0.1941747572815534, 0.15372168284789645, 0.12459546925566344, 0.11003236245954692, 0.09061488673139159, 0.08090614886731391, 0.07119741100323625, 0.06310679611650485, 0.06472491909385113, 0.06796116504854369, 0.06796116504854369, 0.8090614886731392, 0.0970873786407767, 0.8058252427184466, 0.912621359223301, 0.8592233009708737, 0.5614886731391586, 0.05339805825242718, 0.08414239482200647, 0.11974110032362459, 0.127831715210356, 0.93042071197411, 0.127831715210356, 0.10355987055016182, 0.08414239482200647, 0.948220064724919, 0.8624595469255664, 0.0372168284789644, 0.0372168284789644, 0.03559870550161812, 0.03559870550161812, 0.03559870550161812, 0.032362459546925564, 0.02912621359223301, 0.02750809061488673, 0.02750809061488673, 0.02750809061488673, 0.02750809061488673, 0.025889967637540454, 0.025889967637540454, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HlyD_3.gap.json b/pfam_gap_rates/HlyD_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8cbe635b00ae5d143d80a25ed0fbe1260a00bac5
--- /dev/null
+++ b/pfam_gap_rates/HlyD_3.gap.json
@@ -0,0 +1 @@
+{"family": "HlyD_3", "n_seqs": 3995, "length": 145, "gap_rates": [0.730413016270338, 0.10237797246558197, 0.06783479349186483, 0.05156445556946183, 0.04330413016270338, 0.04230287859824781, 0.03879849812265332, 0.037296620775969964, 0.03579474342928661, 0.033541927409261575, 0.033541927409261575, 0.03329161451814768, 0.030287859824780976, 0.026783479349186484, 0.0230287859824781, 0.7123904881101377, 0.020275344180225283, 0.018523153942428035, 0.01702127659574468, 0.016520650813516898, 0.042803504380475595, 0.029036295369211516, 0.02127659574468085, 0.01877346683354193, 0.0327909887359199, 0.018022528160200252, 0.013516896120150187, 0.011264080100125156, 0.00951188986232791, 0.007259073842302879, 0.006257822277847309, 0.005757196495619525, 0.0425531914893617, 0.9436795994993742, 0.012015018773466833, 0.7602002503128911, 0.002002503128911139, 0.0025031289111389237, 0.006758448060075094, 0.0010012515644555694, 0.0010012515644555694, 0.0010012515644555694, 0.001501877346683354, 0.001501877346683354, 0.000750938673341677, 0.001501877346683354, 0.0022528160200250315, 0.002753441802252816, 0.003254067584480601, 0.003254067584480601, 0.004505632040050063, 0.007008760951188986, 0.018523153942428035, 0.20150187734668334, 0.9329161451814768, 0.939424280350438, 0.92090112640801, 0.7216520650813517, 0.014518147684605758, 0.012515644555694618, 0.012015018773466833, 0.013016270337922404, 0.012515644555694618, 0.013016270337922404, 0.013516896120150187, 0.017521902377972465, 0.01877346683354193, 0.04330413016270338, 0.6978723404255319, 0.5967459324155194, 0.2392991239048811, 0.07684605757196496, 0.12415519399249061, 0.15694618272841052, 0.09436795994993742, 0.660575719649562, 0.03679599499374218, 0.03379224030037547, 0.032290362953692114, 0.03204005006257822, 0.03254067584480601, 0.0327909887359199, 0.03379224030037547, 0.03554443053817272, 0.03704630788485607, 0.039799749687108886, 0.04230287859824781, 0.8553191489361702, 0.9153942428035043, 0.9384230287859825, 0.932415519399249, 0.9058823529411765, 0.8430538172715895, 0.052065081351689614, 0.08760951188986232, 0.8460575719649562, 0.7994993742177722, 0.10337922403003755, 0.902127659574468, 0.9058823529411765, 0.9133917396745932, 0.9296620775969963, 0.9454317897371715, 0.91639549436796, 0.9103879849812265, 0.904630788485607, 0.9001251564455569, 0.10713391739674594, 0.9289111389236546, 0.8931163954943679, 0.21426783479349187, 0.20225281602002504, 0.1509386733416771, 0.7659574468085106, 0.8816020025031289, 0.9216520650813517, 0.9491864831038799, 0.9026282853566959, 0.8302878598247809, 0.7361702127659574, 0.17521902377972465, 0.18523153942428036, 0.19524405506883605, 0.20100125156445556, 0.20801001251564455, 0.21476846057571966, 0.2222778473091364, 0.23404255319148937, 0.2503128911138924, 0.28260325406758446, 0.3246558197747184, 0.6337922403003755, 0.8413016270337922, 0.8858573216520651, 0.8658322903629537, 0.8190237797246558, 0.7594493116395494, 0.7832290362953692, 0.6921151439299124, 0.6923654568210262, 0.7073842302878598, 0.7269086357947434, 0.7484355444305382, 0.7709637046307884, 0.8117647058823529], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hpr_kinase_C.gap.json b/pfam_gap_rates/Hpr_kinase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92a8c32992cc8ea870ca162728e5922a202f346f
--- /dev/null
+++ b/pfam_gap_rates/Hpr_kinase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Hpr_kinase_C", "n_seqs": 958, "length": 172, "gap_rates": [0.3778705636743215, 0.22338204592901878, 0.20146137787056367, 0.18684759916492694, 0.15762004175365343, 0.12108559498956159, 0.07411273486430063, 0.038622129436325675, 0.03444676409185804, 0.027139874739039668, 0.024008350730688934, 0.022964509394572025, 0.022964509394572025, 0.022964509394572025, 0.022964509394572025, 0.020876826722338204, 0.019832985386221295, 0.014613778705636743, 0.011482254697286013, 0.008350730688935281, 0.0041753653444676405, 0.0041753653444676405, 0.003131524008350731, 0.003131524008350731, 0.003131524008350731, 0.003131524008350731, 0.003131524008350731, 0.006263048016701462, 0.0041753653444676405, 0.003131524008350731, 0.003131524008350731, 0.005219206680584551, 0.003131524008350731, 0.003131524008350731, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.9488517745302714, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.0020876826722338203, 0.003131524008350731, 0.006263048016701462, 0.008350730688935281, 0.009394572025052192, 0.012526096033402923, 0.016701461377870562, 0.020876826722338204, 0.29436325678496866, 0.029227557411273485, 0.026096033402922755, 0.021920668058455117, 0.022964509394572025, 0.019832985386221295, 0.019832985386221295, 0.019832985386221295, 0.024008350730688934, 0.022964509394572025, 0.019832985386221295, 0.019832985386221295, 0.019832985386221295, 0.019832985386221295, 0.019832985386221295, 0.019832985386221295, 0.019832985386221295, 0.020876826722338204, 0.022964509394572025, 0.021920668058455117, 0.022964509394572025, 0.032359081419624215, 0.04697286012526096, 0.07933194154488518, 0.10542797494780794, 0.13778705636743216, 0.1638830897703549, 0.17849686847599164, 0.18058455114822547, 0.1826722338204593, 0.18058455114822547, 0.17640918580375783, 0.16805845511482254, 0.162839248434238, 0.15657620041753653, 0.15657620041753653, 0.1544885177453027, 0.1524008350730689, 0.1524008350730689, 0.1534446764091858, 0.1534446764091858, 0.1534446764091858, 0.1534446764091858, 0.1534446764091858, 0.1534446764091858, 0.1534446764091858, 0.15553235908141963, 0.15762004175365343, 0.18789144050104384, 0.19102296450939457, 0.18997912317327767, 0.9144050104384134, 0.8475991649269311, 0.18058455114822547, 0.174321503131524, 0.17014613778705637, 0.16701461377870563, 0.1649269311064718, 0.16597077244258873, 0.16805845511482254, 0.17014613778705637, 0.1732776617954071, 0.1722338204592902, 0.16805845511482254, 0.16805845511482254, 0.16701461377870563, 0.16597077244258873, 0.16701461377870563, 0.16701461377870563, 0.16701461377870563, 0.16805845511482254, 0.16805845511482254, 0.16805845511482254, 0.17014613778705637, 0.1732776617954071, 0.174321503131524, 0.17536534446764093, 0.17536534446764093, 0.17640918580375783, 0.18162839248434237, 0.1826722338204593, 0.1837160751565762, 0.18580375782881003, 0.18684759916492694, 0.18789144050104384, 0.18789144050104384, 0.18893528183716074, 0.18997912317327767, 0.19102296450939457, 0.19206680584551147, 0.1931106471816284, 0.1941544885177453, 0.1941544885177453, 0.1941544885177453, 0.1951983298538622, 0.19624217118997914, 0.19624217118997914, 0.19624217118997914, 0.19937369519832984, 0.20041753653444677, 0.20250521920668058, 0.2056367432150313, 0.2056367432150313, 0.20876826722338204, 0.20876826722338204, 0.21085594989561587, 0.21294363256784968, 0.2160751565762004, 0.21711899791231734, 0.22129436325678498, 0.2244258872651357, 0.24217118997912318, 0.28914405010438415], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hydantoinase_A.gap.json b/pfam_gap_rates/Hydantoinase_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad5043028be5b2c07a279ce60a8e0d7780063502
--- /dev/null
+++ b/pfam_gap_rates/Hydantoinase_A.gap.json
@@ -0,0 +1 @@
+{"family": "Hydantoinase_A", "n_seqs": 1941, "length": 324, "gap_rates": [0.10613086038124678, 0.10252447192168986, 0.09325090159711488, 0.07367336424523442, 0.056156620298815046, 0.05306543019062339, 0.05203503348789284, 0.05100463678516229, 0.05100463678516229, 0.05100463678516229, 0.05100463678516229, 0.05100463678516229, 0.04894384337970119, 0.04894384337970119, 0.04894384337970119, 0.04894384337970119, 0.04894384337970119, 0.04894384337970119, 0.04894384337970119, 0.04894384337970119, 0.04842864502833591, 0.04842864502833591, 0.04894384337970119, 0.04894384337970119, 0.04945904173106646, 0.04997424008243174, 0.04945904173106646, 0.04997424008243174, 0.14528593508500773, 0.16434827408552294, 0.17465224111282843, 0.17516743946419372, 0.8495620814013395, 0.9180834621329211, 0.9376609994848016, 0.9484801648634724, 0.9433281813498197, 0.9247810407006698, 0.8820195775373518, 0.7913446676970634, 0.05306543019062339, 0.04791344667697063, 0.04533745492014426, 0.04533745492014426, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Hydrophob_seed.gap.json b/pfam_gap_rates/Hydrophob_seed.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c640c5e460081d816e72380f7045b2517996c62e
--- /dev/null
+++ b/pfam_gap_rates/Hydrophob_seed.gap.json
@@ -0,0 +1 @@
+{"family": "Hydrophob_seed", "n_seqs": 519, "length": 87, "gap_rates": [0.4527938342967245, 0.1252408477842004, 0.11368015414258188, 0.10789980732177264, 0.08477842003853564, 0.08670520231213873, 0.08092485549132948, 0.06165703275529865, 0.057803468208092484, 0.05394990366088632, 0.05202312138728324, 0.05009633911368015, 0.04816955684007707, 0.04816955684007707, 0.04816955684007707, 0.04816955684007707, 0.5202312138728323, 0.08670520231213873, 0.07129094412331406, 0.06551059730250482, 0.055876685934489405, 0.05394990366088632, 0.05202312138728324, 0.05009633911368015, 0.055876685934489405, 0.10789980732177264, 0.06358381502890173, 0.9171483622350675, 0.05202312138728324, 0.02697495183044316, 0.015414258188824663, 0.01348747591522158, 0.011560693641618497, 0.011560693641618497, 0.009633911368015413, 0.007707129094412331, 0.005780346820809248, 0.005780346820809248, 0.0038535645472061657, 0.007707129094412331, 0.009633911368015413, 0.009633911368015413, 0.011560693641618497, 0.007707129094412331, 0.005780346820809248, 0.007707129094412331, 0.009633911368015413, 0.009633911368015413, 0.009633911368015413, 0.009633911368015413, 0.009633911368015413, 0.015414258188824663, 0.01348747591522158, 0.01348747591522158, 0.01348747591522158, 0.02119460500963391, 0.02119460500963391, 0.017341040462427744, 0.023121387283236993, 0.859344894026975, 0.023121387283236993, 0.030828516377649325, 0.04238921001926782, 0.038535645472061654, 0.038535645472061654, 0.04238921001926782, 0.04238921001926782, 0.036608863198458574, 0.036608863198458574, 0.036608863198458574, 0.04046242774566474, 0.04046242774566474, 0.04238921001926782, 0.04046242774566474, 0.18497109826589594, 0.046242774566473986, 0.055876685934489405, 0.05202312138728324, 0.05394990366088632, 0.06936416184971098, 0.07707129094412331, 0.08092485549132948, 0.08092485549132948, 0.08285163776493257, 0.08285163776493257, 0.08863198458574181, 0.37957610789980734], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IF2_assoc.gap.json b/pfam_gap_rates/IF2_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd2e14294ab62c96161a15947a98ffc8a9feee3f
--- /dev/null
+++ b/pfam_gap_rates/IF2_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "IF2_assoc", "n_seqs": 450, "length": 43, "gap_rates": [0.29777777777777775, 0.11333333333333333, 0.057777777777777775, 0.05333333333333334, 0.05333333333333334, 0.051111111111111114, 0.04666666666666667, 0.9488888888888889, 0.92, 0.042222222222222223, 0.042222222222222223, 0.7288888888888889, 0.02666666666666667, 0.022222222222222223, 0.013333333333333334, 0.011111111111111112, 0.011111111111111112, 0.0044444444444444444, 0.0044444444444444444, 0.02666666666666667, 0.11777777777777777, 0.09555555555555556, 0.06, 0.024444444444444446, 0.0, 0.9333333333333333, 0.028888888888888888, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0022222222222222222, 0.0022222222222222222, 0.0, 0.006666666666666667, 0.017777777777777778, 0.06444444444444444, 0.13111111111111112, 0.24666666666666667, 0.2822222222222222, 0.5533333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IGPS.gap.json b/pfam_gap_rates/IGPS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7a3ca853404f358a249678eb3623203507ea179
--- /dev/null
+++ b/pfam_gap_rates/IGPS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/IL1.gap.json b/pfam_gap_rates/IL1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..961826591802415156d9a2dc645fe40dea81ca3c
--- /dev/null
+++ b/pfam_gap_rates/IL1.gap.json
@@ -0,0 +1 @@
+{"family": "IL1", "n_seqs": 122, "length": 125, "gap_rates": [0.8442622950819673, 0.7868852459016393, 0.7131147540983607, 0.6885245901639344, 0.6475409836065574, 0.5983606557377049, 0.5737704918032787, 0.5409836065573771, 0.5, 0.48360655737704916, 0.48360655737704916, 0.47540983606557374, 0.45901639344262296, 0.4426229508196721, 0.4262295081967213, 0.4098360655737705, 0.39344262295081966, 0.3442622950819672, 0.5491803278688525, 0.4098360655737705, 0.3524590163934426, 0.2540983606557377, 0.1721311475409836, 0.1557377049180328, 0.12295081967213115, 0.10655737704918032, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.9098360655737705, 0.9016393442622951, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.05737704918032787, 0.040983606557377046, 0.040983606557377046, 0.9262295081967213, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.3114754098360656, 0.13114754098360656, 0.12295081967213115, 0.11475409836065574, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.12295081967213115, 0.05737704918032787, 0.04918032786885246, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.09016393442622951, 0.07377049180327869, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.03278688524590164, 0.00819672131147541, 0.00819672131147541, 0.16393442622950818, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.0, 0.0, 0.04918032786885246, 0.04918032786885246, 0.8524590163934426, 0.7540983606557377, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00819672131147541, 0.01639344262295082, 0.01639344262295082, 0.1557377049180328, 0.08196721311475409, 0.08196721311475409, 0.09016393442622951, 0.09016393442622951, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.32786885245901637, 0.2540983606557377, 0.14754098360655737, 0.18032786885245902, 0.2540983606557377, 0.2786885245901639, 0.47540983606557374, 0.28688524590163933, 0.3114754098360656, 0.32786885245901637, 0.3442622950819672, 0.4672131147540984, 0.680327868852459], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IL8.gap.json b/pfam_gap_rates/IL8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80954dd38cc4f128c414ca7589950c1dc5826bd7
--- /dev/null
+++ b/pfam_gap_rates/IL8.gap.json
@@ -0,0 +1 @@
+{"family": "IL8", "n_seqs": 463, "length": 65, "gap_rates": [0.8466522678185745, 0.1447084233261339, 0.09071274298056156, 0.673866090712743, 0.047516198704103674, 0.05399568034557235, 0.06047516198704104, 0.04319654427645788, 0.047516198704103674, 0.032397408207343416, 0.056155507559395246, 0.9438444924406048, 0.1490280777537797, 0.023758099352051837, 0.9460043196544277, 0.03455723542116631, 0.019438444924406047, 0.019438444924406047, 0.019438444924406047, 0.017278617710583154, 0.02159827213822894, 0.017278617710583154, 0.017278617710583154, 0.017278617710583154, 0.4298056155507559, 0.16414686825053995, 0.3023758099352052, 0.04967602591792657, 0.04535637149028078, 0.04319654427645788, 0.019438444924406047, 0.019438444924406047, 0.023758099352051837, 0.017278617710583154, 0.06695464362850972, 0.01511879049676026, 0.012958963282937365, 0.02159827213822894, 0.019438444924406047, 0.017278617710583154, 0.017278617710583154, 0.02159827213822894, 0.9200863930885529, 0.038876889848812095, 0.028077753779697623, 0.02159827213822894, 0.9481641468682506, 0.047516198704103674, 0.02591792656587473, 0.023758099352051837, 0.023758099352051837, 0.023758099352051837, 0.023758099352051837, 0.023758099352051837, 0.028077753779697623, 0.03023758099352052, 0.032397408207343416, 0.03455723542116631, 0.04103671706263499, 0.04103671706263499, 0.06047516198704104, 0.0755939524838013, 0.11879049676025918, 0.27213822894168466, 0.5248380129589633], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IMCp.gap.json b/pfam_gap_rates/IMCp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73d7b664d0f7683c93bfde9e80da95f02a1357f0
--- /dev/null
+++ b/pfam_gap_rates/IMCp.gap.json
@@ -0,0 +1 @@
+{"family": "IMCp", "n_seqs": 254, "length": 100, "gap_rates": [0.5708661417322834, 0.484251968503937, 0.38188976377952755, 0.30708661417322836, 0.2874015748031496, 0.25196850393700787, 0.2283464566929134, 0.2047244094488189, 0.1889763779527559, 0.18110236220472442, 0.16141732283464566, 0.16141732283464566, 0.14173228346456693, 0.13385826771653545, 0.12992125984251968, 0.5590551181102362, 0.547244094488189, 0.10236220472440945, 0.09055118110236221, 0.07086614173228346, 0.051181102362204724, 0.04330708661417323, 0.04330708661417323, 0.04330708661417323, 0.04330708661417323, 0.03543307086614173, 0.031496062992125984, 0.9251968503937008, 0.003937007874015748, 0.003937007874015748, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.05905511811023622, 0.8307086614173228, 0.003937007874015748, 0.007874015748031496, 0.011811023622047244, 0.011811023622047244, 0.015748031496062992, 0.015748031496062992, 0.011811023622047244, 0.5866141732283464, 0.5826771653543307, 0.011811023622047244, 0.007874015748031496, 0.007874015748031496, 0.011811023622047244, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.027559055118110236, 0.027559055118110236, 0.03937007874015748, 0.03937007874015748, 0.04330708661417323, 0.047244094488188976, 0.051181102362204724, 0.05905511811023622, 0.4015748031496063, 0.46062992125984253, 0.2440944881889764, 0.25984251968503935, 0.25984251968503935, 0.25196850393700787, 0.25984251968503935, 0.25984251968503935, 0.25984251968503935, 0.2677165354330709, 0.27165354330708663, 0.3110236220472441, 0.32677165354330706, 0.33858267716535434, 0.35826771653543305, 0.3661417322834646, 0.889763779527559, 0.8858267716535433, 0.38976377952755903, 0.421259842519685, 0.42913385826771655, 0.4448818897637795, 0.4645669291338583, 0.47244094488188976, 0.4763779527559055, 0.4763779527559055, 0.484251968503937, 0.49606299212598426, 0.5039370078740157, 0.5118110236220472, 0.5275590551181102, 0.547244094488189, 0.5748031496062992, 0.6023622047244095, 0.8149606299212598], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/INCENP_ARK-bind.gap.json b/pfam_gap_rates/INCENP_ARK-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..31f29d0a33bf3bb821f14b4d6650b415184e3105
--- /dev/null
+++ b/pfam_gap_rates/INCENP_ARK-bind.gap.json
@@ -0,0 +1 @@
+{"family": "INCENP_ARK-bind", "n_seqs": 307, "length": 71, "gap_rates": [0.46254071661237783, 0.3778501628664495, 0.26058631921824105, 0.15960912052117263, 0.13355048859934854, 0.11074918566775244, 0.08469055374592833, 0.08143322475570032, 0.0749185667752443, 0.08143322475570032, 0.08143322475570032, 0.08794788273615635, 0.06840390879478828, 0.6156351791530945, 0.8013029315960912, 0.8762214983713354, 0.9153094462540716, 0.9478827361563518, 0.8990228013029316, 0.8534201954397395, 0.739413680781759, 0.5276872964169381, 0.1465798045602606, 0.10097719869706841, 0.0781758957654723, 0.04560260586319218, 0.019543973941368076, 0.009771986970684038, 0.009771986970684038, 0.009771986970684038, 0.016286644951140065, 0.019543973941368076, 0.013029315960912053, 0.009771986970684038, 0.016286644951140065, 0.013029315960912053, 0.013029315960912053, 0.019543973941368076, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.7100977198697068, 0.9478827361563518, 0.8403908794788274, 0.6710097719869706, 0.013029315960912053, 0.013029315960912053, 0.009771986970684038, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.8892508143322475, 0.019543973941368076, 0.019543973941368076, 0.9315960912052117, 0.03908794788273615, 0.03908794788273615, 0.9381107491856677, 0.04560260586319218, 0.05863192182410423, 0.05863192182410423, 0.05863192182410423, 0.0749185667752443, 0.08143322475570032, 0.11400651465798045, 0.1791530944625407], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IPP-2.gap.json b/pfam_gap_rates/IPP-2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd0a21e07a8dd5381a83ec1945a151229e0f550c
--- /dev/null
+++ b/pfam_gap_rates/IPP-2.gap.json
@@ -0,0 +1 @@
+{"family": "IPP-2", "n_seqs": 369, "length": 243, "gap_rates": [0.5176151761517616, 0.1002710027100271, 0.07859078590785908, 0.07588075880758807, 0.07588075880758807, 0.05420054200542006, 0.05420054200542006, 0.34959349593495936, 0.8888888888888888, 0.8753387533875339, 0.20596205962059622, 0.13279132791327913, 0.07588075880758807, 0.05420054200542006, 0.05420054200542006, 0.3062330623306233, 0.2953929539295393, 0.10840108401084012, 0.08401084010840108, 0.2981029810298103, 0.2845528455284553, 0.15447154471544716, 0.15176151761517614, 0.14905149051490515, 0.04065040650406504, 0.04065040650406504, 0.04336043360433604, 0.04336043360433604, 0.04336043360433604, 0.04336043360433604, 0.04336043360433604, 0.04336043360433604, 0.04336043360433604, 0.05420054200542006, 0.04607046070460705, 0.04336043360433604, 0.08401084010840108, 0.08672086720867209, 0.0921409214092141, 0.1111111111111111, 0.08672086720867209, 0.6260162601626016, 0.7831978319783198, 0.8509485094850948, 0.9051490514905149, 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0.7100271002710027], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IQ.gap.json b/pfam_gap_rates/IQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6069671a7d270dc553599f6c052016cc879dcf35
--- /dev/null
+++ b/pfam_gap_rates/IQ.gap.json
@@ -0,0 +1 @@
+{"family": "IQ", "n_seqs": 5000, "length": 21, "gap_rates": [0.7472, 0.288, 0.1178, 0.0398, 0.01, 0.0048, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0014, 0.0036, 0.0076, 0.0138, 0.0248, 0.0562, 0.1198, 0.3018, 0.6592], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Init_tRNA_PT.gap.json b/pfam_gap_rates/Init_tRNA_PT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1064820323a8b691119c98dbdd6822a1218e082
--- /dev/null
+++ b/pfam_gap_rates/Init_tRNA_PT.gap.json
@@ -0,0 +1 @@
+{"family": "Init_tRNA_PT", "n_seqs": 169, "length": 146, "gap_rates": [0.863905325443787, 0.33727810650887574, 0.20118343195266272, 0.14792899408284024, 0.1242603550295858, 0.1242603550295858, 0.08875739644970414, 0.08284023668639054, 0.07692307692307693, 0.07100591715976332, 0.9349112426035503, 0.0650887573964497, 0.0650887573964497, 0.05917159763313609, 0.9112426035502958, 0.05325443786982249, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.04142011834319527, 0.04142011834319527, 0.04142011834319527, 0.04142011834319527, 0.03550295857988166, 0.03550295857988166, 0.04142011834319527, 0.04142011834319527, 0.03550295857988166, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.08875739644970414, 0.09467455621301775, 0.10650887573964497, 0.11242603550295859, 0.1242603550295858, 0.5976331360946746, 0.7810650887573964, 0.8402366863905325, 0.9053254437869822, 0.9230769230769231, 0.9053254437869822, 0.863905325443787, 0.8165680473372781, 0.7633136094674556, 0.4911242603550296, 0.05917159763313609, 0.047337278106508875, 0.01775147928994083, 0.011834319526627219, 0.01775147928994083, 0.023668639053254437, 0.023668639053254437, 0.005917159763313609, 0.005917159763313609, 0.9467455621301775, 0.011834319526627219, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.9171597633136095, 0.10059171597633136, 0.11242603550295859, 0.11242603550295859, 0.5502958579881657, 0.8047337278106509, 0.9289940828402367, 0.8816568047337278, 0.650887573964497, 0.30177514792899407, 0.08284023668639054, 0.4378698224852071, 0.23076923076923078, 0.7810650887573964, 0.8698224852071006, 0.8994082840236687, 0.9112426035502958, 0.9112426035502958, 0.9171597633136095, 0.9171597633136095, 0.9289940828402367, 0.9467455621301775, 0.9289940828402367, 0.9171597633136095, 0.9171597633136095, 0.9112426035502958, 0.9112426035502958, 0.8994082840236687, 0.8284023668639053, 0.6982248520710059, 0.10650887573964497, 0.09467455621301775, 0.09467455621301775, 0.08284023668639054, 0.08284023668639054, 0.07692307692307693, 0.07692307692307693, 0.07100591715976332, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.1242603550295858, 0.07692307692307693, 0.08284023668639054, 0.9467455621301775, 0.07692307692307693, 0.07692307692307693, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08875739644970414, 0.08875739644970414, 0.08875739644970414, 0.10059171597633136, 0.22485207100591717], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ins134_P3_kin.gap.json b/pfam_gap_rates/Ins134_P3_kin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d569a3de098d9fa71e4e0576553ecb7b7da9716
--- /dev/null
+++ b/pfam_gap_rates/Ins134_P3_kin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Intein_splicing.gap.json b/pfam_gap_rates/Intein_splicing.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8be10e45f872e5e568a39eb0671864fe2e854dea
--- /dev/null
+++ b/pfam_gap_rates/Intein_splicing.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ipi1_N.gap.json b/pfam_gap_rates/Ipi1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea3807fdfc92a08c11d5444a4f8f01ad19deacf3
--- /dev/null
+++ b/pfam_gap_rates/Ipi1_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ipi1_N", "n_seqs": 253, "length": 136, "gap_rates": [0.9367588932806324, 0.42292490118577075, 0.1857707509881423, 0.15810276679841898, 0.11857707509881422, 0.09881422924901186, 0.06719367588932806, 0.03557312252964427, 0.03557312252964427, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.015810276679841896, 0.011857707509881422, 0.011857707509881422, 0.007905138339920948, 0.007905138339920948, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.007905138339920948, 0.007905138339920948, 0.003952569169960474, 0.003952569169960474, 0.45849802371541504, 0.15810276679841898, 0.13043478260869565, 0.09090909090909091, 0.10276679841897234, 0.7391304347826086, 0.6640316205533597, 0.08695652173913043, 0.02766798418972332, 0.782608695652174, 0.782608695652174, 0.8656126482213439, 0.8735177865612648, 0.9209486166007905, 0.9367588932806324, 0.9407114624505929, 0.9407114624505929, 0.9367588932806324, 0.9169960474308301, 0.8735177865612648, 0.841897233201581, 0.782608695652174, 0.7391304347826086, 0.015810276679841896, 0.015810276679841896, 0.015810276679841896, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.023715415019762844, 0.023715415019762844, 0.023715415019762844, 0.03162055335968379, 0.039525691699604744, 0.043478260869565216, 0.4308300395256917, 0.5335968379446641, 0.7984189723320159, 0.857707509881423, 0.9209486166007905, 0.9288537549407114, 0.9446640316205533, 0.9367588932806324, 0.924901185770751, 0.9090909090909091, 0.8221343873517787, 0.6719367588932806, 0.45454545454545453, 0.35177865612648224, 0.05138339920948617, 0.2766798418972332, 0.25691699604743085, 0.25296442687747034, 0.26877470355731226, 0.28063241106719367, 0.3675889328063241, 0.4505928853754941, 0.47035573122529645, 0.6521739130434783, 0.7786561264822134, 0.8774703557312253, 0.9407114624505929, 0.9486166007905138, 0.9209486166007905, 0.849802371541502, 0.7154150197628458, 0.6126482213438735, 0.3241106719367589, 0.2766798418972332, 0.2648221343873518, 0.25691699604743085, 0.2648221343873518, 0.25691699604743085, 0.25296442687747034, 0.2608695652173913, 0.2608695652173913, 0.6007905138339921, 0.2608695652173913, 0.2648221343873518, 0.26877470355731226, 0.2727272727272727, 0.2727272727272727, 0.2766798418972332, 0.2845849802371542, 0.2845849802371542, 0.2885375494071146, 0.2924901185770751, 0.2924901185770751, 0.30039525691699603, 0.30039525691699603, 0.31225296442687744, 0.32806324110671936, 0.3952569169960474], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ish1.gap.json b/pfam_gap_rates/Ish1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..868fffbe64bdfc02bde4a82b63ab7390d93548e1
--- /dev/null
+++ b/pfam_gap_rates/Ish1.gap.json
@@ -0,0 +1 @@
+{"family": "Ish1", "n_seqs": 663, "length": 41, "gap_rates": [0.3137254901960784, 0.13574660633484162, 0.048265460030165915, 0.00904977375565611, 0.00904977375565611, 0.007541478129713424, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.0030165912518853697, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007541478129713424, 0.00904977375565611, 0.22322775263951736, 0.5656108597285068, 0.010558069381598794, 0.00904977375565611, 0.00904977375565611, 0.0030165912518853697, 0.9291101055806938, 0.942684766214178, 0.9396681749622926, 0.9155354449472096, 0.0030165912518853697, 0.0015082956259426848, 0.0015082956259426848, 0.0015082956259426848, 0.004524886877828055, 0.004524886877828055, 0.006033182503770739, 0.00904977375565611, 0.015082956259426848, 0.04524886877828054, 0.1191553544494721, 0.37104072398190047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Jacalin.gap.json b/pfam_gap_rates/Jacalin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..117bc0fb3f20c6d0c46fb582fa7e3328896fe503
--- /dev/null
+++ b/pfam_gap_rates/Jacalin.gap.json
@@ -0,0 +1 @@
+{"family": "Jacalin", "n_seqs": 903, "length": 148, "gap_rates": [0.6954595791805094, 0.6223698781838317, 0.5669988925802879, 0.5514950166112956, 0.530454042081949, 0.5193798449612403, 0.5149501661129569, 0.9102990033222591, 0.4950166112956811, 0.4717607973421927, 0.4485049833887043, 0.4174972314507198, 0.4008859357696567, 0.37320044296788485, 0.34994462901439644, 0.3333333333333333, 0.31118493909191586, 0.2978959025470653, 0.2967884828349945, 0.2812846068660022, 0.28017718715393136, 0.27906976744186046, 0.28017718715393136, 0.26245847176079734, 0.23588039867109634, 0.27464008859357697, 0.21483942414174972, 0.21373200442967885, 0.21373200442967885, 0.21040974529346623, 0.20930232558139536, 0.2059800664451827, 0.20376522702104097, 0.19712070874861573, 0.26799557032115173, 0.26245847176079734, 0.23588039867109634, 0.43853820598006643, 0.39424141749723146, 0.19712070874861573, 0.17940199335548174, 0.16500553709856036, 0.14285714285714285, 0.12513842746400886, 0.11517165005537099, 0.10963455149501661, 0.10520487264673312, 0.10741971207087486, 0.10963455149501661, 0.8571428571428571, 0.9479512735326688, 0.9036544850498339, 0.7807308970099668, 0.3842746400885936, 0.1362126245847176, 0.09745293466223699, 0.0753045404208195, 0.06866002214839424, 0.0664451827242525, 0.047619047619047616, 0.035437430786267994, 0.03765227021040975, 0.3643410852713178, 0.08859357696567, 0.7563676633444075, 0.035437430786267994, 0.031007751937984496, 0.028792912513842746, 0.029900332225913623, 0.029900332225913623, 0.029900332225913623, 0.029900332225913623, 0.028792912513842746, 0.02768549280177187, 0.026578073089700997, 0.029900332225913623, 0.031007751937984496, 0.11738648947951273, 0.4418604651162791, 0.5514950166112956, 0.9424141749723145, 0.8648947951273532, 0.4008859357696567, 0.32447397563676633, 0.30564784053156147, 0.2292358803986711, 0.05647840531561462, 0.018826135105204873, 0.018826135105204873, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.015503875968992248, 0.015503875968992248, 0.014396456256921373, 0.014396456256921373, 0.014396456256921373, 0.13178294573643412, 0.021040974529346623, 0.019933554817275746, 0.2070874861572536, 0.029900332225913623, 0.029900332225913623, 0.018826135105204873, 0.8549280177187154, 0.9224806201550387, 0.8947951273532669, 0.7862679955703211, 0.3178294573643411, 0.03322259136212625, 0.028792912513842746, 0.02768549280177187, 0.02768549280177187, 0.028792912513842746, 0.028792912513842746, 0.028792912513842746, 0.03211517165005537, 0.04318936877076412, 0.07973421926910298, 0.574750830564784, 0.1362126245847176, 0.09634551495016612, 0.08084163898117387, 0.07308970099667775, 0.07308970099667775, 0.07308970099667775, 0.07198228128460686, 0.07419712070874862, 0.07862679955703211, 0.08305647840531562, 0.08416389811738649, 0.08527131782945736, 0.08859357696567, 0.8770764119601329, 0.09191583610188261, 0.09745293466223699, 0.09745293466223699, 0.09745293466223699, 0.09745293466223699, 0.09856035437430787, 0.11627906976744186, 0.12513842746400886, 0.15946843853820597, 0.2159468438538206, 0.37763012181616834, 0.7109634551495017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KRAB.gap.json b/pfam_gap_rates/KRAB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13f013d95f19ce657ba60286b57d329eebb554bb
--- /dev/null
+++ b/pfam_gap_rates/KRAB.gap.json
@@ -0,0 +1 @@
+{"family": "KRAB", "n_seqs": 2109, "length": 42, "gap_rates": [0.4879089615931721, 0.1716453295400664, 0.11474632527264106, 0.06306306306306306, 0.05547652916073969, 0.05073494547178758, 0.04694167852062589, 0.04504504504504504, 0.034613560929350404, 0.034613560929350404, 0.03224276908487435, 0.028923660502607872, 0.021337126600284494, 0.012328117591275486, 0.018018018018018018, 0.011853959222380275, 0.013276434329065908, 0.008060692271218587, 0.006164058795637743, 0.003319108582266477, 0.00948316737790422, 0.002844950213371266, 0.003319108582266477, 0.005689900426742532, 0.00474158368895211, 0.00474158368895211, 0.005689900426742532, 0.007112375533428165, 0.018018018018018018, 0.00995732574679943, 0.017543859649122806, 0.015173067804646752, 0.016121384542437174, 0.02370791844476055, 0.026078710289236605, 0.026078710289236605, 0.036036036036036036, 0.03982930298719772, 0.04694167852062589, 0.059743954480796585, 0.07871028923660503, 0.26126126126126126], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KduI.gap.json b/pfam_gap_rates/KduI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1820811363382ec00e904171c75fff4b57144b9b
--- /dev/null
+++ b/pfam_gap_rates/KduI.gap.json
@@ -0,0 +1 @@
+{"family": "KduI", "n_seqs": 726, "length": 295, "gap_rates": [0.9352617079889807, 0.9090909090909091, 0.8842975206611571, 0.859504132231405, 0.9022038567493113, 0.8305785123966942, 0.7286501377410468, 0.6542699724517906, 0.6074380165289256, 0.571625344352617, 0.5757575757575758, 0.9159779614325069, 0.8236914600550964, 0.546831955922865, 0.3925619834710744, 0.36363636363636365, 0.34710743801652894, 0.3333333333333333, 0.32644628099173556, 0.3154269972451791, 0.3154269972451791, 0.31129476584022037, 0.30991735537190085, 0.8732782369146006, 0.359504132231405, 0.3002754820936639, 0.25757575757575757, 0.2548209366391185, 0.25068870523415976, 0.24517906336088155, 0.2369146005509642, 0.2231404958677686, 0.21349862258953167, 0.18457300275482094, 0.1790633608815427, 0.16942148760330578, 0.16942148760330578, 0.16942148760330578, 0.16391184573002754, 0.16115702479338842, 0.15977961432506887, 0.14600550964187328, 0.12534435261707988, 0.10192837465564739, 0.06611570247933884, 0.7134986225895317, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Kelch_1.gap.json b/pfam_gap_rates/Kelch_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41d8d3727228ff6cd911596ad364861352fb3300
--- /dev/null
+++ b/pfam_gap_rates/Kelch_1.gap.json
@@ -0,0 +1 @@
+{"family": "Kelch_1", "n_seqs": 5000, "length": 53, "gap_rates": [0.5794, 0.3232, 0.2624, 0.2004, 0.1504, 0.121, 0.1036, 0.0918, 0.0856, 0.0766, 0.06, 0.042, 0.0286, 0.0124, 0.01, 0.0076, 0.0042, 0.0038, 0.0032, 0.0034, 0.0038, 0.0112, 0.7308, 0.8588, 0.9238, 0.942, 0.8938, 0.8322, 0.5582, 0.0648, 0.0244, 0.0148, 0.007, 0.0048, 0.0026, 0.0028, 0.0036, 0.0058, 0.0072, 0.0106, 0.0182, 0.0222, 0.0252, 0.0286, 0.0342, 0.0378, 0.0558, 0.1028, 0.1458, 0.2216, 0.271, 0.344, 0.6364], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Kinesin_assoc.gap.json b/pfam_gap_rates/Kinesin_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88337b4f2a932fabdd020f50a91f281fed6653ed
--- /dev/null
+++ b/pfam_gap_rates/Kinesin_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "Kinesin_assoc", "n_seqs": 510, "length": 181, "gap_rates": [0.6352941176470588, 0.6313725490196078, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6294117647058823, 0.6509803921568628, 0.6647058823529411, 0.6647058823529411, 0.6647058823529411, 0.6725490196078432, 0.7137254901960784, 0.7254901960784313, 0.7294117647058823, 0.7333333333333333, 0.7823529411764706, 0.788235294117647, 0.8686274509803922, 0.8803921568627451, 0.8450980392156863, 0.8431372549019608, 0.8450980392156863, 0.8176470588235294, 0.8274509803921568, 0.8529411764705882, 0.8529411764705882, 0.8568627450980392, 0.8745098039215686, 0.8666666666666667, 0.8588235294117647, 0.8529411764705882, 0.8568627450980392, 0.8509803921568627, 0.8470588235294118, 0.8450980392156863, 0.8588235294117647, 0.8509803921568627, 0.8588235294117647, 0.8490196078431372, 0.8372549019607843, 0.8392156862745098, 0.8274509803921568, 0.8254901960784313, 0.8235294117647058, 0.8137254901960784, 0.8117647058823529, 0.8117647058823529, 0.8098039215686275, 0.8156862745098039, 0.8098039215686275, 0.803921568627451, 0.796078431372549, 0.7980392156862746, 0.7941176470588235, 0.7725490196078432, 0.7568627450980392, 0.7431372549019608, 0.7450980392156863, 0.7294117647058823, 0.7235294117647059, 0.7137254901960784, 0.7019607843137254, 0.7058823529411765, 0.6862745098039216, 0.6627450980392157, 0.6450980392156863, 0.6254901960784314, 0.596078431372549, 0.5784313725490197, 0.803921568627451, 0.6058823529411764, 0.5784313725490197, 0.5392156862745098, 0.46862745098039216, 0.43529411764705883, 0.3980392156862745, 0.3352941176470588, 0.33137254901960783, 0.30392156862745096, 0.27058823529411763, 0.2372549019607843, 0.23137254901960785, 0.23137254901960785, 0.23137254901960785, 0.22549019607843138, 0.22549019607843138, 0.2235294117647059, 0.2235294117647059, 0.22156862745098038, 0.22156862745098038, 0.22156862745098038, 0.2196078431372549, 0.21764705882352942, 0.21764705882352942, 0.21764705882352942, 0.21764705882352942, 0.21764705882352942, 0.21764705882352942, 0.21764705882352942, 0.21764705882352942, 0.21764705882352942, 0.21764705882352942, 0.21764705882352942, 0.22156862745098038, 0.22156862745098038, 0.22549019607843138, 0.2235294117647059, 0.22745098039215686, 0.22549019607843138, 0.2235294117647059, 0.22941176470588234, 0.23137254901960785, 0.22941176470588234, 0.22941176470588234, 0.22941176470588234, 0.22941176470588234, 0.22941176470588234, 0.22941176470588234, 0.23529411764705882, 0.23333333333333334, 0.23529411764705882, 0.2372549019607843, 0.2372549019607843, 0.3627450980392157, 0.6666666666666666, 0.5372549019607843, 0.4196078431372549, 0.4176470588235294, 0.30196078431372547, 0.3686274509803922, 0.37254901960784315, 0.37254901960784315, 0.3627450980392157, 0.23921568627450981, 0.2372549019607843, 0.22941176470588234, 0.2411764705882353, 0.23333333333333334, 0.23333333333333334, 0.23333333333333334, 0.23333333333333334, 0.23333333333333334, 0.2411764705882353, 0.24901960784313726, 0.2411764705882353, 0.24313725490196078, 0.24313725490196078, 0.24313725490196078, 0.24313725490196078, 0.24313725490196078, 0.24313725490196078, 0.24313725490196078, 0.24509803921568626, 0.24509803921568626, 0.24509803921568626, 0.24509803921568626, 0.2529411764705882, 0.3215686274509804, 0.4568627450980392, 0.7588235294117647], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Kri1_C.gap.json b/pfam_gap_rates/Kri1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11c34767716ad87883bf2362f3dd3cb9107b3303
--- /dev/null
+++ b/pfam_gap_rates/Kri1_C.gap.json
@@ -0,0 +1 @@
+{"family": "Kri1_C", "n_seqs": 312, "length": 100, "gap_rates": [0.8173076923076923, 0.40064102564102566, 0.16025641025641027, 0.10897435897435898, 0.09615384615384616, 0.08012820512820513, 0.060897435897435896, 0.05448717948717949, 0.04807692307692308, 0.04807692307692308, 0.09935897435897435, 0.07371794871794872, 0.028846153846153848, 0.028846153846153848, 0.03205128205128205, 0.035256410256410256, 0.057692307692307696, 0.060897435897435896, 0.04487179487179487, 0.8076923076923077, 0.8878205128205128, 0.9391025641025641, 0.9102564102564102, 0.8525641025641025, 0.75, 0.02564102564102564, 0.8878205128205128, 0.9391025641025641, 0.907051282051282, 0.8012820512820513, 0.016025641025641024, 0.01282051282051282, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.01282051282051282, 0.01282051282051282, 0.009615384615384616, 0.009615384615384616, 0.016025641025641024, 0.016025641025641024, 0.019230769230769232, 0.019230769230769232, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.009615384615384616, 0.003205128205128205, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.009615384615384616, 0.009615384615384616, 0.9102564102564102, 0.009615384615384616, 0.009615384615384616, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.022435897435897436, 0.022435897435897436, 0.03205128205128205, 0.035256410256410256, 0.038461538461538464, 0.041666666666666664, 0.04487179487179487, 0.08974358974358974, 0.08333333333333333, 0.08653846153846154, 0.09935897435897435, 0.09294871794871795, 0.09935897435897435, 0.09615384615384616, 0.11538461538461539, 0.125, 0.125, 0.14423076923076922, 0.16025641025641027, 0.1987179487179487, 0.21794871794871795, 0.25, 0.27564102564102566, 0.28205128205128205, 0.3269230769230769, 0.3814102564102564, 0.4583333333333333, 0.5801282051282052, 0.8269230769230769], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ku_C.gap.json b/pfam_gap_rates/Ku_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72852bc581afcb90e81754e3b6d829862174bbb6
--- /dev/null
+++ b/pfam_gap_rates/Ku_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ku_C", "n_seqs": 360, "length": 110, "gap_rates": [0.7638888888888888, 0.18333333333333332, 0.12222222222222222, 0.08888888888888889, 0.08055555555555556, 0.04722222222222222, 0.03611111111111111, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.013888888888888888, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.008333333333333333, 0.008333333333333333, 0.011111111111111112, 0.011111111111111112, 0.030555555555555555, 0.06111111111111111, 0.6944444444444444, 0.75, 0.7611111111111111, 0.7333333333333333, 0.625, 0.011111111111111112, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.019444444444444445, 0.019444444444444445, 0.019444444444444445, 0.016666666666666666, 0.022222222222222223, 0.9083333333333333, 0.8972222222222223, 0.2222222222222222, 0.027777777777777776, 0.025, 0.025, 0.044444444444444446, 0.030555555555555555, 0.03611111111111111, 0.04722222222222222, 0.9138888888888889, 0.09166666666666666, 0.05277777777777778, 0.058333333333333334, 0.058333333333333334, 0.05277777777777778, 0.05555555555555555, 0.058333333333333334, 0.06388888888888888, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06388888888888888, 0.06944444444444445, 0.075, 0.08333333333333333, 0.09444444444444444, 0.10555555555555556, 0.24444444444444444, 0.29444444444444445, 0.6416666666666667, 0.75, 0.8472222222222222, 0.9333333333333333, 0.8972222222222223, 0.8222222222222222, 0.6861111111111111, 0.5083333333333333, 0.18333333333333332, 0.26944444444444443, 0.24166666666666667, 0.225, 0.21388888888888888, 0.2638888888888889, 0.275, 0.2777777777777778, 0.3333333333333333, 0.38055555555555554, 0.7611111111111111, 0.85, 0.95, 0.8888888888888888, 0.8027777777777778, 0.6833333333333333, 0.46944444444444444, 0.4777777777777778, 0.4638888888888889, 0.4722222222222222, 0.5138888888888888, 0.5833333333333334, 0.5166666666666667, 0.5388888888888889, 0.5694444444444444, 0.6194444444444445, 0.6638888888888889, 0.8694444444444445], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LCM.gap.json b/pfam_gap_rates/LCM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ab754942f5635b82337652562dfd1b9c18ba50a
--- /dev/null
+++ b/pfam_gap_rates/LCM.gap.json
@@ -0,0 +1 @@
+{"family": "LCM", "n_seqs": 1379, "length": 238, "gap_rates": [0.7229876722262509, 0.6410442349528644, 0.5612762871646121, 0.514140681653372, 0.4894851341551849, 0.4467005076142132, 0.4191443074691806, 0.40536620739666424, 0.3995649021029732, 0.39593908629441626, 0.39086294416243655, 0.3995649021029732, 0.3966642494561276, 0.3995649021029732, 0.4002900652646846, 0.8788977519941987, 0.7592458303118201, 0.6664249456127629, 0.34300217548948514, 0.3299492385786802, 0.3161711385061639, 0.312545322697607, 0.3103698332124728, 0.3052936910804931, 0.30311820159535896, 0.3009427121102248, 0.29804205946337925, 0.29296591733139954, 0.2871646120377085, 0.2857142857142857, 0.2886149383611313, 0.2893401015228426, 0.2907904278462654, 0.290065264684554, 0.32414793328498914, 0.3488034807831762, 0.39158810732414795, 0.46410442349528647, 0.7374909354604786, 0.9456127628716461, 0.9361856417693981, 0.7367657722987673, 0.6997824510514866, 0.6693255982596084, 0.6511965192168238, 0.6381435823060189, 0.5794053662073967, 0.612037708484409, 0.6098622189992748, 0.621464829586657, 0.6265409717186367, 0.6874546773023931, 0.7396664249456127, 0.8723712835387962, 0.7810007251631617, 0.9477882523567803, 0.7048585931834663, 0.6424945612762871, 0.5663524292965917, 0.4691805656272661, 0.3821609862218999, 0.2907904278462654, 0.20812182741116753, 0.17041334300217548, 0.1559100797679478, 0.14648295866569977, 0.1414068165337201, 0.1305293691080493, 0.12472806381435823, 0.10804931109499638, 0.10079767947788253, 0.09644670050761421, 0.09427121102248005, 0.09282088469905729, 0.08992023205221175, 0.08919506889050036, 0.08629441624365482, 0.08556925308194344, 0.08411892675852067, 0.08121827411167512, 0.07976794778825236, 0.07904278462654098, 0.08049311094996374, 0.08194343727338652, 0.08194343727338652, 0.0826686004350979, 0.7331399564902102, 0.39593908629441626, 0.21464829586656997, 0.11457577955039884, 0.09427121102248005, 0.8129079042784626, 0.8861493836113126, 0.9289340101522843, 0.9470630891950689, 0.9129804205946338, 0.8614938361131255, 0.7534445250181291, 0.07469180565627266, 0.10877447425670776, 0.06091370558375635, 0.05801305293691081, 0.05801305293691081, 0.05438723712835388, 0.05366207396664249, 0.05293691080493111, 0.05293691080493111, 0.05366207396664249, 0.05003625815808557, 0.05366207396664249, 0.05293691080493111, 0.050761421319796954, 0.05003625815808557, 0.05583756345177665, 0.049311094996374184, 0.050761421319796954, 0.049311094996374184, 0.050761421319796954, 0.05583756345177665, 0.1899927483683829, 0.6990572878897752, 0.8839738941261784, 0.9231327048585932, 0.8013052936910805, 0.5699782451051486, 0.05511240029006526, 0.04713560551124003, 0.05293691080493111, 0.03843364757070341, 0.03770848440899202, 0.03698332124728064, 0.03698332124728064, 0.03553299492385787, 0.03553299492385787, 0.03625815808556925, 0.03553299492385787, 0.03915881073241479, 0.03770848440899202, 0.03698332124728064, 0.03698332124728064, 0.03770848440899202, 0.03843364757070341, 0.03988397389412618, 0.03988397389412618, 0.044960116026105876, 0.0674401740391588, 0.12980420594633793, 0.13705583756345177, 0.13343002175489485, 0.17113850616388687, 0.19361856417693982, 0.18419144307469182, 0.1551849166062364, 0.6446700507614214, 0.662799129804206, 0.6845540246555475, 0.6903553299492385, 0.7055837563451777, 0.7106598984771574, 0.719361856417694, 0.7461928934010152, 0.8085569253081943, 0.8977519941986947, 0.9267585206671501, 0.9427121102248006, 0.9470630891950689, 0.934010152284264, 0.9151559100797679, 0.8767222625090645, 0.7650471356055112, 0.7324147933284989, 0.7157360406091371, 0.706308919506889, 0.6990572878897752, 0.6852791878172588, 0.6773023930384336, 0.6519216823785352, 0.6439448875997099, 0.1892675852066715, 0.15663524292965916, 0.1065989847715736, 0.08556925308194344, 0.07614213197969544, 0.8861493836113126, 0.8759970993473531, 0.05873821609862219, 0.05366207396664249, 0.05438723712835388, 0.05293691080493111, 0.05801305293691081, 0.05583756345177665, 0.25090645395213923, 0.9477882523567803, 0.6925308194343728, 0.09282088469905729, 0.08049311094996374, 0.05366207396664249, 0.05366207396664249, 0.05801305293691081, 0.06018854242204496, 0.06961566352429296, 0.09064539521392313, 0.10732414793328499, 0.11892675852066716, 0.9361856417693981, 0.8977519941986947, 0.26178390137781, 0.24147933284989123, 0.20232052211747642, 0.19724437998549674, 0.12545322697606962, 0.07904278462654098, 0.06453952139231327, 0.06163886874546773, 0.06091370558375635, 0.06236403190717912, 0.06236403190717912, 0.06236403190717912, 0.06598984771573604, 0.0681653372008702, 0.0681653372008702, 0.08194343727338652, 0.08629441624365482, 0.08846990572878898, 0.08919506889050036, 0.08919506889050036, 0.09209572153734591, 0.09499637418419145, 0.09789702683103699, 0.10152284263959391, 0.1065989847715736, 0.11240029006526468, 0.116751269035533, 0.12545322697606962, 0.1602610587382161, 0.23930384336475707, 0.4227701232777375, 0.8825235678027556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LLGL.gap.json b/pfam_gap_rates/LLGL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5cbd6440c1f14e0aae549ad180bc7988745cc7af
--- /dev/null
+++ b/pfam_gap_rates/LLGL.gap.json
@@ -0,0 +1 @@
+{"family": "LLGL", "n_seqs": 213, "length": 121, "gap_rates": [0.5164319248826291, 0.3145539906103286, 0.2347417840375587, 0.22535211267605634, 0.215962441314554, 0.6948356807511737, 0.6995305164319249, 0.7183098591549296, 0.8169014084507042, 0.7230046948356808, 0.6995305164319249, 0.6948356807511737, 0.6948356807511737, 0.22065727699530516, 0.1784037558685446, 0.1643192488262911, 0.15492957746478872, 0.14553990610328638, 0.14553990610328638, 0.14553990610328638, 0.14553990610328638, 0.14084507042253522, 0.14084507042253522, 0.14084507042253522, 0.14084507042253522, 0.14084507042253522, 0.14084507042253522, 0.14084507042253522, 0.14553990610328638, 0.39436619718309857, 0.24882629107981222, 0.6197183098591549, 0.18309859154929578, 0.12206572769953052, 0.10328638497652583, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.0892018779342723, 0.08450704225352113, 0.08450704225352113, 0.07042253521126761, 0.07042253521126761, 0.10328638497652583, 0.07042253521126761, 0.07042253521126761, 0.1267605633802817, 0.06572769953051644, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.04225352112676056, 0.8779342723004695, 0.046948356807511735, 0.046948356807511735, 0.9154929577464789, 0.04225352112676056, 0.04225352112676056, 0.06103286384976526, 0.06103286384976526, 0.056338028169014086, 0.051643192488262914, 0.051643192488262914, 0.046948356807511735, 0.046948356807511735, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.051643192488262914, 0.06572769953051644, 0.07042253521126761, 0.07981220657276995, 0.8779342723004695, 0.27230046948356806, 0.22065727699530516, 0.19248826291079812, 0.6525821596244131, 0.1643192488262911, 0.15023474178403756, 0.11737089201877934, 0.9248826291079812, 0.9389671361502347, 0.9436619718309859, 0.9436619718309859, 0.9389671361502347, 0.9295774647887324, 0.9154929577464789, 0.09859154929577464, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09389671361502347, 0.09859154929577464, 0.107981220657277, 0.13145539906103287, 0.23943661971830985], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LPAM_2.gap.json b/pfam_gap_rates/LPAM_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4973dd21fcba5f79952ee67e4bcb580bee87e2e8
--- /dev/null
+++ b/pfam_gap_rates/LPAM_2.gap.json
@@ -0,0 +1 @@
+{"family": "LPAM_2", "n_seqs": 153, "length": 23, "gap_rates": [0.6993464052287581, 0.29411764705882354, 0.1437908496732026, 0.0457516339869281, 0.0196078431372549, 0.0196078431372549, 0.013071895424836602, 0.013071895424836602, 0.006535947712418301, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0196078431372549, 0.0392156862745098], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRR_1.gap.json b/pfam_gap_rates/LRR_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d14bb735144d364fd278897675b44478886dff75
--- /dev/null
+++ b/pfam_gap_rates/LRR_1.gap.json
@@ -0,0 +1 @@
+{"family": "LRR_1", "n_seqs": 5000, "length": 23, "gap_rates": [0.3548, 0.0392, 0.0158, 0.0026, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0028, 0.0302, 0.0256, 0.0266, 0.0298, 0.0402, 0.0698, 0.1054, 0.144, 0.2528, 0.3738, 0.5224], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRR_3.gap.json b/pfam_gap_rates/LRR_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b89fefa3d9e25ef5b9c69fffa8f6f5b7e5f7d99
--- /dev/null
+++ b/pfam_gap_rates/LRR_3.gap.json
@@ -0,0 +1 @@
+{"family": "LRR_3", "n_seqs": 235, "length": 20, "gap_rates": [0.2, 0.00851063829787234, 0.00425531914893617, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00425531914893617, 0.01702127659574468, 0.02127659574468085, 0.10212765957446808, 0.23404255319148937], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRR_9.gap.json b/pfam_gap_rates/LRR_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03169b8534b7a7a730ffb36557bd6eba40214960
--- /dev/null
+++ b/pfam_gap_rates/LRR_9.gap.json
@@ -0,0 +1 @@
+{"family": "LRR_9", "n_seqs": 2083, "length": 176, "gap_rates": [0.9183869419107057, 0.914066250600096, 0.8319731156985117, 0.828132501200192, 0.8247719635141623, 0.8228516562650025, 0.8190110417666827, 0.8170907345175228, 0.813250120019203, 0.8122899663946231, 0.8108497359577532, 0.8098895823331733, 0.8074891982717235, 0.8050888142102737, 0.8041286605856938, 0.799807969275084, 0.7954872779644743, 0.7902064330292847, 0.7825252040326452, 0.7762842054728757, 0.7690830532885262, 0.7090734517522803, 0.6697071531445031, 0.6063370139222276, 0.5876140182429188, 0.5732117138742199, 0.5674507921267403, 0.557369179068651, 0.5525684109457513, 0.5482477196351416, 0.5458473355736918, 0.5400864138262121, 0.5352856457033125, 0.5237638022083534, 0.5208833413346136, 0.5228036485837734, 0.5156024963994239, 0.5218434949591935, 0.5972155544887182, 0.5453672587614018, 0.5060009601536246, 0.4930388862217955, 0.4685549687950072, 0.4488718194911186, 0.4157465194431109, 0.37493999039846376, 0.299567930868939, 0.26452232357177147, 0.22035525684109458, 0.21075372059529524, 0.19731156985117618, 0.18674987998079692, 0.17042726836293806, 0.16178588574171868, 0.15746519443110898, 0.15170427268362938, 0.14642342774843975, 0.14114258281325012, 0.13682189150264043, 0.13202112337974076, 0.12722035525684108, 0.11953912626020163, 0.10897743638982237, 0.09121459433509362, 0.08257321171387422, 0.0643302928468555, 0.0600096015362458, 0.0556889102256361, 0.052808449351896304, 0.0513682189150264, 0.04944791166586654, 0.04896783485357657, 0.04896783485357657, 0.04656745079212674, 0.04800768122899664, 0.05232837253960634, 0.06625060009601537, 0.07537205952952472, 0.08209313490158425, 0.1872299567930869, 0.1944311089774364, 0.1771483437349976, 0.12049927988478157, 0.1987518002880461, 0.171387421987518, 0.15890542486797887, 0.07633221315410466, 0.0542486797887662, 0.023523763802208355, 0.018242918867018725, 0.017762842054728757, 0.01632261161785886, 0.01584253480556889, 0.014882381180988958, 0.014882381180988958, 0.01584253480556889, 0.01584253480556889, 0.01632261161785886, 0.01584253480556889, 0.01584253480556889, 0.02112337974075852, 0.02160345655304849, 0.025444071051368217, 0.02688430148823812, 0.028324531925108018, 0.04272683629380701, 0.039846375420067214, 0.03648583773403745, 0.026404224675948152, 0.02784445511281805, 0.030244839174267884, 0.028804608737397985, 0.026404224675948152, 0.04080652904464714, 0.024483917426788286, 0.05232837253960634, 0.06240998559769563, 0.06337013922227556, 0.06240998559769563, 0.06385021603456553, 0.0657705232837254, 0.06721075372059529, 0.06769083053288526, 0.06961113778204513, 0.06865098415746519, 0.07633221315410466, 0.9491118578972636, 0.08305328852616418, 0.09121459433509362, 0.9275084013442151, 0.09553528564570331, 0.09697551608257321, 0.10033605376860298, 0.10321651464234277, 0.1041766682669227, 0.10609697551608258, 0.10609697551608258, 0.10657705232837254, 0.1084973595775324, 0.1099375900144023, 0.11089774363898224, 0.11041766682669227, 0.11329812770043207, 0.11521843494959194, 0.1185789726356217, 0.1257801248199712, 0.12770043206913106, 0.13682189150264043, 0.2241958713394143, 0.24243879020643302, 0.24915986557849257, 0.25780124819971195, 0.27124339894383104, 0.28228516562650025, 0.28900624099855976, 0.30100816130580893, 0.32021123379740757, 0.32645223235717713, 0.3418146903504561, 0.35813730196831495, 0.38502160345655306, 0.43158905424867977, 0.48391742678828614, 0.5252040326452232, 0.5760921747479597, 0.6322611617858858, 0.6831493038886222, 0.7253960633701392, 0.7700432069131061, 0.8065290446471436, 0.8382141142582813, 0.8694191070571291, 0.8900624099855977, 0.9107057129140662, 0.9270283245319251, 0.9467114738358138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LTP_2.gap.json b/pfam_gap_rates/LTP_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5671a5c2f2d65b8db2135b77d3086cf6c063144
--- /dev/null
+++ b/pfam_gap_rates/LTP_2.gap.json
@@ -0,0 +1 @@
+{"family": "LTP_2", "n_seqs": 1294, "length": 110, "gap_rates": [0.8075734157650696, 0.6661514683153014, 0.5625965996908809, 0.5108191653786708, 0.46367851622874806, 0.44049459041731065, 0.4234930448222566, 0.3979907264296754, 0.3693972179289026, 0.3608964451313756, 0.34853168469860896, 0.41190108191653785, 0.30989180834621327, 0.2635239567233385, 0.21792890262751158, 0.9466769706336939, 0.178516228748068, 0.16306027820710975, 0.14837712519319937, 0.1321483771251932, 0.1213292117465224, 0.11360123647604328, 0.9435857805255023, 0.9466769706336939, 0.9258114374034003, 0.09505409582689335, 0.08809891808346214, 0.10123647604327667, 0.9064914992272025, 0.10432766615146831, 0.07573415765069552, 0.06646058732612056, 0.06800618238021638, 0.3693972179289026, 0.3848531684698609, 0.31375579598145287, 0.0695517774343122, 0.05100463678516229, 0.9466769706336939, 0.9095826893353941, 0.04250386398763524, 0.04095826893353941, 0.04636785162287481, 0.7449768160741885, 0.8369397217928902, 0.43044822256568777, 0.02472952086553323, 0.021638330757341576, 0.019319938176197836, 0.01622874806800618, 0.012364760432766615, 0.010046367851622875, 0.006955177743431221, 0.0061823802163833074, 0.005409582689335394, 0.00463678516228748, 0.00463678516228748, 0.00463678516228748, 0.00463678516228748, 0.00463678516228748, 0.00463678516228748, 0.2751159196290572, 0.39180834621329214, 0.3516228748068006, 0.19088098918083463, 0.0015455950540958269, 0.0007727975270479134, 0.0015455950540958269, 0.0015455950540958269, 0.0030911901081916537, 0.0007727975270479134, 0.00231839258114374, 0.00463678516228748, 0.005409582689335394, 0.0030911901081916537, 0.008500772797527048, 0.02009273570324575, 0.03400309119010819, 0.7557959814528593, 0.9412673879443586, 0.6290571870170015, 0.23261205564142196, 0.07573415765069552, 0.05100463678516229, 0.04095826893353941, 0.2063369397217929, 0.03400309119010819, 0.0285935085007728, 0.02472952086553323, 0.025502318392581144, 0.02472952086553323, 0.02472952086553323, 0.025502318392581144, 0.02704791344667697, 0.02704791344667697, 0.027820710973724884, 0.02936630602782071, 0.030139103554868624, 0.03323029366306028, 0.03400309119010819, 0.04173106646058733, 0.0571870170015456, 0.13292117465224113, 0.17697063369397217, 0.2820710973724884, 0.9335394126738794, 0.6476043276661515, 0.44590417310664604, 0.3670788253477589, 0.3678516228748068], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LUD_dom.gap.json b/pfam_gap_rates/LUD_dom.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fdca856ea95692529bb0bc99c9bc10f2d970558c
--- /dev/null
+++ b/pfam_gap_rates/LUD_dom.gap.json
@@ -0,0 +1 @@
+{"family": "LUD_dom", "n_seqs": 1827, "length": 247, "gap_rates": [0.6973180076628352, 0.4696223316912972, 0.3251231527093596, 0.270935960591133, 0.26053639846743293, 0.2594417077175698, 0.25779967159277506, 0.2534209085933224, 0.2523262178434592, 0.2512315270935961, 0.2512315270935961, 0.24904214559386972, 0.24685276409414342, 0.24575807334428024, 0.24575807334428024, 0.24466338259441708, 0.24192665571975916, 0.24192665571975916, 0.23645320197044334, 0.2348111658456486, 0.3158182813355227, 0.23316912972085385, 0.23043240284619596, 0.23043240284619596, 0.22988505747126436, 0.2287903667214012, 0.2287903667214012, 0.22769567597153803, 0.22660098522167488, 0.22550629447181172, 0.22550629447181172, 0.2260536398467433, 0.2260536398467433, 0.22550629447181172, 0.2260536398467433, 0.2413793103448276, 0.23097974822112752, 0.555008210180624, 0.6026272577996716, 0.6048166392993979, 0.6091954022988506, 0.6102900930487137, 0.6113847837985769, 0.6113847837985769, 0.6195949644225506, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LacAB_rpiB.gap.json b/pfam_gap_rates/LacAB_rpiB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db268266257dc4893c6e90405f407dc8e16520d6
--- /dev/null
+++ b/pfam_gap_rates/LacAB_rpiB.gap.json
@@ -0,0 +1 @@
+{"family": "LacAB_rpiB", "n_seqs": 2201, "length": 142, "gap_rates": [0.13221263062244434, 0.04861426624261699, 0.04361653793730123, 0.04179918218991367, 0.040436165379373015, 0.040436165379373015, 0.039981826442526125, 0.040436165379373015, 0.04679691049522944, 0.03816447069513857, 0.03680145388459791, 0.034075420263516586, 0.033621081326669695, 0.03271240345297592, 0.03044070876874148, 0.02862335302135393, 0.02862335302135393, 0.029077691958200817, 0.02862335302135393, 0.02862335302135393, 0.028169014084507043, 0.029077691958200817, 0.93139482053612, 0.9173103134938664, 0.052248977737392094, 0.03589277601090413, 0.027714675147660156, 0.02680599727396638, 0.02680599727396638, 0.02680599727396638, 0.026351658337119492, 0.026351658337119492, 0.025897319400272602, 0.03271240345297592, 0.03634711494775102, 0.043162199000454336, 0.6628805088596093, 0.05815538391640163, 0.06951385733757383, 0.04543389368468878, 0.04134484325306679, 0.027714675147660156, 0.023171285779191277, 0.02271694684234439, 0.0222626079054975, 0.021808268968650613, 0.021808268968650613, 0.021808268968650613, 0.021353930031803726, 0.021353930031803726, 0.021353930031803726, 0.021808268968650613, 0.021808268968650613, 0.0222626079054975, 0.02271694684234439, 0.023625624716038164, 0.03452975920036347, 0.04361653793730123, 0.025897319400272602, 0.02271694684234439, 0.0222626079054975, 0.021808268968650613, 0.021808268968650613, 0.021808268968650613, 0.021808268968650613, 0.0222626079054975, 0.0222626079054975, 0.0222626079054975, 0.0222626079054975, 0.02271694684234439, 0.0222626079054975, 0.020899591094956836, 0.019990913221263062, 0.0186278964107224, 0.019082235347569285, 0.019082235347569285, 0.0186278964107224, 0.019082235347569285, 0.0186278964107224, 0.019990913221263062, 0.02044525215810995, 0.019990913221263062, 0.019536574284416176, 0.019082235347569285, 0.019082235347569285, 0.019082235347569285, 0.019082235347569285, 0.019082235347569285, 0.019990913221263062, 0.021353930031803726, 0.02044525215810995, 0.019990913221263062, 0.019536574284416176, 0.019082235347569285, 0.017264879600181735, 0.01635620172648796, 0.016810540663334848, 0.01635620172648796, 0.017264879600181735, 0.017264879600181735, 0.017719218537028625, 0.017719218537028625, 0.017719218537028625, 0.017264879600181735, 0.017264879600181735, 0.016810540663334848, 0.01635620172648796, 0.017264879600181735, 0.023625624716038164, 0.02407996365288505, 0.025442980463425715, 0.06860517946388005, 0.0595184007269423, 0.05860972285324852, 0.026351658337119492, 0.026351658337119492, 0.026351658337119492, 0.027260336210813266, 0.027714675147660156, 0.027714675147660156, 0.027714675147660156, 0.027714675147660156, 0.027714675147660156, 0.027714675147660156, 0.02862335302135393, 0.029077691958200817, 0.033621081326669695, 0.04770558836892322, 0.045888232621535664, 0.07632894139027714, 0.5620172648796001, 0.07950931394820536, 0.08087233075874603, 0.0854157201272149, 0.08450704225352113, 0.08677873693775556, 0.08905043162199, 0.08995910949568378, 0.09404815992730577, 0.10449795547478419, 0.17719218537028622, 0.2612448886869605], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Laminin_EGF.gap.json b/pfam_gap_rates/Laminin_EGF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d374baaf4354dcd0b857c40466f259bcefcc9384
--- /dev/null
+++ b/pfam_gap_rates/Laminin_EGF.gap.json
@@ -0,0 +1 @@
+{"family": "Laminin_EGF", "n_seqs": 5000, "length": 68, "gap_rates": [0.1058, 0.0984, 0.0804, 0.0804, 0.0808, 0.0812, 0.083, 0.4886, 0.4608, 0.4298, 0.843, 0.9322, 0.786, 0.1926, 0.0658, 0.059, 0.0614, 0.0604, 0.7506, 0.8134, 0.8546, 0.8806, 0.924, 0.9286, 0.8988, 0.8712, 0.8516, 0.7748, 0.7452, 0.1388, 0.0558, 0.0456, 0.0084, 0.005, 0.0034, 0.7578, 0.002, 0.0018, 0.0014, 0.0012, 0.0014, 0.0016, 0.002, 0.0022, 0.0026, 0.0036, 0.005, 0.0156, 0.9322, 0.0328, 0.035, 0.0384, 0.0444, 0.0478, 0.0562, 0.0748, 0.105, 0.3342, 0.3892, 0.9272, 0.9432, 0.8666, 0.4092, 0.4792, 0.5132, 0.633, 0.5574, 0.5566], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Laminin_G_2.gap.json b/pfam_gap_rates/Laminin_G_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e620e77213bb9e010efc2b4fa65e420b4f96ba5
--- /dev/null
+++ b/pfam_gap_rates/Laminin_G_2.gap.json
@@ -0,0 +1 @@
+{"family": "Laminin_G_2", "n_seqs": 3287, "length": 170, "gap_rates": [0.29966534834195313, 0.18831761484636447, 0.16671737146334042, 0.15759050806206268, 0.1493763310009127, 0.12442957103742014, 0.11317310617584424, 0.10465470033465166, 0.0955278369333739, 0.08700943109218132, 0.08579251597201096, 0.084271372071798, 0.08244599939154244, 0.08183754183145725, 0.07940371159111652, 0.7030727106784301, 0.8570124733799818, 0.9081229084271372, 0.9418923030118649, 0.9467599634925464, 0.9248554913294798, 0.8846972923638576, 0.803163979312443, 0.5226650441131732, 0.297535746881655, 0.10830544569516276, 0.07058107696988135, 0.06449650136902951, 0.061149984788561, 0.05841192576817767, 0.055369637967751746, 0.053544265287496194, 0.052935807727411015, 0.05141466382719805, 0.04806814724672954, 0.9218132035290538, 0.04685123212655917, 0.041679342865835106, 0.03863705506540919, 0.9494980225129297, 0.035290538484940674, 0.0343778521448129, 0.03133556434438698, 0.030727106784301794, 0.029814420444174018, 0.029814420444174018, 0.06693033160937024, 0.05384849406753879, 0.050806206267112866, 0.04046242774566474, 0.027380590203833283, 0.02585944630362032, 0.02829327654396106, 0.041679342865835106, 0.041679342865835106, 0.04533008822634621, 0.27289321569820507, 0.7846060237298449, 0.9111651962275631, 0.9443261332522057, 0.8600547611804077, 0.5698205050197749, 0.020687557042896258, 0.017341040462427744, 0.01673258290234256, 0.01186492242166109, 0.01673258290234256, 0.010952236081533314, 0.01064800730149072, 0.010952236081533314, 0.010343778521448129, 0.010343778521448129, 0.010343778521448129, 0.01064800730149072, 0.011560693641618497, 0.012473379981746273, 0.012169151201703681, 0.012777608761788866, 0.012777608761788866, 0.9081229084271372, 0.022817158503194403, 0.018253726802555523, 0.0191664131426833, 0.017036811682385154, 0.017036811682385154, 0.01947064192272589, 0.01794949802251293, 0.018557955582598113, 0.027989047763918466, 0.023425616063279586, 0.02251292972315181, 0.02555521752357773, 0.048980833586857314, 0.03194402190447216, 0.03376939458472771, 0.03772436872528141, 0.05171889260724064, 0.05597809552783693, 0.06510495892911469, 0.07909948281107393, 0.0763614237906906, 0.08609674475205355, 0.11773653787648311, 0.1907514450867052, 0.7201095223608154, 0.8168542744143596, 0.8570124733799818, 0.8749619714024947, 0.8947368421052632, 0.9078186796470946, 0.9190751445086706, 0.9230301186492242, 0.9418923030118649, 0.9458472771524186, 0.9431092181320353, 0.9397627015515668, 0.9215089747490113, 0.9132947976878613, 0.9020383328262853, 0.8856099787039854, 0.867964709461515, 0.8332826285366596, 0.7779129905689078, 0.6273197444478248, 0.18588378460602373, 0.09278977791299056, 0.07392759355034986, 0.06449650136902951, 0.05993306966839063, 0.058107696988135074, 0.05415272284758138, 0.05141466382719805, 0.05111043504715546, 0.05171889260724064, 0.055369637967751746, 0.057499239428049895, 0.6796470946151506, 0.8171585031944022, 0.8831761484636447, 0.9148159415880742, 0.8387587465774262, 0.7225433526011561, 0.5895953757225434, 0.44082750228171586, 0.3392150897474901, 0.27258898691816247, 0.2598113781563736, 0.23608153331305143, 0.22330392455126255, 0.19896562214785518, 0.18071189534529966, 0.11682385153635534, 0.09066017645269242, 0.08761788865226651, 0.08609674475205355, 0.08670520231213873, 0.08335868573167021, 0.0836629145117128, 0.084271372071798, 0.08487982963188317, 0.08609674475205355, 0.08670520231213873, 0.09887435351384241, 0.09857012473379982, 0.10465470033465166, 0.11317310617584424, 0.13264374809857013, 0.21052631578947367, 0.32613325220565864, 0.7757833891086097], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Leu_Phe_trans.gap.json b/pfam_gap_rates/Leu_Phe_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2760a9de671a72eff5d5f4799edb1269a521bedb
--- /dev/null
+++ b/pfam_gap_rates/Leu_Phe_trans.gap.json
@@ -0,0 +1 @@
+{"family": "Leu_Phe_trans", "n_seqs": 819, "length": 181, "gap_rates": [0.6837606837606838, 0.28815628815628813, 0.13064713064713065, 0.10256410256410256, 0.09523809523809523, 0.09401709401709402, 0.09035409035409035, 0.08547008547008547, 0.08547008547008547, 0.08302808302808302, 0.07936507936507936, 0.07814407814407814, 0.07814407814407814, 0.0757020757020757, 0.07448107448107448, 0.0757020757020757, 0.0757020757020757, 0.7313797313797313, 0.6837606837606838, 0.07448107448107448, 0.11233211233211234, 0.07081807081807082, 0.06349206349206349, 0.06227106227106227, 0.06105006105006105, 0.05982905982905983, 0.05860805860805861, 0.057387057387057384, 0.054945054945054944, 0.04884004884004884, 0.03907203907203907, 0.03540903540903541, 0.03296703296703297, 0.03296703296703297, 0.031746031746031744, 0.03296703296703297, 0.03418803418803419, 0.031746031746031744, 0.030525030525030524, 0.9120879120879121, 0.030525030525030524, 0.028083028083028084, 0.028083028083028084, 0.028083028083028084, 0.028083028083028084, 0.028083028083028084, 0.026862026862026864, 0.028083028083028084, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.026862026862026864, 0.14041514041514042, 0.9267399267399268, 0.927960927960928, 0.927960927960928, 0.9218559218559218, 0.13675213675213677, 0.028083028083028084, 0.028083028083028084, 0.026862026862026864, 0.026862026862026864, 0.026862026862026864, 0.026862026862026864, 0.026862026862026864, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02442002442002442, 0.02564102564102564, 0.02564102564102564, 0.02442002442002442, 0.02442002442002442, 0.028083028083028084, 0.18192918192918192, 0.21245421245421245, 0.7374847374847375, 0.20024420024420025, 0.10378510378510379, 0.0463980463980464, 0.7277167277167277, 0.5775335775335775, 0.029304029304029304, 0.02442002442002442, 0.02442002442002442, 0.0231990231990232, 0.0231990231990232, 0.02564102564102564, 0.0231990231990232, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02442002442002442, 0.02442002442002442, 0.0231990231990232, 0.02197802197802198, 0.02197802197802198, 0.0231990231990232, 0.02442002442002442, 0.02564102564102564, 0.02442002442002442, 0.02197802197802198, 0.0231990231990232, 0.0231990231990232, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.020757020757020756, 0.8974358974358975, 0.03663003663003663, 0.019536019536019536, 0.020757020757020756, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.019536019536019536, 0.019536019536019536, 0.019536019536019536, 0.018315018315018316, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.014652014652014652, 0.015873015873015872, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.019536019536019536, 0.019536019536019536, 0.019536019536019536, 0.019536019536019536, 0.019536019536019536, 0.020757020757020756, 0.020757020757020756, 0.020757020757020756, 0.020757020757020756, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.020757020757020756, 0.020757020757020756, 0.020757020757020756, 0.029304029304029304, 0.042735042735042736, 0.045177045177045176, 0.04395604395604396, 0.03296703296703297, 0.030525030525030524, 0.026862026862026864, 0.031746031746031744, 0.02442002442002442, 0.02442002442002442, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.026862026862026864, 0.026862026862026864, 0.029304029304029304, 0.045177045177045176, 0.08180708180708181, 0.525030525030525], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lip_A_acyltrans.gap.json b/pfam_gap_rates/Lip_A_acyltrans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7eeaeb30f01b94c2a77c646eff4124b58db0571e
--- /dev/null
+++ b/pfam_gap_rates/Lip_A_acyltrans.gap.json
@@ -0,0 +1 @@
+{"family": "Lip_A_acyltrans", "n_seqs": 1680, "length": 314, "gap_rates": [0.95, 0.9136904761904762, 0.9035714285714286, 0.8940476190476191, 0.8791666666666667, 0.8583333333333333, 0.8458333333333333, 0.8321428571428572, 0.8202380952380952, 0.8011904761904762, 0.7797619047619048, 0.7577380952380952, 0.7339285714285714, 0.7363095238095239, 0.7029761904761904, 0.6369047619047619, 0.5375, 0.48333333333333334, 0.44702380952380955, 0.3767857142857143, 0.33035714285714285, 0.2988095238095238, 0.2702380952380952, 0.256547619047619, 0.2488095238095238, 0.24166666666666667, 0.23511904761904762, 0.225, 0.2220238095238095, 0.22023809523809523, 0.21904761904761905, 0.2154761904761905, 0.2125, 0.21011904761904762, 0.20714285714285716, 0.20357142857142857, 0.2011904761904762, 0.1982142857142857, 0.19464285714285715, 0.19285714285714287, 0.1886904761904762, 0.1886904761904762, 0.1863095238095238, 0.18511904761904763, 0.18452380952380953, 0.21785714285714286, 0.1880952380952381, 0.18273809523809523, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Lip_prot_lig_C.gap.json b/pfam_gap_rates/Lip_prot_lig_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bd76bcd45904be8b21d027db14aa168218e4c03
--- /dev/null
+++ b/pfam_gap_rates/Lip_prot_lig_C.gap.json
@@ -0,0 +1 @@
+{"family": "Lip_prot_lig_C", "n_seqs": 559, "length": 89, "gap_rates": [0.29338103756708406, 0.19856887298747763, 0.13953488372093023, 0.11985688729874776, 0.11449016100178891, 0.1073345259391771, 0.08944543828264759, 0.07871198568872988, 0.0626118067978533, 0.059033989266547404, 0.04114490161001789, 0.03756708407871199, 0.03398926654740608, 0.8962432915921288, 0.03041144901610018, 0.025044722719141325, 0.023255813953488372, 0.007155635062611807, 0.007155635062611807, 0.005366726296958855, 0.005366726296958855, 0.0035778175313059034, 0.0035778175313059034, 0.0017889087656529517, 0.0017889087656529517, 0.0017889087656529517, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0017889087656529517, 0.0035778175313059034, 0.0035778175313059034, 0.007155635062611807, 0.007155635062611807, 0.9481216457960644, 0.005366726296958855, 0.0035778175313059034, 0.007155635062611807, 0.007155635062611807, 0.007155635062611807, 0.007155635062611807, 0.007155635062611807, 0.007155635062611807, 0.007155635062611807, 0.008944543828264758, 0.01073345259391771, 0.01073345259391771, 0.012522361359570662, 0.014311270125223614, 0.017889087656529516, 0.01967799642218247, 0.023255813953488372, 0.026833631484794274, 0.03935599284436494, 0.04293381037567084, 0.03935599284436494, 0.03756708407871199, 0.03756708407871199, 0.03756708407871199, 0.04293381037567084, 0.044722719141323794, 0.05366726296958855, 0.07871198568872988, 0.09123434704830054, 0.18246869409660108, 0.16815742397137745, 0.12880143112701253, 0.13416815742397137, 0.14311270125223613, 0.13416815742397137, 0.9481216457960644, 0.8962432915921288, 0.13416815742397137, 0.14669051878354203, 0.14669051878354203, 0.1520572450805009, 0.1520572450805009, 0.1520572450805009, 0.1592128801431127, 0.16279069767441862, 0.18783542039355994, 0.23255813953488372, 0.46332737030411447], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipase_GDSL_2.gap.json b/pfam_gap_rates/Lipase_GDSL_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b0d22723ffa0f7ae40e7ddc4acb329b6838848f5
--- /dev/null
+++ b/pfam_gap_rates/Lipase_GDSL_2.gap.json
@@ -0,0 +1 @@
+{"family": "Lipase_GDSL_2", "n_seqs": 5000, "length": 302, "gap_rates": [0.3868, 0.1564, 0.121, 0.114, 0.1134, 0.1136, 0.113, 0.1124, 0.9484, 0.1386, 0.2032, 0.282, 0.3518, 0.5122, 0.7392, 0.7998, 0.8574, 0.902, 0.9288, 0.9466, 0.9142, 0.88, 0.8206, 0.7714, 0.6552, 0.234, 0.1978, 0.1694, 0.1416, 0.1276, 0.1144, 0.1074, 0.098, 0.0934, 0.4752, 0.1008, 0.0902, 0.0828, 0.0748, 0.0712, 0.0692, 0.0682, 0.0688, 0.7562, 0.9184, 0.9372, 0.8416, 0.6336, 0.2392, 0.2294, 0.1348, 0.1082, 0.086, 0.0848, 0.5694, 0.8858, 0.9448, 0.9328, 0.7928, 0.031, 0.0274, 0.024, 0.0236, 0.0236, 0.0232, 0.0238, 0.023, 0.7172, 0.8124, 0.8786, 0.9184, 0.9412, 0.9318, 0.9006, 0.8508, 0.7872, 0.6392, 0.5222, 0.486, 0.0836, 0.0758, 0.0712, 0.0634, 0.0654, 0.0668, 0.072, 0.0494, 0.7772, 0.8716, 0.9328, 0.9456, 0.9084, 0.8408, 0.5278, 0.1244, 0.1114, 0.0832, 0.0606, 0.0612, 0.0654, 0.0112, 0.777, 0.8514, 0.9146, 0.9328, 0.9226, 0.8712, 0.8326, 0.68, 0.0174, 0.0148, 0.0066, 0.0058, 0.0054, 0.0054, 0.007, 0.008, 0.0062, 0.0058, 0.0046, 0.8324, 0.8632, 0.893, 0.9214, 0.9452, 0.9068, 0.8756, 0.8466, 0.812, 0.0104, 0.0752, 0.065, 0.0526, 0.0504, 0.0492, 0.0506, 0.0494, 0.0552, 0.0654, 0.063, 0.0744, 0.0936, 0.4814, 0.6528, 0.6988, 0.748, 0.7904, 0.8084, 0.834, 0.8622, 0.8736, 0.891, 0.8972, 0.9108, 0.9228, 0.9364, 0.9458, 0.9298, 0.918, 0.8996, 0.8946, 0.8834, 0.8678, 0.8504, 0.8222, 0.8016, 0.7766, 0.7288, 0.6682, 0.628, 0.5314, 0.01, 0.0096, 0.0076, 0.0082, 0.008, 0.008, 0.0122, 0.0112, 0.0108, 0.0128, 0.0148, 0.9314, 0.9024, 0.3768, 0.2994, 0.075, 0.0724, 0.0788, 0.077, 0.064, 0.7144, 0.7858, 0.811, 0.8458, 0.8886, 0.924, 0.9406, 0.9468, 0.9316, 0.9148, 0.8664, 0.8306, 0.7988, 0.766, 0.697, 0.2896, 0.2082, 0.1722, 0.1066, 0.063, 0.0396, 0.0274, 0.025, 0.0224, 0.0234, 0.034, 0.0388, 0.0564, 0.074, 0.1164, 0.1544, 0.217, 0.8068, 0.3562, 0.232, 0.1464, 0.1074, 0.0772, 0.058, 0.045, 0.0326, 0.0288, 0.027, 0.0266, 0.028, 0.0286, 0.0294, 0.03, 0.0312, 0.035, 0.0378, 0.937, 0.8198, 0.0738, 0.0512, 0.0418, 0.049, 0.0464, 0.041, 0.0412, 0.0406, 0.7456, 0.8082, 0.8806, 0.9344, 0.9494, 0.9448, 0.9138, 0.8662, 0.7866, 0.712, 0.1574, 0.1886, 0.1466, 0.1068, 0.0988, 0.0942, 0.0936, 0.1036, 0.9324, 0.1834, 0.186, 0.171, 0.2502, 0.2134, 0.191, 0.1922, 0.1836, 0.171, 0.175, 0.401, 0.8594, 0.8862, 0.9118, 0.937, 0.948, 0.9448, 0.9236, 0.902, 0.8676, 0.8318, 0.0876, 0.088, 0.092, 0.1022, 0.1118, 0.1244, 0.1466, 0.2346, 0.386, 0.679], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipocalin_5.gap.json b/pfam_gap_rates/Lipocalin_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc77f044095a5ceaa6e360adb316f459f451035b
--- /dev/null
+++ b/pfam_gap_rates/Lipocalin_5.gap.json
@@ -0,0 +1 @@
+{"family": "Lipocalin_5", "n_seqs": 148, "length": 165, "gap_rates": [0.38513513513513514, 0.1554054054054054, 0.12837837837837837, 0.12162162162162163, 0.12162162162162163, 0.12162162162162163, 0.12162162162162163, 0.12162162162162163, 0.9459459459459459, 0.16216216216216217, 0.13513513513513514, 0.13513513513513514, 0.12162162162162163, 0.10810810810810811, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10810810810810811, 0.5135135135135135, 0.918918918918919, 0.9459459459459459, 0.8581081081081081, 0.14864864864864866, 0.10810810810810811, 0.10810810810810811, 0.12162162162162163, 0.12162162162162163, 0.13513513513513514, 0.12162162162162163, 0.12837837837837837, 0.11486486486486487, 0.10135135135135136, 0.0945945945945946, 0.08783783783783784, 0.08783783783783784, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.10810810810810811, 0.08108108108108109, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.06756756756756757, 0.07432432432432433, 0.07432432432432433, 0.08783783783783784, 0.10135135135135136, 0.7972972972972973, 0.8581081081081081, 0.9324324324324325, 0.9391891891891891, 0.9324324324324325, 0.8445945945945946, 0.7432432432432432, 0.27702702702702703, 0.25, 0.22297297297297297, 0.19594594594594594, 0.20945945945945946, 0.22297297297297297, 0.21621621621621623, 0.14864864864864866, 0.14189189189189189, 0.14189189189189189, 0.12162162162162163, 0.11486486486486487, 0.11486486486486487, 0.10135135135135136, 0.10135135135135136, 0.08108108108108109, 0.08108108108108109, 0.06756756756756757, 0.0472972972972973, 0.033783783783783786, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.02027027027027027, 0.02027027027027027, 0.013513513513513514, 0.02027027027027027, 0.02027027027027027, 0.02702702702702703, 0.033783783783783786, 0.34459459459459457, 0.7297297297297297, 0.8175675675675675, 0.8783783783783784, 0.8851351351351351, 0.8513513513513513, 0.777027027027027, 0.722972972972973, 0.32432432432432434, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.04054054054054054, 0.05405405405405406, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.05405405405405406, 0.060810810810810814, 0.060810810810810814, 0.060810810810810814, 0.060810810810810814, 0.06756756756756757, 0.07432432432432433, 0.8986486486486487, 0.9459459459459459, 0.9391891891891891, 0.8851351351351351, 0.10810810810810811, 0.10135135135135136, 0.10810810810810811, 0.10135135135135136, 0.0945945945945946, 0.2972972972972973, 0.6418918918918919, 0.6418918918918919, 0.6486486486486487, 0.31756756756756754, 0.2972972972972973, 0.2702702702702703, 0.28378378378378377, 0.39864864864864863, 0.3581081081081081, 0.34459459459459457, 0.34459459459459457, 0.35135135135135137, 0.40540540540540543, 0.41216216216216217, 0.39864864864864863, 0.3783783783783784, 0.9256756756756757, 0.33783783783783783, 0.3310810810810811, 0.3310810810810811, 0.3310810810810811, 0.3310810810810811, 0.34459459459459457, 0.3581081081081081, 0.6418918918918919], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LolB.gap.json b/pfam_gap_rates/LolB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3702de7fa58779e062aa68918d8d6777a3871476
--- /dev/null
+++ b/pfam_gap_rates/LolB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Longin.gap.json b/pfam_gap_rates/Longin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d77af29f6e4caab4ab68874a1d0f68aae3d5f146
--- /dev/null
+++ b/pfam_gap_rates/Longin.gap.json
@@ -0,0 +1 @@
+{"family": "Longin", "n_seqs": 1267, "length": 96, "gap_rates": [0.5714285714285714, 0.27466456195737965, 0.16732438831886345, 0.12786108918705605, 0.11760063141278611, 0.10181531176006314, 0.09707971586424625, 0.13022888713496447, 0.1941594317284925, 0.3149171270718232, 0.30544593528018943, 0.11286503551696922, 0.8879242304656669, 0.7876874506708761, 0.30860299921073403, 0.04577742699289661, 0.043409629044988164, 0.04104183109707971, 0.04025256511444357, 0.04025256511444357, 0.03946329913180742, 0.9471191791633781, 0.03472770323599053, 0.03314917127071823, 0.037884767166535126, 0.028413575374901343, 0.0244672454617206, 0.022888713496448304, 0.021310181531176007, 0.01973164956590371, 0.01973164956590371, 0.021310181531176007, 0.9084451460142068, 0.9376479873717443, 0.9408050513022889, 0.9463299131807419, 0.9400157853196527, 0.9171270718232044, 0.898973954222573, 0.018942383583267563, 0.016574585635359115, 0.8271507498026835, 0.016574585635359115, 0.01578531965272297, 0.014206787687450671, 0.011838989739542225, 0.010260457774269928, 0.011049723756906077, 0.006314127861089187, 0.006314127861089187, 0.011049723756906077, 0.006314127861089187, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.007103393843725336, 0.006314127861089187, 0.006314127861089187, 0.004735595895816891, 0.004735595895816891, 0.004735595895816891, 0.004735595895816891, 0.004735595895816891, 0.004735595895816891, 0.0055248618784530384, 0.007103393843725336, 0.007103393843725336, 0.007892659826361484, 0.011049723756906077, 0.012628255722178374, 0.01499605367008682, 0.01578531965272297, 0.026835043409629045, 0.022888713496448304, 0.025256511444356748, 0.23125493291239146, 0.47908445146014206, 0.19652722967640096, 0.21152328334648776, 0.42857142857142855, 0.27387529597474347, 0.22730860299921074, 0.5564325177584846, 0.5501183898973955, 0.5438042620363063, 0.27624309392265195, 0.2880820836621942, 0.3022888713496448, 0.31333859510655093, 0.31728492501973166, 0.3314917127071823, 0.7182320441988951, 0.34175217048145223, 0.345698500394633, 0.3867403314917127, 0.8713496448303079], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LrgA.gap.json b/pfam_gap_rates/LrgA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c54494c71b64e2584a84a1c70e234fdcbddaf242
--- /dev/null
+++ b/pfam_gap_rates/LrgA.gap.json
@@ -0,0 +1 @@
+{"family": "LrgA", "n_seqs": 778, "length": 96, "gap_rates": [0.6786632390745502, 0.13496143958868895, 0.07197943444730077, 0.05912596401028278, 0.055269922879177376, 0.04627249357326478, 0.043701799485861184, 0.038560411311053984, 0.038560411311053984, 0.033419023136246784, 0.033419023136246784, 0.03470437017994859, 0.030848329048843187, 0.02442159383033419, 0.02056555269922879, 0.02056555269922879, 0.02056555269922879, 0.02056555269922879, 0.02056555269922879, 0.02056555269922879, 0.02056555269922879, 0.02056555269922879, 0.02056555269922879, 0.019280205655526992, 0.017994858611825194, 0.017994858611825194, 0.017994858611825194, 0.017994858611825194, 0.017994858611825194, 0.017994858611825194, 0.9498714652956298, 0.9421593830334191, 0.016709511568123392, 0.05012853470437018, 0.02699228791773779, 0.02570694087403599, 0.021850899742930592, 0.017994858611825194, 0.019280205655526992, 0.016709511568123392, 0.015424164524421594, 0.015424164524421594, 0.014138817480719794, 0.014138817480719794, 0.008997429305912597, 0.008997429305912597, 0.008997429305912597, 0.010282776349614395, 0.011568123393316195, 0.012853470437017995, 0.012853470437017995, 0.006426735218508998, 0.006426735218508998, 0.006426735218508998, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.005141388174807198, 0.006426735218508998, 0.006426735218508998, 0.006426735218508998, 0.007712082262210797, 0.006426735218508998, 0.007712082262210797, 0.010282776349614395, 0.010282776349614395, 0.008997429305912597, 0.008997429305912597, 0.008997429305912597, 0.008997429305912597, 0.008997429305912597, 0.008997429305912597, 0.008997429305912597, 0.010282776349614395, 0.008997429305912597, 0.008997429305912597, 0.008997429305912597, 0.010282776349614395, 0.010282776349614395, 0.011568123393316195, 0.012853470437017995, 0.012853470437017995, 0.012853470437017995, 0.015424164524421594, 0.019280205655526992, 0.03984575835475578, 0.13753213367609254, 0.7802056555269923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LssY_C.gap.json b/pfam_gap_rates/LssY_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0198f013af74157ed1ed4202bbd3ef38947acd21
--- /dev/null
+++ b/pfam_gap_rates/LssY_C.gap.json
@@ -0,0 +1 @@
+{"family": "LssY_C", "n_seqs": 158, "length": 200, "gap_rates": [0.9113924050632911, 0.7531645569620253, 0.41139240506329117, 0.3291139240506329, 0.2721518987341772, 0.25316455696202533, 0.2468354430379747, 0.7341772151898734, 0.7341772151898734, 0.7341772151898734, 0.7088607594936709, 0.20253164556962025, 0.17088607594936708, 0.14556962025316456, 0.12658227848101267, 0.10126582278481013, 0.08860759493670886, 0.06962025316455696, 0.06962025316455696, 0.056962025316455694, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.04430379746835443, 0.04430379746835443, 0.9113924050632911, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.08860759493670886, 0.08227848101265822, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.04430379746835443, 0.08227848101265822, 0.08860759493670886, 0.056962025316455694, 0.04430379746835443, 0.12658227848101267, 0.12658227848101267, 0.06962025316455696, 0.05063291139240506, 0.056962025316455694, 0.05063291139240506, 0.27848101265822783, 0.25316455696202533, 0.2468354430379747, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.08860759493670886, 0.43670886075949367, 0.8481012658227848, 0.12025316455696203, 0.0379746835443038, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.0379746835443038, 0.06329113924050633, 0.2848101265822785, 0.2848101265822785, 0.310126582278481, 0.9493670886075949, 0.4050632911392405, 0.35443037974683544, 0.21518987341772153, 0.189873417721519, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.0379746835443038, 0.12025316455696203, 0.13924050632911392, 0.17721518987341772, 0.189873417721519, 0.24050632911392406, 0.23417721518987342, 0.23417721518987342, 0.24050632911392406, 0.3670886075949367, 0.3860759493670886, 0.3924050632911392, 0.3670886075949367, 0.35443037974683544, 0.3037974683544304, 0.3037974683544304, 0.9177215189873418, 0.310126582278481, 0.9430379746835443, 0.2848101265822785, 0.27848101265822783, 0.27848101265822783, 0.2721518987341772, 0.27848101265822783, 0.2721518987341772, 0.2721518987341772, 0.2721518987341772, 0.2721518987341772, 0.2721518987341772, 0.2721518987341772, 0.2721518987341772, 0.2721518987341772, 0.2721518987341772, 0.2721518987341772, 0.2848101265822785, 0.2848101265822785, 0.27848101265822783, 0.2911392405063291, 0.2974683544303797, 0.3037974683544304, 0.3037974683544304, 0.2974683544303797, 0.310126582278481, 0.31645569620253167, 0.310126582278481, 0.31645569620253167, 0.3227848101265823, 0.3227848101265823, 0.3227848101265823, 0.3227848101265823, 0.47468354430379744, 0.379746835443038, 0.379746835443038, 0.3670886075949367, 0.36075949367088606, 0.36075949367088606, 0.36075949367088606, 0.37341772151898733, 0.8670886075949367, 0.8734177215189873, 0.8670886075949367, 0.3860759493670886, 0.379746835443038, 0.37341772151898733, 0.36075949367088606, 0.36075949367088606, 0.36075949367088606, 0.36075949367088606, 0.35443037974683544, 0.35443037974683544, 0.36075949367088606, 0.36075949367088606, 0.36075949367088606, 0.4936708860759494, 0.7088607594936709], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lung_7-TM_R.gap.json b/pfam_gap_rates/Lung_7-TM_R.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7249b3f8c45bc5a08918f60cce813ec2c71ca0f8
--- /dev/null
+++ b/pfam_gap_rates/Lung_7-TM_R.gap.json
@@ -0,0 +1 @@
+{"family": "Lung_7-TM_R", "n_seqs": 762, "length": 309, "gap_rates": [0.7073490813648294, 0.5603674540682415, 0.4881889763779528, 0.4409448818897638, 0.4199475065616798, 0.37139107611548555, 0.2769028871391076, 0.2742782152230971, 0.27165354330708663, 0.2677165354330709, 0.2690288713910761, 0.2677165354330709, 0.30183727034120733, 0.31496062992125984, 0.37926509186351703, 0.45144356955380577, 0.46062992125984253, 0.5065616797900262, 0.8871391076115486, 0.9238845144356955, 0.8622047244094488, 0.6916010498687664, 0.6377952755905512, 0.5813648293963255, 0.5183727034120735, 0.2650918635170604, 0.2204724409448819, 0.21653543307086615, 0.2125984251968504, 0.2047244094488189, 0.1994750656167979, 0.1994750656167979, 0.1942257217847769, 0.20341207349081364, 0.19160104986876642, 0.19160104986876642, 0.19160104986876642, 0.18766404199475065, 0.18503937007874016, 0.9435695538057742, 0.1837270341207349, 0.1784776902887139, 0.17716535433070865, 0.16929133858267717, 0.1679790026246719, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LuxC.gap.json b/pfam_gap_rates/LuxC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb52a258276a9878d0cc6ee4d13b796d81d2bd24
--- /dev/null
+++ b/pfam_gap_rates/LuxC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MAS20.gap.json b/pfam_gap_rates/MAS20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b76d10d4b6f228943bc77e927dd01121486102c4
--- /dev/null
+++ b/pfam_gap_rates/MAS20.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MASE1.gap.json b/pfam_gap_rates/MASE1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ab6e00ec52a8e9a033c10a2531b0ac792ee9e72
--- /dev/null
+++ b/pfam_gap_rates/MASE1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MBT.gap.json b/pfam_gap_rates/MBT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a92a609b768cd2a9d5b135f00c464347cb1eef4d
--- /dev/null
+++ b/pfam_gap_rates/MBT.gap.json
@@ -0,0 +1 @@
+{"family": "MBT", "n_seqs": 1122, "length": 77, "gap_rates": [0.32976827094474154, 0.14795008912655971, 0.08288770053475936, 0.0784313725490196, 0.0766488413547237, 0.0766488413547237, 0.0748663101604278, 0.07308377896613191, 0.06951871657754011, 0.06862745098039216, 0.9411764705882353, 0.9447415329768271, 0.9233511586452763, 0.07397504456327986, 0.0748663101604278, 0.044563279857397504, 0.0285204991087344, 0.027629233511586453, 0.027629233511586453, 0.025846702317290554, 0.024955436720142603, 0.02406417112299465, 0.0213903743315508, 0.01871657754010695, 0.01871657754010695, 0.01871657754010695, 0.8146167557932263, 0.0142602495543672, 0.0142602495543672, 0.013368983957219251, 0.013368983957219251, 0.0142602495543672, 0.015151515151515152, 0.015151515151515152, 0.016042780748663103, 0.01693404634581105, 0.036541889483065956, 0.058823529411764705, 0.0570409982174688, 0.030303030303030304, 0.7076648841354723, 0.9064171122994652, 0.839572192513369, 0.5998217468805704, 0.024955436720142603, 0.02406417112299465, 0.0213903743315508, 0.01871657754010695, 0.017825311942959002, 0.017825311942959002, 0.020499108734402853, 0.01871657754010695, 0.01871657754010695, 0.0213903743315508, 0.022281639928698752, 0.022281639928698752, 0.022281639928698752, 0.026737967914438502, 0.0285204991087344, 0.031194295900178252, 0.06417112299465241, 0.07130124777183601, 0.07575757575757576, 0.0766488413547237, 0.07932263814616755, 0.08110516934046345, 0.08199643493761141, 0.08645276292335116, 0.08912655971479501, 0.09358288770053476, 0.09803921568627451, 0.12388591800356506, 0.13279857397504458, 0.20231729055258468, 0.3672014260249554, 0.5035650623885918, 0.9367201426024956], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MCM2_N.gap.json b/pfam_gap_rates/MCM2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3a0b3d9a479e1c0c6d0e9f02a4d8fcad7482d5b
--- /dev/null
+++ b/pfam_gap_rates/MCM2_N.gap.json
@@ -0,0 +1 @@
+{"family": "MCM2_N", "n_seqs": 301, "length": 192, "gap_rates": [0.7209302325581395, 0.6179401993355482, 0.584717607973422, 0.5382059800664452, 0.5116279069767442, 0.48172757475083056, 0.46511627906976744, 0.44518272425249167, 0.7342192691029901, 0.42857142857142855, 0.3787375415282392, 0.34219269102990035, 0.32558139534883723, 0.2956810631229236, 0.23255813953488372, 0.53156146179402, 0.47840531561461797, 0.9435215946843853, 0.7408637873754153, 0.21262458471760798, 0.18272425249169436, 0.10963455149501661, 0.08637873754152824, 0.08637873754152824, 0.08637873754152824, 0.08637873754152824, 0.08637873754152824, 0.08637873754152824, 0.08637873754152824, 0.08637873754152824, 0.08637873754152824, 0.21926910299003322, 0.08305647840531562, 0.08305647840531562, 0.06976744186046512, 0.0664451827242525, 0.06976744186046512, 0.06312292358803986, 0.06312292358803986, 0.06312292358803986, 0.0664451827242525, 0.0664451827242525, 0.15946843853820597, 0.05647840531561462, 0.04318936877076412, 0.04318936877076412, 0.03986710963455149, 0.036544850498338874, 0.036544850498338874, 0.946843853820598, 0.12624584717607973, 0.8604651162790697, 0.9335548172757475, 0.8471760797342193, 0.04983388704318937, 0.03986710963455149, 0.8538205980066446, 0.036544850498338874, 0.06312292358803986, 0.03986710963455149, 0.04318936877076412, 0.23588039867109634, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.029900332225913623, 0.05647840531561462, 0.12624584717607973, 0.029900332225913623, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.006644518272425249, 0.006644518272425249, 0.009966777408637873, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.006644518272425249, 0.016611295681063124, 0.8571428571428571, 0.8803986710963455, 0.8970099667774086, 0.8704318936877077, 0.8338870431893688, 0.6312292358803987, 0.5913621262458472, 0.5481727574750831, 0.26578073089701, 0.19933554817275748, 0.11960132890365449, 0.10631229235880399, 0.11627906976744186, 0.9435215946843853, 0.12292358803986711, 0.09634551495016612, 0.03322259136212625, 0.029900332225913623, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.029900332225913623, 0.8770764119601329, 0.06976744186046512, 0.1461794019933555, 0.34219269102990035, 0.9169435215946844, 0.8637873754152824, 0.574750830564784, 0.760797342192691, 0.6578073089700996, 0.5182724252491694, 0.46179401993355484, 0.42524916943521596, 0.32558139534883723, 0.27906976744186046, 0.19933554817275748, 0.12956810631229235, 0.10963455149501661, 0.07973421926910298, 0.07973421926910298, 0.07641196013289037, 0.07308970099667775, 0.07973421926910298, 0.07641196013289037, 0.07973421926910298, 0.19269102990033224, 0.9269102990033222, 0.946843853820598, 0.9036544850498339, 0.39867109634551495, 0.3222591362126246, 0.2757475083056478, 0.8637873754152824, 0.9003322259136213, 0.9401993355481728, 0.8870431893687708, 0.7940199335548173, 0.24916943521594684, 0.1362126245847176, 0.14285714285714285, 0.15282392026578073, 0.13953488372093023, 0.13953488372093023, 0.2026578073089701, 0.5415282392026578, 0.9036544850498339, 0.9169435215946844, 0.9169435215946844, 0.920265780730897, 0.920265780730897, 0.920265780730897, 0.9368770764119602, 0.9269102990033222, 0.920265780730897, 0.920265780730897, 0.920265780730897, 0.9169435215946844, 0.9036544850498339, 0.9003322259136213, 0.5249169435215947, 0.9235880398671097, 0.8903654485049833, 0.4850498338870432, 0.24584717607973422, 0.22259136212624583, 0.2059800664451827, 0.21926910299003322, 0.25249169435215946, 0.2757475083056478, 0.2558139534883721, 0.23920265780730898, 0.23920265780730898, 0.23920265780730898, 0.2591362126245847, 0.2691029900332226, 0.2724252491694352, 0.3122923588039867, 0.39867109634551495, 0.3920265780730897, 0.40863787375415284, 0.4418604651162791, 0.4850498338870432, 0.7541528239202658], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MCM_OB.gap.json b/pfam_gap_rates/MCM_OB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d34963b9642f9d45fbee0acddd63f1476ffdd675
