diff --git a/pfam_gap_rates/2OG-FeII_Oxy.gap.json b/pfam_gap_rates/2OG-FeII_Oxy.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c88f9e512a8f4cea4ed02a6e093543b7e053adf5
--- /dev/null
+++ b/pfam_gap_rates/2OG-FeII_Oxy.gap.json
@@ -0,0 +1 @@
+{"family": "2OG-FeII_Oxy", "n_seqs": 5000, "length": 122, "gap_rates": [0.917, 0.7648, 0.6362, 0.4606, 0.3434, 0.2668, 0.2078, 0.2018, 0.9338, 0.267, 0.1644, 0.1514, 0.1416, 0.9084, 0.9278, 0.8772, 0.138, 0.1402, 0.1368, 0.135, 0.1832, 0.8026, 0.9138, 0.8666, 0.7396, 0.0922, 0.0746, 0.0726, 0.0542, 0.0366, 0.034, 0.033, 0.0324, 0.0316, 0.0302, 0.0292, 0.0294, 0.0282, 0.0272, 0.0272, 0.0258, 0.0248, 0.0246, 0.0234, 0.0306, 0.6984, 0.0794, 0.0202, 0.0186, 0.0172, 0.019, 0.0224, 0.0804, 0.771, 0.0746, 0.0228, 0.8108, 0.9182, 0.941, 0.89, 0.7214, 0.0202, 0.0218, 0.7316, 0.0198, 0.0198, 0.0194, 0.019, 0.0184, 0.0196, 0.0416, 0.04, 0.0294, 0.0272, 0.0232, 0.0234, 0.0234, 0.021, 0.0202, 0.0204, 0.0222, 0.0286, 0.0338, 0.0354, 0.0348, 0.0424, 0.0448, 0.0474, 0.0482, 0.05, 0.0498, 0.0514, 0.0656, 0.052, 0.0524, 0.0524, 0.052, 0.0528, 0.0592, 0.8086, 0.5362, 0.075, 0.0666, 0.0694, 0.1342, 0.128, 0.208, 0.803, 0.9238, 0.946, 0.8628, 0.7906, 0.075, 0.0762, 0.0778, 0.0788, 0.0862, 0.095, 0.1206, 0.1948, 0.3938, 0.5628], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/2OG-FeII_Oxy_3.gap.json b/pfam_gap_rates/2OG-FeII_Oxy_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..758884459fbe8f0d80d9db29a01ecf96230a5e36
--- /dev/null
+++ b/pfam_gap_rates/2OG-FeII_Oxy_3.gap.json
@@ -0,0 +1 @@
+{"family": "2OG-FeII_Oxy_3", "n_seqs": 3108, "length": 156, "gap_rates": [0.740990990990991, 0.34234234234234234, 0.19047619047619047, 0.1583011583011583, 0.13996138996138996, 0.12548262548262548, 0.8751608751608752, 0.10456885456885456, 0.09266409266409266, 0.08558558558558559, 0.06016731016731017, 0.05855855855855856, 0.04633204633204633, 0.039897039897039896, 0.026705276705276705, 0.016409266409266408, 0.015444015444015444, 0.015444015444015444, 0.019626769626769628, 0.11261261261261261, 0.32882882882882886, 0.5025740025740025, 0.6698841698841699, 0.7664092664092664, 0.8381595881595881, 0.9047619047619048, 0.9391891891891891, 0.9330759330759331, 0.8658301158301158, 0.7944015444015444, 0.7380952380952381, 0.5534105534105535, 0.45592020592020593, 0.34234234234234234, 0.3104890604890605, 0.13577863577863578, 0.07239382239382239, 0.16602316602316602, 0.026705276705276705, 0.019948519948519948, 0.00933075933075933, 0.008365508365508366, 0.0074002574002574005, 0.007078507078507079, 0.0074002574002574005, 0.007078507078507079, 0.005791505791505791, 0.005148005148005148, 0.0045045045045045045, 0.07046332046332046, 0.5302445302445302, 0.9333976833976834, 0.693050193050193, 0.4848777348777349, 0.09073359073359073, 0.01673101673101673, 0.8873873873873874, 0.021235521235521235, 0.006435006435006435, 0.005791505791505791, 0.006113256113256113, 0.006435006435006435, 0.8986486486486487, 0.9009009009009009, 0.9202059202059202, 0.9375804375804376, 0.946911196911197, 0.9491634491634492, 0.9456241956241956, 0.9340411840411841, 0.9047619047619048, 0.8999356499356499, 0.8976833976833977, 0.0035392535392535394, 0.08075933075933076, 0.0826898326898327, 0.4362934362934363, 0.3001930501930502, 0.28635778635778636, 0.17857142857142858, 0.07561132561132561, 