--- /dev/null
+++ b/pfam_gap_rates/MCM_OB.gap.json
@@ -0,0 +1 @@
+{"family": "MCM_OB", "n_seqs": 2468, "length": 165, "gap_rates": [0.8970826580226904, 0.2807941653160454, 0.1385737439222042, 0.10494327390599675, 0.08833063209076175, 0.07941653160453808, 0.06239870340356564, 0.05713128038897893, 0.05348460291734198, 0.0526742301458671, 0.04781199351701783, 0.04659643435980551, 0.04538087520259319, 0.044975688816855756, 0.04376012965964344, 0.04376012965964344, 0.043354943273905995, 0.043354943273905995, 0.04254457050243112, 0.04254457050243112, 0.04173419773095624, 0.04173419773095624, 0.04173419773095624, 0.041329011345218804, 0.041329011345218804, 0.04092382495948136, 0.041329011345218804, 0.04173419773095624, 0.04092382495948136, 0.040113452188006486, 0.03768233387358185, 0.03727714748784441, 0.03646677471636953, 0.03484602917341977, 0.034440842787682335, 0.03403565640194489, 0.03403565640194489, 0.03525121555915721, 0.03606158833063209, 0.032820097244732574, 0.03403565640194489, 0.03565640194489465, 0.04457050243111831, 0.03727714748784441, 0.03889789303079417, 0.6726094003241491, 0.06442463533225283, 0.5247163695299838, 0.6061588330632091, 0.7779578606158833, 0.5688816855753647, 0.4991896272285251, 0.1094003241491086, 0.19084278768233387, 0.16531604538087522, 0.08427876823338736, 0.5024311183144247, 0.5259319286871961, 0.6564019448946515, 0.8812803889789304, 0.9145056726094003, 0.9303079416531604, 0.9319286871961102, 0.9209886547811994, 0.9011345218800648, 0.7013776337115073, 0.6195299837925445, 0.5190437601296597, 0.49878444084278767, 0.06280388978930308, 0.04092382495948136, 0.916936790923825, 0.9201782820097245, 0.9448946515397083, 0.9217990275526742, 0.9193679092382496, 0.8184764991896273, 0.06239870340356564, 0.06239870340356564, 0.343192868719611, 0.8257698541329012, 0.8521069692058347, 0.8788492706645057, 0.9380064829821718, 0.9120745542949756, 0.8553484602917342, 0.8354943273905997, 0.8042949756888168, 0.32982171799027554, 0.08508914100486224, 0.07293354943273905, 0.07576985413290113, 0.04294975688816856, 0.9108589951377634, 0.913290113452188, 0.8885737439222042, 0.2986223662884927, 0.04862236628849271, 0.03525121555915721, 0.9444894651539708, 0.9262560777957861, 0.03403565640194489, 0.030388978930307942, 0.029983792544570502, 0.028768233387358184, 0.028768233387358184, 0.027552674230145867, 0.028768233387358184, 0.9165316045380876, 0.9035656401944895, 0.02957860615883306, 0.028768233387358184, 0.02674230145867099, 0.025526742301458672, 0.025526742301458672, 0.025121555915721232, 0.025121555915721232, 0.02471636952998379, 0.023095623987034037, 0.02106969205834684, 0.02106969205834684, 0.02106969205834684, 0.023095623987034037, 0.023500810372771474, 0.02471636952998379, 0.023095623987034037, 0.027957860615883307, 0.03687196110210697, 0.04173419773095624, 0.038492706645056725, 0.03403565640194489, 0.028768233387358184, 0.028768233387358184, 0.029173419773095625, 0.027147487844408427, 0.02674230145867099, 0.027147487844408427, 0.027147487844408427, 0.028363047001620744, 0.028768233387358184, 0.029173419773095625, 0.029983792544570502, 0.029983792544570502, 0.029173419773095625, 0.029173419773095625, 0.030388978930307942, 0.03119935170178282, 0.03119935170178282, 0.032820097244732574, 0.031604538087520256, 0.032820097244732574, 0.03322528363047002, 0.033630470016207455, 0.034440842787682335, 0.03565640194489465, 0.03768233387358185, 0.03646677471636953, 0.03768233387358185, 0.03808752025931929, 0.038492706645056725, 0.039303079416531606, 0.04578606158833063, 0.07982171799027553, 0.21150729335494328, 0.5623987034035657], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MFAP1.gap.json b/pfam_gap_rates/MFAP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2331824d3555c10ea0a642ae53a90ec0ceba0a9
--- /dev/null
+++ b/pfam_gap_rates/MFAP1.gap.json
@@ -0,0 +1 @@
+{"family": "MFAP1", "n_seqs": 325, "length": 246, "gap_rates": [0.6276923076923077, 0.3261538461538461, 0.24, 0.20307692307692307, 0.2123076923076923, 0.25846153846153846, 0.3476923076923077, 0.30153846153846153, 0.18769230769230769, 0.16, 0.15692307692307692, 0.1476923076923077, 0.1476923076923077, 0.1476923076923077, 0.14153846153846153, 0.14153846153846153, 0.14153846153846153, 0.14153846153846153, 0.14153846153846153, 0.14153846153846153, 0.14153846153846153, 0.13846153846153847, 0.13846153846153847, 0.13846153846153847, 0.14153846153846153, 0.13846153846153847, 0.13538461538461538, 0.9323076923076923, 0.3261538461538461, 0.3076923076923077, 0.27076923076923076, 0.23076923076923078, 0.2123076923076923, 0.18461538461538463, 0.1476923076923077, 0.13538461538461538, 0.13230769230769232, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.12615384615384614, 0.12615384615384614, 0.12, 0.12307692307692308, 0.12, 0.12, 0.12, 0.11692307692307692, 0.11384615384615385, 0.11076923076923077, 0.11076923076923077, 0.1076923076923077, 0.12, 0.11692307692307692, 0.11384615384615385, 0.11384615384615385, 0.11384615384615385, 0.1076923076923077, 0.10153846153846154, 0.10153846153846154, 0.09846153846153846, 0.09538461538461539, 0.09538461538461539, 0.09538461538461539, 0.09230769230769231, 0.09846153846153846, 0.10153846153846154, 0.1076923076923077, 0.11076923076923077, 0.12615384615384614, 0.8215384615384616, 0.8369230769230769, 0.916923076923077, 0.8307692307692308, 0.8215384615384616, 0.15076923076923077, 0.22153846153846155, 0.23384615384615384, 0.4369230769230769, 0.4369230769230769, 0.4307692307692308, 0.27076923076923076, 0.8123076923076923, 0.8615384615384616, 0.8923076923076924, 0.9353846153846154, 0.92, 0.8676923076923077, 0.8369230769230769, 0.7753846153846153, 0.09846153846153846, 0.09538461538461539, 0.09230769230769231, 0.09538461538461539, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.09230769230769231, 0.3230769230769231, 0.10461538461538461, 0.1076923076923077, 0.09538461538461539, 0.09538461538461539, 0.09538461538461539, 0.09846153846153846, 0.10153846153846154, 0.10153846153846154, 0.10153846153846154, 0.10153846153846154, 0.10153846153846154, 0.10153846153846154, 0.09846153846153846, 0.09538461538461539, 0.09538461538461539, 0.09538461538461539, 0.09846153846153846, 0.09846153846153846, 0.09538461538461539, 0.10461538461538461, 0.11076923076923077, 0.11384615384615385, 0.11692307692307692, 0.12, 0.13230769230769232, 0.13538461538461538, 0.12923076923076923, 0.12615384615384614, 0.13230769230769232, 0.13230769230769232, 0.12923076923076923, 0.12307692307692308, 0.12923076923076923, 0.12923076923076923, 0.13230769230769232, 0.12923076923076923, 0.13230769230769232, 0.13538461538461538, 0.13846153846153847, 0.13538461538461538, 0.13538461538461538, 0.13846153846153847, 0.13230769230769232, 0.12923076923076923, 0.12923076923076923, 0.12615384615384614, 0.12615384615384614, 0.12615384615384614, 0.12307692307692308, 0.12615384615384614, 0.14153846153846153, 0.14153846153846153, 0.14461538461538462, 0.1476923076923077, 0.14461538461538462, 0.14153846153846153, 0.13230769230769232, 0.9230769230769231, 0.76, 0.28615384615384615, 0.23692307692307693, 0.13230769230769232, 0.12, 0.1076923076923077, 0.1076923076923077, 0.10461538461538461, 0.10461538461538461, 0.1076923076923077, 0.11076923076923077, 0.11384615384615385, 0.11076923076923077, 0.11692307692307692, 0.12, 0.12, 0.11384615384615385, 0.10461538461538461, 0.1076923076923077, 0.1076923076923077, 0.1076923076923077, 0.1076923076923077, 0.1076923076923077, 0.8584615384615385, 0.8676923076923077, 0.8615384615384616, 0.8492307692307692, 0.1076923076923077, 0.7907692307692308, 0.8646153846153846, 0.8153846153846154, 0.6, 0.5353846153846153, 0.2553846153846154, 0.18769230769230769, 0.10461538461538461, 0.10461538461538461, 0.10461538461538461, 0.10461538461538461, 0.10153846153846154, 0.10153846153846154, 0.9446153846153846, 0.10461538461538461, 0.10461538461538461, 0.10461538461538461, 0.10153846153846154, 0.10461538461538461, 0.10461538461538461, 0.17846153846153845, 0.11384615384615385, 0.11076923076923077, 0.11384615384615385, 0.12307692307692308, 0.8430769230769231, 0.11384615384615385, 0.11384615384615385, 0.11692307692307692, 0.11692307692307692, 0.11692307692307692, 0.12, 0.12, 0.12, 0.11384615384615385, 0.11692307692307692, 0.12923076923076923, 0.13538461538461538, 0.13846153846153847, 0.7353846153846154, 0.8246153846153846, 0.7292307692307692, 0.14153846153846153, 0.14153846153846153, 0.14153846153846153, 0.14153846153846153, 0.14153846153846153, 0.14461538461538462, 0.14461538461538462, 0.14461538461538462, 0.15076923076923077, 0.15076923076923077, 0.15076923076923077, 0.15076923076923077, 0.15076923076923077, 0.15076923076923077, 0.15384615384615385, 0.15692307692307692, 0.15692307692307692], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MHC_I.gap.json b/pfam_gap_rates/MHC_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e98e62eb77f947cc2adefdda43815c82f731c78a
--- /dev/null
+++ b/pfam_gap_rates/MHC_I.gap.json
@@ -0,0 +1 @@
+{"family": "MHC_I", "n_seqs": 463, "length": 182, "gap_rates": [0.6285097192224622, 0.36069114470842334, 0.31317494600431967, 0.3045356371490281, 0.2980561555075594, 0.2937365010799136, 0.2915766738660907, 0.2894168466522678, 0.28725701943844495, 0.27645788336933047, 0.27645788336933047, 0.2591792656587473, 0.2591792656587473, 0.2526997840172786, 0.2570194384449244, 0.26997840172786175, 0.24406047516198703, 0.2267818574514039, 0.2224622030237581, 0.2159827213822894, 0.21166306695464362, 0.20950323974082075, 0.20734341252699784, 0.20086393088552915, 0.19438444924406048, 0.19222462203023757, 0.1900647948164147, 0.1879049676025918, 0.1857451403887689, 0.1857451403887689, 0.1857451403887689, 0.1879049676025918, 0.1857451403887689, 0.1857451403887689, 0.1857451403887689, 0.18142548596112312, 0.18142548596112312, 0.18142548596112312, 0.183585313174946, 0.183585313174946, 0.183585313174946, 0.6155507559395248, 0.6198704103671706, 0.19870410367170627, 0.1879049676025918, 0.19222462203023757, 0.1879049676025918, 0.1857451403887689, 0.16846652267818574, 0.17062634989200864, 0.17494600431965443, 0.17278617710583152, 0.17062634989200864, 0.1857451403887689, 0.183585313174946, 0.17494600431965443, 0.9481641468682506, 0.7278617710583153, 0.17062634989200864, 0.16846652267818574, 0.16846652267818574, 0.16630669546436286, 0.16630669546436286, 0.16630669546436286, 0.16846652267818574, 0.16630669546436286, 0.16630669546436286, 0.16630669546436286, 0.16630669546436286, 0.16630669546436286, 0.16846652267818574, 0.16630669546436286, 0.17062634989200864, 0.17278617710583152, 0.17278617710583152, 0.17062634989200864, 0.17278617710583152, 0.17062634989200864, 0.16630669546436286, 0.16414686825053995, 0.16414686825053995, 0.16846652267818574, 0.17278617710583152, 0.17278617710583152, 0.17062634989200864, 0.17494600431965443, 0.1900647948164147, 0.17494600431965443, 0.1857451403887689, 0.17062634989200864, 0.4449244060475162, 0.17926565874730022, 0.15334773218142547, 0.15982721382289417, 0.15550755939524838, 0.15550755939524838, 0.15982721382289417, 0.15550755939524838, 0.15766738660907129, 0.1447084233261339, 0.1447084233261339, 0.1447084233261339, 0.1447084233261339, 0.1447084233261339, 0.13390928725701945, 0.12958963282937366, 0.12742980561555076, 0.12742980561555076, 0.11879049676025918, 0.5442764578833693, 0.12958963282937366, 0.11879049676025918, 0.11231101511879049, 0.1101511879049676, 0.1101511879049676, 0.1101511879049676, 0.1079913606911447, 0.10583153347732181, 0.1079913606911447, 0.1079913606911447, 0.1079913606911447, 0.1079913606911447, 0.1079913606911447, 0.1101511879049676, 0.1101511879049676, 0.11231101511879049, 0.11447084233261338, 0.11447084233261338, 0.11447084233261338, 0.11447084233261338, 0.11447084233261338, 0.11447084233261338, 0.11447084233261338, 0.11447084233261338, 0.11447084233261338, 0.11447084233261338, 0.11231101511879049, 0.1101511879049676, 0.11231101511879049, 0.1079913606911447, 0.1079913606911447, 0.1079913606911447, 0.10583153347732181, 0.10583153347732181, 0.10367170626349892, 0.10583153347732181, 0.1101511879049676, 0.1101511879049676, 0.11231101511879049, 0.1101511879049676, 0.11879049676025918, 0.12742980561555076, 0.11663066954643629, 0.12311015118790497, 0.12526997840172785, 0.12958963282937366, 0.13390928725701945, 0.6911447084233261, 0.13390928725701945, 0.13174946004319654, 0.13174946004319654, 0.13390928725701945, 0.12526997840172785, 0.12526997840172785, 0.12526997840172785, 0.12526997840172785, 0.12526997840172785, 0.12526997840172785, 0.12526997840172785, 0.12526997840172785, 0.12526997840172785, 0.12742980561555076, 0.12742980561555076, 0.13174946004319654, 0.13390928725701945, 0.1511879049676026, 0.17278617710583152, 0.23974082073434125, 0.2570194384449244, 0.28725701943844495, 0.3542116630669546, 0.4103671706263499], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MIOX.gap.json b/pfam_gap_rates/MIOX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c611a862c91409e1be07a1055866e65bc4dec726
--- /dev/null
+++ b/pfam_gap_rates/MIOX.gap.json
@@ -0,0 +1 @@
+{"family": "MIOX", "n_seqs": 347, "length": 258, "gap_rates": [0.6801152737752162, 0.3025936599423631, 0.23054755043227665, 0.1988472622478386, 0.19596541786743515, 0.19596541786743515, 0.19596541786743515, 0.19596541786743515, 0.1873198847262248, 0.1873198847262248, 0.17579250720461095, 0.1642651296829971, 0.1642651296829971, 0.1642651296829971, 0.1585014409221902, 0.1585014409221902, 0.1585014409221902, 0.15561959654178675, 0.15561959654178675, 0.15273775216138327, 0.15273775216138327, 0.15273775216138327, 0.13544668587896252, 0.13544668587896252, 0.13256484149855907, 0.12968299711815562, 0.12968299711815562, 0.12968299711815562, 0.9135446685878963, 0.9077809798270894, 0.12968299711815562, 0.12968299711815562, 0.13256484149855907, 0.13544668587896252, 0.13256484149855907, 0.13256484149855907, 0.11815561959654179, 0.11527377521613832, 0.11527377521613832, 0.11239193083573487, 0.10951008645533142, 0.10662824207492795, 0.10951008645533142, 0.10951008645533142, 0.10951008645533142, 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\ No newline at end of file
diff --git a/pfam_gap_rates/MIS13.gap.json b/pfam_gap_rates/MIS13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ba4435bb7ba1a1d2fdbf045623df03d0ea130c6
--- /dev/null
+++ b/pfam_gap_rates/MIS13.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MIase.gap.json b/pfam_gap_rates/MIase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..821e8c7c7a841e9bee2f711a665feaed4655f9c9
--- /dev/null
+++ b/pfam_gap_rates/MIase.gap.json
@@ -0,0 +1 @@
+{"family": "MIase", "n_seqs": 169, "length": 95, "gap_rates": [0.3431952662721893, 0.24260355029585798, 0.21301775147928995, 0.21301775147928995, 0.20118343195266272, 0.1952662721893491, 0.1893491124260355, 0.1893491124260355, 0.17159763313609466, 0.15384615384615385, 0.17751479289940827, 0.15976331360946747, 0.11242603550295859, 0.10059171597633136, 0.10059171597633136, 0.10650887573964497, 0.08875739644970414, 0.07100591715976332, 0.07100591715976332, 0.05325443786982249, 0.05917159763313609, 0.05325443786982249, 0.05325443786982249, 0.05325443786982249, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.03550295857988166, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.023668639053254437, 0.023668639053254437, 0.029585798816568046, 0.023668639053254437, 0.023668639053254437, 0.029585798816568046, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.029585798816568046, 0.01775147928994083, 0.9349112426035503, 0.9349112426035503, 0.9289940828402367, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.023668639053254437, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.8994082840236687, 0.8875739644970414, 0.023668639053254437, 0.03550295857988166, 0.04142011834319527, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.05917159763313609, 0.05917159763313609, 0.05917159763313609, 0.08284023668639054, 0.10059171597633136, 0.14201183431952663, 0.24260355029585798, 0.3431952662721893, 0.621301775147929], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MMS19_C.gap.json b/pfam_gap_rates/MMS19_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..006d0e5a455fb0f2d03358659a5fcb68623a6da2
--- /dev/null
+++ b/pfam_gap_rates/MMS19_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MNNL.gap.json b/pfam_gap_rates/MNNL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e3c2517686b567224154db45a4202af04898f46
--- /dev/null
+++ b/pfam_gap_rates/MNNL.gap.json
@@ -0,0 +1 @@
+{"family": "MNNL", "n_seqs": 138, "length": 90, "gap_rates": [0.35507246376811596, 0.13768115942028986, 0.10144927536231885, 0.07971014492753623, 0.057971014492753624, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.043478260869565216, 0.043478260869565216, 0.057971014492753624, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.057971014492753624, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.8478260869565217, 0.9057971014492754, 0.9492753623188406, 0.927536231884058, 0.8913043478260869, 0.8333333333333334, 0.15942028985507245, 0.2246376811594203, 0.2246376811594203, 0.2826086956521739, 0.391304347826087, 0.35507246376811596, 0.3115942028985507, 0.21014492753623187, 0.11594202898550725, 0.8913043478260869, 0.9202898550724637, 0.9347826086956522, 0.9420289855072463, 0.9347826086956522, 0.8985507246376812, 0.8695652173913043, 0.11594202898550725, 0.9347826086956522, 0.6884057971014492, 0.2608695652173913, 0.13043478260869565, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.036231884057971016, 0.057971014492753624, 0.07246376811594203, 0.10869565217391304, 0.15942028985507245, 0.06521739130434782, 0.050724637681159424, 0.050724637681159424, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.06521739130434782, 0.09420289855072464, 0.12318840579710146, 0.13043478260869565, 0.13043478260869565, 0.13768115942028986, 0.15942028985507245, 0.15942028985507245, 0.21014492753623187, 0.3188405797101449], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MOSC_N.gap.json b/pfam_gap_rates/MOSC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dde2938529ebd55d829cbd83d074de5660b9941b
--- /dev/null
+++ b/pfam_gap_rates/MOSC_N.gap.json
@@ -0,0 +1 @@
+{"family": "MOSC_N", "n_seqs": 1186, "length": 165, "gap_rates": [0.9258010118043845, 0.5885328836424958, 0.1745362563237774, 0.0893760539629005, 0.08263069139966273, 0.0733558178752108, 0.07251264755480608, 0.07166947723440135, 0.06745362563237774, 0.06661045531197302, 0.06492411467116357, 0.06323777403035413, 0.06323777403035413, 0.06070826306913996, 0.0581787521079258, 0.05733558178752108, 0.05649241146711636, 0.05564924114671164, 0.05649241146711636, 0.05649241146711636, 0.05143338954468803, 0.048903878583473864, 0.048060708263069137, 0.047217537942664416, 0.9350758853288365, 0.9401349072512648, 0.9114671163575042, 0.06239460370994941, 0.049747048903878585, 0.05480607082630692, 0.045531197301854974, 0.03794266441821248, 0.04131534569983136, 0.2318718381112985, 0.8861720067453626, 0.887858347386172, 0.851602023608769, 0.5784148397976391, 0.031197301854974706, 0.031197301854974706, 0.02951096121416526, 0.02782462057335582, 0.026981450252951095, 0.024451939291736932, 0.022765598650927487, 0.026138279932546374, 0.03035413153456998, 0.654300168634064, 0.03794266441821248, 0.0387858347386172, 0.04384485666104553, 0.7765598650927488, 0.8086003372681282, 0.8381112984822934, 0.8549747048903878, 0.8659359190556493, 0.8954468802698144, 0.9266441821247892, 0.8760539629005059, 0.8608768971332209, 0.8507588532883642, 0.8271500843170321, 0.8001686340640809, 0.7740303541315345, 0.03794266441821248, 0.03541315345699832, 0.03541315345699832, 0.03794266441821248, 0.04047217537942664, 0.04300168634064081, 0.046374367622259695, 0.049747048903878585, 0.05143338954468803, 0.05396290050590219, 0.05902192242833052, 0.06070826306913996, 0.06070826306913996, 0.06155143338954469, 0.06239460370994941, 0.06323777403035413, 0.06408094435075885, 0.06492411467116357, 0.3794266441821248, 0.8827993254637436, 0.8929173693086003, 0.9291736930860034, 0.9384485666104553, 0.9409780775716695, 0.9384485666104553, 0.9342327150084317, 0.9055649241146712, 0.8853288364249579, 0.8743676222596964, 0.45868465430016864, 0.1467116357504216, 0.13743676222596965, 0.1357504215851602, 0.1357504215851602, 0.1399662731871838, 0.14080944350758853, 0.14418212478920742, 0.1475548060708263, 0.15008431703204048, 0.16020236087689713, 0.8785834738617201, 0.927487352445194, 0.9443507588532883, 0.8920741989881956, 0.836424957841484, 0.16947723440134907, 0.16779089376053963, 0.17200674536256325, 0.1736930860033727, 0.18296795952782463, 0.19139966273187184, 0.19898819561551434, 0.20994940978077573, 0.22175379426644182, 0.2327150084317032, 0.7166947723440135, 0.8827993254637436, 0.9325463743676222, 0.9072512647554806, 0.806070826306914, 0.6205733558178752, 0.37268128161888703, 0.327150084317032, 0.31871838111298484, 0.31871838111298484, 0.321247892074199, 0.32377740303541314, 0.3263069139966273, 0.3305227655986509, 0.3305227655986509, 0.33473861720067455, 0.33642495784148396, 0.33811129848229343, 0.33979763912310285, 0.3414839797639123, 0.342327150084317, 0.3440134907251265, 0.3448566610455312, 0.3448566610455312, 0.3473861720067454, 0.3490725126475548, 0.357504215851602, 0.35581787521079256, 0.35328836424957843, 0.945193929173693, 0.948566610455312, 0.9460370994940978, 0.9367622259696459, 0.3600337268128162, 0.35581787521079256, 0.35413153456998314, 0.3524451939291737, 0.35328836424957843, 0.35328836424957843, 0.35413153456998314, 0.357504215851602, 0.3608768971332209, 0.37015177065767285, 0.3971332209106239, 0.5564924114671164, 0.8128161888701517], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MRP-L47.gap.json b/pfam_gap_rates/MRP-L47.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b6872ef3bcf50aea07f7c5e96828527d076996d
--- /dev/null
+++ b/pfam_gap_rates/MRP-L47.gap.json
@@ -0,0 +1 @@
+{"family": "MRP-L47", "n_seqs": 306, "length": 99, "gap_rates": [0.3333333333333333, 0.24836601307189543, 0.2222222222222222, 0.21895424836601307, 0.20915032679738563, 0.20915032679738563, 0.20915032679738563, 0.8856209150326797, 0.9444444444444444, 0.934640522875817, 0.8104575163398693, 0.20915032679738563, 0.21895424836601307, 0.19934640522875818, 0.24509803921568626, 0.8986928104575164, 0.6209150326797386, 0.4411764705882353, 0.1895424836601307, 0.16993464052287582, 0.14052287581699346, 0.1437908496732026, 0.9477124183006536, 0.8954248366013072, 0.20261437908496732, 0.08169934640522876, 0.058823529411764705, 0.032679738562091505, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.032679738562091505, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.02287581699346405, 0.0196078431372549, 0.0196078431372549, 0.02287581699346405, 0.02287581699346405, 0.02287581699346405, 0.02287581699346405, 0.026143790849673203, 0.026143790849673203, 0.013071895424836602, 0.013071895424836602, 0.042483660130718956, 0.02287581699346405, 0.013071895424836602, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.013071895424836602, 0.016339869281045753, 0.0196078431372549, 0.5816993464052288, 0.9019607843137255, 0.6143790849673203, 0.5718954248366013, 0.032679738562091505, 0.029411764705882353, 0.026143790849673203, 0.026143790849673203, 0.02287581699346405, 0.02287581699346405, 0.029411764705882353, 0.029411764705882353, 0.026143790849673203, 0.029411764705882353, 0.032679738562091505, 0.0392156862745098, 0.0392156862745098, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.042483660130718956, 0.0457516339869281], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MR_MLE_C.gap.json b/pfam_gap_rates/MR_MLE_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed8c4ab7ed0502dc74d1fbad725e81ba46145f16
--- /dev/null
+++ b/pfam_gap_rates/MR_MLE_C.gap.json
@@ -0,0 +1 @@
+{"family": "MR_MLE_C", "n_seqs": 4069, "length": 254, "gap_rates": [0.725731137871713, 0.5627918407471123, 0.4440894568690096, 0.3769968051118211, 0.3035143769968051, 0.3167854509707545, 0.27205701646596214, 0.3546325878594249, 0.20766773162939298, 0.20422708282133203, 0.277709510936348, 0.47333497173752764, 0.1275497665274023, 0.11403293192430572, 0.10174490046694519, 0.0924059965593512, 0.08503317768493487, 0.08306709265175719, 0.08282133202260998, 0.08257557139346276, 0.13025313344802164, 0.08822806586384861, 0.10469402801671172, 0.19808306709265175, 0.7031211599901696, 0.7581715409191447, 0.768985008601622, 0.8139592037355615, 0.8982550995330548, 0.9039075940034407, 0.9353649545342836, 0.9437208159252888, 0.948636028508233, 0.9368395183091669, 0.9203735561563038, 0.9026787908577046, 0.8874416318505776, 0.8011796510199066, 0.7638240353895306, 0.7414598181371345, 0.6770705333005652, 0.35807323666748586, 0.15802408454165642, 0.07004177930695503, 0.04644875890882281, 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\ No newline at end of file
diff --git a/pfam_gap_rates/MYCBPAP.gap.json b/pfam_gap_rates/MYCBPAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a4944d783ed10db774d0e9ded23757c8ccabef0
--- /dev/null
+++ b/pfam_gap_rates/MYCBPAP.gap.json
@@ -0,0 +1 @@
+{"family": "MYCBPAP", "n_seqs": 111, "length": 511, "gap_rates": [0.5675675675675675, 0.43243243243243246, 0.3963963963963964, 0.38738738738738737, 0.38738738738738737, 0.38738738738738737, 0.38738738738738737, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.38738738738738737, 0.38738738738738737, 0.38738738738738737, 0.38738738738738737, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.36936936936936937, 0.36936936936936937, 0.3783783783783784, 0.3783783783783784, 0.36936936936936937, 0.3783783783783784, 0.36936936936936937, 0.9369369369369369, 0.38738738738738737, 0.36936936936936937, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Maf.gap.json b/pfam_gap_rates/Maf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de708ecfb027ca749af9f6e04b8d46655862731e
--- /dev/null
+++ b/pfam_gap_rates/Maf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MecA.gap.json b/pfam_gap_rates/MecA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..405e1996c5ae79043034c79fddf7e0ffca60ac0f
--- /dev/null
+++ b/pfam_gap_rates/MecA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Meckelin.gap.json b/pfam_gap_rates/Meckelin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..647e18994be5a580120dbc2eb41699be0abc929e
--- /dev/null
+++ b/pfam_gap_rates/Meckelin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med1.gap.json b/pfam_gap_rates/Med1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06121c71ae479d179b257b6d21586417c549299e
--- /dev/null
+++ b/pfam_gap_rates/Med1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med13_C.gap.json b/pfam_gap_rates/Med13_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dc672e3045670ae2b3126f323e365a2a290e19d
--- /dev/null
+++ b/pfam_gap_rates/Med13_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med14.gap.json b/pfam_gap_rates/Med14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55f7b62abb6d3bbc1c3b6e6c115af18b735a2c6f
--- /dev/null
+++ b/pfam_gap_rates/Med14.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med24_N.gap.json b/pfam_gap_rates/Med24_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..105449581ab32f80449e99db405c23800b11539d
--- /dev/null
+++ b/pfam_gap_rates/Med24_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med27.gap.json b/pfam_gap_rates/Med27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0c5a3655882bec28e64d361a4522ee60b4ff373
--- /dev/null
+++ b/pfam_gap_rates/Med27.gap.json
@@ -0,0 +1 @@
+{"family": "Med27", "n_seqs": 164, "length": 126, "gap_rates": [0.9390243902439024, 0.5365853658536586, 0.4146341463414634, 0.3170731707317073, 0.2804878048780488, 0.18902439024390244, 0.8963414634146342, 0.9085365853658537, 0.9146341463414634, 0.9146341463414634, 0.9146341463414634, 0.9146341463414634, 0.9146341463414634, 0.9146341463414634, 0.9146341463414634, 0.9085365853658537, 0.8963414634146342, 0.8963414634146342, 0.1524390243902439, 0.13414634146341464, 0.12195121951219512, 0.11585365853658537, 0.09146341463414634, 0.09146341463414634, 0.09146341463414634, 0.09146341463414634, 0.07926829268292683, 0.07926829268292683, 0.07317073170731707, 0.06707317073170732, 0.054878048780487805, 0.04878048780487805, 0.042682926829268296, 0.036585365853658534, 0.03048780487804878, 0.03048780487804878, 0.0975609756097561, 0.10365853658536585, 0.10975609756097561, 0.10365853658536585, 0.34146341463414637, 0.7987804878048781, 0.8170731707317073, 0.75, 0.03048780487804878, 0.024390243902439025, 0.018292682926829267, 0.012195121951219513, 0.012195121951219513, 0.018292682926829267, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.0, 0.0, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.018292682926829267, 0.03048780487804878, 0.03048780487804878, 0.036585365853658534, 0.042682926829268296, 0.042682926829268296, 0.042682926829268296, 0.4329268292682927, 0.4268292682926829, 0.04878048780487805, 0.042682926829268296, 0.676829268292683, 0.7134146341463414, 0.6890243902439024, 0.6524390243902439, 0.042682926829268296, 0.042682926829268296, 0.07926829268292683, 0.042682926829268296, 0.042682926829268296, 0.042682926829268296, 0.04878048780487805, 0.054878048780487805, 0.054878048780487805, 0.6219512195121951, 0.6646341463414634, 0.6829268292682927, 0.7865853658536586, 0.8658536585365854, 0.8719512195121951, 0.8841463414634146, 0.8902439024390244, 0.9024390243902439, 0.9329268292682927, 0.9390243902439024, 0.926829268292683, 0.8963414634146342, 0.8841463414634146, 0.8780487804878049, 0.8658536585365854, 0.8353658536585366, 0.7134146341463414, 0.6829268292682927, 0.6341463414634146, 0.5853658536585366, 0.4634146341463415, 0.09146341463414634, 0.08536585365853659, 0.09146341463414634, 0.09146341463414634, 0.09146341463414634, 0.09146341463414634, 0.09146341463414634, 0.10365853658536585, 0.12195121951219512, 0.5975609756097561], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Meis_PKNOX_N.gap.json b/pfam_gap_rates/Meis_PKNOX_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4f9e547e6f4d277de7a832bb241e3bad1d0b878
--- /dev/null
+++ b/pfam_gap_rates/Meis_PKNOX_N.gap.json
@@ -0,0 +1 @@
+{"family": "Meis_PKNOX_N", "n_seqs": 214, "length": 86, "gap_rates": [0.4719626168224299, 0.29906542056074764, 0.2757009345794392, 0.2523364485981308, 0.22429906542056074, 0.205607476635514, 0.20093457943925233, 0.20093457943925233, 0.20093457943925233, 0.18691588785046728, 0.1822429906542056, 0.17289719626168223, 0.17289719626168223, 0.19158878504672897, 0.16822429906542055, 0.16822429906542055, 0.1588785046728972, 0.1588785046728972, 0.1588785046728972, 0.1542056074766355, 0.14018691588785046, 0.5514018691588785, 0.14485981308411214, 0.13551401869158877, 0.13551401869158877, 0.13551401869158877, 0.1261682242990654, 0.12149532710280374, 0.11682242990654206, 0.11682242990654206, 0.11682242990654206, 0.12149532710280374, 0.12149532710280374, 0.12149532710280374, 0.12149532710280374, 0.12149532710280374, 0.11682242990654206, 0.11214953271028037, 0.0794392523364486, 0.10747663551401869, 0.10747663551401869, 0.11214953271028037, 0.11682242990654206, 0.12149532710280374, 0.11682242990654206, 0.11214953271028037, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.09345794392523364, 0.0794392523364486, 0.07009345794392523, 0.07476635514018691, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09813084112149532, 0.09813084112149532, 0.09813084112149532, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.12149532710280374, 0.1822429906542056, 0.19158878504672897, 0.27102803738317754, 0.4392523364485981, 0.8551401869158879], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Met_10.gap.json b/pfam_gap_rates/Met_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3209185ddcb385e2673613d41243d27f5e3d00de
--- /dev/null
+++ b/pfam_gap_rates/Met_10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Met_asp_mut_E.gap.json b/pfam_gap_rates/Met_asp_mut_E.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dada4add1dc04c0ef994dca57832e3ec3ef0d11d
--- /dev/null
+++ b/pfam_gap_rates/Met_asp_mut_E.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Metalloenzyme.gap.json b/pfam_gap_rates/Metalloenzyme.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8bfdc42e0b1f836659aa8be2b5fabe53ac428432
--- /dev/null
+++ b/pfam_gap_rates/Metalloenzyme.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/Metallophos.gap.json b/pfam_gap_rates/Metallophos.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c85fc201177fe6dcf3d3e09d5f7f8742d7cb53fc
--- /dev/null
+++ b/pfam_gap_rates/Metallophos.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltrans_SAM.gap.json b/pfam_gap_rates/Methyltrans_SAM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62466076a980945580279e39fd37ab13ae0107d6
--- /dev/null
+++ b/pfam_gap_rates/Methyltrans_SAM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_16.gap.json b/pfam_gap_rates/Methyltransf_16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..844039cf49fc2667e97dae2728961fdcaefdaa69
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_16.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_22.gap.json b/pfam_gap_rates/Methyltransf_22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b58c2273e8198a13ffc83a7368f208b8d00c8e7
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_22.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_28.gap.json b/pfam_gap_rates/Methyltransf_28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14bf611eb7a77ce35018b341d30576f63e87fe19
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_28.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mfa2.gap.json b/pfam_gap_rates/Mfa2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc756b10276dbf87ffbeac3748e33c24073ac1ae
--- /dev/null
+++ b/pfam_gap_rates/Mfa2.gap.json
@@ -0,0 +1 @@
+{"family": "Mfa2", "n_seqs": 122, "length": 375, "gap_rates": [0.639344262295082, 0.4918032786885246, 0.45081967213114754, 0.4426229508196721, 0.5573770491803278, 0.4672131147540984, 0.36885245901639346, 0.3442622950819672, 0.3442622950819672, 0.3442622950819672, 0.3360655737704918, 0.3360655737704918, 0.9098360655737705, 0.36065573770491804, 0.3442622950819672, 0.3360655737704918, 0.32786885245901637, 0.9344262295081968, 0.9426229508196722, 0.8934426229508197, 0.4672131147540984, 0.319672131147541, 0.27049180327868855, 0.22950819672131148, 0.22950819672131148, 0.22131147540983606, 0.19672131147540983, 0.18032786885245902, 0.16393442622950818, 0.14754098360655737, 0.14754098360655737, 0.12295081967213115, 0.09836065573770492, 0.08196721311475409, 0.08196721311475409, 0.07377049180327869, 0.07377049180327869, 0.07377049180327869, 0.07377049180327869, 0.07377049180327869, 0.09016393442622951, 0.07377049180327869, 0.07377049180327869, 0.08196721311475409, 0.8688524590163934, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Mg_chelatase.gap.json b/pfam_gap_rates/Mg_chelatase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2caca56fa9bfebdb566b7f5bd98c2a04484b1a08
--- /dev/null
+++ b/pfam_gap_rates/Mg_chelatase.gap.json
@@ -0,0 +1 @@
+{"family": "Mg_chelatase", "n_seqs": 2484, "length": 208, "gap_rates": [0.35104669887278583, 0.26610305958132047, 0.24074074074074073, 0.2359098228663446, 0.23309178743961353, 0.23107890499194847, 0.22987117552334943, 0.22987117552334943, 0.2290660225442834, 0.22826086956521738, 0.22705314009661837, 0.22624798711755234, 0.2250402576489533, 0.22383252818035426, 0.22383252818035426, 0.22342995169082125, 0.22342995169082125, 0.22302737520128824, 0.2222222222222222, 0.22181964573268922, 0.22181964573268922, 0.2210144927536232, 0.22020933977455717, 0.22061191626409019, 0.21859903381642512, 0.2181964573268921, 0.21578099838969403, 0.21618357487922704, 0.2181964573268921, 0.2181964573268921, 0.21859903381642512, 0.21859903381642512, 0.21980676328502416, 0.21980676328502416, 0.21980676328502416, 0.22020933977455717, 0.21457326892109502, 0.21336553945249598, 0.213768115942029, 0.213768115942029, 0.214170692431562, 0.214170692431562, 0.21457326892109502, 0.21457326892109502, 0.21497584541062803, 0.21497584541062803, 0.21578099838969403, 0.21618357487922704, 0.21739130434782608, 0.21859903381642512, 0.2214170692431562, 0.22383252818035426, 0.22826086956521738, 0.22946859903381642, 0.23309178743961353, 0.24396135265700483, 0.24758454106280192, 0.25, 0.249597423510467, 0.24919484702093397, 0.24919484702093397, 0.2532206119162641, 0.25442834138486314, 0.25402576489533013, 0.25402576489533013, 0.6115136876006442, 0.37600644122383253, 0.2918679549114332, 0.26207729468599034, 0.2572463768115942, 0.25201288244766507, 0.25120772946859904, 0.250805152979066, 0.25120772946859904, 0.25161030595813205, 0.250805152979066, 0.25, 0.25, 0.249597423510467, 0.249597423510467, 0.249597423510467, 0.249597423510467, 0.25, 0.250402576489533, 0.250805152979066, 0.25, 0.24838969404186795, 0.2459742351046699, 0.1855877616747182, 0.13043478260869565, 0.12439613526570048, 0.12198067632850242, 0.11151368760064412, 0.08695652173913043, 0.08735909822866345, 0.0889694041867955, 0.8868760064412239, 0.08977455716586151, 0.09057971014492754, 0.0889694041867955, 0.08816425120772947, 0.08856682769726248, 0.08735909822866345, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08574879227053141, 0.08574879227053141, 0.08574879227053141, 0.08574879227053141, 0.08413848631239935, 0.08333333333333333, 0.0821256038647343, 0.08091787439613526, 0.08333333333333333, 0.08373590982286634, 0.08172302737520129, 0.08413848631239935, 0.08413848631239935, 0.08494363929146538, 0.08454106280193237, 0.0853462157809984, 0.08494363929146538, 0.08494363929146538, 0.08373590982286634, 0.08373590982286634, 0.08413848631239935, 0.08373590982286634, 0.08373590982286634, 0.08373590982286634, 0.08333333333333333, 0.08293075684380032, 0.08333333333333333, 0.08293075684380032, 0.08293075684380032, 0.08413848631239935, 0.08454106280193237, 0.08494363929146538, 0.08494363929146538, 0.08454106280193237, 0.08454106280193237, 0.08494363929146538, 0.08494363929146538, 0.08494363929146538, 0.0853462157809984, 0.0853462157809984, 0.08574879227053141, 0.08574879227053141, 0.0853462157809984, 0.08494363929146538, 0.08454106280193237, 0.08454106280193237, 0.0821256038647343, 0.08172302737520129, 0.08132045088566828, 0.08132045088566828, 0.08172302737520129, 0.07890499194847021, 0.07729468599033816, 0.07769726247987117, 0.2105475040257649, 0.2459742351046699, 0.26207729468599034, 0.27093397745571657, 0.28462157809983896, 0.2894524959742351, 0.2834138486312399, 0.3442028985507246, 0.3385668276972625, 0.2898550724637681, 0.2894524959742351, 0.28784219001610306, 0.286634460547504, 0.2922705314009662, 0.28743961352657005, 0.2777777777777778, 0.2773752012882448, 0.2773752012882448, 0.27697262479871176, 0.27697262479871176, 0.27657004830917875, 0.27657004830917875, 0.27657004830917875, 0.27697262479871176, 0.2773752012882448, 0.2773752012882448, 0.2773752012882448, 0.2777777777777778, 0.2785829307568438, 0.2785829307568438, 0.2785829307568438, 0.2785829307568438, 0.2785829307568438, 0.27898550724637683, 0.27979066022544286, 0.27979066022544286, 0.28019323671497587, 0.28019323671497587, 0.28019323671497587, 0.28140096618357485, 0.2826086956521739, 0.28784219001610306, 0.2999194847020934, 0.3172302737520129, 0.355475040257649, 0.41988727858293073, 0.5314009661835749, 0.712157809983897], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mgm101p.gap.json b/pfam_gap_rates/Mgm101p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ffcc6409197724b1044a324289695cb341ed3f9f
--- /dev/null
+++ b/pfam_gap_rates/Mgm101p.gap.json
@@ -0,0 +1 @@
+{"family": "Mgm101p", "n_seqs": 141, "length": 179, "gap_rates": [0.15602836879432624, 0.14893617021276595, 0.06382978723404255, 0.05673758865248227, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.02127659574468085, 0.014184397163120567, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.9361702127659575, 0.9432624113475178, 0.9432624113475178, 0.9290780141843972, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.014184397163120567, 0.014184397163120567, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.0070921985815602835, 0.0070921985815602835, 0.9148936170212766, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.9148936170212766, 0.9078014184397163, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.03546099290780142, 0.0425531914893617, 0.0425531914893617, 0.03546099290780142, 0.03546099290780142, 0.07801418439716312, 0.05673758865248227, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.05673758865248227, 0.05673758865248227, 0.06382978723404255, 0.9432624113475178, 0.6524822695035462, 0.09219858156028368, 0.09219858156028368, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.10638297872340426, 0.2127659574468085], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MgtE.gap.json b/pfam_gap_rates/MgtE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11ff9c8783ffedf3eb12a4f3b4e6e3e5b1c1e807
--- /dev/null
+++ b/pfam_gap_rates/MgtE.gap.json
@@ -0,0 +1 @@
+{"family": "MgtE", "n_seqs": 2215, "length": 147, "gap_rates": [0.20632054176072234, 0.0744920993227991, 0.04153498871331828, 0.033408577878103835, 0.030248306997742665, 0.02528216704288939, 0.024830699774266364, 0.02437923250564334, 0.02437923250564334, 0.02437923250564334, 0.02437923250564334, 0.02437923250564334, 0.02347629796839729, 0.02347629796839729, 0.02347629796839729, 0.02347629796839729, 0.023024830699774266, 0.023024830699774266, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.02076749435665914, 0.020316027088036117, 0.019864559819413093, 0.028442437923250564, 0.03250564334085779, 0.030248306997742665, 0.05598194130925508, 0.059593679458239276, 0.04559819413092551, 0.8460496613995485, 0.14085778781038374, 0.04559819413092551, 0.035214446952595936, 0.032054176072234764, 0.029345372460496615, 0.026636568848758466, 0.025733634311512415, 0.023927765237020317, 0.023024830699774266, 0.02167042889390519, 0.02076749435665914, 0.015349887133182845, 0.9322799097065463, 0.9340857787810384, 0.9354401805869075, 0.9354401805869075, 0.9376975169300226, 0.9404063205417608, 0.9404063205417608, 0.9358916478555305, 0.9354401805869075, 0.9354401805869075, 0.9336343115124154, 0.9304740406320542, 0.014898419864559819, 0.014898419864559819, 0.014898419864559819, 0.014898419864559819, 0.014446952595936794, 0.014446952595936794, 0.01399548532731377, 0.01399548532731377, 0.014446952595936794, 0.014446952595936794, 0.01399548532731377, 0.01399548532731377, 0.01399548532731377, 0.01580135440180587, 0.016252821670428894, 0.03431151241534989, 0.02618510158013544, 0.04108352144469526, 0.04108352144469526, 0.03069977426636569, 0.02347629796839729, 0.6528216704288939, 0.7124153498871332, 0.7670428893905192, 0.854627539503386, 0.8893905191873589, 0.7846501128668172, 0.7372460496613995, 0.6749435665914221, 0.5855530474040632, 0.05869074492099323, 0.03702031602708804, 0.031151241534988713, 0.027539503386004513, 0.025733634311512415, 0.02708803611738149, 0.01851015801354402, 0.013544018058690745, 0.013544018058690745, 0.01309255079006772, 0.01580135440180587, 0.013544018058690745, 0.012641083521444696, 0.013544018058690745, 0.012641083521444696, 0.012641083521444696, 0.011738148984198645, 0.012641083521444696, 0.013544018058690745, 0.013544018058690745, 0.01580135440180587, 0.012641083521444696, 0.7733634311512415, 0.7602708803611739, 0.7584650112866818, 0.01399548532731377, 0.01309255079006772, 0.01218961625282167, 0.012641083521444696, 0.037923250564334085, 0.013544018058690745, 0.01309255079006772, 0.01309255079006772, 0.014446952595936794, 0.01399548532731377, 0.01399548532731377, 0.01399548532731377, 0.01399548532731377, 0.014898419864559819, 0.014446952595936794, 0.014446952595936794, 0.014898419864559819, 0.02618510158013544, 0.016252821670428894, 0.016704288939051917, 0.017155756207674944, 0.017155756207674944, 0.017155756207674944, 0.017607223476297968, 0.01805869074492099, 0.017607223476297968, 0.017607223476297968, 0.01851015801354402, 0.018961625282167043, 0.019413092550790066, 0.019864559819413093, 0.02076749435665914, 0.02167042889390519, 0.023024830699774266, 0.03295711060948081, 0.11512415349887133], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MinC_N.gap.json b/pfam_gap_rates/MinC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8abce000b7dc4345f70932ab3e570c83384082b
--- /dev/null
+++ b/pfam_gap_rates/MinC_N.gap.json
@@ -0,0 +1 @@
+{"family": "MinC_N", "n_seqs": 271, "length": 109, "gap_rates": [0.7822878228782287, 0.7232472324723247, 0.6162361623616236, 0.4981549815498155, 0.34686346863468637, 0.3505535055350554, 0.9261992619926199, 0.08487084870848709, 0.07380073800738007, 0.07380073800738007, 0.07011070110701106, 0.06642066420664207, 0.06642066420664207, 0.06642066420664207, 0.06642066420664207, 0.05166051660516605, 0.04797047970479705, 0.05166051660516605, 0.04428044280442804, 0.04428044280442804, 0.055350553505535055, 0.04059040590405904, 0.033210332103321034, 0.033210332103321034, 0.025830258302583026, 0.025830258302583026, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.01107011070110701, 0.007380073800738007, 0.007380073800738007, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.007380073800738007, 0.007380073800738007, 0.01107011070110701, 0.007380073800738007, 0.007380073800738007, 0.02952029520295203, 0.01107011070110701, 0.007380073800738007, 0.007380073800738007, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0036900369003690036, 0.45018450184501846, 0.6162361623616236, 0.2767527675276753, 0.007380073800738007, 0.007380073800738007, 0.0036900369003690036, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.014760147601476014, 0.01845018450184502, 0.01845018450184502, 0.025830258302583026, 0.41697416974169743, 0.2656826568265683, 0.21033210332103322, 0.14391143911439114, 0.19557195571955718, 0.17343173431734318, 0.17712177121771217, 0.2066420664206642, 0.21033210332103322, 0.19557195571955718, 0.22140221402214022, 0.922509225092251, 0.9040590405904059, 0.22509225092250923, 0.22509225092250923, 0.22878228782287824, 0.23247232472324722, 0.24354243542435425, 0.25092250922509224, 0.2878228782287823, 0.3505535055350554, 0.3874538745387454, 0.4317343173431734, 0.4833948339483395, 0.5645756457564576, 0.6605166051660517, 0.8154981549815498], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mito_fiss_Elm1.gap.json b/pfam_gap_rates/Mito_fiss_Elm1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf5cd641961d2ddbe8a851ea63ca59e48a50591a
--- /dev/null
+++ b/pfam_gap_rates/Mito_fiss_Elm1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mitofilin.gap.json b/pfam_gap_rates/Mitofilin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88396041fe877cd18b333223191902d0f8aecde6
--- /dev/null
+++ b/pfam_gap_rates/Mitofilin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MltA.gap.json b/pfam_gap_rates/MltA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..327896d3b83a4828e9cff6725eaa225236ad2fc0
--- /dev/null
+++ b/pfam_gap_rates/MltA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mn_catalase.gap.json b/pfam_gap_rates/Mn_catalase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63bac7260b6579ef0061f48662dc275322ab50f1
--- /dev/null
+++ b/pfam_gap_rates/Mn_catalase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MnhB.gap.json b/pfam_gap_rates/MnhB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b55ecc4a91ced65607ecafd315402775a4ce8d59
--- /dev/null
+++ b/pfam_gap_rates/MnhB.gap.json
@@ -0,0 +1 @@
+{"family": "MnhB", "n_seqs": 930, "length": 131, "gap_rates": [0.4612903225806452, 0.23333333333333334, 0.13010752688172042, 0.06666666666666667, 0.03225806451612903, 0.02258064516129032, 0.01935483870967742, 0.015053763440860216, 0.013978494623655914, 0.013978494623655914, 0.013978494623655914, 0.012903225806451613, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.00967741935483871, 0.00967741935483871, 0.010752688172043012, 0.00967741935483871, 0.010752688172043012, 0.00967741935483871, 0.00967741935483871, 0.008602150537634409, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.010752688172043012, 0.010752688172043012, 0.011827956989247311, 0.011827956989247311, 0.011827956989247311, 0.011827956989247311, 0.012903225806451613, 0.011827956989247311, 0.011827956989247311, 0.011827956989247311, 0.011827956989247311, 0.010752688172043012, 0.011827956989247311, 0.013978494623655914, 0.012903225806451613, 0.017204301075268817, 0.01827956989247312, 0.01935483870967742, 0.8032258064516129, 0.1053763440860215, 0.06774193548387097, 0.05161290322580645, 0.02258064516129032, 0.017204301075268817, 0.01827956989247312, 0.015053763440860216, 0.02043010752688172, 0.635483870967742, 0.7064516129032258, 0.37311827956989246, 0.19462365591397848, 0.011827956989247311, 0.00967741935483871, 0.00967741935483871, 0.010752688172043012, 0.010752688172043012, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.010752688172043012, 0.010752688172043012, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.010752688172043012, 0.035483870967741936, 0.13225806451612904, 0.06559139784946237, 0.034408602150537634, 0.016129032258064516, 0.01827956989247312, 0.025806451612903226, 0.047311827956989246, 0.053763440860215055, 0.03655913978494624, 0.041935483870967745, 0.035483870967741936, 0.13225806451612904, 0.12580645161290321, 0.886021505376344, 0.9354838709677419, 0.32150537634408605, 0.13225806451612904, 0.25161290322580643, 0.16451612903225807, 0.20967741935483872, 0.09247311827956989, 0.043010752688172046, 0.8881720430107527, 0.02903225806451613, 0.02795698924731183, 0.026881720430107527, 0.02903225806451613, 0.03118279569892473, 0.03225806451612903, 0.034408602150537634, 0.10752688172043011, 0.03655913978494624, 0.03978494623655914, 0.041935483870967745, 0.046236559139784944, 0.04946236559139785, 0.05268817204301075, 0.060215053763440864, 0.06129032258064516, 0.06344086021505377, 0.06666666666666667, 0.08172043010752689, 0.310752688172043, 0.8795698924731182], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mo-nitro_C.gap.json b/pfam_gap_rates/Mo-nitro_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9a127b60245505b66063bcef10b633b7c4321b7
--- /dev/null
+++ b/pfam_gap_rates/Mo-nitro_C.gap.json
@@ -0,0 +1 @@
+{"family": "Mo-nitro_C", "n_seqs": 150, "length": 83, "gap_rates": [0.56, 0.07333333333333333, 0.05333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.0, 0.0, 0.006666666666666667, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013333333333333334, 0.0, 0.0, 0.006666666666666667, 0.09333333333333334, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.013333333333333334, 0.02666666666666667, 0.03333333333333333, 0.04, 0.04, 0.04666666666666667, 0.04666666666666667, 0.07333333333333333, 0.08, 0.08666666666666667, 0.08666666666666667, 0.23333333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mob_Pre.gap.json b/pfam_gap_rates/Mob_Pre.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a97f98b1473a09d6680c882f3799f5fa31a11b6
--- /dev/null
+++ b/pfam_gap_rates/Mob_Pre.gap.json
@@ -0,0 +1 @@
+{"family": "Mob_Pre", "n_seqs": 293, "length": 252, "gap_rates": [0.7542662116040956, 0.6825938566552902, 0.825938566552901, 0.5870307167235495, 0.5767918088737202, 0.5563139931740614, 0.5255972696245734, 0.515358361774744, 0.5085324232081911, 0.4197952218430034, 0.4061433447098976, 0.3924914675767918, 0.378839590443686, 0.8703071672354948, 0.3174061433447099, 0.28668941979522183, 0.2593856655290102, 0.29692832764505117, 0.25597269624573377, 0.24914675767918087, 0.24573378839590443, 0.24573378839590443, 0.24232081911262798, 0.23208191126279865, 0.22866894197952217, 0.22525597269624573, 0.22525597269624573, 0.21843003412969283, 0.21843003412969283, 0.2150170648464164, 0.1945392491467577, 0.3412969283276451, 0.931740614334471, 0.9419795221843004, 0.9453924914675768, 0.9488054607508533, 0.9488054607508533, 0.9488054607508533, 0.9488054607508533, 0.9488054607508533, 0.9488054607508533, 0.9488054607508533, 0.9488054607508533, 0.9453924914675768, 0.9453924914675768, 0.9419795221843004, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Mob_synth_C.gap.json b/pfam_gap_rates/Mob_synth_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b613ad84d88621d0425308199d7b8d751af3985d
--- /dev/null
+++ b/pfam_gap_rates/Mob_synth_C.gap.json
@@ -0,0 +1 @@
+{"family": "Mob_synth_C", "n_seqs": 1591, "length": 137, "gap_rates": [0.6316781898177247, 0.12507856693903205, 0.04085480829666876, 0.028284098051539912, 0.028284098051539912, 0.028284098051539912, 0.028284098051539912, 0.028284098051539912, 0.02765556253928347, 0.02702702702702703, 0.02702702702702703, 0.026398491514770583, 0.19861722187303582, 0.03519798868636078, 0.03771213073538655, 0.06473915776241358, 0.08925204274041483, 0.9258328095537398, 0.12256442489000628, 0.09679446888749214, 0.06599622878692646, 0.03016970458830924, 0.0251414204902577, 0.02451288497800126, 0.0251414204902577, 0.02451288497800126, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.020741671904462602, 0.020741671904462602, 0.02011313639220616, 0.02262727844123193, 0.02262727844123193, 0.023884349465744813, 0.0295411690760528, 0.028284098051539912, 0.0251414204902577, 0.02262727844123193, 0.02262727844123193, 0.02451288497800126, 0.026398491514770583, 0.05845380263984915, 0.7008170961659334, 0.05845380263984915, 0.03771213073538655, 0.021370207416719043, 0.8510370835952231, 0.7108736643620365, 0.01697045883092395, 0.01508485229415462, 0.013827781269641735, 0.014456316781898177, 0.014456316781898177, 0.014456316781898177, 0.013827781269641735, 0.013827781269641735, 0.014456316781898177, 0.9409176618478944, 0.9459459459459459, 0.9396605908233815, 0.018227529855436832, 0.016341923318667503, 0.014456316781898177, 0.01508485229415462, 0.08548082966687617, 0.03896920175989944, 0.011313639220615965, 0.010685103708359522, 0.011313639220615965, 0.010685103708359522, 0.010685103708359522, 0.010685103708359522, 0.008799497171590195, 0.0069138906348208675, 0.00754242614707731, 0.00754242614707731, 0.00754242614707731, 0.006285355122564425, 0.006285355122564425, 0.006285355122564425, 0.006285355122564425, 0.006285355122564425, 0.0056568196103079825, 0.0056568196103079825, 0.0056568196103079825, 0.0056568196103079825, 0.0056568196103079825, 0.0056568196103079825, 0.0056568196103079825, 0.0056568196103079825, 0.00502828409805154, 0.0056568196103079825, 0.0056568196103079825, 0.0069138906348208675, 0.008170961659333752, 0.009428032683846637, 0.009428032683846637, 0.009428032683846637, 0.010685103708359522, 0.010685103708359522, 0.011313639220615965, 0.9321181646763043, 0.013827781269641735, 0.013199245757385292, 0.01257071024512885, 0.01257071024512885, 0.013199245757385292, 0.016341923318667503, 0.02262727844123193, 0.02451288497800126, 0.023255813953488372, 0.0251414204902577, 0.04714016341923319, 0.8969201759899434, 0.15901948460087995, 0.14079195474544312, 0.11753614079195475, 0.06725329981143935, 0.03205531112507857, 0.03142677561282212, 0.03205531112507857, 0.034569453174104335, 0.036455059710873663, 0.03771213073538655, 0.03834066624764299, 0.039597737272155875, 0.04211187932118165, 0.04902576995600252, 0.059710873664362035, 0.07793840351979887, 0.08799497171590195, 0.10685103708359522, 0.1703331238214959, 0.22061596480201132, 0.3130106851037084, 0.9358893777498428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mod_r.gap.json b/pfam_gap_rates/Mod_r.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2b7fc0beb88b5b8eebd5eb6f1f3c18e5eacbeea
--- /dev/null
+++ b/pfam_gap_rates/Mod_r.gap.json
@@ -0,0 +1 @@
+{"family": "Mod_r", "n_seqs": 380, "length": 166, "gap_rates": [0.8157894736842105, 0.3605263157894737, 0.22631578947368422, 0.1868421052631579, 0.16052631578947368, 0.15789473684210525, 0.15, 0.13157894736842105, 0.12894736842105264, 0.12631578947368421, 0.12105263157894737, 0.11842105263157894, 0.11842105263157894, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11315789473684211, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11842105263157894, 0.8947368421052632, 0.8973684210526316, 0.8947368421052632, 0.11315789473684211, 0.11315789473684211, 0.8842105263157894, 0.12631578947368421, 0.10789473684210527, 0.09473684210526316, 0.08157894736842106, 0.07368421052631578, 0.07105263157894737, 0.06842105263157895, 0.06842105263157895, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.060526315789473685, 0.05263157894736842, 0.05263157894736842, 0.04473684210526316, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.039473684210526314, 0.039473684210526314, 0.042105263157894736, 0.03684210526315789, 0.04473684210526316, 0.039473684210526314, 0.039473684210526314, 0.03684210526315789, 0.03684210526315789, 0.039473684210526314, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.039473684210526314, 0.039473684210526314, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.042105263157894736, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.03684210526315789, 0.8657894736842106, 0.039473684210526314, 0.042105263157894736, 0.039473684210526314, 0.03684210526315789, 0.034210526315789476, 0.034210526315789476, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.034210526315789476, 0.034210526315789476, 0.034210526315789476, 0.034210526315789476, 0.034210526315789476, 0.034210526315789476, 0.02894736842105263, 0.034210526315789476, 0.02894736842105263, 0.031578947368421054, 0.034210526315789476, 0.9447368421052632, 0.034210526315789476, 0.034210526315789476, 0.034210526315789476, 0.034210526315789476, 0.03684210526315789, 0.039473684210526314, 0.03684210526315789, 0.039473684210526314, 0.042105263157894736, 0.042105263157894736, 0.039473684210526314, 0.039473684210526314, 0.03684210526315789, 0.034210526315789476, 0.034210526315789476, 0.03684210526315789, 0.039473684210526314, 0.039473684210526314, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.05263157894736842, 0.05263157894736842, 0.05526315789473684, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.060526315789473685, 0.06578947368421052, 0.718421052631579, 0.7289473684210527, 0.7921052631578948, 0.8447368421052631, 0.8973684210526316, 0.9315789473684211, 0.9473684210526315, 0.9342105263157895, 0.9131578947368421, 0.8736842105263158, 0.8157894736842105, 0.7526315789473684, 0.7210526315789474, 0.7131578947368421, 0.060526315789473685, 0.05789473684210526, 0.060526315789473685, 0.060526315789473685, 0.060526315789473685, 0.06315789473684211, 0.06315789473684211, 0.06315789473684211, 0.06315789473684211, 0.06315789473684211, 0.06315789473684211, 0.06578947368421052, 0.06842105263157895, 0.07894736842105263, 0.08421052631578947, 0.08947368421052632, 0.09210526315789473, 0.09736842105263158, 0.1, 0.10263157894736842, 0.10263157894736842, 0.12894736842105264, 0.25526315789473686, 0.34210526315789475, 0.3605263157894737, 0.8236842105263158], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MoeA_C.gap.json b/pfam_gap_rates/MoeA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ade574d875ae40da3e55aa467970bbbfa647dc4
--- /dev/null
+++ b/pfam_gap_rates/MoeA_C.gap.json
@@ -0,0 +1 @@
+{"family": "MoeA_C", "n_seqs": 2050, "length": 78, "gap_rates": [0.7478048780487805, 0.2634146341463415, 0.15317073170731707, 0.11463414634146342, 0.09219512195121951, 0.08292682926829269, 0.07073170731707316, 0.06536585365853659, 0.05170731707317073, 0.03609756097560975, 0.02926829268292683, 0.024390243902439025, 0.09219512195121951, 0.015609756097560976, 0.013658536585365854, 0.012682926829268294, 0.011707317073170732, 0.011707317073170732, 0.01024390243902439, 0.01024390243902439, 0.01024390243902439, 0.01024390243902439, 0.01024390243902439, 0.8751219512195122, 0.615609756097561, 0.2073170731707317, 0.17073170731707318, 0.11756097560975609, 0.05024390243902439, 0.059024390243902436, 0.07951219512195122, 0.02195121951219512, 0.006341463414634147, 0.004878048780487805, 0.004878048780487805, 0.06195121951219512, 0.2546341463414634, 0.9292682926829269, 0.013170731707317073, 0.0034146341463414634, 0.002926829268292683, 0.0034146341463414634, 0.003902439024390244, 0.002926829268292683, 0.0024390243902439024, 0.0014634146341463415, 0.0014634146341463415, 0.000975609756097561, 0.0014634146341463415, 0.0014634146341463415, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.000975609756097561, 0.001951219512195122, 0.001951219512195122, 0.001951219512195122, 0.001951219512195122, 0.001951219512195122, 0.004390243902439025, 0.006829268292682927, 0.013170731707317073, 0.12926829268292683, 0.9478048780487804, 0.9497560975609756, 0.9424390243902439, 0.025853658536585365, 0.0175609756097561, 0.02, 0.0224390243902439, 0.025365853658536587, 0.033170731707317075, 0.04780487804878049, 0.05707317073170732, 0.07121951219512195, 0.10195121951219512, 0.21365853658536585, 0.47560975609756095], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Motile_Sperm.gap.json b/pfam_gap_rates/Motile_Sperm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0feafb7d8d270f0635fca9e7b8b801e8f21857ee
--- /dev/null
+++ b/pfam_gap_rates/Motile_Sperm.gap.json
@@ -0,0 +1 @@
+{"family": "Motile_Sperm", "n_seqs": 1975, "length": 112, "gap_rates": [0.39949367088607596, 0.3478481012658228, 0.30683544303797466, 0.28354430379746837, 0.2648101265822785, 0.2562025316455696, 0.46784810126582277, 0.23189873417721518, 0.21367088607594936, 0.20050632911392405, 0.19240506329113924, 0.18177215189873416, 0.1681012658227848, 0.25721518987341774, 0.1691139240506329, 0.3468354430379747, 0.3053164556962025, 0.28556962025316457, 0.10430379746835443, 0.09316455696202532, 0.08658227848101266, 0.0789873417721519, 0.06582278481012659, 0.06278481012658228, 0.05468354430379747, 0.053164556962025315, 0.052151898734177214, 0.051645569620253164, 0.05012658227848101, 0.044556962025316456, 0.043544303797468355, 0.03848101265822785, 0.03746835443037975, 0.033924050632911394, 0.03291139240506329, 0.029367088607594936, 0.021772151898734177, 0.021772151898734177, 0.021265822784810127, 0.02329113924050633, 0.020759493670886076, 0.021772151898734177, 0.03949367088607595, 0.017721518987341773, 0.013670886075949367, 0.013164556962025316, 0.010632911392405063, 0.010126582278481013, 0.010632911392405063, 0.010126582278481013, 0.009113924050632912, 0.011645569620253165, 0.011645569620253165, 0.011139240506329114, 0.014177215189873417, 0.015189873417721518, 0.01569620253164557, 0.016708860759493672, 0.01569620253164557, 0.01620253164556962, 0.030379746835443037, 0.030886075949367087, 0.03291139240506329, 0.08455696202531646, 0.04759493670886076, 0.044050632911392405, 0.04607594936708861, 0.052658227848101265, 0.2830379746835443, 0.25518987341772154, 0.23291139240506328, 0.23139240506329115, 0.23139240506329115, 0.12354430379746835, 0.14177215189873418, 0.17772151898734176, 0.1939240506329114, 0.8025316455696202, 0.9240506329113924, 0.9412658227848101, 0.8962025316455696, 0.6131645569620253, 0.0840506329113924, 0.08354430379746836, 0.08455696202531646, 0.08556962025316456, 0.08708860759493671, 0.08911392405063291, 0.09518987341772152, 0.09670886075949367, 0.10025316455696202, 0.10582278481012658, 0.11037974683544304, 0.369620253164557, 0.27443037974683543, 0.2470886075949367, 0.26177215189873415, 0.2622784810126582, 0.30278481012658226, 0.3346835443037975, 0.4410126582278481, 0.4217721518987342, 0.43746835443037974, 0.41012658227848103, 0.42632911392405065, 0.45772151898734176, 0.499746835443038, 0.5362025316455696, 0.6050632911392405, 0.6708860759493671, 0.7741772151898734, 0.9012658227848102], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Moulting_cycle.gap.json b/pfam_gap_rates/Moulting_cycle.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f14f11e0206588738b5d5d46e10cf0a6f3364af0
--- /dev/null
+++ b/pfam_gap_rates/Moulting_cycle.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MqsA_antitoxin.gap.json b/pfam_gap_rates/MqsA_antitoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc1570f1d12e1bc5e2d3e6e8efb2d882442b435c
--- /dev/null
+++ b/pfam_gap_rates/MqsA_antitoxin.gap.json
@@ -0,0 +1 @@
+{"family": "MqsA_antitoxin", "n_seqs": 139, "length": 133, "gap_rates": [0.6906474820143885, 0.5683453237410072, 0.38848920863309355, 0.38848920863309355, 0.37410071942446044, 0.3669064748201439, 0.3669064748201439, 0.381294964028777, 0.3669064748201439, 0.33093525179856115, 0.33093525179856115, 0.3237410071942446, 0.31654676258992803, 0.31654676258992803, 0.31654676258992803, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.30935251798561153, 0.31654676258992803, 0.31654676258992803, 0.3669064748201439, 0.3597122302158273, 0.4316546762589928, 0.31654676258992803, 0.33093525179856115, 0.30935251798561153, 0.31654676258992803, 0.2949640287769784, 0.302158273381295, 0.2949640287769784, 0.2949640287769784, 0.2949640287769784, 0.2949640287769784, 0.2949640287769784, 0.28776978417266186, 0.2805755395683453, 0.2805755395683453, 0.2733812949640288, 0.2733812949640288, 0.9424460431654677, 0.2589928057553957, 0.26618705035971224, 0.2733812949640288, 0.26618705035971224, 0.2589928057553957, 0.2446043165467626, 0.2302158273381295, 0.22302158273381295, 0.20863309352517986, 0.2014388489208633, 0.2014388489208633, 0.22302158273381295, 0.23741007194244604, 0.2014388489208633, 0.2014388489208633, 0.20863309352517986, 0.20863309352517986, 0.2302158273381295, 0.2446043165467626, 0.17266187050359713, 0.4028776978417266, 0.9424460431654677, 0.18705035971223022, 0.1079136690647482, 0.10071942446043165, 0.1079136690647482, 0.10071942446043165, 0.10071942446043165, 0.10071942446043165, 0.10071942446043165, 0.10071942446043165, 0.10071942446043165, 0.10071942446043165, 0.10071942446043165, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.08633093525179857, 0.08633093525179857, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.10071942446043165, 0.10071942446043165, 0.12949640287769784, 0.1510791366906475, 0.14388489208633093, 0.1510791366906475, 0.15827338129496402, 0.16546762589928057, 0.16546762589928057, 0.17985611510791366, 0.18705035971223022, 0.19424460431654678, 0.20863309352517986, 0.22302158273381295, 0.23741007194244604, 0.2446043165467626, 0.2589928057553957, 0.2949640287769784, 0.3237410071942446, 0.3381294964028777, 0.35251798561151076, 0.3669064748201439, 0.4460431654676259, 0.7194244604316546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mt_ATP-synt_D.gap.json b/pfam_gap_rates/Mt_ATP-synt_D.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8829e5ca11637c911a0a14f61ff1af5d027e858
--- /dev/null
+++ b/pfam_gap_rates/Mt_ATP-synt_D.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mu-like_gpT.gap.json b/pfam_gap_rates/Mu-like_gpT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbe681c30149547c52676c1621a2eed98a8c736a
--- /dev/null
+++ b/pfam_gap_rates/Mu-like_gpT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Myb_DNA-bind_3.gap.json b/pfam_gap_rates/Myb_DNA-bind_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..893a013d98ca35986fed8f17e78ab6034e23dcbc
--- /dev/null
+++ b/pfam_gap_rates/Myb_DNA-bind_3.gap.json
@@ -0,0 +1 @@
+{"family": "Myb_DNA-bind_3", "n_seqs": 1017, "length": 100, "gap_rates": [0.5073746312684366, 0.20648967551622419, 0.20058997050147492, 0.19567354965585054, 0.18584070796460178, 0.1592920353982301, 0.14945919370698132, 0.1455260570304818, 0.13569321533923304, 0.13077679449360866, 0.12684365781710916, 0.12389380530973451, 0.12291052114060963, 0.119960668633235, 0.11701081612586037, 0.11307767944936087, 0.1111111111111111, 0.11701081612586037, 0.1071779744346116, 0.10127826941986234, 0.0943952802359882, 0.08947885939036382, 0.0855457227138643, 0.5575221238938053, 0.43166175024582104, 0.09537856440511308, 0.0855457227138643, 0.08357915437561456, 0.0776794493608653, 0.07177974434611603, 0.07079646017699115, 0.06686332350049164, 0.0688298918387414, 0.05703048180924287, 0.05408062930186824, 0.05408062930186824, 0.0471976401179941, 0.048180924287118974, 0.04228121927236971, 0.038348082595870206, 0.035398230088495575, 0.03343166175024582, 0.03343166175024582, 0.9272369714847591, 0.8289085545722714, 0.03343166175024582, 0.03048180924287119, 0.038348082595870206, 0.03048180924287119, 0.03048180924287119, 0.02753195673549656, 0.02753195673549656, 0.02359882005899705, 0.01966568338249754, 0.01966568338249754, 0.02261553588987217, 0.02261553588987217, 0.024582104228121928, 0.02753195673549656, 0.025565388397246803, 0.024582104228121928, 0.02261553588987217, 0.02359882005899705, 0.025565388397246803, 0.028515240904621434, 0.032448377581120944, 0.03048180924287119, 0.032448377581120944, 0.032448377581120944, 0.0344149459193707, 0.035398230088495575, 0.035398230088495575, 0.03638151425762045, 0.038348082595870206, 0.04523107177974434, 0.0471976401179941, 0.0471976401179941, 0.0471976401179941, 0.8043264503441495, 0.05309734513274336, 0.05604719764011799, 0.0599803343166175, 0.063913470993117, 0.0688298918387414, 0.09931170108161258, 0.08456243854473942, 0.08161258603736479, 0.08357915437561456, 0.08357915437561456, 0.09046214355948869, 0.119960668633235, 0.14257620452310718, 0.9203539823008849, 0.16224188790560473, 0.19665683382497542, 0.2448377581120944, 0.28023598820059, 0.29006882989183874, 0.3215339233038348, 0.711897738446411], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NACHT.gap.json b/pfam_gap_rates/NACHT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3e4de95b867d056063da212e1abdfd97d138748
--- /dev/null
+++ b/pfam_gap_rates/NACHT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NADH-u_ox-rdase.gap.json b/pfam_gap_rates/NADH-u_ox-rdase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07a829d5a6d7fe63f72d4b10d2012812e152c36e
--- /dev/null
+++ b/pfam_gap_rates/NADH-u_ox-rdase.gap.json
@@ -0,0 +1 @@
+{"family": "NADH-u_ox-rdase", "n_seqs": 202, "length": 91, "gap_rates": [0.16831683168316833, 0.08415841584158416, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06435643564356436, 0.054455445544554455, 0.04950495049504951, 0.039603960396039604, 0.039603960396039604, 0.034653465346534656, 0.034653465346534656, 0.034653465346534656, 0.034653465346534656, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.07920792079207921, 0.07920792079207921, 0.6881188118811881, 0.0297029702970297, 0.024752475247524754, 0.024752475247524754, 0.0297029702970297, 0.0297029702970297, 0.024752475247524754, 0.0297029702970297, 0.0297029702970297, 0.024752475247524754, 0.1485148514851485, 0.19306930693069307, 0.07920792079207921, 0.06930693069306931, 0.9356435643564357, 0.04950495049504951, 0.04950495049504951, 0.034653465346534656, 0.08415841584158416, 0.06930693069306931, 0.06930693069306931, 0.04950495049504951, 0.3415841584158416, 0.49504950495049505, 0.900990099009901, 0.9108910891089109, 0.5742574257425742, 0.44554455445544555, 0.3217821782178218, 0.0297029702970297, 0.019801980198019802, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.019801980198019802, 0.01485148514851485, 0.019801980198019802, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.9207920792079208, 0.024752475247524754, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.06435643564356436, 0.019801980198019802, 0.01485148514851485, 0.01485148514851485, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.0297029702970297, 0.0297029702970297, 0.04455445544554455, 0.09405940594059406, 0.3712871287128713], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_1.gap.json b/pfam_gap_rates/NAD_binding_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5df8c23a21f26b6f31a3c66b53440afa1292b53d
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_1.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_binding_1", "n_seqs": 5000, "length": 130, "gap_rates": [0.2326, 0.0812, 0.0236, 0.018, 0.0146, 0.014, 0.0132, 0.0124, 0.012, 0.012, 0.0116, 0.0116, 0.011, 0.011, 0.01, 0.01, 0.0098, 0.0106, 0.0114, 0.0118, 0.0196, 0.9136, 0.5572, 0.1948, 0.8044, 0.9122, 0.9416, 0.8348, 0.7958, 0.1528, 0.037, 0.0188, 0.0128, 0.0084, 0.0048, 0.0048, 0.0046, 0.0046, 0.0054, 0.0048, 0.0052, 0.0064, 0.0078, 0.0084, 0.7848, 0.0074, 0.006, 0.0126, 0.0182, 0.013, 0.0118, 0.0092, 0.0088, 0.01, 0.011, 0.0134, 0.2154, 0.215, 0.1344, 0.1156, 0.0752, 0.0558, 0.9268, 0.9472, 0.8288, 0.337, 0.1634, 0.1214, 0.0618, 0.05, 0.0506, 0.0658, 0.8364, 0.9378, 0.8992, 0.7564, 0.2832, 0.1616, 0.1294, 0.0852, 0.0538, 0.0608, 0.0714, 0.1692, 0.334, 0.2866, 0.2414, 0.1124, 0.0572, 0.045, 0.043, 0.0384, 0.0382, 0.0388, 0.0394, 0.1182, 0.0648, 0.0614, 0.0562, 0.0604, 0.0624, 0.5674, 0.7974, 0.9214, 0.943, 0.907, 0.6356, 0.5304, 0.3948, 0.2532, 0.1, 0.0656, 0.0442, 0.041, 0.0408, 0.0406, 0.0406, 0.0408, 0.0408, 0.041, 0.8552, 0.042, 0.0592, 0.0688, 0.077, 0.088, 0.105, 0.1372, 0.2126, 0.5294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_3.gap.json b/pfam_gap_rates/NAD_binding_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1981197087c41794bef83eaa5f3d2b25b2a39661
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_3.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_binding_3", "n_seqs": 2533, "length": 148, "gap_rates": [0.05013817607579945, 0.04658507698381366, 0.04105803395183577, 0.04066324516383735, 0.03868930122384524, 0.0359257797078563, 0.036320568495854716, 0.037110146071851556, 0.03671535728385314, 0.036320568495854716, 0.0359257797078563, 0.035530990919857876, 0.03316225819186735, 0.03355704697986577, 0.03276746940386893, 0.03197789182787209, 0.03276746940386893, 0.06040268456375839, 0.12554283458349783, 0.23608369522305567, 0.2672720094749309, 0.3576786419265693, 0.3083300434267667, 0.2463482037110146, 0.22660876431109356, 0.1666008685353336, 0.05566521910777734, 0.03434662455586261, 0.030793525463876825, 0.026845637583892617, 0.026845637583892617, 0.024871693643900513, 0.024476904855902093, 0.024476904855902093, 0.024082116067903673, 0.024082116067903673, 0.026056060007895777, 0.6948282668772207, 0.6446900908014213, 0.5811290959336755, 0.22463482037110147, 0.1685748124753257, 0.12435846821950257, 0.049743387287801026, 0.6936439005132254, 0.7070667193051717, 0.7311488353730754, 0.8416896960126332, 0.8847216739044611, 0.9099881563363601, 0.9332806948282669, 0.9455191472562179, 0.9395973154362416, 0.9218318199763127, 0.8973549151204105, 0.8590604026845637, 0.8294512435846821, 0.7121989735491512, 0.6991709435452034, 0.688511646269246, 0.03434662455586261, 0.07777339123568891, 0.06119226213975523, 0.03671535728385314, 0.03276746940386893, 0.026450848795894197, 0.025266482431898933, 0.025661271219897353, 0.022108172127911566, 0.021318594551914725, 0.017765495459928938, 0.018160284247927358, 0.016186340307935254, 0.016581129095933674, 0.016975917883932098, 0.015396762731938412, 0.021713383339913146, 0.01934465061192262, 0.01973943939992104, 0.1760757994472957, 0.10067114093959731, 0.777733912356889, 0.805763916304777, 0.9348598499802606, 0.8353730754046585, 0.800236873272799, 0.7635215159889459, 0.00473746545598105, 0.0027635215159889457, 0.0027635215159889457, 0.0019739439399921043, 0.0019739439399921043, 0.0015791551519936833, 0.0015791551519936833, 0.0015791551519936833, 0.3750493485984998, 0.0011843663639952626, 0.0011843663639952626, 0.0015791551519936833, 0.0007895775759968417, 0.0007895775759968417, 0.0011843663639952626, 0.0015791551519936833, 0.0011843663639952626, 0.0027635215159889457, 0.0019739439399921043, 0.0019739439399921043, 0.002368732727990525, 0.002368732727990525, 0.002368732727990525, 0.002368732727990525, 0.0027635215159889457, 0.024082116067903673, 0.0035530990919857876, 0.0039478878799842085, 0.0043426766679826295, 0.005132254243979471, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.007500986971969996, 0.009080142123963679, 0.01421239636794315, 0.020529016975917885, 0.024082116067903673, 0.7840505329648638, 0.705487564153178, 0.7066719305171734, 0.04066324516383735, 0.03513620213185945, 0.03671535728385314, 0.03868930122384524, 0.03908409001184367, 0.040268456375838924, 0.04342676667982629, 0.049743387287801026, 0.054480852743782074, 0.06040268456375839, 0.06711409395973154, 0.07343071456770628, 0.08803789972364785, 0.09553888669561784, 0.10540860639557836, 0.13304382155546782, 0.1421239636794315, 0.1610738255033557, 0.18910382945124357, 0.29727595736281087], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_5.gap.json b/pfam_gap_rates/NAD_binding_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3a35fc544b31f6bf1dcb9dc1fca1f31b68cfa35
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_7.gap.json b/pfam_gap_rates/NAD_binding_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45ca0e2559decbe717ff238582d1e03b3b61615c
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_7.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_binding_7", "n_seqs": 1322, "length": 149, "gap_rates": [0.41906202723146746, 0.2617246596066566, 0.1422087745839637, 0.10968229954614221, 0.0832072617246596, 0.0680786686838124, 0.0529500756429652, 0.0453857791225416, 0.038577912254160365, 0.03479576399394856, 0.0340393343419062, 0.0340393343419062, 0.031013615733736764, 0.031013615733736764, 0.031013615733736764, 0.031013615733736764, 0.028744326777609682, 0.02798789712556732, 0.0264750378214826, 0.0264750378214826, 0.02723146747352496, 0.0264750378214826, 0.0264750378214826, 0.024962178517397883, 0.025718608169440244, 0.024962178517397883, 0.025718608169440244, 0.025718608169440244, 0.024205748865355523, 0.04236006051437216, 0.9447806354009077, 0.024962178517397883, 0.025718608169440244, 0.0264750378214826, 0.024205748865355523, 0.023449319213313162, 0.0226928895612708, 0.023449319213313162, 0.023449319213313162, 0.023449319213313162, 0.11951588502269289, 0.7866868381240545, 0.8540090771558245, 0.9334341906202723, 0.9394856278366112, 0.8751891074130106, 0.8207261724659607, 0.7549167927382754, 0.1649016641452345, 0.23827534039334342, 0.16036308623298035, 0.12481089258698941, 0.029500756429652043, 0.3630862329803328, 0.4341906202723147, 0.7813918305597579, 0.8577912254160364, 0.9372163388804842, 0.9455370650529501, 0.9069591527987897, 0.8282904689863843, 0.451588502269289, 0.40771558245083206, 0.348714069591528, 0.029500756429652043, 0.048411497730711045, 0.0453857791225416, 0.038577912254160365, 0.8895612708018155, 0.905446293494705, 0.9122541603630863, 0.8993948562783661, 0.8751891074130106, 0.038577912254160365, 0.0416036308623298, 0.040090771558245086, 0.04084720121028744, 0.030257186081694403, 0.9372163388804842, 0.9394856278366112, 0.9440242057488654, 0.9493192133131618, 0.9470499243570348, 0.9394856278366112, 0.9387291981845688, 0.9372163388804842, 0.029500756429652043, 0.9372163388804842, 0.4924357034795764, 0.0416036308623298, 0.745839636913767, 0.0416036308623298, 0.0226928895612708, 0.8857791225416036, 0.9024205748865356, 0.9183055975794251, 0.926626323751891, 0.9394856278366112, 0.9228441754916793, 0.905446293494705, 0.8956127080181543, 0.8736762481089259, 0.019667170953101363, 0.0264750378214826, 0.01588502269288956, 0.943267776096823, 0.012859304084720122, 0.012102874432677761, 0.009077155824508321, 0.007564296520423601, 0.007564296520423601, 0.007564296520423601, 0.009077155824508321, 0.00832072617246596, 0.024962178517397883, 0.012102874432677761, 0.0113464447806354, 0.009833585476550681, 0.01361573373676248, 0.012102874432677761, 0.0113464447806354, 0.01059001512859304, 0.009833585476550681, 0.009833585476550681, 0.01059001512859304, 0.01059001512859304, 0.012102874432677761, 0.012102874432677761, 0.07715582450832073, 0.024962178517397883, 0.019667170953101363, 0.01739788199697428, 0.018154311649016642, 0.019667170953101363, 0.023449319213313162, 0.024205748865355523, 0.024962178517397883, 0.02798789712556732, 0.03555219364599092, 0.040090771558245086, 0.040090771558245086, 0.046142208774583963, 0.046898638426626324, 0.05219364599092285, 0.058245083207261725, 0.07564296520423601, 0.11649016641452345, 0.1664145234493192, 0.26853252647503784], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_9.gap.json b/pfam_gap_rates/NAD_binding_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc77a69539f59e2fc06a237411365060bbadb544
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_synthase.gap.json b/pfam_gap_rates/NAD_synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f57c4017bb1956799cb96c2d76adbeca2720350
--- /dev/null
+++ b/pfam_gap_rates/NAD_synthase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NB-ARC.gap.json b/pfam_gap_rates/NB-ARC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f485c1ba9e3ed05b71576cf964c557c11e61adac
--- /dev/null
+++ b/pfam_gap_rates/NB-ARC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NDUF_B7.gap.json b/pfam_gap_rates/NDUF_B7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ea7d4acc63afaaa6ed44dbd3f61333f16d5154d
--- /dev/null
+++ b/pfam_gap_rates/NDUF_B7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NEMP.gap.json b/pfam_gap_rates/NEMP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e861dc09c1172b66d71ba79c81dbd9c785e4c68b
--- /dev/null
+++ b/pfam_gap_rates/NEMP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NGP1NT.gap.json b/pfam_gap_rates/NGP1NT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8f644d6426d6f0cd66cb9c3e1fd2e91df921697
--- /dev/null
+++ b/pfam_gap_rates/NGP1NT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NIR_SIR.gap.json b/pfam_gap_rates/NIR_SIR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ae4f13b0189d5dedf5b207d7dfac9d76fe40a95
--- /dev/null
+++ b/pfam_gap_rates/NIR_SIR.gap.json
@@ -0,0 +1 @@
+{"family": "NIR_SIR", "n_seqs": 4045, "length": 235, "gap_rates": [0.9033374536464771, 0.565636588380717, 0.44252163164400493, 0.4049443757725587, 0.3453646477132262, 0.2746600741656366, 0.2360939431396786, 0.1950556242274413, 0.14684796044499382, 0.11792336217552533, 0.11273176761433869, 0.11199011124845488, 0.11322620519159456, 0.11149567367119902, 0.10828182941903584, 0.12286773794808406, 0.10457354758961682, 0.10432632880098887, 0.10358467243510507, 0.10259579728059333, 0.10185414091470951, 0.1003708281829419, 0.09987639060568604, 0.09938195302843016, 0.09864029666254635, 0.09814585908529048, 0.09715698393077873, 0.096168108776267, 0.096168108776267, 0.09592088998763906, 0.09641532756489493, 0.09245982694684796, 0.9302843016069221, 0.9377008652657602, 0.9352286773794808, 0.9186650185414091, 0.3908529048207664, 0.37330037082818296, 0.3572311495673671, 0.31940667490729296, 0.10531520395550062, 0.10902348578491966, 0.09493201483312731, 0.096168108776267, 0.09171817058096415, 0.08553770086526576, 0.08479604449938195, 0.08281829419035847, 0.09122373300370828, 0.12014833127317676, 0.10086526576019778, 0.07416563658838071, 0.06279357231149567, 0.029666254635352288, 0.014338689740420272, 0.009394313967861558, 0.009394313967861558, 0.009394313967861558, 0.009641532756489494, 0.018541409147095178, 0.018294190358467244, 0.011866501854140914, 0.012360939431396786, 0.009888751545117428, 0.0103831891223733, 0.010135970333745364, 0.019283065512978988, 0.01903584672435105, 0.010877626699629172, 0.010877626699629172, 0.010630407911001236, 0.009888751545117428, 0.009888751545117428, 0.010135970333745364, 0.009888751545117428, 0.022002472187886278, 0.023733003708281828, 0.025216316440049444, 0.2741656365883807, 0.3100123609394314, 0.28825710754017303, 0.2927070457354759, 0.49048207663782445, 0.7374536464771323, 0.8212608158220025, 0.8672435105067985, 0.8714462299134734, 0.8756489493201484, 0.8773794808405438, 0.8778739184177997, 0.8781211372064277, 0.8783683559950556, 0.8788627935723115, 0.8791100123609394, 0.8796044499381953, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8813349814585909, 0.8820766378244747, 0.8902348578491965, 0.9085290482076638, 0.9241038318912237, 0.9426452410383189, 0.9438813349814585, 0.9498145859085291, 0.9485784919653893, 0.9438813349814585, 0.9391841779975278, 0.9218788627935723, 0.9028430160692212, 0.8820766378244747, 0.8815822002472188, 0.8803461063040791, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8800988875154512, 0.8796044499381953, 0.8791100123609394, 0.8788627935723115, 0.8783683559950556, 0.8778739184177997, 0.8776266996291718, 0.877132262051916, 0.8736711990111249, 0.8709517923362176, 0.8561186650185414, 0.7557478368355995, 0.6746600741656366, 0.08331273176761433, 0.022991347342398022, 0.02249690976514215, 0.0207663782447466, 0.0207663782447466, 0.021013597033374538, 0.021260815822002472, 0.022249690976514216, 0.026205191594561188, 0.030407911001236094, 0.034610630407911, 0.032138442521631644, 0.03634116192830655, 0.0484548825710754, 0.057849196538936956, 0.04276885043263288, 0.04796044499381953, 0.044004944375772556, 0.041779975278121134, 0.04029666254635352, 0.042521631644004944, 0.4803461063040791, 0.7777503090234857, 0.8645241038318913, 0.8843016069221261, 0.8736711990111249, 0.830655129789864, 0.2096415327564895, 0.08949320148331273, 0.0477132262051916, 0.0442521631644005, 0.0449938195302843, 0.04672435105067985, 0.938689740420272, 0.9428924598269468, 0.9419035846724351, 0.9278121137206428, 0.10482076637824475, 0.054388133498145856, 0.05389369592088999, 0.04351050679851669, 0.04351050679851669, 0.04375772558714462, 0.044746600741656366, 0.048207663782447466, 0.05315203955500618, 0.05611866501854141, 0.06279357231149567, 0.06501854140914709, 0.0657601977750309, 0.0677379480840544, 0.6299134734239802, 0.630655129789864, 0.6234857849196539, 0.6017305315203956, 0.10061804697156984, 0.09517923362175525, 0.09839307787391842, 0.09962917181705809, 0.10061804697156984, 0.10210135970333746, 0.103831891223733, 0.10828182941903584, 0.10976514215080346, 0.11347342398022249, 0.11594561186650186, 0.11915945611866502, 0.12360939431396786, 0.12756489493201484, 0.13250927070457355, 0.14981458590852906, 0.9431396786155748, 0.9423980222496909, 0.17750309023485786, 0.19851668726823238, 0.24721878862793573, 0.25784919653893695, 0.26551297898640297, 0.273176761433869, 0.2843016069221261, 0.30284301606922126, 0.32064276885043264, 0.9275648949320149, 0.46971569839307786, 0.5201483312731767, 0.5844252163164401, 0.6479604449938196, 0.7030902348578492, 0.8066749072929542, 0.8887515451174289], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NMO.gap.json b/pfam_gap_rates/NMO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69d034392b117808595b8d4a67ecc23927a078a3
--- /dev/null
+++ b/pfam_gap_rates/NMO.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NQRA_SLBB.gap.json b/pfam_gap_rates/NQRA_SLBB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03be8db07e19f0645fa0c2551e7bd2064262b590
--- /dev/null
+++ b/pfam_gap_rates/NQRA_SLBB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NRDE-2.gap.json b/pfam_gap_rates/NRDE-2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a1f91a988bb7ad4ef86088e036aa58f4fc568dd
--- /dev/null
+++ b/pfam_gap_rates/NRDE-2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NTP_transf_5.gap.json b/pfam_gap_rates/NTP_transf_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ac34182d8e81f5134aea29b5f9c698d64d0849e
--- /dev/null
+++ b/pfam_gap_rates/NTP_transf_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NTP_transferase.gap.json b/pfam_gap_rates/NTP_transferase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8b5ccd5f96fd81005684b61e6d134678a1280e1
--- /dev/null
+++ b/pfam_gap_rates/NTP_transferase.gap.json
@@ -0,0 +1 @@
+{"family": "NTP_transferase", "n_seqs": 5000, "length": 338, "gap_rates": [0.6422, 0.2814, 0.167, 0.1498, 0.1424, 0.1062, 0.097, 0.0928, 0.0906, 0.0888, 0.0852, 0.0826, 0.0752, 0.0754, 0.0974, 0.0938, 0.1042, 0.0814, 0.0724, 0.066, 0.0626, 0.0568, 0.0482, 0.0424, 0.0408, 0.039, 0.0378, 0.0372, 0.0364, 0.0384, 0.6556, 0.9446, 0.844, 0.0344, 0.0292, 0.0296, 0.0292, 0.029, 0.029, 0.0282, 0.0284, 0.0282, 0.028, 0.028, 0.0398, 0.878, 0.0332, 0.029, 0.0284, 0.0276, 0.028, 0.4816, 0.0298, 0.0282, 0.0298, 0.0348, 0.0348, 0.1004, 0.0368, 0.0324, 0.0312, 0.035, 0.0314, 0.0304, 0.031, 0.0302, 0.029, 0.0282, 0.029, 0.0338, 0.032, 0.0566, 0.1778, 0.1578, 0.1348, 0.627, 0.648, 0.6648, 0.7562, 0.8064, 0.8246, 0.8358, 0.8374, 0.8394, 0.8446, 0.9452, 0.8652, 0.8412, 0.8384, 0.837, 0.8326, 0.8154, 0.7684, 0.6978, 0.6568, 0.6372, 0.6142, 0.2088, 0.1678, 0.0788, 0.0554, 0.0498, 0.0498, 0.0488, 0.0484, 0.0498, 0.0518, 0.0502, 0.0278, 0.7702, 0.805, 0.9024, 0.926, 0.9402, 0.9454, 0.9474, 0.944, 0.9314, 0.9132, 0.845, 0.7882, 0.7324, 0.0272, 0.0278, 0.0284, 0.0276, 0.0274, 0.0266, 0.0272, 0.0278, 0.0286, 0.0292, 0.0288, 0.0306, 0.031, 0.0304, 0.0376, 0.0414, 0.061, 0.4694, 0.9354, 0.65, 0.6098, 0.5206, 0.095, 0.0264, 0.0256, 0.0252, 0.0288, 0.0318, 0.0266, 0.0292, 0.0264, 0.029, 0.0276, 0.0426, 0.717, 0.93, 0.6518, 0.0384, 0.0392, 0.0356, 0.0408, 0.0422, 0.0468, 0.0468, 0.0486, 0.0514, 0.0514, 0.0528, 0.0542, 0.0572, 0.063, 0.529, 0.4318, 0.7946, 0.1462, 0.115, 0.0798, 0.0758, 0.0804, 0.0842, 0.0882, 0.0914, 0.0912, 0.096, 0.0982, 0.0992, 0.1042, 0.1074, 0.1096, 0.1116, 0.1116, 0.1114, 0.1114, 0.1124, 0.1126, 0.7564, 0.8266, 0.9212, 0.9396, 0.8788, 0.792, 0.7028, 0.1142, 0.2538, 0.1308, 0.807, 0.9064, 0.8752, 0.7854, 0.1178, 0.1168, 0.1172, 0.1176, 0.1184, 0.1202, 0.1242, 0.1282, 0.1284, 0.1268, 0.1254, 0.1342, 0.136, 0.5066, 0.8584, 0.8996, 0.9052, 0.9496, 0.9458, 0.9018, 0.8756, 0.676, 0.1938, 0.154, 0.1282, 0.1262, 0.126, 0.1256, 0.1252, 0.1426, 0.1282, 0.1268, 0.1262, 0.1262, 0.1266, 0.127, 0.1276, 0.128, 0.129, 0.131, 0.1312, 0.5386, 0.2956, 0.7348, 0.4148, 0.3492, 0.324, 0.2442, 0.218, 0.2304, 0.2016, 0.1958, 0.2004, 0.201, 0.2046, 0.2064, 0.2072, 0.208, 0.209, 0.2102, 0.2104, 0.2122, 0.215, 0.2406, 0.2224, 0.2242, 0.28, 0.2578, 0.24, 0.244, 0.308, 0.275, 0.329, 0.2618, 0.2616, 0.2608, 0.2696, 0.5508, 0.577, 0.8116, 0.8124, 0.8218, 0.8234, 0.8418, 0.8596, 0.8616, 0.8688, 0.8694, 0.8754, 0.8796, 0.8824, 0.8976, 0.9154, 0.9006, 0.8862, 0.882, 0.8768, 0.8702, 0.8688, 0.8618, 0.8616, 0.8578, 0.833, 0.822, 0.814, 0.8122, 0.8102, 0.529, 0.3918, 0.2722, 0.2732, 0.2732, 0.2752, 0.2778, 0.286, 0.2932, 0.2958, 0.299, 0.309, 0.322, 0.3444, 0.393, 0.4638, 0.5214, 0.601, 0.7742, 0.9496], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NTPase_I-T.gap.json b/pfam_gap_rates/NTPase_I-T.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69501857a3f3c2706484a4f3045ff5a89cb43e5c
--- /dev/null
+++ b/pfam_gap_rates/NTPase_I-T.gap.json
@@ -0,0 +1 @@
+{"family": "NTPase_I-T", "n_seqs": 369, "length": 176, "gap_rates": [0.18699186991869918, 0.08130081300813008, 0.07859078590785908, 0.07859078590785908, 0.07588075880758807, 0.07317073170731707, 0.07046070460704607, 0.06775067750677506, 0.06775067750677506, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06233062330623306, 0.06233062330623306, 0.06233062330623306, 0.06233062330623306, 0.10569105691056911, 0.11382113821138211, 0.14634146341463414, 0.15176151761517614, 0.16802168021680217, 0.6449864498644986, 0.943089430894309, 0.5853658536585366, 0.10840108401084012, 0.06504065040650407, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.056910569105691054, 0.05420054200542006, 0.051490514905149054, 0.05420054200542006, 0.051490514905149054, 0.05420054200542006, 0.051490514905149054, 0.051490514905149054, 0.056910569105691054, 0.05420054200542006, 0.051490514905149054, 0.04878048780487805, 0.04878048780487805, 0.14363143631436315, 0.051490514905149054, 0.051490514905149054, 0.04878048780487805, 0.04607046070460705, 0.04607046070460705, 0.04878048780487805, 0.04607046070460705, 0.04607046070460705, 0.04607046070460705, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04607046070460705, 0.04878048780487805, 0.16531165311653118, 0.15989159891598917, 0.4146341463414634, 0.8617886178861789, 0.926829268292683, 0.907859078590786, 0.8536585365853658, 0.05962059620596206, 0.056910569105691054, 0.05420054200542006, 0.05420054200542006, 0.056910569105691054, 0.05420054200542006, 0.05420054200542006, 0.05420054200542006, 0.05420054200542006, 0.051490514905149054, 0.051490514905149054, 0.05962059620596206, 0.08943089430894309, 0.15176151761517614, 0.14905149051490515, 0.14363143631436315, 0.11382113821138211, 0.8048780487804879, 0.9214092140921409, 0.8401084010840109, 0.7181571815718157, 0.06233062330623306, 0.05962059620596206, 0.05962059620596206, 0.05962059620596206, 0.05962059620596206, 0.05962059620596206, 0.05962059620596206, 0.05962059620596206, 0.05962059620596206, 0.06504065040650407, 0.06233062330623306, 0.06504065040650407, 0.8428184281842819, 0.37398373983739835, 0.06504065040650407, 0.05962059620596206, 0.05962059620596206, 0.05962059620596206, 0.06233062330623306, 0.06233062330623306, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06775067750677506, 0.06775067750677506, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.07046070460704607, 0.07317073170731707, 0.07046070460704607, 0.08401084010840108, 0.12466124661246612, 0.8373983739837398, 0.12466124661246612, 0.13550135501355012, 0.14634146341463414, 0.14905149051490515, 0.14905149051490515, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.14363143631436315, 0.14092140921409213, 0.14363143631436315, 0.16260162601626016, 0.15176151761517614, 0.15447154471544716, 0.16260162601626016, 0.15989159891598917, 0.16802168021680217, 0.16802168021680217, 0.17344173441734417, 0.17073170731707318, 0.15989159891598917, 0.16802168021680217, 0.18157181571815717, 0.16260162601626016, 0.16531165311653118, 0.16260162601626016, 0.16260162601626016, 0.15989159891598917, 0.15989159891598917, 0.16260162601626016, 0.16260162601626016, 0.15989159891598917, 0.15989159891598917, 0.15989159891598917, 0.15989159891598917, 0.15989159891598917, 0.15989159891598917, 0.15989159891598917, 0.15989159891598917, 0.15989159891598917, 0.16260162601626016, 0.16531165311653118, 0.1842818428184282, 0.21951219512195122, 0.2791327913279133, 0.3224932249322493, 0.33062330623306235, 0.35772357723577236, 0.36585365853658536, 0.44986449864498645, 0.7289972899728997], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NUC130_3NT.gap.json b/pfam_gap_rates/NUC130_3NT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5186e4f1cfb56619189181f467d84e3b469b3985
--- /dev/null
+++ b/pfam_gap_rates/NUC130_3NT.gap.json
@@ -0,0 +1 @@
+{"family": "NUC130_3NT", "n_seqs": 280, "length": 52, "gap_rates": [0.14285714285714285, 0.03571428571428571, 0.03214285714285714, 0.025, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.017857142857142856, 0.02142857142857143, 0.017857142857142856, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.017857142857142856, 0.014285714285714285, 0.014285714285714285, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0, 0.007142857142857143, 0.007142857142857143, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.010714285714285714, 0.010714285714285714, 0.017857142857142856, 0.02142857142857143, 0.02142857142857143, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.02857142857142857, 0.07857142857142857, 0.17857142857142858], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Na_Ca_ex_C.gap.json b/pfam_gap_rates/Na_Ca_ex_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eadc151c040fe2b0636bfdc286268d5380a0b082
--- /dev/null
+++ b/pfam_gap_rates/Na_Ca_ex_C.gap.json
@@ -0,0 +1 @@
+{"family": "Na_Ca_ex_C", "n_seqs": 140, "length": 152, "gap_rates": [0.2857142857142857, 0.16428571428571428, 0.1357142857142857, 0.12857142857142856, 0.11428571428571428, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.1, 0.1, 0.1, 0.1, 0.1, 0.10714285714285714, 0.1, 0.4714285714285714, 0.1357142857142857, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.16428571428571428, 0.1, 0.10714285714285714, 0.1, 0.09285714285714286, 0.1, 0.8785714285714286, 0.9071428571428571, 0.9071428571428571, 0.9071428571428571, 0.9, 0.8785714285714286, 0.1, 0.12142857142857143, 0.30714285714285716, 0.21428571428571427, 0.17857142857142858, 0.5928571428571429, 0.5142857142857142, 0.14285714285714285, 0.10714285714285714, 0.12142857142857143, 0.16428571428571428, 0.8785714285714286, 0.95, 0.8571428571428571, 0.4357142857142857, 0.38571428571428573, 0.16428571428571428, 0.15714285714285714, 0.24285714285714285, 0.22142857142857142, 0.2, 0.19285714285714287, 0.21428571428571427, 0.18571428571428572, 0.4642857142857143, 0.4928571428571429, 0.6785714285714286, 0.7071428571428572, 0.7714285714285715, 0.9285714285714286, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.9357142857142857, 0.8, 0.7214285714285714, 0.7071428571428572, 0.5071428571428571, 0.4785714285714286, 0.4642857142857143, 0.10714285714285714, 0.1, 0.06428571428571428, 0.05714285714285714, 0.05, 0.05, 0.06428571428571428, 0.07142857142857142, 0.05, 0.05, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.02857142857142857, 0.02857142857142857, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.03571428571428571, 0.02857142857142857, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.02142857142857143, 0.02142857142857143, 0.014285714285714285, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02857142857142857, 0.03571428571428571, 0.03571428571428571, 0.05, 0.05, 0.05, 0.05, 0.05, 0.07142857142857142, 0.09285714285714286, 0.10714285714285714, 0.17857142857142858, 0.37142857142857144, 0.42857142857142855, 0.6], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Na_H_antiport_1.gap.json b/pfam_gap_rates/Na_H_antiport_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0683242763681224f5ab845897ebc58dafb68ec9
--- /dev/null
+++ b/pfam_gap_rates/Na_H_antiport_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NanE.gap.json b/pfam_gap_rates/NanE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cabd9d7a351daf62bf021f94e3fd731555541974
--- /dev/null
+++ b/pfam_gap_rates/NanE.gap.json
@@ -0,0 +1 @@
+{"family": "NanE", "n_seqs": 368, "length": 206, "gap_rates": [0.16576086956521738, 0.07336956521739131, 0.043478260869565216, 0.029891304347826088, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.024456521739130436, 0.024456521739130436, 0.02717391304347826, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.016304347826086956, 0.019021739130434784, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.019021739130434784, 0.024456521739130436, 0.9347826086956522, 0.016304347826086956, 0.019021739130434784, 0.019021739130434784, 0.019021739130434784, 0.019021739130434784, 0.019021739130434784, 0.019021739130434784, 0.021739130434782608, 0.021739130434782608, 0.029891304347826088, 0.06521739130434782, 0.07065217391304347, 0.07880434782608696, 0.11956521739130435, 0.07336956521739131, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.02717391304347826, 0.1956521739130435, 0.1331521739130435, 0.029891304347826088, 0.02717391304347826, 0.02717391304347826, 0.021739130434782608, 0.019021739130434784, 0.019021739130434784, 0.019021739130434784, 0.019021739130434784, 0.019021739130434784, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.4673913043478261, 0.2717391304347826, 0.019021739130434784, 0.021739130434782608, 0.021739130434782608, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.01358695652173913, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.01358695652173913, 0.016304347826086956, 0.6603260869565217, 0.7038043478260869, 0.11141304347826086, 0.016304347826086956, 0.010869565217391304, 0.01358695652173913, 0.016304347826086956, 0.01358695652173913, 0.016304347826086956, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.9483695652173914, 0.01358695652173913, 0.01358695652173913, 0.9184782608695652, 0.016304347826086956, 0.8994565217391305, 0.01358695652173913, 0.8831521739130435, 0.5434782608695652, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.9021739130434783, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.019021739130434784, 0.019021739130434784, 0.021739130434782608, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.024456521739130436, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.03260869565217391, 0.05434782608695652, 0.10054347826086957, 0.17119565217391305, 0.4157608695652174, 0.9157608695652174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nitr_red_bet_C.gap.json b/pfam_gap_rates/Nitr_red_bet_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..383d691e1582a0cef1392fb2b1485626a28e2e3e
--- /dev/null
+++ b/pfam_gap_rates/Nitr_red_bet_C.gap.json
@@ -0,0 +1 @@
+{"family": "Nitr_red_bet_C", "n_seqs": 293, "length": 82, "gap_rates": [0.034129692832764506, 0.034129692832764506, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.023890784982935155, 0.023890784982935155, 0.020477815699658702, 0.030716723549488054, 0.04436860068259386, 0.051194539249146756, 0.4539249146757679, 0.6006825938566553, 0.11604095563139932, 0.13993174061433447, 0.2901023890784983, 0.040955631399317405, 0.030716723549488054, 0.023890784982935155, 0.023890784982935155, 0.010238907849829351, 0.010238907849829351, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0034129692832764505, 0.006825938566552901, 0.010238907849829351, 0.006825938566552901, 0.010238907849829351, 0.010238907849829351, 0.013651877133105802, 0.023890784982935155, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.034129692832764506, 0.034129692832764506, 0.051194539249146756, 0.06143344709897611, 0.07167235494880546, 0.07849829351535836, 0.09897610921501707, 0.6962457337883959], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nse4-Nse3_bdg.gap.json b/pfam_gap_rates/Nse4-Nse3_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..980a124c846de48f3c341d8aa642824773602911
--- /dev/null
+++ b/pfam_gap_rates/Nse4-Nse3_bdg.gap.json
@@ -0,0 +1 @@
+{"family": "Nse4-Nse3_bdg", "n_seqs": 165, "length": 74, "gap_rates": [0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5575757575757576, 0.5212121212121212, 0.006060606060606061, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006060606060606061, 0.006060606060606061, 0.01818181818181818, 0.01818181818181818, 0.030303030303030304, 0.030303030303030304, 0.3393939393939394, 0.3212121212121212, 0.32727272727272727, 0.32727272727272727, 0.6303030303030303, 0.7515151515151515, 0.793939393939394, 0.8181818181818182, 0.8545454545454545, 0.8787878787878788, 0.9030303030303031, 0.9454545454545454, 0.9333333333333333, 0.8848484848484849, 0.8727272727272727, 0.8363636363636363, 0.8121212121212121, 0.7757575757575758, 0.7393939393939394, 0.5757575757575758, 0.23636363636363636, 0.41818181818181815, 0.3575757575757576, 0.2606060606060606, 0.24848484848484848, 0.2545454545454545, 0.2606060606060606, 0.3333333333333333, 0.4727272727272727, 0.6242424242424243, 0.806060606060606], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nse4_C.gap.json b/pfam_gap_rates/Nse4_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71d46550bfecd4c7b7a486564977f759b9856e23
--- /dev/null
+++ b/pfam_gap_rates/Nse4_C.gap.json
@@ -0,0 +1 @@
+{"family": "Nse4_C", "n_seqs": 335, "length": 105, "gap_rates": [0.8029850746268656, 0.22686567164179106, 0.08059701492537313, 0.041791044776119404, 0.03880597014925373, 0.03582089552238806, 0.03283582089552239, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.03582089552238806, 0.029850746268656716, 0.029850746268656716, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.023880597014925373, 0.023880597014925373, 0.020895522388059702, 0.01791044776119403, 0.01791044776119403, 0.014925373134328358, 0.011940298507462687, 0.008955223880597015, 0.008955223880597015, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.008955223880597015, 0.008955223880597015, 0.008955223880597015, 0.11343283582089553, 0.9432835820895522, 0.9492537313432836, 0.9462686567164179, 0.8925373134328358, 0.014925373134328358, 0.03283582089552239, 0.03283582089552239, 0.07761194029850746, 0.03582089552238806, 0.03283582089552239, 0.8507462686567164, 0.8895522388059701, 0.9134328358208955, 0.9373134328358209, 0.9462686567164179, 0.9164179104477612, 0.8955223880597015, 0.8597014925373134, 0.8477611940298507, 0.07164179104477612, 0.21492537313432836, 0.14626865671641792, 0.11641791044776119, 0.11044776119402985, 0.10149253731343283, 0.10149253731343283, 0.11940298507462686, 0.09850746268656717, 0.09850746268656717, 0.10746268656716418, 0.10149253731343283, 0.11343283582089553, 0.8477611940298507, 0.20597014925373133, 0.07761194029850746, 0.0626865671641791, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.050746268656716415, 0.06865671641791045, 0.08059701492537313, 0.10746268656716418, 0.11343283582089553, 0.1373134328358209, 0.14925373134328357, 0.16417910447761194, 0.18507462686567164, 0.20298507462686566, 0.2298507462686567, 0.23880597014925373, 0.24477611940298508, 0.25671641791044775, 0.34626865671641793, 0.6328358208955224], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nuc_deoxyrib_tr.gap.json b/pfam_gap_rates/Nuc_deoxyrib_tr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3791ef68f8cda24cda8dae567d6e59f77d7c1335
--- /dev/null
+++ b/pfam_gap_rates/Nuc_deoxyrib_tr.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nuc_sug_transp.gap.json b/pfam_gap_rates/Nuc_sug_transp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1279e55713fbdccf3cd06183e09848d47466ce5
--- /dev/null
+++ b/pfam_gap_rates/Nuc_sug_transp.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nup160.gap.json b/pfam_gap_rates/Nup160.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa0aa6f789fcc4f3e5575dade2edfd2b3cb5683a
--- /dev/null
+++ b/pfam_gap_rates/Nup160.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OAS1_C.gap.json b/pfam_gap_rates/OAS1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f568dae63235362f87f8cfc5f75999f8ab98aa4
--- /dev/null
+++ b/pfam_gap_rates/OAS1_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OGG_N.gap.json b/pfam_gap_rates/OGG_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e488140c88d3a3d5a98046ea0055d25ab806d69
--- /dev/null
+++ b/pfam_gap_rates/OGG_N.gap.json
@@ -0,0 +1 @@
+{"family": "OGG_N", "n_seqs": 586, "length": 165, "gap_rates": [0.8856655290102389, 0.658703071672355, 0.5921501706484642, 0.5238907849829352, 0.4453924914675768, 0.363481228668942, 0.26791808873720135, 0.21331058020477817, 0.14675767918088736, 0.1416382252559727, 0.13822525597269625, 0.1416382252559727, 0.1416382252559727, 0.13651877133105803, 0.13651877133105803, 0.13651877133105803, 0.1348122866894198, 0.13310580204778158, 0.12627986348122866, 0.12457337883959044, 0.12286689419795221, 0.11774744027303755, 0.11262798634812286, 0.11092150170648464, 0.9197952218430034, 0.9232081911262798, 0.9334470989761092, 0.9368600682593856, 0.947098976109215, 0.9436860068259386, 0.9334470989761092, 0.931740614334471, 0.9215017064846417, 0.9197952218430034, 0.10921501706484642, 0.12798634812286688, 0.13139931740614336, 0.1296928327645051, 0.11433447098976109, 0.9163822525597269, 0.9385665529010239, 0.909556313993174, 0.2764505119453925, 0.9112627986348123, 0.10238907849829351, 0.09726962457337884, 0.09556313993174062, 0.09556313993174062, 0.09215017064846416, 0.09385665529010238, 0.08532423208191127, 0.08020477815699659, 0.07508532423208192, 0.07337883959044368, 0.07337883959044368, 0.06996587030716724, 0.06996587030716724, 0.09044368600682594, 0.07849829351535836, 0.07337883959044368, 0.947098976109215, 0.06655290102389079, 0.06996587030716724, 0.07167235494880546, 0.07337883959044368, 0.07508532423208192, 0.07337883959044368, 0.07167235494880546, 0.07337883959044368, 0.08703071672354949, 0.6569965870307167, 0.7235494880546075, 0.757679180887372, 0.7320819112627986, 0.8208191126279863, 0.8327645051194539, 0.8549488054607508, 0.8771331058020477, 0.8907849829351536, 0.9078498293515358, 0.9266211604095563, 0.931740614334471, 0.9351535836177475, 0.9402730375426621, 0.9436860068259386, 0.9488054607508533, 0.947098976109215, 0.9419795221843004, 0.9385665529010239, 0.9334470989761092, 0.9283276450511946, 0.9232081911262798, 0.9010238907849829, 0.8890784982935154, 0.8686006825938567, 0.8430034129692833, 0.8293515358361775, 0.8139931740614335, 0.6843003412969283, 0.643344709897611, 0.6040955631399317, 0.5597269624573379, 0.5068259385665529, 0.4641638225255973, 0.43686006825938567, 0.40955631399317405, 0.38054607508532423, 0.1552901023890785, 0.08873720136518772, 0.05802047781569966, 0.04948805460750853, 0.023890784982935155, 0.020477815699658702, 0.01877133105802048, 0.015358361774744027, 0.013651877133105802, 0.013651877133105802, 0.013651877133105802, 0.013651877133105802, 0.011945392491467578, 0.010238907849829351, 0.008532423208191127, 0.008532423208191127, 0.010238907849829351, 0.010238907849829351, 0.011945392491467578, 0.013651877133105802, 0.01877133105802048, 0.017064846416382253, 0.10409556313993173, 0.017064846416382253, 0.02218430034129693, 0.01877133105802048, 0.02901023890784983, 0.22013651877133106, 0.034129692832764506, 0.025597269624573378, 0.02901023890784983, 0.023890784982935155, 0.02218430034129693, 0.9266211604095563, 0.9402730375426621, 0.9334470989761092, 0.9232081911262798, 0.02218430034129693, 0.025597269624573378, 0.025597269624573378, 0.03754266211604096, 0.03583617747440273, 0.032423208191126277, 0.023890784982935155, 0.023890784982935155, 0.023890784982935155, 0.023890784982935155, 0.023890784982935155, 0.931740614334471, 0.023890784982935155, 0.025597269624573378, 0.025597269624573378, 0.025597269624573378, 0.025597269624573378, 0.025597269624573378, 0.02901023890784983, 0.034129692832764506, 0.2627986348122867], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OKR_DC_1.gap.json b/pfam_gap_rates/OKR_DC_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fad44dc7328b5396d9f2a087ae29557b9f899a87
--- /dev/null
+++ b/pfam_gap_rates/OKR_DC_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Orai-1.gap.json b/pfam_gap_rates/Orai-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..330a0abf33b9c7b07860649d497e9e4807586760
--- /dev/null
+++ b/pfam_gap_rates/Orai-1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OrfB_Zn_ribbon.gap.json b/pfam_gap_rates/OrfB_Zn_ribbon.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8c99c5055d17c91d9c33b54559d45f042685a5e
--- /dev/null
+++ b/pfam_gap_rates/OrfB_Zn_ribbon.gap.json
@@ -0,0 +1 @@
+{"family": "OrfB_Zn_ribbon", "n_seqs": 3089, "length": 80, "gap_rates": [0.2618970540628035, 0.2113952735513111, 0.1595985755908061, 0.12657818064098414, 0.09938491421171901, 0.07542894140498543, 0.06442214308837811, 0.05762382648106183, 0.05406280349627711, 0.05179669796050502, 0.051149239235998706, 0.048235674975720295, 0.04402719326642927, 0.04758821625121398, 0.045969569439948205, 0.04370346390417611, 0.03463904176108773, 0.03107801877630301, 0.021689867270961477, 0.019423761735189383, 0.01877630301068307, 0.015862738750404663, 0.015215280025898349, 0.01424409193913888, 0.013272903852379411, 0.013596633214632567, 0.6309485270314017, 0.01165425704111363, 0.011330527678860473, 0.011330527678860473, 0.012625445127873098, 0.01165425704111363, 0.015215280025898349, 0.017481385561670445, 0.01165425704111363, 0.011006798316607317, 0.012301715765619942, 0.011977986403366786, 0.012625445127873098, 0.013920362576885724, 0.013920362576885724, 0.7636775655551958, 0.8808675946908384, 0.912916801553901, 0.9417287147944319, 0.9485270314017481, 0.933635480738103, 0.9054710262220783, 0.8786014891550664, 0.3787633538361929, 0.12398834574295889, 0.07898996438977016, 0.02330851408222726, 0.021689867270961477, 0.01424409193913888, 0.015215280025898349, 0.015539009388151505, 0.01618646811265782, 0.016510197474910976, 0.02136613790870832, 0.17384266752994496, 0.9491744901262544, 0.027193266429265135, 0.027193266429265135, 0.029783101327290385, 0.03140174813855617, 0.03010683068954354, 0.03010683068954354, 0.030430560051796698, 0.03140174813855617, 0.03302039494982195, 0.03658141793460667, 0.038847523470378766, 0.04435092262868242, 0.060861120103593395, 0.07866623502751699, 0.08870184525736484, 0.13855616704435092, 0.3955972806733571, 0.7529944966008417], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oscp1.gap.json b/pfam_gap_rates/Oscp1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d757259508611bdd0b96871ef43d3157d45e7228
--- /dev/null
+++ b/pfam_gap_rates/Oscp1.gap.json
@@ -0,0 +1 @@
+{"family": "Oscp1", "n_seqs": 108, "length": 181, "gap_rates": [0.16666666666666666, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.12962962962962962, 0.12962962962962962, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.12037037037037036, 0.10185185185185185, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.06481481481481481, 0.05555555555555555, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.05555555555555555, 0.05555555555555555, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.027777777777777776, 0.027777777777777776, 0.06481481481481481, 0.037037037037037035, 0.037037037037037035, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.046296296296296294, 0.5277777777777778, 0.5277777777777778, 0.10185185185185185, 0.12962962962962962, 0.2777777777777778, 0.4444444444444444, 0.3425925925925926, 0.24074074074074073, 0.06481481481481481, 0.046296296296296294, 0.046296296296296294, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.07407407407407407, 0.10185185185185185, 0.1111111111111111, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12962962962962962, 0.1388888888888889, 0.14814814814814814, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.16666666666666666, 0.17592592592592593, 0.18518518518518517, 0.18518518518518517, 0.18518518518518517, 0.19444444444444445, 0.18518518518518517, 0.19444444444444445, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.21296296296296297, 0.6296296296296297], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PA26.gap.json b/pfam_gap_rates/PA26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fea81e17fd89699f5b085a551e85857947a0e4e
--- /dev/null
+++ b/pfam_gap_rates/PA26.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PAD.gap.json b/pfam_gap_rates/PAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f291f7a60ac0c978304782f80ff6f5eb3db53779
--- /dev/null
+++ b/pfam_gap_rates/PAD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PAN_1.gap.json b/pfam_gap_rates/PAN_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..770441d48e902e444c60ca36e486ef51d2bae4ab
--- /dev/null
+++ b/pfam_gap_rates/PAN_1.gap.json
@@ -0,0 +1 @@
+{"family": "PAN_1", "n_seqs": 2109, "length": 100, "gap_rates": [0.838311996206733, 0.7871028923660502, 0.5742057847321005, 0.5329540066382171, 0.4969179706021811, 0.4423897581792319, 0.3940256045519203, 0.35135135135135137, 0.32242769084874345, 0.2982456140350877, 0.2773826458036984, 0.2631578947368421, 0.24940730203888098, 0.9492650545282124, 0.9099099099099099, 0.22048364153627312, 0.2029397818871503, 0.18349928876244664, 0.15836889521100048, 0.13703176861071598, 0.11759127548601232, 0.6031294452347084, 0.08392603129445235, 0.0649596965386439, 0.2802275960170697, 0.02418207681365576, 0.013276434329065908, 0.008534850640113799, 0.004267425320056899, 0.003319108582266477, 0.002844950213371266, 0.002370791844476055, 0.001896633475580844, 0.001896633475580844, 0.001896633475580844, 0.001896633475580844, 0.003793266951161688, 0.004267425320056899, 0.029871977240398292, 0.5220483641536273, 0.8373636794689426, 0.9193930772878142, 0.9416785206258891, 0.8620199146514936, 0.8231389284020862, 0.46846846846846846, 0.000474158368895211, 0.000474158368895211, 0.003319108582266477, 0.003319108582266477, 0.004267425320056899, 0.006638217164532954, 0.006638217164532954, 0.006164058795637743, 0.007112375533428165, 0.8259838786154575, 0.8828828828828829, 0.9331436699857752, 0.9421526789947843, 0.9151256519677572, 0.8691322901849218, 0.7984826932195354, 0.07871028923660503, 0.05215742057847321, 0.00948316737790422, 0.00948316737790422, 0.010431484115694643, 0.010905642484589853, 0.012802275960170697, 0.03366524419155998, 0.051209103840682786, 0.08060692271218586, 0.09577999051683263, 0.12328117591275486, 0.1427216690374585, 0.5405405405405406, 0.89900426742532, 0.9331436699857752, 0.8487434803224277, 0.42342342342342343, 0.3736367946894263, 0.3589378852536747, 0.361782835467046, 0.3764817449027975, 0.38975817923186346, 0.6510194404931247, 0.9174964438122333, 0.8013276434329066, 0.4547178757705074, 0.43717401612138457, 0.431484115694642, 0.4400189663347558, 0.4466571834992888, 0.4523470839260313, 0.4665718349928876, 0.5002370791844476, 0.5362731152204836, 0.923660502607871, 0.6348980559506875, 0.6477003319108582], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PARG_cat.gap.json b/pfam_gap_rates/PARG_cat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18d65e341b8bf7cbd63bf70dae1135fd2f88f4c1
--- /dev/null
+++ b/pfam_gap_rates/PARG_cat.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PATR.gap.json b/pfam_gap_rates/PATR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a20751aaf1043f6a0080ad4090b15d47f89d3c0f
--- /dev/null
+++ b/pfam_gap_rates/PATR.gap.json
@@ -0,0 +1 @@
+{"family": "PATR", "n_seqs": 1770, "length": 31, "gap_rates": [0.3096045197740113, 0.19661016949152543, 0.13785310734463277, 0.1096045197740113, 0.08813559322033898, 0.04971751412429379, 0.023163841807909605, 0.01751412429378531, 0.014689265536723164, 0.005649717514124294, 0.0022598870056497176, 0.0096045197740113, 0.01638418079096045, 0.8627118644067797, 0.005649717514124294, 0.002824858757062147, 0.007909604519774011, 0.006779661016949152, 0.005084745762711864, 0.0022598870056497176, 0.024858757062146894, 0.004519774011299435, 0.0062146892655367235, 0.007909604519774011, 0.011864406779661017, 0.01694915254237288, 0.02768361581920904, 0.06384180790960452, 0.09322033898305085, 0.19830508474576272, 0.40225988700564974], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PBP_GOBP.gap.json b/pfam_gap_rates/PBP_GOBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33a72a1d6ee12fbff4a2b7ad81466dfbada94967
--- /dev/null
+++ b/pfam_gap_rates/PBP_GOBP.gap.json
@@ -0,0 +1 @@
+{"family": "PBP_GOBP", "n_seqs": 688, "length": 128, "gap_rates": [0.9098837209302325, 0.8357558139534884, 0.7412790697674418, 0.6773255813953488, 0.6061046511627907, 0.5537790697674418, 0.49709302325581395, 0.4331395348837209, 0.38372093023255816, 0.34156976744186046, 0.30377906976744184, 0.2616279069767442, 0.21656976744186046, 0.18604651162790697, 0.1613372093023256, 0.1438953488372093, 0.12936046511627908, 0.12063953488372094, 0.13226744186046513, 0.13226744186046513, 0.1308139534883721, 0.12936046511627908, 0.11482558139534883, 0.11482558139534883, 0.11046511627906977, 0.10755813953488372, 0.10174418604651163, 0.10319767441860465, 0.11627906976744186, 0.10610465116279069, 0.10174418604651163, 0.09447674418604651, 0.08430232558139535, 0.08139534883720931, 0.9156976744186046, 0.9244186046511628, 0.8546511627906976, 0.11046511627906977, 0.125, 0.1002906976744186, 0.0755813953488372, 0.05377906976744186, 0.05377906976744186, 0.0436046511627907, 0.029069767441860465, 0.030523255813953487, 0.7151162790697675, 0.02180232558139535, 0.01744186046511628, 0.01744186046511628, 0.015988372093023256, 0.015988372093023256, 0.015988372093023256, 0.01744186046511628, 0.015988372093023256, 0.015988372093023256, 0.015988372093023256, 0.01308139534883721, 0.011627906976744186, 0.010174418604651164, 0.005813953488372093, 0.13953488372093023, 0.023255813953488372, 0.02616279069767442, 0.05377906976744186, 0.01308139534883721, 0.014534883720930232, 0.015988372093023256, 0.014534883720930232, 0.015988372093023256, 0.014534883720930232, 0.014534883720930232, 0.015988372093023256, 0.01744186046511628, 0.02180232558139535, 0.020348837209302327, 0.020348837209302327, 0.023255813953488372, 0.030523255813953487, 0.03343023255813953, 0.03924418604651163, 0.622093023255814, 0.8473837209302325, 0.9287790697674418, 0.7281976744186046, 0.5726744186046512, 0.4811046511627907, 0.28488372093023256, 0.11337209302325581, 0.0625, 0.05232558139534884, 0.036337209302325583, 0.030523255813953487, 0.027616279069767442, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.8052325581395349, 0.9302325581395349, 0.8691860465116279, 0.7281976744186046, 0.48546511627906974, 0.42005813953488375, 0.16424418604651161, 0.09011627906976744, 0.07703488372093023, 0.07267441860465117, 0.09447674418604651, 0.1002906976744186, 0.07412790697674419, 0.9258720930232558, 0.8662790697674418, 0.07267441860465117, 0.07267441860465117, 0.0755813953488372, 0.0872093023255814, 0.09302325581395349, 0.10174418604651163, 0.10465116279069768, 0.10610465116279069, 0.11337209302325581, 0.12354651162790697, 0.12790697674418605, 0.14534883720930233, 0.2180232558139535, 0.39825581395348836, 0.8561046511627907], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PC_rep.gap.json b/pfam_gap_rates/PC_rep.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6c7ca78a33c23115beeda3c3a7db0d02cd9eac1
--- /dev/null
+++ b/pfam_gap_rates/PC_rep.gap.json
@@ -0,0 +1 @@
+{"family": "PC_rep", "n_seqs": 1169, "length": 36, "gap_rates": [0.10778443113772455, 0.06159110350727117, 0.05645851154833191, 0.0025662959794696323, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0051325919589392645, 0.0, 0.0, 0.000855431993156544, 0.9127459366980325, 0.9067579127459366, 0.17621899059024806, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0025662959794696323, 0.003421727972626176, 0.003421727972626176, 0.010265183917878529, 0.023952095808383235, 0.04362703165098375, 0.07698887938408897, 0.174508126603935, 0.22583404619332764, 0.2745936698032506, 0.3481608212147134, 0.5431993156544055], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PDDEXK_1.gap.json b/pfam_gap_rates/PDDEXK_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4b1b189fc2d2660fc8956747cbadb46c7a6e0fb2
--- /dev/null
+++ b/pfam_gap_rates/PDDEXK_1.gap.json
@@ -0,0 +1 @@
+{"family": "PDDEXK_1", "n_seqs": 4357, "length": 411, "gap_rates": [0.803305026394308, 0.5368372733532247, 0.47854028000918064, 0.46385127381225616, 0.4544411292173514, 0.451916456277255, 0.4466375946752352, 0.4429653431260041, 0.43699793435850354, 0.4347027771402341, 0.4275877897635988, 0.42575166398898323, 0.42483360110167545, 0.42276795960523295, 0.4216203809960982, 0.4195547394996557, 0.4179481294468671, 0.41565297222859765, 0.41358733073215515, 0.42070231810879044, 0.4168005508377324, 0.41106265779205875, 0.4046362175809043, 0.39476704154234565, 0.3904062428276337, 0.8425522148267156, 0.803305026394308, 0.4062428276336929, 0.37640578379619005, 0.7652054165710351, 0.8510442965343126, 0.8228138627495983, 0.7259582281386275, 0.31351847601560706, 0.2825338535689695, 0.26187743860454443, 0.24695891668579298, 0.2338765205416571, 0.22630250172136793, 0.37273353224695893, 0.8886848749139316, 0.16892357126463162, 0.15652972228597659, 0.14115216892357127, 0.14000459031443654, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PDEase_II.gap.json b/pfam_gap_rates/PDEase_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e135c317beb3670946e0ceda9daa15010935c26
--- /dev/null
+++ b/pfam_gap_rates/PDEase_II.gap.json
@@ -0,0 +1 @@
+{"family": "PDEase_II", "n_seqs": 225, "length": 430, "gap_rates": [0.8711111111111111, 0.8, 0.7822222222222223, 0.7688888888888888, 0.76, 0.7422222222222222, 0.7422222222222222, 0.7422222222222222, 0.7333333333333333, 0.7333333333333333, 0.7333333333333333, 0.7333333333333333, 0.7333333333333333, 0.7333333333333333, 0.7333333333333333, 0.7288888888888889, 0.7288888888888889, 0.7288888888888889, 0.7288888888888889, 0.7244444444444444, 0.7244444444444444, 0.72, 0.72, 0.7022222222222222, 0.6933333333333334, 0.6844444444444444, 0.6755555555555556, 0.6711111111111111, 0.6711111111111111, 0.6711111111111111, 0.6666666666666666, 0.6666666666666666, 0.6666666666666666, 0.6666666666666666, 0.6666666666666666, 0.6622222222222223, 0.6622222222222223, 0.6622222222222223, 0.6622222222222223, 0.6622222222222223, 0.6622222222222223, 0.8622222222222222, 0.7422222222222222, 0.6977777777777778, 0.7022222222222222, 0.6844444444444444, 0.68, 0.6622222222222223, 0.6533333333333333, 0.6577777777777778, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PDZ.gap.json b/pfam_gap_rates/PDZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9bd3d7deacd4ca34cae377b648f0bfdd27f03cf2
--- /dev/null
+++ b/pfam_gap_rates/PDZ.gap.json
@@ -0,0 +1 @@
+{"family": "PDZ", "n_seqs": 5000, "length": 93, "gap_rates": [0.6708, 0.5394, 0.4458, 0.3954, 0.3418, 0.6034, 0.89, 0.2054, 0.1802, 0.1468, 0.123, 0.1078, 0.1002, 0.0978, 0.095, 0.0932, 0.0916, 0.1032, 0.137, 0.143, 0.1382, 0.241, 0.4054, 0.7666, 0.8614, 0.9216, 0.9364, 0.8984, 0.8118, 0.6832, 0.552, 0.4784, 0.237, 0.0326, 0.024, 0.0194, 0.017, 0.0158, 0.0136, 0.011, 0.01, 0.0096, 0.0112, 0.9302, 0.0096, 0.0048, 0.0032, 0.0032, 0.0022, 0.0018, 0.067, 0.4324, 0.0014, 0.0012, 0.0008, 0.0008, 0.0012, 0.001, 0.001, 0.0012, 0.0016, 0.0042, 0.0064, 0.0066, 0.0086, 0.009, 0.0098, 0.0134, 0.017, 0.0198, 0.047, 0.0434, 0.038, 0.0402, 0.043, 0.0478, 0.0518, 0.0576, 0.061, 0.0708, 0.0852, 0.1064, 0.1508, 0.22, 0.9194, 0.785, 0.1904, 0.2036, 0.2254, 0.237, 0.2872, 0.3728, 0.8502], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEX-1N.gap.json b/pfam_gap_rates/PEX-1N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9490a0d64fcf4288906afa46d3d08aacdc761493
--- /dev/null
+++ b/pfam_gap_rates/PEX-1N.gap.json
@@ -0,0 +1 @@
+{"family": "PEX-1N", "n_seqs": 249, "length": 100, "gap_rates": [0.6144578313253012, 0.1927710843373494, 0.08032128514056225, 0.07228915662650602, 0.05220883534136546, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.03614457831325301, 0.0321285140562249, 0.01606425702811245, 0.01606425702811245, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.008032128514056224, 0.008032128514056224, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.008032128514056224, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.7630522088353414, 0.7670682730923695, 0.7911646586345381, 0.7991967871485943, 0.8032128514056225, 0.8473895582329317, 0.9357429718875502, 0.8192771084337349, 0.7991967871485943, 0.7911646586345381, 0.7670682730923695, 0.7630522088353414, 0.7630522088353414, 0.01606425702811245, 0.012048192771084338, 0.008032128514056224, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.08433734939759036, 0.012048192771084338, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.012048192771084338, 0.0321285140562249, 0.04819277108433735, 0.04417670682730924, 0.04819277108433735, 0.570281124497992, 0.8835341365461847, 0.9236947791164659, 0.9317269076305221, 0.9477911646586346, 0.9437751004016064, 0.927710843373494, 0.8875502008032129, 0.6224899598393574, 0.4859437751004016, 0.37349397590361444, 0.08032128514056225, 0.040160642570281124, 0.04417670682730924, 0.04417670682730924, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.05220883534136546, 0.05220883534136546, 0.05622489959839357, 0.05622489959839357, 0.060240963855421686, 0.060240963855421686, 0.09236947791164658, 0.17269076305220885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PGA_cap.gap.json b/pfam_gap_rates/PGA_cap.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d032278bd04dd91e5f8026433050f2b9921b208
--- /dev/null
+++ b/pfam_gap_rates/PGA_cap.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PHA_synth_III_E.gap.json b/pfam_gap_rates/PHA_synth_III_E.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14043eb5fb58b13cbb74cbe68b01cca4045c298a
--- /dev/null
+++ b/pfam_gap_rates/PHA_synth_III_E.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PHB_acc_N.gap.json b/pfam_gap_rates/PHB_acc_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccd23da739418b159574dedf0d50a0f6bcc7eb2b
--- /dev/null
+++ b/pfam_gap_rates/PHB_acc_N.gap.json
@@ -0,0 +1 @@
+{"family": "PHB_acc_N", "n_seqs": 379, "length": 61, "gap_rates": [0.052770448548812667, 0.013192612137203167, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.010554089709762533, 0.005277044854881266, 0.005277044854881266, 0.005277044854881266, 0.005277044854881266, 0.005277044854881266, 0.002638522427440633, 0.002638522427440633, 0.002638522427440633, 0.002638522427440633, 0.002638522427440633, 0.002638522427440633, 0.002638522427440633, 0.002638522427440633, 0.002638522427440633, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005277044854881266, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002638522427440633, 0.002638522427440633, 0.010554089709762533, 0.018469656992084433, 0.026385224274406333, 0.052770448548812667, 0.14775725593667546, 0.9129287598944591], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PID_2.gap.json b/pfam_gap_rates/PID_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c3ada69a63a805aa694820bdb9aafcd3a6bdc92
--- /dev/null
+++ b/pfam_gap_rates/PID_2.gap.json
@@ -0,0 +1 @@
+{"family": "PID_2", "n_seqs": 146, "length": 200, "gap_rates": [0.5958904109589042, 0.363013698630137, 0.2671232876712329, 0.2328767123287671, 0.22602739726027396, 0.22602739726027396, 0.22602739726027396, 0.2191780821917808, 0.2191780821917808, 0.2191780821917808, 0.22602739726027396, 0.2191780821917808, 0.2191780821917808, 0.2191780821917808, 0.22602739726027396, 0.2054794520547945, 0.8835616438356164, 0.1917808219178082, 0.18493150684931506, 0.1780821917808219, 0.15753424657534246, 0.1643835616438356, 0.1506849315068493, 0.1506849315068493, 0.1506849315068493, 0.15753424657534246, 0.17123287671232876, 0.15753424657534246, 0.15753424657534246, 0.15753424657534246, 0.15753424657534246, 0.15753424657534246, 0.15753424657534246, 0.15753424657534246, 0.1506849315068493, 0.14383561643835616, 0.7671232876712328, 0.15753424657534246, 0.815068493150685, 0.19863013698630136, 0.1506849315068493, 0.136986301369863, 0.863013698630137, 0.8698630136986302, 0.863013698630137, 0.136986301369863, 0.1095890410958904, 0.1095890410958904, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.1095890410958904, 0.11643835616438356, 0.11643835616438356, 0.11643835616438356, 0.11643835616438356, 0.11643835616438356, 0.1232876712328767, 0.11643835616438356, 0.11643835616438356, 0.1232876712328767, 0.11643835616438356, 0.5616438356164384, 0.6438356164383562, 0.821917808219178, 0.726027397260274, 0.6164383561643836, 0.547945205479452, 0.11643835616438356, 0.11643835616438356, 0.11643835616438356, 0.10273972602739725, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.10273972602739725, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.8561643835616438, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.0958904109589041, 0.0958904109589041, 0.08904109589041095, 0.10273972602739725, 0.13013698630136986, 0.1506849315068493, 0.18493150684931506, 0.17123287671232876, 0.1780821917808219, 0.17123287671232876, 0.1506849315068493, 0.1232876712328767, 0.1095890410958904, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.11643835616438356, 0.11643835616438356, 0.11643835616438356, 0.11643835616438356, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.11643835616438356, 0.11643835616438356, 0.11643835616438356, 0.1232876712328767, 0.1232876712328767, 0.1232876712328767, 0.1232876712328767, 0.11643835616438356, 0.1232876712328767, 0.11643835616438356, 0.11643835616438356, 0.11643835616438356, 0.1232876712328767, 0.1232876712328767, 0.13013698630136986, 0.14383561643835616, 0.14383561643835616, 0.14383561643835616, 0.1506849315068493, 0.15753424657534246, 0.821917808219178, 0.8561643835616438, 0.8356164383561644, 0.7945205479452054, 0.21232876712328766, 0.2191780821917808, 0.2191780821917808, 0.2671232876712329, 0.3561643835616438, 0.363013698630137, 0.4863013698630137, 0.541095890410959, 0.4931506849315068, 0.5753424657534246, 0.5, 0.4520547945205479, 0.4452054794520548, 0.4041095890410959, 0.3972602739726027, 0.3972602739726027, 0.410958904109589, 0.3972602739726027, 0.3972602739726027, 0.4041095890410959, 0.410958904109589, 0.4246575342465753, 0.4246575342465753, 0.4246575342465753, 0.6643835616438356, 0.5753424657534246, 0.4589041095890411, 0.4520547945205479, 0.4520547945205479, 0.4520547945205479, 0.4520547945205479, 0.4520547945205479, 0.4520547945205479, 0.4589041095890411, 0.4589041095890411, 0.4589041095890411, 0.4589041095890411, 0.4589041095890411, 0.4589041095890411, 0.4589041095890411, 0.4589041095890411, 0.4589041095890411, 0.4589041095890411, 0.4657534246575342, 0.4657534246575342, 0.4657534246575342, 0.4657534246575342, 0.4657534246575342, 0.4657534246575342, 0.4657534246575342, 0.636986301369863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PIG-H.gap.json b/pfam_gap_rates/PIG-H.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..102fe85ba00cef26e1210b156f1ae6fcf8df4dc2
--- /dev/null
+++ b/pfam_gap_rates/PIG-H.gap.json
@@ -0,0 +1 @@
+{"family": "PIG-H", "n_seqs": 212, "length": 85, "gap_rates": [0.1792452830188679, 0.07547169811320754, 0.07075471698113207, 0.07075471698113207, 0.04716981132075472, 0.03773584905660377, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.02358490566037736, 0.8915094339622641, 0.9339622641509434, 0.9433962264150944, 0.9481132075471698, 0.9386792452830188, 0.8915094339622641, 0.8820754716981132, 0.8679245283018868, 0.8915094339622641, 0.9245283018867925, 0.7924528301886793, 0.7594339622641509, 0.6273584905660378, 0.5283018867924528, 0.08018867924528301, 0.05188679245283019, 0.9481132075471698, 0.04716981132075472, 0.02358490566037736, 0.014150943396226415, 0.0047169811320754715, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0047169811320754715, 0.0047169811320754715, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.014150943396226415, 0.018867924528301886, 0.018867924528301886, 0.02358490566037736, 0.02358490566037736, 0.0330188679245283, 0.08490566037735849, 0.8207547169811321, 0.8443396226415094, 0.8349056603773585, 0.7830188679245284, 0.11320754716981132, 0.7547169811320755, 0.7452830188679245, 0.12735849056603774, 0.12264150943396226, 0.1320754716981132, 0.1320754716981132, 0.15566037735849056, 0.3113207547169811], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PIGA.gap.json b/pfam_gap_rates/PIGA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f7e950fb3ec27e39a3348711d1cd68f3f8678ca
--- /dev/null
+++ b/pfam_gap_rates/PIGA.gap.json
@@ -0,0 +1 @@
+{"family": "PIGA", "n_seqs": 312, "length": 90, "gap_rates": [0.22115384615384615, 0.1794871794871795, 0.15064102564102563, 0.060897435897435896, 0.05128205128205128, 0.04807692307692308, 0.04487179487179487, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.038461538461538464, 0.03205128205128205, 0.03205128205128205, 0.028846153846153848, 0.028846153846153848, 0.022435897435897436, 0.022435897435897436, 0.022435897435897436, 0.022435897435897436, 0.022435897435897436, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.019230769230769232, 0.019230769230769232, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.00641025641025641, 0.022435897435897436, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.016025641025641024, 0.019230769230769232, 0.022435897435897436, 0.022435897435897436, 0.022435897435897436, 0.022435897435897436, 0.022435897435897436, 0.02564102564102564, 0.02564102564102564, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.03205128205128205, 0.04807692307692308, 0.08653846153846154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PIN_3.gap.json b/pfam_gap_rates/PIN_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..726e7d3bbd5b8ee57f14d097edef792c646ff1de
--- /dev/null
+++ b/pfam_gap_rates/PIN_3.gap.json
@@ -0,0 +1 @@
+{"family": "PIN_3", "n_seqs": 946, "length": 124, "gap_rates": [0.45665961945031713, 0.15961945031712474, 0.06976744186046512, 0.05813953488372093, 0.05708245243128964, 0.05708245243128964, 0.056025369978858354, 0.056025369978858354, 0.05391120507399577, 0.05179704016913319, 0.0507399577167019, 0.0507399577167019, 0.0507399577167019, 0.0507399577167019, 0.24841437632135308, 0.23044397463002114, 0.21458773784355178, 0.3171247357293869, 0.7949260042283298, 0.8266384778012685, 0.7695560253699789, 0.2156448202959831, 0.04756871035940803, 0.04439746300211417, 0.0412262156448203, 0.03699788583509514, 0.03382663847780127, 0.0306553911205074, 0.02959830866807611, 0.03699788583509514, 0.03488372093023256, 0.035940803382663845, 0.02854122621564482, 0.03276955602536998, 0.02959830866807611, 0.03276955602536998, 0.02536997885835095, 0.024312896405919663, 0.016913319238900635, 0.013742071881606765, 0.013742071881606765, 0.013742071881606765, 0.013742071881606765, 0.012684989429175475, 0.011627906976744186, 0.010570824524312896, 0.011627906976744186, 0.011627906976744186, 0.0919661733615222, 0.08985200845665962, 0.08879492600422834, 0.19873150105708245, 0.039112050739957716, 0.02748414376321353, 0.28964059196617337, 0.23784355179704017, 0.06342494714587738, 0.06976744186046512, 0.13424947145877378, 0.11839323467230443, 0.05391120507399577, 0.035940803382663845, 0.02854122621564482, 0.02854122621564482, 0.02536997885835095, 0.02854122621564482, 0.0306553911205074, 0.14587737843551796, 0.08668076109936575, 0.05179704016913319, 0.045454545454545456, 0.049682875264270614, 0.049682875264270614, 0.05919661733615222, 0.24312896405919662, 0.8879492600422833, 0.587737843551797, 0.635306553911205, 0.6152219873150105, 0.9323467230443975, 0.9112050739957717, 0.06871035940803383, 0.046511627906976744, 0.03699788583509514, 0.02854122621564482, 0.03276955602536998, 0.035940803382663845, 0.08456659619450317, 0.049682875264270614, 0.035940803382663845, 0.042283298097251586, 0.046511627906976744, 0.9429175475687104, 0.08139534883720931, 0.0919661733615222, 0.2959830866807611, 0.2219873150105708, 0.0306553911205074, 0.9355179704016914, 0.02536997885835095, 0.022198731501057084, 0.021141649048625793, 0.0200845665961945, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.022198731501057084, 0.022198731501057084, 0.022198731501057084, 0.02536997885835095, 0.02536997885835095, 0.02748414376321353, 0.0708245243128964, 0.03276955602536998, 0.03171247357293869, 0.039112050739957716, 0.03699788583509514, 0.03699788583509514, 0.03805496828752643, 0.039112050739957716, 0.04334038054968287, 0.13742071881606766, 0.5338266384778013], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PLA2_B.gap.json b/pfam_gap_rates/PLA2_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5a4083aff39b6cee4b251e3345608c4e5b6694b
--- /dev/null
+++ b/pfam_gap_rates/PLA2_B.gap.json
@@ -0,0 +1 @@
+{"family": "PLA2_B", "n_seqs": 704, "length": 541, "gap_rates": [0.28267045454545453, 0.21306818181818182, 0.21022727272727273, 0.203125, 0.2002840909090909, 0.19744318181818182, 0.19744318181818182, 0.19744318181818182, 0.19744318181818182, 0.19744318181818182, 0.19744318181818182, 0.19886363636363635, 0.19602272727272727, 0.19744318181818182, 0.19744318181818182, 0.19744318181818182, 0.19886363636363635, 0.19460227272727273, 0.19176136363636365, 0.1903409090909091, 0.1903409090909091, 0.18892045454545456, 0.1903409090909091, 0.19176136363636365, 0.5653409090909091, 0.5625, 0.5639204545454546, 0.5653409090909091, 0.5610795454545454, 0.5596590909090909, 0.5553977272727273, 0.6619318181818182, 0.8636363636363636, 0.6505681818181818, 0.5994318181818182, 0.19602272727272727, 0.1903409090909091, 0.1875, 0.18323863636363635, 0.18323863636363635, 0.18323863636363635, 0.18323863636363635, 0.18323863636363635, 0.18323863636363635, 0.18323863636363635, 0.18323863636363635, 0.18323863636363635, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PLAT.gap.json b/pfam_gap_rates/PLAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c49c10bdc02d3ed1d4b30018df583f4d82ca183
--- /dev/null
+++ b/pfam_gap_rates/PLAT.gap.json
@@ -0,0 +1 @@
+{"family": "PLAT", "n_seqs": 2052, "length": 136, "gap_rates": [0.3762183235867446, 0.30409356725146197, 0.27144249512670565, 0.2548732943469786, 0.23684210526315788, 0.2290448343079922, 0.9439571150097466, 0.2149122807017544, 0.24317738791423002, 0.2524366471734893, 0.25, 0.26120857699805067, 0.25389863547758285, 0.23976608187134502, 0.18762183235867447, 0.17495126705653022, 0.16812865497076024, 0.16374269005847952, 0.16033138401559455, 0.16617933723196882, 0.16374269005847952, 0.1466861598440546, 0.13742690058479531, 0.13304093567251463, 0.12524366471734893, 0.12134502923976608, 0.11842105263157894, 0.11500974658869395, 0.11354775828460038, 0.11500974658869395, 0.11695906432748537, 0.4449317738791423, 0.3776803118908382, 0.1276803118908382, 0.1301169590643275, 0.12183235867446393, 0.11744639376218323, 0.1276803118908382, 0.341130604288499, 0.6125730994152047, 0.2909356725146199, 0.24853801169590642, 0.2334307992202729, 0.9327485380116959, 0.10380116959064327, 0.11598440545808966, 0.1067251461988304, 0.9127680311890838, 0.08187134502923976, 0.0769980506822612, 0.07017543859649122, 0.13742690058479531, 0.04580896686159844, 0.036062378167641324, 0.022417153996101363, 0.021929824561403508, 0.019980506822612085, 0.020955165692007796, 0.021442495126705652, 0.09259259259259259, 0.028752436647173488, 0.22855750487329435, 0.8864522417153996, 0.17738791423001948, 0.9069200779727096, 0.9137426900584795, 0.9166666666666666, 0.9108187134502924, 0.9049707602339181, 0.021929824561403508, 0.015594541910331383, 0.01608187134502924, 0.016569200779727095, 0.015594541910331383, 0.015107212475633527, 0.014132553606237816, 0.014132553606237816, 0.014619883040935672, 0.014619883040935672, 0.015107212475633527, 0.17592592592592593, 0.19103313840155944, 0.21393762183235868, 0.20955165692007796, 0.19200779727095516, 0.8430799220272904, 0.9278752436647173, 0.9463937621832359, 0.9405458089668616, 0.9035087719298246, 0.8128654970760234, 0.195906432748538, 0.03167641325536062, 0.020955165692007796, 0.02046783625730994, 0.02290448343079922, 0.02387914230019493, 0.02387914230019493, 0.025341130604288498, 0.02631578947368421, 0.028752436647173488, 0.031189083820662766, 0.41569200779727095, 0.8055555555555556, 0.27144249512670565, 0.09941520467836257, 0.11647173489278752, 0.09697855750487329, 0.23635477582846004, 0.08333333333333333, 0.17690058479532164, 0.07066276803118908, 0.0726120857699805, 0.9405458089668616, 0.07992202729044834, 0.07943469785575048, 0.08235867446393762, 0.08576998050682261, 0.09259259259259259, 0.09746588693957114, 0.11208576998050682, 0.1101364522417154, 0.12085769980506822, 0.15009746588693956, 0.28460038986354774, 0.3557504873294347, 0.4395711500974659, 0.48830409356725146, 0.8499025341130604, 0.6018518518518519, 0.6461988304093568, 0.6700779727095516, 0.6949317738791423, 0.7236842105263158, 0.7646198830409356, 0.8206627680311891], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PMC2NT.gap.json b/pfam_gap_rates/PMC2NT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef91a84330d10e482bb926be5281ba87649c87ea
--- /dev/null
+++ b/pfam_gap_rates/PMC2NT.gap.json
@@ -0,0 +1 @@
+{"family": "PMC2NT", "n_seqs": 249, "length": 103, "gap_rates": [0.642570281124498, 0.3413654618473896, 0.21686746987951808, 0.1285140562248996, 0.09236947791164658, 0.04417670682730924, 0.028112449799196786, 0.020080321285140562, 0.020080321285140562, 0.01606425702811245, 0.01606425702811245, 0.7831325301204819, 0.4819277108433735, 0.08433734939759036, 0.020080321285140562, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.4779116465863454, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.008032128514056224, 0.01606425702811245, 0.028112449799196786, 0.024096385542168676, 0.012048192771084338, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.0, 0.0, 0.004016064257028112, 0.08032128514056225, 0.14457831325301204, 0.3453815261044177, 0.8714859437751004, 0.9036144578313253, 0.9357429718875502, 0.9477911646586346, 0.9036144578313253, 0.8875502008032129, 0.8514056224899599, 0.4738955823293173, 0.26506024096385544, 0.1646586345381526, 0.10843373493975904, 0.0321285140562249, 0.012048192771084338, 0.01606425702811245, 0.012048192771084338, 0.39357429718875503, 0.3614457831325301, 0.3453815261044177, 0.9397590361445783, 0.0, 0.0, 0.0, 0.0, 0.9116465863453815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.008032128514056224, 0.01606425702811245, 0.024096385542168676, 0.0321285140562249, 0.04417670682730924, 0.04819277108433735, 0.07228915662650602, 0.0963855421686747, 0.1566265060240964, 0.43373493975903615], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PMP22_Claudin.gap.json b/pfam_gap_rates/PMP22_Claudin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17d591e356fb605d5aaa413d91f5c6492d2351ae
--- /dev/null
+++ b/pfam_gap_rates/PMP22_Claudin.gap.json
@@ -0,0 +1 @@
+{"family": "PMP22_Claudin", "n_seqs": 859, "length": 199, "gap_rates": [0.840512223515716, 0.610011641443539, 0.4970896391152503, 0.4528521536670547, 0.4121071012805588, 0.3585564610011641, 0.32828870779976715, 0.2840512223515716, 0.23166472642607683, 0.22118742724097787, 0.20838183934807916, 0.2060535506402794, 0.1909196740395809, 0.18742724097788127, 0.18160651920838183, 0.17578579743888242, 0.2479627473806752, 0.18975552968568102, 0.16181606519208383, 0.15832363213038417, 0.1548311990686845, 0.14668218859138532, 0.14551804423748546, 0.14435389988358557, 0.1478463329452852, 0.47846332945285214, 0.13736903376018628, 0.13387660069848661, 0.13271245634458673, 0.13271245634458673, 0.13271245634458673, 0.13154831199068684, 0.13154831199068684, 0.12922002328288706, 0.2619324796274738, 0.3806752037252619, 0.4551804423748545, 0.5797438882421421, 0.8672875436554133, 0.8952270081490105, 0.9161816065192084, 0.9185098952270081, 0.9231664726426076, 0.9220023282887078, 0.9173457508731082, 0.8987194412107101, 0.8917345750873108, 0.8498253783469151, 0.4668218859138533, 0.38649592549476136, 0.37485448195576254, 0.2770663562281723, 0.26426076833527357, 0.23748544819557627, 0.119906868451688, 0.11525029103608847, 0.11292200232828871, 0.11292200232828871, 0.10942956926658906, 0.10826542491268917, 0.10942956926658906, 0.11059371362048893, 0.10942956926658906, 0.10826542491268917, 0.10942956926658906, 0.10942956926658906, 0.7683352735739232, 0.21187427240977882, 0.14668218859138532, 0.13038416763678695, 0.12339930151338765, 0.119906868451688, 0.11059371362048893, 0.1140861466821886, 0.13387660069848661, 0.29452852153667053, 0.2828870779976717, 0.27357392316647267, 0.2561117578579744, 0.17927823050058206, 0.1629802095459837, 0.1362048894062864, 0.11757857974388825, 0.11059371362048893, 0.09313154831199069, 0.07916181606519208, 0.08149010477299184, 0.08265424912689173, 0.07566938300349244, 0.07566938300349244, 0.07334109429569266, 0.07217694994179279, 0.0640279394644936, 0.06169965075669383, 0.0570430733410943, 0.05238649592549476, 0.05238649592549476, 0.9033760186263097, 0.9126891734575088, 0.9045401629802096, 0.9010477299185099, 0.050058207217694994, 0.050058207217694994, 0.048894062863795114, 0.048894062863795114, 0.047729918509895226, 0.047729918509895226, 0.050058207217694994, 0.051222351571594875, 0.05238649592549476, 0.051222351571594875, 0.05471478463329453, 0.048894062863795114, 0.06053550640279395, 0.0570430733410943, 0.05355064027939464, 0.050058207217694994, 0.05471478463329453, 0.05238649592549476, 0.051222351571594875, 0.047729918509895226, 0.050058207217694994, 0.051222351571594875, 0.0570430733410943, 0.05471478463329453, 0.04190919674039581, 0.309662398137369, 0.39231664726426074, 0.420256111757858, 0.7171129220023282, 0.42607683352735737, 0.40279394644935973, 0.320139697322468, 0.2956926658905704, 0.04540162980209546, 0.04423748544819558, 0.04540162980209546, 0.04307334109429569, 0.04190919674039581, 0.04423748544819558, 0.04074505238649592, 0.04074505238649592, 0.03958090803259604, 0.04423748544819558, 0.047729918509895226, 0.04190919674039581, 0.04074505238649592, 0.04190919674039581, 0.04190919674039581, 0.04307334109429569, 0.04423748544819558, 0.04540162980209546, 0.046565774155995346, 0.046565774155995346, 0.047729918509895226, 0.047729918509895226, 0.05471478463329453, 0.05587892898719441, 0.059371362048894066, 0.06053550640279395, 0.06519208381839348, 0.06984866123399301, 0.10710128055878929, 0.14318975552968569, 0.15832363213038417, 0.3573923166472643, 0.3259604190919674, 0.7683352735739232, 0.9231664726426076, 0.940628637951106, 0.8777648428405123, 0.48777648428405124, 0.27357392316647267, 0.1408614668218859, 0.09662398137369034, 0.08265424912689173, 0.07217694994179279, 0.07334109429569266, 0.07334109429569266, 0.07566938300349244, 0.07683352735739232, 0.07683352735739232, 0.07916181606519208, 0.08032596041909197, 0.08032596041909197, 0.08149010477299184, 0.08847497089639116, 0.08847497089639116, 0.08731082654249127, 0.08963911525029103, 0.0919674039580908, 0.10244470314318975, 0.1210710128055879, 0.15948777648428406, 0.17229336437718276, 0.19441210710128057, 0.22467986030267753, 0.3119906868451688, 0.6426076833527358], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PMT_4TMC.gap.json b/pfam_gap_rates/PMT_4TMC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec3ced5d23ad07a33e65ff359372216292524a3f
--- /dev/null
+++ b/pfam_gap_rates/PMT_4TMC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PNPOx_C.gap.json b/pfam_gap_rates/PNPOx_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac86f6ee1a2b9d4b228be6e7be3014ee82d5e5bd
--- /dev/null
+++ b/pfam_gap_rates/PNPOx_C.gap.json
@@ -0,0 +1 @@
+{"family": "PNPOx_C", "n_seqs": 1132, "length": 54, "gap_rates": [0.026501766784452298, 0.022084805653710248, 0.011484098939929329, 0.00441696113074205, 0.00441696113074205, 0.00265017667844523, 0.0017667844522968198, 0.0017667844522968198, 0.0008833922261484099, 0.0008833922261484099, 0.0008833922261484099, 0.0008833922261484099, 0.0008833922261484099, 0.0008833922261484099, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0017667844522968198, 0.00265017667844523, 0.0035335689045936395, 0.00441696113074205, 0.0035335689045936395, 0.00441696113074205, 0.00530035335689046, 0.007067137809187279, 0.01060070671378092, 0.015901060070671377, 0.022968197879858657, 0.036219081272084806, 0.622791519434629, 0.9240282685512368, 0.9319787985865724, 0.946113074204947, 0.9275618374558304, 0.9107773851590106, 0.38604240282685515, 0.8180212014134276, 0.8842756183745583, 0.9469964664310954, 0.9178445229681979, 0.8586572438162544, 0.7756183745583038, 0.03356890459363958, 0.03268551236749117, 0.027385159010600707, 0.02561837455830389, 0.02561837455830389, 0.028268551236749116, 0.030918727915194347, 0.03445229681978799, 0.04151943462897526, 0.046819787985865724], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/POP1.gap.json b/pfam_gap_rates/POP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c11c4b84851e34a69401b22263651a4b6d81309f
--- /dev/null
+++ b/pfam_gap_rates/POP1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PP-binding.gap.json b/pfam_gap_rates/PP-binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6166755d8e6df3b5435cede6b351ed7f9bb8782a
--- /dev/null
+++ b/pfam_gap_rates/PP-binding.gap.json
@@ -0,0 +1 @@
+{"family": "PP-binding", "n_seqs": 5000, "length": 70, "gap_rates": [0.8398, 0.3914, 0.1726, 0.1424, 0.1176, 0.101, 0.0886, 0.083, 0.079, 0.0744, 0.072, 0.0606, 0.0688, 0.9142, 0.0556, 0.1904, 0.2838, 0.1672, 0.1004, 0.0774, 0.018, 0.01, 0.0096, 0.0088, 0.0072, 0.0064, 0.8036, 0.0058, 0.005, 0.004, 0.0012, 0.0006, 0.0002, 0.0004, 0.0002, 0.0, 0.0004, 0.0002, 0.0002, 0.0, 0.0004, 0.0006, 0.0028, 0.0026, 0.0028, 0.0148, 0.166, 0.0192, 0.0284, 0.013, 0.014, 0.014, 0.0182, 0.0212, 0.0322, 0.0348, 0.0522, 0.0472, 0.9492, 0.0482, 0.0496, 0.0516, 0.055, 0.0608, 0.0694, 0.0764, 0.1068, 0.1758, 0.3096, 0.4806], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PPC.gap.json b/pfam_gap_rates/PPC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b279f21df200aba9e9fea0fd30dbbdb4d440754d
--- /dev/null
+++ b/pfam_gap_rates/PPC.gap.json
@@ -0,0 +1 @@
+{"family": "PPC", "n_seqs": 880, "length": 95, "gap_rates": [0.7090909090909091, 0.4875, 0.3352272727272727, 0.21363636363636362, 0.0659090909090909, 0.05113636363636364, 0.038636363636363635, 0.031818181818181815, 0.026136363636363635, 0.026136363636363635, 0.013636363636363636, 0.004545454545454545, 0.005681818181818182, 0.004545454545454545, 0.6602272727272728, 0.004545454545454545, 0.003409090909090909, 0.003409090909090909, 0.0022727272727272726, 0.003409090909090909, 0.9056818181818181, 0.9431818181818182, 0.9340909090909091, 0.8988636363636363, 0.003409090909090909, 0.00909090909090909, 0.010227272727272727, 0.017045454545454544, 0.09431818181818181, 0.7511363636363636, 0.8454545454545455, 0.8988636363636363, 0.9386363636363636, 0.9193181818181818, 0.8875, 0.803409090909091, 0.7068181818181818, 0.004545454545454545, 0.005681818181818182, 0.0, 0.8931818181818182, 0.8738636363636364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.1159090909090909, 0.010227272727272727, 0.004545454545454545, 0.003409090909090909, 0.0022727272727272726, 0.0011363636363636363, 0.19090909090909092, 0.1784090909090909, 0.17727272727272728, 0.056818181818181816, 0.025, 0.8693181818181818, 0.9147727272727273, 0.946590909090909, 0.8954545454545455, 0.803409090909091, 0.14431818181818182, 0.16477272727272727, 0.1, 0.04090909090909091, 0.9420454545454545, 0.9454545454545454, 0.9443181818181818, 0.9306818181818182, 0.031818181818181815, 0.08409090909090909, 0.00909090909090909, 0.007954545454545454, 0.007954545454545454, 0.013636363636363636, 0.20795454545454545, 0.015909090909090907, 0.0125, 0.9477272727272728, 0.0659090909090909, 0.0125, 0.010227272727272727, 0.010227272727272727, 0.015909090909090907, 0.014772727272727272, 0.017045454545454544, 0.025, 0.06818181818181818, 0.1215909090909091, 0.30113636363636365, 0.7625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PPK2.gap.json b/pfam_gap_rates/PPK2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a75ff315d61f61a25d48bdded97bb4480dffba6
--- /dev/null
+++ b/pfam_gap_rates/PPK2.gap.json
@@ -0,0 +1 @@
+{"family": "PPK2", "n_seqs": 1558, "length": 238, "gap_rates": [0.9409499358151476, 0.5237483953786907, 0.30359435173299104, 0.1816431322207959, 0.14120667522464697, 0.10911424903722722, 0.09306803594351733, 0.07830551989730423, 0.07188703465982028, 0.06418485237483953, 0.055198973042362, 0.04813863928112965, 0.043645699614890884, 0.03915275994865212, 0.037227214377406934, 0.03465982028241335, 0.03273427471116817, 0.03080872913992298, 0.03080872913992298, 0.03273427471116817, 0.031450577663671375, 0.028883183568677792, 0.027599486521181, 0.027599486521181, 0.02631578947368421, 0.02631578947368421, 0.02374839537869063, 0.021181001283697046, 0.02053915275994865, 0.02053915275994865, 0.02053915275994865, 0.7862644415917843, 0.019255455712451863, 0.018613607188703467, 0.01797175866495507, 0.017329910141206675, 0.017329910141206675, 0.017329910141206675, 0.017329910141206675, 0.017329910141206675, 0.016046213093709884, 0.01540436456996149, 0.01540436456996149, 0.01540436456996149, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PPR.gap.json b/pfam_gap_rates/PPR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1c53cb95bd6e4ef48d8cd47ed8b664090557ebd
--- /dev/null
+++ b/pfam_gap_rates/PPR.gap.json
@@ -0,0 +1 @@
+{"family": "PPR", "n_seqs": 5000, "length": 31, "gap_rates": [0.7358, 0.4472, 0.3172, 0.117, 0.0704, 0.0298, 0.0186, 0.013, 0.0096, 0.0034, 0.0026, 0.0018, 0.0014, 0.002, 0.0014, 0.0026, 0.0024, 0.0032, 0.0036, 0.0054, 0.008, 0.0106, 0.0182, 0.0354, 0.087, 0.139, 0.2468, 0.3658, 0.4692, 0.6208, 0.8088], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PPR_3.gap.json b/pfam_gap_rates/PPR_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc73aeb8f1210f0c5760fee46ce65d218164b121
--- /dev/null
+++ b/pfam_gap_rates/PPR_3.gap.json
@@ -0,0 +1 @@
+{"family": "PPR_3", "n_seqs": 4671, "length": 62, "gap_rates": [0.8818240205523442, 0.5568400770712909, 0.455148790408906, 0.4142581888246628, 0.3808606294155427, 0.33504602868764716, 0.31021194605009633, 0.28195247270391777, 0.26182830229073006, 0.2397773496039392, 0.2138728323699422, 0.18968101049025904, 0.14964675658317278, 0.11881824020552344, 0.10468850353243417, 0.09227146221365874, 0.0708627702847356, 0.045600513808606295, 0.03960608006850781, 0.036394776279169344, 0.03189895097409548, 0.028901734104046242, 0.02676086491115393, 0.02569043031470777, 0.03767929779490473, 0.033397559409120106, 0.028901734104046242, 0.02419182187968315, 0.023549561121815457, 0.02119460500963391, 0.01969599657460929, 0.014771997430956968, 0.008777563690858489, 0.0062085206593877115, 0.006636694497966175, 0.002354956112181546, 0.0027831299507600086, 0.003639477627916934, 0.004709912224363092, 0.005780346820809248, 0.01049025904517234, 0.023335474202526227, 0.03896381931064012, 0.048811817597944764, 0.057589381288803254, 0.06872190109184328, 0.08413615928066795, 0.09526867908370798, 0.10468850353243417, 0.11731963177049883, 0.12395632626846499, 0.13059302076643117, 0.1376578891029758, 0.14664953971312353, 0.15499892956540356, 0.1635624063369728, 0.18133162063797903, 0.23035752515521302, 0.31299507600085635, 0.39541853992721043, 0.6788696210661529, 0.8357953329051595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRONE.gap.json b/pfam_gap_rates/PRONE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..086f12c5805faaea1a3bea5bc3112978c738d5ba
--- /dev/null
+++ b/pfam_gap_rates/PRONE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PRP3.gap.json b/pfam_gap_rates/PRP3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29173ceadb8b2e7e23330ff4f91d9f1ac6302d14
--- /dev/null
+++ b/pfam_gap_rates/PRP3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PS-DH.gap.json b/pfam_gap_rates/PS-DH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d728b4c7e793d945cbf5fbd49e3bc00e24d564d
--- /dev/null
+++ b/pfam_gap_rates/PS-DH.gap.json
@@ -0,0 +1 @@
+{"family": "PS-DH", "n_seqs": 2907, "length": 351, "gap_rates": [0.5153078775369797, 0.44926040591675265, 0.42070863433092537, 0.41279669762641896, 0.48985208118335055, 0.4172686618507052, 0.4079807361541108, 0.39903680770553834, 0.39525283797729616, 0.38562091503267976, 0.41830065359477125, 0.9387684898520812, 0.4320605435156519, 0.347781217750258, 0.32507739938080493, 0.2934296525627795, 0.28586171310629516, 0.2786377708978328, 0.2679738562091503, 0.260749914000688, 0.25455796353629173, 0.239422084623323, 0.22807017543859648, 0.21775025799793601, 0.2153422772617819, 0.19676642586859305, 0.1781905744754042, 0.15239078087375302, 0.20261437908496732, 0.12074303405572756, 0.09975920192638459, 0.08806329549363605, 0.07533539731682147, 0.0715514275885793, 0.0715514275885793, 0.0698314413484692, 0.06811145510835913, 0.06776745786033712, 0.06501547987616099, 0.06123151014791882, 0.06123151014791882, 0.059511523907808735, 0.059511523907808735, 0.059511523907808735, 0.058823529411764705, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PSD5.gap.json b/pfam_gap_rates/PSD5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f69944a6bc48ac222538a940fbab263451afa6e
--- /dev/null
+++ b/pfam_gap_rates/PSD5.gap.json
@@ -0,0 +1 @@
+{"family": "PSD5", "n_seqs": 264, "length": 66, "gap_rates": [0.571969696969697, 0.2159090909090909, 0.13257575757575757, 0.06439393939393939, 0.026515151515151516, 0.011363636363636364, 0.003787878787878788, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9204545454545454, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.0, 0.0, 0.011363636363636364, 0.015151515151515152, 0.011363636363636364, 0.022727272727272728, 0.05303030303030303, 0.04924242424242424, 0.045454545454545456, 0.041666666666666664, 0.05303030303030303, 0.946969696969697, 0.2840909090909091, 0.9393939393939394, 0.9393939393939394, 0.030303030303030304, 0.030303030303030304, 0.022727272727272728, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003787878787878788, 0.022727272727272728, 0.041666666666666664, 0.13257575757575757, 0.19696969696969696], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSK.gap.json b/pfam_gap_rates/PSK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69757665996444f33f8b30cf2baaac2f7f0aab1d
--- /dev/null
+++ b/pfam_gap_rates/PSK.gap.json
@@ -0,0 +1 @@
+{"family": "PSK", "n_seqs": 127, "length": 101, "gap_rates": [0.7559055118110236, 0.6220472440944882, 0.5590551181102362, 0.5590551181102362, 0.5590551181102362, 0.5590551181102362, 0.5511811023622047, 0.5511811023622047, 0.5511811023622047, 0.5433070866141733, 0.5433070866141733, 0.5433070866141733, 0.5433070866141733, 0.5433070866141733, 0.5433070866141733, 0.5433070866141733, 0.5433070866141733, 0.9133858267716536, 0.937007874015748, 0.8976377952755905, 0.5826771653543307, 0.6535433070866141, 0.6614173228346457, 0.6614173228346457, 0.6614173228346457, 0.6614173228346457, 0.6614173228346457, 0.7165354330708661, 0.7401574803149606, 0.7322834645669292, 0.7165354330708661, 0.7086614173228346, 0.6692913385826772, 0.937007874015748, 0.9448818897637795, 0.905511811023622, 0.6692913385826772, 0.6456692913385826, 0.6062992125984252, 0.5826771653543307, 0.5433070866141733, 0.5354330708661418, 0.5275590551181102, 0.5354330708661418, 0.5196850393700787, 0.5039370078740157, 0.48031496062992124, 0.49606299212598426, 0.48031496062992124, 0.4645669291338583, 0.5826771653543307, 0.33070866141732286, 0.29133858267716534, 0.2440944881889764, 0.2047244094488189, 0.18110236220472442, 0.16535433070866143, 0.16535433070866143, 0.14960629921259844, 0.4094488188976378, 0.3228346456692913, 0.889763779527559, 0.9291338582677166, 0.7401574803149606, 0.25984251968503935, 0.2125984251968504, 0.1889763779527559, 0.18110236220472442, 0.015748031496062992, 0.015748031496062992, 0.937007874015748, 0.8976377952755905, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.7086614173228346, 0.2204724409448819, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015748031496062992, 0.0, 0.0, 0.0, 0.7086614173228346, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.05511811023622047, 0.12598425196850394, 0.6771653543307087], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PT.gap.json b/pfam_gap_rates/PT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..778719b985b7a97638b122a4f4aee781a713d451
--- /dev/null
+++ b/pfam_gap_rates/PT.gap.json
@@ -0,0 +1 @@
+{"family": "PT", "n_seqs": 138, "length": 36, "gap_rates": [0.6594202898550725, 0.2536231884057971, 0.15942028985507245, 0.10869565217391304, 0.050724637681159424, 0.043478260869565216, 0.036231884057971016, 0.014492753623188406, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014492753623188406, 0.0, 0.0, 0.0, 0.0, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.014492753623188406, 0.021739130434782608, 0.021739130434782608, 0.043478260869565216, 0.050724637681159424, 0.07246376811594203, 0.09420289855072464, 0.14492753623188406, 0.1956521739130435, 0.2826086956521739, 0.7101449275362319], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTPS.gap.json b/pfam_gap_rates/PTPS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27670af20dac38417f2d351a8979dbcdbe965f4a
--- /dev/null
+++ b/pfam_gap_rates/PTPS.gap.json
@@ -0,0 +1 @@
+{"family": "PTPS", "n_seqs": 1820, "length": 180, "gap_rates": [0.8461538461538461, 0.36043956043956044, 0.2642857142857143, 0.21593406593406594, 0.16813186813186815, 0.12197802197802197, 0.1, 0.07967032967032966, 0.07692307692307693, 0.07362637362637363, 0.07252747252747253, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.8807692307692307, 0.09505494505494505, 0.07252747252747253, 0.06923076923076923, 0.6582417582417582, 0.7785714285714286, 0.7824175824175824, 0.782967032967033, 0.7857142857142857, 0.7835164835164835, 0.7824175824175824, 0.7796703296703297, 0.7774725274725275, 0.6351648351648351, 0.08791208791208792, 0.06373626373626373, 0.06208791208791209, 0.05989010989010989, 0.056593406593406594, 0.051648351648351645, 0.8060439560439561, 0.7725274725274726, 0.0510989010989011, 0.01868131868131868, 0.01868131868131868, 0.01868131868131868, 0.01868131868131868, 0.01868131868131868, 0.019230769230769232, 0.017582417582417582, 0.018131868131868133, 0.017582417582417582, 0.01703296703296703, 0.016483516483516484, 0.015934065934065933, 0.017582417582417582, 0.22967032967032966, 0.845054945054945, 0.8774725274725275, 0.9186813186813186, 0.8675824175824176, 0.8241758241758241, 0.0521978021978022, 0.03956043956043956, 0.031868131868131866, 0.023076923076923078, 0.023076923076923078, 0.01978021978021978, 0.02032967032967033, 0.020879120879120878, 0.015934065934065933, 0.014835164835164835, 0.014835164835164835, 0.013736263736263736, 0.013186813186813187, 0.012087912087912088, 0.012637362637362638, 0.03296703296703297, 0.033516483516483515, 0.03626373626373627, 0.053296703296703295, 0.578021978021978, 0.043406593406593405, 0.04065934065934066, 0.011538461538461539, 0.014285714285714285, 0.013736263736263736, 0.00989010989010989, 0.00934065934065934, 0.00934065934065934, 0.00934065934065934, 0.008791208791208791, 0.728021978021978, 0.00934065934065934, 0.4950549450549451, 0.046703296703296704, 0.046703296703296704, 0.025274725274725275, 0.02142857142857143, 0.016483516483516484, 0.02857142857142857, 0.12252747252747252, 0.2857142857142857, 0.2725274725274725, 0.6686813186813186, 0.6846153846153846, 0.6895604395604396, 0.6906593406593406, 0.6917582417582417, 0.7137362637362638, 0.7884615384615384, 0.843956043956044, 0.8835164835164835, 0.8884615384615384, 0.8917582417582418, 0.8978021978021978, 0.9021978021978022, 0.9225274725274726, 0.9489010989010989, 0.9401098901098901, 0.9054945054945055, 0.8994505494505495, 0.8961538461538462, 0.889010989010989, 0.884065934065934, 0.8741758241758242, 0.8192307692307692, 0.7461538461538462, 0.6994505494505494, 0.6906593406593406, 0.6901098901098901, 0.6895604395604396, 0.6708791208791208, 0.654945054945055, 0.6087912087912087, 0.02142857142857143, 0.02197802197802198, 0.02142857142857143, 0.02032967032967033, 0.020879120879120878, 0.020879120879120878, 0.02197802197802198, 0.022527472527472527, 0.022527472527472527, 0.022527472527472527, 0.022527472527472527, 0.022527472527472527, 0.023076923076923078, 0.023076923076923078, 0.025274725274725275, 0.02967032967032967, 0.031868131868131866, 0.03571428571428571, 0.7571428571428571, 0.8791208791208791, 0.9186813186813186, 0.9285714285714286, 0.8994505494505495, 0.810989010989011, 0.7175824175824176, 0.5307692307692308, 0.39395604395604394, 0.34505494505494505, 0.3087912087912088, 0.12307692307692308, 0.08571428571428572, 0.08626373626373626, 0.09175824175824175, 0.1043956043956044, 0.07032967032967033, 0.07197802197802197, 0.07362637362637363, 0.07912087912087912, 0.08516483516483517, 0.0967032967032967, 0.10274725274725274, 0.10934065934065934, 0.11703296703296703, 0.11978021978021978, 0.12417582417582418, 0.14505494505494507, 0.1956043956043956, 0.29395604395604397, 0.6571428571428571, 0.8983516483516484], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PUA.gap.json b/pfam_gap_rates/PUA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccd92c3f2dcbd952cf0b3f787e0e21ae89b213b3
--- /dev/null
+++ b/pfam_gap_rates/PUA.gap.json
@@ -0,0 +1 @@
+{"family": "PUA", "n_seqs": 2366, "length": 80, "gap_rates": [0.27303465765004226, 0.11496196111580727, 0.05874894336432798, 0.047337278106508875, 0.04268808114961961, 0.040997464074387154, 0.04057480980557904, 0.04015215553677092, 0.037193575655114115, 0.032121724429416736, 0.030431107354184278, 0.027895181741335588, 0.026204564666103127, 0.026204564666103127, 0.023668639053254437, 0.6158072696534235, 0.02197802197802198, 0.016483516483516484, 0.005494505494505495, 0.004649196956889264, 0.00422654268808115, 0.0038038884192730348, 0.0038038884192730348, 0.0033812341504649195, 0.00253592561284869, 0.00253592561284869, 0.004649196956889264, 0.002113271344040575, 0.002113271344040575, 0.0008453085376162299, 0.015215553677092139, 0.001267962806424345, 0.8634826711749789, 0.9023668639053254, 0.8647506339814032, 0.8626373626373627, 0.005494505494505495, 0.006762468300929839, 0.008030431107354184, 0.009721048182586645, 0.01014370245139476, 0.010566356720202874, 0.01014370245139476, 0.01014370245139476, 0.01267962806424345, 0.014792899408284023, 0.018596787827557058, 0.08326289095519865, 0.8229078613693999, 0.03888419273034658, 0.028740490278951817, 0.029163144547759933, 0.028740490278951817, 0.0253592561284869, 0.026627218934911243, 0.027049873203719356, 0.027472527472527472, 0.029163144547759933, 0.03127641589180051, 0.03169907016060862, 0.0338123415046492, 0.034657650042265425, 0.03634826711749789, 0.03803888419273035, 0.03930684699915469, 0.05114116652578191, 0.05874894336432798, 0.06677937447168217, 0.07945900253592561, 0.08368554522400676, 0.09213863060016907, 0.10059171597633136, 0.10989010989010989, 0.12256973795435334, 0.14201183431952663, 0.1724429416737109, 0.2231614539306847, 0.2743026204564666, 0.3875739644970414, 0.610312764158918], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PaO.gap.json b/pfam_gap_rates/PaO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6f60bf3e59e1d2d6b3ed19c0cb47e78d2e31e89
--- /dev/null
+++ b/pfam_gap_rates/PaO.gap.json
@@ -0,0 +1 @@
+{"family": "PaO", "n_seqs": 315, "length": 124, "gap_rates": [0.14285714285714285, 0.10793650793650794, 0.09841269841269841, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.09206349206349207, 0.08888888888888889, 0.08253968253968254, 0.08253968253968254, 0.07936507936507936, 0.0761904761904762, 0.0761904761904762, 0.06984126984126984, 0.08253968253968254, 0.38412698412698415, 0.37777777777777777, 0.32063492063492066, 0.5492063492063493, 0.5619047619047619, 0.6730158730158731, 0.6888888888888889, 0.8698412698412699, 0.8952380952380953, 0.9111111111111111, 0.9301587301587302, 0.946031746031746, 0.9428571428571428, 0.9174603174603174, 0.9047619047619048, 0.8857142857142857, 0.7111111111111111, 0.6793650793650794, 0.5619047619047619, 0.5555555555555556, 0.4380952380952381, 0.08888888888888889, 0.050793650793650794, 0.044444444444444446, 0.03492063492063492, 0.03492063492063492, 0.03492063492063492, 0.025396825396825397, 0.025396825396825397, 0.025396825396825397, 0.025396825396825397, 0.025396825396825397, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.01904761904761905, 0.015873015873015872, 0.012698412698412698, 0.009523809523809525, 0.012698412698412698, 0.01904761904761905, 0.044444444444444446, 0.04126984126984127, 0.0380952380952381, 0.07301587301587302, 0.06984126984126984, 0.05396825396825397, 0.047619047619047616, 0.050793650793650794, 0.05714285714285714, 0.05714285714285714, 0.06031746031746032, 0.06349206349206349, 0.031746031746031744, 0.46984126984126984, 0.6317460317460317, 0.7619047619047619, 0.8666666666666667, 0.8761904761904762, 0.9206349206349206, 0.9301587301587302, 0.9492063492063492, 0.946031746031746, 0.9206349206349206, 0.9142857142857143, 0.8698412698412699, 0.8666666666666667, 0.746031746031746, 0.6222222222222222, 0.4634920634920635, 0.03492063492063492, 0.04126984126984127, 0.01904761904761905, 0.946031746031746, 0.946031746031746, 0.946031746031746, 0.01904761904761905, 0.01904761904761905, 0.025396825396825397, 0.025396825396825397, 0.031746031746031744, 0.031746031746031744, 0.0380952380952381, 0.9365079365079365, 0.17142857142857143, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.03492063492063492, 0.03492063492063492, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.047619047619047616, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.044444444444444446, 0.047619047619047616, 0.050793650793650794, 0.06984126984126984, 0.08888888888888889, 0.10158730158730159, 0.14285714285714285, 0.25396825396825395, 0.7714285714285715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PaaA_PaaC.gap.json b/pfam_gap_rates/PaaA_PaaC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e4702e9444e2b825ccf8bf7fb7113b384dc55b2
--- /dev/null
+++ b/pfam_gap_rates/PaaA_PaaC.gap.json
@@ -0,0 +1 @@
+{"family": "PaaA_PaaC", "n_seqs": 640, "length": 309, "gap_rates": [0.5515625, 0.5296875, 0.521875, 0.5046875, 0.471875, 0.4390625, 0.4, 0.371875, 0.3359375, 0.3046875, 0.2625, 0.196875, 0.134375, 0.0765625, 0.0640625, 0.05625, 0.0453125, 0.034375, 0.0296875, 0.0234375, 0.021875, 0.021875, 0.021875, 0.021875, 0.021875, 0.021875, 0.0203125, 0.0203125, 0.0203125, 0.0203125, 0.0203125, 0.0203125, 0.0203125, 0.0203125, 0.0203125, 0.01875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.01875, 0.01875, 0.01875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.01875, 0.01875, 0.01875, 0.0171875, 0.01875, 0.01875, 0.0203125, 0.01875, 0.01875, 0.03125, 0.0421875, 0.64375, 0.5484375, 0.940625, 0.48125, 0.05625, 0.91875, 0.9265625, 0.9375, 0.9421875, 0.9421875, 0.9421875, 0.9390625, 0.934375, 0.9203125, 0.915625, 0.1046875, 0.0359375, 0.025, 0.0234375, 0.0234375, 0.021875, 0.0203125, 0.021875, 0.0203125, 0.0203125, 0.01875, 0.01875, 0.0171875, 0.0171875, 0.01875, 0.0171875, 0.0328125, 0.0234375, 0.0171875, 0.015625, 0.0171875, 0.0171875, 0.015625, 0.0140625, 0.0140625, 0.0140625, 0.9140625, 0.9171875, 0.9265625, 0.928125, 0.93125, 0.928125, 0.9265625, 0.91875, 0.9171875, 0.9140625, 0.0140625, 0.0140625, 0.0140625, 0.0140625, 0.0140625, 0.0140625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.0171875, 0.025, 0.025, 0.0265625, 0.021875, 0.01875, 0.01875, 0.01875, 0.01875, 0.015625, 0.015625, 0.015625, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.0171875, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.0171875, 0.021875, 0.0203125, 0.046875, 0.0359375, 0.0359375, 0.04375, 0.04375, 0.0359375, 0.03125, 0.0265625, 0.034375, 0.0328125, 0.03125, 0.03125, 0.028125, 0.025, 0.025, 0.025, 0.025, 0.0265625, 0.0265625, 0.0265625, 0.0265625, 0.0265625, 0.028125, 0.028125, 0.028125, 0.028125, 0.028125, 0.028125, 0.0296875, 0.03125, 0.0328125, 0.053125, 0.05625, 0.475, 0.5390625, 0.94375, 0.94375, 0.5734375, 0.503125, 0.4609375, 0.08125, 0.08125, 0.08125, 0.1, 0.0953125, 0.065625, 0.046875, 0.0453125, 0.0421875, 0.0375, 0.0328125, 0.0328125, 0.0328125, 0.0328125, 0.0296875, 0.028125, 0.0296875, 0.0296875, 0.0296875, 0.0296875, 0.0296875, 0.0296875, 0.0296875, 0.0296875, 0.0296875, 0.03125, 0.034375, 0.0328125, 0.034375, 0.034375, 0.034375, 0.0359375, 0.0453125, 0.059375, 0.0578125, 0.0625, 0.9234375, 0.9296875, 0.9296875, 0.8984375, 0.5484375, 0.1109375, 0.1078125, 0.9453125, 0.109375, 0.0953125, 0.0984375, 0.1, 0.1015625, 0.1015625, 0.121875, 0.1125, 0.10625, 0.1078125, 0.115625, 0.125, 0.5546875, 0.5515625, 0.128125, 0.1265625, 0.1265625, 0.5640625, 0.5640625, 0.5640625, 0.5640625, 0.5640625, 0.5640625, 0.5640625, 0.5671875, 0.565625, 0.5640625, 0.5640625, 0.5640625, 0.5640625, 0.5640625, 0.5640625, 0.5625, 0.128125, 0.128125, 0.128125, 0.1296875, 0.1296875, 0.13125, 0.1359375, 0.1359375, 0.1390625, 0.14375, 0.146875, 0.146875, 0.1484375, 0.1484375, 0.1546875, 0.1625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pacs-1.gap.json b/pfam_gap_rates/Pacs-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91d1cd83cae3ecf9b83f0fd2556fdd82b618f809
--- /dev/null
+++ b/pfam_gap_rates/Pacs-1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Paf67.gap.json b/pfam_gap_rates/Paf67.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cff7e02842fe5f3bc44cd752b21e5d7500ee630
--- /dev/null
+++ b/pfam_gap_rates/Paf67.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PapD_C.gap.json b/pfam_gap_rates/PapD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d075596a2310e753a4557308aeb282d2c26b38b
--- /dev/null
+++ b/pfam_gap_rates/PapD_C.gap.json
@@ -0,0 +1 @@
+{"family": "PapD_C", "n_seqs": 158, "length": 69, "gap_rates": [0.4240506329113924, 0.08860759493670886, 0.0189873417721519, 0.0189873417721519, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.0189873417721519, 0.012658227848101266, 0.012658227848101266, 0.0189873417721519, 0.04430379746835443, 0.05063291139240506, 0.04430379746835443, 0.03164556962025317, 0.06329113924050633, 0.12658227848101267, 0.3291139240506329, 0.25949367088607594, 0.8354430379746836, 0.9430379746835443, 0.8607594936708861, 0.6518987341772152, 0.10759493670886076, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.759493670886076, 0.8670886075949367, 0.6582278481012658, 0.5316455696202531, 0.3860759493670886, 0.13924050632911392, 0.06962025316455696, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.02531645569620253, 0.04430379746835443, 0.12025316455696203, 0.3860759493670886], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PapD_N.gap.json b/pfam_gap_rates/PapD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..637182fa3b2736cfd8f5110d157b5bc5b0744be2
--- /dev/null
+++ b/pfam_gap_rates/PapD_N.gap.json
@@ -0,0 +1 @@
+{"family": "PapD_N", "n_seqs": 311, "length": 142, "gap_rates": [0.7588424437299035, 0.3054662379421222, 0.2733118971061093, 0.24758842443729903, 0.24115755627009647, 0.21864951768488747, 0.21543408360128619, 0.2090032154340836, 0.19935691318327975, 0.16720257234726688, 0.13504823151125403, 0.13504823151125403, 0.10932475884244373, 0.09003215434083602, 0.0707395498392283, 0.06109324758842444, 0.05144694533762058, 0.04823151125401929, 0.04501607717041801, 0.04180064308681672, 0.04180064308681672, 0.04180064308681672, 0.04180064308681672, 0.04180064308681672, 0.04180064308681672, 0.04180064308681672, 0.04823151125401929, 0.7877813504823151, 0.04501607717041801, 0.03858520900321544, 0.03858520900321544, 0.03858520900321544, 0.03858520900321544, 0.03858520900321544, 0.03858520900321544, 0.03858520900321544, 0.04180064308681672, 0.04180064308681672, 0.04180064308681672, 0.8553054662379421, 0.9485530546623794, 0.932475884244373, 0.6012861736334405, 0.3054662379421222, 0.3086816720257235, 0.31189710610932475, 0.3408360128617363, 0.9131832797427653, 0.3054662379421222, 0.08360128617363344, 0.06752411575562701, 0.05144694533762058, 0.9421221864951769, 0.03858520900321544, 0.03215434083601286, 0.03215434083601286, 0.04180064308681672, 0.40836012861736337, 0.03858520900321544, 0.028938906752411574, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.028938906752411574, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.022508038585209004, 0.022508038585209004, 0.022508038585209004, 0.022508038585209004, 0.6141479099678456, 0.022508038585209004, 0.02572347266881029, 0.8778135048231511, 0.45016077170418006, 0.04823151125401929, 0.03858520900321544, 0.05144694533762058, 0.21543408360128619, 0.06109324758842444, 0.04501607717041801, 0.022508038585209004, 0.02572347266881029, 0.02572347266881029, 0.028938906752411574, 0.01929260450160772, 0.01607717041800643, 0.01607717041800643, 0.012861736334405145, 0.012861736334405145, 0.012861736334405145, 0.012861736334405145, 0.012861736334405145, 0.01929260450160772, 0.01929260450160772, 0.01929260450160772, 0.01929260450160772, 0.022508038585209004, 0.864951768488746, 0.9453376205787781, 0.9228295819935691, 0.8231511254019293, 0.38263665594855306, 0.4983922829581994, 0.8553054662379421, 0.932475884244373, 0.9035369774919614, 0.7813504823151125, 0.3054662379421222, 0.07395498392282958, 0.05787781350482315, 0.04180064308681672, 0.04501607717041801, 0.04501607717041801, 0.04823151125401929, 0.04823151125401929, 0.05787781350482315, 0.06109324758842444, 0.06430868167202572, 0.07395498392282958, 0.08360128617363344, 0.09003215434083602, 0.0932475884244373, 0.09967845659163987, 0.10932475884244373, 0.1189710610932476, 0.1382636655948553, 0.18006430868167203, 0.24115755627009647, 0.2861736334405145, 0.3504823151125402, 0.4533762057877814, 0.9453376205787781], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PcrB.gap.json b/pfam_gap_rates/PcrB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a02a5213bcbcf52c1f364f5c26517712bd27ea9a
--- /dev/null
+++ b/pfam_gap_rates/PcrB.gap.json
@@ -0,0 +1 @@
+{"family": "PcrB", "n_seqs": 272, "length": 245, "gap_rates": [0.8602941176470589, 0.6764705882352942, 0.5441176470588235, 0.49264705882352944, 0.4117647058823529, 0.3602941176470588, 0.25735294117647056, 0.8860294117647058, 0.9154411764705882, 0.8161764705882353, 0.15441176470588236, 0.125, 0.058823529411764705, 0.04044117647058824, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03308823529411765, 0.03676470588235294, 0.029411764705882353, 0.025735294117647058, 0.025735294117647058, 0.9301470588235294, 0.029411764705882353, 0.03308823529411765, 0.03308823529411765, 0.029411764705882353, 0.025735294117647058, 0.029411764705882353, 0.7352941176470589, 0.7536764705882353, 0.7352941176470589, 0.058823529411764705, 0.04411764705882353, 0.022058823529411766, 0.022058823529411766, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Pep3_Vps18.gap.json b/pfam_gap_rates/Pep3_Vps18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b56d9b7d6d0d85878224e3de7d934bb20c436a3
--- /dev/null
+++ b/pfam_gap_rates/Pep3_Vps18.gap.json
@@ -0,0 +1 @@
+{"family": "Pep3_Vps18", "n_seqs": 319, "length": 185, "gap_rates": [0.38557993730407525, 0.36990595611285265, 0.3573667711598746, 0.34169278996865204, 0.3385579937304075, 0.335423197492163, 0.335423197492163, 0.32601880877742945, 0.329153605015674, 0.799373040752351, 0.9341692789968652, 0.8934169278996865, 0.7178683385579937, 0.39184952978056425, 0.4263322884012539, 0.4043887147335423, 0.27899686520376177, 0.6865203761755486, 0.7586206896551724, 0.9467084639498433, 0.7492163009404389, 0.6363636363636364, 0.2476489028213166, 0.23824451410658307, 0.21630094043887146, 0.20376175548589343, 0.1974921630094044, 0.19122257053291536, 0.18808777429467086, 0.1786833855799373, 0.1755485893416928, 0.1755485893416928, 0.1724137931034483, 0.16927899686520376, 0.16614420062695925, 0.16614420062695925, 0.16300940438871472, 0.54858934169279, 0.6269592476489029, 0.6833855799373041, 0.786833855799373, 0.9247648902821317, 0.9467084639498433, 0.9122257053291536, 0.7147335423197492, 0.6363636363636364, 0.6081504702194357, 0.4952978056426332, 0.3981191222570533, 0.2852664576802508, 0.1974921630094044, 0.15047021943573669, 0.11912225705329153, 0.10344827586206896, 0.09404388714733543, 0.07836990595611286, 0.07523510971786834, 0.07523510971786834, 0.07210031347962383, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.05956112852664577, 0.05956112852664577, 0.05956112852664577, 0.05642633228840126, 0.05956112852664577, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06583072100313479, 0.08150470219435736, 0.06896551724137931, 0.06583072100313479, 0.06583072100313479, 0.06583072100313479, 0.05642633228840126, 0.8526645768025078, 0.9435736677115988, 0.9467084639498433, 0.8808777429467085, 0.774294670846395, 0.36990595611285265, 0.109717868338558, 0.08463949843260188, 0.07836990595611286, 0.07836990595611286, 0.4043887147335423, 0.05329153605015674, 0.05329153605015674, 0.05329153605015674, 0.050156739811912224, 0.047021943573667714, 0.047021943573667714, 0.047021943573667714, 0.050156739811912224, 0.0438871473354232, 0.047021943573667714, 0.047021943573667714, 0.03761755485893417, 0.03761755485893417, 0.03761755485893417, 0.03761755485893417, 0.03761755485893417, 0.04075235109717868, 0.03761755485893417, 0.03761755485893417, 0.03761755485893417, 0.03761755485893417, 0.03761755485893417, 0.03761755485893417, 0.02821316614420063, 0.025078369905956112, 0.02821316614420063, 0.02821316614420063, 0.02821316614420063, 0.02821316614420063, 0.02821316614420063, 0.025078369905956112, 0.025078369905956112, 0.02821316614420063, 0.025078369905956112, 0.0219435736677116, 0.03134796238244514, 0.03134796238244514, 0.0219435736677116, 0.0219435736677116, 0.0219435736677116, 0.025078369905956112, 0.02821316614420063, 0.9467084639498433, 0.9467084639498433, 0.9467084639498433, 0.9498432601880877, 0.9498432601880877, 0.9467084639498433, 0.9467084639498433, 0.9467084639498433, 0.03134796238244514, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.0438871473354232, 0.0438871473354232, 0.0438871473354232, 0.0438871473354232, 0.0438871473354232, 0.0438871473354232, 0.8934169278996865, 0.9435736677115988, 0.9404388714733543, 0.8683385579937304, 0.64576802507837, 0.05956112852664577, 0.05956112852664577, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06269592476489028, 0.06583072100313479, 0.07210031347962383, 0.07210031347962383, 0.07523510971786834, 0.07523510971786834, 0.07523510971786834, 0.08150470219435736, 0.08463949843260188, 0.0877742946708464, 0.09717868338557993, 0.13479623824451412, 0.7335423197492164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PepSY_TM_like_2.gap.json b/pfam_gap_rates/PepSY_TM_like_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..928ccf998a1c9a5fff492d6724defef4ac6d1a8b
--- /dev/null
+++ b/pfam_gap_rates/PepSY_TM_like_2.gap.json
@@ -0,0 +1 @@
+{"family": "PepSY_TM_like_2", "n_seqs": 152, "length": 211, "gap_rates": [0.6973684210526315, 0.40131578947368424, 0.34210526315789475, 0.29605263157894735, 0.26973684210526316, 0.2631578947368421, 0.2565789473684211, 0.25, 0.5394736842105263, 0.5394736842105263, 0.25, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23026315789473684, 0.21052631578947367, 0.17763157894736842, 0.13815789473684212, 0.125, 0.4342105263157895, 0.05263157894736842, 0.9407894736842105, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.03289473684210526, 0.8092105263157895, 0.03289473684210526, 0.039473684210526314, 0.039473684210526314, 0.03289473684210526, 0.046052631578947366, 0.046052631578947366, 0.039473684210526314, 0.05921052631578947, 0.05263157894736842, 0.05263157894736842, 0.06578947368421052, 0.07894736842105263, 0.07236842105263158, 0.06578947368421052, 0.07236842105263158, 0.07894736842105263, 0.3026315789473684, 0.3026315789473684, 0.2631578947368421, 0.23026315789473684, 0.17763157894736842, 0.14473684210526316, 0.13815789473684212, 0.10526315789473684, 0.09868421052631579, 0.13815789473684212, 0.125, 0.23684210526315788, 0.14473684210526316, 0.881578947368421, 0.9144736842105263, 0.9276315789473685, 0.8947368421052632, 0.868421052631579, 0.1118421052631579, 0.08552631578947369, 0.05921052631578947, 0.046052631578947366, 0.046052631578947366, 0.05921052631578947, 0.046052631578947366, 0.05263157894736842, 0.046052631578947366, 0.039473684210526314, 0.046052631578947366, 0.05921052631578947, 0.05921052631578947, 0.125, 0.09210526315789473, 0.09210526315789473, 0.06578947368421052, 0.05921052631578947, 0.06578947368421052, 0.07236842105263158, 0.07236842105263158, 0.05921052631578947, 0.9078947368421053, 0.13157894736842105, 0.07894736842105263, 0.07236842105263158, 0.07894736842105263, 0.9407894736842105, 0.9407894736842105, 0.9473684210526315, 0.9407894736842105, 0.9407894736842105, 0.05921052631578947, 0.05263157894736842, 0.05263157894736842, 0.046052631578947366, 0.039473684210526314, 0.046052631578947366, 0.039473684210526314, 0.05263157894736842, 0.09868421052631579, 0.17763157894736842, 0.17763157894736842, 0.16447368421052633, 0.125, 0.05263157894736842, 0.02631578947368421, 0.019736842105263157, 0.02631578947368421, 0.019736842105263157, 0.006578947368421052, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.013157894736842105, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.013157894736842105, 0.9276315789473685, 0.006578947368421052, 0.006578947368421052, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.039473684210526314, 0.17763157894736842, 0.11842105263157894, 0.013157894736842105, 0.02631578947368421, 0.03289473684210526, 0.013157894736842105, 0.006578947368421052, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006578947368421052, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.02631578947368421, 0.019736842105263157, 0.019736842105263157, 0.02631578947368421, 0.02631578947368421, 0.039473684210526314, 0.046052631578947366, 0.046052631578947366, 0.05263157894736842, 0.05263157894736842, 0.05921052631578947, 0.07894736842105263, 0.09210526315789473, 0.13157894736842105, 0.19078947368421054, 0.23026315789473684, 0.29605263157894735, 0.40131578947368424, 0.4407894736842105, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C15.gap.json b/pfam_gap_rates/Peptidase_C15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96600c65aae17299e75e07ee2f2d62fdbedabfe9
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C15.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C15", "n_seqs": 711, "length": 207, "gap_rates": [0.6694796061884669, 0.4008438818565401, 0.17580872011251758, 0.1589310829817159, 0.1518987341772152, 0.14345991561181434, 0.1420534458509142, 0.1420534458509142, 0.1420534458509142, 0.1420534458509142, 0.1420534458509142, 0.1420534458509142, 0.1420534458509142, 0.14064697609001406, 0.14064697609001406, 0.13924050632911392, 0.13783403656821377, 0.13783403656821377, 0.13783403656821377, 0.13783403656821377, 0.13783403656821377, 0.13783403656821377, 0.13642756680731363, 0.13642756680731363, 0.1350210970464135, 0.1350210970464135, 0.13642756680731363, 0.4092827004219409, 0.16877637130801687, 0.15330520393811534, 0.1490857946554149, 0.13783403656821377, 0.9451476793248945, 0.13783403656821377, 0.1350210970464135, 0.939521800281294, 0.1308016877637131, 0.12658227848101267, 0.1209563994374121, 0.11954992967651196, 0.11954992967651196, 0.11954992967651196, 0.11251758087201125, 0.11392405063291139, 0.11673699015471167, 0.11533052039381153, 0.11392405063291139, 0.10829817158931083, 0.10689170182841069, 0.10548523206751055, 0.10548523206751055, 0.10829817158931083, 0.10829817158931083, 0.10970464135021098, 0.1111111111111111, 0.10829817158931083, 0.10970464135021098, 0.10407876230661041, 0.10407876230661041, 0.10548523206751055, 0.10267229254571027, 0.090014064697609, 0.08157524613220815, 0.07735583684950774, 0.07454289732770746, 0.06751054852320675, 0.06610407876230662, 0.06610407876230662, 0.06610407876230662, 0.06610407876230662, 0.07032348804500703, 0.07313642756680731, 0.06891701828410689, 0.06891701828410689, 0.07313642756680731, 0.07454289732770746, 0.06891701828410689, 0.07313642756680731, 0.07454289732770746, 0.06891701828410689, 0.06751054852320675, 0.07454289732770746, 0.07454289732770746, 0.08016877637130802, 0.09985935302390998, 0.10970464135021098, 0.10548523206751055, 0.10548523206751055, 0.11814345991561181, 0.11954992967651196, 0.939521800281294, 0.1490857946554149, 0.1631504922644163, 0.14767932489451477, 0.10829817158931083, 0.10548523206751055, 0.10689170182841069, 0.10970464135021098, 0.11392405063291139, 0.11814345991561181, 0.11533052039381153, 0.11533052039381153, 0.11392405063291139, 0.1111111111111111, 0.11392405063291139, 0.10970464135021098, 0.11673699015471167, 0.11954992967651196, 0.9479606188466948, 0.11533052039381153, 0.1209563994374121, 0.1209563994374121, 0.1209563994374121, 0.11954992967651196, 0.11814345991561181, 0.11673699015471167, 0.11392405063291139, 0.11392405063291139, 0.11251758087201125, 0.1111111111111111, 0.11251758087201125, 0.11251758087201125, 0.10829817158931083, 0.10407876230661041, 0.10267229254571027, 0.10126582278481013, 0.09985935302390998, 0.09985935302390998, 0.10407876230661041, 0.10548523206751055, 0.1111111111111111, 0.11251758087201125, 0.11251758087201125, 0.1111111111111111, 0.09845288326300984, 0.08860759493670886, 0.08720112517580872, 0.08720112517580872, 0.08720112517580872, 0.08720112517580872, 0.08720112517580872, 0.090014064697609, 0.09282700421940929, 0.09282700421940929, 0.09282700421940929, 0.09282700421940929, 0.09282700421940929, 0.09282700421940929, 0.09282700421940929, 0.09142053445850915, 0.09142053445850915, 0.09142053445850915, 0.09142053445850915, 0.09423347398030943, 0.10407876230661041, 0.12376933895921238, 0.14767932489451477, 0.1729957805907173, 0.21237693389592124, 0.2419127988748242, 0.24331926863572434, 0.28270042194092826, 0.2714486638537271, 0.20534458509142053, 0.1518987341772152, 0.13783403656821377, 0.12236286919831224, 0.11251758087201125, 0.11251758087201125, 0.11251758087201125, 0.11392405063291139, 0.11392405063291139, 0.13783403656821377, 0.19831223628691982, 0.2714486638537271, 0.360056258790436, 0.39662447257383965, 0.42756680731364277, 0.45288326300984527, 0.459915611814346, 0.469760900140647, 0.4838255977496484, 0.5428973277074542, 0.4936708860759494, 0.9071729957805907, 0.4866385372714487, 0.48241912798874825, 0.4880450070323488, 0.4908579465541491, 0.48945147679324896, 0.49226441631504925, 0.49226441631504925, 0.49226441631504925, 0.49226441631504925, 0.5007032348804501, 0.5035161744022504, 0.510548523206751, 0.5119549929676512, 0.5133614627285513, 0.5189873417721519, 0.5218002812939522, 0.530239099859353, 0.5428973277074542, 0.5752461322081576, 0.6258790436005626, 0.7271448663853727, 0.8860759493670886], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C1_2.gap.json b/pfam_gap_rates/Peptidase_C1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..195b8fb0f0104c704da210c9cea65d79924a77c0
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C1_2.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C1_2", "n_seqs": 767, "length": 456, "gap_rates": [0.9126466753585397, 0.485006518904824, 0.4471968709256845, 0.4198174706649283, 0.4067796610169492, 0.39895697522816165, 0.3898305084745763, 0.3833116036505867, 0.38070404172099087, 0.37809647979139505, 0.379400260756193, 0.3754889178617992, 0.3728813559322034, 0.37809647979139505, 0.3728813559322034, 0.37157757496740546, 0.3741851368970013, 0.36766623207301175, 0.3663624511082138, 0.3650586701434159, 0.3624511082138201, 0.36114732724902215, 0.35723598435462844, 0.35723598435462844, 0.35853976531942633, 0.35723598435462844, 0.35723598435462844, 0.3546284224250326, 0.3520208604954368, 0.3468057366362451, 0.3468057366362451, 0.34159061277705344, 0.3363754889178618, 0.33116036505867014, 0.3272490221642764, 0.3246414602346806, 0.3194263363754889, 0.31681877444589307, 0.31421121251629724, 0.31029986962190353, 0.30638852672750977, 0.30378096479791394, 0.29986962190352023, 0.2985658409387223, 0.29595827900912647, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C39.gap.json b/pfam_gap_rates/Peptidase_C39.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2256c1193d03d92468581def0bbd965fff9cd81