0.49324324324324326, 0.6042471042471043, 0.6824324324324325, 0.7168597168597168, 0.7545045045045045, 0.7937580437580437, 0.833976833976834, 0.8523166023166023, 0.915057915057915, 0.9411196911196911, 0.9481981981981982, 0.9279279279279279, 0.8806306306306306, 0.8413770913770914, 0.814993564993565, 0.7738095238095238, 0.7323037323037324, 0.7023809523809523, 0.6486486486486487, 0.5733590733590733, 0.3893178893178893, 0.03796653796653797, 0.027992277992277992, 0.026061776061776062, 0.020913770913770915, 0.019626769626769628, 0.024774774774774775, 0.013191763191763193, 0.010939510939510939, 0.008365508365508366, 0.008043758043758044, 0.008365508365508366, 0.006756756756756757, 0.0074002574002574005, 0.006756756756756757, 0.007722007722007722, 0.007722007722007722, 0.008687258687258687, 0.2335907335907336, 0.25418275418275416, 0.07110682110682111, 0.4369369369369369, 0.3027670527670528, 0.6097168597168597, 0.6315958815958816, 0.6444658944658944, 0.6824324324324325, 0.9417631917631918, 0.7258687258687259, 0.6463963963963963, 0.6364221364221364, 0.6126126126126126, 0.5788288288288288, 0.017696267696267698, 0.01833976833976834, 0.01833976833976834, 0.019948519948519948, 0.021879021879021878, 0.026383526383526385, 0.08172458172458172, 0.07561132561132561, 0.5366795366795367, 0.43983268983268986, 0.9494851994851995, 0.9327541827541828, 0.04086229086229086, 0.042149292149292146, 0.04407979407979408, 0.052123552123552123, 0.064993564993565, 0.18629343629343628, 0.21364221364221364, 0.24163449163449163, 0.29182754182754184, 0.6254826254826255], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/3Beta_HSD.gap.json b/pfam_gap_rates/3Beta_HSD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c2ec27a7c6f93b46ae103e47be4ac4e85f94f10
--- /dev/null
+++ b/pfam_gap_rates/3Beta_HSD.gap.json
@@ -0,0 +1 @@
+{"family": "3Beta_HSD", "n_seqs": 1220, "length": 309, "gap_rates": [0.3795081967213115, 0.20491803278688525, 0.19918032786885245, 0.19672131147540983, 0.19098360655737706, 0.18688524590163935, 0.18442622950819673, 0.18360655737704917, 0.1819672131147541, 0.1819672131147541, 0.18114754098360655, 0.18032786885245902, 0.17950819672131146, 0.17868852459016393, 0.17868852459016393, 0.17950819672131146, 0.17704918032786884, 0.1778688524590164, 0.17459016393442622, 0.17459016393442622, 0.17704918032786884, 0.38278688524590165, 0.9163934426229509, 0.830327868852459, 0.5426229508196722, 0.30655737704918035, 0.19672131147540983, 0.1942622950819672, 0.1901639344262295, 0.17540983606557378, 0.1860655737704918, 0.19508196721311474, 0.9098360655737705, 0.9221311475409836, 0.940983606557377, 0.930327868852459, 0.9204918032786885, 0.9057377049180327, 0.19508196721311474, 0.1885245901639344, 0.18770491803278688, 0.18442622950819673, 0.18688524590163935, 0.1959016393442623, 0.20327868852459016, 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\ No newline at end of file
diff --git a/pfam_gap_rates/5-FTHF_cyc-lig.gap.json b/pfam_gap_rates/5-FTHF_cyc-lig.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c86ec72e76f7088c0d53fcc08ba7b029e548619b
--- /dev/null
+++ b/pfam_gap_rates/5-FTHF_cyc-lig.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Sri.gap.json b/pfam_gap_rates/7TM_GPCR_Sri.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f9fd427793c81da04d46f9d826290f68a3ed82b