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C39.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C39", "n_seqs": 1136, "length": 144, "gap_rates": [0.6672535211267606, 0.5044014084507042, 0.40316901408450706, 0.34507042253521125, 0.31866197183098594, 0.3045774647887324, 0.28433098591549294, 0.25880281690140844, 0.2367957746478873, 0.19630281690140844, 0.1602112676056338, 0.1311619718309859, 0.11355633802816902, 0.09154929577464789, 0.08450704225352113, 0.07658450704225352, 0.07306338028169014, 0.07130281690140845, 0.0625, 0.05897887323943662, 0.056338028169014086, 0.05545774647887324, 0.05457746478873239, 0.8873239436619719, 0.056338028169014086, 0.05545774647887324, 0.0528169014084507, 0.051056338028169015, 0.05017605633802817, 0.05017605633802817, 0.04929577464788732, 0.04665492957746479, 0.04665492957746479, 0.045774647887323945, 0.045774647887323945, 0.04753521126760563, 0.04753521126760563, 0.043133802816901406, 0.05897887323943662, 0.07658450704225352, 0.05897887323943662, 0.05193661971830986, 0.045774647887323945, 0.040492957746478875, 0.03697183098591549, 0.030809859154929578, 0.027288732394366196, 0.025528169014084508, 0.022887323943661973, 0.022007042253521125, 0.020246478873239437, 0.020246478873239437, 0.020246478873239437, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.022007042253521125, 0.022007042253521125, 0.022007042253521125, 0.02464788732394366, 0.02464788732394366, 0.02640845070422535, 0.029049295774647887, 0.9269366197183099, 0.032570422535211266, 0.02992957746478873, 0.028169014084507043, 0.030809859154929578, 0.035211267605633804, 0.8441901408450704, 0.8996478873239436, 0.7059859154929577, 0.037852112676056336, 0.03609154929577465, 0.03697183098591549, 0.03433098591549296, 0.030809859154929578, 0.027288732394366196, 0.027288732394366196, 0.027288732394366196, 0.027288732394366196, 0.05721830985915493, 0.7931338028169014, 0.9375, 0.5765845070422535, 0.04137323943661972, 0.04225352112676056, 0.03873239436619718, 0.043133802816901406, 0.5757042253521126, 0.5387323943661971, 0.10915492957746478, 0.03433098591549296, 0.051056338028169015, 0.028169014084507043, 0.028169014084507043, 0.02992957746478873, 0.029049295774647887, 0.030809859154929578, 0.909330985915493, 0.8820422535211268, 0.030809859154929578, 0.03169014084507042, 0.03345070422535211, 0.032570422535211266, 0.03169014084507042, 0.032570422535211266, 0.032570422535211266, 0.03345070422535211, 0.03345070422535211, 0.035211267605633804, 0.9110915492957746, 0.8142605633802817, 0.03697183098591549, 0.03873239436619718, 0.040492957746478875, 0.040492957746478875, 0.0448943661971831, 0.04753521126760563, 0.04929577464788732, 0.04929577464788732, 0.0528169014084507, 0.05369718309859155, 0.05457746478873239, 0.056338028169014086, 0.061619718309859156, 0.06602112676056338, 0.06866197183098592, 0.07482394366197183, 0.13468309859154928, 0.9313380281690141, 0.18397887323943662, 0.21654929577464788, 0.238556338028169, 0.24471830985915494, 0.2579225352112676, 0.28080985915492956, 0.3265845070422535, 0.3767605633802817, 0.4709507042253521, 0.6919014084507042], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M10_C.gap.json b/pfam_gap_rates/Peptidase_M10_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a344188d59b502e3a8742424aea47be36fc7697b
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M10_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M17.gap.json b/pfam_gap_rates/Peptidase_M17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2e9fcd2da187b23f3560f25226eb6fb1c8caf65
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M17.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M35.gap.json b/pfam_gap_rates/Peptidase_M35.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4978ebd7fcb8b64ce6028300045715e4ae1ef4c
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M35.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M36.gap.json b/pfam_gap_rates/Peptidase_M36.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b74885830edb876ca137008f4a4c63ee7a6e6b4f
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M36.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M56.gap.json b/pfam_gap_rates/Peptidase_M56.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58d17f6d96d6c09c057f0ce4bf9f6d84fa05b0be
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M56.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S11.gap.json b/pfam_gap_rates/Peptidase_S11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d02d74fa614fe21ffd80d6691de099080c40762
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S11.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_U32.gap.json b/pfam_gap_rates/Peptidase_U32.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22f73f1f7b49448a4db8428505a0b1d7c4a0627e
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_U32.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_U32", "n_seqs": 2751, "length": 292, "gap_rates": [0.8353326063249727, 0.5387131952017448, 0.38386041439476554, 0.25663395129043987, 0.22609960014540167, 0.20283533260632497, 0.18247909850963287, 0.16648491457651762, 0.1573973100690658, 0.14685568884042166, 0.13922210105416213, 0.12904398400581607, 0.12322791712104689, 0.11886586695747, 0.11159578335150855, 0.10468920392584515, 0.1054162122864413, 0.09814612868047982, 0.08215194474736459, 0.07742639040348964, 0.07233733187931661, 0.0697928026172301, 0.06724827335514358, 0.06615776081424936, 0.06543075245365322, 0.06506724827335514, 0.064340239912759, 0.06361323155216285, 0.0628862231915667, 0.11377680843329699, 0.1134133042529989, 0.10905125408942203, 0.06252271901126863, 0.2559069429298437, 0.21701199563794984, 0.08142493638676845, 0.06252271901126863, 0.04398400581606689, 0.04143947655398037, 0.04034896401308615, 0.037804434750999635, 0.03525990548891312, 0.03198836786623046, 0.027626317702653582, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Peripla_BP_4.gap.json b/pfam_gap_rates/Peripla_BP_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..faa1f58f8361e2b4e408a59c0845b3999b721adb
--- /dev/null
+++ b/pfam_gap_rates/Peripla_BP_4.gap.json
@@ -0,0 +1 @@
+{"family": "Peripla_BP_4", "n_seqs": 5000, "length": 306, "gap_rates": [0.4878, 0.3666, 0.277, 0.2414, 0.2188, 0.1918, 0.16, 0.1382, 0.1188, 0.1092, 0.1024, 0.8272, 0.0908, 0.089, 0.0866, 0.1722, 0.0776, 0.0746, 0.071, 0.0676, 0.0658, 0.0652, 0.064, 0.0626, 0.0612, 0.0606, 0.06, 0.0612, 0.0592, 0.0582, 0.0622, 0.0596, 0.058, 0.0598, 0.3066, 0.8594, 0.9496, 0.8932, 0.6922, 0.2388, 0.0816, 0.0526, 0.0508, 0.05, 0.049, 0.0486, 0.0468, 0.046, 0.0456, 0.0446, 0.0444, 0.0434, 0.043, 0.0418, 0.0412, 0.0394, 0.0502, 0.0408, 0.0366, 0.0344, 0.033, 0.0324, 0.033, 0.0322, 0.0318, 0.0318, 0.0318, 0.0388, 0.0322, 0.0314, 0.0472, 0.049, 0.0396, 0.036, 0.0336, 0.0372, 0.0336, 0.0322, 0.0306, 0.0302, 0.0326, 0.0304, 0.0368, 0.0334, 0.055, 0.0332, 0.0302, 0.0278, 0.027, 0.0268, 0.0268, 0.0278, 0.0284, 0.0278, 0.768, 0.91, 0.8714, 0.7184, 0.5118, 0.1728, 0.0672, 0.04, 0.0276, 0.0262, 0.0264, 0.0264, 0.0214, 0.0236, 0.0206, 0.0202, 0.0202, 0.0198, 0.02, 0.02, 0.0204, 0.02, 0.0206, 0.02, 0.02, 0.02, 0.0198, 0.0202, 0.021, 0.0216, 0.0218, 0.0214, 0.022, 0.0214, 0.0218, 0.0576, 0.096, 0.7286, 0.8258, 0.9112, 0.9378, 0.9414, 0.93, 0.8814, 0.7732, 0.68, 0.5926, 0.051, 0.0312, 0.0208, 0.0212, 0.0312, 0.0248, 0.0982, 0.0256, 0.0254, 0.0244, 0.0256, 0.0216, 0.0226, 0.0238, 0.0228, 0.0334, 0.0398, 0.0202, 0.0198, 0.019, 0.0188, 0.0188, 0.0192, 0.0194, 0.0198, 0.0214, 0.0278, 0.026, 0.7822, 0.9186, 0.9378, 0.9478, 0.9452, 0.9286, 0.85, 0.6192, 0.2422, 0.1196, 0.8836, 0.0554, 0.0486, 0.0462, 0.0476, 0.0472, 0.0346, 0.8794, 0.9088, 0.9212, 0.9472, 0.9124, 0.9046, 0.8358, 0.2192, 0.331, 0.136, 0.068, 0.2566, 0.0292, 0.0238, 0.0226, 0.0216, 0.0204, 0.0212, 0.0204, 0.0206, 0.0202, 0.0268, 0.0204, 0.0198, 0.0196, 0.019, 0.019, 0.0192, 0.8412, 0.9316, 0.7978, 0.0204, 0.0576, 0.7454, 0.0764, 0.8764, 0.9278, 0.3336, 0.0222, 0.0192, 0.0188, 0.019, 0.0222, 0.0266, 0.022, 0.0278, 0.0226, 0.0192, 0.0196, 0.0238, 0.0268, 0.0866, 0.023, 0.021, 0.0202, 0.0198, 0.02, 0.02, 0.0202, 0.0494, 0.046, 0.0866, 0.8912, 0.8232, 0.0868, 0.0842, 0.0684, 0.1132, 0.2216, 0.89, 0.9348, 0.8452, 0.026, 0.026, 0.0264, 0.0266, 0.0272, 0.0286, 0.03, 0.0318, 0.0328, 0.0336, 0.0354, 0.036, 0.0366, 0.037, 0.038, 0.0386, 0.0384, 0.0394, 0.0534, 0.0488, 0.9466, 0.9118, 0.0816, 0.053, 0.0566, 0.062, 0.0656, 0.0688, 0.0686, 0.0712, 0.1212, 0.0908, 0.0764, 0.0782, 0.0796, 0.081, 0.084, 0.0884, 0.0938, 0.1, 0.1092, 0.1296, 0.1522, 0.1998, 0.245, 0.3178, 0.432, 0.795], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peripla_BP_5.gap.json b/pfam_gap_rates/Peripla_BP_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d876bb1f1491d1414ac924596d5f3cc0f6bea2be
--- /dev/null
+++ b/pfam_gap_rates/Peripla_BP_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peripla_BP_6.gap.json b/pfam_gap_rates/Peripla_BP_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0e831ffd031b62fec50ed021d5d26607eeaf7bd
--- /dev/null
+++ b/pfam_gap_rates/Peripla_BP_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pex2_Pex12.gap.json b/pfam_gap_rates/Pex2_Pex12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..afa8bc469c51f09b467b4a349d24f879ebc6b1a3
--- /dev/null
+++ b/pfam_gap_rates/Pex2_Pex12.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PhaC_N.gap.json b/pfam_gap_rates/PhaC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ece1d7d389ebe16f1866c970cbd26b2ac83f0fdd
--- /dev/null
+++ b/pfam_gap_rates/PhaC_N.gap.json
@@ -0,0 +1 @@
+{"family": "PhaC_N", "n_seqs": 510, "length": 173, "gap_rates": [0.45294117647058824, 0.03725490196078431, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03725490196078431, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03725490196078431, 0.043137254901960784, 0.03333333333333333, 0.03137254901960784, 0.2803921568627451, 0.03137254901960784, 0.03137254901960784, 0.03333333333333333, 0.027450980392156862, 0.029411764705882353, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.029411764705882353, 0.027450980392156862, 0.029411764705882353, 0.03333333333333333, 0.027450980392156862, 0.027450980392156862, 0.029411764705882353, 0.2627450980392157, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.027450980392156862, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.025490196078431372, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.049019607843137254, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.025490196078431372, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.307843137254902, 0.30980392156862746, 0.5705882352941176, 0.5529411764705883, 0.03137254901960784, 0.021568627450980392, 0.021568627450980392, 0.021568627450980392, 0.0196078431372549, 0.01764705882352941, 0.023529411764705882, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01568627450980392, 0.013725490196078431, 0.00980392156862745, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.00980392156862745, 0.00784313725490196, 0.00980392156862745, 0.00980392156862745, 0.011764705882352941, 0.00784313725490196, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.01764705882352941, 0.13333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_GP20.gap.json b/pfam_gap_rates/Phage_GP20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..137618a0bfe34d85742499dab2ac2b806ef4f9f7
--- /dev/null
+++ b/pfam_gap_rates/Phage_GP20.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_GP20", "n_seqs": 137, "length": 167, "gap_rates": [0.5912408759124088, 0.5328467153284672, 0.45985401459854014, 0.39416058394160586, 0.3284671532846715, 0.29927007299270075, 0.29927007299270075, 0.9416058394160584, 0.948905109489051, 0.9416058394160584, 0.6642335766423357, 0.2116788321167883, 0.18248175182481752, 0.145985401459854, 0.13138686131386862, 0.10948905109489052, 0.10948905109489052, 0.10948905109489052, 0.9343065693430657, 0.9343065693430657, 0.948905109489051, 0.9343065693430657, 0.9343065693430657, 0.9343065693430657, 0.10948905109489052, 0.6642335766423357, 0.9197080291970803, 0.927007299270073, 0.9124087591240876, 0.6058394160583942, 0.11678832116788321, 0.11678832116788321, 0.10948905109489052, 0.145985401459854, 0.18248175182481752, 0.15328467153284672, 0.15328467153284672, 0.1386861313868613, 0.10948905109489052, 0.10218978102189781, 0.10218978102189781, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.06569343065693431, 0.058394160583941604, 0.06569343065693431, 0.06569343065693431, 0.06569343065693431, 0.06569343065693431, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.058394160583941604, 0.058394160583941604, 0.058394160583941604, 0.058394160583941604, 0.06569343065693431, 0.06569343065693431, 0.072992700729927, 0.072992700729927, 0.41605839416058393, 0.36496350364963503, 0.10218978102189781, 0.08759124087591241, 0.06569343065693431, 0.06569343065693431, 0.06569343065693431, 0.06569343065693431, 0.06569343065693431, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.06569343065693431, 0.06569343065693431, 0.051094890510948905, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.16058394160583941, 0.1678832116788321, 0.1678832116788321, 0.1678832116788321, 0.043795620437956206, 0.051094890510948905, 0.072992700729927, 0.06569343065693431, 0.072992700729927, 0.072992700729927, 0.051094890510948905, 0.043795620437956206, 0.0364963503649635, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.021897810218978103, 0.18248175182481752, 0.0364963503649635, 0.014598540145985401, 0.021897810218978103, 0.014598540145985401, 0.021897810218978103, 0.021897810218978103, 0.0364963503649635, 0.029197080291970802, 0.021897810218978103, 0.014598540145985401, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.8978102189781022, 0.927007299270073, 0.8248175182481752, 0.043795620437956206, 0.043795620437956206, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.1897810218978102, 0.029197080291970802, 0.029197080291970802, 0.30656934306569344, 0.072992700729927, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.0364963503649635, 0.058394160583941604, 0.058394160583941604, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.8613138686131386, 0.8540145985401459, 0.0364963503649635, 0.043795620437956206, 0.058394160583941604, 0.058394160583941604, 0.072992700729927, 0.0948905109489051, 0.1386861313868613, 0.21897810218978103, 0.29927007299270075, 0.3357664233576642, 0.3722627737226277, 0.4233576642335766, 0.5182481751824818, 0.6642335766423357, 0.7883211678832117, 0.8540145985401459, 0.8832116788321168], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_GPA.gap.json b/pfam_gap_rates/Phage_GPA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc81ee086b47fad5e5bc33346373521e8a8f38c8
--- /dev/null
+++ b/pfam_gap_rates/Phage_GPA.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_GPA", "n_seqs": 108, "length": 449, "gap_rates": [0.6666666666666666, 0.6388888888888888, 0.6018518518518519, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5740740740740741, 0.5740740740740741, 0.5740740740740741, 0.5740740740740741, 0.5740740740740741, 0.5648148148148148, 0.5648148148148148, 0.5648148148148148, 0.5555555555555556, 0.5555555555555556, 0.5555555555555556, 0.9351851851851852, 0.9444444444444444, 0.9444444444444444, 0.9351851851851852, 0.8611111111111112, 0.8148148148148148, 0.7870370370370371, 0.75, 0.7407407407407407, 0.7407407407407407, 0.7407407407407407, 0.7407407407407407, 0.7407407407407407, 0.7407407407407407, 0.7314814814814815, 0.7407407407407407, 0.5185185185185185, 0.49074074074074076, 0.4722222222222222, 0.4722222222222222, 0.46296296296296297, 0.42592592592592593, 0.42592592592592593, 0.42592592592592593, 0.42592592592592593, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_TAC_7.gap.json b/pfam_gap_rates/Phage_TAC_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fad3278eb9ab105f330b739ffc3b4a739f222e3
--- /dev/null
+++ b/pfam_gap_rates/Phage_TAC_7.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_TAC_7", "n_seqs": 170, "length": 104, "gap_rates": [0.5470588235294118, 0.12941176470588237, 0.11764705882352941, 0.09411764705882353, 0.08823529411764706, 0.07058823529411765, 0.058823529411764705, 0.8588235294117647, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.041176470588235294, 0.041176470588235294, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0, 0.0, 0.9, 0.8823529411764706, 0.023529411764705882, 0.023529411764705882, 0.01764705882352941, 0.0058823529411764705, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.8235294117647058, 0.8941176470588236, 0.9470588235294117, 0.9176470588235294, 0.8823529411764706, 0.8117647058823529, 0.7823529411764706, 0.4647058823529412, 0.4588235294117647, 0.20588235294117646, 0.12941176470588237, 0.14705882352941177, 0.15294117647058825, 0.11176470588235295, 0.9058823529411765, 0.9294117647058824, 0.8764705882352941, 0.029411764705882353, 0.06470588235294118, 0.06470588235294118, 0.6941176470588235, 0.711764705882353, 0.6882352941176471, 0.6588235294117647, 0.058823529411764705, 0.01764705882352941, 0.8352941176470589, 0.8588235294117647, 0.9470588235294117, 0.8764705882352941, 0.8588235294117647, 0.8235294117647058, 0.0058823529411764705, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.711764705882353, 0.6235294117647059, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0058823529411764705, 0.011764705882352941, 0.011764705882352941, 0.01764705882352941, 0.023529411764705882, 0.029411764705882353, 0.029411764705882353, 0.03529411764705882, 0.052941176470588235, 0.058823529411764705, 0.07058823529411765, 0.08823529411764706, 0.12352941176470589, 0.15294117647058825, 0.3], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_capsid.gap.json b/pfam_gap_rates/Phage_capsid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..542eb0b50dea1574e7958ba3a18c2f669d8fa4c7
--- /dev/null
+++ b/pfam_gap_rates/Phage_capsid.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_holin_3_6.gap.json b/pfam_gap_rates/Phage_holin_3_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecf3600731c2fd02dea3f8e99d3ed5a38c8f0c14
--- /dev/null
+++ b/pfam_gap_rates/Phage_holin_3_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phycobilisome.gap.json b/pfam_gap_rates/Phycobilisome.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a30d184b5388a3600d19e90be9535a6836fda5e
--- /dev/null
+++ b/pfam_gap_rates/Phycobilisome.gap.json
@@ -0,0 +1 @@
+{"family": "Phycobilisome", "n_seqs": 675, "length": 170, "gap_rates": [0.8088888888888889, 0.2725925925925926, 0.23851851851851852, 0.2325925925925926, 0.22074074074074074, 0.2, 0.17185185185185184, 0.1437037037037037, 0.1274074074074074, 0.12444444444444444, 0.12296296296296297, 0.12148148148148148, 0.12, 0.12296296296296297, 0.1288888888888889, 0.12444444444444444, 0.11851851851851852, 0.11555555555555555, 0.11555555555555555, 0.11259259259259259, 0.1111111111111111, 0.11703703703703704, 0.11555555555555555, 0.11259259259259259, 0.10814814814814815, 0.10666666666666667, 0.10666666666666667, 0.10814814814814815, 0.10962962962962963, 0.10814814814814815, 0.10666666666666667, 0.10222222222222223, 0.09925925925925926, 0.09925925925925926, 0.09925925925925926, 0.09925925925925926, 0.09925925925925926, 0.09925925925925926, 0.09925925925925926, 0.09777777777777778, 0.09777777777777778, 0.09777777777777778, 0.09777777777777778, 0.09777777777777778, 0.09777777777777778, 0.09777777777777778, 0.0962962962962963, 0.0962962962962963, 0.09777777777777778, 0.0962962962962963, 0.09777777777777778, 0.09925925925925926, 0.10074074074074074, 0.10222222222222223, 0.13925925925925925, 0.27555555555555555, 0.18666666666666668, 0.1925925925925926, 0.19407407407407407, 0.21185185185185185, 0.2162962962962963, 0.21037037037037037, 0.20592592592592593, 0.21037037037037037, 0.21037037037037037, 0.21185185185185185, 0.2696296296296296, 0.2162962962962963, 0.21185185185185185, 0.17037037037037037, 0.13037037037037036, 0.12444444444444444, 0.9066666666666666, 0.9066666666666666, 0.11851851851851852, 0.11407407407407408, 0.10074074074074074, 0.10074074074074074, 0.10074074074074074, 0.10074074074074074, 0.10074074074074074, 0.09925925925925926, 0.09925925925925926, 0.09925925925925926, 0.09777777777777778, 0.09777777777777778, 0.09777777777777778, 0.0962962962962963, 0.0962962962962963, 0.0962962962962963, 0.0962962962962963, 0.0962962962962963, 0.0962962962962963, 0.0962962962962963, 0.09481481481481481, 0.09481481481481481, 0.09481481481481481, 0.09481481481481481, 0.09481481481481481, 0.09481481481481481, 0.09333333333333334, 0.09333333333333334, 0.09925925925925926, 0.15259259259259259, 0.11407407407407408, 0.09481481481481481, 0.0962962962962963, 0.09481481481481481, 0.09481481481481481, 0.09481481481481481, 0.09481481481481481, 0.09481481481481481, 0.10074074074074074, 0.09925925925925926, 0.1037037037037037, 0.17925925925925926, 0.11259259259259259, 0.11259259259259259, 0.11259259259259259, 0.1259259259259259, 0.11851851851851852, 0.11703703703703704, 0.11555555555555555, 0.12296296296296297, 0.15851851851851853, 0.11407407407407408, 0.11259259259259259, 0.11259259259259259, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11259259259259259, 0.11259259259259259, 0.11259259259259259, 0.11259259259259259, 0.22518518518518518, 0.22666666666666666, 0.11703703703703704, 0.11703703703703704, 0.11703703703703704, 0.11851851851851852, 0.9007407407407407, 0.9377777777777778, 0.8962962962962963, 0.13185185185185186, 0.1274074074074074, 0.7911111111111111, 0.8385185185185186, 0.8444444444444444, 0.8444444444444444, 0.8444444444444444, 0.8444444444444444, 0.8444444444444444, 0.8429629629629629, 0.8325925925925926, 0.7851851851851852, 0.1259259259259259, 0.12444444444444444, 0.1259259259259259, 0.1274074074074074, 0.1274074074074074, 0.1288888888888889, 0.1348148148148148, 0.14814814814814814, 0.16, 0.17629629629629628, 0.18814814814814815, 0.19555555555555557, 0.2651851851851852, 0.45185185185185184], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pil1.gap.json b/pfam_gap_rates/Pil1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18058f4e01a0ee15d91f498f5cad893b4bc94286
--- /dev/null
+++ b/pfam_gap_rates/Pil1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PilM_2.gap.json b/pfam_gap_rates/PilM_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5b7055035e0383d5b27216b8f6051dd987bba3a
--- /dev/null
+++ b/pfam_gap_rates/PilM_2.gap.json
@@ -0,0 +1 @@
+{"family": "PilM_2", "n_seqs": 1483, "length": 350, "gap_rates": [0.35670937289278487, 0.279838165879973, 0.26365475387727577, 0.25016857720836144, 0.24747134187457856, 0.24409979770734996, 0.24072825354012137, 0.2339851652056642, 0.2299393122049899, 0.22791638570465272, 0.22387053270397841, 0.2198246797033041, 0.21645313553607554, 0.21510451786918408, 0.21645313553607554, 0.2198246797033041, 0.8792987188132164, 0.22859069453809844, 0.22454484153742413, 0.22387053270397841, 0.21443020903573837, 0.21240728253540123, 0.20364126770060686, 0.1968981793661497, 0.19554956169925827, 0.19959541469993258, 0.19150370869858396, 0.19150370869858396, 0.19150370869858396, 0.18880647336480108, 0.18543492919757248, 0.18476062036412677, 0.18408631153068106, 0.1894807821982468, 0.18880647336480108, 0.1894807821982468, 0.25151719487525287, 0.22589345920431558, 0.21105866486850977, 0.200944032366824, 0.20161834120026972, 0.19420094403236682, 0.18476062036412677, 0.17666891436277815, 0.17397167902899527, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PilO.gap.json b/pfam_gap_rates/PilO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e694bd68df485da785c7f51ef1b90a62b34b24a3
--- /dev/null
+++ b/pfam_gap_rates/PilO.gap.json
@@ -0,0 +1 @@
+{"family": "PilO", "n_seqs": 664, "length": 159, "gap_rates": [0.7198795180722891, 0.6144578313253012, 0.5286144578313253, 0.42771084337349397, 0.37801204819277107, 0.338855421686747, 0.3192771084337349, 0.29819277108433734, 0.25903614457831325, 0.2394578313253012, 0.21536144578313254, 0.1927710843373494, 0.18072289156626506, 0.1746987951807229, 0.15963855421686746, 0.14909638554216867, 0.13704819277108435, 0.13253012048192772, 0.12349397590361445, 0.1144578313253012, 0.11144578313253012, 0.11295180722891567, 0.10692771084337349, 0.10240963855421686, 0.09337349397590361, 0.08734939759036145, 0.08433734939759036, 0.08433734939759036, 0.0783132530120482, 0.07981927710843373, 0.0783132530120482, 0.07379518072289157, 0.06927710843373494, 0.0677710843373494, 0.060240963855421686, 0.058734939759036146, 0.05572289156626506, 0.05271084337349398, 0.04969879518072289, 0.04819277108433735, 0.05120481927710843, 0.04819277108433735, 0.05120481927710843, 0.046686746987951805, 0.043674698795180725, 0.04216867469879518, 0.043674698795180725, 0.04216867469879518, 0.0391566265060241, 0.0391566265060241, 0.0391566265060241, 0.04066265060240964, 0.04066265060240964, 0.04066265060240964, 0.04066265060240964, 0.0391566265060241, 0.03765060240963856, 0.03614457831325301, 0.03463855421686747, 0.03614457831325301, 0.03614457831325301, 0.03463855421686747, 0.03463855421686747, 0.03463855421686747, 0.03313253012048193, 0.03162650602409638, 0.03313253012048193, 0.03162650602409638, 0.03313253012048193, 0.03162650602409638, 0.030120481927710843, 0.03162650602409638, 0.03162650602409638, 0.0286144578313253, 0.02710843373493976, 0.02710843373493976, 0.03463855421686747, 0.04066265060240964, 0.0391566265060241, 0.04216867469879518, 0.8599397590361446, 0.9141566265060241, 0.9367469879518072, 0.9442771084337349, 0.9382530120481928, 0.9292168674698795, 0.9066265060240963, 0.8313253012048193, 0.043674698795180725, 0.046686746987951805, 0.04969879518072289, 0.04969879518072289, 0.045180722891566265, 0.0391566265060241, 0.03765060240963856, 0.03765060240963856, 0.03313253012048193, 0.03162650602409638, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.0286144578313253, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.03463855421686747, 0.03765060240963856, 0.04216867469879518, 0.043674698795180725, 0.05572289156626506, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05572289156626506, 0.05572289156626506, 0.05421686746987952, 0.05572289156626506, 0.05572289156626506, 0.0572289156626506, 0.058734939759036146, 0.06626506024096386, 0.07228915662650602, 0.08132530120481928, 0.09337349397590361, 0.6219879518072289, 0.8614457831325302, 0.9141566265060241, 0.9352409638554217, 0.8930722891566265, 0.8087349397590361, 0.5331325301204819, 0.411144578313253, 0.34036144578313254, 0.22740963855421686, 0.18825301204819278, 0.2003012048192771, 0.21536144578313254, 0.22740963855421686, 0.23795180722891565, 0.2620481927710843, 0.2756024096385542, 0.30271084337349397, 0.3177710843373494, 0.33433734939759036, 0.4608433734939759, 0.5406626506024096, 0.6189759036144579, 0.7906626506024096], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PilX.gap.json b/pfam_gap_rates/PilX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a80452921c7fa2096a8c7315f07bf1d64f7b5f4
--- /dev/null
+++ b/pfam_gap_rates/PilX.gap.json
@@ -0,0 +1 @@
+{"family": "PilX", "n_seqs": 110, "length": 170, "gap_rates": [0.9454545454545454, 0.7181818181818181, 0.6, 0.5545454545454546, 0.5181818181818182, 0.509090909090909, 0.5, 0.4909090909090909, 0.4818181818181818, 0.4727272727272727, 0.4727272727272727, 0.4636363636363636, 0.4727272727272727, 0.4909090909090909, 0.6181818181818182, 0.6818181818181818, 0.44545454545454544, 0.5, 0.5636363636363636, 0.6090909090909091, 0.7, 0.7727272727272727, 0.8, 0.8545454545454545, 0.8909090909090909, 0.9272727272727272, 0.9454545454545454, 0.9454545454545454, 0.9454545454545454, 0.9454545454545454, 0.9181818181818182, 0.8727272727272727, 0.8181818181818182, 0.7727272727272727, 0.7181818181818181, 0.6636363636363637, 0.5818181818181818, 0.5181818181818182, 0.4909090909090909, 0.07272727272727272, 0.07272727272727272, 0.05454545454545454, 0.36363636363636365, 0.41818181818181815, 0.5, 0.6, 0.6909090909090909, 0.7181818181818181, 0.7181818181818181, 0.7454545454545455, 0.8181818181818182, 0.9363636363636364, 0.9454545454545454, 0.9454545454545454, 0.9090909090909091, 0.7636363636363637, 0.7272727272727273, 0.7181818181818181, 0.7, 0.6545454545454545, 0.5727272727272728, 0.4727272727272727, 0.39090909090909093, 0.32727272727272727, 0.23636363636363636, 0.2909090909090909, 0.23636363636363636, 0.13636363636363635, 0.12727272727272726, 0.11818181818181818, 0.11818181818181818, 0.1, 0.08181818181818182, 0.09090909090909091, 0.08181818181818182, 0.08181818181818182, 0.09090909090909091, 0.09090909090909091, 0.07272727272727272, 0.045454545454545456, 0.8, 0.8272727272727273, 0.8636363636363636, 0.8727272727272727, 0.9, 0.9272727272727272, 0.9272727272727272, 0.9272727272727272, 0.9454545454545454, 0.9454545454545454, 0.9272727272727272, 0.9272727272727272, 0.9, 0.8909090909090909, 0.8727272727272727, 0.8363636363636363, 0.8181818181818182, 0.7818181818181819, 0.045454545454545456, 0.02727272727272727, 0.9181818181818182, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.9181818181818182, 0.9272727272727272, 0.9181818181818182, 0.0, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.01818181818181818, 0.05454545454545454, 0.07272727272727272, 0.09090909090909091, 0.6090909090909091, 0.7090909090909091, 0.7818181818181819, 0.8181818181818182, 0.9, 0.9181818181818182, 0.9090909090909091, 0.8727272727272727, 0.8, 0.7727272727272727, 0.6818181818181818, 0.5818181818181818, 0.43636363636363634, 0.38181818181818183, 0.33636363636363636, 0.2909090909090909, 0.24545454545454545, 0.19090909090909092, 0.19090909090909092, 0.14545454545454545, 0.06363636363636363, 0.02727272727272727, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.05454545454545454, 0.9272727272727272, 0.9363636363636364, 0.9272727272727272, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.01818181818181818, 0.045454545454545456, 0.19090909090909092, 0.6727272727272727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pinin_SDK_memA.gap.json b/pfam_gap_rates/Pinin_SDK_memA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da512c7aa937bfc4550cd070e709cd1e594151a8
--- /dev/null
+++ b/pfam_gap_rates/Pinin_SDK_memA.gap.json
@@ -0,0 +1 @@
+{"family": "Pinin_SDK_memA", "n_seqs": 275, "length": 144, "gap_rates": [0.7890909090909091, 0.4109090909090909, 0.24727272727272728, 0.12363636363636364, 0.09818181818181818, 0.08727272727272728, 0.08727272727272728, 0.07272727272727272, 0.07272727272727272, 0.05454545454545454, 0.05090909090909091, 0.05090909090909091, 0.04727272727272727, 0.04727272727272727, 0.04363636363636364, 0.8618181818181818, 0.04, 0.04, 0.04, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.19636363636363635, 0.04727272727272727, 0.03272727272727273, 0.03636363636363636, 0.5927272727272728, 0.92, 0.9054545454545454, 0.5672727272727273, 0.2581818181818182, 0.24, 0.2290909090909091, 0.21818181818181817, 0.04, 0.03636363636363636, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.02909090909090909, 0.02909090909090909, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.5309090909090909, 0.5309090909090909, 0.5163636363636364, 0.4909090909090909, 0.03636363636363636, 0.06545454545454546, 0.05818181818181818, 0.07272727272727272, 0.04727272727272727, 0.04, 0.04, 0.03272727272727273, 0.02909090909090909, 0.025454545454545455, 0.02181818181818182, 0.025454545454545455, 0.02909090909090909, 0.03272727272727273, 0.03636363636363636, 0.04, 0.03636363636363636, 0.03272727272727273, 0.3709090909090909, 0.3490909090909091, 0.32, 0.8836363636363637, 0.8909090909090909, 0.9054545454545454, 0.9018181818181819, 0.8872727272727273, 0.8763636363636363, 0.05090909090909091, 0.05818181818181818, 0.06545454545454546, 0.10545454545454545, 0.4581818181818182, 0.4218181818181818, 0.3781818181818182, 0.3781818181818182, 0.9345454545454546, 0.9381818181818182, 0.9127272727272727, 0.3490909090909091, 0.09090909090909091, 0.07272727272727272, 0.07272727272727272, 0.06181818181818182, 0.06181818181818182, 0.06181818181818182, 0.05818181818181818, 0.05818181818181818, 0.06181818181818182, 0.06909090909090909, 0.06545454545454546, 0.06545454545454546, 0.06545454545454546, 0.06181818181818182, 0.06181818181818182, 0.08727272727272728, 0.10181818181818182, 0.11636363636363636, 0.14545454545454545, 0.13454545454545455, 0.14909090909090908, 0.15272727272727274, 0.15272727272727274, 0.16, 0.16727272727272727, 0.1709090909090909, 0.16727272727272727, 0.16727272727272727, 0.17454545454545456, 0.18181818181818182, 0.1781818181818182, 0.18545454545454546, 0.18545454545454546, 0.18545454545454546, 0.19272727272727272, 0.19272727272727272, 0.2, 0.20727272727272728, 0.2109090909090909, 0.24, 0.2727272727272727, 0.43272727272727274, 0.84], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PmbA_TldD.gap.json b/pfam_gap_rates/PmbA_TldD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ca288e63734a499d520df407ff94fa3f895021a
--- /dev/null
+++ b/pfam_gap_rates/PmbA_TldD.gap.json
@@ -0,0 +1 @@
+{"family": "PmbA_TldD", "n_seqs": 2423, "length": 363, "gap_rates": [0.6780850185720182, 0.33388361535286837, 0.18778373916632274, 0.14073462649607923, 0.1221626083367726, 0.09863805200165085, 0.08873297565002064, 0.08254230293025175, 0.0751134956665291, 0.0709863805200165, 0.06851011143210896, 0.06727197688815519, 0.06438299628559636, 0.062319438712340074, 0.061494015683037556, 0.059017746595130004, 0.058192323565827486, 0.05736690053652497, 0.05654147750722245, 0.05323978539001238, 0.0520016508460586, 0.0520016508460586, 0.051176227816756084, 0.052827073875361126, 0.04869995872884853, 0.0470491126702435, 0.04622368964094098, 0.04622368964094098, 0.04539826661163846, 0.044985555096987206, 0.044985555096987206, 0.04333470903838217, 0.04209657449442839, 0.041271151465125874, 0.04085843995047462, 0.04209657449442839, 0.041271151465125874, 0.04869995872884853, 0.0470491126702435, 0.044572843582335944, 0.04292199752373091, 0.041271151465125874, 0.04044572843582336, 0.04085843995047462, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PocR.gap.json b/pfam_gap_rates/PocR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19cb08b300f243392cd700a815dd0e9e12ac0c32
--- /dev/null
+++ b/pfam_gap_rates/PocR.gap.json
@@ -0,0 +1 @@
+{"family": "PocR", "n_seqs": 473, "length": 178, "gap_rates": [0.5496828752642706, 0.37209302325581395, 0.3044397463002114, 0.2854122621564482, 0.23890063424947147, 0.17758985200845667, 0.1543340380549683, 0.1226215644820296, 0.11205073995771671, 0.1014799154334038, 0.09725158562367865, 0.09302325581395349, 0.08456659619450317, 0.07610993657505286, 0.07399577167019028, 0.06976744186046512, 0.06976744186046512, 0.05708245243128964, 0.05708245243128964, 0.052854122621564484, 0.0507399577167019, 0.0507399577167019, 0.0507399577167019, 0.0507399577167019, 0.0507399577167019, 0.052854122621564484, 0.0507399577167019, 0.0507399577167019, 0.0507399577167019, 0.046511627906976744, 0.052854122621564484, 0.04439746300211417, 0.040169133192389, 0.040169133192389, 0.040169133192389, 0.03805496828752643, 0.17124735729386892, 0.9302325581395349, 0.8731501057082452, 0.048625792811839326, 0.09090909090909091, 0.9471458773784355, 0.048625792811839326, 0.048625792811839326, 0.040169133192389, 0.040169133192389, 0.6553911205073996, 0.048625792811839326, 0.0507399577167019, 0.05919661733615222, 0.09302325581395349, 0.06976744186046512, 0.06342494714587738, 0.05708245243128964, 0.048625792811839326, 0.04439746300211417, 0.042283298097251586, 0.04439746300211417, 0.04439746300211417, 0.042283298097251586, 0.0613107822410148, 0.0507399577167019, 0.046511627906976744, 0.0507399577167019, 0.0507399577167019, 0.052854122621564484, 0.046511627906976744, 0.05919661733615222, 0.2135306553911205, 0.15856236786469344, 0.20507399577167018, 0.17970401691331925, 0.09513742071881606, 0.08879492600422834, 0.08456659619450317, 0.08879492600422834, 0.07822410147991543, 0.03171247357293869, 0.03171247357293869, 0.03171247357293869, 0.03171247357293869, 0.03382663847780127, 0.9302325581395349, 0.02959830866807611, 0.03171247357293869, 0.02748414376321353, 0.02536997885835095, 0.02536997885835095, 0.02536997885835095, 0.021141649048625793, 0.019027484143763214, 0.019027484143763214, 0.019027484143763214, 0.019027484143763214, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.023255813953488372, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.02536997885835095, 0.02748414376321353, 0.02748414376321353, 0.02748414376321353, 0.03171247357293869, 0.03382663847780127, 0.7251585623678647, 0.9154334038054969, 0.8414376321353065, 0.6723044397463002, 0.10359408033826638, 0.09513742071881606, 0.9154334038054969, 0.9217758985200846, 0.9069767441860465, 0.0613107822410148, 0.052854122621564484, 0.0507399577167019, 0.048625792811839326, 0.05919661733615222, 0.0507399577167019, 0.05496828752642706, 0.052854122621564484, 0.06976744186046512, 0.06765327695560254, 0.080338266384778, 0.07610993657505286, 0.8625792811839323, 0.9429175475687104, 0.904862579281184, 0.8435517970401691, 0.15856236786469344, 0.080338266384778, 0.06765327695560254, 0.06976744186046512, 0.06553911205073996, 0.06765327695560254, 0.06765327695560254, 0.06976744186046512, 0.07188160676532769, 0.07188160676532769, 0.07188160676532769, 0.07188160676532769, 0.07188160676532769, 0.07399577167019028, 0.07399577167019028, 0.07399577167019028, 0.07399577167019028, 0.07610993657505286, 0.07822410147991543, 0.0824524312896406, 0.08456659619450317, 0.08668076109936575, 0.08879492600422834, 0.09302325581395349, 0.09725158562367865, 0.09725158562367865, 0.09936575052854123, 0.09936575052854123, 0.10570824524312897, 0.10782241014799154, 0.1226215644820296, 0.13953488372093023, 0.1522198731501057, 0.18181818181818182, 0.19873150105708245, 0.226215644820296, 0.27906976744186046, 0.3488372093023256, 0.5306553911205074, 0.7949260042283298], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PolyA_pol.gap.json b/pfam_gap_rates/PolyA_pol.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad50db255ed3f565e8e691920ba758cceffd2196
--- /dev/null
+++ b/pfam_gap_rates/PolyA_pol.gap.json
@@ -0,0 +1 @@
+{"family": "PolyA_pol", "n_seqs": 3255, "length": 154, "gap_rates": [0.3109062980030722, 0.13425499231950844, 0.054377880184331796, 0.047926267281105994, 0.047311827956989246, 0.047004608294930875, 0.046697388632872504, 0.047004608294930875, 0.04331797235023042, 0.04331797235023042, 0.0423963133640553, 0.04055299539170507, 0.03870967741935484, 0.0380952380952381, 0.03748079877112135, 0.03655913978494624, 0.035944700460829496, 0.9465437788018434, 0.9161290322580645, 0.03533026113671275, 0.03533026113671275, 0.03533026113671275, 0.03533026113671275, 0.03533026113671275, 0.035023041474654376, 0.03533026113671275, 0.035637480798771125, 0.8549923195084486, 0.07956989247311828, 0.07895545314900154, 0.06144393241167435, 0.04208909370199693, 0.04577572964669739, 0.047619047619047616, 0.05806451612903226, 0.05499231950844854, 0.0663594470046083, 0.07127496159754225, 0.060215053763440864, 0.046697388632872504, 0.04331797235023042, 0.04516129032258064, 0.048233486943164365, 0.04976958525345622, 0.5410138248847927, 0.5204301075268817, 0.48325652841781874, 0.4147465437788018, 0.8046082949308756, 0.10599078341013825, 0.054377880184331796, 0.04976958525345622, 0.046697388632872504, 0.046697388632872504, 0.047926267281105994, 0.047311827956989246, 0.047311827956989246, 0.04546850998463902, 0.04946236559139785, 0.05161290322580645, 0.05130568356374808, 0.05007680491551459, 0.05192012288786482, 0.04946236559139785, 0.8052227342549924, 0.8359447004608295, 0.936405529953917, 0.9062980030721967, 0.8233486943164362, 0.7262672811059908, 0.05192012288786482, 0.05161290322580645, 0.047004608294930875, 0.046697388632872504, 0.05284178187403994, 0.05683563748079877, 0.05468509984639017, 0.05499231950844854, 0.05591397849462366, 0.059600614439324115, 0.12780337941628264, 0.08725038402457758, 0.07680491551459294, 0.07588325652841782, 0.07465437788018434, 0.07158218125960061, 0.06973886328725039, 0.11920122887864823, 0.18832565284178188, 0.15299539170506912, 0.09800307219662058, 0.0989247311827957, 0.11950844854070661, 0.2706605222734255, 0.19293394777265746, 0.748694316436252, 0.7993855606758833, 0.8202764976958525, 0.8328725038402458, 0.8599078341013825, 0.9308755760368663, 0.8470046082949308, 0.8254992319508448, 0.8153609831029186, 0.7769585253456222, 0.744700460829493, 0.035944700460829496, 0.029185867895545316, 0.031029185867895544, 0.029493087557603687, 0.027649769585253458, 0.027342549923195084, 0.026728110599078342, 0.026728110599078342, 0.027035330261136713, 0.027035330261136713, 0.027035330261136713, 0.027649769585253458, 0.027342549923195084, 0.027342549923195084, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.02795698924731183, 0.028878648233486945, 0.8648233486943164, 0.8725038402457758, 0.8574500768049155, 0.31336405529953915, 0.06359447004608294, 0.05099846390168971, 0.048540706605222736, 0.09185867895545315, 0.919815668202765, 0.9271889400921659, 0.9188940092165898, 0.035023041474654376, 0.035637480798771125, 0.035637480798771125, 0.035637480798771125, 0.03533026113671275, 0.035944700460829496, 0.9182795698924732, 0.03686635944700461, 0.03778801843317972, 0.03840245775729647, 0.03870967741935484, 0.03901689708141321, 0.04055299539170507, 0.04270353302611367, 0.04516129032258064, 0.047004608294930875, 0.05775729646697389, 0.26144393241167435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PolyA_pol_RNAbd.gap.json b/pfam_gap_rates/PolyA_pol_RNAbd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c4db9d17a8eb83fb66d2d4ba54cfa775123cf2c
--- /dev/null
+++ b/pfam_gap_rates/PolyA_pol_RNAbd.gap.json
@@ -0,0 +1 @@
+{"family": "PolyA_pol_RNAbd", "n_seqs": 2837, "length": 65, "gap_rates": [0.3151216073316884, 0.18188227000352486, 0.15368346845259076, 0.1254846669016567, 0.08494888967218893, 0.0722594289742686, 0.06732463870285513, 0.061332393373281634, 0.049347902714134646, 0.040888262248854425, 0.03842086711314769, 0.036658442016214314, 0.03454353189989425, 0.032781106802960876, 0.03137116672541417, 0.032781106802960876, 0.032076136764187524, 0.8145928798026084, 0.8026083891434614, 0.026788861473387382, 0.020444131124427212, 0.008107155445893549, 0.0042298202326401125, 0.0021149101163200562, 0.0014099400775467042, 0.0017624250969333803, 0.0010574550581600281, 0.0010574550581600281, 0.0007049700387733521, 0.0007049700387733521, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00035248501938667606, 0.0014099400775467042, 0.0024673951357067326, 0.003172365174480085, 0.0042298202326401125, 0.011279520620373634, 0.009164610504053579, 0.009164610504053579, 0.013041945717307015, 0.05604511808248149, 0.017976735988720478, 0.018329221008107157, 0.024673951357067323, 0.028198801550934086, 0.02960874162848079, 0.03137116672541417, 0.03313359182234755, 0.035248501938667604, 0.036658442016214314, 0.040888262248854425, 0.050052872752908, 0.05992245329573493, 0.1075079309129362, 0.13676418752203032, 0.1572083186464575, 0.19175185054635177, 0.2224180472329926, 0.5033486076841734, 0.6827634825519915, 0.8907296439901304], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Popeye.gap.json b/pfam_gap_rates/Popeye.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82bfdcb54e035ea01517eef1acb7e017fb641eba
--- /dev/null
+++ b/pfam_gap_rates/Popeye.gap.json
@@ -0,0 +1 @@
+{"family": "Popeye", "n_seqs": 160, "length": 241, "gap_rates": [0.85625, 0.3375, 0.2625, 0.21875, 0.18125, 0.175, 0.16875, 0.15625, 0.14375, 0.14375, 0.1375, 0.1375, 0.1375, 0.1375, 0.13125, 0.13125, 0.125, 0.11875, 0.11875, 0.13125, 0.13125, 0.1, 0.2125, 0.7625, 0.18125, 0.1625, 0.15625, 0.06875, 0.06875, 0.06875, 0.06875, 0.06875, 0.0625, 0.05, 0.05, 0.05, 0.04375, 0.04375, 0.04375, 0.04375, 0.0375, 0.0375, 0.04375, 0.0375, 0.03125, 0.03125, 0.03125, 0.04375, 0.03125, 0.03125, 0.9375, 0.0375, 0.04375, 0.05, 0.05, 0.05, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.0375, 0.03125, 0.03125, 0.03125, 0.03125, 0.025, 0.025, 0.025, 0.025, 0.89375, 0.025, 0.025, 0.025, 0.025, 0.025, 0.03125, 0.03125, 0.0375, 0.0375, 0.03125, 0.03125, 0.0375, 0.0375, 0.0375, 0.0625, 0.11875, 0.075, 0.0375, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.5625, 0.34375, 0.0625, 0.075, 0.08125, 0.1, 0.1, 0.10625, 0.10625, 0.10625, 0.1125, 0.1125, 0.1125, 0.1125, 0.1125, 0.1125, 0.11875, 0.11875, 0.125, 0.13125, 0.13125, 0.1375, 0.1375, 0.1375, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15625, 0.16875, 0.16875, 0.16875, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.18125, 0.18125, 0.18125, 0.18125, 0.18125, 0.20625, 0.24375, 0.25, 0.3875, 0.7, 0.9375, 0.9375, 0.9375, 0.95, 0.95, 0.95, 0.95, 0.9375, 0.9375, 0.925, 0.41875, 0.26875, 0.24375, 0.20625, 0.1875, 0.18125, 0.18125, 0.18125, 0.18125, 0.18125, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.16875, 0.16875, 0.16875, 0.15625, 0.15625, 0.15, 0.15, 0.15, 0.15, 0.15, 0.1375, 0.1375, 0.1375, 0.13125, 0.13125, 0.13125, 0.125, 0.11875, 0.1125, 0.1125, 0.1125, 0.1125, 0.1125, 0.1125, 0.10625, 0.10625, 0.10625, 0.10625, 0.10625, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.175, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.2, 0.20625, 0.24375, 0.2875, 0.33125, 0.35625, 0.39375, 0.69375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PriCT_1.gap.json b/pfam_gap_rates/PriCT_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0f4e0e2b2302aa3679297da193ecb6f643058df
--- /dev/null
+++ b/pfam_gap_rates/PriCT_1.gap.json
@@ -0,0 +1 @@
+{"family": "PriCT_1", "n_seqs": 200, "length": 79, "gap_rates": [0.935, 0.845, 0.71, 0.655, 0.45, 0.285, 0.205, 0.13, 0.08, 0.05, 0.01, 0.01, 0.01, 0.01, 0.01, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.01, 0.005, 0.005, 0.01, 0.01, 0.01, 0.01, 0.005, 0.81, 0.855, 0.86, 0.865, 0.925, 0.945, 0.895, 0.86, 0.86, 0.81, 0.775, 0.005, 0.01, 0.01, 0.005, 0.0, 0.0, 0.0, 0.0, 0.0, 0.035, 0.1, 0.11, 0.95, 0.685, 0.0, 0.0, 0.0, 0.0, 0.005, 0.005, 0.0, 0.0, 0.005, 0.005, 0.01, 0.015, 0.02, 0.03, 0.05, 0.05, 0.065, 0.08, 0.235, 0.38, 0.58, 0.785], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PriCT_2.gap.json b/pfam_gap_rates/PriCT_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f9efb7d4a1131bae7acddea8b5fa0468f0b2849
--- /dev/null
+++ b/pfam_gap_rates/PriCT_2.gap.json
@@ -0,0 +1 @@
+{"family": "PriCT_2", "n_seqs": 145, "length": 97, "gap_rates": [0.8137931034482758, 0.4896551724137931, 0.32413793103448274, 0.16551724137931034, 0.1310344827586207, 0.11724137931034483, 0.11724137931034483, 0.10344827586206896, 0.0896551724137931, 0.06896551724137931, 0.06206896551724138, 0.3793103448275862, 0.9379310344827586, 0.14482758620689656, 0.30344827586206896, 0.19310344827586207, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.020689655172413793, 0.020689655172413793, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.8413793103448276, 0.3448275862068966, 0.2620689655172414, 0.2482758620689655, 0.2206896551724138, 0.9448275862068966, 0.8827586206896552, 0.06206896551724138, 0.9379310344827586, 0.9379310344827586, 0.9448275862068966, 0.9448275862068966, 0.9448275862068966, 0.9448275862068966, 0.9379310344827586, 0.9379310344827586, 0.06896551724137931, 0.16551724137931034, 0.14482758620689656, 0.0, 0.2206896551724138, 0.21379310344827587, 0.0, 0.006896551724137931, 0.006896551724137931, 0.0, 0.0, 0.006896551724137931, 0.013793103448275862, 0.006896551724137931, 0.7586206896551724, 0.020689655172413793, 0.006896551724137931, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.8551724137931035, 0.020689655172413793, 0.0, 0.9379310344827586, 0.9103448275862069, 0.013793103448275862, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.6482758620689655, 0.903448275862069, 0.503448275862069, 0.2206896551724138, 0.9310344827586207, 0.11724137931034483, 0.11724137931034483, 0.11724137931034483, 0.1103448275862069, 0.1103448275862069, 0.11724137931034483, 0.12413793103448276, 0.1310344827586207, 0.1310344827586207, 0.13793103448275862, 0.16551724137931034, 0.2, 0.2689655172413793], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Propeptide_C25.gap.json b/pfam_gap_rates/Propeptide_C25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6927175bc88bc47971b57e62675d02aa6158f0b
--- /dev/null
+++ b/pfam_gap_rates/Propeptide_C25.gap.json
@@ -0,0 +1 @@
+{"family": "Propeptide_C25", "n_seqs": 154, "length": 214, "gap_rates": [0.948051948051948, 0.935064935064935, 0.9090909090909091, 0.8311688311688312, 0.8116883116883117, 0.7792207792207793, 0.7142857142857143, 0.6688311688311688, 0.6428571428571429, 0.6103896103896104, 0.5909090909090909, 0.6038961038961039, 0.564935064935065, 0.538961038961039, 0.5324675324675324, 0.512987012987013, 0.512987012987013, 0.5064935064935064, 0.4805194805194805, 0.8051948051948052, 0.4805194805194805, 0.4675324675324675, 0.44155844155844154, 0.43506493506493504, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.4155844155844156, 0.4155844155844156, 0.42207792207792205, 0.42207792207792205, 0.42207792207792205, 0.43506493506493504, 0.43506493506493504, 0.4090909090909091, 0.3961038961038961, 0.3961038961038961, 0.37662337662337664, 0.9155844155844156, 0.34415584415584416, 0.3181818181818182, 0.2857142857142857, 0.2532467532467532, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.21428571428571427, 0.19480519480519481, 0.19480519480519481, 0.18831168831168832, 0.17532467532467533, 0.14935064935064934, 0.12337662337662338, 0.09740259740259741, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.09090909090909091, 0.08441558441558442, 0.9415584415584416, 0.08441558441558442, 0.922077922077922, 0.08441558441558442, 0.09090909090909091, 0.08441558441558442, 0.09090909090909091, 0.922077922077922, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.07792207792207792, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.08441558441558442, 0.09090909090909091, 0.8311688311688312, 0.11688311688311688, 0.09740259740259741, 0.1038961038961039, 0.09740259740259741, 0.08441558441558442, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09740259740259741, 0.11688311688311688, 0.12337662337662338, 0.11038961038961038, 0.09740259740259741, 0.38311688311688313, 0.2077922077922078, 0.15584415584415584, 0.12337662337662338, 0.11038961038961038, 0.12337662337662338, 0.12987012987012986, 0.1038961038961039, 0.11038961038961038, 0.11038961038961038, 0.8766233766233766, 0.9155844155844156, 0.9415584415584416, 0.9090909090909091, 0.7532467532467533, 0.09740259740259741, 0.11688311688311688, 0.08441558441558442, 0.09740259740259741, 0.18181818181818182, 0.09090909090909091, 0.09090909090909091, 0.07792207792207792, 0.07142857142857142, 0.045454545454545456, 0.05844155844155844, 0.06493506493506493, 0.045454545454545456, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.025974025974025976, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.032467532467532464, 0.03896103896103896, 0.03896103896103896, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.05194805194805195, 0.05844155844155844, 0.05844155844155844, 0.07792207792207792, 0.19480519480519481, 0.2077922077922078, 0.2597402597402597, 0.2922077922077922, 0.34415584415584416, 0.36363636363636365, 0.8376623376623377, 0.9285714285714286, 0.9415584415584416, 0.8766233766233766, 0.7597402597402597, 0.4805194805194805, 0.5064935064935064, 0.5454545454545454, 0.5714285714285714, 0.5974025974025974, 0.6103896103896104, 0.6363636363636364, 0.6428571428571429, 0.6623376623376623, 0.6753246753246753, 0.7012987012987013, 0.7012987012987013, 0.7077922077922078, 0.7142857142857143, 0.7077922077922078, 0.7142857142857143, 0.7142857142857143, 0.7207792207792207, 0.7207792207792207, 0.7402597402597403, 0.7467532467532467, 0.8246753246753247, 0.9155844155844156, 0.9285714285714286, 0.948051948051948], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Protoglobin.gap.json b/pfam_gap_rates/Protoglobin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f15b1fc36f56e30903920bfcb7765baec5ab85e
--- /dev/null
+++ b/pfam_gap_rates/Protoglobin.gap.json
@@ -0,0 +1 @@
+{"family": "Protoglobin", "n_seqs": 625, "length": 199, "gap_rates": [0.7008, 0.5264, 0.4112, 0.3424, 0.2864, 0.2464, 0.208, 0.192, 0.1792, 0.1728, 0.16, 0.152, 0.1344, 0.1216, 0.12, 0.1136, 0.1072, 0.1008, 0.0992, 0.0896, 0.0848, 0.0672, 0.0592, 0.0496, 0.0464, 0.0432, 0.0448, 0.04, 0.0336, 0.032, 0.0304, 0.0304, 0.0272, 0.0256, 0.0256, 0.024, 0.024, 0.024, 0.024, 0.0256, 0.0256, 0.0256, 0.0288, 0.0272, 0.0288, 0.0272, 0.0288, 0.032, 0.0288, 0.0304, 0.0304, 0.0288, 0.0272, 0.0272, 0.0256, 0.6864, 0.744, 0.7632, 0.8128, 0.8192, 0.8208, 0.8208, 0.8208, 0.9024, 0.904, 0.8976, 0.8208, 0.8208, 0.8208, 0.8128, 0.8032, 0.7456, 0.7392, 0.6224, 0.1392, 0.0736, 0.0432, 0.048, 0.04, 0.04, 0.0368, 0.0368, 0.0272, 0.0272, 0.0256, 0.0224, 0.0208, 0.024, 0.024, 0.024, 0.024, 0.024, 0.0336, 0.0352, 0.0304, 0.0256, 0.9264, 0.8496, 0.0256, 0.0272, 0.0256, 0.024, 0.0256, 0.0256, 0.0256, 0.024, 0.024, 0.024, 0.0256, 0.024, 0.0256, 0.0272, 0.0272, 0.0288, 0.0272, 0.7488, 0.7632, 0.768, 0.8768, 0.88, 0.88, 0.88, 0.8784, 0.864, 0.7632, 0.7504, 0.7488, 0.0256, 0.0256, 0.0256, 0.024, 0.024, 0.0224, 0.0208, 0.0208, 0.0192, 0.0208, 0.0208, 0.0192, 0.0208, 0.0208, 0.024, 0.0224, 0.0224, 0.024, 0.0224, 0.0208, 0.024, 0.0272, 0.0304, 0.0544, 0.0464, 0.048, 0.0528, 0.0544, 0.832, 0.8784, 0.8928, 0.9312, 0.9408, 0.9168, 0.8816, 0.8672, 0.8176, 0.4944, 0.1888, 0.144, 0.1024, 0.096, 0.064, 0.0592, 0.0576, 0.056, 0.0592, 0.0624, 0.064, 0.0672, 0.0672, 0.0688, 0.072, 0.0736, 0.08, 0.0816, 0.0848, 0.0928, 0.0944, 0.0992, 0.1008, 0.104, 0.1072, 0.1104, 0.1152, 0.128, 0.1472, 0.208, 0.3104, 0.4656, 0.6816, 0.9216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PsaL.gap.json b/pfam_gap_rates/PsaL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d5684e82a0117c2019291cae63d681a44034846
--- /dev/null
+++ b/pfam_gap_rates/PsaL.gap.json
@@ -0,0 +1 @@
+{"family": "PsaL", "n_seqs": 130, "length": 154, "gap_rates": [0.7076923076923077, 0.23846153846153847, 0.2, 0.14615384615384616, 0.08461538461538462, 0.06153846153846154, 0.046153846153846156, 0.046153846153846156, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.8384615384615385, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.2076923076923077, 0.038461538461538464, 0.023076923076923078, 0.023076923076923078, 0.11538461538461539, 0.13076923076923078, 0.17692307692307693, 0.46923076923076923, 0.4076923076923077, 0.2923076923076923, 0.26153846153846155, 0.26153846153846155, 0.2230769230769231, 0.2, 0.17692307692307693, 0.12307692307692308, 0.6538461538461539, 0.7230769230769231, 0.7, 0.6461538461538462, 0.023076923076923078, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.023076923076923078, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.023076923076923078, 0.023076923076923078, 0.038461538461538464, 0.08461538461538462, 0.2076923076923077, 0.46923076923076923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PseudoU_synth_2.gap.json b/pfam_gap_rates/PseudoU_synth_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ed88cd2dbc673e1c56df84758590036b046f4b9
--- /dev/null
+++ b/pfam_gap_rates/PseudoU_synth_2.gap.json
@@ -0,0 +1 @@
+{"family": "PseudoU_synth_2", "n_seqs": 5000, "length": 184, "gap_rates": [0.6134, 0.1078, 0.0592, 0.0552, 0.045, 0.0448, 0.044, 0.0438, 0.0432, 0.0428, 0.0428, 0.0426, 0.0422, 0.0424, 0.042, 0.042, 0.0422, 0.6038, 0.771, 0.8582, 0.927, 0.9426, 0.9144, 0.806, 0.7254, 0.5832, 0.5684, 0.4914, 0.4072, 0.2444, 0.1304, 0.094, 0.047, 0.044, 0.0428, 0.0426, 0.0422, 0.0426, 0.042, 0.0424, 0.0412, 0.038, 0.9284, 0.8876, 0.0322, 0.0306, 0.0278, 0.023, 0.0192, 0.0182, 0.017, 0.016, 0.0156, 0.0146, 0.0146, 0.0144, 0.0144, 0.0144, 0.014, 0.0138, 0.0134, 0.0134, 0.0134, 0.0116, 0.0114, 0.011, 0.0108, 0.0108, 0.012, 0.0116, 0.0114, 0.0116, 0.0116, 0.0118, 0.0114, 0.0108, 0.0108, 0.0106, 0.3598, 0.3586, 0.0268, 0.0228, 0.0156, 0.012, 0.0106, 0.0104, 0.01, 0.0098, 0.01, 0.0102, 0.0102, 0.0102, 0.0102, 0.0492, 0.9288, 0.3708, 0.185, 0.1678, 0.1564, 0.158, 0.1596, 0.1484, 0.1044, 0.1038, 0.1048, 0.1038, 0.0696, 0.0704, 0.0772, 0.0844, 0.094, 0.7552, 0.9014, 0.928, 0.944, 0.9492, 0.9358, 0.9154, 0.8828, 0.6774, 0.5256, 0.348, 0.3156, 0.3016, 0.2554, 0.2282, 0.216, 0.2052, 0.1848, 0.1498, 0.116, 0.0938, 0.066, 0.0516, 0.0484, 0.0402, 0.0412, 0.0412, 0.0424, 0.0426, 0.0446, 0.0448, 0.0438, 0.0466, 0.0474, 0.0514, 0.0568, 0.0636, 0.8886, 0.9146, 0.9248, 0.9492, 0.9298, 0.9194, 0.9068, 0.855, 0.8168, 0.7878, 0.6686, 0.5926, 0.1282, 0.0962, 0.0852, 0.0774, 0.039, 0.0386, 0.0384, 0.038, 0.0398, 0.038, 0.0378, 0.0376, 0.0378, 0.038, 0.038, 0.038, 0.0382, 0.0384, 0.0386, 0.04, 0.0444, 0.063, 0.1452, 0.5442], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pterin_4a.gap.json b/pfam_gap_rates/Pterin_4a.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c84e8e536590bba479901c52babc34618367bda
--- /dev/null
+++ b/pfam_gap_rates/Pterin_4a.gap.json
@@ -0,0 +1 @@
+{"family": "Pterin_4a", "n_seqs": 1367, "length": 101, "gap_rates": [0.48719824433065106, 0.274323335771763, 0.23920994879297733, 0.2194586686174104, 0.19312362838332114, 0.17922457937088515, 0.16532553035844916, 0.15581565471836137, 0.14484272128749084, 0.1346013167520117, 0.12874908558888076, 0.2011704462326262, 0.1506949524506218, 0.12362838332114119, 0.8697878566203365, 0.7366495976591075, 0.07095830285296269, 0.05413313825896123, 0.03218727139722019, 0.03218727139722019, 0.08778346744696415, 0.46013167520117043, 0.8573518653986832, 0.9319678127286027, 0.8792977322604243, 0.5530358449158742, 0.1302121433796635, 0.04316020482809071, 0.030724213606437453, 0.07095830285296269, 0.7937088514996342, 0.8975859546452085, 0.7534747622531089, 0.019019751280175568, 0.018288222384784197, 0.01755669348939283, 0.01755669348939283, 0.014630577907827359, 0.014630577907827359, 0.013899049012435992, 0.027798098024871983, 0.013167520117044623, 0.015362106803218726, 0.013899049012435992, 0.015362106803218726, 0.013167520117044623, 0.013899049012435992, 0.011704462326261888, 0.011704462326261888, 0.009509875640087784, 0.009509875640087784, 0.009509875640087784, 0.009509875640087784, 0.009509875640087784, 0.010241404535479151, 0.010972933430870519, 0.010972933430870519, 0.010972933430870519, 0.010972933430870519, 0.010972933430870519, 0.010241404535479151, 0.011704462326261888, 0.011704462326261888, 0.013167520117044623, 0.011704462326261888, 0.010972933430870519, 0.9378200438917337, 0.011704462326261888, 0.010972933430870519, 0.010241404535479151, 0.010241404535479151, 0.010972933430870519, 0.010241404535479151, 0.012435991221653255, 0.013899049012435992, 0.014630577907827359, 0.014630577907827359, 0.015362106803218726, 0.015362106803218726, 0.016093635698610095, 0.016825164594001463, 0.01755669348939283, 0.018288222384784197, 0.019751280175566936, 0.024140453547915143, 0.8990490124359912, 0.023408924652523776, 0.023408924652523776, 0.023408924652523776, 0.02487198244330651, 0.026335040234089245, 0.026335040234089245, 0.027066569129480616, 0.027066569129480616, 0.027066569129480616, 0.027066569129480616, 0.029992684711046085, 0.03145574250182882, 0.038039502560351136, 0.1389904901243599, 0.6986100950987564], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pyrid_ox_like.gap.json b/pfam_gap_rates/Pyrid_ox_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe94118350c8abe9fd809ba47f5d3bb026c7f83f
--- /dev/null
+++ b/pfam_gap_rates/Pyrid_ox_like.gap.json
@@ -0,0 +1 @@
+{"family": "Pyrid_ox_like", "n_seqs": 555, "length": 164, "gap_rates": [0.7441441441441441, 0.6252252252252253, 0.3981981981981982, 0.1873873873873874, 0.14594594594594595, 0.12972972972972974, 0.12072072072072072, 0.1009009009009009, 0.09549549549549549, 0.0936936936936937, 0.09009009009009009, 0.08468468468468468, 0.08288288288288288, 0.07927927927927927, 0.07747747747747748, 0.07207207207207207, 0.05945945945945946, 0.06126126126126126, 0.06126126126126126, 0.05765765765765766, 0.05765765765765766, 0.12252252252252252, 0.372972972972973, 0.8684684684684685, 0.0990990990990991, 0.07927927927927927, 0.06306306306306306, 0.05045045045045045, 0.04864864864864865, 0.043243243243243246, 0.043243243243243246, 0.04504504504504504, 0.04144144144144144, 0.03783783783783784, 0.032432432432432434, 0.03783783783783784, 0.9243243243243243, 0.04504504504504504, 0.05945945945945946, 0.09009009009009009, 0.08468468468468468, 0.06306306306306306, 0.043243243243243246, 0.8936936936936937, 0.010810810810810811, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.007207207207207207, 0.007207207207207207, 0.009009009009009009, 0.010810810810810811, 0.005405405405405406, 0.014414414414414415, 0.02882882882882883, 0.03423423423423423, 0.03963963963963964, 0.032432432432432434, 0.018018018018018018, 0.014414414414414415, 0.010810810810810811, 0.009009009009009009, 0.007207207207207207, 0.009009009009009009, 0.9423423423423424, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.3063063063063063, 0.2072072072072072, 0.05225225225225225, 0.9495495495495495, 0.9495495495495495, 0.9495495495495495, 0.009009009009009009, 0.0036036036036036037, 0.0036036036036036037, 0.0036036036036036037, 0.0018018018018018018, 0.0, 0.0, 0.0018018018018018018, 0.0018018018018018018, 0.0036036036036036037, 0.005405405405405406, 0.0036036036036036037, 0.0036036036036036037, 0.0036036036036036037, 0.0036036036036036037, 0.0036036036036036037, 0.0018018018018018018, 0.0018018018018018018, 0.0036036036036036037, 0.0018018018018018018, 0.0036036036036036037, 0.0018018018018018018, 0.0018018018018018018, 0.0018018018018018018, 0.0036036036036036037, 0.0036036036036036037, 0.005405405405405406, 0.005405405405405406, 0.007207207207207207, 0.009009009009009009, 0.012612612612612612, 0.8468468468468469, 0.8486486486486486, 0.8486486486486486, 0.8648648648648649, 0.8486486486486486, 0.8486486486486486, 0.8468468468468469, 0.8468468468468469, 0.18558558558558558, 0.014414414414414415, 0.018018018018018018, 0.014414414414414415, 0.010810810810810811, 0.010810810810810811, 0.014414414414414415, 0.018018018018018018, 0.016216216216216217, 0.012612612612612612, 0.014414414414414415, 0.012612612612612612, 0.012612612612612612, 0.014414414414414415, 0.014414414414414415, 0.014414414414414415, 0.025225225225225224, 0.04864864864864865, 0.07207207207207207, 0.07747747747747748, 0.09009009009009009, 0.11891891891891893, 0.12972972972972974, 0.15315315315315314, 0.3441441441441441, 0.25225225225225223, 0.26846846846846845, 0.2918918918918919, 0.3045045045045045, 0.3117117117117117, 0.3225225225225225, 0.3225225225225225, 0.32432432432432434, 0.3387387387387387, 0.35135135135135137, 0.36576576576576575, 0.3837837837837838, 0.3855855855855856, 0.3891891891891892, 0.3981981981981982, 0.3945945945945946, 0.4036036036036036, 0.43783783783783786, 0.563963963963964, 0.7495495495495496, 0.8306306306306306], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Q_salvage.gap.json b/pfam_gap_rates/Q_salvage.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47d4cf09e7c84c99750e5cdf7797cb07a2271818
--- /dev/null
+++ b/pfam_gap_rates/Q_salvage.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RAP.gap.json b/pfam_gap_rates/RAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9a3a47c28bc677ff11a1331800493093de22dc3
--- /dev/null
+++ b/pfam_gap_rates/RAP.gap.json
@@ -0,0 +1 @@
+{"family": "RAP", "n_seqs": 583, "length": 74, "gap_rates": [0.31046312178387653, 0.2058319039451115, 0.1680960548885077, 0.15265866209262435, 0.13550600343053174, 0.12006861063464837, 0.10120068610634649, 0.07718696397941681, 0.07890222984562607, 0.8267581475128645, 0.902229845626072, 0.9382504288164666, 0.9485420240137221, 0.9416809605488851, 0.9279588336192109, 0.8336192109777015, 0.8216123499142367, 0.058319039451114926, 0.0823327615780446, 0.07890222984562607, 0.06689536878216124, 0.7324185248713551, 0.09433962264150944, 0.08576329331046312, 0.08404802744425385, 0.05317324185248713, 0.8113207547169812, 0.9245283018867925, 0.8370497427101201, 0.8044596912521441, 0.00686106346483705, 0.00686106346483705, 0.00686106346483705, 0.00686106346483705, 0.005145797598627788, 0.005145797598627788, 0.005145797598627788, 0.003430531732418525, 0.003430531732418525, 0.0017152658662092624, 0.0017152658662092624, 0.0017152658662092624, 0.0, 0.018867924528301886, 0.9108061749571184, 0.003430531732418525, 0.003430531732418525, 0.008576329331046312, 0.012006861063464836, 0.012006861063464836, 0.015437392795883362, 0.022298456260720412, 0.025728987993138937, 0.025728987993138937, 0.030874785591766724, 0.03773584905660377, 0.0411663807890223, 0.05317324185248713, 0.08919382504288165, 0.9056603773584906, 0.8662092624356775, 0.2469982847341338, 0.13379073756432247, 0.13550600343053174, 0.13550600343053174, 0.14065180102915953, 0.14922813036020582, 0.16295025728987994, 0.1732418524871355, 0.1732418524871355, 0.18696397941680962, 0.2624356775300172, 0.44082332761578047, 0.8164665523156089], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RAWUL.gap.json b/pfam_gap_rates/RAWUL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1eabcf00036468c3a3d9b7017302c0a4339e4f5a
--- /dev/null
+++ b/pfam_gap_rates/RAWUL.gap.json
@@ -0,0 +1 @@
+{"family": "RAWUL", "n_seqs": 290, "length": 89, "gap_rates": [0.0896551724137931, 0.04482758620689655, 0.034482758620689655, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.020689655172413793, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.010344827586206896, 0.503448275862069, 0.6724137931034483, 0.7241379310344828, 0.7241379310344828, 0.7689655172413793, 0.8413793103448276, 0.8482758620689655, 0.8689655172413793, 0.8862068965517241, 0.8586206896551725, 0.8413793103448276, 0.8310344827586207, 0.7620689655172413, 0.7241379310344828, 0.7206896551724138, 0.6724137931034483, 0.6793103448275862, 0.6793103448275862, 0.6517241379310345, 0.6448275862068965, 0.5241379310344828, 0.05172413793103448, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.27586206896551724, 0.2517241379310345, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.013793103448275862, 0.7344827586206897, 0.7034482758620689, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.6482758620689655, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.7551724137931034, 0.07586206896551724, 0.1103448275862069, 0.12758620689655173, 0.1310344827586207, 0.1310344827586207, 0.1310344827586207, 0.1310344827586207, 0.13448275862068965, 0.14482758620689656, 0.23793103448275862], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RB_B.gap.json b/pfam_gap_rates/RB_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf299990d412cf4ba2d6a2365118d20cdfefc85b
--- /dev/null
+++ b/pfam_gap_rates/RB_B.gap.json
@@ -0,0 +1 @@
+{"family": "RB_B", "n_seqs": 228, "length": 190, "gap_rates": [0.6140350877192983, 0.2719298245614035, 0.21052631578947367, 0.15789473684210525, 0.12280701754385964, 0.11403508771929824, 0.09210526315789473, 0.09210526315789473, 0.07456140350877193, 0.07456140350877193, 0.07456140350877193, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.05701754385964912, 0.06140350877192982, 0.07894736842105263, 0.9473684210526315, 0.7982456140350878, 0.07017543859649122, 0.11403508771929824, 0.06140350877192982, 0.05701754385964912, 0.04824561403508772, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.9473684210526315, 0.06578947368421052, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.03508771929824561, 0.03508771929824561, 0.039473684210526314, 0.039473684210526314, 0.043859649122807015, 0.039473684210526314, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.043859649122807015, 0.043859649122807015, 0.9210526315789473, 0.8157894736842105, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.04824561403508772, 0.04824561403508772, 0.04824561403508772, 0.043859649122807015, 0.043859649122807015, 0.04824561403508772, 0.05701754385964912, 0.05263157894736842, 0.05701754385964912, 0.05701754385964912, 0.9473684210526315, 0.04824561403508772, 0.05701754385964912, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.039473684210526314, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.039473684210526314, 0.039473684210526314, 0.043859649122807015, 0.05701754385964912, 0.05263157894736842, 0.08771929824561403, 0.2149122807017544, 0.20614035087719298, 0.2149122807017544, 0.2543859649122807, 0.3157894736842105, 0.3333333333333333, 0.40789473684210525, 0.42105263157894735, 0.5745614035087719, 0.5745614035087719, 0.5219298245614035, 0.6271929824561403, 0.6359649122807017, 0.6447368421052632, 0.6622807017543859, 0.6754385964912281, 0.6798245614035088, 0.6842105263157895, 0.6973684210526315, 0.6973684210526315, 0.6973684210526315, 0.7192982456140351, 0.7324561403508771, 0.7456140350877193, 0.7675438596491229, 0.7850877192982456, 0.8157894736842105, 0.8201754385964912, 0.868421052631579, 0.868421052631579, 0.8771929824561403, 0.881578947368421, 0.881578947368421, 0.8859649122807017, 0.8947368421052632, 0.9035087719298246, 0.9342105263157895, 0.9122807017543859, 0.8991228070175439, 0.8859649122807017, 0.8859649122807017, 0.881578947368421, 0.881578947368421, 0.8728070175438597, 0.868421052631579, 0.8640350877192983, 0.8201754385964912, 0.8026315789473685, 0.7719298245614035, 0.7587719298245614, 0.7324561403508771, 0.7280701754385965, 0.706140350877193, 0.6973684210526315, 0.6973684210526315, 0.6929824561403509, 0.6842105263157895, 0.6798245614035088, 0.6710526315789473, 0.6447368421052632, 0.6403508771929824, 0.6271929824561403, 0.6271929824561403, 0.25, 0.13157894736842105, 0.06578947368421052, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06578947368421052, 0.07017543859649122, 0.07456140350877193, 0.07456140350877193, 0.07894736842105263, 0.09649122807017543, 0.12719298245614036, 0.30701754385964913], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RED_N.gap.json b/pfam_gap_rates/RED_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc7109bcec5adcb1e697d1beb124eada20749190
--- /dev/null
+++ b/pfam_gap_rates/RED_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RGM_C.gap.json b/pfam_gap_rates/RGM_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..296d20e4daffa81720d7057548213dba606f8c40
--- /dev/null
+++ b/pfam_gap_rates/RGM_C.gap.json
@@ -0,0 +1 @@
+{"family": "RGM_C", "n_seqs": 105, "length": 184, "gap_rates": [0.11428571428571428, 0.11428571428571428, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.819047619047619, 0.7904761904761904, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.08571428571428572, 0.08571428571428572, 0.0761904761904762, 0.09523809523809523, 0.19047619047619047, 0.14285714285714285, 0.45714285714285713, 0.19047619047619047, 0.18095238095238095, 0.09523809523809523, 0.06666666666666667, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.0761904761904762, 0.0761904761904762, 0.06666666666666667, 0.06666666666666667, 0.19047619047619047, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.12380952380952381, 0.14285714285714285, 0.2, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.12380952380952381, 0.819047619047619, 0.8095238095238095, 0.1523809523809524, 0.11428571428571428, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.10476190476190476, 0.29523809523809524, 0.29523809523809524, 0.29523809523809524, 0.29523809523809524, 0.3238095238095238, 0.3333333333333333, 0.3333333333333333, 0.37142857142857144, 0.3619047619047619, 0.6285714285714286, 0.6476190476190476, 0.8, 0.8952380952380953, 0.9333333333333333, 0.8571428571428571, 0.6476190476190476, 0.638095238095238, 0.6190476190476191, 0.34285714285714286, 0.2857142857142857, 0.21904761904761905, 0.19047619047619047, 0.19047619047619047, 0.17142857142857143, 0.18095238095238095, 0.1619047619047619, 0.1523809523809524, 0.1523809523809524, 0.14285714285714285, 0.13333333333333333, 0.12380952380952381, 0.12380952380952381, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.4095238095238095, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.19047619047619047, 0.2, 0.20952380952380953, 0.23809523809523808, 0.23809523809523808, 0.3047619047619048, 0.3523809523809524], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RICTOR_M.gap.json b/pfam_gap_rates/RICTOR_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6435f92ce2c2560d851353b590cbc6d303ce583
--- /dev/null
+++ b/pfam_gap_rates/RICTOR_M.gap.json
@@ -0,0 +1 @@
+{"family": "RICTOR_M", "n_seqs": 226, "length": 116, "gap_rates": [0.8938053097345132, 0.584070796460177, 0.4778761061946903, 0.3938053097345133, 0.3053097345132743, 0.19469026548672566, 0.10176991150442478, 0.09734513274336283, 0.07964601769911504, 0.0752212389380531, 0.0752212389380531, 0.07079646017699115, 0.06637168141592921, 0.05752212389380531, 0.05752212389380531, 0.05752212389380531, 0.048672566371681415, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.03982300884955752, 0.03982300884955752, 0.03982300884955752, 0.03982300884955752, 0.03982300884955752, 0.03982300884955752, 0.03982300884955752, 0.03982300884955752, 0.03982300884955752, 0.03982300884955752, 0.035398230088495575, 0.03982300884955752, 0.035398230088495575, 0.03982300884955752, 0.03982300884955752, 0.035398230088495575, 0.035398230088495575, 0.030973451327433628, 0.030973451327433628, 0.03982300884955752, 0.030973451327433628, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.01327433628318584, 0.017699115044247787, 0.9424778761061947, 0.9424778761061947, 0.9424778761061947, 0.9424778761061947, 0.9424778761061947, 0.9424778761061947, 0.9424778761061947, 0.9424778761061947, 0.035398230088495575, 0.035398230088495575, 0.030973451327433628, 0.02654867256637168, 0.017699115044247787, 0.8716814159292036, 0.02654867256637168, 0.02654867256637168, 0.01327433628318584, 0.915929203539823, 0.9380530973451328, 0.9070796460176991, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.008849557522123894, 0.008849557522123894, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.017699115044247787, 0.022123893805309734, 0.02654867256637168, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.022123893805309734, 0.030973451327433628, 0.02654867256637168, 0.030973451327433628, 0.030973451327433628, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.05309734513274336, 0.06637168141592921, 0.07964601769911504, 0.11061946902654868, 0.2345132743362832, 0.6371681415929203], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RMMBL.gap.json b/pfam_gap_rates/RMMBL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..172b3ff9ecd25d9c4ac26baddf206f665ac174f3
--- /dev/null
+++ b/pfam_gap_rates/RMMBL.gap.json
@@ -0,0 +1 @@
+{"family": "RMMBL", "n_seqs": 3741, "length": 69, "gap_rates": [0.9195402298850575, 0.591018444266239, 0.5140336808340016, 0.4699278267842823, 0.4533547179898423, 0.41994119219460035, 0.384389200748463, 0.9342421812349639, 0.3293237102379043, 0.23148890670943598, 0.16385993049986636, 0.0545308740978348, 0.03020582731889869, 0.7329591018444266, 0.014434643143544507, 0.010425020048115477, 0.006682705159048383, 0.002673082063619353, 0.0024057738572574178, 0.0024057738572574178, 0.0021384656508954825, 0.0021384656508954825, 0.0018711574445335472, 0.0016038492381716118, 0.0013365410318096765, 0.0010692328254477412, 0.0008019246190858059, 0.0008019246190858059, 0.0005346164127238706, 0.0008019246190858059, 0.0013365410318096765, 0.0013365410318096765, 0.0005346164127238706, 0.0008019246190858059, 0.0008019246190858059, 0.7861534349104518, 0.7457898957497995, 0.0013365410318096765, 0.0013365410318096765, 0.0018711574445335472, 0.0021384656508954825, 0.0024057738572574178, 0.0037423148890670943, 0.008286554397219995, 0.01871157444533547, 0.033948142207965784, 0.03662122427158514, 0.03261160117615611, 0.0408981555733761, 0.04784816893878642, 0.052125100240577385, 0.05987703822507351, 0.06522320235231222, 0.07885592087677092, 0.09168671478214381, 0.5944934509489441, 0.21518310612135794, 0.23897353648757017, 0.27960438385458436, 0.3082063619353114, 0.9334402566158782, 0.9387864207431168, 0.9203421545041433, 0.44399893076717456, 0.557872226677359, 0.6201550387596899, 0.6615878107457899, 0.6933974873028602, 0.7169206094627105], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_A_bac.gap.json b/pfam_gap_rates/RNA_pol_A_bac.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2af90ede1b6ff66a8070c5b7da96f6bf5eece125
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_A_bac.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_A_bac", "n_seqs": 3112, "length": 158, "gap_rates": [0.7599614395886889, 0.6516709511568124, 0.6134318766066839, 0.75353470437018, 0.7516066838046273, 0.4607969151670951, 0.42577120822622105, 0.7490359897172236, 0.7438946015424165, 0.714974293059126, 0.6953727506426736, 0.6706298200514139, 0.5716580976863753, 0.5449871465295629, 0.05687660668380463, 0.02988431876606684, 0.02731362467866324, 0.02570694087403599, 0.02474293059125964, 0.02345758354755784, 0.021208226221079693, 0.017994858611825194, 0.017352185089974295, 0.01703084832904884, 0.016388174807197942, 0.021529562982005142, 0.017673521850899744, 0.016709511568123392, 0.018958868894601542, 0.017673521850899744, 0.01960154241645244, 0.17769922879177377, 0.1089331619537275, 0.05077120822622108, 0.03181233933161954, 0.030848329048843187, 0.02892030848329049, 0.02731362467866324, 0.02956298200514139, 0.2101542416452442, 0.87853470437018, 0.7419665809768637, 0.2570694087403599, 0.7034061696658098, 0.4138817480719794, 0.3184447300771208, 0.04209511568123393, 0.02217223650385604, 0.01960154241645244, 0.01960154241645244, 0.01992287917737789, 0.05109254498714653, 0.43541131105398456, 0.3309768637532134, 0.018958868894601542, 0.015102827763496144, 0.015102827763496144, 0.014781491002570694, 0.013817480719794344, 0.013817480719794344, 0.013817480719794344, 0.013817480719794344, 0.012532133676092546, 0.013496143958868894, 0.011889460154241645, 0.7622107969151671, 0.778598971722365, 0.8952442159383034, 0.9039203084832905, 0.9125964010282777, 0.9170951156812339, 0.9209511568123393, 0.9273778920308483, 0.9341259640102828, 0.9289845758354756, 0.9267352185089974, 0.9203084832904884, 0.9148457583547558, 0.9084190231362468, 0.9016709511568124, 0.868573264781491, 0.7644601542416453, 0.759318766066838, 0.011889460154241645, 0.011889460154241645, 0.011889460154241645, 0.012210796915167094, 0.012210796915167094, 0.012210796915167094, 0.012853470437017995, 0.021529562982005142, 0.6934447300771208, 0.872107969151671, 0.8772493573264781, 0.8888174807197944, 0.8929948586118251, 0.9029562982005142, 0.9476221079691517, 0.8965295629820051, 0.8904241645244216, 0.8811053984575835, 0.8756426735218509, 0.8608611825192802, 0.02313624678663239, 0.03245501285347044, 0.02924164524421594, 0.02988431876606684, 0.02988431876606684, 0.02956298200514139, 0.013496143958868894, 0.8846401028277635, 0.8884961439588689, 0.8968508997429306, 0.8984575835475579, 0.9154884318766067, 0.9299485861182519, 0.9447300771208226, 0.9399100257069408, 0.9264138817480719, 0.9032776349614395, 0.897172236503856, 0.8894601542416453, 0.8852827763496144, 0.8846401028277635, 0.013817480719794344, 0.014460154241645245, 0.015102827763496144, 0.015102827763496144, 0.015424164524421594, 0.015424164524421594, 0.015424164524421594, 0.015424164524421594, 0.015745501285347043, 0.016066838046272493, 0.018958868894601542, 0.016066838046272493, 0.017673521850899744, 0.018316195372750643, 0.9167737789203085, 0.018316195372750643, 0.018637532133676093, 0.018637532133676093, 0.018637532133676093, 0.018958868894601542, 0.018958868894601542, 0.019280205655526992, 0.02024421593830334, 0.02345758354755784, 0.02345758354755784, 0.02345758354755784, 0.02506426735218509, 0.02634961439588689, 0.040809768637532134, 0.06008997429305912, 0.1391388174807198, 0.3653598971722365, 0.7451799485861182, 0.7830976863753213], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rbc25.gap.json b/pfam_gap_rates/RNA_pol_Rbc25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f53d3a94693b5e3fda9de97e5f9e9ed0ede78f8
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rbc25.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rbc25", "n_seqs": 330, "length": 152, "gap_rates": [0.1393939393939394, 0.13333333333333333, 0.12121212121212122, 0.11212121212121212, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.10606060606060606, 0.10606060606060606, 0.10303030303030303, 0.09696969696969697, 0.09696969696969697, 0.09393939393939393, 0.09393939393939393, 0.09393939393939393, 0.09090909090909091, 0.08787878787878788, 0.08484848484848485, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.06666666666666667, 0.06666666666666667, 0.06060606060606061, 0.06363636363636363, 0.06363636363636363, 0.06060606060606061, 0.05757575757575758, 0.06363636363636363, 0.05757575757575758, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.051515151515151514, 0.051515151515151514, 0.051515151515151514, 0.051515151515151514, 0.05757575757575758, 0.05454545454545454, 0.05757575757575758, 0.06363636363636363, 0.09696969696969697, 0.051515151515151514, 0.045454545454545456, 0.04242424242424243, 0.03636363636363636, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.048484848484848485, 0.3333333333333333, 0.5333333333333333, 0.703030303030303, 0.8424242424242424, 0.8666666666666667, 0.8666666666666667, 0.8818181818181818, 0.9121212121212121, 0.9454545454545454, 0.9303030303030303, 0.8848484848484849, 0.8787878787878788, 0.8666666666666667, 0.8606060606060606, 0.793939393939394, 0.5484848484848485, 0.503030303030303, 0.045454545454545456, 0.045454545454545456, 0.04242424242424243, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.045454545454545456, 0.04242424242424243, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.051515151515151514, 0.05454545454545454, 0.05757575757575758, 0.06060606060606061, 0.07272727272727272, 0.07575757575757576, 0.08484848484848485, 0.19090909090909092, 0.17575757575757575, 0.16363636363636364, 0.11212121212121212, 0.11212121212121212, 0.1393939393939394, 0.14545454545454545, 0.15757575757575756, 0.17575757575757575, 0.5272727272727272, 0.5818181818181818, 0.6757575757575758, 0.7606060606060606, 0.8333333333333334, 0.8393939393939394, 0.8181818181818182, 0.9, 0.9272727272727272, 0.9363636363636364, 0.9484848484848485, 0.9333333333333333, 0.9121212121212121, 0.8787878787878788, 0.8242424242424242, 0.8, 0.7545454545454545, 0.7090909090909091, 0.6242424242424243, 0.5303030303030303, 0.4696969696969697, 0.403030303030303, 0.3424242424242424, 0.25757575757575757, 0.2515151515151515, 0.20909090909090908, 0.2, 0.19696969696969696, 0.2, 0.2, 0.20303030303030303, 0.20303030303030303, 0.20606060606060606, 0.20606060606060606, 0.20606060606060606, 0.20606060606060606, 0.20606060606060606, 0.20606060606060606, 0.20909090909090908, 0.20909090909090908, 0.21212121212121213, 0.21212121212121213, 0.21212121212121213, 0.21212121212121213, 0.21212121212121213, 0.21212121212121213, 0.21212121212121213, 0.21212121212121213, 0.21515151515151515, 0.21515151515151515, 0.21515151515151515], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb1_4.gap.json b/pfam_gap_rates/RNA_pol_Rpb1_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..122f59c7c492e7c567f2041647baa532eb29ea98
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb1_4.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb1_4", "n_seqs": 3247, "length": 116, "gap_rates": [0.6399753618724977, 0.4468740375731444, 0.3862026485987065, 0.33507853403141363, 0.29042192793347704, 0.25993224514936863, 0.401909454881429, 0.22266707730212504, 0.21681552202032645, 0.2140437326763166, 0.21219587311364335, 0.20788420080073913, 0.20542038805050816, 0.20234062211271944, 0.1971050200184786, 0.1881736987988913, 0.18201416692331382, 0.17246689251616878, 0.16045580535879272, 0.1515244841392054, 0.14628888204496457, 0.1392054203880505, 0.13058207576224207, 0.11056359716661533, 0.09146904835232522, 0.08222975053895903, 0.07945796119494919, 0.07052663997536188, 0.06806282722513089, 0.06775485063135202, 0.06467508469356328, 0.4364028333846628, 0.4080689867570065, 0.25654450261780104, 0.2679396365876193, 0.24176162611641516, 0.45672928857406836, 0.4114567292885741, 0.39020634431783185, 0.3757314444102248, 0.3781952571604558, 0.372959655066215, 0.37018786572220513, 0.3732676316599938, 0.39267015706806285, 0.3440098552510009, 0.8543270711425932, 0.21681552202032645, 0.8968278410840776, 0.9137665537419156, 0.9254696643055128, 0.9414844471820142, 0.9236218047428395, 0.9036033261472128, 0.8928241453649522, 0.37850323375423467, 0.009239297813366184, 0.008007391438250694, 0.008007391438250694, 0.0076994148444718205, 0.006775485063135201, 0.004003695719125347, 0.004003695719125347, 0.004311672312904219, 0.004311672312904219, 0.004311672312904219, 0.004311672312904219, 0.004311672312904219, 0.00554357868801971, 0.004003695719125347, 0.004311672312904219, 0.004003695719125347, 0.0033877425315676007, 0.0033877425315676007, 0.0036957191253464737, 0.003079765937788728, 0.0024638127502309825, 0.0024638127502309825, 0.0024638127502309825, 0.0024638127502309825, 0.0024638127502309825, 0.0033877425315676007, 0.0033877425315676007, 0.003079765937788728, 0.0033877425315676007, 0.00554357868801971, 0.008623344625808438, 0.22266707730212504, 0.3532491530643671, 0.38558669541114876, 0.4447182014166923, 0.532491530643671, 0.5780720665229443, 0.6008623344625809, 0.634431783184478, 0.6341238065906991, 0.6199568832768709, 0.607637819525716, 0.6067138897443795, 0.6048660301817061, 0.6042500769941485, 0.4595010779180782, 0.3738835848475516, 0.3717277486910995, 0.5931629196181091, 0.34924545734524176, 0.346165691407453, 0.35047736372035726, 0.3757314444102248, 0.3803510933169079, 0.38250692947336, 0.3883584847551586, 0.39020634431783185, 0.39328611025562055, 0.43332306744687404, 0.6526024022174315], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb1_6.gap.json b/pfam_gap_rates/RNA_pol_Rpb1_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0b27283718373f154f2cfb9dfadf199333ea099
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb1_6.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb1_6", "n_seqs": 395, "length": 206, "gap_rates": [0.17468354430379746, 0.1341772151898734, 0.09113924050632911, 0.09113924050632911, 0.09113924050632911, 0.09113924050632911, 0.09113924050632911, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08607594936708861, 0.09113924050632911, 0.09113924050632911, 0.09113924050632911, 0.09113924050632911, 0.09113924050632911, 0.08607594936708861, 0.08607594936708861, 0.08354430379746836, 0.08354430379746836, 0.08354430379746836, 0.08354430379746836, 0.08354430379746836, 0.08354430379746836, 0.08354430379746836, 0.08607594936708861, 0.08860759493670886, 0.09620253164556962, 0.9392405063291139, 0.11392405063291139, 0.14936708860759493, 0.13670886075949368, 0.1291139240506329, 0.4936708860759494, 0.4506329113924051, 0.189873417721519, 0.17215189873417722, 0.9088607594936708, 0.11645569620253164, 0.9443037974683545, 0.9443037974683545, 0.9443037974683545, 0.12151898734177215, 0.11645569620253164, 0.08860759493670886, 0.08860759493670886, 0.09113924050632911, 0.09367088607594937, 0.36455696202531646, 0.3569620253164557, 0.11645569620253164, 0.16455696202531644, 0.08607594936708861, 0.08354430379746836, 0.07848101265822785, 0.07341772151898734, 0.0810126582278481, 0.07341772151898734, 0.07088607594936709, 0.07088607594936709, 0.07088607594936709, 0.07088607594936709, 0.07341772151898734, 0.07088607594936709, 0.07088607594936709, 0.07088607594936709, 0.07088607594936709, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07088607594936709, 0.07088607594936709, 0.07088607594936709, 0.07341772151898734, 0.07341772151898734, 0.33164556962025316, 0.1518987341772152, 0.09873417721518987, 0.11392405063291139, 0.8556962025316456, 0.8379746835443038, 0.1949367088607595, 0.22784810126582278, 0.1569620253164557, 0.9493670886075949, 0.08607594936708861, 0.07341772151898734, 0.07088607594936709, 0.17468354430379746, 0.6177215189873417, 0.5949367088607594, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.060759493670886074, 0.060759493670886074, 0.060759493670886074, 0.060759493670886074, 0.060759493670886074, 0.060759493670886074, 0.060759493670886074, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.060759493670886074, 0.060759493670886074, 0.10632911392405063, 0.0810126582278481, 0.07848101265822785, 0.06582278481012659, 0.06329113924050633, 0.060759493670886074, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.060759493670886074, 0.06329113924050633, 0.06329113924050633, 0.06582278481012659, 0.060759493670886074, 0.060759493670886074, 0.06329113924050633, 0.06582278481012659, 0.06582278481012659, 0.06835443037974684, 0.06835443037974684, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.08860759493670886, 0.09367088607594937, 0.10379746835443038, 0.10632911392405063, 0.8911392405063291, 0.9367088607594937, 0.9493670886075949, 0.9493670886075949, 0.9493670886075949, 0.9493670886075949, 0.9417721518987342, 0.8911392405063291, 0.8911392405063291, 0.09620253164556962, 0.09620253164556962, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08354430379746836, 0.08607594936708861, 0.08607594936708861, 0.08354430379746836, 0.0810126582278481, 0.07848101265822785, 0.07848101265822785, 0.07848101265822785, 0.07848101265822785, 0.0759493670886076, 0.0759493670886076, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07088607594936709, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.0759493670886076, 0.0759493670886076, 0.0810126582278481, 0.07848101265822785, 0.0810126582278481, 0.07848101265822785, 0.07848101265822785, 0.07848101265822785, 0.07848101265822785, 0.0810126582278481, 0.0810126582278481, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.07848101265822785, 0.0810126582278481, 0.0810126582278481, 0.0810126582278481, 0.08354430379746836, 0.08354430379746836, 0.08607594936708861, 0.08607594936708861, 0.10379746835443038, 0.13670886075949368], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb2_3.gap.json b/pfam_gap_rates/RNA_pol_Rpb2_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..933b47c4e1256635ce4d9fe39145701a45e4a86a
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb2_3.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb2_3", "n_seqs": 3433, "length": 69, "gap_rates": [0.19749490241771045, 0.03961549665016021, 0.01893387707544422, 0.014855811243810078, 0.014273230410719488, 0.013690649577628895, 0.013399359161083601, 0.013399359161083601, 0.012525487911447713, 0.01077774541217594, 0.01077774541217594, 0.009903874162540053, 0.009903874162540053, 0.009903874162540053, 0.009903874162540053, 0.009903874162540053, 0.00932129332944946, 0.009030002912904166, 0.009030002912904166, 0.10253422662394407, 0.10777745412175939, 0.3422662394407224, 0.24584911156422953, 0.2408971744829595, 0.2362365278182348, 0.010195164579085349, 0.00815613166326828, 0.00815613166326828, 0.00815613166326828, 0.007864841246722983, 0.008447422079813574, 0.007573550830177687, 0.006990969997087096, 0.007282260413632392, 0.007864841246722983, 0.008447422079813574, 0.007864841246722983, 0.007864841246722983, 0.007282260413632392, 0.007282260413632392, 0.006990969997087096, 0.006117098747451209, 0.006117098747451209, 0.0066996795805418004, 0.0052432274978153216, 0.005534517914360618, 0.005825808330905913, 0.005825808330905913, 0.006117098747451209, 0.005825808330905913, 0.006117098747451209, 0.006117098747451209, 0.005825808330905913, 0.005825808330905913, 0.005825808330905913, 0.006408389163996504, 0.0066996795805418004, 0.007573550830177687, 0.006990969997087096, 0.007864841246722983, 0.007864841246722983, 0.007864841246722983, 0.007864841246722983, 0.008447422079813574, 0.010195164579085349, 0.013399359161083601, 0.031168074570346635, 0.055927759976696766, 0.19691232158461985], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_H2-Ydr279.gap.json b/pfam_gap_rates/RNase_H2-Ydr279.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78c2dda6130220ab9af316def96f2e2694f64b79
--- /dev/null
+++ b/pfam_gap_rates/RNase_H2-Ydr279.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_PH.gap.json b/pfam_gap_rates/RNase_PH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37c45617844b6332376a1d546e6c950c78d7af53
--- /dev/null
+++ b/pfam_gap_rates/RNase_PH.gap.json
@@ -0,0 +1 @@
+{"family": "RNase_PH", "n_seqs": 5000, "length": 155, "gap_rates": [0.5906, 0.34, 0.1868, 0.1414, 0.086, 0.0792, 0.0714, 0.0678, 0.065, 0.0604, 0.7086, 0.0828, 0.0776, 0.0742, 0.0468, 0.0436, 0.0418, 0.0378, 0.0364, 0.0336, 0.0328, 0.0288, 0.0284, 0.027, 0.0262, 0.0254, 0.0244, 0.0238, 0.0232, 0.023, 0.0222, 0.0222, 0.0216, 0.0214, 0.0218, 0.0216, 0.0222, 0.023, 0.0242, 0.9348, 0.9076, 0.4954, 0.3532, 0.3144, 0.0686, 0.071, 0.4628, 0.6524, 0.0748, 0.0938, 0.1106, 0.059, 0.715, 0.749, 0.9482, 0.7398, 0.6802, 0.3664, 0.3616, 0.0206, 0.0198, 0.0192, 0.0188, 0.0192, 0.0202, 0.04, 0.0382, 0.0394, 0.0448, 0.0442, 0.0586, 0.0552, 0.0516, 0.0492, 0.5456, 0.5634, 0.6898, 0.5586, 0.5348, 0.0942, 0.0896, 0.1554, 0.039, 0.0272, 0.021, 0.021, 0.0188, 0.0186, 0.0186, 0.0172, 0.0172, 0.0174, 0.0172, 0.0168, 0.0168, 0.0162, 0.0162, 0.0164, 0.0164, 0.0164, 0.0162, 0.0164, 0.0166, 0.0158, 0.0158, 0.0178, 0.882, 0.8862, 0.8884, 0.9074, 0.9028, 0.8874, 0.8836, 0.8666, 0.0184, 0.0414, 0.0194, 0.2278, 0.2748, 0.0274, 0.0154, 0.015, 0.015, 0.0154, 0.0156, 0.016, 0.016, 0.0164, 0.0166, 0.0166, 0.017, 0.0174, 0.0176, 0.7666, 0.7456, 0.021, 0.0204, 0.0204, 0.0208, 0.0208, 0.0212, 0.0218, 0.0218, 0.0216, 0.0222, 0.0226, 0.023, 0.0242, 0.0276, 0.03, 0.038, 0.0676, 0.1912, 0.2008, 0.2664], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_PH_C.gap.json b/pfam_gap_rates/RNase_PH_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02ed06b4d054e7c0e3352dc0e36d1ea8a7acb99a
--- /dev/null
+++ b/pfam_gap_rates/RNase_PH_C.gap.json
@@ -0,0 +1 @@
+{"family": "RNase_PH_C", "n_seqs": 5000, "length": 74, "gap_rates": [0.5856, 0.194, 0.0446, 0.0192, 0.015, 0.0114, 0.01, 0.0088, 0.008, 0.0072, 0.0072, 0.0054, 0.0068, 0.0044, 0.714, 0.777, 0.934, 0.7656, 0.6708, 0.0016, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002, 0.0, 0.3546, 0.3558, 0.027, 0.017, 0.223, 0.2192, 0.0014, 0.0006, 0.0006, 0.0008, 0.0008, 0.0014, 0.001, 0.0048, 0.0034, 0.0022, 0.006, 0.0038, 0.2774, 0.0042, 0.0036, 0.0042, 0.0048, 0.0054, 0.0058, 0.008, 0.01, 0.0622, 0.751, 0.25, 0.0158, 0.015, 0.0178, 0.0184, 0.019, 0.0204, 0.0226, 0.025, 0.026, 0.0314, 0.0382, 0.0478, 0.059, 0.1086, 0.2848, 0.7488], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RPAP1_C.gap.json b/pfam_gap_rates/RPAP1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ad1d054a75e7e418c6ca18b6127acb22c5a88d9
--- /dev/null
+++ b/pfam_gap_rates/RPAP1_C.gap.json
@@ -0,0 +1 @@
+{"family": "RPAP1_C", "n_seqs": 252, "length": 86, "gap_rates": [0.5753968253968254, 0.0873015873015873, 0.03968253968253968, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.027777777777777776, 0.3531746031746032, 0.8492063492063492, 0.8928571428571429, 0.9285714285714286, 0.9484126984126984, 0.8968253968253969, 0.873015873015873, 0.4365079365079365, 0.14682539682539683, 0.047619047619047616, 0.047619047619047616, 0.051587301587301584, 0.03968253968253968, 0.04365079365079365, 0.03571428571428571, 0.011904761904761904, 0.8531746031746031, 0.8650793650793651, 0.876984126984127, 0.9047619047619048, 0.9166666666666666, 0.9365079365079365, 0.9246031746031746, 0.9087301587301587, 0.8928571428571429, 0.873015873015873, 0.8611111111111112, 0.8531746031746031, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.015873015873015872, 0.01984126984126984, 0.24603174603174602, 0.04365079365079365, 0.015873015873015872, 0.0, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.011904761904761904, 0.011904761904761904, 0.047619047619047616, 0.1388888888888889, 0.27380952380952384], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RQC.gap.json b/pfam_gap_rates/RQC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e6f627a07fd1dba5b6dd7767d447ed4af75c775
--- /dev/null
+++ b/pfam_gap_rates/RQC.gap.json
@@ -0,0 +1 @@
+{"family": "RQC", "n_seqs": 1641, "length": 125, "gap_rates": [0.6837294332723949, 0.4448507007921999, 0.24070688604509446, 0.12126751980499695, 0.08043875685557587, 0.07190737355271176, 0.06337599024984765, 0.0578915295551493, 0.04631322364411944, 0.04021937842778794, 0.03717245581962218, 0.03351614868982328, 0.030469226081657527, 0.02437538086532602, 0.02315661182205972, 0.02254722730042657, 0.021937842778793418, 0.021328458257160267, 0.02010968921389397, 0.018281535648994516, 0.018890920170627667, 0.8281535648994516, 0.8811700182815356, 0.8372943327239488, 0.7946374162096282, 0.051188299817184646, 0.02376599634369287, 0.017062766605728214, 0.016453382084095063, 0.015234613040828763, 0.015234613040828763, 0.014015843997562462, 0.01340645947592931, 0.01340645947592931, 0.012797074954296161, 0.012797074954296161, 0.012797074954296161, 0.012797074954296161, 0.012797074954296161, 0.012797074954296161, 0.021937842778793418, 0.020719073735527116, 0.021328458257160267, 0.018890920170627667, 0.02437538086532602, 0.02010968921389397, 0.016453382084095063, 0.014015843997562462, 0.020719073735527116, 0.08470444850700792, 0.04753199268738574, 0.03534430225472273, 0.03290676416819013, 0.031687995124923825, 0.029250457038391225, 0.015234613040828763, 0.015234613040828763, 0.014015843997562462, 0.010968921389396709, 0.010359536867763558, 0.010359536867763558, 0.014015843997562462, 0.01157830591102986, 0.010359536867763558, 0.012797074954296161, 0.01157830591102986, 0.010359536867763558, 0.010968921389396709, 0.010968921389396709, 0.010359536867763558, 0.010359536867763558, 0.010359536867763558, 0.01157830591102986, 0.01218769043266301, 0.01218769043266301, 0.01340645947592931, 0.014015843997562462, 0.014015843997562462, 0.014625228519195612, 0.015234613040828763, 0.015234613040828763, 0.9329677026203534, 0.017672151127361365, 0.026203534430225474, 0.021937842778793418, 0.04692260816575259, 0.04875076173065204, 0.7928092626447288, 0.8184034125533212, 0.9219987812309567, 0.8525289457647776, 0.8049969530773918, 0.7574649603900061, 0.1194393662400975, 0.04631322364411944, 0.042656916514320534, 0.8653260207190737, 0.04204753199268738, 0.043875685557586835, 0.044485070079219986, 0.04692260816575259, 0.04814137720901889, 0.050578915295551495, 0.05362583790371724, 0.05850091407678245, 0.05971968312004875, 0.06398537477148081, 0.06520414381474711, 0.06703229737964655, 0.0712979890310786, 0.08592321755027423, 0.09811090798293723, 0.11761121267519806, 0.12126751980499695, 0.13040828762949422, 0.14076782449725778, 0.1505179768433882, 0.16697135892748324, 0.19134673979280925, 0.21755027422303475, 0.2571602681291895, 0.37233394271785497, 0.5283363802559415, 0.7318708104814138, 0.9317489335770871], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RST.gap.json b/pfam_gap_rates/RST.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33e31dec5d461c7e2ad4a06e055377c8501c0e5b
--- /dev/null
+++ b/pfam_gap_rates/RST.gap.json
@@ -0,0 +1 @@
+{"family": "RST", "n_seqs": 172, "length": 67, "gap_rates": [0.8546511627906976, 0.45348837209302323, 0.36627906976744184, 0.2441860465116279, 0.1686046511627907, 0.16279069767441862, 0.14534883720930233, 0.12209302325581395, 0.06395348837209303, 0.06395348837209303, 0.05232558139534884, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.03488372093023256, 0.03488372093023256, 0.046511627906976744, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.040697674418604654, 0.023255813953488372, 0.011627906976744186, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.0, 0.0, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.023255813953488372, 0.023255813953488372, 0.03488372093023256, 0.08139534883720931, 0.10465116279069768, 0.25, 0.9186046511627907], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RTA1.gap.json b/pfam_gap_rates/RTA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f95394ca66d8dd30ad06a3613c8ecd1a359266a9
--- /dev/null
+++ b/pfam_gap_rates/RTA1.gap.json
@@ -0,0 +1 @@
+{"family": "RTA1", "n_seqs": 1103, "length": 253, "gap_rates": [0.5684496826835902, 0.314596554850408, 0.2230281051677244, 0.18041704442429737, 0.16772438803263826, 0.1559383499546691, 0.14959202175883954, 0.1468721668177697, 0.14233907524932005, 0.13780598368087035, 0.13689936536718042, 0.13689936536718042, 0.13689936536718042, 0.1359927470534905, 0.13689936536718042, 0.13689936536718042, 0.13689936536718042, 0.13417951042611062, 0.13055303717135086, 0.128739800543971, 0.13055303717135086, 0.7742520398912058, 0.6854034451495921, 0.6754306436990027, 0.3200362647325476, 0.3118766999093382, 0.28014505893019037, 0.1214868540344515, 0.11695376246600181, 0.1115140525838622, 0.10970081595648232, 0.10879419764279238, 0.10516772438803264, 0.10516772438803264, 0.10063463281958296, 0.09972801450589303, 0.09882139619220308, 0.09700815956482321, 0.09610154125113328, 0.09156844968268359, 0.09156844968268359, 0.09066183136899365, 0.08794197642792384, 0.08522212148685404, 0.08250226654578423, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RTP1_C1.gap.json b/pfam_gap_rates/RTP1_C1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2e4e96030836b76e6bdea4b161cbc61e188fac5
--- /dev/null
+++ b/pfam_gap_rates/RTP1_C1.gap.json
@@ -0,0 +1 @@
+{"family": "RTP1_C1", "n_seqs": 215, "length": 146, "gap_rates": [0.5674418604651162, 0.30697674418604654, 0.22790697674418606, 0.2, 0.19069767441860466, 0.18604651162790697, 0.18604651162790697, 0.17674418604651163, 0.11627906976744186, 0.06976744186046512, 0.04186046511627907, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.3813953488372093, 0.37209302325581395, 0.7302325581395349, 0.8232558139534883, 0.8511627906976744, 0.8744186046511628, 0.9302325581395349, 0.9395348837209302, 0.8883720930232558, 0.8697674418604651, 0.8372093023255814, 0.7767441860465116, 0.7069767441860465, 0.027906976744186046, 0.023255813953488372, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.013953488372093023, 0.009302325581395349, 0.009302325581395349, 0.009302325581395349, 0.009302325581395349, 0.9488372093023256, 0.9488372093023256, 0.9488372093023256, 0.9488372093023256, 0.009302325581395349, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.009302325581395349, 0.009302325581395349, 0.009302325581395349, 0.009302325581395349, 0.004651162790697674, 0.004651162790697674, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07441860465116279, 0.0, 0.0, 0.004651162790697674, 0.0, 0.0, 0.004651162790697674, 0.004651162790697674, 0.0, 0.0, 0.0, 0.0, 0.0, 0.586046511627907, 0.6325581395348837, 0.6930232558139535, 0.7534883720930232, 0.8372093023255814, 0.8558139534883721, 0.8744186046511628, 0.8976744186046511, 0.9255813953488372, 0.9488372093023256, 0.9162790697674419, 0.8837209302325582, 0.8651162790697674, 0.8418604651162791, 0.8232558139534883, 0.7302325581395349, 0.6744186046511628, 0.6093023255813953, 0.5674418604651162, 0.23255813953488372, 0.20930232558139536, 0.027906976744186046, 0.023255813953488372, 0.013953488372093023, 0.013953488372093023, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.009302325581395349, 0.018604651162790697, 0.023255813953488372, 0.05581395348837209, 0.07906976744186046, 0.09767441860465116, 0.7441860465116279], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RVT_N.gap.json b/pfam_gap_rates/RVT_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25fa19ba6603ff58141120a25cde61b63ce7989b
--- /dev/null
+++ b/pfam_gap_rates/RVT_N.gap.json
@@ -0,0 +1 @@
+{"family": "RVT_N", "n_seqs": 376, "length": 83, "gap_rates": [0.07180851063829788, 0.06648936170212766, 0.05585106382978723, 0.05585106382978723, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.04521276595744681, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.0398936170212766, 0.0398936170212766, 0.0398936170212766, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.034574468085106384, 0.034574468085106384, 0.034574468085106384, 0.034574468085106384, 0.034574468085106384, 0.02127659574468085, 0.018617021276595744, 0.018617021276595744, 0.015957446808510637, 0.015957446808510637, 0.015957446808510637, 0.018617021276595744, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.018617021276595744, 0.02127659574468085, 0.02127659574468085, 0.023936170212765957, 0.023936170212765957, 0.1276595744680851, 0.13031914893617022, 0.13031914893617022, 0.1276595744680851, 0.425531914893617, 0.13297872340425532, 0.1356382978723404, 0.1356382978723404, 0.14095744680851063, 0.14361702127659576, 0.14361702127659576, 0.14361702127659576, 0.14361702127659576, 0.14095744680851063, 0.14095744680851063, 0.14095744680851063, 0.14095744680851063, 0.14095744680851063, 0.14095744680851063, 0.14627659574468085, 0.14627659574468085, 0.14627659574468085, 0.14627659574468085, 0.14627659574468085, 0.15159574468085107, 0.15159574468085107, 0.15159574468085107, 0.15425531914893617, 0.16489361702127658, 0.2127659574468085, 0.30319148936170215, 0.5159574468085106], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rab3-GTPase_cat.gap.json b/pfam_gap_rates/Rab3-GTPase_cat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5e843225c784217642c39187efa24634601d6c8
--- /dev/null
+++ b/pfam_gap_rates/Rab3-GTPase_cat.gap.json
@@ -0,0 +1 @@
+{"family": "Rab3-GTPase_cat", "n_seqs": 201, "length": 173, "gap_rates": [0.9054726368159204, 0.6467661691542289, 0.4228855721393035, 0.2835820895522388, 0.2537313432835821, 0.24378109452736318, 0.24378109452736318, 0.23880597014925373, 0.22885572139303484, 0.22388059701492538, 0.23880597014925373, 0.208955223880597, 0.1791044776119403, 0.1791044776119403, 0.1691542288557214, 0.17412935323383086, 0.15920398009950248, 0.15920398009950248, 0.8557213930348259, 0.15422885572139303, 0.14427860696517414, 0.14427860696517414, 0.14427860696517414, 0.13930348258706468, 0.13930348258706468, 0.13930348258706468, 0.13930348258706468, 0.13930348258706468, 0.13432835820895522, 0.12935323383084577, 0.11442786069651742, 0.09950248756218906, 0.10945273631840796, 0.10945273631840796, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.0945273631840796, 0.0945273631840796, 0.0945273631840796, 0.09950248756218906, 0.09950248756218906, 0.08955223880597014, 0.0845771144278607, 0.08955223880597014, 0.08955223880597014, 0.0945273631840796, 0.3333333333333333, 0.4079601990049751, 0.40298507462686567, 0.44776119402985076, 0.3482587064676617, 0.2935323383084577, 0.2885572139303483, 0.2885572139303483, 0.2935323383084577, 0.2835820895522388, 0.26865671641791045, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.07462686567164178, 0.06965174129353234, 0.05970149253731343, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.04975124378109453, 0.05472636815920398, 0.05472636815920398, 0.05970149253731343, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06965174129353234, 0.06965174129353234, 0.06965174129353234, 0.06965174129353234, 0.07462686567164178, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.08955223880597014, 0.0845771144278607, 0.07960199004975124, 0.07960199004975124, 0.0845771144278607, 0.0845771144278607, 0.08955223880597014, 0.11940298507462686, 0.12935323383084577, 0.1890547263681592, 0.20398009950248755, 0.208955223880597, 0.263681592039801, 0.2736318407960199, 0.2935323383084577, 0.3383084577114428, 0.4228855721393035, 0.44776119402985076, 0.5472636815920398, 0.5771144278606966, 0.6417910447761194, 0.6368159203980099, 0.6218905472636815, 0.6169154228855721, 0.5522388059701493, 0.3283582089552239, 0.8059701492537313, 0.8507462686567164, 0.9104477611940298, 0.9303482587064676, 0.9303482587064676, 0.8855721393034826, 0.8159203980099502, 0.7611940298507462, 0.13432835820895522, 0.1044776119402985, 0.10945273631840796, 0.10945273631840796, 0.10945273631840796, 0.10945273631840796, 0.0945273631840796, 0.08955223880597014, 0.0945273631840796, 0.8955223880597015, 0.11940298507462686, 0.09950248756218906, 0.08955223880597014, 0.08955223880597014, 0.0945273631840796, 0.0945273631840796, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.0945273631840796, 0.09950248756218906, 0.0945273631840796, 0.0945273631840796, 0.0945273631840796, 0.0945273631840796, 0.09950248756218906, 0.09950248756218906, 0.09950248756218906, 0.09950248756218906, 0.09950248756218906, 0.09950248756218906, 0.09950248756218906, 0.09950248756218906, 0.1044776119402985, 0.1044776119402985, 0.10945273631840796, 0.11442786069651742, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.13930348258706468, 0.39303482587064675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rab5ip.gap.json b/pfam_gap_rates/Rab5ip.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d10bc6e5d713c23d71242bd82b74e1532c55cd0
--- /dev/null
+++ b/pfam_gap_rates/Rab5ip.gap.json
@@ -0,0 +1 @@
+{"family": "Rab5ip", "n_seqs": 394, "length": 100, "gap_rates": [0.5228426395939086, 0.12436548223350254, 0.07614213197969544, 0.0583756345177665, 0.03553299492385787, 0.025380710659898477, 0.02284263959390863, 0.017766497461928935, 0.015228426395939087, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.01015228426395939, 0.01015228426395939, 0.007614213197969543, 0.007614213197969543, 0.007614213197969543, 0.007614213197969543, 0.007614213197969543, 0.007614213197969543, 0.007614213197969543, 0.007614213197969543, 0.007614213197969543, 0.0025380710659898475, 0.0025380710659898475, 0.0025380710659898475, 0.0025380710659898475, 0.007614213197969543, 0.005076142131979695, 0.01015228426395939, 0.01015228426395939, 0.02030456852791878, 0.01015228426395939, 0.007614213197969543, 0.007614213197969543, 0.01015228426395939, 0.012690355329949238, 0.012690355329949238, 0.007614213197969543, 0.007614213197969543, 0.007614213197969543, 0.24873096446700507, 0.3147208121827411, 0.04314720812182741, 0.04060913705583756, 0.050761421319796954, 0.15736040609137056, 0.04568527918781726, 0.03553299492385787, 0.9187817258883249, 0.9213197969543148, 0.9238578680203046, 0.9238578680203046, 0.9289340101522843, 0.9289340101522843, 0.9238578680203046, 0.9213197969543148, 0.9213197969543148, 0.9137055837563451, 0.02284263959390863, 0.03299492385786802, 0.9390862944162437, 0.9441624365482234, 0.9390862944162437, 0.9289340101522843, 0.030456852791878174, 0.030456852791878174, 0.03553299492385787, 0.04060913705583756, 0.949238578680203, 0.949238578680203, 0.949238578680203, 0.949238578680203, 0.5786802030456852, 0.12436548223350254, 0.1649746192893401, 0.027918781725888325, 0.02284263959390863, 0.02284263959390863, 0.06852791878172589, 0.02284263959390863, 0.02284263959390863, 0.02284263959390863, 0.025380710659898477, 0.025380710659898477, 0.03299492385786802, 0.03299492385786802, 0.03553299492385787, 0.06091370558375635, 0.06598984771573604, 0.07106598984771574, 0.08629441624365482, 0.10913705583756345, 0.116751269035533, 0.12944162436548223, 0.17258883248730963, 0.20812182741116753, 0.24111675126903553], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rad51.gap.json b/pfam_gap_rates/Rad51.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f15563c2612cdedad4b8339989019cb30137eb28
--- /dev/null
+++ b/pfam_gap_rates/Rad51.gap.json
@@ -0,0 +1 @@
+{"family": "Rad51", "n_seqs": 1599, "length": 322, "gap_rates": [0.8198874296435272, 0.6541588492808005, 0.624765478424015, 0.6066291432145091, 0.5884928080050031, 0.5816135084427767, 0.5772357723577236, 0.5697310819262039, 0.5641025641025641, 0.5522201375859912, 0.5403377110694184, 0.5240775484677924, 0.5065666041275797, 0.4896810506566604, 0.47654784240150094, 0.4646654158849281, 0.434021263289556, 0.34083802376485306, 0.2801751094434021, 0.2689180737961226, 0.2614133833646029, 0.2564102564102564, 0.24640400250156347, 0.241400875547217, 0.23452157598499063, 0.23076923076923078, 0.2270168855534709, 0.22388993120700437, 0.22138836772983114, 0.2176360225140713, 0.20888055034396497, 0.21075672295184492, 0.20512820512820512, 0.19699812382739212, 0.1894934333958724, 0.18636647904940587, 0.16260162601626016, 0.16197623514696685, 0.15447154471544716, 0.15259537210756724, 0.15196998123827393, 0.15447154471544716, 0.15634771732332708, 0.15572232645403378, 0.15634771732332708, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Radial_spoke.gap.json b/pfam_gap_rates/Radial_spoke.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32af5d63d4ab37f1d7531e149cf2cef479bda2ee
--- /dev/null
+++ b/pfam_gap_rates/Radial_spoke.gap.json
@@ -0,0 +1 @@
+{"family": "Radial_spoke", "n_seqs": 343, "length": 635, "gap_rates": [0.8017492711370262, 0.7434402332361516, 0.7026239067055393, 0.6909620991253644, 0.6676384839650146, 0.6443148688046647, 0.6355685131195336, 0.6326530612244898, 0.6209912536443148, 0.6180758017492711, 0.7463556851311953, 0.60932944606414, 0.5889212827988338, 0.5801749271137027, 0.577259475218659, 0.5714285714285714, 0.5685131195335277, 0.5626822157434402, 0.5626822157434402, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5626822157434402, 0.5568513119533528, 0.5568513119533528, 0.5568513119533528, 0.5626822157434402, 0.5714285714285714, 0.5539358600583091, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ran_BP1.gap.json b/pfam_gap_rates/Ran_BP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad83c80050be2f2f3550da79b607c0b818d6d986
--- /dev/null
+++ b/pfam_gap_rates/Ran_BP1.gap.json
@@ -0,0 +1 @@
+{"family": "Ran_BP1", "n_seqs": 1228, "length": 128, "gap_rates": [0.5773615635179153, 0.34446254071661236, 0.28338762214983715, 0.21986970684039087, 0.17100977198697068, 0.15798045602605862, 0.13843648208469056, 0.10586319218241043, 0.09446254071661238, 0.08876221498371335, 0.08306188925081433, 0.08224755700325732, 0.07980456026058631, 0.07736156351791532, 0.0749185667752443, 0.0724755700325733, 0.07003257328990228, 0.06921824104234528, 0.06840390879478828, 0.07084690553745929, 0.11400651465798045, 0.11970684039087948, 0.10097719869706841, 0.16449511400651465, 0.20684039087947884, 0.1473941368078176, 0.8566775244299675, 0.9201954397394136, 0.8509771986970684, 0.06921824104234528, 0.05130293159609121, 0.050488599348534204, 0.052931596091205214, 0.05211726384364821, 0.05211726384364821, 0.052931596091205214, 0.05211726384364821, 0.0496742671009772, 0.0496742671009772, 0.04723127035830619, 0.052931596091205214, 0.05211726384364821, 0.07084690553745929, 0.0724755700325733, 0.0749185667752443, 0.08061889250814332, 0.08876221498371335, 0.07899022801302931, 0.9364820846905537, 0.8322475570032574, 0.06270358306188925, 0.05863192182410423, 0.05863192182410423, 0.05863192182410423, 0.06026058631921824, 0.061074918566775244, 0.059446254071661236, 0.061074918566775244, 0.0724755700325733, 0.06596091205211727, 0.06921824104234528, 0.059446254071661236, 0.06188925081433225, 0.06188925081433225, 0.061074918566775244, 0.06026058631921824, 0.06270358306188925, 0.06270358306188925, 0.061074918566775244, 0.06433224755700326, 0.06596091205211727, 0.06351791530944625, 0.06514657980456026, 0.06351791530944625, 0.06514657980456026, 0.07003257328990228, 0.08306188925081433, 0.1001628664495114, 0.13517915309446255, 0.16612377850162866, 0.16123778501628663, 0.1783387622149837, 0.1775244299674267, 0.16449511400651465, 0.1473941368078176, 0.13273615635179153, 0.12866449511400652, 0.13273615635179153, 0.14169381107491857, 0.23371335504885993, 0.21416938110749187, 0.742671009771987, 0.18811074918566775, 0.16286644951140064, 0.15065146579804561, 0.1457654723127036, 0.15146579804560262, 0.15798045602605862, 0.15798045602605862, 0.1563517915309446, 0.15553745928338764, 0.15228013029315962, 0.16123778501628663, 0.16856677524429967, 0.16368078175895764, 0.15960912052117263, 0.16042345276872963, 0.16368078175895764, 0.16530944625407165, 0.16775244299674266, 0.1734527687296417, 0.18078175895765472, 0.18159609120521172, 0.18566775244299674, 0.1970684039087948, 0.1995114006514658, 0.20602605863192183, 0.20684039087947884, 0.21498371335504887, 0.22149837133550487, 0.2247557003257329, 0.23778501628664495, 0.26384364820846906, 0.3004885993485342, 0.3754071661237785, 0.4731270358306189, 0.6254071661237784, 0.9413680781758957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ras.gap.json b/pfam_gap_rates/Ras.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..696da5856e00381582db48ca0efadb944e8898ed
--- /dev/null
+++ b/pfam_gap_rates/Ras.gap.json
@@ -0,0 +1 @@
+{"family": "Ras", "n_seqs": 5000, "length": 181, "gap_rates": [0.2858, 0.225, 0.2136, 0.1908, 0.188, 0.1868, 0.1842, 0.178, 0.1726, 0.1688, 0.168, 0.1668, 0.1648, 0.1624, 0.1598, 0.1578, 0.1544, 0.152, 0.1506, 0.1498, 0.147, 0.1476, 0.148, 0.1482, 0.1444, 0.1436, 0.1444, 0.1456, 0.1386, 0.1338, 0.1324, 0.1318, 0.4334, 0.1476, 0.127, 0.1238, 0.1234, 0.1222, 0.1208, 0.121, 0.1202, 0.1198, 0.1178, 0.1168, 0.9396, 0.8754, 0.1152, 0.1148, 0.1138, 0.113, 0.1132, 0.1116, 0.1102, 0.1102, 0.1112, 0.1124, 0.116, 0.1176, 0.1198, 0.1152, 0.1156, 0.12, 0.1256, 0.1204, 0.1194, 0.1154, 0.1124, 0.1074, 0.1054, 0.0974, 0.0958, 0.0928, 0.086, 0.083, 0.079, 0.0784, 0.0788, 0.078, 0.077, 0.0766, 0.077, 0.077, 0.0806, 0.0804, 0.0748, 0.0744, 0.0754, 0.0754, 0.075, 0.0752, 0.0744, 0.0744, 0.0752, 0.8236, 0.074, 0.0758, 0.0754, 0.0766, 0.0764, 0.077, 0.0764, 0.081, 0.0834, 0.085, 0.0866, 0.8478, 0.9022, 0.875, 0.6908, 0.2746, 0.138, 0.087, 0.0822, 0.0794, 0.0764, 0.0768, 0.0756, 0.0762, 0.076, 0.077, 0.0784, 0.0794, 0.0798, 0.08, 0.096, 0.7478, 0.7908, 0.8268, 0.8438, 0.8506, 0.8692, 0.8664, 0.8466, 0.8414, 0.819, 0.7766, 0.6976, 0.1788, 0.1008, 0.0902, 0.0924, 0.0948, 0.0988, 0.0984, 0.1016, 0.1036, 0.102, 0.1272, 0.1032, 0.105, 0.1054, 0.1078, 0.1114, 0.114, 0.7406, 0.1172, 0.1194, 0.1202, 0.1214, 0.1218, 0.1212, 0.122, 0.1232, 0.1242, 0.1254, 0.128, 0.1326, 0.1342, 0.1366, 0.14, 0.142, 0.1456, 0.15, 0.1538, 0.159, 0.1648, 0.1806, 0.2144, 0.2622, 0.3398, 0.6264], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RasGEF_N.gap.json b/pfam_gap_rates/RasGEF_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6464b4c38cd82636941d4670eb6f20bc01d84a4
--- /dev/null
+++ b/pfam_gap_rates/RasGEF_N.gap.json
@@ -0,0 +1 @@
+{"family": "RasGEF_N", "n_seqs": 1545, "length": 152, "gap_rates": [0.8427184466019417, 0.26407766990291265, 0.16440129449838187, 0.09902912621359224, 0.07055016181229773, 0.05954692556634304, 0.04660194174757282, 0.040776699029126215, 0.030420711974110032, 0.0284789644012945, 0.0284789644012945, 0.027831715210355986, 0.027184466019417475, 0.025889967637540454, 0.02459546925566343, 0.02394822006472492, 0.022653721682847898, 0.565695792880259, 0.07961165048543689, 0.06796116504854369, 0.01488673139158576, 0.859546925566343, 0.915210355987055, 0.9333333333333333, 0.9242718446601942, 0.9029126213592233, 0.8161812297734627, 0.011650485436893204, 0.010355987055016181, 0.9080906148867314, 0.008414239482200648, 0.007119741100323625, 0.006472491909385114, 0.005825242718446602, 0.005825242718446602, 0.005825242718446602, 0.005825242718446602, 0.005825242718446602, 0.005177993527508091, 0.004530744336569579, 0.003883495145631068, 0.003883495145631068, 0.003883495145631068, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.0025889967637540453, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.004530744336569579, 0.005177993527508091, 0.005825242718446602, 0.006472491909385114, 0.006472491909385114, 0.009708737864077669, 0.2504854368932039, 0.8498381877022654, 0.8951456310679612, 0.915210355987055, 0.9249190938511327, 0.9333333333333333, 0.9423948220064725, 0.9462783171521035, 0.9398058252427185, 0.9288025889967637, 0.919093851132686, 0.9055016181229774, 0.883495145631068, 0.8122977346278317, 0.15857605177993528, 0.18511326860841423, 0.16957928802588998, 0.1203883495145631, 0.10744336569579288, 0.10097087378640776, 0.09449838187702266, 0.10161812297734628, 0.1268608414239482, 0.1650485436893204, 0.6621359223300971, 0.6103559870550161, 0.8466019417475729, 0.8647249190938512, 0.8744336569579289, 0.8919093851132686, 0.9061488673139159, 0.9184466019417475, 0.9462783171521035, 0.9229773462783172, 0.913915857605178, 0.8964401294498382, 0.883495145631068, 0.8686084142394822, 0.858252427184466, 0.8355987055016181, 0.5728155339805825, 0.5016181229773463, 0.49385113268608416, 0.4517799352750809, 0.42265372168284787, 0.3786407766990291, 0.3482200647249191, 0.32233009708737864, 0.26019417475728157, 0.19611650485436893, 0.9275080906148867, 0.9365695792880259, 0.9411003236245955, 0.9462783171521035, 0.9495145631067962, 0.943042071197411, 0.9378640776699029, 0.9300970873786408, 0.9223300970873787, 0.12750809061488674, 0.11262135922330097, 0.10550161812297734, 0.0912621359223301, 0.09190938511326861, 0.09579288025889968, 0.09579288025889968, 0.1029126213592233, 0.10679611650485436, 0.10744336569579288, 0.113915857605178, 0.11326860841423948, 0.1145631067961165, 0.11650485436893204, 0.12233009708737864, 0.13333333333333333, 0.1313915857605178, 0.13398058252427184, 0.8317152103559871, 0.1825242718446602, 0.16893203883495145, 0.1656957928802589, 0.1766990291262136, 0.1948220064724919, 0.24854368932038834, 0.39611650485436894, 0.8919093851132686, 0.8724919093851132, 0.3145631067961165, 0.3300970873786408, 0.37928802588996763, 0.42071197411003236, 0.47055016181229775, 0.5611650485436893, 0.6414239482200648, 0.7197411003236246], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RecQ_Zn_bind.gap.json b/pfam_gap_rates/RecQ_Zn_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c83ce9d2165c2261ad43828e1a3ddac8a7bc94e0
--- /dev/null
+++ b/pfam_gap_rates/RecQ_Zn_bind.gap.json
@@ -0,0 +1 @@
+{"family": "RecQ_Zn_bind", "n_seqs": 2531, "length": 81, "gap_rates": [0.8822599762939549, 0.3472935598577637, 0.2765705254839984, 0.2738048202291584, 0.2718293164757013, 0.2662979059660213, 0.2599762939549585, 0.2500987751876729, 0.24377716317661002, 0.2386408534176215, 0.23468984591070724, 0.3085736862900039, 0.3820624259186092, 0.8546029237455551, 0.8779138680363493, 0.8976689055709206, 0.9225602528644804, 0.9111023310944291, 0.8893717898064006, 0.8684314500197551, 0.798893717898064, 0.3330699328328724, 0.28921374950612405, 0.3113393915448439, 0.22125642038719873, 0.14184116949822204, 0.08692216515211379, 0.05847491110233109, 0.04385618332674832, 0.036744369814302645, 0.03121295930462268, 0.027261951797708416, 0.024891347293559858, 0.012643224022125641, 0.011062821019359936, 0.0075069142631371, 0.005531410509679968, 0.0039510075069142635, 0.002765705254839984, 0.002370604504148558, 0.0015804030027657052, 0.0015804030027657052, 0.0015804030027657052, 0.1126037139470565, 0.008297115764519953, 0.01935993678387989, 0.009482418016594232, 0.5436586329514026, 0.0003951007506914263, 0.0003951007506914263, 0.0003951007506914263, 0.0007902015013828526, 0.0, 0.0, 0.0003951007506914263, 0.0007902015013828526, 0.001185302252074279, 0.001185302252074279, 0.001185302252074279, 0.0035559067562228367, 0.12208613196365073, 0.07546424338206242, 0.02568154879494271, 0.02133544053733702, 0.04543658632951403, 0.8893717898064006, 0.9363887791386803, 0.9435005926511261, 0.924930857368629, 0.8593441327538522, 0.45871197155274596, 0.016594231529039907, 0.8522323192414065, 0.06598182536546819, 0.06598182536546819, 0.8688265507704465, 0.020150138285262742, 0.020545239035954167, 0.04267088107467404, 0.04780719083366258, 0.38798893717898064], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Reeler.gap.json b/pfam_gap_rates/Reeler.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0416fb1a78925d611a7983373a3b24a09d43d73f
--- /dev/null
+++ b/pfam_gap_rates/Reeler.gap.json
@@ -0,0 +1 @@
+{"family": "Reeler", "n_seqs": 450, "length": 161, "gap_rates": [0.5577777777777778, 0.5533333333333333, 0.5444444444444444, 0.54, 0.4822222222222222, 0.4688888888888889, 0.4622222222222222, 0.4066666666666667, 0.43777777777777777, 0.52, 0.92, 0.8, 0.5933333333333334, 0.5555555555555556, 0.4866666666666667, 0.5133333333333333, 0.6688888888888889, 0.6, 0.7022222222222222, 0.34, 0.26666666666666666, 0.24444444444444444, 0.2222222222222222, 0.9311111111111111, 0.9377777777777778, 0.9355555555555556, 0.9222222222222223, 0.20666666666666667, 0.9444444444444444, 0.20444444444444446, 0.20666666666666667, 0.24, 0.2222222222222222, 0.2222222222222222, 0.9355555555555556, 0.8977777777777778, 0.21777777777777776, 0.19333333333333333, 0.16, 0.8466666666666667, 0.9044444444444445, 0.9311111111111111, 0.9244444444444444, 0.8933333333333333, 0.8377777777777777, 0.13777777777777778, 0.1288888888888889, 0.1288888888888889, 0.12444444444444444, 0.11777777777777777, 0.11333333333333333, 0.10666666666666667, 0.09777777777777778, 0.08444444444444445, 0.08444444444444445, 0.08444444444444445, 0.8266666666666667, 0.8533333333333334, 0.8044444444444444, 0.5622222222222222, 0.4266666666666667, 0.37333333333333335, 0.24, 0.08666666666666667, 0.07111111111111111, 0.06666666666666667, 0.06444444444444444, 0.06222222222222222, 0.06, 0.057777777777777775, 0.057777777777777775, 0.05555555555555555, 0.057777777777777775, 0.057777777777777775, 0.05555555555555555, 0.05555555555555555, 0.057777777777777775, 0.07555555555555556, 0.10222222222222223, 0.14222222222222222, 0.32666666666666666, 0.45555555555555555, 0.72, 0.8488888888888889, 0.9111111111111111, 0.7888888888888889, 0.6311111111111111, 0.07111111111111111, 0.07333333333333333, 0.06, 0.044444444444444446, 0.044444444444444446, 0.04, 0.16444444444444445, 0.08888888888888889, 0.8488888888888889, 0.09111111111111111, 0.1, 0.07111111111111111, 0.09111111111111111, 0.12, 0.13777777777777778, 0.10222222222222223, 0.04888888888888889, 0.6711111111111111, 0.028888888888888888, 0.022222222222222223, 0.022222222222222223, 0.4022222222222222, 0.6822222222222222, 0.3466666666666667, 0.8533333333333334, 0.9488888888888889, 0.5488888888888889, 0.1111111111111111, 0.044444444444444446, 0.04, 0.04, 0.04, 0.04, 0.9111111111111111, 0.042222222222222223, 0.04666666666666667, 0.044444444444444446, 0.044444444444444446, 0.05333333333333334, 0.044444444444444446, 0.9488888888888889, 0.042222222222222223, 0.042222222222222223, 0.042222222222222223, 0.04, 0.04, 0.042222222222222223, 0.042222222222222223, 0.042222222222222223, 0.05333333333333334, 0.042222222222222223, 0.08888888888888889, 0.07333333333333333, 0.8555555555555555, 0.1511111111111111, 0.07111111111111111, 0.04666666666666667, 0.04888888888888889, 0.051111111111111114, 0.057777777777777775, 0.057777777777777775, 0.08, 0.09555555555555556, 0.10888888888888888, 0.12, 0.14222222222222222, 0.15333333333333332, 0.16666666666666666, 0.18444444444444444, 0.19333333333333333, 0.20222222222222222, 0.21555555555555556, 0.24666666666666667, 0.5844444444444444], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RelB.gap.json b/pfam_gap_rates/RelB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5afc52c6ef167b3deecac50ef9f2cd99d0e9d80d
--- /dev/null
+++ b/pfam_gap_rates/RelB.gap.json
@@ -0,0 +1 @@
+{"family": "RelB", "n_seqs": 892, "length": 82, "gap_rates": [0.7623318385650224, 0.48318385650224216, 0.19506726457399104, 0.11434977578475336, 0.07062780269058296, 0.0515695067264574, 0.04708520179372197, 0.03811659192825112, 0.0257847533632287, 0.023542600896860985, 0.021300448430493273, 0.021300448430493273, 0.017937219730941704, 0.017937219730941704, 0.016816143497757848, 0.016816143497757848, 0.01569506726457399, 0.01569506726457399, 0.01569506726457399, 0.01569506726457399, 0.01233183856502242, 0.01233183856502242, 0.007847533632286996, 0.007847533632286996, 0.006726457399103139, 0.005605381165919282, 0.004484304932735426, 0.0033632286995515697, 0.0033632286995515697, 0.0033632286995515697, 0.0033632286995515697, 0.0033632286995515697, 0.0011210762331838565, 0.0011210762331838565, 0.0011210762331838565, 0.002242152466367713, 0.004484304932735426, 0.005605381165919282, 0.004484304932735426, 0.004484304932735426, 0.006726457399103139, 0.008968609865470852, 0.02466367713004484, 0.028026905829596414, 0.033632286995515695, 0.034753363228699555, 0.04035874439461883, 0.0515695067264574, 0.06950672645739911, 0.10201793721973094, 0.15807174887892378, 0.49327354260089684, 0.4248878923766816, 0.2365470852017937, 0.24327354260089687, 0.25, 0.27242152466367714, 0.28139013452914796, 0.28699551569506726, 0.2948430493273543, 0.3094170403587444, 0.32286995515695066, 0.3329596412556054, 0.3508968609865471, 0.36210762331838564, 0.39461883408071746, 0.42376681614349776, 0.4641255605381166, 0.5100896860986547, 0.649103139013453, 0.9372197309417041, 0.7376681614349776, 0.765695067264574, 0.7825112107623319, 0.7982062780269058, 0.8127802690582959, 0.8531390134529148, 0.8778026905829597, 0.8934977578475336, 0.9125560538116592, 0.9260089686098655, 0.9484304932735426], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Relaxase.gap.json b/pfam_gap_rates/Relaxase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98583ccbc03d221997d98c5396a46fd28fd31c05
--- /dev/null
+++ b/pfam_gap_rates/Relaxase.gap.json
@@ -0,0 +1 @@
+{"family": "Relaxase", "n_seqs": 1035, "length": 312, "gap_rates": [0.8164251207729468, 0.7265700483091787, 0.6579710144927536, 0.5739130434782609, 0.5352657004830917, 0.5140096618357488, 0.49468599033816424, 0.47342995169082125, 0.4647342995169082, 0.4618357487922705, 0.4608695652173913, 0.4599033816425121, 0.4570048309178744, 0.5111111111111111, 0.702415458937198, 0.6676328502415458, 0.9082125603864735, 0.9285024154589372, 0.9391304347826087, 0.9478260869565217, 0.9410628019323671, 0.9304347826086956, 0.9207729468599034, 0.8898550724637682, 0.6444444444444445, 0.5362318840579711, 0.5033816425120773, 0.485024154589372, 0.6289855072463768, 0.5082125603864734, 0.4966183574879227, 0.4608695652173913, 0.43285024154589374, 0.41352657004830917, 0.3884057971014493, 0.36618357487922704, 0.3710144927536232, 0.3516908212560386, 0.6463768115942029, 0.9314009661835749, 0.3710144927536232, 0.3314009661835749, 0.26763285024154587, 0.2541062801932367, 0.25120772946859904, 0.24541062801932367, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RepB.gap.json b/pfam_gap_rates/RepB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55c311d94ce90a471ba246b3714db0c50e8690ed
--- /dev/null
+++ b/pfam_gap_rates/RepB.gap.json
@@ -0,0 +1 @@
+{"family": "RepB", "n_seqs": 183, "length": 205, "gap_rates": [0.546448087431694, 0.12568306010928962, 0.07103825136612021, 0.0546448087431694, 0.04918032786885246, 0.04371584699453552, 0.04371584699453552, 0.03825136612021858, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.0273224043715847, 0.03278688524590164, 0.04918032786885246, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.23497267759562843, 0.23497267759562843, 0.23497267759562843, 0.5081967213114754, 0.5081967213114754, 0.5300546448087432, 0.5191256830601093, 0.03278688524590164, 0.03278688524590164, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.5519125683060109, 0.5027322404371585, 0.5027322404371585, 0.5027322404371585, 0.5081967213114754, 0.5683060109289617, 0.5628415300546448, 0.5573770491803278, 0.5573770491803278, 0.5573770491803278, 0.546448087431694, 0.546448087431694, 0.546448087431694, 0.5409836065573771, 0.02185792349726776, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01639344262295082, 0.4972677595628415, 0.5081967213114754, 0.6284153005464481, 0.9016393442622951, 0.9289617486338798, 0.9398907103825137, 0.9234972677595629, 0.6775956284153005, 0.5519125683060109, 0.5027322404371585, 0.4972677595628415, 0.2185792349726776, 0.24043715846994534, 0.2185792349726776, 0.9453551912568307, 0.21311475409836064, 0.20218579234972678, 0.19672131147540983, 0.03825136612021858, 0.0273224043715847, 0.03278688524590164, 0.9289617486338798, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.03278688524590164, 0.0273224043715847, 0.0273224043715847, 0.02185792349726776, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.06557377049180328, 0.06557377049180328, 0.7868852459016393, 0.6502732240437158, 0.3333333333333333, 0.28415300546448086, 0.18032786885245902, 0.12568306010928962, 0.09836065573770492, 0.07103825136612021, 0.07103825136612021, 0.08196721311475409, 0.06557377049180328, 0.09836065573770492, 0.20765027322404372, 0.18579234972677597, 0.16393442622950818, 0.15300546448087432, 0.14754098360655737, 0.12021857923497267, 0.12568306010928962, 0.12021857923497267, 0.13114754098360656, 0.9398907103825137, 0.13114754098360656, 0.14207650273224043, 0.14207650273224043, 0.14754098360655737, 0.2185792349726776, 0.8688524590163934, 0.1912568306010929, 0.19672131147540983, 0.19672131147540983, 0.17486338797814208, 0.17486338797814208, 0.15846994535519127, 0.14754098360655737, 0.14754098360655737, 0.16939890710382513, 0.15846994535519127, 0.15300546448087432, 0.6229508196721312, 0.15300546448087432, 0.15300546448087432, 0.15300546448087432, 0.15300546448087432, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.14754098360655737, 0.15300546448087432, 0.18032786885245902, 0.1912568306010929, 0.5737704918032787, 0.5737704918032787, 0.5737704918032787, 0.5792349726775956, 0.5792349726775956, 0.5519125683060109, 0.546448087431694, 0.5245901639344263, 0.23497267759562843, 0.22950819672131148, 0.24043715846994534, 0.24043715846994534, 0.24043715846994534, 0.24043715846994534, 0.25136612021857924, 0.2568306010928962, 0.273224043715847, 0.4262295081967213, 0.4098360655737705, 0.3770491803278688, 0.3879781420765027, 0.4371584699453552, 0.4808743169398907, 0.5355191256830601, 0.6174863387978142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Requiem_N.gap.json b/pfam_gap_rates/Requiem_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a31ad53a345e3ca07741f49dd6398a57bd807b85
--- /dev/null
+++ b/pfam_gap_rates/Requiem_N.gap.json
@@ -0,0 +1 @@
+{"family": "Requiem_N", "n_seqs": 121, "length": 73, "gap_rates": [0.8181818181818182, 0.14049586776859505, 0.11570247933884298, 0.049586776859504134, 0.049586776859504134, 0.04132231404958678, 0.04132231404958678, 0.03305785123966942, 0.03305785123966942, 0.03305785123966942, 0.03305785123966942, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.024793388429752067, 0.8099173553719008, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.008264462809917356, 0.008264462809917356, 0.01652892561983471, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.03305785123966942, 0.03305785123966942, 0.03305785123966942, 0.04132231404958678, 0.049586776859504134, 0.06611570247933884, 0.05785123966942149, 0.05785123966942149, 0.05785123966942149, 0.06611570247933884, 0.06611570247933884, 0.0743801652892562, 0.08264462809917356, 0.08264462809917356, 0.08264462809917356, 0.08264462809917356, 0.08264462809917356, 0.08264462809917356, 0.12396694214876033, 0.1322314049586777, 0.1487603305785124, 0.3305785123966942], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RhoGAP.gap.json b/pfam_gap_rates/RhoGAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..efca6a0c0a5bca96e5ee9fb7f72c495094a02cfd
--- /dev/null
+++ b/pfam_gap_rates/RhoGAP.gap.json
@@ -0,0 +1 @@
+{"family": "RhoGAP", "n_seqs": 5000, "length": 180, "gap_rates": [0.2852, 0.2728, 0.217, 0.1866, 0.181, 0.1744, 0.1678, 0.1662, 0.1614, 0.155, 0.1502, 0.1484, 0.1456, 0.9176, 0.1354, 0.14, 0.9278, 0.1506, 0.124, 0.1162, 0.1132, 0.1104, 0.1092, 0.1084, 0.1076, 0.1072, 0.1062, 0.1068, 0.1054, 0.1028, 0.0986, 0.094, 0.0894, 0.0876, 0.0884, 0.0826, 0.0818, 0.0814, 0.0834, 0.082, 0.0828, 0.0804, 0.0804, 0.0814, 0.0826, 0.091, 0.2868, 0.4766, 0.7, 0.8786, 0.9368, 0.9492, 0.9216, 0.834, 0.5716, 0.1558, 0.1198, 0.0708, 0.0634, 0.0602, 0.0586, 0.0572, 0.056, 0.055, 0.0526, 0.0524, 0.052, 0.051, 0.0508, 0.0504, 0.0502, 0.05, 0.0486, 0.0486, 0.0492, 0.0502, 0.0502, 0.0496, 0.0482, 0.0486, 0.0484, 0.0476, 0.0488, 0.0534, 0.0508, 0.0488, 0.049, 0.0492, 0.0486, 0.0496, 0.1216, 0.9188, 0.1348, 0.2204, 0.2, 0.188, 0.8852, 0.923, 0.9426, 0.903, 0.873, 0.1744, 0.1596, 0.1386, 0.1206, 0.0952, 0.0754, 0.9078, 0.9234, 0.9338, 0.9408, 0.9458, 0.9494, 0.9442, 0.9386, 0.9302, 0.917, 0.9042, 0.0816, 0.0744, 0.07, 0.0656, 0.06, 0.0598, 0.0564, 0.057, 0.0574, 0.9362, 0.0572, 0.0578, 0.0574, 0.056, 0.0558, 0.0562, 0.0564, 0.0558, 0.057, 0.0568, 0.057, 0.0582, 0.0586, 0.0582, 0.0586, 0.0588, 0.0588, 0.059, 0.0606, 0.0636, 0.0664, 0.0696, 0.0738, 0.0766, 0.0768, 0.1266, 0.9234, 0.9482, 0.9432, 0.9228, 0.0878, 0.0868, 0.0894, 0.0884, 0.0892, 0.091, 0.0912, 0.0922, 0.093, 0.094, 0.0962, 0.0972, 0.098, 0.1, 0.1014, 0.103, 0.1234, 0.1646, 0.226, 0.3436, 0.4758, 0.7044], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RhoGEF.gap.json b/pfam_gap_rates/RhoGEF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5100fff3d6ea064e29a1a221772e5ba3755d5f26
--- /dev/null
+++ b/pfam_gap_rates/RhoGEF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L11.gap.json b/pfam_gap_rates/Ribosomal_L11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..326447a7b99bf9533994582596ae35f91b4bd94d
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L11.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L11", "n_seqs": 3018, "length": 75, "gap_rates": [0.22332670642809807, 0.061630218687872766, 0.021537442014579192, 0.01756129887342611, 0.016235917826375082, 0.014247846255798542, 0.013253810470510271, 0.012259774685222002, 0.012259774685222002, 0.012259774685222002, 0.012259774685222002, 0.011928429423459244, 0.011928429423459244, 0.018223989396951624, 0.021537442014579192, 0.01954937044400265, 0.8386348575215374, 0.8442677269715043, 0.8399602385685885, 0.8379721669980119, 0.019218025182239893, 0.027501656726308814, 0.025513585155732273, 0.02186878727634195, 0.019880715705765408, 0.027833001988071572, 0.00828363154406892, 0.00728959575878065, 0.006295559973492379, 0.14844267726971505, 0.1447978793903247, 0.003976143141153081, 0.003976143141153081, 0.003976143141153081, 0.003976143141153081, 0.003976143141153081, 0.004307488402915839, 0.004307488402915839, 0.003976143141153081, 0.004307488402915839, 0.004307488402915839, 0.004307488402915839, 0.003976143141153081, 0.003976143141153081, 0.004307488402915839, 0.003976143141153081, 0.002982107355864811, 0.0023194168323392977, 0.14314115308151093, 0.003644797879390325, 0.003976143141153081, 0.7564612326043738, 0.004970178926441352, 0.002982107355864811, 0.9022531477799868, 0.0023194168323392977, 0.0023194168323392977, 0.0026507620941020544, 0.002982107355864811, 0.002982107355864811, 0.0033134526176275677, 0.0033134526176275677, 0.003976143141153081, 0.004307488402915839, 0.004638833664678595, 0.0066269052352551355, 0.00728959575878065, 0.007952286282306162, 0.00927766732935719, 0.00927766732935719, 0.01027170311464546, 0.011928429423459244, 0.011928429423459244, 0.02385685884691849, 0.04903909874088801], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L12.gap.json b/pfam_gap_rates/Ribosomal_L12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70b0cdb4ae5a080af22babfd4eef0ab12078345b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L12.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L12", "n_seqs": 2736, "length": 69, "gap_rates": [0.09502923976608187, 0.041301169590643276, 0.03618421052631579, 0.03508771929824561, 0.03252923976608187, 0.03252923976608187, 0.03216374269005848, 0.029239766081871343, 0.0266812865497076, 0.015716374269005847, 0.010964912280701754, 0.778874269005848, 0.008771929824561403, 0.00804093567251462, 0.006944444444444444, 0.006944444444444444, 0.0043859649122807015, 0.0043859649122807015, 0.003654970760233918, 0.0025584795321637425, 0.0025584795321637425, 0.0025584795321637425, 0.0025584795321637425, 0.003289473684210526, 0.8845029239766082, 0.0029239766081871343, 0.003289473684210526, 0.003289473684210526, 0.0029239766081871343, 0.0025584795321637425, 0.0029239766081871343, 0.0021929824561403508, 0.0021929824561403508, 0.0025584795321637425, 0.0025584795321637425, 0.0025584795321637425, 0.0021929824561403508, 0.003289473684210526, 0.009868421052631578, 0.021198830409356724, 0.04532163742690058, 0.024853801169590642, 0.024853801169590642, 0.02631578947368421, 0.027046783625730993, 0.027412280701754384, 0.02631578947368421, 0.0266812865497076, 0.027777777777777776, 0.027412280701754384, 0.028143274853801168, 0.028143274853801168, 0.02887426900584795, 0.029605263157894735, 0.029605263157894735, 0.029605263157894735, 0.029239766081871343, 0.029970760233918127, 0.03033625730994152, 0.03070175438596491, 0.031432748538011694, 0.03326023391812866, 0.035818713450292396, 0.03508771929824561, 0.03618421052631579, 0.04678362573099415, 0.05445906432748538, 0.07785087719298246, 0.25511695906432746], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L20.gap.json b/pfam_gap_rates/Ribosomal_L20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91a148dea7edf509fa1b60682e2a304ac48c3818
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L20.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L20", "n_seqs": 2367, "length": 107, "gap_rates": [0.1187156738487537, 0.11153358681875793, 0.10857625686523024, 0.09505703422053231, 0.09083227714406422, 0.08449514152936206, 0.07477820025348543, 0.06759611322348964, 0.062103929024081114, 0.05999155048584706, 0.05534431770173215, 0.035487959442332066, 0.03506548373468526, 0.032953105196451206, 0.029573299535276723, 0.02577101816645543, 0.02577101816645543, 0.022813688212927757, 0.021968736797634135, 0.021546261089987327, 0.021546261089987327, 0.020278833967046894, 0.019856358259400086, 0.019856358259400086, 0.019011406844106463, 0.020278833967046894, 0.019433882551753275, 0.016476552598225603, 0.016476552598225603, 0.015209125475285171, 0.015209125475285171, 0.014786649767638362, 0.01394169835234474, 0.01309674693705112, 0.012674271229404309, 0.012674271229404309, 0.01309674693705112, 0.010984368398817067, 0.009716941275876637, 0.009294465568229826, 0.009294465568229826, 0.009294465568229826, 0.009294465568229826, 0.008449514152936205, 0.008449514152936205, 0.0076045627376425855, 0.006759611322348965, 0.006759611322348965, 0.006759611322348965, 0.006759611322348965, 0.006759611322348965, 0.006759611322348965, 0.007182087029995775, 0.007182087029995775, 0.0063371356147021544, 0.0063371356147021544, 0.005492184199408534, 0.005069708491761723, 0.004647232784114913, 0.005069708491761723, 0.004647232784114913, 0.004224757076468103, 0.004224757076468103, 0.004224757076468103, 0.004224757076468103, 0.004647232784114913, 0.005069708491761723, 0.005492184199408534, 0.005492184199408534, 0.005492184199408534, 0.004224757076468103, 0.004224757076468103, 0.005492184199408534, 0.005492184199408534, 0.005914659907055344, 0.005914659907055344, 0.005914659907055344, 0.005492184199408534, 0.005492184199408534, 0.004647232784114913, 0.005069708491761723, 0.005492184199408534, 0.005492184199408534, 0.0063371356147021544, 0.0076045627376425855, 0.008871989860583017, 0.009294465568229826, 0.008871989860583017, 0.008871989860583017, 0.008871989860583017, 0.009716941275876637, 0.010139416983523447, 0.010561892691170258, 0.010984368398817067, 0.011406844106463879, 0.011406844106463879, 0.0122517955217575, 0.012674271229404309, 0.012674271229404309, 0.01351922264469793, 0.01394169835234474, 0.01563160118293198, 0.016476552598225603, 0.017743979721166033, 0.022391212505280946, 0.050697084917617236, 0.27798901563160117], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L22.gap.json b/pfam_gap_rates/Ribosomal_L22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bcb92e6197806dd2993d9fe662256d8175f2117
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L22.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L22", "n_seqs": 3169, "length": 139, "gap_rates": [0.2710634269485642, 0.11612496055538024, 0.06500473335437046, 0.05112022720100978, 0.037551278005680026, 0.03376459450930893, 0.03313348059324708, 0.03187125276112338, 0.02966235405490691, 0.028400126222783213, 0.028400126222783213, 0.027769012306721363, 0.02682234143262859, 0.02492899968444304, 0.023666771852319343, 0.022404544020195646, 0.022404544020195646, 0.021773430104133795, 0.020511202272010098, 0.016093404859577155, 0.015777847901546228, 0.016093404859577155, 0.015777847901546228, 0.01514673398548438, 0.014831177027453455, 0.014831177027453455, 0.01514673398548438, 0.01514673398548438, 0.014200063111391607, 0.014200063111391607, 0.013884506153360681, 0.013568949195329758, 0.012622278321236984, 0.8567371410539603, 0.010728936573051436, 0.836857052698012, 0.8371726096560429, 0.8374881666140739, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8384348374881666, 0.8384348374881666, 0.8428526349005996, 0.8472704323130325, 0.9488797727989903, 0.8564215840959293, 0.8447459766487851, 0.840643736194383, 0.8384348374881666, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8378037235721048, 0.8371726096560429, 0.8371726096560429, 0.836857052698012, 0.010097822656989587, 0.011360050489113285, 0.01041337961502051, 0.01041337961502051, 0.011360050489113285, 0.011360050489113285, 0.01167560744714421, 0.01167560744714421, 0.009151151782896813, 0.01041337961502051, 0.009466708740927737, 0.009782265698958662, 0.010097822656989587, 0.009151151782896813, 0.008835594824865888, 0.008520037866834964, 0.008520037866834964, 0.8583149258441148, 0.8311770274534553, 0.01167560744714421, 0.027769012306721363, 0.036289050173556325, 0.26601451562006945, 0.11454717576522562, 0.903755127800568, 0.9248974439886399, 0.8845061533606816, 0.10792047964657621, 0.0192489744398864, 0.03218680971915431, 0.013568949195329758, 0.011991164405175133, 0.011991164405175133, 0.011991164405175133, 0.011991164405175133, 0.012306721363206059, 0.012306721363206059, 0.012306721363206059, 0.011991164405175133, 0.012622278321236984, 0.012622278321236984, 0.012622278321236984, 0.012937835279267907, 0.018933417481855473, 0.018302303565793626, 0.014200063111391607, 0.014200063111391607, 0.014831177027453455, 0.01451562006942253, 0.01451562006942253, 0.01514673398548438, 0.014831177027453455, 0.014831177027453455, 0.015462290943515304, 0.015462290943515304, 0.015462290943515304, 0.015462290943515304, 0.016408961817608078, 0.016408961817608078, 0.017355632691700852, 0.01861786052382455, 0.019880088355948247, 0.021142316188071948, 0.022088987062164722, 0.022404544020195646, 0.024613442726412117, 0.02492899968444304, 0.025875670558535815, 0.02619122751656674, 0.036289050173556325, 0.06121804985799937, 0.6822341432628589], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L30_N.gap.json b/pfam_gap_rates/Ribosomal_L30_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e6f2a8e15404409bab7c7ba42e32879ed3208b0
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L30_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L30_N", "n_seqs": 513, "length": 72, "gap_rates": [0.2651072124756335, 0.1111111111111111, 0.08576998050682261, 0.08382066276803118, 0.08382066276803118, 0.07407407407407407, 0.07017543859649122, 0.0682261208576998, 0.0682261208576998, 0.0682261208576998, 0.0682261208576998, 0.06627680311890838, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06042884990253411, 0.06237816764132553, 0.04678362573099415, 0.04678362573099415, 0.04483430799220273, 0.04483430799220273, 0.042884990253411304, 0.042884990253411304, 0.04678362573099415, 0.04093567251461988, 0.03898635477582846, 0.037037037037037035, 0.031189083820662766, 0.015594541910331383, 0.015594541910331383, 0.011695906432748537, 0.009746588693957114, 0.003898635477582846, 0.005847953216374269, 0.003898635477582846, 0.003898635477582846, 0.001949317738791423, 0.001949317738791423, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.005847953216374269, 0.005847953216374269, 0.007797270955165692, 0.007797270955165692, 0.009746588693957114, 0.009746588693957114, 0.009746588693957114, 0.009746588693957114, 0.01364522417153996, 0.015594541910331383, 0.015594541910331383, 0.015594541910331383, 0.01949317738791423, 0.021442495126705652, 0.037037037037037035, 0.050682261208576995, 0.06042884990253411, 0.06627680311890838, 0.07017543859649122, 0.07407407407407407, 0.08187134502923976, 0.10136452241715399, 0.23196881091617932], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L34.gap.json b/pfam_gap_rates/Ribosomal_L34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7b79f22fe9b670612b6f078938f2b0af07f7cfd
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L34.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L34", "n_seqs": 1851, "length": 44, "gap_rates": [0.33927606699081575, 0.0902215018908698, 0.05942733657482442, 0.05186385737439222, 0.04916261480280929, 0.041058887088060506, 0.036196650459211235, 0.022690437601296597, 0.009724473257698542, 0.009724473257698542, 0.0032414910858995136, 0.0021609940572663426, 0.0021609940572663426, 0.0016207455429497568, 0.0016207455429497568, 0.0016207455429497568, 0.0016207455429497568, 0.0016207455429497568, 0.0016207455429497568, 0.0016207455429497568, 0.0016207455429497568, 0.002701242571582928, 0.002701242571582928, 0.0021609940572663426, 0.011885467314964884, 0.01242571582928147, 0.010804970286331712, 0.011885467314964884, 0.0016207455429497568, 0.0016207455429497568, 0.0016207455429497568, 0.0021609940572663426, 0.0021609940572663426, 0.0021609940572663426, 0.0021609940572663426, 0.002701242571582928, 0.002701242571582928, 0.004321988114532685, 0.004862236628849271, 0.005942733657482442, 0.00864397622906537, 0.009184224743381956, 0.032955159373311727, 0.1685575364667747], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L5.gap.json b/pfam_gap_rates/Ribosomal_L5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..854bccb0cacbb4caadef1ec4cb9beacaa8581056
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L5.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L5", "n_seqs": 2873, "length": 57, "gap_rates": [0.20884093282283328, 0.08214410024364775, 0.04629307344239471, 0.018795683954054995, 0.01148625130525583, 0.00870170553428472, 0.006961364427427776, 0.004872955099199443, 0.004524886877828055, 0.004176818656456666, 0.004176818656456666, 0.004176818656456666, 0.004176818656456666, 0.005221023320570832, 0.003480682213713888, 0.003132613992342499, 0.0027845457709711106, 0.003132613992342499, 0.012878524190741385, 0.0038287504350852765, 0.003480682213713888, 0.005569091541942221, 0.0038287504350852765, 0.18726070309780718, 0.17890706578489385, 0.17821092934215108, 0.0027845457709711106, 0.0027845457709711106, 0.003132613992342499, 0.003132613992342499, 0.002088409328228333, 0.0024364775495997215, 0.0024364775495997215, 0.0027845457709711106, 0.003132613992342499, 0.0027845457709711106, 0.003480682213713888, 0.003480682213713888, 0.003132613992342499, 0.0038287504350852765, 0.004176818656456666, 0.004176818656456666, 0.004872955099199443, 0.004872955099199443, 0.004872955099199443, 0.005221023320570832, 0.006265227984684998, 0.006265227984684998, 0.006265227984684998, 0.006613296206056387, 0.007309432648799165, 0.007309432648799165, 0.008005569091541943, 0.008353637312913331, 0.00904977375565611, 0.010093978419770276, 0.024712843717368604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L9_C.gap.json b/pfam_gap_rates/Ribosomal_L9_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4b8388967f34963f765e253155202be62b21a90
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L9_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L9_C", "n_seqs": 2149, "length": 89, "gap_rates": [0.6337831549557934, 0.17403443462075385, 0.09632387156817124, 0.05956258724988367, 0.04792926942764077, 0.035830618892508145, 0.0288506281991624, 0.018613308515588647, 0.0172173103769195, 0.0144253140995812, 0.013029315960912053, 0.714751046998604, 0.8841321544904607, 0.10888785481619358, 0.0637505816658911, 0.045137273150302464, 0.010702652396463471, 0.006979990693345742, 0.006514657980456026, 0.006514657980456026, 0.006514657980456026, 0.006514657980456026, 0.01675197766402978, 0.00604932526756631, 0.008841321544904607, 0.006979990693345742, 0.009306654257794323, 0.005118659841786877, 0.004187994416007445, 0.004187994416007445, 0.004653327128897162, 0.002791996277338297, 0.002326663564448581, 0.0018613308515588647, 0.0018613308515588647, 0.0018613308515588647, 0.0018613308515588647, 0.0018613308515588647, 0.002326663564448581, 0.002326663564448581, 0.002326663564448581, 0.002326663564448581, 0.002791996277338297, 0.002791996277338297, 0.002791996277338297, 0.5132619823173569, 0.011167985109353188, 0.006514657980456026, 0.007445323406235459, 0.006979990693345742, 0.006514657980456026, 0.002791996277338297, 0.002791996277338297, 0.002326663564448581, 0.003257328990228013, 0.003257328990228013, 0.0037226617031177293, 0.04839460214053048, 0.021405304792926943, 0.9120521172638436, 0.06840390879478828, 0.8841321544904607, 0.0037226617031177293, 0.0037226617031177293, 0.0037226617031177293, 0.0037226617031177293, 0.0037226617031177293, 0.0037226617031177293, 0.0037226617031177293, 0.0037226617031177293, 0.004187994416007445, 0.004187994416007445, 0.0037226617031177293, 0.005118659841786877, 0.007910656119125175, 0.011633317822242903, 0.016286644951140065, 0.020009306654257795, 0.031177291763610983, 0.030711959050721264, 0.03024662633783155, 0.03024662633783155, 0.030711959050721264, 0.03210795718939041, 0.03257328990228013, 0.035830618892508145, 0.04699860400186133, 0.1265704979060028, 0.7785016286644951], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S17.gap.json b/pfam_gap_rates/Ribosomal_S17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4fadf00a8c548cd0f6bf6a3bc605fac9d0b46744
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S17.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S17", "n_seqs": 3048, "length": 70, "gap_rates": [0.04461942257217848, 0.03608923884514436, 0.0318241469816273, 0.030183727034120734, 0.028871391076115485, 0.0265748031496063, 0.0291994750656168, 0.012467191601049869, 0.011811023622047244, 0.010826771653543307, 0.009514435695538058, 0.008202099737532808, 0.007874015748031496, 0.007874015748031496, 0.007545931758530184, 0.007545931758530184, 0.006889763779527559, 0.006889763779527559, 0.006889763779527559, 0.006889763779527559, 0.006889763779527559, 0.006889763779527559, 0.006561679790026247, 0.006889763779527559, 0.005905511811023622, 0.005249343832020997, 0.00426509186351706, 0.00426509186351706, 0.004593175853018373, 0.00426509186351706, 0.004593175853018373, 0.00426509186351706, 0.00426509186351706, 0.00426509186351706, 0.003937007874015748, 0.0032808398950131233, 0.0032808398950131233, 0.004593175853018373, 0.003937007874015748, 0.0032808398950131233, 0.0032808398950131233, 0.0036089238845144356, 0.03805774278215223, 0.9471784776902887, 0.8379265091863517, 0.003937007874015748, 0.003937007874015748, 0.00426509186351706, 0.00426509186351706, 0.00426509186351706, 0.004593175853018373, 0.004593175853018373, 0.004593175853018373, 0.005249343832020997, 0.00557742782152231, 0.006233595800524934, 0.010498687664041995, 0.010170603674540682, 0.01115485564304462, 0.01410761154855643, 0.014435695538057743, 0.014435695538057743, 0.015091863517060367, 0.015748031496062992, 0.015748031496062992, 0.019028871391076115, 0.02526246719160105, 0.0318241469816273, 0.1220472440944882, 0.4816272965879265], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S17_N.gap.json b/pfam_gap_rates/Ribosomal_S17_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ce3b99b9b25b25cf8a620e4b7617ae0403cba51
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S17_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S17_N", "n_seqs": 417, "length": 70, "gap_rates": [0.13189448441247004, 0.07194244604316546, 0.05755395683453238, 0.05275779376498801, 0.050359712230215826, 0.050359712230215826, 0.047961630695443645, 0.045563549160671464, 0.045563549160671464, 0.050359712230215826, 0.15827338129496402, 0.06474820143884892, 0.050359712230215826, 0.045563549160671464, 0.03836930455635491, 0.03597122302158273, 0.03597122302158273, 0.34772182254196643, 0.26618705035971224, 0.1342925659472422, 0.08393285371702638, 0.0671462829736211, 0.06474820143884892, 0.09592326139088729, 0.11990407673860912, 0.2182254196642686, 0.2829736211031175, 0.2422062350119904, 0.08393285371702638, 0.894484412470024, 0.016786570743405275, 0.016786570743405275, 0.016786570743405275, 0.016786570743405275, 0.014388489208633094, 0.014388489208633094, 0.016786570743405275, 0.019184652278177457, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.011990407673860911, 0.011990407673860911, 0.011990407673860911, 0.011990407673860911, 0.026378896882494004, 0.03117505995203837, 0.03117505995203837, 0.03836930455635491, 0.03836930455635491, 0.0407673860911271, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03836930455635491, 0.03836930455635491, 0.03836930455635491, 0.03836930455635491, 0.03836930455635491, 0.03597122302158273, 0.0407673860911271, 0.04316546762589928, 0.045563549160671464, 0.047961630695443645, 0.050359712230215826, 0.050359712230215826, 0.05515587529976019, 0.07194244604316546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S21.gap.json b/pfam_gap_rates/Ribosomal_S21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64c5a8c818a9cf54a6e69fbea2dbc23f78413a88
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S21.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S21", "n_seqs": 2045, "length": 55, "gap_rates": [0.643520782396088, 0.1902200488997555, 0.09486552567237164, 0.06748166259168704, 0.05330073349633252, 0.044987775061124696, 0.03863080684596577, 0.2410757946210269, 0.028361858190709046, 0.020048899755501223, 0.018092909535452322, 0.016625916870415647, 0.009290953545232274, 0.008801955990220049, 0.008312958435207823, 0.007823960880195598, 0.006356968215158924, 0.006356968215158924, 0.006356968215158924, 0.006845965770171149, 0.0053789731051344745, 0.003911980440097799, 0.0034229828850855745, 0.00293398533007335, 0.00293398533007335, 0.007823960880195598, 0.006845965770171149, 0.00293398533007335, 0.0034229828850855745, 0.0019559902200488996, 0.0019559902200488996, 0.001466992665036675, 0.0019559902200488996, 0.0009779951100244498, 0.0009779951100244498, 0.0034229828850855745, 0.0034229828850855745, 0.0034229828850855745, 0.004889975550122249, 0.0053789731051344745, 0.0053789731051344745, 0.0058679706601467, 0.0058679706601467, 0.006845965770171149, 0.006845965770171149, 0.007334963325183374, 0.009779951100244499, 0.010757946210268949, 0.01613691931540342, 0.02493887530562347, 0.03765281173594132, 0.05232273838630807, 0.10268948655256724, 0.1843520782396088, 0.5349633251833741], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S24e.gap.json b/pfam_gap_rates/Ribosomal_S24e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..490f3706f525ab5a40611bfe9036935402a65685
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S24e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S24e", "n_seqs": 533, "length": 79, "gap_rates": [0.35834896810506567, 0.11444652908067542, 0.0825515947467167, 0.06191369606003752, 0.05628517823639775, 0.054409005628517824, 0.04690431519699812, 0.0450281425891182, 0.09193245778611632, 0.03564727954971857, 0.03564727954971857, 0.03189493433395872, 0.0300187617260788, 0.028142589118198873, 0.020637898686679174, 0.020637898686679174, 0.020637898686679174, 0.01876172607879925, 0.016885553470919325, 0.016885553470919325, 0.016885553470919325, 0.016885553470919325, 0.016885553470919325, 0.009380863039399626, 0.009380863039399626, 0.005628517823639775, 0.005628517823639775, 0.7279549718574109, 0.0075046904315197, 0.009380863039399626, 0.005628517823639775, 0.005628517823639775, 0.005628517823639775, 0.00375234521575985, 0.00375234521575985, 0.00375234521575985, 0.00375234521575985, 0.00375234521575985, 0.00375234521575985, 0.00375234521575985, 0.0075046904315197, 0.009380863039399626, 0.01125703564727955, 0.013133208255159476, 0.0150093808630394, 0.013133208255159476, 0.01125703564727955, 0.013133208255159476, 0.016885553470919325, 0.016885553470919325, 0.016885553470919325, 0.01125703564727955, 0.01125703564727955, 0.009380863039399626, 0.009380863039399626, 0.009380863039399626, 0.009380863039399626, 0.013133208255159476, 0.013133208255159476, 0.016885553470919325, 0.013133208255159476, 0.03564727954971857, 0.016885553470919325, 0.0150093808630394, 0.0150093808630394, 0.020637898686679174, 0.020637898686679174, 0.02626641651031895, 0.0300187617260788, 0.03564727954971857, 0.03564727954971857, 0.04127579737335835, 0.04690431519699812, 0.05065666041275797, 0.06566604127579738, 0.09193245778611632, 0.12195121951219512, 0.17073170731707318, 0.3527204502814259], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribul_P_3_epim.gap.json b/pfam_gap_rates/Ribul_P_3_epim.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50cfe956de1600238c4206fe47fe406eb71c4852
--- /dev/null
+++ b/pfam_gap_rates/Ribul_P_3_epim.gap.json
@@ -0,0 +1 @@
+{"family": "Ribul_P_3_epim", "n_seqs": 2911, "length": 207, "gap_rates": [0.7492270697354861, 0.09618687736173136, 0.08175884575747167, 0.07557540364136035, 0.07351425626932326, 0.07110958433527997, 0.07042253521126761, 0.06870491240123669, 0.06904843696324287, 0.06939196152524905, 0.07007901064926142, 0.0683613878392305, 0.0663002404671934, 0.06458261765716249, 0.06389556853315012, 0.06252147028512539, 0.06286499484713157, 0.06183442116111302, 0.061147372037100654, 0.06080384747509447, 0.05977327378907592, 0.059429749227069735, 0.10202679491583648, 0.09412572998969426, 0.17966334592923394, 0.10477499141188595, 0.0518722088629337, 0.051185159738921335, 0.05084163517691515, 0.05084163517691515, 0.05015458605290278, 0.05015458605290278, 0.0498110614908966, 0.04397114393679148, 0.044314668498797664, 0.04500171762281003, 0.0436276193747853, 0.04328409481277912, 0.044314668498797664, 0.0436276193747853, 0.044314668498797664, 0.0436276193747853, 0.04465819306080385, 0.0456887667468224, 0.046375815870834766, 0.04671934043284095, 0.05049811061490896, 0.0518722088629337, 0.049467536928890415, 0.047406389556853314, 0.04534524218481621, 0.0456887667468224, 0.046032291308828584, 0.052559257986946065, 0.05668155273102027, 0.9189282033665407, 0.9470972174510478, 0.9484713156990725, 0.9398832016489179, 0.7743043627619375, 0.05049811061490896, 0.0621779457231192, 0.04912401236688423, 0.03881827550669873, 0.03881827550669873, 0.03881827550669873, 0.03813122638268636, 0.03813122638268636, 0.037444177258673994, 0.03332188251459979, 0.03297835795259361, 0.03297835795259361, 0.03332188251459979, 0.03366540707660598, 0.034352456200618345, 0.03503950532463071, 0.035726554448643075, 0.03538302988663689, 0.03675712813466163, 0.03641360357265545, 0.036070079010649264, 0.036070079010649264, 0.035726554448643075, 0.03641360357265545, 0.03675712813466163, 0.05049811061490896, 0.04019237375472346, 0.03503950532463071, 0.03469598076262453, 0.03503950532463071, 0.03469598076262453, 0.03503950532463071, 0.03503950532463071, 0.03710065269666781, 0.8862933699759533, 0.9378220542768808, 0.8625901751975267, 0.037787701820680177, 0.03881827550669873, 0.03847475094469255, 0.03881827550669873, 0.037787701820680177, 0.037444177258673994, 0.03675712813466163, 0.03538302988663689, 0.03675712813466163, 0.035726554448643075, 0.035726554448643075, 0.03675712813466163, 0.037444177258673994, 0.037787701820680177, 0.037787701820680177, 0.03881827550669873, 0.03675712813466163, 0.03503950532463071, 0.03229130882858124, 0.032634833390587425, 0.032634833390587425, 0.03160425970456888, 0.031260735142562696, 0.03160425970456888, 0.03194778426657506, 0.03160425970456888, 0.03160425970456888, 0.031260735142562696, 0.031260735142562696, 0.031260735142562696, 0.03091721058055651, 0.03160425970456888, 0.03160425970456888, 0.03194778426657506, 0.03297835795259361, 0.03194778426657506, 0.030573686018550327, 0.03091721058055651, 0.029199587770525594, 0.028512538646513225, 0.028512538646513225, 0.028512538646513225, 0.028512538646513225, 0.028856063208519408, 0.027481964960494674, 0.027481964960494674, 0.027481964960494674, 0.02679491583648231, 0.027138440398488492, 0.027481964960494674, 0.02782548952250086, 0.02782548952250086, 0.029543112332531776, 0.030573686018550327, 0.028856063208519408, 0.029199587770525594, 0.029199587770525594, 0.029199587770525594, 0.034352456200618345, 0.02988663689453796, 0.027481964960494674, 0.02679491583648231, 0.02610786671246994, 0.027138440398488492, 0.027481964960494674, 0.027138440398488492, 0.027138440398488492, 0.027481964960494674, 0.028169014084507043, 0.027138440398488492, 0.02782548952250086, 0.02988663689453796, 0.03538302988663689, 0.3218825145997939, 0.31638612160769497, 0.9257986946066644, 0.24424596358639641, 0.2301614565441429, 0.036070079010649264, 0.031260735142562696, 0.028512538646513225, 0.028512538646513225, 0.028512538646513225, 0.028512538646513225, 0.028512538646513225, 0.028512538646513225, 0.028512538646513225, 0.028512538646513225, 0.028856063208519408, 0.029199587770525594, 0.02988663689453796, 0.02988663689453796, 0.03023016145654414, 0.03194778426657506, 0.031260735142562696, 0.03160425970456888, 0.044314668498797664, 0.04019237375472346, 0.03538302988663689, 0.03538302988663689, 0.03538302988663689, 0.03641360357265545, 0.03675712813466163, 0.037444177258673994, 0.037787701820680177, 0.03916180006870491, 0.0436276193747853, 0.059429749227069735, 0.0872552387495706, 0.1679835108210237], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rick_17kDa_Anti.gap.json b/pfam_gap_rates/Rick_17kDa_Anti.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24c9add69624d410235591df1e8f1b9ef8b9d9b6
--- /dev/null
+++ b/pfam_gap_rates/Rick_17kDa_Anti.gap.json
@@ -0,0 +1 @@
+{"family": "Rick_17kDa_Anti", "n_seqs": 757, "length": 43, "gap_rates": [0.5151915455746368, 0.15191545574636725, 0.04095112285336856, 0.018494055482166448, 0.005284015852047556, 0.003963011889035667, 0.003963011889035667, 0.002642007926023778, 0.002642007926023778, 0.002642007926023778, 0.002642007926023778, 0.001321003963011889, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8837516512549538, 0.12945838837516513, 0.12945838837516513, 0.09907529722589167, 0.026420079260237782, 0.02509907529722589, 0.010568031704095112, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002642007926023778, 0.003963011889035667, 0.010568031704095112, 0.022457067371202115, 0.05680317040951123, 0.13210039630118892, 0.6618229854689565], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Romo1.gap.json b/pfam_gap_rates/Romo1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32ea8e86886580d125252c5a3851390332a83248
--- /dev/null
+++ b/pfam_gap_rates/Romo1.gap.json
@@ -0,0 +1 @@
+{"family": "Romo1", "n_seqs": 258, "length": 66, "gap_rates": [0.26744186046511625, 0.15503875968992248, 0.1434108527131783, 0.13953488372093023, 0.12403100775193798, 0.10465116279069768, 0.09302325581395349, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.05426356589147287, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.031007751937984496, 0.03875968992248062, 0.03875968992248062, 0.03488372093023256, 0.031007751937984496, 0.023255813953488372, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.027131782945736434, 0.015503875968992248, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.027131782945736434, 0.027131782945736434, 0.023255813953488372, 0.023255813953488372, 0.12403100775193798, 0.1124031007751938, 0.1124031007751938, 0.1124031007751938, 0.1124031007751938, 0.027131782945736434, 0.027131782945736434, 0.027131782945736434, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.050387596899224806, 0.05813953488372093, 0.06589147286821706, 0.07364341085271318, 0.07751937984496124, 0.07751937984496124, 0.08139534883720931, 0.08527131782945736, 0.10077519379844961, 0.10077519379844961, 0.18992248062015504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rootletin.gap.json b/pfam_gap_rates/Rootletin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73102ed88a7336166bcef12265ac4ec44c3230a9
--- /dev/null
+++ b/pfam_gap_rates/Rootletin.gap.json
@@ -0,0 +1 @@
+{"family": "Rootletin", "n_seqs": 144, "length": 244, "gap_rates": [0.4027777777777778, 0.2916666666666667, 0.2847222222222222, 0.2847222222222222, 0.2847222222222222, 0.2847222222222222, 0.2847222222222222, 0.2847222222222222, 0.2847222222222222, 0.2847222222222222, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.2708333333333333, 0.2777777777777778, 0.2708333333333333, 0.2708333333333333, 0.2638888888888889, 0.2638888888888889, 0.2569444444444444, 0.2361111111111111, 0.2361111111111111, 0.24305555555555555, 0.24305555555555555, 0.2361111111111111, 0.2152777777777778, 0.2152777777777778, 0.2152777777777778, 0.2152777777777778, 0.2152777777777778, 0.22916666666666666, 0.2152777777777778, 0.2152777777777778, 0.22916666666666666, 0.22916666666666666, 0.22916666666666666, 0.22916666666666666, 0.8402777777777778, 0.8472222222222222, 0.8888888888888888, 0.8888888888888888, 0.9097222222222222, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.8888888888888888, 0.8888888888888888, 0.8819444444444444, 0.8402777777777778, 0.8263888888888888, 0.3541666666666667, 0.4027777777777778, 0.4097222222222222, 0.4027777777777778, 0.4236111111111111, 0.4444444444444444, 0.4166666666666667, 0.3680555555555556, 0.3888888888888889, 0.4375, 0.6180555555555556, 0.5902777777777778, 0.7430555555555556, 0.8541666666666666, 0.9444444444444444, 0.8888888888888888, 0.8055555555555556, 0.6875, 0.5833333333333334, 0.7569444444444444, 0.4583333333333333, 0.625, 0.6388888888888888, 0.6736111111111112, 0.7430555555555556, 0.7777777777777778, 0.8055555555555556, 0.8333333333333334, 0.8819444444444444, 0.8888888888888888, 0.8958333333333334, 0.9027777777777778, 0.9097222222222222, 0.9236111111111112, 0.9305555555555556, 0.9305555555555556, 0.9444444444444444, 0.9305555555555556, 0.9305555555555556, 0.9305555555555556, 0.9166666666666666, 0.9027777777777778, 0.8958333333333334, 0.8958333333333334, 0.8888888888888888, 0.8541666666666666, 0.8263888888888888, 0.7847222222222222, 0.7708333333333334, 0.6944444444444444, 0.6666666666666666, 0.625, 0.625, 0.3194444444444444, 0.3194444444444444, 0.2361111111111111, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2152777777777778, 0.2152777777777778, 0.19444444444444445, 0.9375, 0.9444444444444444, 0.9444444444444444, 0.9375, 0.3958333333333333, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.1875, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.1875, 0.1875, 0.1875, 0.1736111111111111, 0.2013888888888889, 0.20833333333333334, 0.2152777777777778, 0.4097222222222222, 0.4097222222222222, 0.4027777777777778, 0.4027777777777778, 0.3888888888888889, 0.3819444444444444, 0.375, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.20833333333333334, 0.2013888888888889, 0.2013888888888889, 0.20833333333333334, 0.22916666666666666, 0.2222222222222222, 0.2222222222222222, 0.20833333333333334, 0.2152777777777778, 0.2222222222222222, 0.20833333333333334, 0.18055555555555555, 0.1736111111111111, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1736111111111111, 0.1736111111111111, 0.1736111111111111, 0.18055555555555555, 0.1875, 0.19444444444444445, 0.3680555555555556, 0.3541666666666667, 0.3541666666666667, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.1736111111111111, 0.1597222222222222, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1597222222222222, 0.1597222222222222, 0.16666666666666666, 0.18055555555555555, 0.1875, 0.1875, 0.18055555555555555, 0.19444444444444445, 0.19444444444444445, 0.1875, 0.1875, 0.1875, 0.18055555555555555, 0.18055555555555555, 0.1875, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.1597222222222222, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1736111111111111, 0.1736111111111111, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.20833333333333334, 0.2152777777777778, 0.24305555555555555, 0.3888888888888889, 0.8472222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rsm1.gap.json b/pfam_gap_rates/Rsm1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80278285ce2ea8179854f1bf435fb2aef1cf70f1
--- /dev/null
+++ b/pfam_gap_rates/Rsm1.gap.json
@@ -0,0 +1 @@
+{"family": "Rsm1", "n_seqs": 162, "length": 144, "gap_rates": [0.41358024691358025, 0.36419753086419754, 0.2345679012345679, 0.2037037037037037, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19135802469135801, 0.19135802469135801, 0.7469135802469136, 0.8333333333333334, 0.8765432098765432, 0.8950617283950617, 0.8950617283950617, 0.8950617283950617, 0.9074074074074074, 0.9259259259259259, 0.9259259259259259, 0.9382716049382716, 0.9444444444444444, 0.9444444444444444, 0.9382716049382716, 0.9259259259259259, 0.9197530864197531, 0.9012345679012346, 0.8950617283950617, 0.8950617283950617, 0.8827160493827161, 0.8641975308641975, 0.7962962962962963, 0.7407407407407407, 0.19135802469135801, 0.21604938271604937, 0.21604938271604937, 0.25308641975308643, 0.21604938271604937, 0.19135802469135801, 0.11728395061728394, 0.08024691358024691, 0.06790123456790123, 0.6975308641975309, 0.7592592592592593, 0.7283950617283951, 0.691358024691358, 0.06172839506172839, 0.05555555555555555, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.06790123456790123, 0.08641975308641975, 0.08641975308641975, 0.08024691358024691, 0.06790123456790123, 0.06790123456790123, 0.06790123456790123, 0.05555555555555555, 0.09876543209876543, 0.1111111111111111, 0.1111111111111111, 0.12345679012345678, 0.2962962962962963, 0.25308641975308643, 0.21604938271604937, 0.41975308641975306, 0.41975308641975306, 0.43209876543209874, 0.7283950617283951, 0.7777777777777778, 0.8024691358024691, 0.8209876543209876, 0.8395061728395061, 0.8580246913580247, 0.8950617283950617, 0.9259259259259259, 0.9382716049382716, 0.8950617283950617, 0.8827160493827161, 0.845679012345679, 0.8271604938271605, 0.8024691358024691, 0.7962962962962963, 0.7592592592592593, 0.5802469135802469, 0.41975308641975306, 0.41975308641975306, 0.41358024691358025, 0.22839506172839505, 0.2037037037037037, 0.1728395061728395, 0.14814814814814814, 0.12345679012345678, 0.11728395061728394, 0.11728395061728394, 0.11728395061728394, 0.11728395061728394, 0.11728395061728394, 0.11728395061728394, 0.12345679012345678, 0.11728395061728394, 0.11728395061728394, 0.11728395061728394, 0.12962962962962962, 0.12962962962962962, 0.1419753086419753, 0.14814814814814814, 0.16049382716049382, 0.1728395061728395, 0.25308641975308643, 0.3148148148148148, 0.345679012345679, 0.3765432098765432, 0.3950617283950617, 0.41975308641975306, 0.42592592592592593, 0.43209876543209874, 0.4506172839506173, 0.47530864197530864, 0.5123456790123457, 0.5185185185185185, 0.5493827160493827, 0.6172839506172839, 0.6172839506172839, 0.6604938271604939, 0.9012345679012346, 0.9074074074074074, 0.8765432098765432, 0.8024691358024691, 0.6234567901234568, 0.5740740740740741, 0.5740740740740741, 0.5740740740740741, 0.5802469135802469, 0.5864197530864198, 0.5864197530864198, 0.6111111111111112, 0.6172839506172839, 0.654320987654321, 0.8148148148148148], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RuvB_N.gap.json b/pfam_gap_rates/RuvB_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43c16f5a9ebf187614fb36db91cf7e08bd22e771
--- /dev/null
+++ b/pfam_gap_rates/RuvB_N.gap.json
@@ -0,0 +1 @@
+{"family": "RuvB_N", "n_seqs": 2948, "length": 233, "gap_rates": [0.8025780189959294, 0.7371099050203528, 0.6855495251017639, 0.6407734056987788, 0.5793758480325645, 0.5013568521031208, 0.4223202170963365, 0.35447761194029853, 0.3229308005427408, 0.2974898236092266, 0.24694708276797828, 0.2225237449118046, 0.1787652645861601, 0.12347354138398914, 0.04952510176390773, 0.03154681139755767, 0.026797829036635006, 0.025780189959294438, 0.025780189959294438, 0.024423337856173677, 0.023744911804613297, 0.023066485753052916, 0.023066485753052916, 0.023066485753052916, 0.023066485753052916, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022048846675712348, 0.022048846675712348, 0.021709633649932156, 0.021709633649932156, 0.022048846675712348, 0.02408412483039349, 0.024423337856173677, 0.03324287652645862, 0.03459972862957938, 0.03459972862957938, 0.03188602442333786, 0.0407055630936228, 0.06241519674355495, 0.0814111261872456, 0.14382632293080055, 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\ No newline at end of file
diff --git a/pfam_gap_rates/S-AdoMet_synt_N.gap.json b/pfam_gap_rates/S-AdoMet_synt_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bf4f5b48e5cf260643c79bbca936ce8275a738f
--- /dev/null
+++ b/pfam_gap_rates/S-AdoMet_synt_N.gap.json
@@ -0,0 +1 @@
+{"family": "S-AdoMet_synt_N", "n_seqs": 2682, "length": 102, "gap_rates": [0.8381804623415362, 0.18568232662192394, 0.06263982102908278, 0.04138702460850112, 0.035048471290082026, 0.03206562266964952, 0.023862788963460103, 0.023862788963460103, 0.023117076808351976, 0.021998508575689784, 0.02162565249813572, 0.020879940343027592, 0.020507084265473527, 0.0197613721103654, 0.017897091722595078, 0.01715137956748695, 0.014914243102162566, 0.014914243102162566, 0.0145413870246085, 0.014168530947054437, 0.014168530947054437, 0.014168530947054437, 0.015287099179716629, 0.014914243102162566, 0.0145413870246085, 0.014914243102162566, 0.014914243102162566, 0.014914243102162566, 0.015659955257270694, 0.01603281133482476, 0.01603281133482476, 0.01603281133482476, 0.015659955257270694, 0.015659955257270694, 0.015659955257270694, 0.015659955257270694, 0.014914243102162566, 0.0145413870246085, 0.013795674869500374, 0.013422818791946308, 0.013795674869500374, 0.0145413870246085, 0.014168530947054437, 0.014914243102162566, 0.0145413870246085, 0.0145413870246085, 0.0145413870246085, 0.011558538404175988, 0.010439970171513796, 0.008575689783743476, 0.008575689783743476, 0.008575689783743476, 0.008575689783743476, 0.008948545861297539, 0.009321401938851604, 0.009694258016405667, 0.030574198359433258, 0.03131991051454139, 0.03355704697986577, 0.03169276659209545, 0.010067114093959731, 0.9336316181953765, 0.9399701715137957, 0.9258016405667412, 0.008948545861297539, 0.009321401938851604, 0.009694258016405667, 0.008948545861297539, 0.009321401938851604, 0.010067114093959731, 0.01081282624906786, 0.011931394481730051, 0.014914243102162566, 0.015659955257270694, 0.01715137956748695, 0.018642803877703208, 0.020507084265473527, 0.02274422073079791, 0.023862788963460103, 0.024235645041014168, 0.02609992542878449, 0.14205816554809844, 0.1342281879194631, 0.058165548098434, 0.06077554064131245, 0.06524981357196122, 0.07084265473527218, 0.07419835943325877, 0.0738255033557047, 0.06674123788217748, 0.06748695003728561, 0.061894108873974646, 0.06301267710663684, 0.06413124533929904, 0.06562266964951528, 0.06674123788217748, 0.06748695003728561, 0.07084265473527218, 0.07307979120059657, 0.08128262490678598, 0.08612975391498881, 0.2889634601043997], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S4.gap.json b/pfam_gap_rates/S4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec7719ad5ebdb39a1de25c5d31724ced3f32f47b
--- /dev/null
+++ b/pfam_gap_rates/S4.gap.json
@@ -0,0 +1 @@
+{"family": "S4", "n_seqs": 5000, "length": 48, "gap_rates": [0.4932, 0.1476, 0.1044, 0.086, 0.0666, 0.0458, 0.0366, 0.0314, 0.0756, 0.0226, 0.0176, 0.0146, 0.0106, 0.0316, 0.2252, 0.002, 0.0008, 0.0006, 0.0004, 0.0004, 0.0002, 0.0, 0.0, 0.0, 0.0002, 0.0, 0.0004, 0.0002, 0.0006, 0.007, 0.008, 0.0086, 0.009, 0.0112, 0.0132, 0.018, 0.3118, 0.0348, 0.0416, 0.0544, 0.0632, 0.0772, 0.0982, 0.135, 0.216, 0.2864, 0.3522, 0.4548], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAM_2.gap.json b/pfam_gap_rates/SAM_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d178333a5f53141ac654c61e49b4dfcc36bf047f
--- /dev/null
+++ b/pfam_gap_rates/SAM_2.gap.json
@@ -0,0 +1 @@
+{"family": "SAM_2", "n_seqs": 2156, "length": 77, "gap_rates": [0.7847866419294991, 0.635899814471243, 0.4601113172541744, 0.3228200371057514, 0.288961038961039, 0.23191094619666047, 0.1679035250463822, 0.11131725417439703, 0.08441558441558442, 0.07699443413729128, 0.0663265306122449, 0.0575139146567718, 0.05194805194805195, 0.05148423005565863, 0.9225417439703154, 0.04638218923933209, 0.04220779220779221, 0.9341372912801484, 0.9174397031539888, 0.03942486085343228, 0.03525046382189239, 0.8613172541743971, 0.03153988868274583, 0.021335807050092765, 0.015306122448979591, 0.01437847866419295, 0.012059369202226345, 0.0074211502782931356, 0.006957328385899814, 0.006493506493506494, 0.0055658627087198514, 0.004174397031539889, 0.004174397031539889, 0.003246753246753247, 0.003246753246753247, 0.003246753246753247, 0.7087198515769945, 0.075139146567718, 0.07189239332096475, 0.008812615955473098, 0.8246753246753247, 0.9276437847866419, 0.8084415584415584, 0.01437847866419295, 0.013450834879406308, 0.013450834879406308, 0.013914656771799629, 0.018089053803339517, 0.026437847866419294, 0.029684601113172542, 0.030148423005565864, 0.8557513914656771, 0.9183673469387755, 0.8478664192949907, 0.03200371057513915, 0.7931354359925789, 0.03432282003710575, 0.03571428571428571, 0.040352504638218926, 0.041280148423005564, 0.07096474953617811, 0.04962894248608534, 0.05705009276437848, 0.05797773654916512, 0.05983302411873841, 0.09137291280148423, 0.07374768089053803, 0.08163265306122448, 0.08302411873840446, 0.09833024118738404, 0.10528756957328386, 0.13218923933209648, 0.15213358070500926, 0.20269016697588127, 0.2606679035250464, 0.3515769944341373, 0.7268089053803339], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SBF2.gap.json b/pfam_gap_rates/SBF2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..261d8b88403cc5b59df3f3bb8b5631bfc25f73f0
--- /dev/null
+++ b/pfam_gap_rates/SBF2.gap.json
@@ -0,0 +1 @@
+{"family": "SBF2", "n_seqs": 161, "length": 256, "gap_rates": [0.8136645962732919, 0.7080745341614907, 0.7018633540372671, 0.6894409937888198, 0.6894409937888198, 0.6645962732919255, 0.6583850931677019, 0.6459627329192547, 0.6273291925465838, 0.6149068322981367, 0.6211180124223602, 0.7204968944099379, 0.5962732919254659, 0.5900621118012422, 0.577639751552795, 0.6459627329192547, 0.5652173913043478, 0.5527950310559007, 0.546583850931677, 0.5403726708074534, 0.5403726708074534, 0.5403726708074534, 0.5279503105590062, 0.5279503105590062, 0.515527950310559, 0.5031055900621118, 0.5031055900621118, 0.5031055900621118, 0.5031055900621118, 0.4968944099378882, 0.4968944099378882, 0.4906832298136646, 0.4906832298136646, 0.4906832298136646, 0.4906832298136646, 0.4906832298136646, 0.4906832298136646, 0.4968944099378882, 0.4906832298136646, 0.5093167701863354, 0.4782608695652174, 0.4782608695652174, 0.4906832298136646, 0.4658385093167702, 0.4658385093167702, 0.42857142857142855, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SBP_bac_10.gap.json b/pfam_gap_rates/SBP_bac_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f46617269b62472b6c4e6f38f0db15d96b8ae85
--- /dev/null
+++ b/pfam_gap_rates/SBP_bac_10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SBP_bac_8.gap.json b/pfam_gap_rates/SBP_bac_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f46703cda70aef69f670b84a4ff28100a1b9840
--- /dev/null
+++ b/pfam_gap_rates/SBP_bac_8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SCAI.gap.json b/pfam_gap_rates/SCAI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..528f44423aaffc9d8d9a220ae6227a335e6cc442
--- /dev/null
+++ b/pfam_gap_rates/SCAI.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SCP2.gap.json b/pfam_gap_rates/SCP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cce0afe3e4c03910efe59c8d76b33b6e4f3ef09
--- /dev/null
+++ b/pfam_gap_rates/SCP2.gap.json
@@ -0,0 +1 @@
+{"family": "SCP2", "n_seqs": 1592, "length": 113, "gap_rates": [0.8555276381909548, 0.7487437185929648, 0.7041457286432161, 0.6589195979899497, 0.6212311557788944, 0.5785175879396985, 0.5659547738693468, 0.7273869346733668, 0.6878140703517588, 0.6105527638190955, 0.5081658291457286, 0.9422110552763819, 0.38253768844221103, 0.3360552763819096, 0.2814070351758794, 0.25314070351758794, 0.23680904522613067, 0.2236180904522613, 0.20603015075376885, 0.18404522613065327, 0.16080402010050251, 0.14761306532663315, 0.1306532663316583, 0.7154522613065326, 0.10175879396984924, 0.08103015075376885, 0.07726130653266332, 0.07474874371859297, 0.0728643216080402, 0.0678391959798995, 0.06469849246231156, 0.06281407035175879, 0.062185929648241205, 0.2537688442211055, 0.12374371859296482, 0.6557788944723618, 0.8951005025125628, 0.9440954773869347, 0.7116834170854272, 0.5326633165829145, 0.07035175879396985, 0.05025125628140704, 0.04396984924623116, 0.042085427135678394, 0.03957286432160804, 0.038944723618090454, 0.0364321608040201, 0.04020100502512563, 0.2129396984924623, 0.07663316582914573, 0.038944723618090454, 0.0364321608040201, 0.02763819095477387, 0.8260050251256281, 0.9277638190954773, 0.8743718592964824, 0.7211055276381909, 0.02512562814070352, 0.05339195979899498, 0.038316582914572864, 0.0986180904522613, 0.1092964824120603, 0.7751256281407035, 0.06407035175879397, 0.009422110552763818, 0.006909547738693468, 0.006909547738693468, 0.00628140703517588, 0.005653266331658292, 0.005025125628140704, 0.005653266331658292, 0.005025125628140704, 0.005025125628140704, 0.006909547738693468, 0.005653266331658292, 0.00628140703517588, 0.00628140703517588, 0.00628140703517588, 0.00628140703517588, 0.0037688442211055275, 0.0037688442211055275, 0.0037688442211055275, 0.0037688442211055275, 0.0037688442211055275, 0.12688442211055276, 0.0414572864321608, 0.03706030150753769, 0.02512562814070352, 0.018844221105527637, 0.013190954773869347, 0.01193467336683417, 0.01821608040201005, 0.017587939698492462, 0.014447236180904523, 0.01507537688442211, 0.01507537688442211, 0.016331658291457288, 0.01821608040201005, 0.020100502512562814, 0.034547738693467334, 0.038316582914572864, 0.042085427135678394, 0.04585427135678392, 0.05402010050251256, 0.059045226130653265, 0.06721105527638191, 0.07349246231155779, 0.08731155778894473, 0.12123115577889447, 0.17902010050251257, 0.21231155778894473, 0.30590452261306533, 0.7368090452261307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SH2_2.gap.json b/pfam_gap_rates/SH2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..223c426a4a4a4e7e256ec850e7771f73a11aba1f
--- /dev/null
+++ b/pfam_gap_rates/SH2_2.gap.json
@@ -0,0 +1 @@
+{"family": "SH2_2", "n_seqs": 352, "length": 232, "gap_rates": [0.6988636363636364, 0.3465909090909091, 0.3380681818181818, 0.32386363636363635, 0.3210227272727273, 0.3181818181818182, 0.3068181818181818, 0.30113636363636365, 0.29545454545454547, 0.29261363636363635, 0.5767045454545454, 0.3181818181818182, 0.2840909090909091, 0.2556818181818182, 0.5426136363636364, 0.35511363636363635, 0.22443181818181818, 0.19886363636363635, 0.20170454545454544, 0.2840909090909091, 0.3125, 0.17897727272727273, 0.1534090909090909, 0.13636363636363635, 0.125, 0.13352272727272727, 0.18181818181818182, 0.44886363636363635, 0.4119318181818182, 0.3721590909090909, 0.09943181818181818, 0.09090909090909091, 0.09090909090909091, 0.08806818181818182, 0.08522727272727272, 0.08238636363636363, 0.08238636363636363, 0.08238636363636363, 0.07954545454545454, 0.07954545454545454, 0.07670454545454546, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07102272727272728, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06534090909090909, 0.0625, 0.9488636363636364, 0.9403409090909091, 0.0625, 0.05965909090909091, 0.05965909090909091, 0.0625, 0.05965909090909091, 0.05397727272727273, 0.05397727272727273, 0.05397727272727273, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.048295454545454544, 0.048295454545454544, 0.09090909090909091, 0.05965909090909091, 0.056818181818181816, 0.05397727272727273, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05397727272727273, 0.05397727272727273, 0.05397727272727273, 0.05397727272727273, 0.056818181818181816, 0.056818181818181816, 0.05965909090909091, 0.0625, 0.05965909090909091, 0.05965909090909091, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.9488636363636364, 0.09375, 0.09659090909090909, 0.8267045454545454, 0.8607954545454546, 0.8721590909090909, 0.8409090909090909, 0.7982954545454546, 0.09943181818181818, 0.09659090909090909, 0.07670454545454546, 0.07102272727272728, 0.07386363636363637, 0.06818181818181818, 0.06534090909090909, 0.0625, 0.0625, 0.05965909090909091, 0.05965909090909091, 0.9375, 0.9460227272727273, 0.9403409090909091, 0.6789772727272727, 0.0625, 0.05965909090909091, 0.05965909090909091, 0.05397727272727273, 0.05397727272727273, 0.05397727272727273, 0.056818181818181816, 0.05397727272727273, 0.05397727272727273, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.05965909090909091, 0.05965909090909091, 0.05965909090909091, 0.05965909090909091, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.05397727272727273, 0.056818181818181816, 0.056818181818181816, 0.05113636363636364, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.11079545454545454, 0.7272727272727273, 0.9460227272727273, 0.7585227272727273, 0.6903409090909091, 0.06534090909090909, 0.05397727272727273, 0.05397727272727273, 0.05397727272727273, 0.05397727272727273, 0.056818181818181816, 0.05965909090909091, 0.0625, 0.0625, 0.06534090909090909, 0.06818181818181818, 0.08806818181818182, 0.07670454545454546, 0.09659090909090909, 0.07954545454545454, 0.07386363636363637, 0.07386363636363637, 0.06534090909090909, 0.07102272727272728, 0.06818181818181818, 0.07102272727272728, 0.07102272727272728, 0.07954545454545454, 0.08238636363636363, 0.08522727272727272, 0.08806818181818182, 0.09375, 0.10511363636363637, 0.10511363636363637, 0.09943181818181818, 0.09375, 0.09659090909090909, 0.09375, 0.09375, 0.09375, 0.09943181818181818, 0.09375, 0.09375, 0.09659090909090909, 0.10511363636363637, 0.10227272727272728, 0.10227272727272728, 0.10227272727272728, 0.10227272727272728, 0.10511363636363637, 0.21022727272727273, 0.5454545454545454, 0.46875, 0.11647727272727272, 0.11079545454545454, 0.11079545454545454, 0.11079545454545454, 0.11079545454545454, 0.11363636363636363, 0.11647727272727272, 0.12215909090909091, 0.125, 0.12215909090909091, 0.12215909090909091, 0.12215909090909091, 0.12215909090909091, 0.12215909090909091, 0.125, 0.125, 0.1278409090909091, 0.13068181818181818, 0.13068181818181818, 0.13068181818181818, 0.13068181818181818, 0.13352272727272727, 0.13920454545454544, 0.13920454545454544, 0.14204545454545456, 0.14204545454545456, 0.14488636363636365, 0.14772727272727273, 0.14772727272727273, 0.16761363636363635, 0.65625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SH3BP5.gap.json b/pfam_gap_rates/SH3BP5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a388f560fb094dbee46ec66f02e7751c9725f7fb
--- /dev/null
+++ b/pfam_gap_rates/SH3BP5.gap.json
@@ -0,0 +1 @@
+{"family": "SH3BP5", "n_seqs": 173, "length": 232, "gap_rates": [0.7745664739884393, 0.6242774566473989, 0.4624277456647399, 0.4161849710982659, 0.3872832369942196, 0.3699421965317919, 0.3468208092485549, 0.3179190751445087, 0.2832369942196532, 0.2774566473988439, 0.2774566473988439, 0.2774566473988439, 0.2774566473988439, 0.2774566473988439, 0.2658959537572254, 0.2658959537572254, 0.2658959537572254, 0.2658959537572254, 0.27167630057803466, 0.2658959537572254, 0.2658959537572254, 0.2658959537572254, 0.2658959537572254, 0.2658959537572254, 0.2658959537572254, 0.2658959537572254, 0.26011560693641617, 0.24277456647398843, 0.24277456647398843, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.2023121387283237, 0.20809248554913296, 0.20809248554913296, 0.2138728323699422, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.19653179190751446, 0.19653179190751446, 0.19653179190751446, 0.19653179190751446, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.9421965317919075, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.19653179190751446, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.2138728323699422, 0.2023121387283237, 0.20809248554913296, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.21965317919075145, 0.20809248554913296, 0.20809248554913296, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.20809248554913296, 0.20809248554913296, 0.2138728323699422, 0.2138728323699422, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.9479768786127167, 0.8092485549132948, 0.6242774566473989, 0.3988439306358382, 0.23699421965317918, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.19653179190751446, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.19653179190751446, 0.19653179190751446, 0.1907514450867052, 0.18497109826589594, 0.18497109826589594, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.21965317919075145, 0.23121387283236994, 0.23699421965317918, 0.23699421965317918, 0.23699421965317918, 0.23699421965317918, 0.23699421965317918, 0.23699421965317918, 0.23699421965317918, 0.23699421965317918, 0.23699421965317918, 0.23121387283236994, 0.23121387283236994, 0.24277456647398843, 0.2138728323699422, 0.2138728323699422, 0.2138728323699422, 0.20809248554913296, 0.2023121387283237, 0.2023121387283237, 0.19653179190751446, 0.19653179190751446, 0.19653179190751446, 0.19653179190751446, 0.1907514450867052, 0.1907514450867052, 0.18497109826589594, 0.18497109826589594, 0.1907514450867052, 0.2023121387283237, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.20809248554913296, 0.2138728323699422, 0.20809248554913296, 0.20809248554913296, 0.21965317919075145, 0.2254335260115607, 0.2254335260115607, 0.2254335260115607, 0.2254335260115607, 0.2254335260115607, 0.23121387283236994, 0.24277456647398843, 0.24277456647398843, 0.24277456647398843, 0.24277456647398843, 0.24277456647398843, 0.24277456647398843, 0.24855491329479767, 0.24855491329479767, 0.2543352601156069, 0.26011560693641617, 0.2658959537572254, 0.2947976878612717, 0.3988439306358382, 0.5144508670520231, 0.6358381502890174, 0.7745664739884393], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SH3_8.gap.json b/pfam_gap_rates/SH3_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f17adaf4e40cf9235fde2d9b79fc749b0aab643a
--- /dev/null
+++ b/pfam_gap_rates/SH3_8.gap.json
@@ -0,0 +1 @@