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Sri.gap.json
@@ -0,0 +1 @@
+{"family": "7TM_GPCR_Sri", "n_seqs": 125, "length": 307, "gap_rates": [0.816, 0.584, 0.52, 0.504, 0.504, 0.496, 0.496, 0.488, 0.472, 0.456, 0.424, 0.416, 0.4, 0.384, 0.368, 0.36, 0.352, 0.344, 0.344, 0.344, 0.344, 0.344, 0.344, 0.344, 0.344, 0.344, 0.344, 0.344, 0.344, 0.344, 0.344, 0.352, 0.352, 0.352, 0.352, 0.352, 0.352, 0.352, 0.352, 0.352, 0.352, 0.344, 0.336, 0.328, 0.328, 0.328, 0.32, 0.312, 0.288, 0.28, 0.28, 0.272, 0.28, 0.28, 0.264, 0.248, 0.24, 0.24, 0.232, 0.232, 0.232, 0.232, 0.224, 0.216, 0.2, 0.2, 0.2, 0.184, 0.184, 0.176, 0.176, 0.176, 0.168, 0.168, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.92, 0.216, 0.216, 0.184, 0.184, 0.264, 0.52, 0.392, 0.208, 0.2, 0.2, 0.2, 0.192, 0.184, 0.184, 0.184, 0.176, 0.176, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.168, 0.168, 0.168, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.184, 0.168, 0.168, 0.168, 0.176, 0.176, 0.176, 0.216, 0.224, 0.184, 0.176, 0.184, 0.184, 0.184, 0.208, 0.184, 0.192, 0.192, 0.2, 0.208, 0.208, 0.208, 0.216, 0.216, 0.208, 0.208, 0.208, 0.208, 0.216, 0.216, 0.224, 0.224, 0.224, 0.232, 0.248, 0.256, 0.256, 0.248, 0.248, 0.256, 0.256, 0.272, 0.288, 0.288, 0.288, 0.288, 0.296, 0.296, 0.304, 0.32, 0.336, 0.336, 0.32, 0.328, 0.32, 0.32, 0.32, 0.312, 0.52, 0.344, 0.328, 0.336, 0.328, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.792, 0.776, 0.32, 0.312, 0.312, 0.312, 0.312, 0.312, 0.32, 0.312, 0.312, 0.312, 0.312, 0.32, 0.328, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.328, 0.32, 0.328, 0.32, 0.344, 0.336, 0.344, 0.344, 0.336, 0.336, 0.336, 0.336, 0.344, 0.336, 0.336, 0.344, 0.344, 0.344, 0.344, 0.352, 0.36, 0.36, 0.36, 0.36, 0.344, 0.344, 0.328, 0.336, 0.328, 0.328, 0.328, 0.336, 0.336, 0.336, 0.336, 0.336, 0.336, 0.824, 0.336, 0.336, 0.336, 0.336, 0.344, 0.352, 0.328, 0.328, 0.336, 0.336, 0.328, 0.328, 0.328, 0.328, 0.328, 0.336, 0.336, 0.336, 0.336, 0.336, 0.336, 0.336, 0.336, 0.336, 0.328, 0.328, 0.328, 0.328, 0.328, 0.328, 0.328, 0.328, 0.328, 0.328, 0.328, 0.328, 0.336, 0.336, 0.336, 0.336, 0.336, 0.336, 0.336, 0.336, 0.336, 0.344, 0.344, 0.36, 0.36, 0.456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/7tm_2.gap.json b/pfam_gap_rates/7tm_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f27791d86f17808beed8fe5223ca3dd53084fb2
--- /dev/null
+++ b/pfam_gap_rates/7tm_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7tm_6.gap.json b/pfam_gap_rates/7tm_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68d9e24507aad1ff74042e385227c2ff8f21ff6b
--- /dev/null
+++ b/pfam_gap_rates/7tm_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA.gap.json b/pfam_gap_rates/AAA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea4a60c7707b061b41926108e6aef44e4dfa9011
--- /dev/null
+++ b/pfam_gap_rates/AAA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_13.gap.json b/pfam_gap_rates/AAA_13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98243577e2ea4c69ecb660b0c44f19c8bf0087a1
--- /dev/null
+++ b/pfam_gap_rates/AAA_13.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_24.gap.json b/pfam_gap_rates/AAA_24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4b354c7625d4b9f923057b6e392cb2bcf198491e
--- /dev/null
+++ b/pfam_gap_rates/AAA_24.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_30.gap.json b/pfam_gap_rates/AAA_30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9881711caf638d4ae5ff0c6e0cf9f46b67c6eb89
--- /dev/null
+++ b/pfam_gap_rates/AAA_30.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_34.gap.json b/pfam_gap_rates/AAA_34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e61b5be0e4dd8cb9db777b5707f724fb37577e7
--- /dev/null
+++ b/pfam_gap_rates/AAA_34.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_7.gap.json b/pfam_gap_rates/AAA_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..314c9c3ad2241fc0ce494c9fdccb63b4977aba24
--- /dev/null
+++ b/pfam_gap_rates/AAA_7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AATF-Che1.gap.json b/pfam_gap_rates/AATF-Che1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c733b1849afb3ee28096732bb74b77c864060b9
--- /dev/null
+++ b/pfam_gap_rates/AATF-Che1.gap.json
@@ -0,0 +1 @@
+{"family": "AATF-Che1", "n_seqs": 300, "length": 184, "gap_rates": [0.24333333333333335, 0.17333333333333334, 0.12, 0.10333333333333333, 0.09666666666666666, 0.06333333333333334, 0.056666666666666664, 0.056666666666666664, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.04666666666666667, 0.043333333333333335, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.023333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.9033333333333333, 0.016666666666666666, 0.06, 0.05333333333333334, 0.11, 0.11333333333333333, 0.11666666666666667, 0.10333333333333333, 0.12, 0.23333333333333334, 0.23333333333333334, 0.44, 0.9366666666666666, 0.95, 0.7933333333333333, 0.23, 0.15, 0.11666666666666667, 0.08, 0.056666666666666664, 0.043333333333333335, 0.043333333333333335, 0.03666666666666667, 0.03, 0.03666666666666667, 0.04, 0.04, 0.04, 0.043333333333333335, 0.04, 0.04, 0.04, 0.04, 0.03666666666666667, 0.03666666666666667, 0.03666666666666667, 0.03666666666666667, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03666666666666667, 0.4, 0.3566666666666667, 0.35, 0.34, 0.34, 0.43333333333333335, 0.32666666666666666, 0.15, 0.49, 0.57, 0.6133333333333333, 0.73, 0.74, 0.7433333333333333, 0.7566666666666667, 0.76, 0.78, 0.8, 0.8366666666666667, 0.85, 0.8766666666666667, 0.89, 0.8933333333333333, 0.91, 0.9166666666666666, 0.92, 0.93, 0.94, 0.9433333333333334, 0.9333333333333333, 0.92, 0.92, 0.9133333333333333, 0.9033333333333333, 0.89, 0.88, 0.86, 0.84, 0.83, 0.79, 0.7633333333333333, 0.76, 0.7566666666666667, 0.7433333333333333, 0.7366666666666667, 0.7266666666666667, 0.61, 0.6566666666666666, 0.5333333333333333, 0.48333333333333334, 0.5, 0.38333333333333336, 0.33666666666666667, 0.2866666666666667, 0.25333333333333335, 0.23, 0.18666666666666668, 0.15666666666666668, 0.13666666666666666, 0.13666666666666666, 0.14, 0.25333333333333335, 0.2733333333333333, 0.27666666666666667, 0.94, 0.19666666666666666, 0.16333333333333333, 0.17333333333333334, 0.14, 0.11666666666666667, 0.11, 0.10333333333333333, 0.1, 0.08333333333333333, 0.9466666666666667, 0.95, 0.9466666666666667, 0.9433333333333334, 0.13666666666666666, 0.09333333333333334, 0.1, 0.1, 0.09666666666666666, 0.09666666666666666, 0.09666666666666666, 0.09666666666666666, 0.09666666666666666, 0.09666666666666666, 0.09666666666666666, 0.09666666666666666, 0.09666666666666666, 0.09666666666666666, 0.09666666666666666, 0.10333333333333333, 0.10666666666666667, 0.10666666666666667, 0.11, 0.11, 0.11, 0.11, 0.11333333333333333, 0.11666666666666667, 0.14333333333333334, 0.16], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ADH_zinc_N_2.gap.json b/pfam_gap_rates/ADH_zinc_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..baf7cb616d0e6273f45705b689a4a4e5e5f39b3f