+{"family": "SH3_8", "n_seqs": 306, "length": 90, "gap_rates": [0.8758169934640523, 0.7058823529411765, 0.5784313725490197, 0.49019607843137253, 0.42810457516339867, 0.3562091503267974, 0.32679738562091504, 0.2908496732026144, 0.27450980392156865, 0.2647058823529412, 0.23529411764705882, 0.23202614379084968, 0.2647058823529412, 0.8954248366013072, 0.3888888888888889, 0.2875816993464052, 0.20588235294117646, 0.23529411764705882, 0.2679738562091503, 0.3431372549019608, 0.15359477124183007, 0.1437908496732026, 0.16993464052287582, 0.13398692810457516, 0.14052287581699346, 0.16993464052287582, 0.16013071895424835, 0.1503267973856209, 0.17973856209150327, 0.8333333333333334, 0.20588235294117646, 0.1895424836601307, 0.13071895424836602, 0.11764705882352941, 0.11764705882352941, 0.12091503267973856, 0.13725490196078433, 0.11437908496732026, 0.7875816993464052, 0.9281045751633987, 0.803921568627451, 0.6830065359477124, 0.06209150326797386, 0.058823529411764705, 0.05555555555555555, 0.0457516339869281, 0.0457516339869281, 0.03594771241830065, 0.03594771241830065, 0.0392156862745098, 0.026143790849673203, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.016339869281045753, 0.026143790849673203, 0.0392156862745098, 0.03594771241830065, 0.032679738562091505, 0.03594771241830065, 0.9052287581699346, 0.9248366013071896, 0.9313725490196079, 0.9150326797385621, 0.8333333333333334, 0.016339869281045753, 0.016339869281045753, 0.7973856209150327, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.9281045751633987, 0.7810457516339869, 0.06535947712418301, 0.0457516339869281, 0.049019607843137254, 0.05555555555555555, 0.026143790849673203, 0.28104575163398693, 0.02287581699346405, 0.026143790849673203, 0.0392156862745098, 0.08169934640522876, 0.12745098039215685, 0.1830065359477124, 0.2647058823529412, 0.7679738562091504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SHOCT.gap.json b/pfam_gap_rates/SHOCT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc270cd0780f27d82b4a5c16cf314ac0353ef3d9
--- /dev/null
+++ b/pfam_gap_rates/SHOCT.gap.json
@@ -0,0 +1 @@
+{"family": "SHOCT", "n_seqs": 1197, "length": 28, "gap_rates": [0.6140350877192983, 0.16541353383458646, 0.06098579782790309, 0.017543859649122806, 0.006683375104427736, 0.004177109440267335, 0.000835421888053467, 0.000835421888053467, 0.000835421888053467, 0.000835421888053467, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001670843776106934, 0.003341687552213868, 0.007518796992481203, 0.017543859649122806, 0.02506265664160401, 0.04594820384294068, 0.07602339181286549, 0.45864661654135336], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SLAC1.gap.json b/pfam_gap_rates/SLAC1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13a290e85788b256e19c15996faee80070fb87c3
--- /dev/null
+++ b/pfam_gap_rates/SLAC1.gap.json
@@ -0,0 +1 @@
+{"family": "SLAC1", "n_seqs": 1147, "length": 396, "gap_rates": [0.6826503923278117, 0.3870967741935484, 0.2885789014821273, 0.26155187445510025, 0.24934612031386225, 0.23801220575414123, 0.22755013077593722, 0.2136006974716652, 0.1944202266782912, 0.1891891891891892, 0.13513513513513514, 0.12641673931996514, 0.12641673931996514, 0.12292938099389712, 0.12205754141238012, 0.12118570183086312, 0.12118570183086312, 0.12118570183086312, 0.12118570183086312, 0.12118570183086312, 0.7088055797733217, 0.8517872711421098, 0.9459459459459459, 0.7663469921534438, 0.6809067131647777, 0.15257192676547515, 0.5196163905841326, 0.4019180470793374, 0.2903225806451613, 0.41238012205754143, 0.8186573670444638, 0.93025283347864, 0.9476896251089799, 0.8552746294681779, 0.47863993025283347, 0.3548387096774194, 0.23626852659110723, 0.22319093286835223, 0.2048823016564952, 0.1874455100261552, 0.15867480383609417, 0.8657367044463818, 0.8692240627724499, 0.8369659982563208, 0.12554489973844812, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SLBP_RNA_bind.gap.json b/pfam_gap_rates/SLBP_RNA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30ce8fbe2fa66c8d04f36f807fdd089643695819
--- /dev/null
+++ b/pfam_gap_rates/SLBP_RNA_bind.gap.json
@@ -0,0 +1 @@
+{"family": "SLBP_RNA_bind", "n_seqs": 207, "length": 74, "gap_rates": [0.714975845410628, 0.3188405797101449, 0.10628019323671498, 0.05314009661835749, 0.033816425120772944, 0.028985507246376812, 0.028985507246376812, 0.01932367149758454, 0.01932367149758454, 0.01932367149758454, 0.01932367149758454, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.01932367149758454, 0.024154589371980676, 0.01932367149758454, 0.01932367149758454, 0.01932367149758454, 0.01932367149758454, 0.014492753623188406, 0.00966183574879227, 0.014492753623188406, 0.01932367149758454, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.4975845410628019, 0.8405797101449275, 0.8260869565217391, 0.028985507246376812, 0.028985507246376812, 0.855072463768116, 0.8502415458937198, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.033816425120772944, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.033816425120772944, 0.033816425120772944, 0.043478260869565216, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.04830917874396135, 0.07729468599033816, 0.17391304347826086, 0.5024154589371981], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SMAP.gap.json b/pfam_gap_rates/SMAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46629ddb2791540f11327c6851759247400fa3e5
--- /dev/null
+++ b/pfam_gap_rates/SMAP.gap.json
@@ -0,0 +1 @@
+{"family": "SMAP", "n_seqs": 215, "length": 97, "gap_rates": [0.14883720930232558, 0.14883720930232558, 0.12558139534883722, 0.11627906976744186, 0.10697674418604651, 0.08372093023255814, 0.6372093023255814, 0.7488372093023256, 0.6465116279069767, 0.013953488372093023, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004651162790697674, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8372093023255814, 0.9162790697674419, 0.9209302325581395, 0.9395348837209302, 0.9441860465116279, 0.9395348837209302, 0.9255813953488372, 0.9209302325581395, 0.8744186046511628, 0.786046511627907, 0.2744186046511628, 0.2930232558139535, 0.1813953488372093, 0.15813953488372093, 0.10697674418604651, 0.09302325581395349, 0.09767441860465116, 0.08372093023255814, 0.06511627906976744, 0.08837209302325581, 0.13488372093023257, 0.3116279069767442, 0.6558139534883721, 0.8976744186046511, 0.9348837209302325, 0.9395348837209302, 0.9488372093023256, 0.9395348837209302, 0.9302325581395349, 0.8883720930232558, 0.4697674418604651, 0.25116279069767444, 0.13023255813953488, 0.046511627906976744, 0.027906976744186046, 0.013953488372093023, 0.004651162790697674, 0.004651162790697674, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.7348837209302326, 0.8465116279069768, 0.6651162790697674, 0.018604651162790697, 0.26976744186046514, 0.037209302325581395, 0.04186046511627907, 0.018604651162790697, 0.023255813953488372, 0.027906976744186046, 0.027906976744186046, 0.023255813953488372, 0.05116279069767442, 0.06511627906976744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SMG1.gap.json b/pfam_gap_rates/SMG1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..102e73b0e5d281261723a563afa6cc7ee279f8e1
--- /dev/null
+++ b/pfam_gap_rates/SMG1.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/SNARE.gap.json b/pfam_gap_rates/SNARE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2e4a78510114fd3cae494cd009d59cc027d1415
--- /dev/null
+++ b/pfam_gap_rates/SNARE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SNF2_assoc.gap.json b/pfam_gap_rates/SNF2_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50d46a3321a55202e33db43255338a43ac7ecca3
--- /dev/null
+++ b/pfam_gap_rates/SNF2_assoc.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SPOUT_MTase.gap.json b/pfam_gap_rates/SPOUT_MTase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..133f9916e287cfc9d19645bd550cc98eb982f733
--- /dev/null
+++ b/pfam_gap_rates/SPOUT_MTase.gap.json
@@ -0,0 +1 @@
+{"family": "SPOUT_MTase", "n_seqs": 1521, "length": 166, "gap_rates": [0.23865877712031558, 0.1393819855358317, 0.07429322813938198, 0.057856673241288625, 0.05391190006574622, 0.047337278106508875, 0.04667981591058514, 0.0440499671268902, 0.04339250493096647, 0.042077580539119, 0.042735042735042736, 0.04142011834319527, 0.03550295857988166, 0.040105193951347796, 0.05325443786982249, 0.03616042077580539, 0.029585798816568046, 0.02827087442472058, 0.02827087442472058, 0.024326101249178174, 0.024326101249178174, 0.023011176857330704, 0.023011176857330704, 0.023011176857330704, 0.022353714661406968, 0.022353714661406968, 0.021696252465483234, 0.021696252465483234, 0.021696252465483234, 0.9368836291913215, 0.9493754109138725, 0.9493754109138725, 0.9493754109138725, 0.9368836291913215, 0.9368836291913215, 0.07100591715976332, 0.0670611439842209, 0.030243261012491782, 0.021696252465483234, 0.021696252465483234, 0.0210387902695595, 0.021696252465483234, 0.022353714661406968, 0.021696252465483234, 0.084155161078238, 0.6383957922419461, 0.6791584483892176, 0.673241288625904, 0.4911242603550296, 0.32018408941485865, 0.24194608809993426, 0.18869165023011178, 0.168310322156476, 0.13477975016436555, 0.9171597633136095, 0.8073635765943459, 0.10453648915187377, 0.09861932938856016, 0.09335963182117028, 0.0861275476660092, 0.05917159763313609, 0.05917159763313609, 0.055226824457593686, 0.04930966469428008, 0.04667981591058514, 0.02695595003287311, 0.021696252465483234, 0.034845496383957925, 0.02695595003287311, 0.02695595003287311, 0.024326101249178174, 0.027613412228796843, 0.036817882971729124, 0.07889546351084813, 0.04865220249835635, 0.03353057199211045, 0.02564102564102564, 0.01775147928994083, 0.014464168310322156, 0.013149243918474688, 0.011176857330703484, 0.011176857330703484, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011176857330703484, 0.011834319526627219, 0.012491781722550954, 0.013806706114398421, 0.014464168310322156, 0.014464168310322156, 0.014464168310322156, 0.012491781722550954, 0.012491781722550954, 0.012491781722550954, 0.013149243918474688, 0.013806706114398421, 0.013149243918474688, 0.013149243918474688, 0.013806706114398421, 0.036817882971729124, 0.05128205128205128, 0.05325443786982249, 0.07166337935568705, 0.07429322813938198, 0.0440499671268902, 0.2603550295857988, 0.015779092702169626, 0.012491781722550954, 0.012491781722550954, 0.012491781722550954, 0.012491781722550954, 0.012491781722550954, 0.013149243918474688, 0.014464168310322156, 0.014464168310322156, 0.015121630506245891, 0.015121630506245891, 0.017094017094017096, 0.01643655489809336, 0.01775147928994083, 0.018408941485864562, 0.01972386587771203, 0.0190664036817883, 0.018408941485864562, 0.0190664036817883, 0.03879026955950033, 0.028928336620644313, 0.018408941485864562, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.014464168310322156, 0.014464168310322156, 0.014464168310322156, 0.015121630506245891, 0.015121630506245891, 0.015121630506245891, 0.015121630506245891, 0.014464168310322156, 0.015121630506245891, 0.015121630506245891, 0.015779092702169626, 0.015779092702169626, 0.015779092702169626, 0.015779092702169626, 0.01643655489809336, 0.017094017094017096, 0.0190664036817883, 0.022353714661406968, 0.022353714661406968, 0.024326101249178174, 0.026298487836949377, 0.02695595003287311, 0.02695595003287311, 0.027613412228796843, 0.028928336620644313, 0.030243261012491782, 0.030900723208415515, 0.030243261012491782, 0.030243261012491782, 0.03879026955950033], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPT2.gap.json b/pfam_gap_rates/SPT2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..edd872ed93b789c4a6ad38872d4fe7f6c4d4d864
--- /dev/null
+++ b/pfam_gap_rates/SPT2.gap.json
@@ -0,0 +1 @@
+{"family": "SPT2", "n_seqs": 289, "length": 124, "gap_rates": [0.9480968858131488, 0.8996539792387543, 0.8512110726643599, 0.7716262975778547, 0.7197231833910035, 0.6193771626297578, 0.5017301038062284, 0.44982698961937717, 0.41522491349480967, 0.38408304498269896, 0.31141868512110726, 0.2698961937716263, 0.2491349480968858, 0.23529411764705882, 0.23183391003460208, 0.22837370242214533, 0.22837370242214533, 0.22145328719723184, 0.21107266435986158, 0.21107266435986158, 0.21453287197231835, 0.21107266435986158, 0.2041522491349481, 0.22145328719723184, 0.2422145328719723, 0.25259515570934254, 0.9411764705882353, 0.8858131487889274, 0.2041522491349481, 0.20069204152249134, 0.1972318339100346, 0.20069204152249134, 0.2179930795847751, 0.20761245674740483, 0.23529411764705882, 0.314878892733564, 0.5363321799307958, 0.5051903114186851, 0.7231833910034602, 0.8339100346020761, 0.8858131487889274, 0.9100346020761245, 0.9238754325259516, 0.9342560553633218, 0.9377162629757786, 0.9273356401384083, 0.9204152249134948, 0.8996539792387543, 0.8581314878892734, 0.7785467128027682, 0.6539792387543253, 0.23183391003460208, 0.22491349480968859, 0.22145328719723184, 0.21453287197231835, 0.21453287197231835, 0.2179930795847751, 0.21453287197231835, 0.21453287197231835, 0.1903114186851211, 0.15916955017301038, 0.1314878892733564, 0.11764705882352941, 0.13494809688581316, 0.14186851211072665, 0.9411764705882353, 0.9065743944636678, 0.6747404844290658, 0.6262975778546713, 0.5709342560553633, 0.3633217993079585, 0.10380622837370242, 0.04844290657439446, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.03460207612456748, 0.04498269896193772, 0.23183391003460208, 0.16608996539792387, 0.12110726643598616, 0.04498269896193772, 0.006920415224913495, 0.006920415224913495, 0.006920415224913495, 0.006920415224913495, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.01384083044982699, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.020761245674740483, 0.020761245674740483, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02768166089965398, 0.031141868512110725, 0.03460207612456748, 0.03460207612456748, 0.03460207612456748, 0.03460207612456748, 0.03806228373702422, 0.03806228373702422, 0.03806228373702422, 0.05190311418685121, 0.058823529411764705, 0.07612456747404844, 0.07612456747404844, 0.08304498269896193, 0.09342560553633218, 0.09688581314878893, 0.09688581314878893, 0.09688581314878893, 0.11764705882352941, 0.1314878892733564, 0.15916955017301038, 0.18339100346020762, 0.22491349480968859, 0.5397923875432526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SQHop_cyclase_C.gap.json b/pfam_gap_rates/SQHop_cyclase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64219bb8c2b1882996535758bb897191bf6f2559
--- /dev/null
+++ b/pfam_gap_rates/SQHop_cyclase_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SRCR_2.gap.json b/pfam_gap_rates/SRCR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7b9ca3ce7ce6a5d561ada17af4683b25c3b63d4
--- /dev/null
+++ b/pfam_gap_rates/SRCR_2.gap.json
@@ -0,0 +1 @@
+{"family": "SRCR_2", "n_seqs": 141, "length": 104, "gap_rates": [0.9432624113475178, 0.44680851063829785, 0.3900709219858156, 0.3617021276595745, 0.2624113475177305, 0.19858156028368795, 0.19858156028368795, 0.1773049645390071, 0.16312056737588654, 0.16312056737588654, 0.15602836879432624, 0.3191489361702128, 0.2765957446808511, 0.11347517730496454, 0.07801418439716312, 0.06382978723404255, 0.028368794326241134, 0.014184397163120567, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.09219858156028368, 0.028368794326241134, 0.03546099290780142, 0.014184397163120567, 0.0425531914893617, 0.05673758865248227, 0.0851063829787234, 0.0851063829787234, 0.07801418439716312, 0.07801418439716312, 0.0851063829787234, 0.07801418439716312, 0.07092198581560284, 0.07801418439716312, 0.0851063829787234, 0.09219858156028368, 0.48226950354609927, 0.5319148936170213, 0.3475177304964539, 0.2695035460992908, 0.19148936170212766, 0.1347517730496454, 0.1276595744680851, 0.09929078014184398, 0.09219858156028368, 0.6879432624113475, 0.7943262411347518, 0.7659574468085106, 0.5319148936170213, 0.14893617021276595, 0.14184397163120568, 0.1347517730496454, 0.1347517730496454, 0.16312056737588654, 0.2127659574468085, 0.1773049645390071, 0.09219858156028368, 0.10638297872340426, 0.10638297872340426, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.9432624113475178, 0.19148936170212766, 0.09929078014184398, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.11347517730496454, 0.1276595744680851, 0.1276595744680851, 0.1347517730496454, 0.1347517730496454, 0.1347517730496454, 0.1347517730496454, 0.1347517730496454, 0.723404255319149, 0.6950354609929078, 0.14893617021276595, 0.18439716312056736, 0.19148936170212766, 0.20567375886524822, 0.36879432624113473], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRP54_N.gap.json b/pfam_gap_rates/SRP54_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c30615bed4db370fe53b40d2d434b0357bdc1389
--- /dev/null
+++ b/pfam_gap_rates/SRP54_N.gap.json
@@ -0,0 +1 @@
+{"family": "SRP54_N", "n_seqs": 4557, "length": 79, "gap_rates": [0.39082729866140004, 0.3059030063638359, 0.2163704191353961, 0.16589861751152074, 0.10489357033135835, 0.08997147245995173, 0.08163265306122448, 0.07461048935703314, 0.065174456879526, 0.07570770243581304, 0.11608514373491333, 0.33223612025455346, 0.3274083827079219, 0.3067807768268598, 0.05288567039719114, 0.03247750713188501, 0.029405310511301293, 0.02304147465437788, 0.017994294491990345, 0.016458196181698487, 0.013605442176870748, 0.009436032477507132, 0.007680491551459293, 0.005924950625411455, 0.005047180162387536, 0.3897300855826201, 0.3888523151195962, 0.3877551020408163, 0.3866578889620364, 0.0019749835418038184, 0.0017555409260478386, 0.0013166556945358788, 0.0010972130787798991, 0.0008777704630239193, 0.0006583278472679394, 0.00021944261575597982, 0.00021944261575597982, 0.00021944261575597982, 0.00043888523151195964, 0.00043888523151195964, 0.00043888523151195964, 0.00043888523151195964, 0.00043888523151195964, 0.00043888523151195964, 0.0006583278472679394, 0.0006583278472679394, 0.0006583278472679394, 0.0008777704630239193, 0.0010972130787798991, 0.0013166556945358788, 0.0010972130787798991, 0.01053324555628703, 0.0024138687733157777, 0.40026333113890716, 0.005266622778143515, 0.01184990125082291, 0.006802721088435374, 0.4511740179942945, 0.041474654377880185, 0.014263770024138688, 0.47245995172262456, 0.6056616194865043, 0.4748738204959403, 0.4704849681808207, 0.020847048496818083, 0.06363835856923415, 0.025016458196181698, 0.026333113890717578, 0.027430326969497477, 0.030502523590081192, 0.03225806451612903, 0.03796357252578451, 0.0445468509984639, 0.05047180162387536, 0.05771340794382269, 0.07329383366249725, 0.10994075049374588, 0.18411235461926706, 0.28856703971911346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRP72.gap.json b/pfam_gap_rates/SRP72.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0454c24af4db08717f0713571eab82ff75ed9c9c
--- /dev/null
+++ b/pfam_gap_rates/SRP72.gap.json
@@ -0,0 +1 @@
+{"family": "SRP72", "n_seqs": 274, "length": 69, "gap_rates": [0.8868613138686131, 0.8138686131386861, 0.7737226277372263, 0.7481751824817519, 0.7299270072992701, 0.6970802919708029, 0.6386861313868614, 0.5802919708029197, 0.5072992700729927, 0.45985401459854014, 0.4124087591240876, 0.3467153284671533, 0.3029197080291971, 0.2591240875912409, 0.23357664233576642, 0.22627737226277372, 0.20437956204379562, 0.19708029197080293, 0.17518248175182483, 0.8795620437956204, 0.8905109489051095, 0.9343065693430657, 0.916058394160584, 0.8905109489051095, 0.864963503649635, 0.24452554744525548, 0.10218978102189781, 0.0364963503649635, 0.029197080291970802, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.01824817518248175, 0.021897810218978103, 0.010948905109489052, 0.0, 0.0, 0.9452554744525548, 0.0, 0.0, 0.0, 0.043795620437956206, 0.0364963503649635, 0.7700729927007299, 0.791970802919708, 0.7627737226277372, 0.0, 0.0036496350364963502, 0.010948905109489052, 0.0072992700729927005, 0.9306569343065694, 0.9306569343065694, 0.0072992700729927005, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0072992700729927005, 0.043795620437956206, 0.07664233576642336, 0.14963503649635038, 0.26277372262773724], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRP9-21.gap.json b/pfam_gap_rates/SRP9-21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5a93bfa994cbf1bad1f3f2cacb35a44a57edc61
--- /dev/null
+++ b/pfam_gap_rates/SRP9-21.gap.json
@@ -0,0 +1 @@
+{"family": "SRP9-21", "n_seqs": 240, "length": 115, "gap_rates": [0.6083333333333333, 0.10416666666666667, 0.05416666666666667, 0.04583333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.025, 0.025, 0.025, 0.029166666666666667, 0.016666666666666666, 0.03333333333333333, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.025, 0.025, 0.9125, 0.9416666666666667, 0.95, 0.9333333333333333, 0.9, 0.675, 0.7083333333333334, 0.7291666666666666, 0.7541666666666667, 0.75, 0.7708333333333334, 0.775, 0.775, 0.7791666666666667, 0.7708333333333334, 0.7666666666666667, 0.7666666666666667, 0.7541666666666667, 0.7583333333333333, 0.7625, 0.7583333333333333, 0.75, 0.7541666666666667, 0.7458333333333333, 0.75, 0.7583333333333333, 0.7583333333333333, 0.7041666666666667, 0.8458333333333333, 0.8666666666666667, 0.8833333333333333, 0.9041666666666667, 0.9166666666666666, 0.9333333333333333, 0.9333333333333333, 0.925, 0.9041666666666667, 0.9, 0.875, 0.8583333333333333, 0.8416666666666667, 0.65, 0.6458333333333334, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.6625, 0.6625, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.03333333333333333, 0.0375, 0.075, 0.2, 0.22083333333333333, 0.22916666666666666, 0.2375, 0.25833333333333336, 0.3333333333333333, 0.4708333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRP_SPB.gap.json b/pfam_gap_rates/SRP_SPB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..922fd0e86ef104e1f390a3f403755444240ec842
--- /dev/null
+++ b/pfam_gap_rates/SRP_SPB.gap.json
@@ -0,0 +1 @@
+{"family": "SRP_SPB", "n_seqs": 2436, "length": 108, "gap_rates": [0.47619047619047616, 0.026683087027914613, 0.020114942528735632, 0.018883415435139574, 0.018883415435139574, 0.01847290640394089, 0.0180623973727422, 0.0180623973727422, 0.0180623973727422, 0.017651888341543513, 0.016420361247947456, 0.01683087027914614, 0.01600985221674877, 0.014778325123152709, 0.014367816091954023, 0.013957307060755337, 0.013546798029556651, 0.015188834154351396, 0.014367816091954023, 0.012725779967159278, 0.013136288998357963, 0.012725779967159278, 0.011904761904761904, 0.011494252873563218, 0.008620689655172414, 0.008210180623973728, 0.0090311986863711, 0.0090311986863711, 0.011494252873563218, 0.0332512315270936, 0.013546798029556651, 0.01847290640394089, 0.013546798029556651, 0.39901477832512317, 0.9392446633825944, 0.6962233169129721, 0.1892446633825944, 0.015188834154351396, 0.19663382594417078, 0.1654351395730706, 0.013546798029556651, 0.8649425287356322, 0.9400656814449918, 0.8472906403940886, 0.011083743842364532, 0.01847290640394089, 0.011083743842364532, 0.005747126436781609, 0.005747126436781609, 0.006157635467980296, 0.006157635467980296, 0.006157635467980296, 0.006157635467980296, 0.006157635467980296, 0.0069786535303776685, 0.0069786535303776685, 0.006568144499178982, 0.006157635467980296, 0.006157635467980296, 0.006157635467980296, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.005747126436781609, 0.006568144499178982, 0.006157635467980296, 0.006157635467980296, 0.006157635467980296, 0.006157635467980296, 0.006157635467980296, 0.7561576354679803, 0.011083743842364532, 0.0361247947454844, 0.016420361247947456, 0.0069786535303776685, 0.9100985221674877, 0.8407224958949097, 0.0069786535303776685, 0.0069786535303776685, 0.0069786535303776685, 0.0069786535303776685, 0.006568144499178982, 0.0069786535303776685, 0.0069786535303776685, 0.0069786535303776685, 0.007389162561576354, 0.007799671592775041, 0.007799671592775041, 0.007799671592775041, 0.008210180623973728, 0.007799671592775041, 0.008210180623973728, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.009441707717569787, 0.009441707717569787, 0.009852216748768473, 0.010262725779967159, 0.010262725779967159, 0.011494252873563218, 0.011904761904761904, 0.012725779967159278, 0.014367816091954023, 0.01600985221674877, 0.026683087027914613, 0.07881773399014778, 0.2319376026272578], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SUI1.gap.json b/pfam_gap_rates/SUI1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69966b8f11932edc3dd6e1fa080a7c3902290696
--- /dev/null
+++ b/pfam_gap_rates/SUI1.gap.json
@@ -0,0 +1 @@
+{"family": "SUI1", "n_seqs": 1557, "length": 83, "gap_rates": [0.5138086062941555, 0.271034039820167, 0.11946050096339114, 0.08734746307000642, 0.06165703275529865, 0.04945407835581246, 0.04303147077713552, 0.036608863198458574, 0.028259473346178548, 0.021836865767501604, 0.019267822736030827, 0.036608863198458574, 0.027617212588310854, 0.7777777777777778, 0.03147077713551702, 0.01605651894669236, 0.014771997430956968, 0.014771997430956968, 0.01348747591522158, 0.01348747591522158, 0.012202954399486191, 0.010918432883750802, 0.010276172125883108, 0.009633911368015413, 0.3134232498394348, 0.01991008349389852, 0.012202954399486191, 0.014129736673089274, 0.007064868336544637, 0.00449582530507386, 0.0032113037893384713, 0.0032113037893384713, 0.0032113037893384713, 0.0038535645472061657, 0.0032113037893384713, 0.0032113037893384713, 0.0032113037893384713, 0.0038535645472061657, 0.0038535645472061657, 0.005138086062941554, 0.009633911368015413, 0.00899165061014772, 0.00899165061014772, 0.009633911368015413, 0.010918432883750802, 0.012845215157353885, 0.012845215157353885, 0.016698779704560053, 0.32241490044958254, 0.03018625561978163, 0.8818240205523442, 0.8336544637122671, 0.03147077713551702, 0.045600513808606295, 0.4630700064226076, 0.8715478484264612, 0.9184328837508028, 0.5028901734104047, 0.4168272318561336, 0.34425176621708414, 0.024405908798972382, 0.019267822736030827, 0.01991008349389852, 0.01991008349389852, 0.019267822736030827, 0.02119460500963391, 0.02119460500963391, 0.021836865767501604, 0.023121387283236993, 0.02697495183044316, 0.028259473346178548, 0.028259473346178548, 0.029543994861913937, 0.0340398201669878, 0.0340398201669878, 0.03596660244059088, 0.03917790622992935, 0.0449582530507386, 0.0899165061014772, 0.7880539499036608, 0.3397559409120103, 0.4386640976236352, 0.8208092485549133], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SWIM.gap.json b/pfam_gap_rates/SWIM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5339814ddbfad9bcad6eaf137c0e86d4742ad623
--- /dev/null
+++ b/pfam_gap_rates/SWIM.gap.json
@@ -0,0 +1 @@
+{"family": "SWIM", "n_seqs": 2051, "length": 51, "gap_rates": [0.7742564602632862, 0.7176986835689907, 0.6645538761579717, 0.6499268649439298, 0.6299366162847392, 0.6153096050706972, 0.6933203315455875, 0.7464651389566065, 0.7805948317893711, 0.8605558264261336, 0.9180887372013652, 0.9366162847391516, 0.946367625548513, 0.9439297903461726, 0.9258898098488543, 0.8956606533398342, 0.8317893710385178, 0.6299366162847392, 0.5407118478790833, 0.44124817162359825, 0.3622623110677718, 0.18917601170160897, 0.1370063383715261, 0.035592393954168695, 0.007313505607020965, 0.005363237445148708, 0.004388103364212579, 0.004388103364212579, 0.0901999024865919, 0.25109702584105315, 0.302779132130668, 0.3700633837152609, 0.9312530472940029, 0.9327157484154072, 0.9219892735251097, 0.03461725987323257, 0.008288639687957094, 0.0019502681618722574, 0.0024378352023403218, 0.0034129692832764505, 0.004388103364212579, 0.0048756704046806435, 0.006825938566552901, 0.019990248659190638, 0.05314480741101901, 0.07752315943442223, 0.12920526572403707, 0.23305704534373475, 0.4202827888834715, 0.6713798147245246, 0.9497805948317893], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SWM_repeat.gap.json b/pfam_gap_rates/SWM_repeat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7dfaef0a8336d66f54a2a1548610967e36c7e54
--- /dev/null
+++ b/pfam_gap_rates/SWM_repeat.gap.json
@@ -0,0 +1 @@
+{"family": "SWM_repeat", "n_seqs": 267, "length": 96, "gap_rates": [0.8314606741573034, 0.3408239700374532, 0.2846441947565543, 0.25842696629213485, 0.20599250936329588, 0.1797752808988764, 0.16853932584269662, 0.15730337078651685, 0.11235955056179775, 0.6816479400749064, 0.7640449438202247, 0.7715355805243446, 0.7528089887640449, 0.6741573033707865, 0.026217228464419477, 0.026217228464419477, 0.026217228464419477, 0.0149812734082397, 0.947565543071161, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.5692883895131086, 0.5543071161048689, 0.00749063670411985, 0.0, 0.0, 0.0, 0.0, 0.6292134831460674, 0.7265917602996255, 0.15355805243445692, 0.06367041198501873, 0.0299625468164794, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003745318352059925, 0.8089887640449438, 0.846441947565543, 0.7116104868913857, 0.003745318352059925, 0.011235955056179775, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.00749063670411985, 0.00749063670411985, 0.003745318352059925, 0.003745318352059925, 0.00749063670411985, 0.00749063670411985, 0.41947565543071164, 0.35580524344569286, 0.00749063670411985, 0.00749063670411985, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.011235955056179775, 0.011235955056179775, 0.0149812734082397, 0.018726591760299626, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.018726591760299626, 0.0299625468164794, 0.09363295880149813, 0.1947565543071161, 0.31835205992509363, 0.797752808988764], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S_locus_glycop.gap.json b/pfam_gap_rates/S_locus_glycop.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f805e1b03cad2713f2aa34940a012de201667e0
--- /dev/null
+++ b/pfam_gap_rates/S_locus_glycop.gap.json
@@ -0,0 +1 @@
+{"family": "S_locus_glycop", "n_seqs": 1905, "length": 118, "gap_rates": [0.5391076115485565, 0.462992125984252, 0.4582677165354331, 0.45511811023622045, 0.4477690288713911, 0.4351706036745407, 0.43622047244094486, 0.42992125984251967, 0.42782152230971127, 0.4246719160104987, 0.4220472440944882, 0.4167979002624672, 0.4131233595800525, 0.4120734908136483, 0.410498687664042, 0.4115485564304462, 0.4099737532808399, 0.4094488188976378, 0.9433070866141732, 0.47244094488188976, 0.44724409448818897, 0.4146981627296588, 0.4010498687664042, 0.35800524934383204, 0.34330708661417325, 0.33228346456692914, 0.3186351706036745, 0.31391076115485567, 0.3186351706036745, 0.8918635170603675, 0.779002624671916, 0.31548556430446195, 0.30026246719160105, 0.28398950131233597, 0.2761154855643045, 0.2671916010498688, 0.25774278215223095, 0.24671916010498687, 0.23517060367454068, 0.2283464566929134, 0.2215223097112861, 0.2398950131233596, 0.2199475065616798, 0.2409448818897638, 0.9412073490813648, 0.16325459317585303, 0.14015748031496064, 0.11601049868766404, 0.08713910761154856, 0.06194225721784777, 0.04146981627296588, 0.03727034120734908, 0.03622047244094488, 0.032020997375328084, 0.030446194225721784, 0.028346456692913385, 0.028871391076115485, 0.024146981627296588, 0.025196850393700787, 0.027296587926509186, 0.024671916010498687, 0.02152230971128609, 0.02152230971128609, 0.02099737532808399, 0.02204724409448819, 0.07664041994750656, 0.06089238845144357, 0.06089238845144357, 0.05301837270341207, 0.04041994750656168, 0.03307086614173228, 0.01942257217847769, 0.01942257217847769, 0.01889763779527559, 0.01784776902887139, 0.01994750656167979, 0.01994750656167979, 0.02047244094488189, 0.02047244094488189, 0.01942257217847769, 0.01942257217847769, 0.030446194225721784, 0.014698162729658792, 0.01627296587926509, 0.01837270341207349, 0.01732283464566929, 0.01627296587926509, 0.01784776902887139, 0.01679790026246719, 0.01784776902887139, 0.01784776902887139, 0.01889763779527559, 0.027296587926509186, 0.01889763779527559, 0.01889763779527559, 0.01994750656167979, 0.8766404199475065, 0.8278215223097113, 0.01994750656167979, 0.02152230971128609, 0.030446194225721784, 0.047244094488188976, 0.050918635170603674, 0.03622047244094488, 0.026771653543307086, 0.9343832020997376, 0.9023622047244094, 0.026246719160104987, 0.028346456692913385, 0.029921259842519685, 0.04304461942257218, 0.07244094488188976, 0.08556430446194226, 0.09553805774278215, 0.11968503937007874, 0.231496062992126, 0.4057742782152231, 0.8299212598425196], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SapB_1.gap.json b/pfam_gap_rates/SapB_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1f70804df089c768e4adf1ed3f8f23e2b24eb5b
--- /dev/null
+++ b/pfam_gap_rates/SapB_1.gap.json
@@ -0,0 +1 @@
+{"family": "SapB_1", "n_seqs": 838, "length": 38, "gap_rates": [0.7935560859188544, 0.07637231503579953, 0.00477326968973747, 0.00477326968973747, 0.003579952267303103, 0.003579952267303103, 0.003579952267303103, 0.003579952267303103, 0.002386634844868735, 0.0011933174224343676, 0.0011933174224343676, 0.0011933174224343676, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011933174224343676, 0.0011933174224343676, 0.002386634844868735, 0.002386634844868735, 0.0, 0.002386634844868735, 0.003579952267303103, 0.003579952267303103, 0.0059665871121718375, 0.0059665871121718375, 0.003579952267303103, 0.003579952267303103, 0.007159904534606206, 0.010739856801909307, 0.010739856801909307, 0.011933174224343675, 0.03937947494033413, 0.06921241050119331, 0.1801909307875895, 0.3329355608591885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SapC.gap.json b/pfam_gap_rates/SapC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ffa0031a7f79df42c83c70797356b39d976f95af
--- /dev/null
+++ b/pfam_gap_rates/SapC.gap.json
@@ -0,0 +1 @@
+{"family": "SapC", "n_seqs": 254, "length": 234, "gap_rates": [0.3188976377952756, 0.16141732283464566, 0.11811023622047244, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.07480314960629922, 0.06299212598425197, 0.06299212598425197, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.051181102362204724, 0.07874015748031496, 0.9133858267716536, 0.08267716535433071, 0.07874015748031496, 0.06692913385826772, 0.05905511811023622, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.023622047244094488, 0.023622047244094488, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.015748031496062992, 0.015748031496062992, 0.011811023622047244, 0.011811023622047244, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec6.gap.json b/pfam_gap_rates/Sec6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0aebed2dcaf4dc88337cd394d8b2155d33b53016
--- /dev/null
+++ b/pfam_gap_rates/Sec6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec7.gap.json b/pfam_gap_rates/Sec7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2fe952fddc90c196f2d21648530a65f55cbef82a
--- /dev/null
+++ b/pfam_gap_rates/Sec7.gap.json
@@ -0,0 +1 @@
+{"family": "Sec7", "n_seqs": 1861, "length": 202, "gap_rates": [0.7146695325094036, 0.46695325094035467, 0.41321869962385815, 0.38366469639978507, 0.353573347662547, 0.3412144008597528, 0.33422890918860826, 0.32563138097796884, 0.32079527135948416, 0.31757119828049435, 0.31649650725416445, 0.31327243417517464, 0.30843632455668996, 0.3019881783987104, 0.29768941429339063, 0.2955400322407308, 0.2933906501880709, 0.28855454056958624, 0.28533046749059643, 0.28371843095110155, 0.2821063944116067, 0.27888232133261687, 0.2783449758194519, 0.27565824825362706, 0.27458355722729716, 0.27135948414830735, 0.26706072004298764, 0.2675980655561526, 0.2729715206878023, 0.8049435787211177, 0.9451907576571735, 0.9425040300913488, 0.7565824825362708, 0.2681354110693176, 0.8704997313272435, 0.21923696937130574, 0.19828049435787212, 0.18054809242342826, 0.1724879097259538, 0.15797958087049974, 0.15368081676518, 0.14562063406770553, 0.13917248790972594, 0.13433637829124126, 0.13326168726491133, 0.13326168726491133, 0.8495432563138098, 0.13326168726491133, 0.1123052122514777, 0.10370768404083826, 0.09564750134336378, 0.08866200967221924, 0.08328855454056959, 0.07898979043524987, 0.0784524449220849, 0.07630306286942504, 0.07361633530360022, 0.07146695325094035, 0.0693175711982805, 0.06824288017195057, 0.0660934981192907, 0.06555615260612574, 0.06555615260612574, 0.0677055346587856, 0.0660934981192907, 0.2697474476088125, 0.9489521762493284, 0.8103170338527673, 0.26706072004298764, 0.08651262761955937, 0.08221386351423966, 0.06018269747447609, 0.05964535196131112, 0.05749596990865126, 0.05642127888232133, 0.056958624395486296, 0.05642127888232133, 0.053197205803331545, 0.05212251477700161, 0.053197205803331545, 0.05158516926383665, 0.05158516926383665, 0.04889844169801182, 0.04889844169801182, 0.04782375067168189, 0.05373455131649651, 0.04782375067168189, 0.045137023105857065, 0.0445996775926921, 0.0445996775926921, 0.04567436861902203, 0.045137023105857065, 0.04137560451370231, 0.04030091348737238, 0.04083825900053734, 0.04083825900053734, 0.04137560451370231, 0.04030091348737238, 0.039763567974207416, 0.03868887694787748, 0.039763567974207416, 0.03868887694787748, 0.04030091348737238, 0.03922622246104245, 0.039763567974207416, 0.04030091348737238, 0.039763567974207416, 0.03922622246104245, 0.04030091348737238, 0.04030091348737238, 0.04030091348737238, 0.03868887694787748, 0.03922622246104245, 0.03922622246104245, 0.04083825900053734, 0.04137560451370231, 0.04245029554003224, 0.04406233207952714, 0.04406233207952714, 0.047286405158516925, 0.06824288017195057, 0.05964535196131112, 0.7931219774314885, 0.9285330467490597, 0.8619022031166039, 0.7324019344438474, 0.05964535196131112, 0.05588393336915637, 0.055346587855991405, 0.05588393336915637, 0.8839333691563676, 0.05373455131649651, 0.053197205803331545, 0.052659860290166574, 0.05051047823750672, 0.052659860290166574, 0.052659860290166574, 0.05588393336915637, 0.052659860290166574, 0.052659860290166574, 0.05373455131649651, 0.054809242342826435, 0.05642127888232133, 0.05642127888232133, 0.05642127888232133, 0.055346587855991405, 0.054809242342826435, 0.055346587855991405, 0.05373455131649651, 0.05427189682966147, 0.055346587855991405, 0.05588393336915637, 0.05588393336915637, 0.06018269747447609, 0.06394411606663085, 0.06501880709296078, 0.06179473401397098, 0.056958624395486296, 0.8237506716818914, 0.7893605588393336, 0.060720042987641054, 0.05910800644814616, 0.9446534121440086, 0.938205265986029, 0.05427189682966147, 0.052659860290166574, 0.05373455131649651, 0.05373455131649651, 0.05373455131649651, 0.05373455131649651, 0.05373455131649651, 0.055346587855991405, 0.05588393336915637, 0.05642127888232133, 0.06878022568511553, 0.9441160666308437, 0.09188608275120903, 0.1708758731864589, 0.1724879097259538, 0.2181622783449758, 0.9435787211176787, 0.16227834497581944, 0.1493820526598603, 0.3019881783987104, 0.1321869962385814, 0.13272434175174638, 0.1370231058570661, 0.13756045137023107, 0.13970983342289092, 0.13970983342289092, 0.14669532509403546, 0.1509940891993552, 0.15260612573885007, 0.15314347125201505, 0.15314347125201505, 0.15583019881783988, 0.15797958087049974, 0.1800107469102633, 0.19613111230521224, 0.21440085975282105, 0.24234282643739924, 0.3901128425577646], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Secretin_N_2.gap.json b/pfam_gap_rates/Secretin_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb04b6685de7f01575d9e68a235fd43460fdd677
--- /dev/null
+++ b/pfam_gap_rates/Secretin_N_2.gap.json
@@ -0,0 +1 @@
+{"family": "Secretin_N_2", "n_seqs": 137, "length": 118, "gap_rates": [0.24817518248175183, 0.11678832116788321, 0.08759124087591241, 0.058394160583941604, 0.051094890510948905, 0.051094890510948905, 0.051094890510948905, 0.058394160583941604, 0.051094890510948905, 0.051094890510948905, 0.058394160583941604, 0.051094890510948905, 0.051094890510948905, 0.051094890510948905, 0.1897810218978102, 0.18248175182481752, 0.058394160583941604, 0.051094890510948905, 0.058394160583941604, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.043795620437956206, 0.029197080291970802, 0.029197080291970802, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.043795620437956206, 0.0364963503649635, 0.021897810218978103, 0.021897810218978103, 0.029197080291970802, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.072992700729927, 0.072992700729927, 0.8978102189781022, 0.9197080291970803, 0.927007299270073, 0.948905109489051, 0.9343065693430657, 0.927007299270073, 0.9124087591240876, 0.8759124087591241, 0.45985401459854014, 0.48905109489051096, 0.6861313868613139, 0.19708029197080293, 0.15328467153284672, 0.10948905109489052, 0.10948905109489052, 0.10218978102189781, 0.21897810218978103, 0.19708029197080293, 0.22627737226277372, 0.35766423357664234, 0.39416058394160586, 0.40145985401459855, 0.4233576642335766, 0.40875912408759124, 0.25547445255474455, 0.6204379562043796, 0.7299270072992701, 0.7737226277372263, 0.8248175182481752, 0.8832116788321168, 0.9343065693430657, 0.9416058394160584, 0.9124087591240876, 0.8686131386861314, 0.8102189781021898, 0.7518248175182481, 0.6496350364963503, 0.583941605839416, 0.021897810218978103, 0.021897810218978103, 0.014598540145985401, 0.014598540145985401, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.072992700729927, 0.781021897810219, 0.11678832116788321, 0.1386861313868613, 0.19708029197080293, 0.25547445255474455, 0.291970802919708, 0.291970802919708, 0.32116788321167883, 0.3284671532846715, 0.35766423357664234, 0.3795620437956204, 0.41605839416058393, 0.5036496350364964, 0.7007299270072993], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SepSecS.gap.json b/pfam_gap_rates/SepSecS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4ea6f9be2f14f7c4320d6267efa888bfb96743a
--- /dev/null
+++ b/pfam_gap_rates/SepSecS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Septin.gap.json b/pfam_gap_rates/Septin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c63ccccda0ac49102114c5f051e399ed540e15ff
--- /dev/null
+++ b/pfam_gap_rates/Septin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Septum_form.gap.json b/pfam_gap_rates/Septum_form.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25906a3cc932adf05215c5a5efd306cefbb67eb6
--- /dev/null
+++ b/pfam_gap_rates/Septum_form.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Shal-type.gap.json b/pfam_gap_rates/Shal-type.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb809c401992d499ae1baeb54f6532e8d855f7c9
--- /dev/null
+++ b/pfam_gap_rates/Shal-type.gap.json
@@ -0,0 +1 @@
+{"family": "Shal-type", "n_seqs": 111, "length": 29, "gap_rates": [0.1891891891891892, 0.15315315315315314, 0.14414414414414414, 0.05405405405405406, 0.036036036036036036, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5135135135135135, 0.11711711711711711, 0.18018018018018017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma70_r1_1.gap.json b/pfam_gap_rates/Sigma70_r1_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56bea864d669aedcd21b578d3f9bc270c6fb76ff
--- /dev/null
+++ b/pfam_gap_rates/Sigma70_r1_1.gap.json
@@ -0,0 +1 @@
+{"family": "Sigma70_r1_1", "n_seqs": 1564, "length": 86, "gap_rates": [0.7845268542199488, 0.5473145780051151, 0.3516624040920716, 0.19309462915601022, 0.12404092071611253, 0.07161125319693094, 0.04219948849104859, 0.017263427109974423, 0.9424552429667519, 0.013427109974424553, 0.00959079283887468, 0.008312020460358057, 0.007033248081841432, 0.00639386189258312, 0.005754475703324808, 0.0076726342710997444, 0.004475703324808184, 0.0019181585677749361, 0.0019181585677749361, 0.9245524296675192, 0.0019181585677749361, 0.0019181585677749361, 0.0019181585677749361, 0.0019181585677749361, 0.0012787723785166241, 0.0012787723785166241, 0.0012787723785166241, 0.0019181585677749361, 0.0012787723785166241, 0.0012787723785166241, 0.0012787723785166241, 0.9398976982097187, 0.03260869565217391, 0.011508951406649617, 0.00319693094629156, 0.004475703324808184, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0012787723785166241, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0006393861892583121, 0.0012787723785166241, 0.0006393861892583121, 0.0006393861892583121, 0.0012787723785166241, 0.004475703324808184, 0.005754475703324808, 0.008312020460358057, 0.012148337595907928, 0.01854219948849105, 0.920076726342711, 0.8548593350383632, 0.1534526854219949, 0.13554987212276215, 0.1323529411764706, 0.13171355498721227, 0.2078005115089514, 0.22698209718670076, 0.7525575447570333, 0.23081841432225064, 0.21547314578005114, 0.20588235294117646, 0.21675191815856779, 0.23657289002557544, 0.2768542199488491, 0.3248081841432225, 0.3868286445012788, 0.44437340153452687, 0.5345268542199488, 0.5677749360613811, 0.571611253196931, 0.6336317135549873, 0.717391304347826, 0.8164961636828645, 0.862531969309463, 0.9060102301790282], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma_reg_C.gap.json b/pfam_gap_rates/Sigma_reg_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3300a8f62efc403287ce91cb5e98b5e90b51999
--- /dev/null
+++ b/pfam_gap_rates/Sigma_reg_C.gap.json
@@ -0,0 +1 @@
+{"family": "Sigma_reg_C", "n_seqs": 103, "length": 214, "gap_rates": [0.23300970873786409, 0.1941747572815534, 0.13592233009708737, 0.0970873786407767, 0.21359223300970873, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.07766990291262135, 0.06796116504854369, 0.05825242718446602, 0.941747572815534, 0.941747572815534, 0.9029126213592233, 0.6019417475728155, 0.21359223300970873, 0.11650485436893204, 0.07766990291262135, 0.06796116504854369, 0.06796116504854369, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.0970873786407767, 0.1262135922330097, 0.5631067961165048, 0.6310679611650486, 0.6601941747572816, 0.7475728155339806, 0.7669902912621359, 0.8737864077669902, 0.941747572815534, 0.941747572815534, 0.941747572815534, 0.941747572815534, 0.912621359223301, 0.7766990291262136, 0.7475728155339806, 0.7184466019417476, 0.6407766990291263, 0.6116504854368932, 0.5436893203883495, 0.4854368932038835, 0.3883495145631068, 0.3300970873786408, 0.22330097087378642, 0.20388349514563106, 0.13592233009708737, 0.0970873786407767, 0.08737864077669903, 0.06796116504854369, 0.06796116504854369, 0.05825242718446602, 0.05825242718446602, 0.10679611650485436, 0.11650485436893204, 0.11650485436893204, 0.9320388349514563, 0.8640776699029126, 0.1553398058252427, 0.14563106796116504, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.10679611650485436, 0.10679611650485436, 0.10679611650485436, 0.5728155339805825, 0.5436893203883495, 0.5339805825242718, 0.5436893203883495, 0.5145631067961165, 0.4854368932038835, 0.6213592233009708, 0.6504854368932039, 0.7087378640776699, 0.7475728155339806, 0.7766990291262136, 0.7864077669902912, 0.8058252427184466, 0.8155339805825242, 0.8155339805825242, 0.8446601941747572, 0.8640776699029126, 0.8932038834951457, 0.9223300970873787, 0.912621359223301, 0.883495145631068, 0.8543689320388349, 0.8252427184466019, 0.8155339805825242, 0.8058252427184466, 0.7961165048543689, 0.7766990291262136, 0.7669902912621359, 0.7087378640776699, 0.6699029126213593, 0.6310679611650486, 0.6213592233009708, 0.4854368932038835, 0.22330097087378642, 0.14563106796116504, 0.10679611650485436, 0.06796116504854369, 0.06796116504854369, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.04854368932038835, 0.04854368932038835, 0.06796116504854369, 0.04854368932038835, 0.06796116504854369, 0.18446601941747573, 0.21359223300970873, 0.21359223300970873, 0.20388349514563106, 0.20388349514563106, 0.30097087378640774, 0.4368932038834951, 0.4077669902912621, 0.3786407766990291, 0.36893203883495146, 0.3300970873786408, 0.36893203883495146, 0.4563106796116505, 0.5631067961165048, 0.5048543689320388, 0.8640776699029126, 0.941747572815534, 0.941747572815534, 0.7572815533980582, 0.06796116504854369, 0.04854368932038835, 0.038834951456310676, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.019417475728155338, 0.02912621359223301, 0.02912621359223301, 0.7378640776699029, 0.7766990291262136, 0.8058252427184466, 0.8058252427184466, 0.7572815533980582, 0.7281553398058253, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.07766990291262135, 0.08737864077669903, 0.11650485436893204, 0.1650485436893204, 0.6601941747572816], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sin_N.gap.json b/pfam_gap_rates/Sin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e842dfd4d3b31ca7c1ad1ebfc48e27f51c0fc6d
--- /dev/null
+++ b/pfam_gap_rates/Sin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Sin_N", "n_seqs": 366, "length": 561, "gap_rates": [0.46994535519125685, 0.3469945355191257, 0.30601092896174864, 0.28688524590163933, 0.2786885245901639, 0.2786885245901639, 0.273224043715847, 0.2568306010928962, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.9480874316939891, 0.9480874316939891, 0.23770491803278687, 0.23770491803278687, 0.26229508196721313, 0.825136612021858, 0.2459016393442623, 0.24043715846994534, 0.23497267759562843, 0.8579234972677595, 0.7814207650273224, 0.2677595628415301, 0.24863387978142076, 0.23224043715846995, 0.22950819672131148, 0.226775956284153, 0.226775956284153, 0.226775956284153, 0.22404371584699453, 0.22131147540983606, 0.22131147540983606, 0.22131147540983606, 0.22131147540983606, 0.33060109289617484, 0.25956284153005466, 0.23224043715846995, 0.2568306010928962, 0.9180327868852459, 0.7295081967213115, 0.33060109289617484, 0.2677595628415301, 0.23770491803278687, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Sipho_tail.gap.json b/pfam_gap_rates/Sipho_tail.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45f65a7e955bbb5b9dd3a73d05179ada90bade50
--- /dev/null
+++ b/pfam_gap_rates/Sipho_tail.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ski_Sno.gap.json b/pfam_gap_rates/Ski_Sno.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f951264774c660c8e85f2bca4cb39d404edf1f6a
--- /dev/null
+++ b/pfam_gap_rates/Ski_Sno.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Slu7.gap.json b/pfam_gap_rates/Slu7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77e06c72ac5b2a10cb80fe470890c0f2b67b457a
--- /dev/null
+++ b/pfam_gap_rates/Slu7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Smg4_UPF3.gap.json b/pfam_gap_rates/Smg4_UPF3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5ebf0b1ebd99662621b7fc51f92c93e4bd89201
--- /dev/null
+++ b/pfam_gap_rates/Smg4_UPF3.gap.json
@@ -0,0 +1 @@
+{"family": "Smg4_UPF3", "n_seqs": 337, "length": 202, "gap_rates": [0.7626112759643917, 0.32344213649851633, 0.16023738872403562, 0.13649851632047477, 0.10979228486646884, 0.09792284866468842, 0.09198813056379822, 0.09198813056379822, 0.09198813056379822, 0.09198813056379822, 0.09198813056379822, 0.09198813056379822, 0.08902077151335312, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.08011869436201781, 0.08011869436201781, 0.6973293768545994, 0.9169139465875371, 0.9287833827893175, 0.9465875370919882, 0.9495548961424333, 0.9376854599406528, 0.9258160237388724, 0.7210682492581603, 0.599406528189911, 0.3857566765578635, 0.12166172106824925, 0.09495548961424333, 0.0830860534124629, 0.37388724035608306, 0.08605341246290801, 0.08011869436201781, 0.08011869436201781, 0.08011869436201781, 0.08011869436201781, 0.08011869436201781, 0.08011869436201781, 0.08011869436201781, 0.08011869436201781, 0.08011869436201781, 0.08011869436201781, 0.5964391691394659, 0.5756676557863502, 0.56973293768546, 0.1394658753709199, 0.10979228486646884, 0.09198813056379822, 0.0830860534124629, 0.07418397626112759, 0.08011869436201781, 0.06824925816023739, 0.0712166172106825, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.07418397626112759, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.06528189910979229, 0.06231454005934718, 0.06231454005934718, 0.05934718100890208, 0.05934718100890208, 0.05934718100890208, 0.05637982195845697, 0.05637982195845697, 0.06528189910979229, 0.06824925816023739, 0.06824925816023739, 0.06824925816023739, 0.0712166172106825, 0.06824925816023739, 0.06528189910979229, 0.08902077151335312, 0.08902077151335312, 0.08011869436201781, 0.05637982195845697, 0.8011869436201781, 0.8071216617210683, 0.8071216617210683, 0.9376854599406528, 0.8071216617210683, 0.8011869436201781, 0.8011869436201781, 0.05341246290801187, 0.05341246290801187, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05934718100890208, 0.9495548961424333, 0.05934718100890208, 0.0771513353115727, 0.1394658753709199, 0.08902077151335312, 0.9050445103857567, 0.9198813056379822, 0.8397626112759644, 0.6261127596439169, 0.05934718100890208, 0.05934718100890208, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.05637982195845697, 0.06824925816023739, 0.07418397626112759, 0.08605341246290801, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.08605341246290801, 0.08605341246290801, 0.08605341246290801, 0.08605341246290801, 0.08605341246290801, 0.08605341246290801, 0.08605341246290801, 0.09198813056379822, 0.09198813056379822, 0.09792284866468842, 0.09792284866468842, 0.09792284866468842, 0.11572700296735905, 0.11869436201780416, 0.11275964391691394, 0.11275964391691394, 0.12759643916913946, 0.3887240356083086, 0.3649851632047478, 0.21364985163204747, 0.17804154302670624, 0.17210682492581603, 0.19287833827893175, 0.28486646884273, 0.37388724035608306, 0.4362017804154303, 0.4362017804154303, 0.4391691394658754, 0.6083086053412463, 0.6795252225519288, 0.7032640949554896, 0.7329376854599406, 0.7359050445103857, 0.8783382789317508, 0.887240356083086, 0.9020771513353115, 0.9169139465875371, 0.9376854599406528, 0.9228486646884273, 0.9080118694362018, 0.8991097922848664, 0.884272997032641, 0.8694362017804155, 0.29673590504451036, 0.29673590504451036, 0.28486646884273, 0.2403560830860534, 0.20178041543026706, 0.19881305637982197, 0.19881305637982197, 0.19881305637982197, 0.19584569732937684, 0.19881305637982197, 0.20474777448071216, 0.20474777448071216, 0.21364985163204747, 0.2166172106824926, 0.22551928783382788, 0.22551928783382788, 0.2344213649851632, 0.24925816023738873, 0.26409495548961426, 0.32047477744807124, 0.6706231454005934], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Smr.gap.json b/pfam_gap_rates/Smr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..364a6fc135d58b82edea2410c0989ebbb6b42288
--- /dev/null
+++ b/pfam_gap_rates/Smr.gap.json
@@ -0,0 +1 @@
+{"family": "Smr", "n_seqs": 2486, "length": 96, "gap_rates": [0.12268704746580852, 0.083266291230893, 0.05752212389380531, 0.053901850362027354, 0.0502815768302494, 0.04746580852775543, 0.04585679806918745, 0.04424778761061947, 0.042236524537409496, 0.0418342719227675, 0.041432019308125505, 0.03459372485921158, 0.025341914722445697, 0.015687851971037812, 0.012067578439259855, 0.007240547063555913, 0.006838294448913918, 0.006436041834271922, 0.0056315366049879325, 0.005229283990345938, 0.003218020917135961, 0.9316170555108608, 0.9364440868865648, 0.9493161705551086, 0.9444891391794047, 0.9336283185840708, 0.9296057924376508, 0.008045052292839904, 0.02413515687851971, 0.02252614641995173, 0.027353177795655673, 0.07079646017699115, 0.018101367658889783, 0.008045052292839904, 0.0016090104585679806, 0.0008045052292839903, 0.00040225261464199515, 0.00040225261464199515, 0.00040225261464199515, 0.00040225261464199515, 0.00040225261464199515, 0.00040225261464199515, 0.0012067578439259854, 0.0012067578439259854, 0.5112630732099759, 0.5160901045856798, 0.5096540627514079, 0.5410297666934835, 0.8982300884955752, 0.9388576025744167, 0.9489139179404666, 0.9420756234915527, 0.916733708769107, 0.6327433628318584, 0.5225261464199518, 0.004424778761061947, 0.004424778761061947, 0.003218020917135961, 0.0036202735317779565, 0.004022526146419952, 0.004424778761061947, 0.004827031375703942, 0.004827031375703942, 0.005229283990345938, 0.006033789219629927, 0.008447304907481898, 0.01005631536604988, 0.016894609814963796, 0.03781174577634755, 0.8636363636363636, 0.8982300884955752, 0.8535800482703138, 0.12268704746580852, 0.1419951729686243, 0.15526950925181013, 0.18020917135961384, 0.2574416733708769, 0.250201126307321, 0.25583266291230894, 0.26790024135156876, 0.2594529364440869, 0.24497184231697505, 0.23652453740949317, 0.23209975864843121, 0.2333065164923572, 0.22003218020917137, 0.21842316975060339, 0.21440064360418343, 0.21520514883346742, 0.22244569589702334, 0.2248592115848753, 0.22968624296057924, 0.23773129525341916, 0.26226870474658087, 0.31938857602574416, 0.5442477876106194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Snf7.gap.json b/pfam_gap_rates/Snf7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f87a057f78639e5c5d025d620af80b745dbb87f
--- /dev/null
+++ b/pfam_gap_rates/Snf7.gap.json
@@ -0,0 +1 @@
+{"family": "Snf7", "n_seqs": 2643, "length": 196, "gap_rates": [0.8301172909572455, 0.489216799091941, 0.3813847900113507, 0.310253499810821, 0.21793416572077184, 0.15664018161180476, 0.14642451759364358, 0.13961407491486946, 0.12939841089670828, 0.11993946273174423, 0.11464245175936436, 0.10594021944759743, 0.10177828225501324, 0.09345440786984488, 0.09156261823685206, 0.09042754445705638, 0.08929247067726069, 0.08702232311766932, 0.08286038592508513, 0.08059023836549375, 0.07945516458569807, 0.07983352251229663, 0.07869844873250094, 0.07869844873250094, 0.07832009080590238, 0.07756337495270525, 0.16269390843738177, 0.07567158531971245, 0.07491486946651532, 0.0711312902005297, 0.06999621642073402, 0.07037457434733257, 0.07075293227393113, 0.06886114264093833, 0.06848278471433976, 0.06696935300794551, 0.06583427922814983, 0.0650775633749527, 0.061672342035565646, 0.8339008702232312, 0.8410896708286039, 0.8448732500945895, 0.8494135452137722, 0.8732500945894817, 0.8834657586076429, 0.8513053348467651, 0.8463866818009838, 0.8429814604615967, 0.8380628074158154, 0.8301172909572455, 0.06129398410896708, 0.05902383654937571, 0.056753688989784334, 0.05524025728339009, 0.05259175179720015, 0.05221339387060159, 0.049943246311010214, 0.05032160423760878, 0.04956488838441166, 0.04918653045781309, 0.04842981460461597, 0.04918653045781309, 0.04918653045781309, 0.04956488838441166, 0.04842981460461597, 0.04880817253121453, 0.04956488838441166, 0.04918653045781309, 0.04918653045781309, 0.04842981460461597, 0.04729474082482028, 0.046538024971623154, 0.04578130911842603, 0.04502459326522891, 0.04502459326522891, 0.04502459326522891, 0.04388951948543322, 0.04275444570563754, 0.04237608777903897, 0.04275444570563754, 0.04275444570563754, 0.04275444570563754, 0.04388951948543322, 0.04199772985244041, 0.04199772985244041, 0.04351116155883466, 0.04502459326522891, 0.044646235338630345, 0.04388951948543322, 0.04237608777903897, 0.041241013999243285, 0.041241013999243285, 0.04086265607264472, 0.04199772985244041, 0.04086265607264472, 0.04086265607264472, 0.04237608777903897, 0.04161937192584184, 0.04275444570563754, 0.04351116155883466, 0.04275444570563754, 0.04199772985244041, 0.04351116155883466, 0.04351116155883466, 0.04161937192584184, 0.041241013999243285, 0.04086265607264472, 0.04540295119182747, 0.04880817253121453, 0.044646235338630345, 0.04351116155883466, 0.043132803632236094, 0.04578130911842603, 0.058267120696178586, 0.05599697313658721, 0.04918653045781309, 0.04880817253121453, 0.04880817253121453, 0.04691638289822172, 0.04691638289822172, 0.04540295119182747, 0.04502459326522891, 0.04540295119182747, 0.04426787741203178, 0.04578130911842603, 0.04502459326522891, 0.04578130911842603, 0.04540295119182747, 0.0461596670450246, 0.04767309875141884, 0.049943246311010214, 0.05069996216420734, 0.05297010972379872, 0.0541051835035944, 0.053348467650397274, 0.05372682557699584, 0.05448354143019296, 0.05448354143019296, 0.05448354143019296, 0.05561861520998865, 0.05637533106318578, 0.05902383654937571, 0.22814982973893302, 0.23269012485811577, 0.29625425652667425, 0.6632614453272796, 0.583427922814983, 0.08550889141127507, 0.07340143776012108, 0.06923950056753689, 0.06659099508134696, 0.06734771093454407, 0.06848278471433976, 0.0681044267877412, 0.0681044267877412, 0.06923950056753689, 0.07037457434733257, 0.07188800605372682, 0.07226636398032539, 0.07340143776012108, 0.07567158531971245, 0.07794173287930382, 0.08059023836549375, 0.08550889141127507, 0.08967082860385925, 0.12031782065834279, 0.11804767309875142, 0.1191827468785471, 0.13469542186908814, 0.14037079076806658, 0.5115399167612561, 0.5285660234581915, 0.6999621642073401, 0.8085508891411275, 0.8687097994702989, 0.9016269390843739, 0.9424895951570186, 0.9493000378357926, 0.9330306469920545, 0.8842224744608399, 0.8471433976541809, 0.7309875141884222, 0.6799091940976163, 0.5452137722285282, 0.5822928490351873, 0.2973893303064699, 0.2924706772606886, 0.28603859250851305, 0.29284903518728717, 0.30419977298524403, 0.33749527052591755, 0.38819523269012485, 0.4248959515701854, 0.49224366250472945, 0.5902383654937571, 0.7529322739311388], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spo0A_C.gap.json b/pfam_gap_rates/Spo0A_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6af46982afd7d49d44a9ed9a3dba835f5d5e5d5
--- /dev/null
+++ b/pfam_gap_rates/Spo0A_C.gap.json
@@ -0,0 +1 @@
+{"family": "Spo0A_C", "n_seqs": 590, "length": 104, "gap_rates": [0.15593220338983052, 0.12033898305084746, 0.06271186440677966, 0.04406779661016949, 0.0423728813559322, 0.04067796610169491, 0.04067796610169491, 0.04067796610169491, 0.04067796610169491, 0.03898305084745763, 0.03728813559322034, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03559322033898305, 0.03389830508474576, 0.03389830508474576, 0.03220338983050847, 0.03220338983050847, 0.03220338983050847, 0.03220338983050847, 0.03220338983050847, 0.07288135593220339, 0.05593220338983051, 0.04576271186440678, 0.03898305084745763, 0.03220338983050847, 0.022033898305084745, 0.00847457627118644, 0.003389830508474576, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001694915254237288, 0.001694915254237288, 0.003389830508474576, 0.003389830508474576, 0.005084745762711864, 0.005084745762711864, 0.005084745762711864, 0.005084745762711864, 0.005084745762711864, 0.005084745762711864, 0.005084745762711864, 0.005084745762711864, 0.005084745762711864, 0.005084745762711864, 0.005084745762711864, 0.006779661016949152, 0.006779661016949152, 0.005084745762711864, 0.01864406779661017, 0.013559322033898305, 0.03559322033898305, 0.023728813559322035, 0.025423728813559324, 0.022033898305084745, 0.010169491525423728, 0.00847457627118644, 0.010169491525423728, 0.00847457627118644, 0.00847457627118644, 0.04915254237288136, 0.03898305084745763, 0.03728813559322034, 0.03559322033898305, 0.03559322033898305, 0.12203389830508475, 0.09661016949152543, 0.0847457627118644, 0.020338983050847456, 0.01694915254237288, 0.015254237288135594, 0.015254237288135594, 0.015254237288135594, 0.015254237288135594, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.022033898305084745, 0.022033898305084745, 0.025423728813559324, 0.04067796610169491, 0.07796610169491526, 0.15084745762711865], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoIIIAC.gap.json b/pfam_gap_rates/SpoIIIAC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5d98168e90436e7631764934e51a974dadf3b0d
--- /dev/null
+++ b/pfam_gap_rates/SpoIIIAC.gap.json
@@ -0,0 +1 @@
+{"family": "SpoIIIAC", "n_seqs": 1010, "length": 56, "gap_rates": [0.07227722772277227, 0.033663366336633666, 0.02277227722772277, 0.01782178217821782, 0.011881188118811881, 0.009900990099009901, 0.009900990099009901, 0.00891089108910891, 0.0049504950495049506, 0.0049504950495049506, 0.0039603960396039604, 0.0039603960396039604, 0.0029702970297029703, 0.0029702970297029703, 0.0019801980198019802, 0.0019801980198019802, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0009900990099009901, 0.29504950495049503, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0019801980198019802, 0.0029702970297029703, 0.0029702970297029703, 0.0029702970297029703, 0.0029702970297029703, 0.0029702970297029703, 0.0029702970297029703, 0.005940594059405941, 0.006930693069306931, 0.006930693069306931, 0.01089108910891089, 0.016831683168316833, 0.028712871287128714, 0.040594059405940595, 0.0594059405940594, 0.13267326732673268, 0.42475247524752474], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_IV_A.gap.json b/pfam_gap_rates/Spore_IV_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f37258144523b8fa168d0a41e25e150ce9f9ed15
--- /dev/null
+++ b/pfam_gap_rates/Spore_IV_A.gap.json
@@ -0,0 +1 @@
+{"family": "Spore_IV_A", "n_seqs": 414, "length": 493, "gap_rates": [0.28743961352657005, 0.23671497584541062, 0.15942028985507245, 0.10386473429951691, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.0748792270531401, 0.07004830917874397, 0.07004830917874397, 0.07004830917874397, 0.07246376811594203, 0.07004830917874397, 0.07004830917874397, 0.07004830917874397, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Srg.gap.json b/pfam_gap_rates/Srg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb82742b326f00c0423208a9c56e05102b04dc46
--- /dev/null
+++ b/pfam_gap_rates/Srg.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sterol_MT_C.gap.json b/pfam_gap_rates/Sterol_MT_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f08fe6b9f1ea200cffd1f1e97fbe2cc86b4672f3
--- /dev/null
+++ b/pfam_gap_rates/Sterol_MT_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sugar_transport.gap.json b/pfam_gap_rates/Sugar_transport.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8f411b8e4fe3b7ae58e1b8f1e9ab0b9d7b529e6
--- /dev/null
+++ b/pfam_gap_rates/Sugar_transport.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SurA_N_2.gap.json b/pfam_gap_rates/SurA_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc39084f96181d79f8b0e6b0360704718d35c345
--- /dev/null
+++ b/pfam_gap_rates/SurA_N_2.gap.json
@@ -0,0 +1 @@
+{"family": "SurA_N_2", "n_seqs": 302, "length": 159, "gap_rates": [0.347682119205298, 0.26158940397350994, 0.24503311258278146, 0.23841059602649006, 0.22847682119205298, 0.22185430463576158, 0.2052980132450331, 0.2052980132450331, 0.1986754966887417, 0.6158940397350994, 0.17880794701986755, 0.15894039735099338, 0.152317880794702, 0.13245033112582782, 0.12582781456953643, 0.7682119205298014, 0.10927152317880795, 0.10927152317880795, 0.10596026490066225, 0.10264900662251655, 0.09271523178807947, 0.09602649006622517, 0.09271523178807947, 0.08609271523178808, 0.08609271523178808, 0.9105960264900662, 0.40728476821192056, 0.40066225165562913, 0.3841059602649007, 0.1291390728476821, 0.09602649006622517, 0.08609271523178808, 0.09602649006622517, 0.08940397350993377, 0.08609271523178808, 0.08940397350993377, 0.9403973509933775, 0.1986754966887417, 0.1490066225165563, 0.13245033112582782, 0.08940397350993377, 0.8841059602649006, 0.039735099337748346, 0.023178807947019868, 0.019867549668874173, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.013245033112582781, 0.013245033112582781, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.12251655629139073, 0.18874172185430463, 0.18211920529801323, 0.16887417218543047, 0.16887417218543047, 0.22847682119205298, 0.08609271523178808, 0.0728476821192053, 0.09933774834437085, 0.31788079470198677, 0.152317880794702, 0.12251655629139073, 0.304635761589404, 0.28807947019867547, 0.23841059602649006, 0.31125827814569534, 0.26490066225165565, 0.9403973509933775, 0.9470198675496688, 0.9337748344370861, 0.026490066225165563, 0.016556291390728478, 0.013245033112582781, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.006622516556291391, 0.006622516556291391, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.009933774834437087, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.016556291390728478, 0.013245033112582781, 0.013245033112582781, 0.019867549668874173, 0.026490066225165563, 0.026490066225165563, 0.033112582781456956, 0.029801324503311258, 0.033112582781456956, 0.046357615894039736, 0.04966887417218543, 0.052980132450331126, 0.45364238410596025, 0.8940397350993378, 0.6324503311258278, 0.40066225165562913, 0.0728476821192053, 0.09933774834437085, 0.09271523178807947, 0.38741721854304634, 0.38741721854304634, 0.39403973509933776, 0.40066225165562913, 0.7913907284768212, 0.6589403973509934, 0.1390728476821192, 0.1456953642384106, 0.6456953642384106, 0.4304635761589404, 0.18543046357615894, 0.19536423841059603, 0.19536423841059603, 0.1986754966887417, 0.20198675496688742, 0.20198675496688742, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2119205298013245, 0.2251655629139073, 0.24503311258278146, 0.304635761589404, 0.47019867549668876], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sushi.gap.json b/pfam_gap_rates/Sushi.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..971b014c91c6fcf6b2a402b31b639c440d477197
--- /dev/null
+++ b/pfam_gap_rates/Sushi.gap.json
@@ -0,0 +1 @@
+{"family": "Sushi", "n_seqs": 5000, "length": 68, "gap_rates": [0.2192, 0.2144, 0.2062, 0.1952, 0.1946, 0.2412, 0.1504, 0.1396, 0.1324, 0.1298, 0.8576, 0.1596, 0.1384, 0.1158, 0.1738, 0.3944, 0.4706, 0.873, 0.9182, 0.8022, 0.0608, 0.0506, 0.0418, 0.0302, 0.0226, 0.0146, 0.0128, 0.0076, 0.0032, 0.0018, 0.0006, 0.0004, 0.0004, 0.0006, 0.0004, 0.0004, 0.003, 0.0032, 0.0018, 0.9094, 0.0076, 0.016, 0.0106, 0.9006, 0.9476, 0.829, 0.0032, 0.003, 0.0024, 0.0024, 0.0024, 0.1028, 0.0082, 0.875, 0.939, 0.9102, 0.8706, 0.0106, 0.013, 0.043, 0.0154, 0.0176, 0.0262, 0.039, 0.174, 0.1198, 0.1268, 0.126], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Svf1.gap.json b/pfam_gap_rates/Svf1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f9d37246cf9c40fc89cee70df0dfd081b9a5e2f
--- /dev/null
+++ b/pfam_gap_rates/Svf1.gap.json
@@ -0,0 +1 @@
+{"family": "Svf1", "n_seqs": 149, "length": 203, "gap_rates": [0.10067114093959731, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.06711409395973154, 0.8389261744966443, 0.06711409395973154, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.053691275167785234, 0.06040268456375839, 0.053691275167785234, 0.35570469798657717, 0.040268456375838924, 0.697986577181208, 0.040268456375838924, 0.040268456375838924, 0.040268456375838924, 0.040268456375838924, 0.040268456375838924, 0.040268456375838924, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.03355704697986577, 0.03355704697986577, 0.03355704697986577, 0.697986577181208, 0.1476510067114094, 0.12751677852348994, 0.3221476510067114, 0.9395973154362416, 0.03355704697986577, 0.03355704697986577, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.026845637583892617, 0.026845637583892617, 0.21476510067114093, 0.7785234899328859, 0.9463087248322147, 0.9463087248322147, 0.9463087248322147, 0.9463087248322147, 0.7919463087248322, 0.7651006711409396, 0.18791946308724833, 0.03355704697986577, 0.03355704697986577, 0.026845637583892617, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.026845637583892617, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.6577181208053692, 0.7718120805369127, 0.8791946308724832, 0.825503355704698, 0.7516778523489933, 0.0738255033557047, 0.040268456375838924, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.026845637583892617, 0.026845637583892617, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.04697986577181208, 0.040268456375838924, 0.020134228187919462, 0.013422818791946308, 0.020134228187919462, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.04697986577181208, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.7651006711409396, 0.7516778523489933, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.11409395973154363, 0.7785234899328859, 0.7785234899328859, 0.7785234899328859, 0.026845637583892617, 0.03355704697986577, 0.03355704697986577, 0.026845637583892617, 0.020134228187919462, 0.020134228187919462, 0.9261744966442953, 0.9261744966442953, 0.9328859060402684, 0.9395973154362416, 0.9395973154362416, 0.9463087248322147, 0.9463087248322147, 0.9395973154362416, 0.9328859060402684, 0.9328859060402684, 0.9261744966442953, 0.9194630872483222, 0.020134228187919462, 0.040268456375838924, 0.053691275167785234, 0.04697986577181208, 0.03355704697986577, 0.026845637583892617, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.87248322147651, 0.9328859060402684, 0.9328859060402684, 0.9463087248322147, 0.9463087248322147, 0.9463087248322147, 0.9328859060402684, 0.9328859060402684, 0.825503355704698, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.020134228187919462, 0.020134228187919462, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.2214765100671141, 0.6174496644295302, 0.03355704697986577, 0.03355704697986577, 0.03355704697986577, 0.03355704697986577, 0.040268456375838924, 0.040268456375838924, 0.040268456375838924, 0.053691275167785234], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Synapsin_C.gap.json b/pfam_gap_rates/Synapsin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90c75d8f23486ebef0c327dbcc22d8ffd4022a62
--- /dev/null
+++ b/pfam_gap_rates/Synapsin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Synapsin_C", "n_seqs": 173, "length": 203, "gap_rates": [0.44508670520231214, 0.44508670520231214, 0.4161849710982659, 0.4046242774566474, 0.4046242774566474, 0.4046242774566474, 0.4046242774566474, 0.4046242774566474, 0.4046242774566474, 0.3988439306358382, 0.3988439306358382, 0.3930635838150289, 0.3930635838150289, 0.3930635838150289, 0.3930635838150289, 0.3872832369942196, 0.3872832369942196, 0.3872832369942196, 0.3815028901734104, 0.3815028901734104, 0.3872832369942196, 0.3988439306358382, 0.3930635838150289, 0.3872832369942196, 0.3872832369942196, 0.3988439306358382, 0.3930635838150289, 0.3872832369942196, 0.3930635838150289, 0.3815028901734104, 0.3815028901734104, 0.3815028901734104, 0.3815028901734104, 0.37572254335260113, 0.3699421965317919, 0.36416184971098264, 0.36416184971098264, 0.3583815028901734, 0.3468208092485549, 0.3468208092485549, 0.34104046242774566, 0.34104046242774566, 0.3352601156069364, 0.32947976878612717, 0.30057803468208094, 0.2658959537572254, 0.28901734104046245, 0.3179190751445087, 0.32947976878612717, 0.3352601156069364, 0.32947976878612717, 0.3352601156069364, 0.3468208092485549, 0.35260115606936415, 0.35260115606936415, 0.35260115606936415, 0.35260115606936415, 0.35260115606936415, 0.3468208092485549, 0.3468208092485549, 0.35260115606936415, 0.35260115606936415, 0.35260115606936415, 0.34104046242774566, 0.32947976878612717, 0.3179190751445087, 0.2947976878612717, 0.2947976878612717, 0.30057803468208094, 0.30057803468208094, 0.30057803468208094, 0.3063583815028902, 0.3063583815028902, 0.3063583815028902, 0.3063583815028902, 0.30057803468208094, 0.3063583815028902, 0.3063583815028902, 0.30057803468208094, 0.30057803468208094, 0.3063583815028902, 0.3063583815028902, 0.31213872832369943, 0.31213872832369943, 0.3063583815028902, 0.31213872832369943, 0.3179190751445087, 0.3179190751445087, 0.31213872832369943, 0.31213872832369943, 0.31213872832369943, 0.3179190751445087, 0.31213872832369943, 0.31213872832369943, 0.31213872832369943, 0.3063583815028902, 0.30057803468208094, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.28901734104046245, 0.28901734104046245, 0.28901734104046245, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.28901734104046245, 0.28901734104046245, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2774566473988439, 0.2774566473988439, 0.27167630057803466, 0.2774566473988439, 0.2832369942196532, 0.32947976878612717, 0.3468208092485549, 0.3063583815028902, 0.2947976878612717, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.28901734104046245, 0.2774566473988439, 0.2774566473988439, 0.2774566473988439, 0.2774566473988439, 0.27167630057803466, 0.2774566473988439, 0.2774566473988439, 0.2774566473988439, 0.2774566473988439, 0.2774566473988439, 0.27167630057803466, 0.27167630057803466, 0.2774566473988439, 0.2832369942196532, 0.2832369942196532, 0.28901734104046245, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.28901734104046245, 0.2947976878612717, 0.2947976878612717, 0.3179190751445087, 0.3063583815028902, 0.2947976878612717, 0.30057803468208094, 0.3063583815028902, 0.3063583815028902, 0.3063583815028902, 0.3063583815028902, 0.3063583815028902, 0.30057803468208094, 0.30057803468208094, 0.30057803468208094, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2774566473988439, 0.2774566473988439, 0.27167630057803466, 0.27167630057803466, 0.2774566473988439, 0.28901734104046245, 0.37572254335260113, 0.28901734104046245, 0.2947976878612717, 0.3063583815028902, 0.30057803468208094, 0.30057803468208094, 0.3063583815028902, 0.3063583815028902, 0.30057803468208094, 0.30057803468208094, 0.30057803468208094, 0.3063583815028902, 0.3063583815028902, 0.3063583815028902, 0.3063583815028902, 0.31213872832369943, 0.31213872832369943, 0.3179190751445087, 0.3179190751445087, 0.3352601156069364, 0.34104046242774566, 0.34104046242774566, 0.35260115606936415, 0.3699421965317919, 0.4624277456647399, 0.7398843930635838], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Syntaxin_2.gap.json b/pfam_gap_rates/Syntaxin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..436b68bc8c16f9f2db5d0461e63f12cb358824d8
--- /dev/null
+++ b/pfam_gap_rates/Syntaxin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Syntaxin_2", "n_seqs": 428, "length": 107, "gap_rates": [0.5654205607476636, 0.22897196261682243, 0.14953271028037382, 0.12149532710280374, 0.09345794392523364, 0.0911214953271028, 0.08644859813084112, 0.08411214953271028, 0.07710280373831775, 0.07476635514018691, 0.07009345794392523, 0.07009345794392523, 0.06074766355140187, 0.0514018691588785, 0.04439252336448598, 0.0397196261682243, 0.0397196261682243, 0.037383177570093455, 0.037383177570093455, 0.035046728971962614, 0.035046728971962614, 0.035046728971962614, 0.035046728971962614, 0.035046728971962614, 0.035046728971962614, 0.0397196261682243, 0.03271028037383177, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.030373831775700934, 0.030373831775700934, 0.028037383177570093, 0.028037383177570093, 0.030373831775700934, 0.02336448598130841, 0.02102803738317757, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.011682242990654205, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.037383177570093455, 0.037383177570093455, 0.0397196261682243, 0.0397196261682243, 0.037383177570093455, 0.04439252336448598, 0.04439252336448598, 0.04906542056074766, 0.056074766355140186, 0.07009345794392523, 0.12149532710280374, 0.34579439252336447, 0.42990654205607476, 0.7850467289719626, 0.9205607476635514, 0.9369158878504673, 0.9322429906542056, 0.8200934579439252, 0.544392523364486, 0.09345794392523364, 0.07242990654205607, 0.06542056074766354, 0.06542056074766354, 0.0514018691588785, 0.0514018691588785, 0.04906542056074766, 0.04906542056074766, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04906542056074766, 0.04906542056074766, 0.04906542056074766, 0.04906542056074766, 0.0514018691588785, 0.053738317757009345, 0.053738317757009345, 0.053738317757009345, 0.053738317757009345, 0.053738317757009345, 0.053738317757009345, 0.053738317757009345, 0.053738317757009345, 0.053738317757009345, 0.056074766355140186, 0.05841121495327103, 0.06542056074766354, 0.07710280373831775, 0.0794392523364486, 0.09345794392523364, 0.11214953271028037, 0.13551401869158877, 0.29205607476635514, 0.8621495327102804], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T2SSB.gap.json b/pfam_gap_rates/T2SSB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e66c2a3cad3715e20fb5c7e7003a07d69d5cc2d1
--- /dev/null
+++ b/pfam_gap_rates/T2SSB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/T2SSK.gap.json b/pfam_gap_rates/T2SSK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3038ae838f3bd3c5a14b84ce634a7d00580b3259
--- /dev/null
+++ b/pfam_gap_rates/T2SSK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/T4SS-DNA_transf.gap.json b/pfam_gap_rates/T4SS-DNA_transf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b58ba0f4a783f4c9e8cec413d56c2aeed96787e
--- /dev/null
+++ b/pfam_gap_rates/T4SS-DNA_transf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/T4_deiodinase.gap.json b/pfam_gap_rates/T4_deiodinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55e0a92780b94963df4f63f6c1f27af31d1256af
--- /dev/null
+++ b/pfam_gap_rates/T4_deiodinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/T5orf172.gap.json b/pfam_gap_rates/T5orf172.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ddb17f5f0f3dc6bc4032634d8716a7a505ef1310
--- /dev/null
+++ b/pfam_gap_rates/T5orf172.gap.json
@@ -0,0 +1 @@
+{"family": "T5orf172", "n_seqs": 1121, "length": 118, "gap_rates": [0.15967885816235505, 0.10972346119536129, 0.07850133809099019, 0.06422836752899197, 0.06333630686886708, 0.060660124888492414, 0.09188224799286351, 0.07939339875111508, 0.06512042818911686, 0.04906333630686887, 0.039250669045495096, 0.03300624442462088, 0.03746654772524532, 0.03389830508474576, 0.9259589652096343, 0.936663693131133, 0.9330954504906334, 0.9152542372881356, 0.7939339875111507, 0.17573595004460305, 0.1873327386262266, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.9081177520071365, 0.7404103479036575, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.003568242640499554, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.0026761819803746653, 0.7707404103479036, 0.9455842997323818, 0.9482604817127565, 0.9420160570918823, 0.7867975022301517, 0.6904549509366636, 0.6190900981266726, 0.6101694915254238, 0.6048171275646744, 0.6012488849241748, 0.06422836752899197, 0.036574487065120426, 0.03746654772524532, 0.10437109723461195, 0.22033898305084745, 0.703835860838537, 0.7332738626226584, 0.7618198037466548, 0.6636931311329171, 0.5985727029438002, 0.4576271186440678, 0.04817127564674398, 0.05798394290811775, 0.042818911685994644, 0.09009812667261374, 0.010704727921498661, 0.009812667261373774, 0.009812667261373774, 0.008920606601248885, 0.008920606601248885, 0.008028545941123996, 0.008028545941123996, 0.008028545941123996, 0.008920606601248885, 0.008920606601248885, 0.009812667261373774, 0.008920606601248885, 0.010704727921498661, 0.013380909901873328, 0.021409455842997322, 0.47546833184656556, 0.22390722569134702, 0.18911685994647637, 0.06244424620874219, 0.06333630686886708, 0.06512042818911686, 0.44424620874219445, 0.7297056199821588, 0.7430865298840321, 0.7297056199821588, 0.7636039250669046, 0.7930419268510259, 0.8858162355040142, 0.9027653880463872, 0.8911685994647636, 0.8251561106155219, 0.423728813559322, 0.06779661016949153, 0.06601248884924175, 0.06690454950936664, 0.06779661016949153, 0.06868867082961641, 0.07225691347011597, 0.0767172167707404, 0.08028545941123996, 0.7930419268510259, 0.4567350579839429, 0.5236396074933095, 0.23907225691347012, 0.24620874219446923, 0.25156110615521854, 0.26137377341659235, 0.26851025869759143, 0.29794826048171275, 0.35325602140945583, 0.7609277430865299, 0.8233719892952721, 0.9420160570918823], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T7SS_ESX1_EccB.gap.json b/pfam_gap_rates/T7SS_ESX1_EccB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e659ce1f63c94a3fe5b11f860a49c75c2363a43
--- /dev/null
+++ b/pfam_gap_rates/T7SS_ESX1_EccB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TAFII28.gap.json b/pfam_gap_rates/TAFII28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a577f2db239cf8e262b2d7b266ab0f567b118887
--- /dev/null
+++ b/pfam_gap_rates/TAFII28.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TAL_FSA.gap.json b/pfam_gap_rates/TAL_FSA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18438f9f484eb146f541a72a5473d226f113f389
--- /dev/null
+++ b/pfam_gap_rates/TAL_FSA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TAXi_N.gap.json b/pfam_gap_rates/TAXi_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f2276f61e3d16916fa7e6c402f0a8f6b3589f12
--- /dev/null
+++ b/pfam_gap_rates/TAXi_N.gap.json
@@ -0,0 +1 @@
+{"family": "TAXi_N", "n_seqs": 1988, "length": 214, "gap_rates": [0.3073440643863179, 0.24849094567404426, 0.18762575452716299, 0.1659959758551308, 0.1529175050301811, 0.15090543259557343, 0.14839034205231388, 0.14688128772635814, 0.14134808853118713, 0.14185110663983905, 0.15643863179074446, 0.14637826961770622, 0.1317907444668008, 0.12826961770623743, 0.11971830985915492, 0.1011066398390342, 0.09909456740442656, 0.0960764587525151, 0.09557344064386318, 0.09557344064386318, 0.09557344064386318, 0.09557344064386318, 0.0925553319919517, 0.09154929577464789, 0.09154929577464789, 0.09104627766599598, 0.08903420523138833, 0.08702213279678069, 0.08601609657947686, 0.22183098591549297, 0.20975855130784707, 0.20925553319919518, 0.2062374245472837, 0.2681086519114688, 0.778169014084507, 0.8370221327967807, 0.891851106639839, 0.9185110663983903, 0.9039235412474849, 0.8495975855130785, 0.8209255533199196, 0.7142857142857143, 0.25855130784708247, 0.21327967806841047, 0.18561368209255533, 0.18008048289738432, 0.17354124748490946, 0.1664989939637827, 0.15694164989939638, 0.1493963782696177, 0.09808853118712274, 0.09104627766599598, 0.08953722334004025, 0.08249496981891348, 0.08098591549295775, 0.07142857142857142, 0.07796780684104627, 0.07193158953722334, 0.07193158953722334, 0.07243460764587525, 0.07243460764587525, 0.07243460764587525, 0.0744466800804829, 0.07494969818913481, 0.0744466800804829, 0.1096579476861167, 0.09557344064386318, 0.08501006036217304, 0.08048289738430583, 0.08048289738430583, 0.7308853118712274, 0.8385311871227364, 0.8817907444668008, 0.9356136820925554, 0.9406438631790744, 0.9275653923541247, 0.8717303822937625, 0.8028169014084507, 0.6715291750503019, 0.5648893360160966, 0.9129778672032193, 0.5070422535211268, 0.40492957746478875, 0.32142857142857145, 0.17555331991951711, 0.14788732394366197, 0.12776659959758552, 0.11619718309859155, 0.09054325955734406, 0.08148893360160966, 0.08450704225352113, 0.08199195171026157, 0.07193158953722334, 0.06891348088531186, 0.06690140845070422, 0.0658953722334004, 0.0658953722334004, 0.06338028169014084, 0.061871227364185113, 0.06287726358148893, 0.06086519114688129, 0.06086519114688129, 0.07344064386317907, 0.937625754527163, 0.8063380281690141, 0.10865191146881288, 0.07243460764587525, 0.16851106639839034, 0.06539235412474849, 0.06086519114688129, 0.059356136820925554, 0.05734406438631791, 0.057847082494969816, 0.056338028169014086, 0.05533199195171026, 0.05482897384305835, 0.053822937625754526, 0.053822937625754526, 0.05533199195171026, 0.05583501006036217, 0.056338028169014086, 0.37877263581488935, 0.38832997987927564, 0.37927565392354123, 0.5075452716297787, 0.3475855130784708, 0.7585513078470825, 0.8792756539235412, 0.9411468812877264, 0.829476861167002, 0.7303822937625755, 0.10261569416498995, 0.07997987927565392, 0.06539235412474849, 0.06237424547283702, 0.05985915492957746, 0.07746478873239436, 0.8209255533199196, 0.06287726358148893, 0.056338028169014086, 0.05583501006036217, 0.05482897384305835, 0.05432595573440644, 0.05583501006036217, 0.056841046277665994, 0.05835010060362173, 0.8470824949698189, 0.8908450704225352, 0.7489939637826962, 0.2560362173038229, 0.1267605633802817, 0.10663983903420524, 0.1011066398390342, 0.08098591549295775, 0.07645875251509054, 0.0789738430583501, 0.10261569416498995, 0.903420523138833, 0.9491951710261569, 0.8702213279678068, 0.12776659959758552, 0.9074446680080482, 0.06841046277665996, 0.06086519114688129, 0.059356136820925554, 0.05885311871227364, 0.05835010060362173, 0.060362173038229376, 0.05985915492957746, 0.05985915492957746, 0.05985915492957746, 0.0613682092555332, 0.06438631790744467, 0.06690140845070422, 0.06690140845070422, 0.06690140845070422, 0.06790744466800805, 0.06891348088531186, 0.06941649899396378, 0.07142857142857142, 0.07243460764587525, 0.23038229376257546, 0.23742454728370221, 0.5925553319919518, 0.9351106639839034, 0.5633802816901409, 0.26911468812877265, 0.1312877263581489, 0.11720321931589538, 0.08249496981891348, 0.08098591549295775, 0.08098591549295775, 0.08098591549295775, 0.08249496981891348, 0.08350100603621731, 0.8103621730382293, 0.9416498993963782, 0.9134808853118712, 0.7117706237424547, 0.5598591549295775, 0.369215291750503, 0.26961770623742454, 0.14989939637826963, 0.1141851106639839, 0.1141851106639839, 0.11519114688128773, 0.1141851106639839, 0.11820925553319919, 0.12474849094567404, 0.13229376257545272, 0.13782696177062373, 0.14738430583501005, 0.16951710261569417, 0.5216297786720322], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIID_20kDa.gap.json b/pfam_gap_rates/TFIID_20kDa.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f74df03d759df063f6fe883ea5eb49766a529ce4
--- /dev/null
+++ b/pfam_gap_rates/TFIID_20kDa.gap.json
@@ -0,0 +1 @@
+{"family": "TFIID_20kDa", "n_seqs": 357, "length": 75, "gap_rates": [0.4649859943977591, 0.24089635854341737, 0.13725490196078433, 0.0896358543417367, 0.06442577030812324, 0.056022408963585436, 0.056022408963585436, 0.05322128851540616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.058823529411764705, 0.7675070028011205, 0.8095238095238095, 0.8851540616246498, 0.8935574229691877, 0.8123249299719888, 0.7759103641456583, 0.7675070028011205, 0.04481792717086835, 0.03361344537815126, 0.025210084033613446, 0.025210084033613446, 0.022408963585434174, 0.01680672268907563, 0.01680672268907563, 0.011204481792717087, 0.011204481792717087, 0.011204481792717087, 0.011204481792717087, 0.008403361344537815, 0.008403361344537815, 0.0056022408963585435, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0, 0.0, 0.0056022408963585435, 0.011204481792717087, 0.011204481792717087, 0.011204481792717087, 0.011204481792717087, 0.011204481792717087, 0.014005602240896359, 0.014005602240896359, 0.014005602240896359, 0.014005602240896359, 0.01680672268907563, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.04201680672268908, 0.05322128851540616, 0.06442577030812324, 0.07563025210084033, 0.10364145658263306, 0.19887955182072828], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIS_C.gap.json b/pfam_gap_rates/TFIIS_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b7bc0e72f8d467b093a5807587b0a3df79a67c8
--- /dev/null
+++ b/pfam_gap_rates/TFIIS_C.gap.json
@@ -0,0 +1 @@
+{"family": "TFIIS_C", "n_seqs": 1390, "length": 43, "gap_rates": [0.6553956834532374, 0.05251798561151079, 0.011510791366906475, 0.01079136690647482, 0.010071942446043165, 0.9338129496402877, 0.9323741007194245, 0.006474820143884892, 0.0057553956834532375, 0.0057553956834532375, 0.005035971223021582, 0.005035971223021582, 0.004316546762589928, 0.0035971223021582736, 0.004316546762589928, 0.0035971223021582736, 0.01079136690647482, 0.007913669064748202, 0.025179856115107913, 0.0014388489208633094, 0.0028776978417266188, 0.013669064748201438, 0.002158273381294964, 0.0007194244604316547, 0.007913669064748202, 0.008633093525179856, 0.00935251798561151, 0.010071942446043165, 0.01079136690647482, 0.016546762589928057, 0.017985611510791366, 0.02302158273381295, 0.03597122302158273, 0.07553956834532374, 0.839568345323741, 0.839568345323741, 0.04316546762589928, 0.050359712230215826, 0.05251798561151079, 0.07050359712230216, 0.09640287769784173, 0.17410071942446043, 0.3014388489208633], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIS_M.gap.json b/pfam_gap_rates/TFIIS_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c79d1eab01e918ad1047e0e1669f6b13e0afa7f
--- /dev/null
+++ b/pfam_gap_rates/TFIIS_M.gap.json
@@ -0,0 +1 @@
+{"family": "TFIIS_M", "n_seqs": 832, "length": 138, "gap_rates": [0.5973557692307693, 0.3798076923076923, 0.28725961538461536, 0.22235576923076922, 0.203125, 0.1971153846153846, 0.1875, 0.1814903846153846, 0.17668269230769232, 0.16947115384615385, 0.1622596153846154, 0.15745192307692307, 0.15504807692307693, 0.15264423076923078, 0.1502403846153846, 0.14903846153846154, 0.14903846153846154, 0.14903846153846154, 0.1466346153846154, 0.18870192307692307, 0.20432692307692307, 0.4411057692307692, 0.5649038461538461, 0.6033653846153846, 0.7259615384615384, 0.75, 0.8233173076923077, 0.84375, 0.90625, 0.9399038461538461, 0.9447115384615384, 0.9435096153846154, 0.9134615384615384, 0.8617788461538461, 0.8317307692307693, 0.7896634615384616, 0.7391826923076923, 0.6478365384615384, 0.5889423076923077, 0.4891826923076923, 0.28125, 0.16466346153846154, 0.12980769230769232, 0.9026442307692307, 0.9362980769230769, 0.8978365384615384, 0.09254807692307693, 0.08413461538461539, 0.06610576923076923, 0.06129807692307692, 0.057692307692307696, 0.055288461538461536, 0.055288461538461536, 0.046875, 0.04567307692307692, 0.04447115384615385, 0.04326923076923077, 0.040865384615384616, 0.038461538461538464, 0.03485576923076923, 0.036057692307692304, 0.8125, 0.8870192307692307, 0.9387019230769231, 0.9423076923076923, 0.9182692307692307, 0.8557692307692307, 0.7019230769230769, 0.057692307692307696, 0.13221153846153846, 0.10817307692307693, 0.08052884615384616, 0.055288461538461536, 0.052884615384615384, 0.042067307692307696, 0.02403846153846154, 0.018028846153846152, 0.018028846153846152, 0.019230769230769232, 0.016826923076923076, 0.016826923076923076, 0.014423076923076924, 0.013221153846153846, 0.01201923076923077, 0.01201923076923077, 0.01201923076923077, 0.008413461538461538, 0.008413461538461538, 0.027644230769230768, 0.24519230769230768, 0.2283653846153846, 0.016826923076923076, 0.01201923076923077, 0.021634615384615384, 0.01201923076923077, 0.01201923076923077, 0.01201923076923077, 0.01201923076923077, 0.013221153846153846, 0.013221153846153846, 0.013221153846153846, 0.013221153846153846, 0.014423076923076924, 0.014423076923076924, 0.013221153846153846, 0.014423076923076924, 0.016826923076923076, 0.019230769230769232, 0.018028846153846152, 0.019230769230769232, 0.021634615384615384, 0.028846153846153848, 0.037259615384615384, 0.04447115384615385, 0.04807692307692308, 0.052884615384615384, 0.054086538461538464, 0.055288461538461536, 0.0625, 0.06009615384615385, 0.0625, 0.06370192307692307, 0.0673076923076923, 0.07091346153846154, 0.07211538461538461, 0.07211538461538461, 0.07451923076923077, 0.07692307692307693, 0.08052884615384616, 0.09975961538461539, 0.11057692307692307, 0.12139423076923077, 0.14423076923076922, 0.1971153846153846, 0.23317307692307693, 0.2776442307692308, 0.38822115384615385, 0.8329326923076923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TGF_beta_GS.gap.json b/pfam_gap_rates/TGF_beta_GS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9e9c382e837286b2c8ee16f3949d0dcd9646f76
--- /dev/null
+++ b/pfam_gap_rates/TGF_beta_GS.gap.json
@@ -0,0 +1 @@
+{"family": "TGF_beta_GS", "n_seqs": 281, "length": 29, "gap_rates": [0.33451957295373663, 0.24199288256227758, 0.2206405693950178, 0.19572953736654805, 0.17437722419928825, 0.13523131672597866, 0.12455516014234876, 0.30604982206405695, 0.15302491103202848, 0.0498220640569395, 0.028469750889679714, 0.9395017793594306, 0.014234875444839857, 0.014234875444839857, 0.014234875444839857, 0.014234875444839857, 0.014234875444839857, 0.0, 0.0071174377224199285, 0.010676156583629894, 0.010676156583629894, 0.010676156583629894, 0.017793594306049824, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.03914590747330961], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TGS.gap.json b/pfam_gap_rates/TGS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6415c3f5449959895a089744eb6e2b8e4434901
--- /dev/null
+++ b/pfam_gap_rates/TGS.gap.json
@@ -0,0 +1 @@
+{"family": "TGS", "n_seqs": 4935, "length": 75, "gap_rates": [0.27092198581560284, 0.13779128672745694, 0.06788247213779129, 0.04072948328267477, 0.030192502532928066, 0.8409321175278622, 0.026139817629179333, 0.024113475177304965, 0.022087132725430596, 0.020871327254305978, 0.01965552178318136, 0.029381965552178316, 0.022897669706180346, 0.8380952380952381, 0.843161094224924, 0.8522796352583587, 0.8484295845997973, 0.8385005065856129, 0.8342451874366767, 0.010131712259371834, 0.00911854103343465, 0.00851063829787234, 0.008308004052684904, 0.004660587639311043, 0.003850050658561297, 0.8786220871327254, 0.00364741641337386, 0.0026342451874366768, 0.0022289766970618034, 0.0022289766970618034, 0.00182370820668693, 0.002026342451874367, 0.0024316109422492403, 0.0024316109422492403, 0.0012158054711246201, 0.004660587639311043, 0.00425531914893617, 0.0016210739614994933, 0.0016210739614994933, 0.0026342451874366768, 0.00425531914893617, 0.00182370820668693, 0.0014184397163120568, 0.0022289766970618034, 0.0024316109422492403, 0.0028368794326241137, 0.0024316109422492403, 0.00303951367781155, 0.004863221884498481, 0.8154002026342452, 0.8387031408308004, 0.8441742654508612, 0.8536980749746708, 0.8407294832826747, 0.8342451874366767, 0.8109422492401216, 0.007497467071935157, 0.006889564336372847, 0.006889564336372847, 0.007497467071935157, 0.007497467071935157, 0.008308004052684904, 0.008713272543059777, 0.009321175278622086, 0.009726443768996961, 0.011144883485309016, 0.013171225937183385, 0.015197568389057751, 0.01884498480243161, 0.024518743667679838, 0.028166160081053698, 0.032016210739615, 0.038703140830800405, 0.07922998986828773, 0.25045592705167175], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TGT.gap.json b/pfam_gap_rates/TGT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4070972e144845eafd2f2cb08f5c950be0b28e4c
--- /dev/null
+++ b/pfam_gap_rates/TGT.gap.json
@@ -0,0 +1 @@