--- /dev/null
+++ b/pfam_gap_rates/ADH_zinc_N_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AIG1.gap.json b/pfam_gap_rates/AIG1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5473cce69a7852143be389094b770441553c0fd
--- /dev/null
+++ b/pfam_gap_rates/AIG1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AKAP7_NLS.gap.json b/pfam_gap_rates/AKAP7_NLS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7e717cf028a604807aab245f4ffd73415bda75d
--- /dev/null
+++ b/pfam_gap_rates/AKAP7_NLS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AMIN.gap.json b/pfam_gap_rates/AMIN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..889c350b4303d1df3ce3acf206aec39bb25fa03b
--- /dev/null
+++ b/pfam_gap_rates/AMIN.gap.json
@@ -0,0 +1 @@
+{"family": "AMIN", "n_seqs": 1230, "length": 114, "gap_rates": [0.6658536585365854, 0.5430894308943089, 0.4943089430894309, 0.4560975609756098, 0.42276422764227645, 0.3934959349593496, 0.33170731707317075, 0.2552845528455285, 0.1926829268292683, 0.13170731707317074, 0.8349593495934959, 0.07317073170731707, 0.05203252032520325, 0.044715447154471545, 0.04065040650406504, 0.03902439024390244, 0.03902439024390244, 0.03739837398373984, 0.8682926829268293, 0.03902439024390244, 0.06260162601626017, 0.025203252032520326, 0.01707317073170732, 0.013821138211382113, 0.012195121951219513, 0.00975609756097561, 0.008130081300813009, 0.00975609756097561, 0.00975609756097561, 0.9471544715447154, 0.9357723577235773, 0.014634146341463415, 0.012195121951219513, 0.0032520325203252032, 0.0024390243902439024, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.0008130081300813008, 0.0008130081300813008, 0.0032520325203252032, 0.0040650406504065045, 0.014634146341463415, 0.007317073170731708, 0.005691056910569106, 0.0065040650406504065, 0.005691056910569106, 0.0065040650406504065, 0.03414634146341464, 0.08780487804878048, 0.7008130081300813, 0.8447154471544716, 0.9455284552845529, 0.7504065040650406, 0.6203252032520326, 0.12926829268292683, 0.03170731707317073, 0.01869918699186992, 0.01707317073170732, 0.015447154471544716, 0.01788617886178862, 0.01869918699186992, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.011382113821138212, 0.011382113821138212, 0.011382113821138212, 0.5878048780487805, 0.01951219512195122, 0.2146341463414634, 0.1073170731707317, 0.23333333333333334, 0.9292682926829269, 0.8845528455284553, 0.02032520325203252, 0.015447154471544716, 0.013008130081300813, 0.013008130081300813, 0.013008130081300813, 0.013008130081300813, 0.013008130081300813, 0.013008130081300813, 0.013821138211382113, 0.013821138211382113, 0.014634146341463415, 0.01707317073170732, 0.15040650406504066, 0.9130081300813008, 0.8967479674796748, 0.07317073170731707, 0.06666666666666667, 0.08373983739837398, 0.09349593495934959, 0.4008130081300813, 0.7056910569105691, 0.7178861788617886, 0.6479674796747967, 0.45447154471544715, 0.424390243902439, 0.3333333333333333, 0.24796747967479674, 0.2252032520325203, 0.21951219512195122, 0.22682926829268293, 0.24308943089430896, 0.25365853658536586, 0.26747967479674795, 0.2894308943089431, 0.31382113821138213, 0.34065040650406503, 0.44146341463414634, 0.6414634146341464], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ANAPC1.gap.json b/pfam_gap_rates/ANAPC1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57aea5afeb285a044e54bac744496732024aaee2
--- /dev/null
+++ b/pfam_gap_rates/ANAPC1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ANAPC8.gap.json b/pfam_gap_rates/ANAPC8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e3bc22f26e06816888bd0c9e2ef3d622faf4dfa
--- /dev/null
+++ b/pfam_gap_rates/ANAPC8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/APG6.gap.json b/pfam_gap_rates/APG6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b38aaf22e2d071e751854bd8d2987d47f4d678b4
--- /dev/null
+++ b/pfam_gap_rates/APG6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/APH_6_hur.gap.json b/pfam_gap_rates/APH_6_hur.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7990bd4963a6589e41f42ade5c06ea7899a4f6b
--- /dev/null
+++ b/pfam_gap_rates/APH_6_hur.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/API5.gap.json b/pfam_gap_rates/API5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b3d0201dc6be01bec2e0315d713e3620a9952a0
--- /dev/null
+++ b/pfam_gap_rates/API5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/APP_amyloid.gap.json b/pfam_gap_rates/APP_amyloid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5cb7f0c8d5c0a75505c11d29639345aa4fd277ff
--- /dev/null
+++ b/pfam_gap_rates/APP_amyloid.gap.json
@@ -0,0 +1 @@
+{"family": "APP_amyloid", "n_seqs": 106, "length": 56, "gap_rates": [0.2169811320754717, 0.10377358490566038, 0.10377358490566038, 0.0660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.5, 0.25471698113207547, 0.2169811320754717, 0.1792452830188679, 0.1509433962264151, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.18867924528301888, 0.9056603773584906, 0.9150943396226415, 0.9056603773584906, 0.9056603773584906, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.018867924528301886, 0.02830188679245283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AP_endonuc_2_N.gap.json b/pfam_gap_rates/AP_endonuc_2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f059bcb52c9c01c168523b4d3e40d6cea1542294
--- /dev/null
+++ b/pfam_gap_rates/AP_endonuc_2_N.gap.json
@@ -0,0 +1 @@
+{"family": "AP_endonuc_2_N", "n_seqs": 615, "length": 56, "gap_rates": [0.27967479674796747, 0.027642276422764227, 0.02113821138211382, 0.01788617886178862, 0.0065040650406504065, 0.0032520325203252032, 0.0032520325203252032, 0.0032520325203252032, 0.0032520325203252032, 0.0032520325203252032, 0.0032520325203252032, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.0016260162601626016, 0.00975609756097561, 0.01788617886178862, 0.03414634146341464, 0.024390243902439025, 0.07317073170731707, 0.09268292682926829, 0.0959349593495935, 0.1008130081300813, 0.11219512195121951, 0.11219512195121951, 0.11544715447154472, 0.11382113821138211, 0.11219512195121951, 0.11382113821138211, 0.11544715447154472, 0.11544715447154472, 0.11707317073170732, 0.11869918699186992, 0.12032520325203253, 0.12682926829268293, 0.25691056910569104, 0.5934959349593496, 0.1902439024390244, 0.4959349593495935, 0.23739837398373984, 0.24227642276422764, 0.24878048780487805, 0.25365853658536586, 0.2634146341463415, 0.26666666666666666, 0.2682926829268293, 0.27154471544715447, 0.2731707317073171, 0.2780487804878049, 0.3235772357723577], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ARL2_Bind_BART.gap.json b/pfam_gap_rates/ARL2_Bind_BART.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4db57deccaaa8bfbb8c9f998a44348790bd5536