+{"family": "TGT", "n_seqs": 2774, "length": 270, "gap_rates": [0.6925018024513339, 0.16979091564527757, 0.11824080749819754, 0.09444844989185291, 0.08940158615717375, 0.08471521268925739, 0.08074981975486661, 0.07894736842105263, 0.07678442682047584, 0.07534246575342465, 0.07462148521989906, 0.07426099495313626, 0.07317952415284787, 0.07281903388608507, 0.06993511175198269, 0.0692141312184571, 0.06669069935111752, 0.06596971881759192, 0.06560922855082912, 0.06524873828406633, 0.06416726748377793, 0.06560922855082912, 0.32516222062004324, 0.09228550829127613, 0.06272530641672674, 0.8954578226387887, 0.7062004325883201, 0.059841384282624366, 0.05948089401586157, 0.05948089401586157, 0.05912040374909877, 0.058759913482335974, 0.058399423215573176, 0.058399423215573176, 0.05803893294881038, 0.05767844268204758, 0.05767844268204758, 0.05767844268204758, 0.05803893294881038, 0.058759913482335974, 0.058759913482335974, 0.05948089401586157, 0.05912040374909877, 0.059841384282624366, 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\ No newline at end of file
diff --git a/pfam_gap_rates/THEG.gap.json b/pfam_gap_rates/THEG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea4f0a3d421548f2ff6885a2809a60038aa7b508
--- /dev/null
+++ b/pfam_gap_rates/THEG.gap.json
@@ -0,0 +1 @@
+{"family": "THEG", "n_seqs": 262, "length": 71, "gap_rates": [0.6183206106870229, 0.5267175572519084, 0.33969465648854963, 0.3244274809160305, 0.3053435114503817, 0.2900763358778626, 0.27099236641221375, 0.2633587786259542, 0.2480916030534351, 0.22900763358778625, 0.183206106870229, 0.1297709923664122, 0.08778625954198473, 0.03435114503816794, 0.019083969465648856, 0.019083969465648856, 0.015267175572519083, 0.011450381679389313, 0.011450381679389313, 0.007633587786259542, 0.007633587786259542, 0.011450381679389313, 0.851145038167939, 0.8435114503816794, 0.011450381679389313, 0.07251908396946564, 0.08396946564885496, 0.09923664122137404, 0.08778625954198473, 0.09541984732824428, 0.1297709923664122, 0.14122137404580154, 0.14122137404580154, 0.13358778625954199, 0.14885496183206107, 0.22137404580152673, 0.2633587786259542, 0.8320610687022901, 0.8816793893129771, 0.9007633587786259, 0.9236641221374046, 0.9427480916030534, 0.9427480916030534, 0.9351145038167938, 0.9083969465648855, 0.8931297709923665, 0.8740458015267175, 0.549618320610687, 0.366412213740458, 0.2595419847328244, 0.2595419847328244, 0.2595419847328244, 0.26717557251908397, 0.27099236641221375, 0.2748091603053435, 0.27099236641221375, 0.2786259541984733, 0.2786259541984733, 0.2748091603053435, 0.2786259541984733, 0.2862595419847328, 0.2824427480916031, 0.2862595419847328, 0.2862595419847328, 0.2862595419847328, 0.2862595419847328, 0.2862595419847328, 0.29770992366412213, 0.33969465648854963, 0.3702290076335878, 0.5877862595419847], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TIL.gap.json b/pfam_gap_rates/TIL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70064410e87cf50a1ee459848c118e9595472c0b
--- /dev/null
+++ b/pfam_gap_rates/TIL.gap.json
@@ -0,0 +1 @@
+{"family": "TIL", "n_seqs": 2261, "length": 67, "gap_rates": [0.10614772224679346, 0.9345422379478107, 0.0950906678460858, 0.07518796992481203, 0.057054400707651484, 0.0508624502432552, 0.0367094206103494, 0.03361344537815126, 0.03140203449800973, 0.022998673153471916, 0.022114108801415303, 0.9354268022998673, 0.042459088898717384, 0.055285272003538256, 0.007076514816452897, 0.0035382574082264487, 0.9146395400265369, 0.0030959752321981426, 0.0035382574082264487, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0035382574082264487, 0.0035382574082264487, 0.0035382574082264487, 0.0026536930561698365, 0.010172490048651039, 0.15524104378593542, 0.3149049093321539, 0.9022556390977443, 0.7983193277310925, 0.009730207872622734, 0.0030959752321981426, 0.8283945157010173, 0.9433878814683768, 0.9150818222025653, 0.7226890756302521, 0.030959752321981424, 0.0008845643520566122, 0.0008845643520566122, 0.0004422821760283061, 0.0008845643520566122, 0.005749668288367979, 0.859796550199027, 0.0008845643520566122, 0.0008845643520566122, 0.0008845643520566122, 0.0017691287041132243, 0.0013268465280849183, 0.0008845643520566122, 0.0022114108801415304, 0.003980539584254755, 0.005307386112339673, 0.011499336576735958, 0.015479876160990712, 0.010172490048651039, 0.8920831490490934, 0.7819548872180451, 0.4683768244139761, 0.0145953118089341, 0.014153029632905795, 0.01901813356921716, 0.023883237505528527, 0.03228659885006634, 0.05218929677134011, 0.06634232640424591, 0.06634232640424591], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TIMELESS.gap.json b/pfam_gap_rates/TIMELESS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65dc37475a55e75b7dde2179a42137c05c6b2c26
--- /dev/null
+++ b/pfam_gap_rates/TIMELESS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TIP_N.gap.json b/pfam_gap_rates/TIP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..105c1486cd30af9c299bd75518aac1d6fab89a1e
--- /dev/null
+++ b/pfam_gap_rates/TIP_N.gap.json
@@ -0,0 +1 @@
+{"family": "TIP_N", "n_seqs": 219, "length": 130, "gap_rates": [0.6940639269406392, 0.5662100456621004, 0.9452054794520548, 0.9269406392694064, 0.3698630136986301, 0.3059360730593607, 0.2876712328767123, 0.2648401826484018, 0.2511415525114155, 0.2465753424657534, 0.2374429223744292, 0.7351598173515982, 0.1552511415525114, 0.1506849315068493, 0.1415525114155251, 0.1095890410958904, 0.6986301369863014, 0.6986301369863014, 0.8493150684931506, 0.6986301369863014, 0.6940639269406392, 0.1050228310502283, 0.1095890410958904, 0.0958904109589041, 0.0867579908675799, 0.0867579908675799, 0.0821917808219178, 0.0730593607305936, 0.0593607305936073, 0.0593607305936073, 0.0821917808219178, 0.0684931506849315, 0.5707762557077626, 0.182648401826484, 0.0730593607305936, 0.7899543378995434, 0.8995433789954338, 0.8584474885844748, 0.634703196347032, 0.0502283105022831, 0.045662100456621, 0.045662100456621, 0.0410958904109589, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0365296803652968, 0.0319634703196347, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0776255707762557, 0.8036529680365296, 0.4748858447488584, 0.0639269406392694, 0.0273972602739726, 0.0273972602739726, 0.0365296803652968, 0.1141552511415525, 0.1004566210045662, 0.0502283105022831, 0.0639269406392694, 0.0776255707762557, 0.0776255707762557, 0.0730593607305936, 0.091324200913242, 0.1187214611872146, 0.1141552511415525, 0.8310502283105022, 0.9269406392694064, 0.8584474885844748, 0.7625570776255708, 0.1050228310502283, 0.1095890410958904, 0.1004566210045662, 0.1187214611872146, 0.1917808219178082, 0.8082191780821918, 0.8995433789954338, 0.9223744292237442, 0.9452054794520548, 0.9178082191780822, 0.8584474885844748, 0.7853881278538812, 0.2785388127853881, 0.2602739726027397, 0.2465753424657534, 0.228310502283105, 0.182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.045662100456621, 0.045662100456621, 0.0410958904109589, 0.045662100456621, 0.0730593607305936, 0.1141552511415525, 0.0958904109589041, 0.1004566210045662, 0.1004566210045662, 0.1232876712328767, 0.1187214611872146, 0.1187214611872146, 0.1461187214611872, 0.1689497716894977, 0.8995433789954338, 0.9360730593607306, 0.8767123287671232, 0.2146118721461187, 0.2465753424657534, 0.2465753424657534, 0.2876712328767123, 0.3013698630136986, 0.3287671232876712, 0.4155251141552511, 0.4703196347031963, 0.589041095890411, 0.6073059360730594, 0.6484018264840182, 0.7442922374429224, 0.7945205479452054, 0.8538812785388128, 0.9041095890410958, 0.9360730593607306], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TIR.gap.json b/pfam_gap_rates/TIR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e358fbf0d2f7536c39de7507cef7af6d5e77973b
--- /dev/null
+++ b/pfam_gap_rates/TIR.gap.json
@@ -0,0 +1 @@
+{"family": "TIR", "n_seqs": 2468, "length": 192, "gap_rates": [0.7070502431118314, 0.2848460291734198, 0.24351701782820098, 0.21029173419773095, 0.20583468395461912, 0.2025931928687196, 0.9461102106969206, 0.34359805510534847, 0.2824149108589951, 0.27025931928687197, 0.26742301458670986, 0.1539708265802269, 0.13168557536466774, 0.13492706645056726, 0.1280388978930308, 0.12034035656401945, 0.11061588330632091, 0.10980551053484602, 0.10777957860615883, 0.10413290113452188, 0.10291734197730956, 0.10291734197730956, 0.10291734197730956, 0.10170178282009724, 0.10048622366288493, 0.10008103727714748, 0.7256888168557536, 0.6770664505672609, 0.1146677471636953, 0.10089141004862237, 0.09116693679092383, 0.08833063209076175, 0.08630470016207456, 0.08427876823338736, 0.08346839546191248, 0.08265802269043761, 0.07860615883306321, 0.07414910858995137, 0.24675850891410048, 0.07698541329011345, 0.07374392220421394, 0.07941653160453808, 0.07252836304700162, 0.0692868719611021, 0.06482982171799027, 0.06280388978930308, 0.06280388978930308, 0.059967585089141004, 0.0919773095623987, 0.05915721231766612, 0.058752025931928686, 0.05672609400324149, 0.053889789303079416, 0.04983792544570503, 0.04781199351701783, 0.048217179902755265, 0.04700162074554295, 0.04700162074554295, 0.04740680713128039, 0.046191247974068074, 0.04578606158833063, 0.044165316045380876, 0.043354943273905995, 0.044165316045380876, 0.04457050243111831, 0.044975688816855756, 0.044975688816855756, 0.04578606158833063, 0.04294975688816856, 0.04376012965964344, 0.044165316045380876, 0.04457050243111831, 0.04538087520259319, 0.046191247974068074, 0.06523500810372772, 0.0506482982171799, 0.04983792544570503, 0.04943273905996758, 0.048217179902755265, 0.048217179902755265, 0.04983792544570503, 0.05226904376012966, 0.05186385737439222, 0.048217179902755265, 0.049027552674230146, 0.05186385737439222, 0.05348460291734198, 0.055915721231766614, 0.5960291734197731, 0.11547811993517018, 0.09846029173419774, 0.09359805510534847, 0.08833063209076175, 0.06118314424635332, 0.05956239870340357, 0.05915721231766612, 0.06037277147487844, 0.06118314424635332, 0.06564019448946515, 0.07050243111831442, 0.07252836304700162, 0.07941653160453808, 0.08225283630470016, 0.08508914100486224, 0.08752025931928688, 0.12884927066450566, 0.1458670988654781, 0.396677471636953, 0.3999189627228525, 0.42706645056726095, 0.4226094003241491, 0.4145056726094003, 0.29578606158833065, 0.19165316045380876, 0.17260940032414912, 0.18111831442463533, 0.1705834683954619, 0.16693679092382496, 0.1693679092382496, 0.17544570502431117, 0.1786871961102107, 0.1766612641815235, 0.17949756888168558, 0.18071312803889789, 0.19165316045380876, 0.4351701782820097, 0.3760129659643436, 0.3419773095623987, 0.6932739059967585, 0.9286871961102107, 0.9355753646677472, 0.9059967585089141, 0.6612641815235009, 0.21555915721231766, 0.19773095623987033, 0.19773095623987033, 0.19854132901134522, 0.19854132901134522, 0.2005672609400324, 0.3184764991896272, 0.33752025931928686, 0.4420583468395462, 0.4481361426256078, 0.4505672609400324, 0.5279578606158833, 0.5328200972447326, 0.5490275526742301, 0.5745542949756888, 0.869935170178282, 0.923419773095624, 0.7042139384116693, 0.5632090761750406, 0.5474068071312804, 0.5299837925445705, 0.5218800648298217, 0.3687196110210697, 0.3853322528363047, 0.3521069692058347, 0.34967585089141007, 0.3492706645056726, 0.3277957860615883, 0.3249594813614263, 0.32576985413290116, 0.32698541329011344, 0.3294165316045381, 0.33144246353322526, 0.33508914100486226, 0.33833063209076175, 0.3427876823338736, 0.3512965964343598, 0.3594003241491086, 0.36628849270664504, 0.9485413290113452, 0.9424635332252836, 0.8626418152350082, 0.5255267423014587, 0.5453808752025932, 0.5619935170178282, 0.5899513776337115, 0.6426256077795786, 0.6896272285251216, 0.723257698541329, 0.7735008103727715, 0.8205024311183144, 0.8448136142625607, 0.9440842787682334, 0.916936790923825, 0.9217990275526742, 0.9274716369529984, 0.93354943273906, 0.936385737439222, 0.9436790923824959], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TLC.gap.json b/pfam_gap_rates/TLC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67d80f8271152e832c0aa18b134815a5c13ae265
--- /dev/null
+++ b/pfam_gap_rates/TLC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TM1586_NiRdase.gap.json b/pfam_gap_rates/TM1586_NiRdase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13063733705d2088e4ac3dc87622131d262973ac
--- /dev/null
+++ b/pfam_gap_rates/TM1586_NiRdase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM132D_N.gap.json b/pfam_gap_rates/TMEM132D_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d812aa22afcd4cea6f8e3c50999613f2cbfc7bd1
--- /dev/null
+++ b/pfam_gap_rates/TMEM132D_N.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM132D_N", "n_seqs": 101, "length": 168, "gap_rates": [0.3564356435643564, 0.18811881188118812, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.16831683168316833, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.8811881188118812, 0.12871287128712872, 0.12871287128712872, 0.1485148514851485, 0.900990099009901, 0.9207920792079208, 0.9207920792079208, 0.9207920792079208, 0.9207920792079208, 0.8910891089108911, 0.13861386138613863, 0.1485148514851485, 0.12871287128712872, 0.1188118811881188, 0.09900990099009901, 0.900990099009901, 0.9108910891089109, 0.9108910891089109, 0.9306930693069307, 0.9108910891089109, 0.9108910891089109, 0.8712871287128713, 0.09900990099009901, 0.13861386138613863, 0.0891089108910891, 0.09900990099009901, 0.0297029702970297, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.8613861386138614, 0.8415841584158416, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.039603960396039604, 0.7920792079207921, 0.801980198019802, 0.801980198019802, 0.8118811881188119, 0.8811881188118812, 0.8811881188118812, 0.9108910891089109, 0.9306930693069307, 0.9306930693069307, 0.9207920792079208, 0.8910891089108911, 0.8811881188118812, 0.8514851485148515, 0.801980198019802, 0.801980198019802, 0.801980198019802, 0.7821782178217822, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.2079207920792079, 0.19801980198019803, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.04950495049504951, 0.039603960396039604, 0.04950495049504951, 0.039603960396039604, 0.039603960396039604, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.8910891089108911, 0.9108910891089109, 0.8910891089108911, 0.06930693069306931, 0.1485148514851485, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.9306930693069307, 0.32673267326732675, 0.22772277227722773, 0.10891089108910891, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.19801980198019803, 0.24752475247524752, 0.27722772277227725, 0.38613861386138615, 0.42574257425742573, 0.49504950495049505], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM18.gap.json b/pfam_gap_rates/TMEM18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3acc9f3facc045a2a30919f32c5d462fbdb202d6
--- /dev/null
+++ b/pfam_gap_rates/TMEM18.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM18", "n_seqs": 141, "length": 124, "gap_rates": [0.36879432624113473, 0.24113475177304963, 0.2127659574468085, 0.20567375886524822, 0.19858156028368795, 0.1773049645390071, 0.15602836879432624, 0.14893617021276595, 0.14184397163120568, 0.1347517730496454, 0.1347517730496454, 0.1347517730496454, 0.1347517730496454, 0.1347517730496454, 0.1276595744680851, 0.1276595744680851, 0.12056737588652482, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.10638297872340426, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.9361702127659575, 0.9290780141843972, 0.09219858156028368, 0.09929078014184398, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.07801418439716312, 0.07801418439716312, 0.06382978723404255, 0.06382978723404255, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.04964539007092199, 0.0425531914893617, 0.0425531914893617, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.0425531914893617, 0.04964539007092199, 0.05673758865248227, 0.05673758865248227, 0.05673758865248227, 0.05673758865248227, 0.04964539007092199, 0.05673758865248227, 0.06382978723404255, 0.05673758865248227, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.9432624113475178, 0.9432624113475178, 0.9290780141843972, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.04964539007092199, 0.06382978723404255, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.09219858156028368, 0.09929078014184398, 0.09929078014184398, 0.10638297872340426, 0.10638297872340426, 0.11347517730496454, 0.12056737588652482, 0.1347517730496454, 0.1347517730496454, 0.1347517730496454, 0.16312056737588654, 0.24822695035460993, 0.574468085106383], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPM_phosphatase.gap.json b/pfam_gap_rates/TPM_phosphatase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8ef62d61ebe6b75649c012a9c4479d12a040897
--- /dev/null
+++ b/pfam_gap_rates/TPM_phosphatase.gap.json
@@ -0,0 +1 @@
+{"family": "TPM_phosphatase", "n_seqs": 1447, "length": 134, "gap_rates": [0.3158258465791292, 0.21907394609536973, 0.19281271596406357, 0.19004837595024188, 0.16793365583966827, 0.1375259156876296, 0.11679336558396683, 0.09536973047684866, 0.0912232204561161, 0.08707671043538355, 0.07878369039391846, 0.10020732550103663, 0.07740152038700761, 0.06288873531444368, 0.05459571527297857, 0.05459571527297857, 0.055286800276434005, 0.053213545266067724, 0.053213545266067724, 0.051831375259156875, 0.05044920525224603, 0.05044920525224603, 0.05044920525224603, 0.051831375259156875, 0.04837595024187975, 0.04768486523842433, 0.046993780234968904, 0.060124395300621976, 0.055286800276434005, 0.046993780234968904, 0.044920525224602624, 0.04284727021423635, 0.0414651002073255, 0.04008293020041465, 0.03939184519695923, 0.03800967519004837, 0.03731859018659295, 0.05597788527988943, 0.05114029025570145, 0.8977194194885971, 0.9163787145818936, 0.9357290946786455, 0.9274360746371804, 0.9094678645473393, 0.796821008984105, 0.11402902557014513, 0.1271596406357982, 0.1022805805114029, 0.0718728403593642, 0.9295093296475466, 0.06427090532135453, 0.06427090532135453, 0.015894955079474776, 0.013130615065653075, 0.010366275051831375, 0.010366275051831375, 0.008984105044920525, 0.0082930200414651, 0.01243953006219765, 0.01243953006219765, 0.01243953006219765, 0.0110573600552868, 0.013821700069108501, 0.0248790601243953, 0.01243953006219765, 0.013130615065653075, 0.11472011057360056, 0.11541119557705598, 0.18935729094678647, 0.16655148583275742, 0.05390463026952315, 0.04768486523842433, 0.008984105044920525, 0.0055286800276434, 0.0055286800276434, 0.0055286800276434, 0.0055286800276434, 0.04077401520387008, 0.035245335176226675, 0.010366275051831375, 0.9433310297166552, 0.9060124395300622, 0.010366275051831375, 0.008984105044920525, 0.008984105044920525, 0.0082930200414651, 0.0048375950241879755, 0.0048375950241879755, 0.0055286800276434, 0.015894955079474776, 0.0110573600552868, 0.0055286800276434, 0.0055286800276434, 0.013130615065653075, 0.026952315134761574, 0.0746371803731859, 0.0663441603317208, 0.021423635107118175, 0.0221147201105736, 0.013821700069108501, 0.011748445058742226, 0.0110573600552868, 0.0110573600552868, 0.017277125086385625, 0.0110573600552868, 0.0110573600552868, 0.0110573600552868, 0.011748445058742226, 0.01243953006219765, 0.3655839668279198, 0.027643400138217002, 0.02626123013130615, 0.02626123013130615, 0.02626123013130615, 0.025570145127850726, 0.028334485141672427, 0.031098825155494125, 0.03178991015894955, 0.03178991015894955, 0.033863165169315826, 0.0331720801658604, 0.033863165169315826, 0.033863165169315826, 0.03455425017277125, 0.03455425017277125, 0.035245335176226675, 0.03731859018659295, 0.03939184519695923, 0.0525224602626123, 0.07740152038700761, 0.11541119557705598, 0.24948168624740844, 0.4968901174844506, 0.9378023496890118], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPP_enzyme_C.gap.json b/pfam_gap_rates/TPP_enzyme_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c276d406fbd43034350cab01359c34e85325c0a
--- /dev/null
+++ b/pfam_gap_rates/TPP_enzyme_C.gap.json
@@ -0,0 +1 @@
+{"family": "TPP_enzyme_C", "n_seqs": 5000, "length": 178, "gap_rates": [0.6068, 0.3874, 0.3408, 0.331, 0.3198, 0.3106, 0.3042, 0.4958, 0.4828, 0.4768, 0.4704, 0.4394, 0.4848, 0.4028, 0.3988, 0.3848, 0.3588, 0.2188, 0.2074, 0.1904, 0.1832, 0.1838, 0.1828, 0.833, 0.2476, 0.207, 0.1296, 0.1238, 0.1214, 0.1212, 0.1188, 0.1174, 0.1146, 0.111, 0.106, 0.1032, 0.1018, 0.1012, 0.1008, 0.1004, 0.1002, 0.1, 0.0996, 0.9386, 0.1006, 0.9118, 0.93, 0.9494, 0.9192, 0.9062, 0.1524, 0.1272, 0.0594, 0.035, 0.0174, 0.015, 0.0108, 0.0108, 0.0098, 0.0098, 0.0098, 0.0096, 0.0096, 0.0096, 0.0098, 0.0092, 0.0082, 0.0084, 0.6278, 0.0092, 0.0078, 0.0072, 0.0072, 0.0074, 0.0084, 0.0086, 0.0086, 0.0088, 0.0096, 0.0196, 0.0104, 0.0086, 0.0082, 0.0082, 0.008, 0.0082, 0.0076, 0.0076, 0.0076, 0.0076, 0.0078, 0.0084, 0.0098, 0.0174, 0.0168, 0.0138, 0.014, 0.0148, 0.0186, 0.6828, 0.695, 0.6704, 0.0266, 0.0388, 0.0416, 0.04, 0.041, 0.0612, 0.1438, 0.105, 0.1164, 0.1258, 0.1116, 0.1674, 0.1468, 0.5056, 0.504, 0.7838, 0.8224, 0.9332, 0.9446, 0.881, 0.803, 0.762, 0.381, 0.0768, 0.071, 0.0558, 0.0652, 0.0452, 0.0436, 0.0428, 0.0428, 0.0432, 0.0432, 0.0434, 0.0438, 0.0442, 0.0476, 0.048, 0.0488, 0.6594, 0.0574, 0.0548, 0.924, 0.8432, 0.0538, 0.1066, 0.1052, 0.0594, 0.0614, 0.6114, 0.6006, 0.0568, 0.056, 0.0568, 0.0578, 0.0584, 0.0606, 0.066, 0.0684, 0.0742, 0.079, 0.0858, 0.8588, 0.9338, 0.893, 0.7784, 0.0978, 0.1042, 0.1092, 0.1088, 0.113, 0.1172, 0.1204, 0.1298, 0.2002, 0.4508], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPP_enzyme_M.gap.json b/pfam_gap_rates/TPP_enzyme_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9238035dc6b47ee09364eafdae6c24fd3ebf62bf
--- /dev/null
+++ b/pfam_gap_rates/TPP_enzyme_M.gap.json
@@ -0,0 +1 @@
+{"family": "TPP_enzyme_M", "n_seqs": 5000, "length": 142, "gap_rates": [0.4358, 0.1666, 0.0842, 0.0496, 0.0418, 0.0316, 0.0274, 0.026, 0.0252, 0.0246, 0.0232, 0.0222, 0.0186, 0.0176, 0.0154, 0.0148, 0.014, 0.0142, 0.0132, 0.0132, 0.0128, 0.0128, 0.0126, 0.1614, 0.1586, 0.9316, 0.0124, 0.0116, 0.0112, 0.0106, 0.01, 0.01, 0.0092, 0.0084, 0.0084, 0.009, 0.0084, 0.0102, 0.0084, 0.0076, 0.0074, 0.0074, 0.0074, 0.0072, 0.0074, 0.0076, 0.0064, 0.0052, 0.0056, 0.0048, 0.0052, 0.0054, 0.0052, 0.0052, 0.0212, 0.0076, 0.0084, 0.0074, 0.0152, 0.0124, 0.0684, 0.0736, 0.883, 0.0898, 0.0954, 0.0952, 0.0992, 0.1012, 0.0724, 0.0356, 0.0172, 0.0144, 0.0102, 0.0086, 0.006, 0.0062, 0.0082, 0.007, 0.006, 0.0054, 0.005, 0.005, 0.0048, 0.005, 0.005, 0.0058, 0.0072, 0.038, 0.0362, 0.0172, 0.0532, 0.0562, 0.5714, 0.161, 0.1512, 0.152, 0.1368, 0.913, 0.0918, 0.068, 0.0562, 0.8338, 0.0718, 0.0566, 0.0648, 0.09, 0.0776, 0.0952, 0.733, 0.041, 0.0246, 0.0238, 0.0268, 0.0274, 0.0296, 0.0352, 0.0358, 0.0396, 0.0478, 0.0606, 0.0664, 0.0702, 0.0784, 0.0906, 0.1028, 0.2032, 0.1666, 0.1168, 0.1188, 0.1228, 0.1246, 0.1268, 0.1302, 0.1334, 0.1356, 0.1386, 0.1424, 0.1482, 0.1606, 0.2034, 0.3208, 0.5168], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPP_enzyme_N.gap.json b/pfam_gap_rates/TPP_enzyme_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..565d115ce9d8ad613e715a41656a535c3b462488
--- /dev/null
+++ b/pfam_gap_rates/TPP_enzyme_N.gap.json
@@ -0,0 +1 @@
+{"family": "TPP_enzyme_N", "n_seqs": 5000, "length": 187, "gap_rates": [0.8042, 0.296, 0.1812, 0.1288, 0.1044, 0.0854, 0.065, 0.057, 0.0508, 0.0474, 0.0452, 0.043, 0.0408, 0.0468, 0.0378, 0.0374, 0.0366, 0.035, 0.032, 0.031, 0.0306, 0.0308, 0.0304, 0.0298, 0.0328, 0.0326, 0.0362, 0.0316, 0.029, 0.947, 0.0268, 0.026, 0.026, 0.0254, 0.0256, 0.0258, 0.0264, 0.026, 0.2454, 0.8948, 0.9046, 0.7336, 0.113, 0.0232, 0.0226, 0.022, 0.0214, 0.0212, 0.0208, 0.0206, 0.0204, 0.021, 0.0208, 0.0196, 0.0186, 0.0184, 0.0186, 0.0168, 0.0168, 0.017, 0.0178, 0.018, 0.0214, 0.0214, 0.018, 0.0228, 0.95, 0.0228, 0.081, 0.018, 0.0178, 0.018, 0.0186, 0.0182, 0.0178, 0.0196, 0.0188, 0.0318, 0.0232, 0.0206, 0.0206, 0.0212, 0.0204, 0.0198, 0.0198, 0.0198, 0.0198, 0.0196, 0.026, 0.0266, 0.0216, 0.0204, 0.0196, 0.019, 0.0184, 0.0182, 0.0182, 0.0178, 0.0182, 0.0188, 0.0192, 0.019, 0.0188, 0.019, 0.019, 0.0194, 0.019, 0.0196, 0.0198, 0.02, 0.0198, 0.8264, 0.8706, 0.9444, 0.879, 0.851, 0.8116, 0.0586, 0.0514, 0.0468, 0.0402, 0.041, 0.769, 0.0446, 0.0272, 0.8656, 0.9436, 0.9262, 0.8438, 0.0306, 0.0414, 0.0408, 0.0384, 0.0268, 0.0328, 0.0312, 0.032, 0.0304, 0.0306, 0.0478, 0.0336, 0.0316, 0.0312, 0.032, 0.0334, 0.0358, 0.0364, 0.034, 0.0354, 0.04, 0.0416, 0.0396, 0.04, 0.0404, 0.0418, 0.0406, 0.0408, 0.041, 0.0426, 0.0432, 0.0442, 0.045, 0.9308, 0.2684, 0.0554, 0.0502, 0.0502, 0.051, 0.053, 0.052, 0.053, 0.0532, 0.0548, 0.0568, 0.0598, 0.0632, 0.0692, 0.0812, 0.0936, 0.1098, 0.1648, 0.219, 0.304, 0.377, 0.4938, 0.7582, 0.9138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TRAPPC-Trs85.gap.json b/pfam_gap_rates/TRAPPC-Trs85.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ddaded171cdab260d06cfb84ea27db7e0d7e92a
--- /dev/null
+++ b/pfam_gap_rates/TRAPPC-Trs85.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/TRF.gap.json b/pfam_gap_rates/TRF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2946d444269546640c6a7a7f2bec996b9704b565
--- /dev/null
+++ b/pfam_gap_rates/TRF.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/TTL.gap.json b/pfam_gap_rates/TTL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5637e50e512ba9bbe8739e8da24eb9f17fff3239
--- /dev/null
+++ b/pfam_gap_rates/TTL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tap-RNA_bind.gap.json b/pfam_gap_rates/Tap-RNA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9791ee08268223eb854c7ef17e99824f48c67b9
--- /dev/null
+++ b/pfam_gap_rates/Tap-RNA_bind.gap.json
@@ -0,0 +1 @@
+{"family": "Tap-RNA_bind", "n_seqs": 105, "length": 84, "gap_rates": [0.9333333333333333, 0.5238095238095238, 0.3333333333333333, 0.26666666666666666, 0.2571428571428571, 0.1619047619047619, 0.12380952380952381, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.06666666666666667, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.09523809523809523, 0.08571428571428572, 0.047619047619047616, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.6761904761904762, 0.19047619047619047, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.047619047619047616, 0.047619047619047616, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06666666666666667, 0.05714285714285714, 0.0761904761904762, 0.05714285714285714, 0.05714285714285714, 0.0761904761904762, 0.08571428571428572, 0.09523809523809523, 0.1523809523809524, 0.17142857142857143, 0.19047619047619047, 0.2, 0.2, 0.2, 0.20952380952380953, 0.21904761904761905, 0.22857142857142856, 0.2857142857142857, 0.3047619047619048, 0.42857142857142855, 0.7142857142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tautomerase.gap.json b/pfam_gap_rates/Tautomerase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d88983b364733e9bdd20a339fb52cf7e73de80c9
--- /dev/null
+++ b/pfam_gap_rates/Tautomerase.gap.json
@@ -0,0 +1 @@
+{"family": "Tautomerase", "n_seqs": 880, "length": 61, "gap_rates": [0.1409090909090909, 0.11704545454545455, 0.08636363636363636, 0.06363636363636363, 0.05795454545454545, 0.05113636363636364, 0.04318181818181818, 0.03409090909090909, 0.023863636363636365, 0.020454545454545454, 0.015909090909090907, 0.7079545454545455, 0.04772727272727273, 0.005681818181818182, 0.003409090909090909, 0.003409090909090909, 0.003409090909090909, 0.0022727272727272726, 0.0011363636363636363, 0.0011363636363636363, 0.0011363636363636363, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011363636363636363, 0.0022727272727272726, 0.0022727272727272726, 0.004545454545454545, 0.0022727272727272726, 0.0, 0.0, 0.9318181818181818, 0.0022727272727272726, 0.003409090909090909, 0.0011363636363636363, 0.0, 0.0011363636363636363, 0.0011363636363636363, 0.003409090909090909, 0.004545454545454545, 0.004545454545454545, 0.005681818181818182, 0.005681818181818182, 0.006818181818181818, 0.006818181818181818, 0.00909090909090909, 0.014772727272727272, 0.01818181818181818, 0.019318181818181818, 0.05227272727272727, 0.0715909090909091, 0.07954545454545454, 0.1, 0.1590909090909091, 0.27045454545454545, 0.3659090909090909, 0.4602272727272727, 0.6465909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tctex-1.gap.json b/pfam_gap_rates/Tctex-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..261f60677925f456e5fe1023426da6c3664321b6
--- /dev/null
+++ b/pfam_gap_rates/Tctex-1.gap.json
@@ -0,0 +1 @@
+{"family": "Tctex-1", "n_seqs": 747, "length": 138, "gap_rates": [0.7416331994645248, 0.3453815261044177, 0.23293172690763053, 0.2034805890227577, 0.17804551539491298, 0.14190093708165996, 0.13788487282463185, 0.12449799196787148, 0.11244979919678715, 0.10843373493975904, 0.10307898259705489, 0.10040160642570281, 0.09504685408299866, 0.09236947791164658, 0.08835341365461848, 0.08701472556894244, 0.08299866131191433, 0.20883534136546184, 0.6961178045515395, 0.07095046854082998, 0.07095046854082998, 0.07228915662650602, 0.06961178045515395, 0.06291834002677377, 0.060240963855421686, 0.050870147255689425, 0.049531459170013385, 0.049531459170013385, 0.04551539491298527, 0.04417670682730924, 0.040160642570281124, 0.03614457831325301, 0.03614457831325301, 0.03480589022757698, 0.03614457831325301, 0.0321285140562249, 0.030789825970548863, 0.030789825970548863, 0.030789825970548863, 0.030789825970548863, 0.030789825970548863, 0.5073627844712182, 0.5087014725568942, 0.5408299866131191, 0.535475234270415, 0.4203480589022758, 0.4042838018741633, 0.37617135207496655, 0.9062918340026773, 0.8995983935742972, 0.33467202141900937, 0.3119143239625167, 0.013386880856760375, 0.012048192771084338, 0.013386880856760375, 0.0107095046854083, 0.009370816599732263, 0.012048192771084338, 0.009370816599732263, 0.0107095046854083, 0.012048192771084338, 0.012048192771084338, 0.013386880856760375, 0.013386880856760375, 0.09906291834002677, 0.09370816599732262, 0.09103078982597054, 0.01606425702811245, 0.8902275769745649, 0.9036144578313253, 0.9116465863453815, 0.9129852744310576, 0.9129852744310576, 0.9143239625167336, 0.9170013386880856, 0.9210174029451138, 0.927710843373494, 0.9357429718875502, 0.9370816599732262, 0.9410977242302544, 0.9424364123159303, 0.9451137884872824, 0.9491298527443106, 0.9477911646586346, 0.9451137884872824, 0.9424364123159303, 0.9370816599732262, 0.9370816599732262, 0.927710843373494, 0.9210174029451138, 0.9183400267737617, 0.9156626506024096, 0.9143239625167336, 0.9129852744310576, 0.9116465863453815, 0.9076305220883534, 0.8955823293172691, 0.8808567603748326, 0.01740294511378849, 0.01740294511378849, 0.025435073627844713, 0.025435073627844713, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.030789825970548863, 0.07095046854082998, 0.038821954484605084, 0.03748326639892905, 0.038821954484605084, 0.0428380187416332, 0.04685408299866131, 0.050870147255689425, 0.0535475234270415, 0.05622489959839357, 0.058902275769745646, 0.060240963855421686, 0.8969210174029452, 0.9089692101740294, 0.8768406961178046, 0.06291834002677377, 0.0642570281124498, 0.0749665327978581, 0.08032128514056225, 0.08299866131191433, 0.08969210174029452, 0.09370816599732262, 0.09772423025435073, 0.09772423025435073, 0.09906291834002677, 0.10040160642570281, 0.10174029451137885, 0.11646586345381527, 0.14323962516733602, 0.5274431057563588], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TetR_C_3.gap.json b/pfam_gap_rates/TetR_C_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..089929c22a9bd51abd668c0344f49c099a1d0cb1
--- /dev/null
+++ b/pfam_gap_rates/TetR_C_3.gap.json
@@ -0,0 +1 @@
+{"family": "TetR_C_3", "n_seqs": 243, "length": 143, "gap_rates": [0.26337448559670784, 0.13580246913580246, 0.09053497942386832, 0.09053497942386832, 0.0823045267489712, 0.0823045267489712, 0.0823045267489712, 0.0823045267489712, 0.07818930041152264, 0.07407407407407407, 0.06584362139917696, 0.06584362139917696, 0.06172839506172839, 0.05761316872427984, 0.053497942386831275, 0.04526748971193416, 0.037037037037037035, 0.02880658436213992, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.04938271604938271, 0.0411522633744856, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.0205761316872428, 0.024691358024691357, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.024691358024691357, 0.02880658436213992, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.02880658436213992, 0.02880658436213992, 0.02880658436213992, 0.037037037037037035, 0.037037037037037035, 0.0411522633744856, 0.0411522633744856, 0.04526748971193416, 0.04526748971193416, 0.04526748971193416, 0.04526748971193416, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.05761316872427984, 0.05761316872427984, 0.05761316872427984, 0.05761316872427984, 0.06172839506172839, 0.16872427983539096, 0.19753086419753085, 0.1934156378600823, 0.1646090534979424, 0.12757201646090535, 0.13168724279835392, 0.1111111111111111, 0.09465020576131687, 0.09465020576131687, 0.09465020576131687, 0.09465020576131687, 0.09465020576131687, 0.09465020576131687, 0.09465020576131687, 0.09465020576131687, 0.09876543209876543, 0.10699588477366255, 0.10699588477366255, 0.10699588477366255, 0.10699588477366255, 0.12345679012345678, 0.1522633744855967, 0.18930041152263374, 0.2222222222222222, 0.2839506172839506, 0.5432098765432098, 0.9218106995884774], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TetR_C_8.gap.json b/pfam_gap_rates/TetR_C_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf3633d6b97424252f51d25b4532214de3937095
--- /dev/null
+++ b/pfam_gap_rates/TetR_C_8.gap.json
@@ -0,0 +1 @@
+{"family": "TetR_C_8", "n_seqs": 665, "length": 80, "gap_rates": [0.8857142857142857, 0.5548872180451128, 0.2857142857142857, 0.18045112781954886, 0.11879699248120301, 0.06015037593984962, 0.03609022556390978, 0.02556390977443609, 0.01804511278195489, 0.013533834586466165, 0.012030075187969926, 0.010526315789473684, 0.012030075187969926, 0.009022556390977444, 0.009022556390977444, 0.007518796992481203, 0.004511278195488722, 0.0030075187969924814, 0.0015037593984962407, 0.0015037593984962407, 0.0015037593984962407, 0.0015037593984962407, 0.007518796992481203, 0.006015037593984963, 0.009022556390977444, 0.007518796992481203, 0.06616541353383458, 0.06315789473684211, 0.007518796992481203, 0.004511278195488722, 0.0015037593984962407, 0.0015037593984962407, 0.0, 0.0, 0.0, 0.0, 0.0015037593984962407, 0.0, 0.0, 0.0015037593984962407, 0.0015037593984962407, 0.0030075187969924814, 0.004511278195488722, 0.6451127819548872, 0.9187969924812031, 0.5157894736842106, 0.3157894736842105, 0.1518796992481203, 0.09473684210526316, 0.031578947368421054, 0.01804511278195489, 0.009022556390977444, 0.0015037593984962407, 0.0030075187969924814, 0.0015037593984962407, 0.0015037593984962407, 0.0015037593984962407, 0.0015037593984962407, 0.0015037593984962407, 0.0015037593984962407, 0.0015037593984962407, 0.0015037593984962407, 0.0, 0.009022556390977444, 0.006015037593984963, 0.0, 0.0, 0.0, 0.0, 0.0015037593984962407, 0.0030075187969924814, 0.0030075187969924814, 0.004511278195488722, 0.004511278195488722, 0.006015037593984963, 0.007518796992481203, 0.010526315789473684, 0.010526315789473684, 0.04661654135338346, 0.33383458646616543], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thi4.gap.json b/pfam_gap_rates/Thi4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47e7401d77f99cebdca76c990f8ee44b8337e570
--- /dev/null
+++ b/pfam_gap_rates/Thi4.gap.json
@@ -0,0 +1 @@
+{"family": "Thi4", "n_seqs": 464, "length": 248, "gap_rates": [0.4676724137931034, 0.3900862068965517, 0.3793103448275862, 0.36853448275862066, 0.36853448275862066, 0.3620689655172414, 0.3620689655172414, 0.3620689655172414, 0.3577586206896552, 0.35344827586206895, 0.35344827586206895, 0.35344827586206895, 0.3448275862068966, 0.27370689655172414, 0.22413793103448276, 0.1939655172413793, 0.14870689655172414, 0.08189655172413793, 0.07543103448275862, 0.07327586206896551, 0.07327586206896551, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.07112068965517242, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.5646551724137931, 0.3922413793103448, 0.06896551724137931, 0.06896551724137931, 0.0668103448275862, 0.0668103448275862, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ThiC_Rad_SAM.gap.json b/pfam_gap_rates/ThiC_Rad_SAM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ade4660bb91ea19d00787ab05cc534977d88765
--- /dev/null
+++ b/pfam_gap_rates/ThiC_Rad_SAM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredoxin_9.gap.json b/pfam_gap_rates/Thioredoxin_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0736e2b99704ee34bcaa9920f1d9622bc9a96929
--- /dev/null
+++ b/pfam_gap_rates/Thioredoxin_9.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredoxin_9", "n_seqs": 244, "length": 134, "gap_rates": [0.6147540983606558, 0.4262295081967213, 0.35655737704918034, 0.3114754098360656, 0.2540983606557377, 0.22950819672131148, 0.21311475409836064, 0.20081967213114754, 0.20081967213114754, 0.1885245901639344, 0.1762295081967213, 0.16393442622950818, 0.1721311475409836, 0.569672131147541, 0.13114754098360656, 0.12704918032786885, 0.11885245901639344, 0.10245901639344263, 0.09016393442622951, 0.0860655737704918, 0.0778688524590164, 0.07377049180327869, 0.06967213114754098, 0.06147540983606557, 0.05737704918032787, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.045081967213114756, 0.05327868852459016, 0.05327868852459016, 0.06147540983606557, 0.8647540983606558, 0.889344262295082, 0.7991803278688525, 0.0860655737704918, 0.06147540983606557, 0.05737704918032787, 0.04918032786885246, 0.045081967213114756, 0.036885245901639344, 0.03278688524590164, 0.040983606557377046, 0.036885245901639344, 0.00819672131147541, 0.00819672131147541, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.4344262295081967, 0.012295081967213115, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.004098360655737705, 0.00819672131147541, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.012295081967213115, 0.01639344262295082, 0.012295081967213115, 0.012295081967213115, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.02459016393442623, 0.028688524590163935, 0.0860655737704918, 0.0860655737704918, 0.7008196721311475, 0.028688524590163935, 0.02459016393442623, 0.02459016393442623, 0.020491803278688523, 0.020491803278688523, 0.020491803278688523, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.020491803278688523, 0.02459016393442623, 0.06967213114754098, 0.020491803278688523, 0.03278688524590164, 0.8237704918032787, 0.020491803278688523, 0.02459016393442623, 0.028688524590163935, 0.028688524590163935, 0.040983606557377046, 0.045081967213114756, 0.03278688524590164, 0.03278688524590164, 0.040983606557377046, 0.04918032786885246, 0.05737704918032787, 0.06967213114754098, 0.09836065573770492, 0.14754098360655737, 0.1557377049180328, 0.18442622950819673, 0.20901639344262296, 0.2336065573770492, 0.319672131147541, 0.4344262295081967, 0.5450819672131147, 0.7459016393442623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ThylakoidFormat.gap.json b/pfam_gap_rates/ThylakoidFormat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..badfff91d581146aec4203f52e6707705352e20e
--- /dev/null
+++ b/pfam_gap_rates/ThylakoidFormat.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tic22.gap.json b/pfam_gap_rates/Tic22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f0d6c8c87e1aa73315c599681cd060d89db961c
--- /dev/null
+++ b/pfam_gap_rates/Tic22.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TilS.gap.json b/pfam_gap_rates/TilS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c648eb8444fba7ff4d7aaadec81a0c187372cd91
--- /dev/null
+++ b/pfam_gap_rates/TilS.gap.json
@@ -0,0 +1 @@
+{"family": "TilS", "n_seqs": 592, "length": 74, "gap_rates": [0.44763513513513514, 0.2956081081081081, 0.12837837837837837, 0.07939189189189189, 0.04560810810810811, 0.028716216216216218, 0.02533783783783784, 0.02533783783783784, 0.02195945945945946, 0.018581081081081082, 0.015202702702702704, 0.013513513513513514, 0.013513513513513514, 0.011824324324324325, 0.010135135135135136, 0.006756756756756757, 0.006756756756756757, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0016891891891891893, 0.0016891891891891893, 0.0016891891891891893, 0.0016891891891891893, 0.0016891891891891893, 0.0016891891891891893, 0.7567567567567568, 0.9425675675675675, 0.7331081081081081, 0.0016891891891891893, 0.07601351351351351, 0.0016891891891891893, 0.0016891891891891893, 0.0016891891891891893, 0.0016891891891891893, 0.0016891891891891893, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.5523648648648649, 0.0033783783783783786, 0.0016891891891891893, 0.010135135135135136, 0.006756756756756757, 0.008445945945945946, 0.5506756756756757, 0.057432432432432436, 0.02702702702702703, 0.015202702702702704, 0.016891891891891893, 0.02027027027027027, 0.02364864864864865, 0.033783783783783786, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04391891891891892, 0.04391891891891892, 0.9087837837837838, 0.7364864864864865, 0.057432432432432436, 0.7162162162162162, 0.1891891891891892, 0.17736486486486486, 0.08108108108108109, 0.09121621621621621, 0.11317567567567567, 0.15202702702702703, 0.18243243243243243, 0.21621621621621623, 0.2719594594594595, 0.31925675675675674, 0.6773648648648649], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tim54.gap.json b/pfam_gap_rates/Tim54.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd9ff8319492b23b16c3e00841c2c1430a3a9dd5
--- /dev/null
+++ b/pfam_gap_rates/Tim54.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TipAS.gap.json b/pfam_gap_rates/TipAS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3480ade34811f729274e6caab1e66a6d2b09c372
--- /dev/null
+++ b/pfam_gap_rates/TipAS.gap.json
@@ -0,0 +1 @@
+{"family": "TipAS", "n_seqs": 662, "length": 127, "gap_rates": [0.3806646525679758, 0.2794561933534743, 0.256797583081571, 0.23413897280966767, 0.2190332326283988, 0.1933534743202417, 0.17522658610271905, 0.1646525679758308, 0.15709969788519637, 0.15709969788519637, 0.1540785498489426, 0.9486404833836858, 0.16012084592145015, 0.1555891238670695, 0.9486404833836858, 0.5966767371601208, 0.15256797583081572, 0.14652567975830816, 0.1404833836858006, 0.13293051359516617, 0.13897280966767372, 0.16314199395770393, 0.15861027190332327, 0.16314199395770393, 0.11933534743202417, 0.09667673716012085, 0.08308157099697885, 0.07854984894259819, 0.06646525679758308, 0.06042296072507553, 0.054380664652567974, 0.0634441087613293, 0.06042296072507553, 0.054380664652567974, 0.04682779456193353, 0.028700906344410877, 0.02416918429003021, 0.01661631419939577, 0.015105740181268883, 0.013595166163141994, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.0377643504531722, 0.33987915407854985, 0.270392749244713, 0.015105740181268883, 0.01812688821752266, 0.14652567975830816, 0.012084592145015106, 0.0075528700906344415, 0.006042296072507553, 0.004531722054380665, 0.004531722054380665, 0.004531722054380665, 0.00906344410876133, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.004531722054380665, 0.004531722054380665, 0.004531722054380665, 0.004531722054380665, 0.004531722054380665, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.021148036253776436, 0.1027190332326284, 0.02416918429003021, 0.028700906344410877, 0.9229607250755287, 0.23867069486404835, 0.879154078549849, 0.9123867069486404, 0.9425981873111783, 0.9350453172205438, 0.9078549848942599, 0.8595166163141994, 0.006042296072507553, 0.004531722054380665, 0.0030211480362537764, 0.004531722054380665, 0.004531722054380665, 0.004531722054380665, 0.0075528700906344415, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.010574018126888218, 0.012084592145015106, 0.015105740181268883, 0.019637462235649546, 0.01661631419939577, 0.019637462235649546, 0.019637462235649546, 0.03474320241691843, 0.030211480362537766, 0.0256797583081571, 0.0256797583081571, 0.030211480362537766, 0.030211480362537766, 0.03323262839879154, 0.06646525679758308, 0.08006042296072508, 0.1163141993957704, 0.7447129909365559, 0.08308157099697885, 0.04984894259818731, 0.04833836858006042, 0.04380664652567976, 0.04229607250755287, 0.04229607250755287, 0.04229607250755287, 0.04833836858006042, 0.04833836858006042, 0.0513595166163142, 0.0649546827794562, 0.1027190332326284, 0.1797583081570997, 0.31268882175226587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TniB.gap.json b/pfam_gap_rates/TniB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5114a5c40355fbe6d2263c7ce8f374faad220c8
--- /dev/null
+++ b/pfam_gap_rates/TniB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tnp_P_element.gap.json b/pfam_gap_rates/Tnp_P_element.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d47accbf8641f3a0365524f440e4bc516d74c2b1
--- /dev/null
+++ b/pfam_gap_rates/Tnp_P_element.gap.json
@@ -0,0 +1 @@
+{"family": "Tnp_P_element", "n_seqs": 583, "length": 252, "gap_rates": [0.9433962264150944, 0.902229845626072, 0.8782161234991424, 0.8456260720411664, 0.8284734133790738, 0.8216123499142367, 0.7958833619210978, 0.79073756432247, 0.7667238421955404, 0.7272727272727273, 0.7135506003430532, 0.7101200686106347, 0.6998284734133791, 0.692967409948542, 0.6843910806174958, 0.6689536878216124, 0.6638078902229846, 0.6123499142367067, 0.8044596912521441, 0.8319039451114922, 0.8593481989708405, 0.8987993138936535, 0.9313893653516295, 0.9416809605488851, 0.9108061749571184, 0.8816466552315609, 0.8404802744425386, 0.8216123499142367, 0.7941680960548885, 0.5917667238421955, 0.5746140651801029, 0.5591766723842195, 0.5506003430531733, 0.5437392795883362, 0.5454545454545454, 0.5351629502572899, 0.5300171526586621, 0.5231560891938251, 0.5214408233276158, 0.5557461406518011, 0.5145797598627787, 0.49914236706689535, 0.4939965694682676, 0.48198970840480276, 0.4751286449399657, 0.4648370497427101, 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\ No newline at end of file
diff --git a/pfam_gap_rates/TolA_bind_tri.gap.json b/pfam_gap_rates/TolA_bind_tri.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3d267018058ff1a9403b0d08aab38e0e736ec26
--- /dev/null
+++ b/pfam_gap_rates/TolA_bind_tri.gap.json
@@ -0,0 +1 @@
+{"family": "TolA_bind_tri", "n_seqs": 278, "length": 81, "gap_rates": [0.8309352517985612, 0.5899280575539568, 0.5071942446043165, 0.4712230215827338, 0.44964028776978415, 0.44964028776978415, 0.4172661870503597, 0.4028776978417266, 0.38489208633093525, 0.37410071942446044, 0.3489208633093525, 0.34532374100719426, 0.3273381294964029, 0.31654676258992803, 0.2949640287769784, 0.49640287769784175, 0.41007194244604317, 0.9244604316546763, 0.9388489208633094, 0.9496402877697842, 0.9496402877697842, 0.935251798561151, 0.9244604316546763, 0.15827338129496402, 0.12949640287769784, 0.09712230215827339, 0.08633093525179857, 0.0683453237410072, 0.04316546762589928, 0.039568345323741004, 0.02877697841726619, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.014388489208633094, 0.014388489208633094, 0.02158273381294964, 0.02158273381294964, 0.025179856115107913, 0.02877697841726619, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.046762589928057555, 0.050359712230215826, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.05755395683453238, 0.07913669064748201, 0.11151079136690648, 0.1366906474820144, 0.18705035971223022, 0.2697841726618705, 0.4856115107913669, 0.802158273381295], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tom22.gap.json b/pfam_gap_rates/Tom22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5842a9047c2ca0e5e6043de0b6dee905bc03c701
--- /dev/null
+++ b/pfam_gap_rates/Tom22.gap.json
@@ -0,0 +1 @@
+{"family": "Tom22", "n_seqs": 262, "length": 141, "gap_rates": [0.5572519083969466, 0.5534351145038168, 0.549618320610687, 0.5419847328244275, 0.5381679389312977, 0.5343511450381679, 0.5343511450381679, 0.5343511450381679, 0.5343511450381679, 0.5305343511450382, 0.5305343511450382, 0.5305343511450382, 0.5305343511450382, 0.5572519083969466, 0.5458015267175572, 0.5458015267175572, 0.5725190839694656, 0.5687022900763359, 0.5954198473282443, 0.6106870229007634, 0.9312977099236641, 0.9122137404580153, 0.8435114503816794, 0.8244274809160306, 0.7938931297709924, 0.7519083969465649, 0.7099236641221374, 0.5534351145038168, 0.5458015267175572, 0.5305343511450382, 0.6259541984732825, 0.7557251908396947, 0.7022900763358778, 0.5992366412213741, 0.5648854961832062, 0.46564885496183206, 0.41603053435114506, 0.3931297709923664, 0.38549618320610685, 0.35877862595419846, 0.3435114503816794, 0.3435114503816794, 0.3435114503816794, 0.8854961832061069, 0.5992366412213741, 0.549618320610687, 0.3015267175572519, 0.27099236641221375, 0.2480916030534351, 0.24045801526717558, 0.2595419847328244, 0.37786259541984735, 0.4732824427480916, 0.3244274809160305, 0.18702290076335878, 0.183206106870229, 0.17938931297709923, 0.17557251908396945, 0.17557251908396945, 0.17557251908396945, 0.17557251908396945, 0.17557251908396945, 0.17557251908396945, 0.183206106870229, 0.183206106870229, 0.17557251908396945, 0.1717557251908397, 0.16793893129770993, 0.15648854961832062, 0.15648854961832062, 0.15267175572519084, 0.14122137404580154, 0.14122137404580154, 0.13740458015267176, 0.12595419847328243, 0.1183206106870229, 0.11450381679389313, 0.09541984732824428, 0.07633587786259542, 0.05343511450381679, 0.04580152671755725, 0.04198473282442748, 0.026717557251908396, 0.019083969465648856, 0.007633587786259542, 0.007633587786259542, 0.003816793893129771, 0.003816793893129771, 0.0, 0.0, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.007633587786259542, 0.003816793893129771, 0.003816793893129771, 0.003816793893129771, 0.007633587786259542, 0.08396946564885496, 0.10687022900763359, 0.1183206106870229, 0.16412213740458015, 0.16793893129770993, 0.1183206106870229, 0.1297709923664122, 0.06870229007633588, 0.05725190839694656, 0.04580152671755725, 0.04961832061068702, 0.0648854961832061, 0.07251908396946564, 0.11068702290076336, 0.11450381679389313, 0.21374045801526717, 0.2786259541984733, 0.2900763358778626, 0.366412213740458, 0.3969465648854962, 0.46564885496183206, 0.4847328244274809, 0.5038167938931297, 0.5610687022900763, 0.6030534351145038, 0.7290076335877863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TonB_C.gap.json b/pfam_gap_rates/TonB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dad41a6df66d415d67e130e09bc4ece7308926a8
--- /dev/null
+++ b/pfam_gap_rates/TonB_C.gap.json
@@ -0,0 +1 @@
+{"family": "TonB_C", "n_seqs": 2683, "length": 82, "gap_rates": [0.9332836377189713, 0.4603056280283265, 0.2746925083861349, 0.20089452105851657, 0.18635855385762207, 0.16846813268729036, 0.16585911293328365, 0.16250465896384644, 0.15728661945583303, 0.15169586284010436, 0.14461423779351473, 0.12225121133060007, 0.10212448751397689, 0.08497950055907566, 0.06708907938874395, 0.0573984345881476, 0.035408125232948194, 0.01975400670890794, 0.010436079016026835, 0.007081625046589639, 0.004845322400298174, 0.005218039508013418, 0.004845322400298174, 0.004099888184867686, 0.007081625046589639, 0.005963473723443906, 0.002981736861721953, 0.003354453969437197, 0.003727171077152441, 0.0022363026462914647, 0.002981736861721953, 0.002609019754006709, 0.002981736861721953, 0.002981736861721953, 0.004099888184867686, 0.003727171077152441, 0.002981736861721953, 0.004472605292582929, 0.004845322400298174, 0.004472605292582929, 0.17778606038017145, 0.07081625046589639, 0.2154304882594111, 0.007827059262020127, 0.007081625046589639, 0.007081625046589639, 0.007081625046589639, 0.007827059262020127, 0.007081625046589639, 0.007081625046589639, 0.007081625046589639, 0.007081625046589639, 0.008572493477450614, 0.009317927692881103, 0.5449124114796869, 0.020499440924338426, 0.01975400670890794, 0.01714498695490123, 0.016399552739470743, 0.01900857249347745, 0.0253447633246366, 0.03689899366380917, 0.038389862094670144, 0.0726798360044726, 0.8669399925456579, 0.12038762579202385, 0.12635109951546775, 0.08721580320536712, 0.08460678345136041, 0.08609765188222139, 0.09616101379053299, 0.10585165859112933, 0.1147968691762952, 0.9396198285501305, 0.23332090942974282, 0.23108460678345136, 0.14498695490122995, 0.1528140141632501, 0.17778606038017145, 0.20685799478196049, 0.3201639955273947, 0.5475214312336937], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Topoisom_bac.gap.json b/pfam_gap_rates/Topoisom_bac.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71bc7bcfc41a1e716d1111d3d3452ddb5e1ef9ff
--- /dev/null
+++ b/pfam_gap_rates/Topoisom_bac.gap.json
@@ -0,0 +1 @@
+{"family": "Topoisom_bac", "n_seqs": 4376, "length": 526, "gap_rates": [0.9337294332723949, 0.40904936014625226, 0.23377513711151737, 0.1896709323583181, 0.16110603290676417, 0.13139853747714808, 0.12797074954296161, 0.1256855575868373, 0.1236288848263254, 0.12340036563071298, 0.12294332723948811, 0.12271480804387569, 0.12271480804387569, 0.12225776965265082, 0.12202925045703839, 0.12180073126142596, 0.12180073126142596, 0.12545703839122485, 0.12111517367458867, 0.12042961608775136, 0.11997257769652651, 0.11974405850091407, 0.11951553930530165, 0.11951553930530165, 0.11928702010968921, 0.11928702010968921, 0.11928702010968921, 0.11928702010968921, 0.11928702010968921, 0.11928702010968921, 0.7888482632541134, 0.8973948811700183, 0.9444698354661791, 0.9401279707495429, 0.8448354661791591, 0.783363802559415, 0.1853290676416819, 0.26759597806215724, 0.23788848263254114, 0.6403107861060329, 0.8514625228519196, 0.9392138939670932, 0.909963436928702, 0.7479433272394881, 0.5973491773308958, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Toprim_4.gap.json b/pfam_gap_rates/Toprim_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67ab2674429ecd94cd6f6325bf077723fbd8812f
--- /dev/null
+++ b/pfam_gap_rates/Toprim_4.gap.json
@@ -0,0 +1 @@
+{"family": "Toprim_4", "n_seqs": 3214, "length": 100, "gap_rates": [0.7246421904169259, 0.1823273179838208, 0.020846297448662104, 0.0074673304293715, 0.00715619166148102, 0.006222775357809583, 0.005911636589919104, 0.005911636589919104, 0.005600497822028625, 0.004978220286247666, 0.0043559427504667085, 0.00373366521468575, 0.0028002489110143126, 0.0028002489110143126, 0.001866832607342875, 0.001866832607342875, 0.0012445550715619166, 0.0012445550715619166, 0.35749844430616057, 0.0012445550715619166, 0.0012445550715619166, 0.001866832607342875, 0.0015556938394523958, 0.0009334163036714375, 0.0009334163036714375, 0.0012445550715619166, 0.0021779713752333543, 0.001866832607342875, 0.0021779713752333543, 0.004667081518357187, 0.001866832607342875, 0.0021779713752333543, 0.3273179838207841, 0.015245799626633479, 0.008400746733042938, 0.0028002489110143126, 0.00373366521468575, 0.0031113876789047915, 0.004044803982576229, 0.14716863721219664, 0.13690105787181084, 0.004978220286247666, 0.0043559427504667085, 0.006222775357809583, 0.011512134411947728, 0.9309271935283137, 0.2719352831362788, 0.30491599253266954, 0.2937149968886123, 0.2750466708151836, 0.26322339763534536, 0.425326695706285, 0.9004355942750467, 0.9427504667081519, 0.9312383322962041, 0.8606098319850654, 0.33945239576851277, 0.2445550715619166, 0.23273179838207841, 0.2252644679527069, 0.15961418792781581, 0.12601120099564406, 0.006222775357809583, 0.005289359054138146, 0.005289359054138146, 0.004978220286247666, 0.004978220286247666, 0.004978220286247666, 0.005289359054138146, 0.005289359054138146, 0.005911636589919104, 0.005911636589919104, 0.006222775357809583, 0.009956440572495333, 0.010578718108276292, 0.01120099564405725, 0.013067828251400125, 0.015245799626633479, 0.020224019912881145, 0.024579962663347853, 0.02862476664592408, 0.03142501555693839, 0.035158680771624144, 0.04169259489732421, 0.9278158058494088, 0.947417548226509, 0.9138145612943372, 0.13503422526446796, 0.1879278158058494, 0.2868699439950218, 0.2958929682638457, 0.28562538892345984, 0.2912258867454885, 0.29807093963907905, 0.30522713130056006, 0.31269446172993154, 0.3220286247666459, 0.3372744243932794, 0.3705662725575607, 0.49191039203484754], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TpcC.gap.json b/pfam_gap_rates/TpcC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3839f6c9486c3c408ed3382da7d71fea367d2a4
--- /dev/null
+++ b/pfam_gap_rates/TpcC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Transglut_C.gap.json b/pfam_gap_rates/Transglut_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab278d4747cf06bf7e8929d5a78a8995bcfb3e25
--- /dev/null
+++ b/pfam_gap_rates/Transglut_C.gap.json
@@ -0,0 +1 @@
+{"family": "Transglut_C", "n_seqs": 428, "length": 110, "gap_rates": [0.5186915887850467, 0.308411214953271, 0.19626168224299065, 0.1588785046728972, 0.14018691588785046, 0.12149532710280374, 0.11448598130841121, 0.18925233644859812, 0.056074766355140186, 0.0397196261682243, 0.016355140186915886, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.002336448598130841, 0.002336448598130841, 0.004672897196261682, 0.002336448598130841, 0.002336448598130841, 0.002336448598130841, 0.42990654205607476, 0.004672897196261682, 0.002336448598130841, 0.42990654205607476, 0.42990654205607476, 0.4696261682242991, 0.4696261682242991, 0.4696261682242991, 0.07476635514018691, 0.07476635514018691, 0.035046728971962614, 0.03271028037383177, 0.03271028037383177, 0.002336448598130841, 0.007009345794392523, 0.007009345794392523, 0.007009345794392523, 0.0, 0.1425233644859813, 0.4439252336448598, 0.9485981308411215, 0.42289719626168226, 0.1658878504672897, 0.02102803738317757, 0.009345794392523364, 0.007009345794392523, 0.007009345794392523, 0.007009345794392523, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.009345794392523364, 0.011682242990654205, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.016355140186915886, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.4135514018691589, 0.39953271028037385, 0.07242990654205607, 0.07476635514018691, 0.02570093457943925, 0.03271028037383177, 0.06775700934579439, 0.07009345794392523, 0.6518691588785047, 0.6728971962616822, 0.6355140186915887, 0.11214953271028037, 0.08878504672897196, 0.08411214953271028, 0.0514018691588785, 0.0514018691588785, 0.053738317757009345, 0.053738317757009345, 0.056074766355140186, 0.056074766355140186, 0.07242990654205607, 0.08411214953271028, 0.09345794392523364, 0.1191588785046729, 0.17289719626168223, 0.25, 0.3411214953271028, 0.4205607476635514, 0.5934579439252337, 0.8948598130841121], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transposase_31.gap.json b/pfam_gap_rates/Transposase_31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7d507c9de3d486076607684442ba41daa3be8e3
--- /dev/null
+++ b/pfam_gap_rates/Transposase_31.gap.json
@@ -0,0 +1 @@
+{"family": "Transposase_31", "n_seqs": 720, "length": 223, "gap_rates": [0.7652777777777777, 0.5180555555555556, 0.44583333333333336, 0.3888888888888889, 0.3861111111111111, 0.38333333333333336, 0.3763888888888889, 0.37222222222222223, 0.37222222222222223, 0.3680555555555556, 0.35833333333333334, 0.35555555555555557, 0.35555555555555557, 0.3763888888888889, 0.43194444444444446, 0.4097222222222222, 0.35138888888888886, 0.3458333333333333, 0.34305555555555556, 0.3375, 0.3375, 0.33611111111111114, 0.33611111111111114, 0.33611111111111114, 0.3333333333333333, 0.3347222222222222, 0.3458333333333333, 0.3597222222222222, 0.3263888888888889, 0.32916666666666666, 0.31805555555555554, 0.31805555555555554, 0.3236111111111111, 0.30277777777777776, 0.3055555555555556, 0.30416666666666664, 0.3013888888888889, 0.2972222222222222, 0.3, 0.2986111111111111, 0.3, 0.29444444444444445, 0.30694444444444446, 0.3013888888888889, 0.3, 0.2916666666666667, 0.28888888888888886, 0.2847222222222222, 0.28055555555555556, 0.2847222222222222, 0.2847222222222222, 0.26944444444444443, 0.25555555555555554, 0.24861111111111112, 0.24305555555555555, 0.24305555555555555, 0.2375, 0.2361111111111111, 0.2388888888888889, 0.2361111111111111, 0.2361111111111111, 0.24166666666666667, 0.24027777777777778, 0.2375, 0.2388888888888889, 0.5638888888888889, 0.41805555555555557, 0.24722222222222223, 0.22916666666666666, 0.2152777777777778, 0.19305555555555556, 0.19305555555555556, 0.17777777777777778, 0.16805555555555557, 0.13333333333333333, 0.1361111111111111, 0.13472222222222222, 0.1375, 0.1388888888888889, 0.1361111111111111, 0.1361111111111111, 0.1375, 0.1375, 0.1375, 0.13194444444444445, 0.13055555555555556, 0.13194444444444445, 0.13194444444444445, 0.13055555555555556, 0.12916666666666668, 0.13055555555555556, 0.13055555555555556, 0.13055555555555556, 0.1388888888888889, 0.14166666666666666, 0.13194444444444445, 0.12916666666666668, 0.12777777777777777, 0.9402777777777778, 0.9458333333333333, 0.9305555555555556, 0.18194444444444444, 0.24861111111111112, 0.24166666666666667, 0.26805555555555555, 0.2625, 0.7583333333333333, 0.8319444444444445, 0.875, 0.9069444444444444, 0.85, 0.7819444444444444, 0.6805555555555556, 0.23194444444444445, 0.20833333333333334, 0.1986111111111111, 0.19166666666666668, 0.3875, 0.2, 0.18611111111111112, 0.21388888888888888, 0.17777777777777778, 0.175, 0.16527777777777777, 0.16111111111111112, 0.16527777777777777, 0.16805555555555557, 0.1736111111111111, 0.17777777777777778, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.18194444444444444, 0.8486111111111111, 0.17916666666666667, 0.18194444444444444, 0.19722222222222222, 0.18472222222222223, 0.18194444444444444, 0.18611111111111112, 0.18611111111111112, 0.19027777777777777, 0.19305555555555556, 0.19444444444444445, 0.2, 0.2013888888888889, 0.3958333333333333, 0.8430555555555556, 0.9055555555555556, 0.8666666666666667, 0.6916666666666667, 0.28055555555555556, 0.2777777777777778, 0.26805555555555555, 0.2638888888888889, 0.2388888888888889, 0.23194444444444445, 0.22361111111111112, 0.22777777777777777, 0.2263888888888889, 0.2222222222222222, 0.22083333333333333, 0.2222222222222222, 0.2222222222222222, 0.22361111111111112, 0.2222222222222222, 0.22777777777777777, 0.23055555555555557, 0.22916666666666666, 0.22916666666666666, 0.23194444444444445, 0.2375, 0.24444444444444444, 0.24444444444444444, 0.25, 0.24583333333333332, 0.25, 0.25, 0.25555555555555554, 0.25972222222222224, 0.26666666666666666, 0.3125, 0.8736111111111111, 0.9027777777777778, 0.7263888888888889, 0.2916666666666667, 0.2986111111111111, 0.3, 0.3, 0.3055555555555556, 0.30972222222222223, 0.32222222222222224, 0.33055555555555555, 0.34305555555555556, 0.35555555555555557, 0.3611111111111111, 0.3680555555555556, 0.41388888888888886, 0.4166666666666667, 0.8416666666666667, 0.4083333333333333, 0.4083333333333333, 0.4263888888888889, 0.4375, 0.44583333333333336, 0.4625, 0.46805555555555556, 0.4736111111111111, 0.48194444444444445, 0.49027777777777776, 0.5013888888888889, 0.5111111111111111, 0.5263888888888889, 0.5402777777777777, 0.5652777777777778, 0.5986111111111111, 0.6444444444444445, 0.6944444444444444, 0.7472222222222222, 0.7930555555555555, 0.8347222222222223, 0.8958333333333334, 0.9486111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transposon_TraM.gap.json b/pfam_gap_rates/Transposon_TraM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2fe26550ce6c13faa1c5a68a3c7e0547cb6fd813
--- /dev/null
+++ b/pfam_gap_rates/Transposon_TraM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TrbL.gap.json b/pfam_gap_rates/TrbL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf7af7f12056a52d0d13959155214c92fc365a82
--- /dev/null
+++ b/pfam_gap_rates/TrbL.gap.json
@@ -0,0 +1 @@
+{"family": "TrbL", "n_seqs": 485, "length": 254, "gap_rates": [0.534020618556701, 0.3422680412371134, 0.2865979381443299, 0.2721649484536082, 0.2556701030927835, 0.24329896907216494, 0.24123711340206186, 0.23505154639175257, 0.2329896907216495, 0.2329896907216495, 0.2309278350515464, 0.2309278350515464, 0.2288659793814433, 0.22474226804123712, 0.8680412371134021, 0.8329896907216495, 0.22061855670103092, 0.21443298969072164, 0.2329896907216495, 0.1979381443298969, 0.18144329896907216, 0.17525773195876287, 0.1711340206185567, 0.16082474226804125, 0.15257731958762888, 0.13195876288659794, 0.12989690721649486, 0.13195876288659794, 0.12989690721649486, 0.12577319587628866, 0.12783505154639174, 0.12577319587628866, 0.12371134020618557, 0.12371134020618557, 0.12164948453608247, 0.12164948453608247, 0.11958762886597939, 0.11958762886597939, 0.12164948453608247, 0.13402061855670103, 0.12783505154639174, 0.12164948453608247, 0.9298969072164949, 0.9278350515463918, 0.13814432989690723, 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\ No newline at end of file
diff --git a/pfam_gap_rates/TrmK.gap.json b/pfam_gap_rates/TrmK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eca774c2c2806872209b5231b977d656b318b45d
--- /dev/null
+++ b/pfam_gap_rates/TrmK.gap.json
@@ -0,0 +1 @@
+{"family": "TrmK", "n_seqs": 254, "length": 227, "gap_rates": [0.07874015748031496, 0.04330708661417323, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03937007874015748, 0.03937007874015748, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03937007874015748, 0.047244094488188976, 0.04330708661417323, 0.04330708661417323, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.051181102362204724, 0.05511811023622047, 0.5236220472440944, 0.031496062992125984, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.031496062992125984, 0.051181102362204724, 0.03937007874015748, 0.03937007874015748, 0.047244094488188976, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.03937007874015748, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.12598425196850394, 0.15354330708661418, 0.9488188976377953, 0.8385826771653543, 0.2795275590551181, 0.7637795275590551, 0.8661417322834646, 0.8976377952755905, 0.9133858267716536, 0.9173228346456693, 0.9173228346456693, 0.9291338582677166, 0.9409448818897638, 0.9291338582677166, 0.9251968503937008, 0.9173228346456693, 0.9133858267716536, 0.9133858267716536, 0.8779527559055118, 0.7992125984251969, 0.7519685039370079, 0.35039370078740156, 0.05511811023622047, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.011811023622047244, 0.011811023622047244, 0.011811023622047244, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.01968503937007874, 0.01968503937007874, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.01968503937007874, 0.023622047244094488, 0.027559055118110236, 0.027559055118110236, 0.023622047244094488, 0.023622047244094488, 0.027559055118110236, 0.027559055118110236, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.04330708661417323, 0.03937007874015748, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.03937007874015748, 0.04330708661417323, 0.051181102362204724, 0.051181102362204724, 0.2952755905511811, 0.7795275590551181, 0.5511811023622047, 0.27165354330708663, 0.04330708661417323, 0.06299212598425197, 0.07480314960629922, 0.10236220472440945, 0.1062992125984252, 0.14173228346456693, 0.1141732283464567, 0.11023622047244094, 0.1220472440944882, 0.12598425196850394, 0.1377952755905512, 0.14960629921259844, 0.18110236220472442, 0.2047244094488189, 0.20866141732283464, 0.24803149606299213, 0.3110236220472441, 0.37401574803149606, 0.48031496062992124, 0.8188976377952756], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TruD.gap.json b/pfam_gap_rates/TruD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0a565ea798409e02596df3ff3fed6e0bd322917
--- /dev/null
+++ b/pfam_gap_rates/TruD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tubulin_3.gap.json b/pfam_gap_rates/Tubulin_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e5e8b467bf8c49bb26aaa3c10d79406dd5c8a31
--- /dev/null
+++ b/pfam_gap_rates/Tubulin_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/U3_assoc_6.gap.json b/pfam_gap_rates/U3_assoc_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fead3dc253f720f5ed2f738dac96e2b39a067f92
--- /dev/null
+++ b/pfam_gap_rates/U3_assoc_6.gap.json
@@ -0,0 +1 @@
+{"family": "U3_assoc_6", "n_seqs": 307, "length": 90, "gap_rates": [0.22149837133550487, 0.09771986970684039, 0.09120521172638436, 0.06840390879478828, 0.06840390879478828, 0.06840390879478828, 0.06840390879478828, 0.06514657980456026, 0.06188925081433225, 0.06188925081433225, 0.05537459283387622, 0.05537459283387622, 0.05537459283387622, 0.05863192182410423, 0.05537459283387622, 0.048859934853420196, 0.035830618892508145, 0.026058631921824105, 0.013029315960912053, 0.009771986970684038, 0.006514657980456026, 0.006514657980456026, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.006514657980456026, 0.006514657980456026, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.019543973941368076, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006514657980456026, 0.006514657980456026, 0.009771986970684038, 0.009771986970684038, 0.009771986970684038, 0.009771986970684038, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.026058631921824105, 0.026058631921824105, 0.03257328990228013, 0.035830618892508145, 0.035830618892508145, 0.04560260586319218, 0.06840390879478828, 0.08469055374592833, 0.09120521172638436, 0.7915309446254072, 0.8566775244299675, 0.9315960912052117, 0.8143322475570033, 0.6644951140065146, 0.38436482084690554, 0.4495114006514658, 0.3745928338762215, 0.4201954397394137, 0.43973941368078173, 0.5146579804560261, 0.5211726384364821, 0.5439739413680782, 0.9478827361563518, 0.9478827361563518, 0.5570032573289903, 0.5667752442996743, 0.5732899022801303, 0.5798045602605864, 0.6026058631921825, 0.6482084690553745], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UCR_Fe-S_N.gap.json b/pfam_gap_rates/UCR_Fe-S_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e13ee61247c799a2f012952e68910d92b7afc6fe
--- /dev/null
+++ b/pfam_gap_rates/UCR_Fe-S_N.gap.json
@@ -0,0 +1 @@
+{"family": "UCR_Fe-S_N", "n_seqs": 455, "length": 41, "gap_rates": [0.8307692307692308, 0.7428571428571429, 0.5582417582417583, 0.3384615384615385, 0.2175824175824176, 0.12747252747252746, 0.08131868131868132, 0.046153846153846156, 0.03736263736263736, 0.026373626373626374, 0.02197802197802198, 0.013186813186813187, 0.013186813186813187, 0.01978021978021978, 0.013186813186813187, 0.12307692307692308, 0.013186813186813187, 0.013186813186813187, 0.006593406593406593, 0.008791208791208791, 0.004395604395604396, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.008791208791208791, 0.01098901098901099, 0.01098901098901099, 0.017582417582417582, 0.017582417582417582, 0.024175824175824177, 0.026373626373626374, 0.06593406593406594], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0182.gap.json b/pfam_gap_rates/UPF0182.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7806a154e3e89b8a13d1db65e5146cdc23a3b28e
--- /dev/null
+++ b/pfam_gap_rates/UPF0182.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0203.gap.json b/pfam_gap_rates/UPF0203.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6884af53019f73aed3c28d81760534009946e615
--- /dev/null
+++ b/pfam_gap_rates/UPF0203.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0203", "n_seqs": 255, "length": 90, "gap_rates": [0.6235294117647059, 0.30980392156862746, 0.2235294117647059, 0.2, 0.13725490196078433, 0.06666666666666667, 0.050980392156862744, 0.043137254901960784, 0.043137254901960784, 0.043137254901960784, 0.03529411764705882, 0.03137254901960784, 0.023529411764705882, 0.01568627450980392, 0.011764705882352941, 0.011764705882352941, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00392156862745098, 0.12941176470588237, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.9019607843137255, 0.8823529411764706, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.8509803921568627, 0.0196078431372549, 0.023529411764705882, 0.0196078431372549, 0.0196078431372549, 0.01568627450980392, 0.011764705882352941, 0.00784313725490196, 0.00784313725490196, 0.00392156862745098, 0.1450980392156863, 0.7176470588235294, 0.9137254901960784, 0.9019607843137255, 0.6274509803921569, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00392156862745098, 0.00784313725490196, 0.00784313725490196, 0.00392156862745098, 0.00392156862745098, 0.00784313725490196, 0.01568627450980392, 0.01568627450980392, 0.050980392156862744, 0.058823529411764705, 0.058823529411764705, 0.06666666666666667, 0.07450980392156863, 0.11372549019607843, 0.13725490196078433, 0.1568627450980392, 0.9215686274509803, 0.9215686274509803, 0.9215686274509803, 0.8980392156862745, 0.27058823529411763, 0.3254901960784314, 0.39215686274509803, 0.42745098039215684, 0.4470588235294118, 0.5176470588235295, 0.5568627450980392, 0.7019607843137254], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0262.gap.json b/pfam_gap_rates/UPF0262.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c0ad5ee0b0c939d1facf29b2b20b06e8cce742f
--- /dev/null
+++ b/pfam_gap_rates/UPF0262.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0262", "n_seqs": 169, "length": 158, "gap_rates": [0.22485207100591717, 0.09467455621301775, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.023668639053254437, 0.1301775147928994, 0.023668639053254437, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.011834319526627219, 0.7751479289940828, 0.05917159763313609, 0.5798816568047337, 0.6331360946745562, 0.7633136094674556, 0.6035502958579881, 0.5798816568047337, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.03550295857988166, 0.03550295857988166, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005917159763313609, 0.0, 0.0, 0.0, 0.005917159763313609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.029585798816568046, 0.08284023668639054, 0.3136094674556213], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/URO-D.gap.json b/pfam_gap_rates/URO-D.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57937228390915fcf663e2b8c28db4c75bd6d147
--- /dev/null
+++ b/pfam_gap_rates/URO-D.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/USP8_dimer.gap.json b/pfam_gap_rates/USP8_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c2f7528def1ddf148dd7c07c9bda436ab1a3b8c
--- /dev/null
+++ b/pfam_gap_rates/USP8_dimer.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UT.gap.json b/pfam_gap_rates/UT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ffdced88bcbe00646a5295a6d5c579bf95fbf2c
--- /dev/null
+++ b/pfam_gap_rates/UT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UbiD.gap.json b/pfam_gap_rates/UbiD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bd658e0819108e18a77e63cb81cfb60e5b075e3
--- /dev/null
+++ b/pfam_gap_rates/UbiD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ubiquitin_2.gap.json b/pfam_gap_rates/Ubiquitin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9b4821beeb828babab712872c45780e4833b08d
--- /dev/null
+++ b/pfam_gap_rates/Ubiquitin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Ubiquitin_2", "n_seqs": 477, "length": 93, "gap_rates": [0.7589098532494759, 0.46331236897274636, 0.4192872117400419, 0.37735849056603776, 0.3689727463312369, 0.36477987421383645, 0.36058700209643607, 0.35429769392033544, 0.3417190775681342, 0.31865828092243187, 0.3312368972746331, 0.570230607966457, 0.6415094339622641, 0.9077568134171907, 0.4612159329140461, 0.20754716981132076, 0.1761006289308176, 0.15513626834381553, 0.1111111111111111, 0.08385744234800839, 0.06708595387840671, 0.06708595387840671, 0.05870020964360587, 0.05450733752620545, 0.04821802935010482, 0.04821802935010482, 0.0440251572327044, 0.041928721174004195, 0.041928721174004195, 0.041928721174004195, 0.039832285115303984, 0.031446540880503145, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.027253668763102725, 0.027253668763102725, 0.027253668763102725, 0.027253668763102725, 0.027253668763102725, 0.018867924528301886, 0.020964360587002098, 0.020964360587002098, 0.020964360587002098, 0.029350104821802937, 0.9245283018867925, 0.033542976939203356, 0.6058700209643606, 0.20964360587002095, 0.09643605870020965, 0.0859538784067086, 0.0880503144654088, 0.09224318658280922, 0.09224318658280922, 0.0880503144654088, 0.09014675052410902, 0.09433962264150944, 0.09224318658280922, 0.859538784067086, 0.949685534591195, 0.909853249475891, 0.7861635220125787, 0.1111111111111111, 0.12368972746331237, 0.13626834381551362, 0.11949685534591195, 0.12159329140461216, 0.1278825995807128, 0.129979035639413, 0.14255765199161424, 0.1509433962264151, 0.1530398322851153, 0.15513626834381553, 0.16771488469601678, 0.16981132075471697, 0.1719077568134172, 0.1740041928721174, 0.1928721174004193, 0.19916142557651992, 0.19916142557651992, 0.2222222222222222, 0.24109014675052412, 0.28721174004192873, 0.33752620545073375, 0.3668763102725367, 0.39622641509433965, 0.48846960167714887, 0.6415094339622641, 0.8469601677148847], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Upf2.gap.json b/pfam_gap_rates/Upf2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1606c52879c84a75d0ffe5fbb2179c76297913f
--- /dev/null
+++ b/pfam_gap_rates/Upf2.gap.json
@@ -0,0 +1 @@
+{"family": "Upf2", "n_seqs": 258, "length": 157, "gap_rates": [0.8527131782945736, 0.6007751937984496, 0.5310077519379846, 0.4883720930232558, 0.4689922480620155, 0.9302325581395349, 0.43410852713178294, 0.43023255813953487, 0.4069767441860465, 0.4186046511627907, 0.24031007751937986, 0.35658914728682173, 0.4806201550387597, 0.937984496124031, 0.5736434108527132, 0.41472868217054265, 0.32170542635658916, 0.2131782945736434, 0.06976744186046512, 0.6124031007751938, 0.8217054263565892, 0.8643410852713178, 0.6821705426356589, 0.5775193798449613, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.04263565891472868, 0.04263565891472868, 0.046511627906976744, 0.046511627906976744, 0.8837209302325582, 0.07751937984496124, 0.06589147286821706, 0.05813953488372093, 0.050387596899224806, 0.04263565891472868, 0.04263565891472868, 0.050387596899224806, 0.05426356589147287, 0.9457364341085271, 0.16279069767441862, 0.4883720930232558, 0.4069767441860465, 0.2751937984496124, 0.08139534883720931, 0.9031007751937985, 0.6705426356589147, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.027131782945736434, 0.5465116279069767, 0.6666666666666666, 0.7403100775193798, 0.7984496124031008, 0.8372093023255814, 0.9031007751937985, 0.937984496124031, 0.9418604651162791, 0.9069767441860465, 0.8914728682170543, 0.8255813953488372, 0.7751937984496124, 0.7015503875968992, 0.5891472868217055, 0.40310077519379844, 0.2054263565891473, 0.9069767441860465, 0.6162790697674418, 0.4689922480620155, 0.375968992248062, 0.3449612403100775, 0.23255813953488372, 0.20155038759689922, 0.16279069767441862, 0.09689922480620156, 0.10852713178294573, 0.09302325581395349, 0.06201550387596899, 0.046511627906976744, 0.05426356589147287, 0.046511627906976744, 0.027131782945736434, 0.031007751937984496, 0.05426356589147287, 0.05426356589147287, 0.050387596899224806, 0.027131782945736434, 0.023255813953488372, 0.031007751937984496, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.872093023255814, 0.015503875968992248, 0.01937984496124031, 0.031007751937984496, 0.03875968992248062, 0.04263565891472868, 0.03488372093023256, 0.023255813953488372, 0.027131782945736434, 0.023255813953488372, 0.023255813953488372, 0.01937984496124031, 0.01937984496124031, 0.03875968992248062, 0.023255813953488372, 0.03488372093023256, 0.03488372093023256, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.023255813953488372, 0.027131782945736434, 0.027131782945736434, 0.03488372093023256, 0.03875968992248062, 0.050387596899224806, 0.24031007751937986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Usg.gap.json b/pfam_gap_rates/Usg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70bec18315a2fa33475e624d883e8481a1b3aab6
--- /dev/null
+++ b/pfam_gap_rates/Usg.gap.json
@@ -0,0 +1 @@
+{"family": "Usg", "n_seqs": 113, "length": 80, "gap_rates": [0.12389380530973451, 0.017699115044247787, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.017699115044247787, 0.035398230088495575, 0.05309734513274336, 0.09734513274336283, 0.12389380530973451, 0.1592920353982301, 0.6017699115044248], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Usp.gap.json b/pfam_gap_rates/Usp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a5cb45859fac9ab9489959ef8a573366e1532f4
--- /dev/null
+++ b/pfam_gap_rates/Usp.gap.json
@@ -0,0 +1 @@
+{"family": "Usp", "n_seqs": 5000, "length": 159, "gap_rates": [0.8154, 0.6624, 0.4038, 0.2532, 0.1504, 0.123, 0.1178, 0.1162, 0.1136, 0.1238, 0.1102, 0.1052, 0.1024, 0.1012, 0.0984, 0.0936, 0.0896, 0.088, 0.0866, 0.0864, 0.0848, 0.0834, 0.083, 0.082, 0.9404, 0.0834, 0.09, 0.0884, 0.085, 0.9238, 0.1026, 0.1138, 0.099, 0.0874, 0.0884, 0.0854, 0.0826, 0.0758, 0.0766, 0.0754, 0.0784, 0.0758, 0.0764, 0.0776, 0.0774, 0.0786, 0.0792, 0.0792, 0.0792, 0.0772, 0.0772, 0.0758, 0.0752, 0.0768, 0.0768, 0.0776, 0.0766, 0.0758, 0.0752, 0.0752, 0.0738, 0.075, 0.0756, 0.076, 0.0778, 0.1014, 0.1498, 0.1598, 0.212, 0.2848, 0.3194, 0.4008, 0.6532, 0.7372, 0.8088, 0.8632, 0.8926, 0.9166, 0.9368, 0.948, 0.93, 0.9076, 0.8768, 0.8398, 0.7756, 0.6928, 0.6004, 0.4646, 0.3582, 0.2796, 0.2422, 0.2134, 0.1738, 0.1406, 0.1088, 0.0828, 0.069, 0.0596, 0.0494, 0.0434, 0.0364, 0.0342, 0.0328, 0.0308, 0.0294, 0.0276, 0.0256, 0.0246, 0.0236, 0.023, 0.0298, 0.0302, 0.0252, 0.0246, 0.0288, 0.0308, 0.03, 0.0336, 0.074, 0.0596, 0.0234, 0.0218, 0.021, 0.0208, 0.0204, 0.0204, 0.0204, 0.0206, 0.022, 0.0244, 0.9342, 0.093, 0.0472, 0.04, 0.0456, 0.0422, 0.0546, 0.0994, 0.0736, 0.0584, 0.0586, 0.056, 0.0566, 0.0576, 0.0594, 0.0602, 0.0608, 0.0628, 0.0646, 0.0716, 0.0772, 0.0926, 0.1094, 0.1128, 0.1156, 0.1204, 0.1438, 0.2252, 0.3456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UvrD_C_2.gap.json b/pfam_gap_rates/UvrD_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f048d1989ad11f5288a06c66df2ef268d6af564
--- /dev/null
+++ b/pfam_gap_rates/UvrD_C_2.gap.json
@@ -0,0 +1 @@
+{"family": "UvrD_C_2", "n_seqs": 2478, "length": 56, "gap_rates": [0.7893462469733656, 0.26674737691686845, 0.19289749798224373, 0.11501210653753027, 0.0924132364810331, 0.08030669895076675, 0.06698950766747377, 0.045601291364003226, 0.026634382566585957, 0.006860371267150928, 0.002421307506053269, 0.0020177562550443904, 0.0020177562550443904, 0.0020177562550443904, 0.0020177562550443904, 0.0016142050040355124, 0.0016142050040355124, 0.0012106537530266344, 0.0012106537530266344, 0.0012106537530266344, 0.3728813559322034, 0.3611783696529459, 0.023809523809523808, 0.013317191283292978, 0.9386602098466506, 0.006860371267150928, 0.007263922518159807, 0.00443906376109766, 0.023405972558514933, 0.0480225988700565, 0.4612590799031477, 0.2804681194511703, 0.32405165456012913, 0.26472962066182404, 0.9293785310734464, 0.9459241323648103, 0.9063761097659403, 0.0847457627118644, 0.02784503631961259, 0.027037933817594836, 0.006053268765133172, 0.002421307506053269, 0.0016142050040355124, 0.0020177562550443904, 0.002421307506053269, 0.002824858757062147, 0.002824858757062147, 0.002824858757062147, 0.00443906376109766, 0.00645682001614205, 0.018966908797417272, 0.05447941888619855, 0.06739305891848264, 0.1311541565778854, 0.16142050040355124, 0.4870863599677159], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VESA1_N.gap.json b/pfam_gap_rates/VESA1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07a0a3ac2e8c61cad2e5d07d85dd5ec4877e9be2
--- /dev/null
+++ b/pfam_gap_rates/VESA1_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VPS11_C.gap.json b/pfam_gap_rates/VPS11_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c02fda79044f40c379f60dd9993b756f1a63284f
--- /dev/null
+++ b/pfam_gap_rates/VPS11_C.gap.json
@@ -0,0 +1 @@
+{"family": "VPS11_C", "n_seqs": 238, "length": 48, "gap_rates": [0.36134453781512604, 0.15966386554621848, 0.12184873949579832, 0.08823529411764706, 0.058823529411764705, 0.046218487394957986, 0.04201680672268908, 0.037815126050420166, 0.025210084033613446, 0.02100840336134454, 0.02100840336134454, 0.02100840336134454, 0.02100840336134454, 0.012605042016806723, 0.9453781512605042, 0.01680672268907563, 0.01680672268907563, 0.02100840336134454, 0.004201680672268907, 0.004201680672268907, 0.004201680672268907, 0.004201680672268907, 0.004201680672268907, 0.004201680672268907, 0.0, 0.0, 0.0, 0.0, 0.9453781512605042, 0.9369747899159664, 0.10084033613445378, 0.10504201680672269, 0.004201680672268907, 0.004201680672268907, 0.004201680672268907, 0.004201680672268907, 0.012605042016806723, 0.01680672268907563, 0.01680672268907563, 0.025210084033613446, 0.025210084033613446, 0.029411764705882353, 0.029411764705882353, 0.03361344537815126, 0.046218487394957986, 0.05042016806722689, 0.06302521008403361, 0.49159663865546216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VPS9.gap.json b/pfam_gap_rates/VPS9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20f4754191a7ac222ccc4839f2fcf33cfb684d05
--- /dev/null
+++ b/pfam_gap_rates/VPS9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VSG_B.gap.json b/pfam_gap_rates/VSG_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..578a903e09ce9217ae442890210b009605c11256
--- /dev/null
+++ b/pfam_gap_rates/VSG_B.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VWA_CoxE.gap.json b/pfam_gap_rates/VWA_CoxE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b91a84204156a6c00fe042c1c27067a0f1f3d3d
--- /dev/null
+++ b/pfam_gap_rates/VWA_CoxE.gap.json
@@ -0,0 +1 @@
+{"family": "VWA_CoxE", "n_seqs": 1038, "length": 243, "gap_rates": [0.9152215799614644, 0.7726396917148363, 0.7023121387283237, 0.6551059730250481, 0.5799614643545279, 0.5269749518304432, 0.4951830443159923, 0.45375722543352603, 0.394990366088632, 0.3227360308285164, 0.1994219653179191, 0.17148362235067438, 0.15510597302504817, 0.1464354527938343, 0.13872832369942195, 0.1531791907514451, 0.628131021194605, 0.40847784200385356, 0.1811175337186898, 0.1464354527938343, 0.11560693641618497, 0.10982658959537572, 0.10886319845857419, 0.1069364161849711, 0.10500963391136801, 0.10404624277456648, 0.10115606936416185, 0.10115606936416185, 0.10115606936416185, 0.10115606936416185, 0.10115606936416185, 0.1001926782273603, 0.1001926782273603, 0.09922928709055877, 0.09922928709055877, 0.09922928709055877, 0.09922928709055877, 0.09826589595375723, 0.09826589595375723, 0.09633911368015415, 0.10115606936416185, 0.09922928709055877, 0.09633911368015415, 0.12620423892100194, 0.7947976878612717, 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\ No newline at end of file
diff --git a/pfam_gap_rates/VipB.gap.json b/pfam_gap_rates/VipB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ceaf176e762dc53bbd58d9c1f862f68d7ca34ace
--- /dev/null
+++ b/pfam_gap_rates/VipB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vma12.gap.json b/pfam_gap_rates/Vma12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18fe90dd5a18e38935fda3fd315038a998f44a1a
--- /dev/null
+++ b/pfam_gap_rates/Vma12.gap.json
@@ -0,0 +1 @@
+{"family": "Vma12", "n_seqs": 266, "length": 166, "gap_rates": [0.6240601503759399, 0.3458646616541353, 0.31203007518796994, 0.30451127819548873, 0.29699248120300753, 0.2932330827067669, 0.2857142857142857, 0.2819548872180451, 0.2894736842105263, 0.2518796992481203, 0.2518796992481203, 0.24060150375939848, 0.23684210526315788, 0.9398496240601504, 0.2932330827067669, 0.2857142857142857, 0.21052631578947367, 0.21804511278195488, 0.21428571428571427, 0.29699248120300753, 0.15413533834586465, 0.14285714285714285, 0.13909774436090225, 0.13909774436090225, 0.13909774436090225, 0.13533834586466165, 0.13157894736842105, 0.12406015037593984, 0.12030075187969924, 0.12030075187969924, 0.12030075187969924, 0.12030075187969924, 0.12030075187969924, 0.12030075187969924, 0.09774436090225563, 0.09774436090225563, 0.09398496240601503, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.08646616541353383, 0.08646616541353383, 0.08646616541353383, 0.08646616541353383, 0.08646616541353383, 0.08646616541353383, 0.12781954887218044, 0.13909774436090225, 0.22932330827067668, 0.22556390977443608, 0.19548872180451127, 0.22932330827067668, 0.30451127819548873, 0.2819548872180451, 0.2556390977443609, 0.2593984962406015, 0.2556390977443609, 0.2669172932330827, 0.8120300751879699, 0.7255639097744361, 0.7142857142857143, 0.5939849624060151, 0.7481203007518797, 0.7556390977443609, 0.7631578947368421, 0.7669172932330827, 0.7781954887218046, 0.7894736842105263, 0.793233082706767, 0.8082706766917294, 0.8345864661654135, 0.9172932330827067, 0.9398496240601504, 0.8909774436090225, 0.8157894736842105, 0.8007518796992481, 0.7894736842105263, 0.7819548872180451, 0.7744360902255639, 0.7631578947368421, 0.7631578947368421, 0.7518796992481203, 0.7481203007518797, 0.5037593984962406, 0.46616541353383456, 0.41729323308270677, 0.21804511278195488, 0.849624060150376, 0.943609022556391, 0.7518796992481203, 0.42105263157894735, 0.34962406015037595, 0.31203007518796994, 0.10526315789473684, 0.09398496240601503, 0.09022556390977443, 0.08646616541353383, 0.06390977443609022, 0.05263157894736842, 0.045112781954887216, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.015037593984962405, 0.37218045112781956, 0.2819548872180451, 0.37593984962406013, 0.8120300751879699, 0.8571428571428571, 0.7142857142857143, 0.03007518796992481, 0.03759398496240601, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03383458646616541, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.045112781954887216, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.04887218045112782, 0.05263157894736842, 0.05263157894736842, 0.06390977443609022, 0.07142857142857142, 0.07142857142857142, 0.12406015037593984, 0.19172932330827067, 0.24060150375939848, 0.2819548872180451, 0.39473684210526316, 0.4774436090225564, 0.5338345864661654, 0.5939849624060151, 0.6842105263157895, 0.7481203007518797], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vps54_N.gap.json b/pfam_gap_rates/Vps54_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e7dad56573dff62ec0f5218c54c74b961723e52
--- /dev/null
+++ b/pfam_gap_rates/Vps54_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vut_1.gap.json b/pfam_gap_rates/Vut_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08b05ec990077e53567995efbaf4e27ad5f0864d
--- /dev/null
+++ b/pfam_gap_rates/Vut_1.gap.json
@@ -0,0 +1 @@
+{"family": "Vut_1", "n_seqs": 965, "length": 197, "gap_rates": [0.48911917098445595, 0.13678756476683937, 0.11813471502590674, 0.11191709844559586, 0.10880829015544041, 0.1077720207253886, 0.10466321243523316, 0.10155440414507771, 0.10051813471502591, 0.09948186528497409, 0.09948186528497409, 0.09844559585492228, 0.09637305699481866, 0.09637305699481866, 0.09637305699481866, 0.09533678756476684, 0.09430051813471503, 0.09430051813471503, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.09119170984455958, 0.09119170984455958, 0.09119170984455958, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.0922279792746114, 0.09119170984455958, 0.09119170984455958, 0.09119170984455958, 0.0922279792746114, 0.10051813471502591, 0.8746113989637305, 0.10259067357512953, 0.10362694300518134, 0.11088082901554404, 0.1305699481865285, 0.14715025906735751, 0.14715025906735751, 0.14300518134715026, 0.14818652849740932, 0.14922279792746113, 0.14715025906735751, 0.14715025906735751, 0.14196891191709846, 0.24870466321243523, 0.2911917098445596, 0.31813471502590673, 0.7347150259067358, 0.8621761658031089, 0.9119170984455959, 0.9181347150259067, 0.9326424870466321, 0.9419689119170984, 0.9253886010362694, 0.9150259067357513, 0.9056994818652849, 0.8341968911917098, 0.34818652849740933, 0.3139896373056995, 0.24870466321243523, 0.22176165803108808, 0.2155440414507772, 0.20621761658031088, 0.19585492227979276, 0.18031088082901556, 0.16476683937823836, 0.14922279792746113, 0.14093264248704662, 0.09844559585492228, 0.08290155440414508, 0.06735751295336788, 0.054922279792746116, 0.0538860103626943, 0.05284974093264249, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05077720207253886, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.05181347150259067, 0.33575129533678755, 0.32538860103626943, 0.322279792746114, 0.22694300518134716, 0.12435233160621761, 0.05595854922279793, 0.0538860103626943, 0.8746113989637305, 0.049740932642487044, 0.049740932642487044, 0.05284974093264249, 0.04870466321243523, 0.04766839378238342, 0.04766839378238342, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.046632124352331605, 0.04766839378238342, 0.04766839378238342, 0.04766839378238342, 0.04870466321243523, 0.1378238341968912, 0.06424870466321243, 0.10984455958549223, 0.1844559585492228, 0.5989637305699482, 0.8, 0.8663212435233161, 0.8860103626943006, 0.9036269430051813, 0.9119170984455959, 0.9139896373056995, 0.9150259067357513, 0.917098445595855, 0.9181347150259067, 0.9212435233160622, 0.9367875647668393, 0.9202072538860103, 0.917098445595855, 0.9160621761658031, 0.9139896373056995, 0.9139896373056995, 0.9077720207253887, 0.8860103626943006, 0.8787564766839379, 0.8466321243523316, 0.7170984455958549, 0.550259067357513, 0.17512953367875647, 0.07150259067357513, 0.06632124352331606, 0.054922279792746116, 0.054922279792746116, 0.0538860103626943, 0.0538860103626943, 0.05284974093264249, 0.0538860103626943, 0.054922279792746116, 0.054922279792746116, 0.054922279792746116, 0.054922279792746116, 0.05595854922279793, 0.05699481865284974, 0.05595854922279793, 0.05595854922279793, 0.05699481865284974, 0.05906735751295337, 0.06217616580310881, 0.06321243523316063, 0.06424870466321243, 0.7968911917098446, 0.07046632124352331, 0.08186528497409326, 0.09015544041450778, 0.10569948186528498, 0.14507772020725387, 0.19585492227979276, 0.3544041450777202, 0.844559585492228], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WASH-7_C.gap.json b/pfam_gap_rates/WASH-7_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a7b9d98bbf3a7efd42cfb968ffdac9920de2e60
--- /dev/null
+++ b/pfam_gap_rates/WASH-7_C.gap.json
@@ -0,0 +1 @@
+{"family": "WASH-7_C", "n_seqs": 116, "length": 190, "gap_rates": [0.45689655172413796, 0.3793103448275862, 0.25, 0.23275862068965517, 0.22413793103448276, 0.21551724137931033, 0.19827586206896552, 0.1896551724137931, 0.1724137931034483, 0.16379310344827586, 0.14655172413793102, 0.13793103448275862, 0.12931034482758622, 0.12931034482758622, 0.13793103448275862, 0.12931034482758622, 0.1206896551724138, 0.10344827586206896, 0.10344827586206896, 0.09482758620689655, 0.09482758620689655, 0.08620689655172414, 0.07758620689655173, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.0603448275862069, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.05172413793103448, 0.04310344827586207, 0.07758620689655173, 0.8275862068965517, 0.0603448275862069, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.034482758620689655, 0.034482758620689655, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.034482758620689655, 0.034482758620689655, 0.13793103448275862, 0.02586206896551724, 0.02586206896551724, 0.04310344827586207, 0.8793103448275862, 0.8017241379310345, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.04310344827586207, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.05172413793103448, 0.05172413793103448, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.06896551724137931, 0.06896551724137931, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.5603448275862069, 0.5517241379310345, 0.5431034482758621, 0.49137931034482757, 0.49137931034482757, 0.21551724137931033, 0.22413793103448276, 0.19827586206896552, 0.21551724137931033, 0.25862068965517243, 0.3275862068965517, 0.25, 0.23275862068965517, 0.19827586206896552, 0.1896551724137931, 0.22413793103448276, 0.8275862068965517, 0.8275862068965517, 0.853448275862069, 0.8620689655172413, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9051724137931034, 0.853448275862069, 0.8275862068965517, 0.8275862068965517, 0.8189655172413793, 0.1896551724137931, 0.20689655172413793, 0.21551724137931033, 0.21551724137931033, 0.2413793103448276, 0.1724137931034483, 0.1206896551724138, 0.1206896551724138, 0.1206896551724138, 0.1206896551724138, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.1206896551724138, 0.1206896551724138, 0.1206896551724138, 0.12931034482758622, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.1810344827586207, 0.1810344827586207, 0.29310344827586204], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WBS_methylT.gap.json b/pfam_gap_rates/WBS_methylT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74222037bd42a13b96086ac25a4d4fa0e7630f8f
--- /dev/null
+++ b/pfam_gap_rates/WBS_methylT.gap.json
@@ -0,0 +1 @@
+{"family": "WBS_methylT", "n_seqs": 316, "length": 99, "gap_rates": [0.5348101265822784, 0.5063291139240507, 0.4810126582278481, 0.4272151898734177, 0.9240506329113924, 0.8291139240506329, 0.7341772151898734, 0.6772151898734177, 0.4177215189873418, 0.39556962025316456, 0.3860759493670886, 0.37341772151898733, 0.3639240506329114, 0.3512658227848101, 0.3259493670886076, 0.31645569620253167, 0.3037974683544304, 0.2879746835443038, 0.28164556962025317, 0.27531645569620256, 0.27848101265822783, 0.38924050632911394, 0.43354430379746833, 0.4936708860759494, 0.5443037974683544, 0.5506329113924051, 0.8639240506329114, 0.8829113924050633, 0.8955696202531646, 0.9493670886075949, 0.9145569620253164, 0.8892405063291139, 0.870253164556962, 0.8417721518987342, 0.49050632911392406, 0.2879746835443038, 0.14556962025316456, 0.12974683544303797, 0.0981012658227848, 0.08860759493670886, 0.08544303797468354, 0.07911392405063292, 0.06329113924050633, 0.05063291139240506, 0.04430379746835443, 0.03164556962025317, 0.0189873417721519, 0.0189873417721519, 0.012658227848101266, 0.056962025316455694, 0.07278481012658228, 0.9177215189873418, 0.810126582278481, 0.028481012658227847, 0.03164556962025317, 0.0379746835443038, 0.03481012658227848, 0.04113924050632911, 0.29430379746835444, 0.2689873417721519, 0.08227848101265822, 0.006329113924050633, 0.9177215189873418, 0.9493670886075949, 0.9430379746835443, 0.8639240506329114, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0031645569620253164, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.012658227848101266, 0.0189873417721519, 0.0189873417721519, 0.8512658227848101, 0.028481012658227847, 0.0379746835443038, 0.04430379746835443, 0.04430379746835443, 0.04746835443037975, 0.05063291139240506, 0.05379746835443038, 0.060126582278481014, 0.060126582278481014, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06645569620253164, 0.08860759493670886, 0.8481012658227848], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WIYLD.gap.json b/pfam_gap_rates/WIYLD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72c401efd20df5788bc2903e45d3fc77b1ee76b2
--- /dev/null
+++ b/pfam_gap_rates/WIYLD.gap.json
@@ -0,0 +1 @@
+{"family": "WIYLD", "n_seqs": 102, "length": 63, "gap_rates": [0.9215686274509803, 0.7450980392156863, 0.6470588235294118, 0.5, 0.4411764705882353, 0.3431372549019608, 0.13725490196078433, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.0196078431372549, 0.00980392156862745, 0.029411764705882353, 0.029411764705882353, 0.06862745098039216, 0.029411764705882353, 0.8235294117647058, 0.6764705882352942, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.058823529411764705, 0.0784313725490196, 0.11764705882352941, 0.696078431372549], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Wax2_C.gap.json b/pfam_gap_rates/Wax2_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6dbd015a4499fe8f0c5ee2b61a87818b5c75a63
--- /dev/null
+++ b/pfam_gap_rates/Wax2_C.gap.json
@@ -0,0 +1 @@
+{"family": "Wax2_C", "n_seqs": 190, "length": 173, "gap_rates": [0.10526315789473684, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.06842105263157895, 0.06842105263157895, 0.06842105263157895, 0.06315789473684211, 0.06315789473684211, 0.06315789473684211, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.04736842105263158, 0.05263157894736842, 0.6473684210526316, 0.6473684210526316, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.04736842105263158, 0.05263157894736842, 0.05263157894736842, 0.04736842105263158, 0.04736842105263158, 0.05789473684210526, 0.06315789473684211, 0.05789473684210526, 0.04736842105263158, 0.11052631578947368, 0.07368421052631578, 0.06842105263157895, 0.06842105263157895, 0.06842105263157895, 0.06315789473684211, 0.06315789473684211, 0.06315789473684211, 0.06842105263157895, 0.06842105263157895, 0.06842105263157895, 0.06842105263157895, 0.07368421052631578, 0.6368421052631579, 0.6578947368421053, 0.6473684210526316, 0.6368421052631579, 0.07894736842105263, 0.9368421052631579, 0.07368421052631578, 0.07894736842105263, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.16842105263157894, 0.11052631578947368, 0.15789473684210525, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11578947368421053, 0.11578947368421053, 0.12631578947368421, 0.11578947368421053, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.9315789473684211, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11578947368421053, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.10526315789473684, 0.10526315789473684, 0.12105263157894737, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.1368421052631579, 0.1368421052631579, 0.13157894736842105, 0.13157894736842105, 0.6631578947368421, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.1368421052631579, 0.1368421052631579, 0.1368421052631579, 0.1368421052631579, 0.1368421052631579, 0.1368421052631579, 0.14210526315789473, 0.14210526315789473, 0.14210526315789473, 0.14210526315789473, 0.14736842105263157, 0.1631578947368421, 0.21052631578947367], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Wzt_C.gap.json b/pfam_gap_rates/Wzt_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7eeebc1b92b2549f953326cbf414f2611495f44
--- /dev/null
+++ b/pfam_gap_rates/Wzt_C.gap.json
@@ -0,0 +1 @@
+{"family": "Wzt_C", "n_seqs": 574, "length": 153, "gap_rates": [0.7839721254355401, 0.5452961672473867, 0.4076655052264808, 0.34146341463414637, 0.30139372822299654, 0.25261324041811845, 0.21428571428571427, 0.16898954703832753, 0.12717770034843207, 0.11149825783972125, 0.09233449477351917, 0.08536585365853659, 0.07665505226480836, 0.06445993031358885, 0.06097560975609756, 0.05749128919860627, 0.05749128919860627, 0.156794425087108, 0.09407665505226481, 0.08013937282229965, 0.07317073170731707, 0.06445993031358885, 0.059233449477351915, 0.04355400696864112, 0.04006968641114982, 0.029616724738675958, 0.945993031358885, 0.01916376306620209, 0.010452961672473868, 0.008710801393728223, 0.006968641114982578, 0.008710801393728223, 0.006968641114982578, 0.0017421602787456446, 0.0, 0.0, 0.0, 0.0, 0.0017421602787456446, 0.0017421602787456446, 0.01916376306620209, 0.017421602787456445, 0.012195121951219513, 0.003484320557491289, 0.0017421602787456446, 0.0, 0.9355400696864111, 0.010452961672473868, 0.006968641114982578, 0.003484320557491289, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0017421602787456446, 0.0017421602787456446, 0.003484320557491289, 0.0, 0.0, 0.0017421602787456446, 0.0, 0.0017421602787456446, 0.0, 0.02613240418118467, 0.012195121951219513, 0.029616724738675958, 0.9128919860627178, 0.03484320557491289, 0.024390243902439025, 0.08362369337979095, 0.09407665505226481, 0.09407665505226481, 0.10278745644599303, 0.21254355400696864, 0.24041811846689895, 0.9285714285714286, 0.818815331010453, 0.7491289198606271, 0.07491289198606271, 0.03832752613240418, 0.07142857142857142, 0.05574912891986063, 0.9181184668989547, 0.012195121951219513, 0.010452961672473868, 0.0156794425087108, 0.008710801393728223, 0.09059233449477352, 0.04355400696864112, 0.020905923344947737, 0.013937282229965157, 0.008710801393728223, 0.003484320557491289, 0.003484320557491289, 0.006968641114982578, 0.9337979094076655, 0.5365853658536586, 0.09930313588850175, 0.12369337979094076, 0.005226480836236934, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.005226480836236934, 0.006968641114982578, 0.008710801393728223, 0.008710801393728223, 0.18989547038327526, 0.17770034843205576, 0.024390243902439025, 0.04355400696864112, 0.047038327526132406, 0.11149825783972125, 0.5679442508710801, 0.6045296167247387, 0.4878048780487805, 0.7508710801393729, 0.8937282229965157, 0.5609756097560976, 0.06620209059233449, 0.05400696864111498, 0.050522648083623695, 0.05749128919860627, 0.06097560975609756, 0.07317073170731707, 0.08536585365853659, 0.06794425087108014, 0.06620209059233449, 0.07491289198606271, 0.08188153310104529, 0.08188153310104529, 0.08536585365853659, 0.10975609756097561, 0.8937282229965157, 0.5487804878048781, 0.5644599303135889, 0.41114982578397213, 0.4181184668989547, 0.43031358885017423, 0.47909407665505227, 0.42857142857142855, 0.43205574912891986, 0.44076655052264807, 0.4738675958188153, 0.524390243902439, 0.6167247386759582, 0.7961672473867596], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YABBY.gap.json b/pfam_gap_rates/YABBY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1afc8d4865df2e5f56278401241f67b27c8e409
--- /dev/null
+++ b/pfam_gap_rates/YABBY.gap.json
@@ -0,0 +1 @@
+{"family": "YABBY", "n_seqs": 290, "length": 210, "gap_rates": [0.5137931034482759, 0.3413793103448276, 0.3310344827586207, 0.3275862068965517, 0.32413793103448274, 0.32413793103448274, 0.32413793103448274, 0.32413793103448274, 0.32413793103448274, 0.32413793103448274, 0.32413793103448274, 0.32413793103448274, 0.32068965517241377, 0.32068965517241377, 0.31724137931034485, 0.31724137931034485, 0.30689655172413793, 0.3, 0.29310344827586204, 0.29310344827586204, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.3, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27241379310344827, 0.27241379310344827, 0.27241379310344827, 0.27241379310344827, 0.27241379310344827, 0.27241379310344827, 0.27586206896551724, 0.2793103448275862, 0.2793103448275862, 0.2827586206896552, 0.43448275862068964, 0.9172413793103448, 0.7655172413793103, 0.3103448275862069, 0.3275862068965517, 0.5379310344827586, 0.3482758620689655, 0.3275862068965517, 0.4206896551724138, 0.3620689655172414, 0.38275862068965516, 0.3413793103448276, 0.3448275862068966, 0.3482758620689655, 0.5310344827586206, 0.5793103448275863, 0.5689655172413793, 0.47586206896551725, 0.8103448275862069, 0.8310344827586207, 0.8379310344827586, 0.8551724137931035, 0.8724137931034482, 0.9, 0.906896551724138, 0.9103448275862069, 0.9103448275862069, 0.9137931034482759, 0.9137931034482759, 0.9172413793103448, 0.9172413793103448, 0.9275862068965517, 0.9482758620689655, 0.9413793103448276, 0.9241379310344827, 0.9172413793103448, 0.9137931034482759, 0.9137931034482759, 0.9103448275862069, 0.9103448275862069, 0.9103448275862069, 0.903448275862069, 0.8931034482758621, 0.8620689655172413, 0.8482758620689655, 0.8310344827586207, 0.8137931034482758, 0.8, 0.4, 0.3931034482758621, 0.3620689655172414, 0.3620689655172414, 0.3586206896551724, 0.38275862068965516, 0.35517241379310344, 0.3413793103448276, 0.3482758620689655, 0.3482758620689655, 0.4379310344827586, 0.38620689655172413, 0.35517241379310344, 0.3724137931034483, 0.3448275862068966, 0.33448275862068966, 0.36551724137931035, 0.36551724137931035, 0.4103448275862069, 0.4586206896551724, 0.8655172413793103, 0.8896551724137931, 0.9344827586206896, 0.903448275862069, 0.8758620689655172, 0.8482758620689655, 0.5724137931034483, 0.9103448275862069, 0.5310344827586206, 0.4896551724137931, 0.45517241379310347, 0.3896551724137931, 0.38275862068965516, 0.3724137931034483, 0.38275862068965516, 0.3, 0.8931034482758621, 0.9137931034482759, 0.9241379310344827, 0.9344827586206896, 0.9482758620689655, 0.9310344827586207, 0.9241379310344827, 0.9, 0.8827586206896552, 0.38275862068965516, 0.33448275862068966, 0.2896551724137931, 0.28620689655172415, 0.27241379310344827, 0.3724137931034483, 0.2689655172413793, 0.9482758620689655, 0.9241379310344827, 0.18620689655172415, 0.16896551724137931, 0.16206896551724137, 0.15517241379310345, 0.15862068965517243, 0.15862068965517243, 0.14482758620689656, 0.1482758620689655, 0.13793103448275862, 0.13793103448275862, 0.1482758620689655, 0.12758620689655173, 0.12413793103448276, 0.11379310344827587, 0.10344827586206896, 0.09310344827586207, 0.09310344827586207, 0.0896551724137931, 0.0896551724137931, 0.08620689655172414, 0.07241379310344828, 0.07586206896551724, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.0896551724137931, 0.08620689655172414, 0.08620689655172414, 0.10344827586206896, 0.11379310344827587, 0.17586206896551723, 0.22413793103448276, 0.3275862068965517, 0.33448275862068966, 0.42758620689655175, 0.4379310344827586, 0.4724137931034483, 0.503448275862069, 0.5379310344827586], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YARHG.gap.json b/pfam_gap_rates/YARHG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ebc6b64a9fd088923c9d5a21123d0775b1a0b81a
--- /dev/null
+++ b/pfam_gap_rates/YARHG.gap.json
@@ -0,0 +1 @@
+{"family": "YARHG", "n_seqs": 221, "length": 90, "gap_rates": [0.6199095022624435, 0.5656108597285068, 0.5384615384615384, 0.4841628959276018, 0.4434389140271493, 0.3891402714932127, 0.334841628959276, 0.3031674208144796, 0.26244343891402716, 0.248868778280543, 0.24434389140271492, 0.22624434389140272, 0.19909502262443438, 0.17647058823529413, 0.1583710407239819, 0.14027149321266968, 0.1085972850678733, 0.09502262443438914, 0.08144796380090498, 0.06787330316742081, 0.05429864253393665, 0.027149321266968326, 0.02262443438914027, 0.02262443438914027, 0.01809954751131222, 0.013574660633484163, 0.013574660633484163, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9230769230769231, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.8959276018099548, 0.004524886877828055, 0.004524886877828055, 0.00904977375565611, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.01809954751131222, 0.02262443438914027, 0.35294117647058826, 0.42081447963800905, 0.8280542986425339, 0.9321266968325792, 0.9004524886877828, 0.5067873303167421, 0.21266968325791855, 0.19457013574660634, 0.14479638009049775, 0.10407239819004525, 0.09502262443438914, 0.08597285067873303, 0.04524886877828054, 0.04524886877828054, 0.04524886877828054, 0.04524886877828054, 0.049773755656108594, 0.05429864253393665, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06334841628959276, 0.06787330316742081, 0.07692307692307693, 0.09049773755656108, 0.11764705882352941, 0.19004524886877827, 0.2895927601809955, 0.7963800904977375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YXWGXW.gap.json b/pfam_gap_rates/YXWGXW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bea4f671db48d4f9e7a126c7c5de628c567b92b
--- /dev/null
+++ b/pfam_gap_rates/YXWGXW.gap.json
@@ -0,0 +1 @@
+{"family": "YXWGXW", "n_seqs": 260, "length": 28, "gap_rates": [0.5923076923076923, 0.47307692307692306, 0.39615384615384613, 0.3192307692307692, 0.15, 0.023076923076923078, 0.023076923076923078, 0.019230769230769232, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.06923076923076923, 0.06923076923076923, 0.08076923076923077, 0.9230769230769231, 0.8923076923076924, 0.03461538461538462, 0.038461538461538464, 0.038461538461538464, 0.04230769230769231, 0.046153846153846156, 0.05, 0.06923076923076923, 0.06153846153846154, 0.08076923076923077, 0.11538461538461539, 0.48846153846153845], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YaeQ.gap.json b/pfam_gap_rates/YaeQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07528228dbb6682a5ea319dccd20b010df486cc9
--- /dev/null
+++ b/pfam_gap_rates/YaeQ.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YafQ_toxin.gap.json b/pfam_gap_rates/YafQ_toxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9a3c41c4263cac624c7975612433a4d70328e18
--- /dev/null
+++ b/pfam_gap_rates/YafQ_toxin.gap.json
@@ -0,0 +1 @@
+{"family": "YafQ_toxin", "n_seqs": 517, "length": 109, "gap_rates": [0.7021276595744681, 0.30947775628626695, 0.20502901353965183, 0.16054158607350097, 0.12959381044487428, 0.11411992263056092, 0.10444874274661509, 0.09864603481624758, 0.09864603481624758, 0.09864603481624758, 0.09477756286266925, 0.09477756286266925, 0.09477756286266925, 0.0851063829787234, 0.08317214700193423, 0.08317214700193423, 0.07930367504835589, 0.8549323017408124, 0.10638297872340426, 0.1450676982591876, 0.1528046421663443, 0.11992263056092843, 0.10638297872340426, 0.09477756286266925, 0.06769825918762089, 0.9477756286266924, 0.9477756286266924, 0.8820116054158608, 0.05415860735009671, 0.05222437137330754, 0.0425531914893617, 0.0425531914893617, 0.04448742746615087, 0.03868471953578337, 0.04061895551257253, 0.04061895551257253, 0.03868471953578337, 0.048355899419729204, 0.04642166344294004, 0.07930367504835589, 0.06382978723404255, 0.9323017408123792, 0.0367504835589942, 0.04642166344294004, 0.029013539651837523, 0.013539651837524178, 0.007736943907156673, 0.007736943907156673, 0.007736943907156673, 0.007736943907156673, 0.007736943907156673, 0.007736943907156673, 0.007736943907156673, 0.005802707930367505, 0.013539651837524178, 0.007736943907156673, 0.009671179883945842, 0.005802707930367505, 0.009671179883945842, 0.009671179883945842, 0.013539651837524178, 0.013539651837524178, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.019342359767891684, 0.02127659574468085, 0.90715667311412, 0.9400386847195358, 0.9439071566731141, 0.9477756286266924, 0.9477756286266924, 0.9439071566731141, 0.9439071566731141, 0.9245647969052224, 0.9032882011605415, 0.025145067698259187, 0.025145067698259187, 0.027079303675048357, 0.029013539651837523, 0.030947775628626693, 0.03288201160541586, 0.03288201160541586, 0.03288201160541586, 0.03481624758220503, 0.0367504835589942, 0.0367504835589942, 0.7852998065764023, 0.9052224371373307, 0.9458413926499033, 0.8994197292069632, 0.6711798839458414, 0.03868471953578337, 0.03868471953578337, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.723404255319149, 0.7156673114119922, 0.04642166344294004, 0.04642166344294004, 0.048355899419729204, 0.048355899419729204, 0.048355899419729204, 0.05222437137330754, 0.07543520309477757, 0.08123791102514506, 0.2727272727272727, 0.6402321083172147], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YbjN.gap.json b/pfam_gap_rates/YbjN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..838e17787573cdf29c02d693a8fdbc576737c4bd
--- /dev/null
+++ b/pfam_gap_rates/YbjN.gap.json
@@ -0,0 +1 @@
+{"family": "YbjN", "n_seqs": 783, "length": 142, "gap_rates": [0.7241379310344828, 0.454661558109834, 0.29246487867177523, 0.1979565772669221, 0.16091954022988506, 0.14431673052362706, 0.13154533844189017, 0.12260536398467432, 0.12260536398467432, 0.11877394636015326, 0.11877394636015326, 0.1136653895274585, 0.1111111111111111, 0.1123882503192848, 0.10855683269476372, 0.9438058748403576, 0.9323116219667944, 0.2848020434227331, 0.24904214559386972, 0.09961685823754789, 0.09578544061302682, 0.09067688378033206, 0.08812260536398467, 0.10472541507024266, 0.09067688378033206, 0.08812260536398467, 0.08812260536398467, 0.9169859514687101, 0.9284802043422733, 0.8620689655172413, 0.5095785440613027, 0.4099616858237548, 0.10089399744572158, 0.07790549169859515, 0.07279693486590039, 0.06641123882503193, 0.06768837803320563, 0.06641123882503193, 0.06257982120051085, 0.06385696040868455, 0.06513409961685823, 0.05874840357598978, 0.05491698595146871, 0.05363984674329502, 0.05363984674329502, 0.05363984674329502, 0.0561941251596424, 0.05491698595146871, 0.05363984674329502, 0.05363984674329502, 0.10217113665389528, 0.09450830140485313, 0.08556832694763729, 0.07407407407407407, 0.07151979565772669, 0.8212005108556832, 0.0421455938697318, 0.035759897828863345, 0.037037037037037035, 0.035759897828863345, 0.034482758620689655, 0.031928480204342274, 0.03065134099616858, 0.0280970625798212, 0.02554278416347382, 0.9016602809706258, 0.7905491698595147, 0.13154533844189017, 0.038314176245210725, 0.007662835249042145, 0.006385696040868455, 0.0038314176245210726, 0.002554278416347382, 0.002554278416347382, 0.002554278416347382, 0.002554278416347382, 0.001277139208173691, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005108556832694764, 0.0038314176245210726, 0.5951468710089399, 0.037037037037037035, 0.002554278416347382, 0.001277139208173691, 0.002554278416347382, 0.002554278416347382, 0.0038314176245210726, 0.0038314176245210726, 0.7982120051085568, 0.8876117496807152, 0.8390804597701149, 0.7598978288633461, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.005108556832694764, 0.007662835249042145, 0.011494252873563218, 0.01277139208173691, 0.7522349936143039, 0.6296296296296297, 0.3218390804597701, 0.02554278416347382, 0.017879948914431672, 0.020434227330779056, 0.020434227330779056, 0.021711366538952746, 0.021711366538952746, 0.021711366538952746, 0.022988505747126436, 0.02681992337164751, 0.0280970625798212, 0.02937420178799489, 0.031928480204342274, 0.033205619412515965, 0.0421455938697318, 0.04725415070242656, 0.05236270753512133, 0.0561941251596424, 0.06257982120051085, 0.07151979565772669, 0.0842911877394636, 0.09067688378033206, 0.09961685823754789, 0.13154533844189017, 0.15708812260536398, 0.19540229885057472, 0.23627075351213284, 0.4482758620689655, 0.7841634738186463], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YceG_bac.gap.json b/pfam_gap_rates/YceG_bac.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c8eaeccad9e236ff537ce6ebee2963ca5b885f8
--- /dev/null
+++ b/pfam_gap_rates/YceG_bac.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YceI.gap.json b/pfam_gap_rates/YceI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..622b5a5284fd291a81cbf16e0572a8ed338c5204
--- /dev/null
+++ b/pfam_gap_rates/YceI.gap.json
@@ -0,0 +1 @@
+{"family": "YceI", "n_seqs": 1837, "length": 200, "gap_rates": [0.3772455089820359, 0.326619488296135, 0.2580293957539467, 0.23788786064235165, 0.2231899836690256, 0.20740337506804574, 0.19052803483941208, 0.17746325530756668, 0.16820903647250954, 0.1638541099618944, 0.16004354926510614, 0.15895481763745237, 0.16603157321720197, 0.16058791507893305, 0.15296679368535657, 0.15568862275449102, 0.27925966249319545, 0.9314099074578116, 0.21339139902014154, 0.1448013064779532, 0.9488296135002722, 0.12084921066956995, 0.8666303756124115, 0.07566684812193794, 0.0724006532389766, 0.06804572672836146, 0.07294501905280348, 0.08274360370168754, 0.06369080021774633, 0.061513336962438755, 0.059880239520958084, 0.07022318998366903, 0.0587915078933043, 0.05770277626565052, 0.05552531301034295, 0.06096897114861187, 0.05770277626565052, 0.06913445835601524, 0.9488296135002722, 0.15351115949918345, 0.20195971692977682, 0.15732172019597168, 0.12248230811105063, 0.11377245508982035, 0.2994011976047904, 0.12302667392487751, 0.9357648339684268, 0.08165487207403375, 0.05770277626565052, 0.018508437670114317, 0.017419706042460535, 0.017419706042460535, 0.017419706042460535, 0.017964071856287425, 0.017419706042460535, 0.015786608600979857, 0.015242242787152967, 0.015786608600979857, 0.015786608600979857, 0.015242242787152967, 0.015786608600979857, 0.894393032117583, 0.9014697876973327, 0.9085465432770822, 0.9373979314099075, 0.9052803483941209, 0.8982035928143712, 0.8922155688622755, 0.027762656505171474, 0.037016875340228635, 0.029940119760479042, 0.027762656505171474, 0.0130647795318454, 0.010887316276537834, 0.009254218835057159, 0.009254218835057159, 0.009254218835057159, 0.00979858464888405, 0.016875340228633642, 0.22046815459989114, 0.06205770277626565, 0.014697876973326075, 0.008709853021230268, 0.010342950462710943, 0.00979858464888405, 0.010342950462710943, 0.00979858464888405, 0.015786608600979857, 0.014697876973326075, 0.015786608600979857, 0.00979858464888405, 0.010342950462710943, 0.00979858464888405, 0.9433859553620033, 0.015242242787152967, 0.016875340228633642, 0.0195971692977681, 0.025040827436037017, 0.9063690800217746, 0.027218290691344585, 0.008709853021230268, 0.054980947196516056, 0.06967882416984214, 0.27653783342406096, 0.7817093086554164, 0.8230811105062602, 0.8884050081654872, 0.934676102340773, 0.854109961894393, 0.8034839412084921, 0.7278170930865542, 0.10342950462710941, 0.05933587370713119, 0.015242242787152967, 0.00979858464888405, 0.04790419161676647, 0.010342950462710943, 0.009254218835057159, 0.00979858464888405, 0.008709853021230268, 0.008709853021230268, 0.008709853021230268, 0.008165487207403375, 0.008165487207403375, 0.008165487207403375, 0.008709853021230268, 0.008165487207403375, 0.008165487207403375, 0.008165487207403375, 0.008165487207403375, 0.008165487207403375, 0.008709853021230268, 0.009254218835057159, 0.009254218835057159, 0.010342950462710943, 0.010342950462710943, 0.010887316276537834, 0.8323353293413174, 0.015242242787152967, 0.8807838867719108, 0.7082199237887861, 0.06695699510070767, 0.08165487207403375, 0.3941208492106696, 0.44746869896570496, 0.4752313554708764, 0.5470876428960262, 0.9493739793140991, 0.7876973326075123, 0.49156232988568316, 0.4648884050081655, 0.4316820903647251, 0.36145890038105605, 0.03483941208492107, 0.0391943385955362, 0.9401197604790419, 0.889493739793141, 0.037016875340228635, 0.015786608600979857, 0.9488296135002722, 0.014697876973326075, 0.014697876973326075, 0.014697876973326075, 0.015242242787152967, 0.014697876973326075, 0.015242242787152967, 0.015242242787152967, 0.015242242787152967, 0.015242242787152967, 0.015242242787152967, 0.015786608600979857, 0.016875340228633642, 0.029940119760479042, 0.0261295590636908, 0.24986390854654328, 0.35002721829069133, 0.5715841045182363, 0.8796951551442569, 0.8900381056069678, 0.8840500816548721, 0.6336418072945019, 0.47359825802939576, 0.29123571039738705, 0.0457267283614589, 0.03483941208492107, 0.0522591181273816, 0.05117038649972782, 0.04409363091997823, 0.04463799673380512, 0.04463799673380512, 0.045182362547632006, 0.04790419161676647, 0.05117038649972782, 0.0522591181273816, 0.06314643440391943, 0.0718562874251497, 0.10016330974414807, 0.14589003810560697, 0.321720195971693, 0.6396298312465977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Yip1.gap.json b/pfam_gap_rates/Yip1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58362ea5d6fbdabbe1c5cde1f4c39b4fb0b0afec
--- /dev/null
+++ b/pfam_gap_rates/Yip1.gap.json
@@ -0,0 +1 @@
+{"family": "Yip1", "n_seqs": 1427, "length": 237, "gap_rates": [0.6685353889278206, 0.4758234057463209, 0.38682550805886473, 0.3629992992291521, 0.34688156972669937, 0.3342676944639103, 0.3237561317449194, 0.3076384022424667, 0.29432375613174494, 0.28381219341275404, 0.27680448493342674, 0.2697967764540995, 0.26769446391030133, 0.2578836720392432, 0.2515767344078486, 0.24667133847231956, 0.13805185704274703, 0.4989488437281009, 0.5297827610371408, 0.555010511562719, 0.6405045550105115, 0.8388227049754731, 0.8675543097407148, 0.7638402242466713, 0.606166783461808, 0.5459004905395936, 0.5171688857743518, 0.4576033637000701, 0.358093903293623, 0.32445690259285215, 0.2817098808689559, 0.22775052557813594, 0.11492641906096707, 0.0700770847932726, 0.05816398037841626, 0.05185704274702172, 0.042747021723896286, 0.032936229852838124, 0.0322354590049054, 0.026629292221443588, 0.02452697967764541, 0.02452697967764541, 0.02242466713384723, 0.02102312543798178, 0.02102312543798178, 0.020322354590049056, 0.019621583742116328, 0.0189208128941836, 0.019621583742116328, 0.019621583742116328, 0.019621583742116328, 0.018220042046250877, 0.8500350385423966, 0.8857743517869656, 0.913104414856342, 0.933426769446391, 0.9236159775753329, 0.9074982480728802, 0.8710581639803784, 0.8374211632796076, 0.4260686755430974, 0.48283111422564823, 0.4835318850735809, 0.49754730203223546, 0.50385423966363, 0.4982480728801682, 0.4954449894884373, 0.4968465311843027, 0.50385423966363, 0.4611072179397337, 0.7070777855641205, 0.7743517869656622, 0.8675543097407148, 0.9074982480728802, 0.9306236860546602, 0.9481429572529783, 0.9390329362298528, 0.9194113524877365, 0.8948843728100911, 0.8206026629292221, 0.7224947442186405, 0.6951646811492642, 0.6089698668535389, 0.5585143658023827, 0.41345480028030834, 0.36229852838121934, 0.3104414856341976, 0.29152067274001403, 0.26278906797477225, 0.1156271899088998, 0.08339173090399439, 0.0700770847932726, 0.06236860546601261, 0.05886475122634898, 0.056762438682550806, 0.050455501051156273, 0.021723896285914507, 0.015416958654519973, 0.01401541695865452, 0.01051156271899089, 0.01051156271899089, 0.014716187806587245, 0.3644008409250175, 0.5585143658023827, 0.3286615276804485, 0.02102312543798178, 0.011913104414856343, 0.011212333566923615, 0.004204625087596356, 0.002102312543798178, 0.002803083391730904, 0.002803083391730904, 0.00350385423966363, 0.002803083391730904, 0.002803083391730904, 0.009810791871058164, 0.01401541695865452, 0.37561317449194115, 0.37421163279607567, 0.35949544498948843, 0.4351786965662228, 0.23335669236159776, 0.05466012613875263, 0.9404344779257183, 0.8220042046250876, 0.002803083391730904, 0.00350385423966363, 0.004905395935529082, 0.002102312543798178, 0.023125437981779958, 0.0189208128941836, 0.0161177295024527, 0.000700770847932726, 0.000700770847932726, 0.000700770847932726, 0.000700770847932726, 0.000700770847932726, 0.000700770847932726, 0.002102312543798178, 0.002102312543798178, 0.9011913104414856, 0.9011913104414856, 0.8920812894183602, 0.002803083391730904, 0.002102312543798178, 0.002803083391730904, 0.002102312543798178, 0.002102312543798178, 0.00350385423966363, 0.004204625087596356, 0.004905395935529082, 0.004905395935529082, 0.006306937631394534, 0.04204625087596356, 0.039943938332165384, 0.06867554309740714, 0.12754029432375613, 0.16608269096005607, 0.17869656622284513, 0.20882971268395234, 0.22214435879467415, 0.2424667133847232, 0.3293622985283812, 0.6699369306236861, 0.7252978276103714, 0.8248072880168185, 0.8451296426068675, 0.854239663629993, 0.8563419761737912, 0.8640504555010512, 0.869656622284513, 0.8759635599159075, 0.8906797477224947, 0.920812894183602, 0.9411352487736511, 0.9467414155571128, 0.9306236860546602, 0.9046951646811493, 0.8808689558514365, 0.8703573931324456, 0.8682550805886475, 0.8591450595655221, 0.8549404344779257, 0.8479327259985985, 0.8409250175192712, 0.7876664330763841, 0.693062368605466, 0.6398037841625789, 0.5143658023826209, 0.3538892782060266, 0.28521373510861947, 0.2396636299929923, 0.2207428170988087, 0.06517168885774352, 0.05536089698668535, 0.042747021723896286, 0.039243167484232656, 0.036440084092501754, 0.03714085494043448, 0.035739313244569026, 0.04134548002803083, 0.04414856341976174, 0.04905395935529082, 0.049754730203223546, 0.05536089698668535, 0.05956552207428171, 0.07217939733707078, 0.08128941836019622, 0.08759635599159075, 0.13805185704274703, 0.15557112824106517, 0.19341275402943237, 0.21373510861948142, 0.2263489838822705, 0.2859145059565522, 0.271198318149965, 0.2697967764540995, 0.27049754730203224, 0.2775052557813595, 0.28100911002102313, 0.2922214435879467, 0.3041345480028031, 0.34688156972669937, 0.4036440084092502, 0.4533987386124737, 0.4849334267694464, 0.8948843728100911, 0.9467414155571128, 0.9264190609670637, 0.8633496846531185, 0.5290819901892081, 0.6075683251576735, 0.6187806587245971, 0.6468114926419061, 0.7119831814996496, 0.7974772249474422, 0.9418360196215837], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YitT_membrane.gap.json b/pfam_gap_rates/YitT_membrane.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11ecc0484040e7cc25de546cff7c0cbb6bb2cd16
--- /dev/null
+++ b/pfam_gap_rates/YitT_membrane.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YjbH.gap.json b/pfam_gap_rates/YjbH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2192b4be97d6b960fa75f3a840c4fc3e9e840de7
--- /dev/null
+++ b/pfam_gap_rates/YjbH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YjgF_endoribonc.gap.json b/pfam_gap_rates/YjgF_endoribonc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b69c4d7904147d9e04ace081f50d8819f383a899
--- /dev/null
+++ b/pfam_gap_rates/YjgF_endoribonc.gap.json
@@ -0,0 +1 @@
+{"family": "YjgF_endoribonc", "n_seqs": 836, "length": 151, "gap_rates": [0.5849282296650717, 0.3815789473684211, 0.1854066985645933, 0.12799043062200957, 0.11483253588516747, 0.09330143540669857, 0.07535885167464115, 0.06937799043062201, 0.0645933014354067, 0.05502392344497608, 0.05263157894736842, 0.05263157894736842, 0.05143540669856459, 0.05143540669856459, 0.04665071770334928, 0.041866028708133975, 0.03827751196172249, 0.04066985645933014, 0.028708133971291867, 0.02631578947368421, 0.025119617224880382, 0.025119617224880382, 0.025119617224880382, 0.023923444976076555, 0.022727272727272728, 0.0215311004784689, 0.0215311004784689, 0.019138755980861243, 0.019138755980861243, 0.02033492822966507, 0.02033492822966507, 0.02033492822966507, 0.02033492822966507, 0.02631578947368421, 0.02033492822966507, 0.019138755980861243, 0.028708133971291867, 0.02751196172248804, 0.028708133971291867, 0.03708133971291866, 0.03708133971291866, 0.029904306220095694, 0.04066985645933014, 0.08014354066985646, 0.08373205741626795, 0.07655502392344497, 0.01076555023923445, 0.009569377990430622, 0.008373205741626795, 0.007177033492822967, 0.008373205741626795, 0.007177033492822967, 0.009569377990430622, 0.008373205741626795, 0.005980861244019139, 0.005980861244019139, 0.005980861244019139, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.0035885167464114833, 0.0035885167464114833, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.008373205741626795, 0.007177033492822967, 0.888755980861244, 0.008373205741626795, 0.9294258373205742, 0.05861244019138756, 0.009569377990430622, 0.004784688995215311, 0.005980861244019139, 0.0011961722488038277, 0.04665071770334928, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0011961722488038277, 0.0035885167464114833, 0.0035885167464114833, 0.0035885167464114833, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.005980861244019139, 0.005980861244019139, 0.005980861244019139, 0.9270334928229665, 0.007177033492822967, 0.014354066985645933, 0.01555023923444976, 0.009569377990430622, 0.007177033492822967, 0.005980861244019139, 0.005980861244019139, 0.005980861244019139, 0.005980861244019139, 0.005980861244019139, 0.007177033492822967, 0.01076555023923445, 0.011961722488038277, 0.011961722488038277, 0.011961722488038277, 0.014354066985645933, 0.022727272727272728, 0.025119617224880382, 0.03229665071770335, 0.039473684210526314, 0.04784688995215311, 0.12679425837320574, 0.16626794258373206, 0.29784688995215314, 0.423444976076555, 0.4988038277511962, 0.5705741626794258, 0.6064593301435407, 0.7739234449760766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YjgP_YjgQ.gap.json b/pfam_gap_rates/YjgP_YjgQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f92abe432dd2d8dd10b7183a37f0024537276499
--- /dev/null
+++ b/pfam_gap_rates/YjgP_YjgQ.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ykof.gap.json b/pfam_gap_rates/Ykof.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b17a82a1969b32cf4a3d48e20a97c0a55aba181a
--- /dev/null
+++ b/pfam_gap_rates/Ykof.gap.json
@@ -0,0 +1 @@
+{"family": "Ykof", "n_seqs": 155, "length": 83, "gap_rates": [0.9354838709677419, 0.4967741935483871, 0.25161290322580643, 0.05806451612903226, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.5225806451612903, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.0064516129032258064, 0.012903225806451613, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9290322580645162, 0.7290322580645161, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0064516129032258064, 0.025806451612903226, 0.03870967741935484, 0.05161290322580645, 0.07096774193548387, 0.08387096774193549, 0.08387096774193549, 0.09032258064516129, 0.11612903225806452, 0.14193548387096774, 0.15483870967741936, 0.24516129032258063, 0.14838709677419354, 0.14838709677419354, 0.16129032258064516, 0.16774193548387098, 0.17419354838709677, 0.1935483870967742, 0.1935483870967742, 0.2129032258064516, 0.23225806451612904, 0.2709677419354839, 0.2903225806451613, 0.3225806451612903, 0.38064516129032255, 0.5870967741935483], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Yos1.gap.json b/pfam_gap_rates/Yos1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9488b356296f82dd84c3bfb918077143c39cc63b
--- /dev/null
+++ b/pfam_gap_rates/Yos1.gap.json
@@ -0,0 +1 @@
+{"family": "Yos1", "n_seqs": 263, "length": 99, "gap_rates": [0.1596958174904943, 0.09885931558935361, 0.07604562737642585, 0.07224334600760456, 0.06844106463878327, 0.060836501901140684, 0.053231939163498096, 0.04182509505703422, 0.04182509505703422, 0.04182509505703422, 0.04182509505703422, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.03802281368821293, 0.03802281368821293, 0.03802281368821293, 0.03802281368821293, 0.03802281368821293, 0.03802281368821293, 0.04182509505703422, 0.03802281368821293, 0.03802281368821293, 0.034220532319391636, 0.030418250950570342, 0.026615969581749048, 0.019011406844106463, 0.019011406844106463, 0.026615969581749048, 0.053231939163498096, 0.06463878326996197, 0.2889733840304182, 0.3650190114068441, 0.8326996197718631, 0.8631178707224335, 0.8859315589353612, 0.8973384030418251, 0.9201520912547528, 0.9429657794676806, 0.9277566539923955, 0.9049429657794676, 0.8897338403041825, 0.870722433460076, 0.8517110266159695, 0.7984790874524715, 0.38022813688212925, 0.311787072243346, 0.19391634980988592, 0.14068441064638784, 0.11787072243346007, 0.11026615969581749, 0.3193916349809886, 0.2965779467680608, 0.8288973384030418, 0.8821292775665399, 0.9163498098859315, 0.9467680608365019, 0.8897338403041825, 0.870722433460076, 0.7262357414448669, 0.045627376425855515, 0.03802281368821293, 0.026615969581749048, 0.022813688212927757, 0.019011406844106463, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.034220532319391636, 0.034220532319391636, 0.03802281368821293, 0.28517110266159695, 0.04182509505703422, 0.03802281368821293, 0.04182509505703422, 0.08745247148288973, 0.13688212927756654, 0.1596958174904943, 0.1634980988593156, 0.16730038022813687, 0.17490494296577946, 0.17490494296577946, 0.18250950570342206, 0.18631178707224336, 0.19011406844106463, 0.18631178707224336, 0.19011406844106463, 0.19391634980988592, 0.19391634980988592, 0.20152091254752852, 0.21292775665399238, 0.23574144486692014, 0.23954372623574144], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YrhK.gap.json b/pfam_gap_rates/YrhK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5748a61ce4008430b48b9f77c003ece98e795ec
--- /dev/null
+++ b/pfam_gap_rates/YrhK.gap.json
@@ -0,0 +1 @@
+{"family": "YrhK", "n_seqs": 134, "length": 67, "gap_rates": [0.6194029850746269, 0.3656716417910448, 0.23134328358208955, 0.16417910447761194, 0.14925373134328357, 0.11940298507462686, 0.1044776119402985, 0.09701492537313433, 0.029850746268656716, 0.014925373134328358, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7014925373134329, 0.7089552238805971, 0.664179104477612, 0.6716417910447762, 0.753731343283582, 0.1791044776119403, 0.1791044776119403, 0.8731343283582089, 0.9029850746268657, 0.9402985074626866, 0.9029850746268657, 0.8507462686567164, 0.014925373134328358, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.022388059701492536, 0.022388059701492536, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.014925373134328358, 0.014925373134328358, 0.022388059701492536, 0.03731343283582089, 0.06716417910447761, 0.08208955223880597, 0.08208955223880597, 0.11940298507462686, 0.15671641791044777, 0.1791044776119403, 0.2835820895522388, 0.40298507462686567, 0.7686567164179104], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ysc84.gap.json b/pfam_gap_rates/Ysc84.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbe439e7d94436ec01e1741edba42b8dc418b5d3
--- /dev/null
+++ b/pfam_gap_rates/Ysc84.gap.json
@@ -0,0 +1 @@
+{"family": "Ysc84", "n_seqs": 898, "length": 145, "gap_rates": [0.8975501113585747, 0.10244988864142539, 0.04120267260579064, 0.0378619153674833, 0.034521158129175944, 0.031180400890868598, 0.026726057906458798, 0.026726057906458798, 0.024498886414253896, 0.024498886414253896, 0.024498886414253896, 0.02338530066815145, 0.021158129175946547, 0.0200445434298441, 0.017817371937639197, 0.017817371937639197, 0.017817371937639197, 0.017817371937639197, 0.017817371937639197, 0.017817371937639197, 0.017817371937639197, 0.017817371937639197, 0.01893095768374165, 0.0200445434298441, 0.022271714922048998, 0.021158129175946547, 0.01893095768374165, 0.017817371937639197, 0.017817371937639197, 0.017817371937639197, 0.3574610244988864, 0.0467706013363029, 0.07126948775055679, 0.013363028953229399, 0.012249443207126948, 0.012249443207126948, 0.012249443207126948, 0.011135857461024499, 0.01002227171492205, 0.0077951002227171495, 0.0077951002227171495, 0.01002227171492205, 0.012249443207126948, 0.015590200445434299, 0.011135857461024499, 0.008908685968819599, 0.012249443207126948, 0.022271714922048998, 0.0200445434298441, 0.012249443207126948, 0.013363028953229399, 0.013363028953229399, 0.015590200445434299, 0.01670378619153675, 0.01893095768374165, 0.05011135857461024, 0.10690423162583519, 0.07238307349665925, 0.17483296213808464, 0.344097995545657, 0.5167037861915368, 0.9097995545657016, 0.9242761692650334, 0.9265033407572383, 0.933184855233853, 0.9376391982182628, 0.9443207126948775, 0.9498886414253898, 0.9454342984409799, 0.9432071269487751, 0.9342984409799554, 0.9309576837416481, 0.9265033407572383, 0.920935412026726, 0.8095768374164811, 0.21603563474387527, 0.0801781737193764, 0.0467706013363029, 0.0400890868596882, 0.0378619153674833, 0.0334075723830735, 0.0334075723830735, 0.035634743875278395, 0.036748329621380846, 0.035634743875278395, 0.0467706013363029, 0.034521158129175944, 0.0334075723830735, 0.0334075723830735, 0.036748329621380846, 0.03897550111358575, 0.03897550111358575, 0.0400890868596882, 0.0400890868596882, 0.0400890868596882, 0.042316258351893093, 0.0467706013363029, 0.05456570155902005, 0.0556792873051225, 0.06904231625835189, 0.10022271714922049, 0.18151447661469933, 0.22494432071269488, 0.22717149220489977, 0.23162583518930957, 0.23385300668151449, 0.23608017817371937, 0.25501113585746105, 0.2594654788418708, 0.2661469933184855, 0.2661469933184855, 0.2661469933184855, 0.27616926503340755, 0.26837416481069043, 0.8452115812917594, 0.26948775055679286, 0.26837416481069043, 0.26948775055679286, 0.26948775055679286, 0.27060133630289535, 0.27060133630289535, 0.27060133630289535, 0.9354120267260579, 0.2717149220489978, 0.2728285077951002, 0.2728285077951002, 0.2750556792873051, 0.3051224944320713, 0.9476614699331849, 0.8841870824053452, 0.29398663697104677, 0.2828507795100223, 0.2795100222717149, 0.2806236080178174, 0.28507795100222716, 0.29287305122494434, 0.2962138084632517, 0.2962138084632517, 0.30066815144766146, 0.3040089086859688, 0.30734966592427615, 0.3129175946547884, 0.34855233853006684, 0.4688195991091314, 0.8051224944320713], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YscJ_FliF_C.gap.json b/pfam_gap_rates/YscJ_FliF_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea609ed80279ddab963c00f51031bb5e0f9a381d
--- /dev/null
+++ b/pfam_gap_rates/YscJ_FliF_C.gap.json
@@ -0,0 +1 @@
+{"family": "YscJ_FliF_C", "n_seqs": 895, "length": 217, "gap_rates": [0.20335195530726258, 0.15195530726256984, 0.1106145251396648, 0.09385474860335195, 0.08826815642458101, 0.07709497206703911, 0.07039106145251396, 0.05139664804469274, 0.048044692737430165, 0.03687150837988827, 0.0335195530726257, 0.03128491620111732, 0.027932960893854747, 0.027932960893854747, 0.026815642458100558, 0.026815642458100558, 0.026815642458100558, 0.026815642458100558, 0.026815642458100558, 0.026815642458100558, 0.026815642458100558, 0.026815642458100558, 0.026815642458100558, 0.026815642458100558, 0.027932960893854747, 0.027932960893854747, 0.026815642458100558, 0.027932960893854747, 0.027932960893854747, 0.026815642458100558, 0.9418994413407821, 0.9072625698324023, 0.0335195530726257, 0.05251396648044693, 0.7798882681564245, 0.8569832402234637, 0.8994413407821229, 0.7966480446927374, 0.7664804469273743, 0.08268156424581005, 0.2122905027932961, 0.07597765363128492, 0.03240223463687151, 0.8223463687150838, 0.8614525139664805, 0.9407821229050279, 0.8435754189944135, 0.8078212290502793, 0.030167597765363128, 0.030167597765363128, 0.027932960893854747, 0.88268156424581, 0.027932960893854747, 0.02905027932960894, 0.03240223463687151, 0.8245810055865922, 0.034636871508379886, 0.035754189944134075, 0.911731843575419, 0.7966480446927374, 0.042458100558659215, 0.0446927374301676, 0.041340782122905026, 0.04692737430167598, 0.042458100558659215, 0.829050279329609, 0.9486033519553073, 0.6223463687150838, 0.09608938547486033, 0.061452513966480445, 0.053631284916201116, 0.049162011173184354, 0.03798882681564246, 0.035754189944134075, 0.035754189944134075, 0.05921787709497207, 0.03798882681564246, 0.0446927374301676, 0.8804469273743016, 0.048044692737430165, 0.03910614525139665, 0.034636871508379886, 0.03798882681564246, 0.5631284916201117, 0.6893854748603352, 0.7229050279329609, 0.7486033519553073, 0.8033519553072626, 0.8379888268156425, 0.8759776536312849, 0.8983240223463688, 0.9150837988826815, 0.9318435754189944, 0.9418994413407821, 0.9486033519553073, 0.9385474860335196, 0.9217877094972067, 0.906145251396648, 0.888268156424581, 0.8536312849162011, 0.823463687150838, 0.7675977653631285, 0.7284916201117319, 0.7106145251396648, 0.641340782122905, 0.5106145251396648, 0.25139664804469275, 0.25027932960893856, 0.12290502793296089, 0.0893854748603352, 0.06256983240223464, 0.04692737430167598, 0.03910614525139665, 0.03798882681564246, 0.03128491620111732, 0.035754189944134075, 0.041340782122905026, 0.02569832402234637, 0.9050279329608939, 0.02011173184357542, 0.02011173184357542, 0.01899441340782123, 0.01675977653631285, 0.01564245810055866, 0.01564245810055866, 0.01564245810055866, 0.01564245810055866, 0.01564245810055866, 0.01452513966480447, 0.01452513966480447, 0.01452513966480447, 0.013407821229050279, 0.013407821229050279, 0.013407821229050279, 0.013407821229050279, 0.013407821229050279, 0.013407821229050279, 0.013407821229050279, 0.013407821229050279, 0.013407821229050279, 0.01452513966480447, 0.01564245810055866, 0.01564245810055866, 0.034636871508379886, 0.01564245810055866, 0.01564245810055866, 0.01452513966480447, 0.01564245810055866, 0.01564245810055866, 0.01564245810055866, 0.01564245810055866, 0.01564245810055866, 0.01452513966480447, 0.01564245810055866, 0.01564245810055866, 0.01452513966480447, 0.40558659217877097, 0.4335195530726257, 0.47374301675977654, 0.5944134078212291, 0.8569832402234637, 0.9206703910614525, 0.9307262569832402, 0.9385474860335196, 0.9430167597765363, 0.9351955307262569, 0.9284916201117318, 0.9050279329608939, 0.7955307262569833, 0.5229050279329609, 0.45027932960893857, 0.41564245810055866, 0.4011173184357542, 0.24022346368715083, 0.5709497206703911, 0.9351955307262569, 0.7162011173184357, 0.3039106145251397, 0.2324022346368715, 0.22793296089385476, 0.1463687150837989, 0.03240223463687151, 0.030167597765363128, 0.030167597765363128, 0.030167597765363128, 0.03240223463687151, 0.030167597765363128, 0.03240223463687151, 0.03798882681564246, 0.034636871508379886, 0.034636871508379886, 0.027932960893854747, 0.026815642458100558, 0.027932960893854747, 0.03128491620111732, 0.0335195530726257, 0.042458100558659215, 0.048044692737430165, 0.0782122905027933, 0.08268156424581005, 0.1005586592178771, 0.10391061452513967, 0.11508379888268157, 0.12067039106145251, 0.14972067039106146, 0.1776536312849162, 0.18212290502793296, 0.16983240223463686, 0.16089385474860335, 0.16312849162011173, 0.16759776536312848, 0.16759776536312848, 0.17318435754189945, 0.18100558659217877, 0.18994413407821228, 0.2, 0.2245810055865922], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YugN.gap.json b/pfam_gap_rates/YugN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67b739234b372bd8468b3c71df6c8560ad96c342
--- /dev/null
+++ b/pfam_gap_rates/YugN.gap.json
@@ -0,0 +1 @@
+{"family": "YugN", "n_seqs": 172, "length": 141, "gap_rates": [0.7790697674418605, 0.5465116279069767, 0.5, 0.20930232558139536, 0.11046511627906977, 0.05232558139534884, 0.040697674418604654, 0.011627906976744186, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.005813953488372093, 0.040697674418604654, 0.011627906976744186, 0.11627906976744186, 0.040697674418604654, 0.011627906976744186, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.0, 0.0, 0.7674418604651163, 0.6511627906976745, 0.08139534883720931, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.9186046511627907, 0.9302325581395349, 0.9302325581395349, 0.9127906976744186, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.01744186046511628, 0.046511627906976744, 0.11046511627906977, 0.20348837209302326, 0.25, 0.32558139534883723, 0.37209302325581395, 0.9302325581395349, 0.9476744186046512, 0.8953488372093024, 0.4011627906976744, 0.38953488372093026, 0.38953488372093026, 0.38953488372093026, 0.3953488372093023, 0.4011627906976744, 0.43023255813953487, 0.48255813953488375, 0.5058139534883721, 0.5232558139534884, 0.5523255813953488, 0.5581395348837209, 0.5581395348837209, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.9244186046511628, 0.9244186046511628, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.563953488372093, 0.5697674418604651, 0.5697674418604651, 0.5697674418604651, 0.5697674418604651, 0.5697674418604651, 0.5755813953488372, 0.5813953488372093, 0.6162790697674418, 0.7325581395348837, 0.8430232558139535], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/bPH_3.gap.json b/pfam_gap_rates/bPH_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d6e305f5d81fddfc8cb60899069eac9fa810add
--- /dev/null
+++ b/pfam_gap_rates/bPH_3.gap.json
@@ -0,0 +1 @@
+{"family": "bPH_3", "n_seqs": 132, "length": 114, "gap_rates": [0.3484848484848485, 0.25757575757575757, 0.18181818181818182, 0.1590909090909091, 0.1590909090909091, 0.15151515151515152, 0.14393939393939395, 0.14393939393939395, 0.14393939393939395, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.14393939393939395, 0.15151515151515152, 0.15151515151515152, 0.5606060606060606, 0.42424242424242425, 0.6060606060606061, 0.8712121212121212, 0.9393939393939394, 0.946969696969697, 0.9318181818181818, 0.7954545454545454, 0.5757575757575758, 0.3712121212121212, 0.3181818181818182, 0.09090909090909091, 0.06060606060606061, 0.05303030303030303, 0.030303030303030304, 0.030303030303030304, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.03787878787878788, 0.015151515151515152, 0.007575757575757576, 0.19696969696969696, 0.07575757575757576, 0.06060606060606061, 0.030303030303030304, 0.7575757575757576, 0.007575757575757576, 0.0, 0.007575757575757576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007575757575757576, 0.007575757575757576, 0.015151515151515152, 0.03787878787878788, 0.03787878787878788, 0.03787878787878788, 0.8712121212121212, 0.9090909090909091, 0.9166666666666666, 0.946969696969697, 0.9166666666666666, 0.9090909090909091, 0.9015151515151515, 0.8484848484848485, 0.03787878787878788, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.6893939393939394, 0.05303030303030303, 0.06060606060606061, 0.06818181818181818, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.09090909090909091, 0.09848484848484848, 0.14393939393939395, 0.09848484848484848, 0.9393939393939394, 0.11363636363636363, 0.11363636363636363, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.13636363636363635, 0.15151515151515152, 0.1590909090909091, 0.2803030303030303, 0.3333333333333333, 0.36363636363636365, 0.38636363636363635, 0.45454545454545453, 0.8636363636363636], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/bPH_6.gap.json b/pfam_gap_rates/bPH_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75ce4168d9d4a1c143684bd7ed791ab110871950
--- /dev/null
+++ b/pfam_gap_rates/bPH_6.gap.json
@@ -0,0 +1 @@
+{"family": "bPH_6", "n_seqs": 366, "length": 89, "gap_rates": [0.2786885245901639, 0.17759562841530055, 0.1284153005464481, 0.09562841530054644, 0.07923497267759563, 0.07377049180327869, 0.030054644808743168, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00273224043715847, 0.0, 0.0, 0.0, 0.00273224043715847, 0.9180327868852459, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00273224043715847, 0.00273224043715847, 0.02459016393442623, 0.0, 0.0, 0.02459016393442623, 0.01912568306010929, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.06557377049180328, 0.22404371584699453, 0.6939890710382514, 0.7103825136612022, 0.7431693989071039, 0.8579234972677595, 0.8797814207650273, 0.9480874316939891, 0.8879781420765027, 0.8688524590163934, 0.855191256830601, 0.7295081967213115, 0.7049180327868853, 0.674863387978142, 0.0546448087431694, 0.06830601092896176, 0.07377049180327869, 0.09016393442622951, 0.09562841530054644, 0.09836065573770492, 0.09836065573770492, 0.8633879781420765, 0.8934426229508197, 0.8770491803278688, 0.8333333333333334, 0.1284153005464481, 0.1092896174863388, 0.11202185792349727, 0.11202185792349727, 0.11202185792349727, 0.11748633879781421, 0.12568306010928962, 0.13114754098360656, 0.1448087431693989, 0.14754098360655737, 0.1557377049180328, 0.16939890710382513, 0.17759562841530055, 0.1830601092896175, 0.5, 0.2185792349726776, 0.21311475409836064, 0.2185792349726776, 0.22131147540983606, 0.2459016393442623, 0.2568306010928962, 0.27595628415300544, 0.2978142076502732, 0.3524590163934426, 0.3797814207650273, 0.4262295081967213, 0.7540983606557377], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/cobW.gap.json b/pfam_gap_rates/cobW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00be7da10ecee2a83938f7bbf1610c6b698a8dd2
--- /dev/null
+++ b/pfam_gap_rates/cobW.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/dsrm.gap.json b/pfam_gap_rates/dsrm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d934e659d350ca7363303c1d88ca79b7bbaa33e
--- /dev/null
+++ b/pfam_gap_rates/dsrm.gap.json
@@ -0,0 +1 @@
+{"family": "dsrm", "n_seqs": 4721, "length": 73, "gap_rates": [0.3630586740097437, 0.20461766574878204, 0.1529337004871849, 0.12179622961237026, 0.1046388477017581, 0.10188519381486973, 0.09849608133869943, 0.9233213302266469, 0.08832874391018852, 0.0853632704935395, 0.08430417284473629, 0.07689048930311375, 0.07710230883287439, 0.06566405422579961, 0.6456259267104427, 0.08430417284473629, 0.05655581444609193, 0.04977758949375132, 0.0453293793687778, 0.041304808303325564, 0.03897479347595848, 0.053166701969921626, 0.0400338911247617, 0.06757042999364542, 0.03495022241050625, 0.023511967803431476, 0.019699216267739884, 0.016521923321330227, 0.08027960177928405, 0.0785850455411989, 0.11777165854691803, 0.7970768904893031, 0.09298877356492269, 0.02033467485702182, 0.0069900444821012495, 0.002753653886888371, 0.0019063757678457953, 0.0008472781190425757, 0.00021181952976064393, 0.004448210124973522, 0.004024571065452235, 0.9466214785003177, 0.9317941114170727, 0.06757042999364542, 0.008260961660665114, 0.0065664054225799615, 0.006354585892819318, 0.006142766363058674, 0.14255454352891336, 0.9275577208218597, 0.002965473416649015, 0.0021181952976064393, 0.0019063757678457953, 0.0019063757678457953, 0.004024571065452235, 0.9241686083456895, 0.003389112476170303, 0.0038127515356915906, 0.002753653886888371, 0.003177292946409659, 0.003389112476170303, 0.003600932005930947, 0.004660029654734167, 0.005083668714255455, 0.005719127303537386, 0.006778224952340606, 0.008472781190425757, 0.010590976488032196, 0.020122855327261175, 0.037068417708112686, 0.1503918661300572, 0.33679305231942386, 0.5136623596695615], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/fn3_5.gap.json b/pfam_gap_rates/fn3_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0f3e74c125f2cc6f8601681485c3b6fea0d3172
--- /dev/null
+++ b/pfam_gap_rates/fn3_5.gap.json
@@ -0,0 +1 @@
+{"family": "fn3_5", "n_seqs": 515, "length": 144, "gap_rates": [0.7669902912621359, 0.45436893203883494, 0.3300970873786408, 0.31650485436893205, 0.3029126213592233, 0.30097087378640774, 0.8427184466019417, 0.2912621359223301, 0.27184466019417475, 0.24660194174757283, 0.5883495145631068, 0.16310679611650486, 0.12427184466019417, 0.1087378640776699, 0.0970873786407767, 0.09514563106796116, 0.08932038834951456, 0.08932038834951456, 0.06990291262135923, 0.06796116504854369, 0.06796116504854369, 0.05631067961165048, 0.05436893203883495, 0.05242718446601942, 0.05242718446601942, 0.05242718446601942, 0.04660194174757282, 0.04466019417475728, 0.04466019417475728, 0.04271844660194175, 0.04271844660194175, 0.04271844660194175, 0.038834951456310676, 0.8815533980582524, 0.9067961165048544, 0.8233009708737864, 0.2815533980582524, 0.07961165048543689, 0.062135922330097085, 0.062135922330097085, 0.05436893203883495, 0.04466019417475728, 0.8640776699029126, 0.9223300970873787, 0.9398058252427185, 0.8912621359223301, 0.8310679611650486, 0.05825242718446602, 0.3048543689320388, 0.3339805825242718, 0.11067961165048544, 0.07572815533980583, 0.04271844660194175, 0.04271844660194175, 0.05436893203883495, 0.062135922330097085, 0.07378640776699029, 0.04660194174757282, 0.04854368932038835, 0.06407766990291262, 0.05436893203883495, 0.12233009708737864, 0.19223300970873786, 0.2563106796116505, 0.39029126213592236, 0.23300970873786409, 0.5553398058252427, 0.7592233009708738, 0.8601941747572815, 0.9048543689320389, 0.9378640776699029, 0.916504854368932, 0.8854368932038835, 0.8, 0.6563106796116505, 0.4524271844660194, 0.17475728155339806, 0.021359223300970873, 0.013592233009708738, 0.009708737864077669, 0.005825242718446602, 0.003883495145631068, 0.005825242718446602, 0.005825242718446602, 0.005825242718446602, 0.003883495145631068, 0.003883495145631068, 0.0, 0.0, 0.001941747572815534, 0.001941747572815534, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.1786407766990291, 0.021359223300970873, 0.14563106796116504, 0.08349514563106795, 0.07766990291262135, 0.0854368932038835, 0.7805825242718447, 0.8368932038834952, 0.8524271844660194, 0.9145631067961165, 0.8407766990291262, 0.8077669902912621, 0.7359223300970874, 0.20194174757281552, 0.1669902912621359, 0.04271844660194175, 0.007766990291262136, 0.005825242718446602, 0.005825242718446602, 0.005825242718446602, 0.005825242718446602, 0.007766990291262136, 0.007766990291262136, 0.007766990291262136, 0.009708737864077669, 0.009708737864077669, 0.011650485436893204, 0.015533980582524271, 0.031067961165048542, 0.03300970873786408, 0.036893203883495145, 0.941747572815534, 0.8970873786407767, 0.6893203883495146, 0.5766990291262136, 0.15922330097087378, 0.11650485436893204, 0.1203883495145631, 0.1262135922330097, 0.1436893203883495, 0.15728155339805824, 0.5184466019417475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/hGDE_central.gap.json b/pfam_gap_rates/hGDE_central.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95e55d098761842af30b47d7758111a8b77cb92c
--- /dev/null
+++ b/pfam_gap_rates/hGDE_central.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ig.gap.json b/pfam_gap_rates/ig.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f85e3665f0257e0bb4821e98850adcec20bec39
--- /dev/null
+++ b/pfam_gap_rates/ig.gap.json
@@ -0,0 +1 @@
+{"family": "ig", "n_seqs": 1333, "length": 110, "gap_rates": [0.8432108027006752, 0.6939234808702176, 0.5581395348837209, 0.43960990247561893, 0.36459114778694673, 0.291072768192048, 0.21680420105026257, 0.16429107276819205, 0.1207801950487622, 0.09902475618904726, 0.07351837959489872, 0.06376594148537135, 0.05326331582895724, 0.04801200300075019, 0.046511627906976744, 0.04276069017254314, 0.04126031507876969, 0.04126031507876969, 0.04051012753188297, 0.04051012753188297, 0.8042010502625656, 0.8769692423105776, 0.687171792948237, 0.5063765941485371, 0.3023255813953488, 0.0690172543135784, 0.0555138784696174, 0.05026256564141035, 0.030007501875468866, 0.024006001500375095, 0.018754688672168042, 0.0172543135783946, 0.016504126031507877, 0.016504126031507877, 0.016504126031507877, 0.0172543135783946, 0.016504126031507877, 0.018754688672168042, 0.015753938484621154, 0.018754688672168042, 0.0172543135783946, 0.018754688672168042, 0.01800450112528132, 0.025506376594148537, 0.02625656414103526, 0.6939234808702176, 0.7614403600900225, 0.8319579894973743, 0.8844711177794449, 0.9279819954988747, 0.9474868717179294, 0.9377344336084021, 0.905476369092273, 0.8552138034508627, 0.8102025506376594, 0.7239309827456865, 0.6609152288072018, 0.5551387846961741, 0.45461365341335336, 0.3833458364591148, 0.33833458364591146, 0.23780945236309078, 0.18529632408102026, 0.13203300825206302, 0.12003000750187547, 0.07501875468867217, 0.05701425356339085, 0.05476369092273068, 0.00900225056264066, 0.8259564891222806, 0.8552138034508627, 0.8769692423105776, 0.9092273068267067, 0.9369842460615154, 0.8874718679669917, 0.8672168042010503, 0.8402100525131283, 0.8042010502625656, 0.006751687921980495, 0.008252063015753939, 0.007501875468867217, 0.00900225056264066, 0.00900225056264066, 0.007501875468867217, 0.007501875468867217, 0.008252063015753939, 0.008252063015753939, 0.03075768942235559, 0.028507126781695424, 0.02175543885971493, 0.02250562640660165, 0.9062265566391597, 0.008252063015753939, 0.00900225056264066, 0.012003000750187547, 0.014253563390847712, 0.02175543885971493, 0.03975993998499625, 0.08777194298574643, 0.1342835708927232, 0.17179294823705926, 0.25131282820705175, 0.3075768942235559, 0.36834208552138037, 0.43210802700675166, 0.5056264066016504, 0.5783945986496624, 0.6781695423855963, 0.7606901725431358, 0.8739684921230307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/mRNA_cap_C.gap.json b/pfam_gap_rates/mRNA_cap_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66262c126356835aa617a3db1061fbe1ab025a0d
--- /dev/null
+++ b/pfam_gap_rates/mRNA_cap_C.gap.json
@@ -0,0 +1 @@
+{"family": "mRNA_cap_C", "n_seqs": 355, "length": 160, "gap_rates": [0.2591549295774648, 0.15492957746478872, 0.12394366197183099, 0.12112676056338029, 0.12112676056338029, 0.12112676056338029, 0.12112676056338029, 0.12112676056338029, 0.12112676056338029, 0.12112676056338029, 0.6028169014084507, 0.6112676056338028, 0.6112676056338028, 0.6309859154929578, 0.7352112676056338, 0.7661971830985915, 0.7887323943661971, 0.8056338028169014, 0.8676056338028169, 0.7971830985915493, 0.7774647887323943, 0.7492957746478873, 0.6647887323943662, 0.6225352112676056, 0.6112676056338028, 0.6112676056338028, 0.6028169014084507, 0.14929577464788732, 0.23098591549295774, 0.6845070422535211, 0.5183098591549296, 0.4788732394366197, 0.4563380281690141, 0.4394366197183099, 0.4450704225352113, 0.43661971830985913, 0.4197183098591549, 0.4112676056338028, 0.39436619718309857, 0.9295774647887324, 0.38591549295774646, 0.3380281690140845, 0.16338028169014085, 0.16056338028169015, 0.16056338028169015, 0.16056338028169015, 0.15774647887323945, 0.752112676056338, 0.8140845070422535, 0.9352112676056338, 0.9464788732394366, 0.8704225352112676, 0.7971830985915493, 0.5661971830985916, 0.2056338028169014, 0.2028169014084507, 0.19154929577464788, 0.14366197183098592, 0.11549295774647887, 0.09859154929577464, 0.09295774647887324, 0.07887323943661972, 0.07887323943661972, 0.07605633802816901, 0.07887323943661972, 0.07605633802816901, 0.1267605633802817, 0.11267605633802817, 0.7408450704225352, 0.5605633802816902, 0.5211267605633803, 0.1267605633802817, 0.11830985915492957, 0.9183098591549296, 0.9464788732394366, 0.9352112676056338, 0.8873239436619719, 0.1295774647887324, 0.12394366197183099, 0.16338028169014085, 0.1267605633802817, 0.15774647887323945, 0.1323943661971831, 0.07887323943661972, 0.6845070422535211, 0.9154929577464789, 0.6450704225352113, 0.036619718309859155, 0.02535211267605634, 0.022535211267605635, 0.01971830985915493, 0.016901408450704224, 0.014084507042253521, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.011267605633802818, 0.011267605633802818, 0.008450704225352112, 0.014084507042253521, 0.036619718309859155, 0.6084507042253521, 0.24788732394366197, 0.8873239436619719, 0.8873239436619719, 0.8873239436619719, 0.8901408450704226, 0.8929577464788733, 0.895774647887324, 0.923943661971831, 0.9295774647887324, 0.9464788732394366, 0.9464788732394366, 0.9323943661971831, 0.923943661971831, 0.9014084507042254, 0.8929577464788733, 0.8929577464788733, 0.8901408450704226, 0.8873239436619719, 0.8873239436619719, 0.8873239436619719, 0.008450704225352112, 0.008450704225352112, 0.005633802816901409, 0.005633802816901409, 0.005633802816901409, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.005633802816901409, 0.011267605633802818, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.011267605633802818, 0.016901408450704224, 0.01971830985915493, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.030985915492957747, 0.03380281690140845, 0.04507042253521127, 0.07887323943661972, 0.4450704225352113], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/mRNA_cap_enzyme.gap.json b/pfam_gap_rates/mRNA_cap_enzyme.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d65985055ba11f0ef65756c1339d9c8b9a91f51
--- /dev/null
+++ b/pfam_gap_rates/mRNA_cap_enzyme.gap.json
@@ -0,0 +1 @@
+{"family": "mRNA_cap_enzyme", "n_seqs": 459, "length": 217, "gap_rates": [0.3311546840958606, 0.2679738562091503, 0.25054466230936817, 0.24618736383442266, 0.2374727668845316, 0.22875816993464052, 0.22440087145969498, 0.2178649237472767, 0.21350762527233116, 0.20915032679738563, 0.20915032679738563, 0.2047930283224401, 0.20261437908496732, 0.20043572984749455, 0.20043572984749455, 0.17647058823529413, 0.1655773420479303, 0.1655773420479303, 0.1568627450980392, 0.15468409586056645, 0.15250544662309368, 0.15250544662309368, 0.14596949891067537, 0.14596949891067537, 0.14596949891067537, 0.14596949891067537, 0.14596949891067537, 0.1437908496732026, 0.14814814814814814, 0.1328976034858388, 0.13071895424836602, 0.13071895424836602, 0.13071895424836602, 0.12854030501089325, 0.13071895424836602, 0.12854030501089325, 0.47276688453159044, 0.6688453159041394, 0.8583877995642701, 0.934640522875817, 0.9259259259259259, 0.7276688453159041, 0.6666666666666666, 0.420479302832244, 0.2984749455337691, 0.1328976034858388, 0.12854030501089325, 0.12854030501089325, 0.12636165577342048, 0.12418300653594772, 0.12636165577342048, 0.12200435729847495, 0.12200435729847495, 0.11982570806100218, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.12418300653594772, 0.9477124183006536, 0.35076252723311546, 0.13725490196078433, 0.1394335511982571, 0.12418300653594772, 0.12200435729847495, 0.12854030501089325, 0.13071895424836602, 0.1328976034858388, 0.2549019607843137, 0.6514161220043573, 0.6034858387799564, 0.5250544662309368, 0.9128540305010894, 0.9433551198257081, 0.9215686274509803, 0.840958605664488, 0.4793028322440087, 0.27450980392156865, 0.22657952069716775, 0.1568627450980392, 0.12854030501089325, 0.12418300653594772, 0.1111111111111111, 0.10893246187363835, 0.10893246187363835, 0.10893246187363835, 0.10893246187363835, 0.1111111111111111, 0.12200435729847495, 0.11982570806100218, 0.1111111111111111, 0.11982570806100218, 0.11764705882352941, 0.11328976034858387, 0.11982570806100218, 0.12636165577342048, 0.14814814814814814, 0.8932461873638344, 0.9302832244008714, 0.906318082788671, 0.7080610021786492, 0.3420479302832244, 0.3355119825708061, 0.18518518518518517, 0.12854030501089325, 0.11328976034858387, 0.10893246187363835, 0.1111111111111111, 0.1111111111111111, 0.10893246187363835, 0.10893246187363835, 0.10893246187363835, 0.11328976034858387, 0.11328976034858387, 0.11546840958605664, 0.11328976034858387, 0.1111111111111111, 0.11328976034858387, 0.1111111111111111, 0.11328976034858387, 0.11328976034858387, 0.11328976034858387, 0.11546840958605664, 0.11546840958605664, 0.11546840958605664, 0.11546840958605664, 0.11546840958605664, 0.11546840958605664, 0.11546840958605664, 0.11546840958605664, 0.11764705882352941, 0.12636165577342048, 0.12200435729847495, 0.13071895424836602, 0.13071895424836602, 0.1328976034858388, 0.12854030501089325, 0.12854030501089325, 0.1328976034858388, 0.12854030501089325, 0.13507625272331156, 0.13507625272331156, 0.13725490196078433, 0.14596949891067537, 0.15250544662309368, 0.8126361655773421, 0.8758169934640523, 0.8954248366013072, 0.9455337690631809, 0.8888888888888888, 0.8583877995642701, 0.7712418300653595, 0.2178649237472767, 0.21568627450980393, 0.20261437908496732, 0.18082788671023964, 0.1655773420479303, 0.16122004357298475, 0.15904139433551198, 0.2113289760348584, 0.19389978213507625, 0.1437908496732026, 0.13071895424836602, 0.12636165577342048, 0.12200435729847495, 0.11328976034858387, 0.11546840958605664, 0.11764705882352941, 0.11982570806100218, 0.11982570806100218, 0.12200435729847495, 0.12200435729847495, 0.12418300653594772, 0.12636165577342048, 0.12636165577342048, 0.12854030501089325, 0.13507625272331156, 0.13071895424836602, 0.1394335511982571, 0.6862745098039216, 0.2657952069716776, 0.1830065359477124, 0.1895424836601307, 0.16122004357298475, 0.15468409586056645, 0.14814814814814814, 0.14814814814814814, 0.14596949891067537, 0.1437908496732026, 0.1437908496732026, 0.14161220043572983, 0.1394335511982571, 0.13725490196078433, 0.1394335511982571, 0.1394335511982571, 0.1394335511982571, 0.1394335511982571, 0.1394335511982571, 0.1394335511982571, 0.1394335511982571, 0.14814814814814814, 0.15904139433551198, 0.23311546840958605, 0.16339869281045752, 0.1655773420479303, 0.17429193899782136, 0.1786492374727669, 0.1786492374727669, 0.18082788671023964, 0.18518518518518517, 0.19172113289760348, 0.19825708061002179, 0.19825708061002179, 0.20261437908496732, 0.20697167755991286, 0.20915032679738563, 0.2440087145969499], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/rve_3.gap.json b/pfam_gap_rates/rve_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37e9ddcc4446fdf7b732e28c666114548c8af1dd
--- /dev/null
+++ b/pfam_gap_rates/rve_3.gap.json
@@ -0,0 +1 @@
+{"family": "rve_3", "n_seqs": 1185, "length": 68, "gap_rates": [0.8843881856540085, 0.38734177215189874, 0.32236286919831225, 0.2970464135021097, 0.26919831223628693, 0.2371308016877637, 0.19071729957805908, 0.17046413502109706, 0.15780590717299578, 0.150210970464135, 0.13670886075949368, 0.13248945147679325, 0.13164556962025317, 0.11223628691983123, 0.1029535864978903, 0.09451476793248945, 0.09113924050632911, 0.08776371308016878, 0.07341772151898734, 0.06751054852320675, 0.06497890295358649, 0.059915611814345994, 0.056540084388185655, 0.04810126582278481, 0.04556962025316456, 0.04050632911392405, 0.0379746835443038, 0.036286919831223625, 0.036286919831223625, 0.032067510548523206, 0.030379746835443037, 0.02869198312236287, 0.029535864978902954, 0.021940928270042195, 0.020253164556962026, 0.8860759493670886, 0.016877637130801686, 0.05485232067510549, 0.012658227848101266, 0.01181434599156118, 0.010970464135021098, 0.010970464135021098, 0.010970464135021098, 0.012658227848101266, 0.012658227848101266, 0.010970464135021098, 0.010970464135021098, 0.01350210970464135, 0.016877637130801686, 0.016033755274261603, 0.015189873417721518, 0.016033755274261603, 0.017721518987341773, 0.017721518987341773, 0.02109704641350211, 0.02109704641350211, 0.029535864978902954, 0.03713080168776371, 0.036286919831223625, 0.043037974683544304, 0.04556962025316456, 0.046413502109704644, 0.06497890295358649, 0.0751054852320675, 0.08691983122362869, 0.10042194092827005, 0.11476793248945148, 0.1358649789029536], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_1d.gap.json b/pfam_gap_rates/tRNA-synt_1d.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34be72b7988b359c0e9ec3af0144b23cf795eb12
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_1d.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA-synt_1d", "n_seqs": 3210, "length": 384, "gap_rates": [0.8376947040498443, 0.7672897196261682, 0.7105919003115265, 0.6691588785046729, 0.6457943925233645, 0.6264797507788162, 0.6034267912772585, 0.5841121495327103, 0.5644859813084112, 0.5457943925233645, 0.5526479750778817, 0.7152647975077882, 0.5015576323987538, 0.4124610591900312, 0.3601246105919003, 0.305607476635514, 0.2632398753894081, 0.22398753894080997, 0.19345794392523363, 0.17102803738317757, 0.16043613707165108, 0.15202492211838006, 0.14922118380062305, 0.14641744548286603, 0.14610591900311526, 0.14610591900311526, 0.1454828660436137, 0.14517133956386294, 0.14485981308411214, 0.14517133956386294, 0.14517133956386294, 0.14485981308411214, 0.14485981308411214, 0.14485981308411214, 0.14174454828660435, 0.14174454828660435, 0.14174454828660435, 0.1411214953271028, 0.1411214953271028, 0.1411214953271028, 0.1411214953271028, 0.1411214953271028, 0.14174454828660435, 0.14143302180685358, 0.1411214953271028, 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\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_synt_1c_R1.gap.json b/pfam_gap_rates/tRNA_synt_1c_R1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7b465e34d3054a69333a8e8252a9fb47b11dfc6
--- /dev/null
+++ b/pfam_gap_rates/tRNA_synt_1c_R1.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_synt_1c_R1", "n_seqs": 232, "length": 168, "gap_rates": [0.8275862068965517, 0.5043103448275862, 0.3879310344827586, 0.2672413793103448, 0.1853448275862069, 0.14224137931034483, 0.11637931034482758, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.09913793103448276, 0.09913793103448276, 0.09913793103448276, 0.09913793103448276, 0.09913793103448276, 0.09913793103448276, 0.09913793103448276, 0.09913793103448276, 0.09913793103448276, 0.10344827586206896, 0.09913793103448276, 0.11637931034482758, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.09913793103448276, 0.09913793103448276, 0.09482758620689655, 0.09913793103448276, 0.09482758620689655, 0.09482758620689655, 0.09913793103448276, 0.09482758620689655, 0.09051724137931035, 0.09051724137931035, 0.09051724137931035, 0.5, 0.9353448275862069, 0.8275862068965517, 0.22844827586206898, 0.16379310344827586, 0.07327586206896551, 0.07327586206896551, 0.06896551724137931, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.896551724137931, 0.9224137931034483, 0.875, 0.07327586206896551, 0.12931034482758622, 0.21551724137931033, 0.14655172413793102, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.06465517241379311, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.03879310344827586, 0.04310344827586207, 0.0603448275862069, 0.03879310344827586, 0.05172413793103448, 0.03879310344827586, 0.034482758620689655, 0.03017241379310345, 0.017241379310344827, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.8836206896551724, 0.3620689655172414, 0.1336206896551724, 0.06896551724137931, 0.0603448275862069, 0.03017241379310345, 0.03017241379310345, 0.03017241379310345, 0.03017241379310345, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.03017241379310345, 0.03017241379310345, 0.03017241379310345, 0.03017241379310345, 0.03017241379310345, 0.03017241379310345, 0.03017241379310345, 0.03017241379310345, 0.04310344827586207, 0.04741379310344827, 0.04741379310344827, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.0603448275862069, 0.05172413793103448, 0.05603448275862069, 0.06465517241379311, 0.0603448275862069, 0.07758620689655173, 0.06465517241379311, 0.16379310344827586, 0.16379310344827586, 0.15948275862068967, 0.14224137931034483, 0.06465517241379311, 0.3620689655172414, 0.06465517241379311, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.06465517241379311, 0.6853448275862069, 0.6422413793103449, 0.07327586206896551, 0.07327586206896551, 0.07327586206896551, 0.07327586206896551, 0.07327586206896551, 0.08189655172413793, 0.08189655172413793, 0.3232758620689655], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-3CxxC.gap.json b/pfam_gap_rates/zf-3CxxC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9afedb7d20328262130c91ef33e9fde1a022d45
--- /dev/null
+++ b/pfam_gap_rates/zf-3CxxC.gap.json
@@ -0,0 +1 @@
+{"family": "zf-3CxxC", "n_seqs": 181, "length": 142, "gap_rates": [0.8066298342541437, 0.23204419889502761, 0.0718232044198895, 0.04419889502762431, 0.03867403314917127, 0.03314917127071823, 0.03314917127071823, 0.027624309392265192, 0.022099447513812154, 0.8066298342541437, 0.8011049723756906, 0.06629834254143646, 0.027624309392265192, 0.022099447513812154, 0.027624309392265192, 0.022099447513812154, 0.8232044198895028, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.2596685082872928, 0.2541436464088398, 0.2430939226519337, 0.2430939226519337, 0.287292817679558, 0.287292817679558, 0.35911602209944754, 0.39779005524861877, 0.580110497237569, 0.44751381215469616, 0.4198895027624309, 0.8453038674033149, 0.9392265193370166, 0.8950276243093923, 0.8011049723756906, 0.15469613259668508, 0.11049723756906077, 0.07734806629834254, 0.0718232044198895, 0.055248618784530384, 0.055248618784530384, 0.055248618784530384, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.03867403314917127, 0.5966850828729282, 0.8950276243093923, 0.9281767955801105, 0.9060773480662984, 0.8895027624309392, 0.5524861878453039, 0.2265193370165746, 0.2265193370165746, 0.20994475138121546, 0.20994475138121546, 0.055248618784530384, 0.055248618784530384, 0.07734806629834254, 0.08839779005524862, 0.08839779005524862, 0.11049723756906077, 0.10497237569060773, 0.09944751381215469, 0.8895027624309392, 0.11602209944751381, 0.11049723756906077, 0.11602209944751381, 0.11602209944751381, 0.12154696132596685, 0.13259668508287292, 0.1270718232044199, 0.13812154696132597, 0.15469613259668508, 0.16022099447513813, 0.8011049723756906, 0.8232044198895028, 0.8176795580110497, 0.7955801104972375, 0.17679558011049723, 0.1878453038674033, 0.18232044198895028, 0.1712707182320442, 0.16022099447513813, 0.14917127071823205, 0.15469613259668508, 0.16574585635359115, 0.19337016574585636, 0.5193370165745856, 0.5580110497237569, 0.6022099447513812, 0.6519337016574586, 0.7679558011049724, 0.856353591160221, 0.9226519337016574, 0.8729281767955801, 0.7845303867403315, 0.7071823204419889, 0.6187845303867403, 0.5966850828729282, 0.5359116022099447, 0.5193370165745856, 0.18232044198895028, 0.27071823204419887, 0.6740331491712708, 0.24861878453038674, 0.2596685082872928, 0.2596685082872928, 0.6574585635359116, 0.6464088397790055, 0.56353591160221, 0.8453038674033149, 0.850828729281768, 0.8895027624309392, 0.9171270718232044, 0.9447513812154696, 0.9116022099447514, 0.850828729281768, 0.850828729281768, 0.8397790055248618, 0.18232044198895028, 0.18232044198895028, 0.18232044198895028, 0.18232044198895028, 0.19337016574585636, 0.19337016574585636, 0.19889502762430938, 0.20441988950276244, 0.20994475138121546, 0.2154696132596685, 0.3259668508287293, 0.5248618784530387], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C2H2.gap.json b/pfam_gap_rates/zf-C2H2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4a59b9a8b0e285f1a0ddcccb848640afa2ad03c9
--- /dev/null
+++ b/pfam_gap_rates/zf-C2H2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C2H2", "n_seqs": 5000, "length": 23, "gap_rates": [0.053, 0.0188, 0.0006, 0.0004, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002, 0.0038, 0.0082, 0.0096], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C4H2.gap.json b/pfam_gap_rates/zf-C4H2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6dc90851040df6aefde3b5b2f8b922aabff401ea
--- /dev/null
+++ b/pfam_gap_rates/zf-C4H2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CHY.gap.json b/pfam_gap_rates/zf-CHY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13084378a09ceac7d5e931c4104646f4ec2f96e1
--- /dev/null
+++ b/pfam_gap_rates/zf-CHY.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CHY", "n_seqs": 759, "length": 102, "gap_rates": [0.06455862977602109, 0.05138339920948617, 0.05006587615283267, 0.048748353096179184, 0.048748353096179184, 0.04743083003952569, 0.04479578392621871, 0.8801054018445322, 0.8814229249011858, 0.5876152832674572, 0.04084321475625823, 0.03689064558629776, 0.034255599472990776, 0.030303030303030304, 0.026350461133069828, 0.022397891963109356, 0.019762845849802372, 0.019762845849802372, 0.017127799736495388, 0.01844532279314888, 0.017127799736495388, 0.01844532279314888, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.01844532279314888, 0.017127799736495388, 0.8102766798418972, 0.8287220026350461, 0.8432147562582345, 0.8511198945981555, 0.8906455862977603, 0.847167325428195, 0.8405797101449275, 0.8234519104084321, 0.8010540184453228, 0.019762845849802372, 0.03162055335968379, 0.9499341238471674, 0.02766798418972332, 0.017127799736495388, 0.9446640316205533, 0.013175230566534914, 0.014492753623188406, 0.04084321475625823, 0.01844532279314888, 0.043478260869565216, 0.03689064558629776, 0.02766798418972332, 0.04743083003952569, 0.05138339920948617, 0.03162055335968379, 0.06982872200263504, 0.03820816864295125, 0.11857707509881422, 0.11725955204216074, 0.11989459815546773, 0.11594202898550725, 0.1225296442687747, 0.12384716732542819, 0.1541501976284585, 0.15678524374176547, 0.08563899868247694, 0.8853754940711462, 0.077733860342556, 0.07509881422924901, 0.08168642951251646, 0.08432147562582346, 0.09881422924901186, 0.11462450592885376, 0.14361001317523056, 0.08168642951251646, 0.8748353096179183, 0.8748353096179183, 0.06587615283267458, 0.8840579710144928, 0.03689064558629776, 0.03293807641633729, 0.8432147562582345, 0.9459815546772069, 0.9486166007905138, 0.9393939393939394, 0.8142292490118577, 0.048748353096179184, 0.10013175230566534, 0.11330698287220026, 0.1383399209486166, 0.17786561264822134, 0.8827404479578392, 0.8985507246376812, 0.9341238471673254, 0.8840579710144928, 0.8827404479578392, 0.3227931488801054, 0.19894598155467721, 0.2028985507246377, 0.2028985507246377, 0.2028985507246377, 0.22002635046113306, 0.308300395256917, 0.9011857707509882], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-DBF.gap.json b/pfam_gap_rates/zf-DBF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..808e293516eb5b21e7c053d6e69e66164a70e2c3
--- /dev/null
+++ b/pfam_gap_rates/zf-DBF.gap.json
@@ -0,0 +1 @@
+{"family": "zf-DBF", "n_seqs": 229, "length": 45, "gap_rates": [0.6157205240174672, 0.17903930131004367, 0.06550218340611354, 0.039301310043668124, 0.013100436681222707, 0.008733624454148471, 0.008733624454148471, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.017467248908296942, 0.013100436681222707, 0.09606986899563319, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.048034934497816595, 0.048034934497816595, 0.048034934497816595, 0.056768558951965066, 0.0611353711790393, 0.0611353711790393, 0.07860262008733625, 0.11790393013100436, 0.21397379912663755, 0.5807860262008734], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-DHHC.gap.json b/pfam_gap_rates/zf-DHHC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d523d59b09e37cd2eb08a2972c579e4c7519eee
--- /dev/null
+++ b/pfam_gap_rates/zf-DHHC.gap.json
@@ -0,0 +1 @@
+{"family": "zf-DHHC", "n_seqs": 4012, "length": 154, "gap_rates": [0.9359421734795613, 0.7926221335992024, 0.5441176470588235, 0.3798604187437687, 0.1909272183449651, 0.10992023928215354, 0.09571286141575275, 0.09322033898305085, 0.08923230309072781, 0.08748753738783649, 0.08574277168494517, 0.08075772681954138, 0.07153539381854436, 0.06729810568295115, 0.06331006979062812, 0.05807577268195414, 0.056580259222333, 0.05408773678963111, 0.05284147557328016, 0.051096709870388834, 0.0496011964107677, 0.04935194416749751, 0.04910269192422732, 0.04810568295114656, 0.046610169491525424, 0.04511465603190429, 0.04436689930209372, 0.04436689930209372, 0.04436689930209372, 0.04361914257228315, 0.03265204386839481, 0.03339980059820538, 0.03414755732801595, 0.03464606181455633, 0.03514456630109671, 0.03090727816550349, 0.028664007976071784, 0.028165503489531406, 0.03115653040877368, 0.03215353938185444, 0.032402791625124626, 0.03414755732801595, 0.03664007976071785, 0.03863409770687936, 0.04112662013958126, 0.042123629112662014, 0.0423728813559322, 0.04312063808574277, 0.04287138584247258, 0.043369890329012964, 0.05408773678963111, 0.0496011964107677, 0.047856430707876374, 0.046610169491525424, 0.04636091724825524, 0.046610169491525424, 0.04760717846460618, 0.04810568295114656, 0.049850448654037885, 0.05059820538384845, 0.05309072781655035, 0.05259222333000997, 0.05134596211365902, 0.05309072781655035, 0.05508474576271186, 0.05782652043868395, 0.06181455633100698, 0.06455633100697906, 0.06655034895314058, 0.07278165503489531, 0.07652043868394816, 0.0800099700897308, 0.08624127617148554, 0.09247258225324027, 0.09247258225324027, 0.09695912263210368, 0.09895314057826521, 0.09995014955134596, 0.10194416749750748, 0.10493519441674976, 0.10568295114656032, 0.12313060817547358, 0.14107676969092722, 0.13683948155533399, 0.14057826520438685, 0.2220837487537388, 0.22507477567298106, 0.30957128614157525, 0.34571286141575275, 0.39980059820538383, 0.4833000997008973, 0.49476570289132604, 0.6650049850448654, 0.6951645064805583, 0.734297108673978, 0.7719341974077767, 0.825024925224327, 0.8492023928215354, 0.8664007976071785, 0.8910767696909272, 0.9125124626121635, 0.9389332003988036, 0.9469092721834497, 0.9444167497507477, 0.9287138584247259, 0.8978065802592223, 0.8801096709870389, 0.8586739780658026, 0.8332502492522432, 0.8138085742771685, 0.7507477567298105, 0.713110667996012, 0.6807078763708874, 0.6465603190428714, 0.4309571286141575, 0.3367397806580259, 0.2310568295114656, 0.13185443668993022, 0.12761714855433698, 0.12462612163509472, 0.1248753738783649, 0.1226321036889332, 0.12437686939182453, 0.12412761714855433, 0.12163509471585245, 0.12138584247258226, 0.12188434695912263, 0.1228813559322034, 0.12362911266201396, 0.12362911266201396, 0.12462612163509472, 0.12686939182452642, 0.12886340977068794, 0.1296111665004985, 0.13160518444666003, 0.13110667996011965, 0.13110667996011965, 0.13285144566301096, 0.13285144566301096, 0.13409770687936193, 0.13584247258225324, 0.13783649052841476, 0.14107676969092722, 0.14456630109670987, 0.146061814556331, 0.1510468594217348, 0.15378863409770688, 0.15877367896311068, 0.16176470588235295, 0.1702392821535394, 0.19042871385842472, 0.24675972083748754, 0.41774675972083747, 0.7534895314057827], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-H2C2_2.gap.json b/pfam_gap_rates/zf-H2C2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68fce0b7e69cde7231928c63aa7998193626ce5f
--- /dev/null
+++ b/pfam_gap_rates/zf-H2C2_2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-H2C2_2", "n_seqs": 712, "length": 26, "gap_rates": [0.14185393258426968, 0.0028089887640449437, 0.0014044943820224719, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.018258426966292134, 0.07443820224719101, 0.6980337078651685], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RING-like.gap.json b/pfam_gap_rates/zf-RING-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df0bed1efe266b2a12fa050410ad6bdf0ae3c30d
--- /dev/null
+++ b/pfam_gap_rates/zf-RING-like.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RING-like", "n_seqs": 178, "length": 44, "gap_rates": [0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.011235955056179775, 0.0056179775280898875, 0.0, 0.0056179775280898875, 0.0056179775280898875, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2247191011235955, 0.2247191011235955, 0.0056179775280898875, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.12921348314606743, 0.11235955056179775, 0.03932584269662921, 0.028089887640449437, 0.0449438202247191, 0.7865168539325843, 0.11235955056179775, 0.08426966292134831, 0.033707865168539325, 0.05056179775280899, 0.06741573033707865, 0.10112359550561797], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RING_4.gap.json b/pfam_gap_rates/zf-RING_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c81008f6b454b74d4ab651d812bb31b72ad75de8
--- /dev/null
+++ b/pfam_gap_rates/zf-RING_4.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RING_4", "n_seqs": 501, "length": 55, "gap_rates": [0.15768463073852296, 0.11776447105788423, 0.09181636726546906, 0.09181636726546906, 0.08582834331337326, 0.08183632734530938, 0.07984031936127745, 0.05389221556886228, 0.8163672654690619, 0.8143712574850299, 0.06387225548902195, 0.05389221556886228, 0.0499001996007984, 0.0499001996007984, 0.0499001996007984, 0.04790419161676647, 0.04590818363273453, 0.031936127744510975, 0.01996007984031936, 0.01996007984031936, 0.01996007984031936, 0.01996007984031936, 0.015968063872255488, 0.00998003992015968, 0.003992015968063872, 0.015968063872255488, 0.01996007984031936, 0.01996007984031936, 0.013972055888223553, 0.015968063872255488, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.013972055888223553, 0.017964071856287425, 0.8283433133732535, 0.8682634730538922, 0.872255489021956, 0.8662674650698603, 0.8043912175648703, 0.15568862275449102, 0.0658682634730539, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.017964071856287425, 0.01996007984031936, 0.02594810379241517, 0.2155688622754491], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-UDP.gap.json b/pfam_gap_rates/zf-UDP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9f219093897dddb2c8d866c0924063d3e7c3ab6
--- /dev/null
+++ b/pfam_gap_rates/zf-UDP.gap.json
@@ -0,0 +1 @@
+{"family": "zf-UDP", "n_seqs": 261, "length": 78, "gap_rates": [0.49808429118773945, 0.3371647509578544, 0.2950191570881226, 0.2413793103448276, 0.20689655172413793, 0.15708812260536398, 0.09961685823754789, 0.0842911877394636, 0.038314176245210725, 0.02681992337164751, 0.019157088122605363, 0.01532567049808429, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.01532567049808429, 0.01532567049808429, 0.01532567049808429, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.011494252873563218, 0.011494252873563218, 0.007662835249042145, 0.0038314176245210726, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.007662835249042145, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.0038314176245210726, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.01532567049808429, 0.01532567049808429, 0.03065134099616858, 0.06130268199233716, 0.06896551724137931, 0.07662835249042145, 0.0842911877394636, 0.0842911877394636, 0.08812260536398467, 0.09195402298850575, 0.08812260536398467, 0.08812260536398467, 0.08812260536398467, 0.08812260536398467, 0.08812260536398467, 0.10727969348659004, 0.13026819923371646, 0.24521072796934865, 0.7739463601532567], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-ZPR1.gap.json b/pfam_gap_rates/zf-ZPR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7655a9891ebcccefbe141a9dbc9961ce93e0cc1
--- /dev/null
+++ b/pfam_gap_rates/zf-ZPR1.gap.json
@@ -0,0 +1 @@
+{"family": "zf-ZPR1", "n_seqs": 730, "length": 197, "gap_rates": [0.5712328767123288, 0.14246575342465753, 0.11232876712328767, 0.10821917808219178, 0.10821917808219178, 0.10821917808219178, 0.19041095890410958, 0.8753424657534247, 0.11232876712328767, 0.11232876712328767, 0.1, 0.09452054794520548, 0.09315068493150686, 0.09315068493150686, 0.08767123287671233, 0.08767123287671233, 0.08356164383561644, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0863013698630137, 0.08493150684931507, 0.0821917808219178, 0.07945205479452055, 0.07808219178082192, 0.07808219178082192, 0.07808219178082192, 0.07671232876712329, 0.06575342465753424, 0.06575342465753424, 0.06712328767123288, 0.06575342465753424, 0.06712328767123288, 0.06575342465753424, 0.0821917808219178, 0.06301369863013699, 0.06301369863013699, 0.06027397260273973, 0.06027397260273973, 0.0589041095890411, 0.057534246575342465, 0.056164383561643834, 0.056164383561643834, 0.05342465753424658, 0.052054794520547946, 0.05342465753424658, 0.052054794520547946, 0.050684931506849315, 0.052054794520547946, 0.050684931506849315, 0.05342465753424658, 0.12465753424657534, 0.1136986301369863, 0.045205479452054796, 0.0410958904109589, 0.0410958904109589, 0.038356164383561646, 0.038356164383561646, 0.038356164383561646, 0.03972602739726028, 0.0410958904109589, 0.947945205479452, 0.9465753424657535, 0.052054794520547946, 0.045205479452054796, 0.04246575342465753, 0.043835616438356165, 0.03972602739726028, 0.03972602739726028, 0.03972602739726028, 0.0410958904109589, 0.03972602739726028, 0.043835616438356165, 0.043835616438356165, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.03972602739726028, 0.038356164383561646, 0.03561643835616438, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03287671232876712, 0.03287671232876712, 0.03424657534246575, 0.03287671232876712, 0.03287671232876712, 0.03424657534246575, 0.03424657534246575, 0.26301369863013696, 0.9191780821917809, 0.2136986301369863, 0.03287671232876712, 0.03287671232876712, 0.03287671232876712, 0.03424657534246575, 0.03287671232876712, 0.03424657534246575, 0.03561643835616438, 0.03561643835616438, 0.036986301369863014, 0.03561643835616438, 0.036986301369863014, 0.038356164383561646, 0.03561643835616438, 0.03561643835616438, 0.03287671232876712, 0.03287671232876712, 0.031506849315068496, 0.03287671232876712, 0.03287671232876712, 0.3698630136986301, 0.8780821917808219, 0.9191780821917809, 0.8863013698630137, 0.7657534246575343, 0.44794520547945205, 0.4794520547945205, 0.6383561643835617, 0.7904109589041096, 0.9013698630136986, 0.9301369863013699, 0.9493150684931507, 0.9438356164383561, 0.9232876712328767, 0.8849315068493151, 0.6589041095890411, 0.6136986301369863, 0.16712328767123288, 0.11917808219178082, 0.10410958904109589, 0.10273972602739725, 0.1, 0.1136986301369863, 0.12191780821917808, 0.6191780821917808, 0.9438356164383561, 0.5767123287671233, 0.22465753424657534, 0.236986301369863, 0.4767123287671233, 0.2726027397260274, 0.2095890410958904, 0.05342465753424658, 0.050684931506849315, 0.050684931506849315, 0.04794520547945205, 0.04657534246575343, 0.04657534246575343, 0.04794520547945205, 0.04794520547945205, 0.04794520547945205, 0.049315068493150684, 0.04794520547945205, 0.049315068493150684, 0.049315068493150684, 0.050684931506849315, 0.050684931506849315, 0.050684931506849315, 0.07671232876712329, 0.06301369863013699, 0.0589041095890411, 0.8931506849315068, 0.9356164383561644, 0.9410958904109589, 0.9452054794520548, 0.9465753424657535, 0.947945205479452, 0.947945205479452, 0.9493150684931507, 0.9493150684931507, 0.9493150684931507, 0.947945205479452, 0.947945205479452, 0.9452054794520548, 0.9438356164383561, 0.9383561643835616, 0.9082191780821918, 0.7178082191780822, 0.057534246575342465, 0.056164383561643834, 0.057534246575342465, 0.057534246575342465, 0.057534246575342465, 0.057534246575342465, 0.057534246575342465, 0.057534246575342465, 0.057534246575342465, 0.057534246575342465, 0.057534246575342465, 0.06027397260273973, 0.06164383561643835, 0.06575342465753424, 0.07945205479452055, 0.3287671232876712], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-dskA_traR.gap.json b/pfam_gap_rates/zf-dskA_traR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..276b5f0e941d5bfc012dddbda05fd0599cfb10e4
--- /dev/null
+++ b/pfam_gap_rates/zf-dskA_traR.gap.json
@@ -0,0 +1 @@
+{"family": "zf-dskA_traR", "n_seqs": 2173, "length": 38, "gap_rates": [0.3110906580763921, 0.18177634606534745, 0.08605614358030372, 0.05200184077312471, 0.013805798435342844, 0.9456971928209849, 0.922227335480902, 0.002300966405890474, 0.002300966405890474, 0.0013805798435342844, 0.0009203865623561896, 0.0009203865623561896, 0.0009203865623561896, 0.0004601932811780948, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0004601932811780948, 0.0, 0.0, 0.0, 0.0027611596870685687, 0.0, 0.0, 0.0013805798435342844, 0.010124252185918085, 0.011965025310630465, 0.014265991716520939, 0.04141739530602853, 0.1145881270133456, 0.1592268752876208, 0.21214910262310172, 0.3014265991716521, 0.3732167510354349, 0.42153704555913485, 0.6571560055223193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-rbx1.gap.json b/pfam_gap_rates/zf-rbx1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b743daadc8a2425958f2bc0dc880b818730080b
--- /dev/null
+++ b/pfam_gap_rates/zf-rbx1.gap.json
@@ -0,0 +1 @@
+{"family": "zf-rbx1", "n_seqs": 889, "length": 68, "gap_rates": [0.4735658042744657, 0.22272215973003376, 0.2047244094488189, 0.20359955005624297, 0.1923509561304837, 0.1889763779527559, 0.19122609673790777, 0.17997750281214847, 0.1687289088863892, 0.1529808773903262, 0.12598425196850394, 0.1203599550056243, 0.11136107986501688, 0.11023622047244094, 0.10348706411698538, 0.10686164229471316, 0.09898762654668167, 0.09448818897637795, 0.0922384701912261, 0.08661417322834646, 0.08998875140607424, 0.08773903262092239, 0.08886389201349831, 0.16422947131608548, 0.374578177727784, 0.47244094488188976, 0.8481439820022497, 0.8976377952755905, 0.9358830146231721, 0.9471316085489314, 0.9460067491563554, 0.9201349831271091, 0.8818897637795275, 0.8267716535433071, 0.421822272215973, 0.29358830146231724, 0.08211473565804274, 0.06299212598425197, 0.05174353205849269, 0.04499437570303712, 0.03487064116985377, 0.08998875140607424, 0.014623172103487065, 0.01124859392575928, 0.006749156355455568, 0.013498312710911136, 0.012373453318335208, 0.012373453318335208, 0.012373453318335208, 0.012373453318335208, 0.012373453318335208, 0.012373453318335208, 0.013498312710911136, 0.013498312710911136, 0.013498312710911136, 0.014623172103487065, 0.014623172103487065, 0.014623172103487065, 0.015748031496062992, 0.937007874015748, 0.019122609673790775, 0.021372328458942633, 0.02699662542182227, 0.02699662542182227, 0.02699662542182227, 0.02699662542182227, 0.03824521934758155, 0.1597300337457818], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-ribbon_3.gap.json b/pfam_gap_rates/zf-ribbon_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce5787a38567076004e15423009915ab93e8265c
--- /dev/null
+++ b/pfam_gap_rates/zf-ribbon_3.gap.json
@@ -0,0 +1 @@
+{"family": "zf-ribbon_3", "n_seqs": 245, "length": 27, "gap_rates": [0.889795918367347, 0.4326530612244898, 0.19591836734693877, 0.024489795918367346, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6816326530612244, 0.0, 0.27346938775510204, 0.004081632653061225, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004081632653061225, 0.012244897959183673, 0.1510204081632653, 0.33877551020408164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zinc_ribbon_12.gap.json b/pfam_gap_rates/zinc_ribbon_12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3671c3fb77c0e7ed7e2251a1f40565a0d63439ff
--- /dev/null
+++ b/pfam_gap_rates/zinc_ribbon_12.gap.json
@@ -0,0 +1 @@
+{"family": "zinc_ribbon_12", "n_seqs": 141, "length": 46, "gap_rates": [0.4326241134751773, 0.05673758865248227, 0.04964539007092199, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.0070921985815602835, 0.0070921985815602835, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8794326241134752, 0.0, 0.0, 0.0, 0.0, 0.0, 0.09219858156028368, 0.07092198581560284, 0.028368794326241134, 0.0425531914893617, 0.15602836879432624, 0.07092198581560284, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014184397163120567, 0.02127659574468085, 0.028368794326241134, 0.028368794326241134, 0.1276595744680851, 0.45390070921985815], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file