--- /dev/null
+++ b/pfam_gap_rates/ARL2_Bind_BART.gap.json
@@ -0,0 +1 @@
+{"family": "ARL2_Bind_BART", "n_seqs": 241, "length": 137, "gap_rates": [0.8713692946058091, 0.5062240663900415, 0.31950207468879666, 0.25311203319502074, 0.1991701244813278, 0.1825726141078838, 0.16597510373443983, 0.15352697095435686, 0.13692946058091288, 0.13278008298755187, 0.12033195020746888, 0.11203319502074689, 0.1078838174273859, 0.1078838174273859, 0.0995850622406639, 0.0912863070539419, 0.08713692946058091, 0.08713692946058091, 0.1037344398340249, 0.08298755186721991, 0.07468879668049792, 0.07053941908713693, 0.06224066390041494, 0.06224066390041494, 0.06224066390041494, 0.058091286307053944, 0.058091286307053944, 0.058091286307053944, 0.05394190871369295, 0.05394190871369295, 0.04979253112033195, 0.04149377593360996, 0.03734439834024896, 0.03319502074688797, 0.03319502074688797, 0.921161825726141, 0.05394190871369295, 0.8340248962655602, 0.91701244813278, 0.9294605809128631, 0.8464730290456431, 0.8340248962655602, 0.04149377593360996, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.029045643153526972, 0.029045643153526972, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.029045643153526972, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.6929460580912863, 0.029045643153526972, 0.024896265560165973, 0.03319502074688797, 0.03734439834024896, 0.03734439834024896, 0.7136929460580913, 0.03319502074688797, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.029045643153526972, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.7925311203319502, 0.8215767634854771, 0.8755186721991701, 0.9128630705394191, 0.941908713692946, 0.941908713692946, 0.91701244813278, 0.9045643153526971, 0.8506224066390041, 0.8008298755186722, 0.7800829875518672, 0.49377593360995853, 0.35269709543568467, 0.3070539419087137, 0.11203319502074689, 0.058091286307053944, 0.06639004149377593, 0.06639004149377593, 0.07053941908713693, 0.91701244813278, 0.8049792531120332, 0.06639004149377593, 0.13278008298755187, 0.11618257261410789, 0.04564315352697095, 0.04564315352697095, 0.04979253112033195, 0.04564315352697095, 0.9045643153526971, 0.04564315352697095, 0.04979253112033195, 0.05394190871369295, 0.058091286307053944, 0.06224066390041494, 0.058091286307053944, 0.06224066390041494, 0.06639004149377593, 0.06639004149377593, 0.06639004149377593, 0.06224066390041494, 0.06224066390041494, 0.06224066390041494, 0.06224066390041494, 0.06639004149377593, 0.06639004149377593, 0.07053941908713693, 0.0954356846473029, 0.11618257261410789, 0.15352697095435686, 0.1908713692946058, 0.26141078838174275, 0.3236514522821577, 0.3900414937759336], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATG22.gap.json b/pfam_gap_rates/ATG22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1daf5ce4e763fc8697829358860ac29daa6ecc35
--- /dev/null
+++ b/pfam_gap_rates/ATG22.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATG7_N.gap.json b/pfam_gap_rates/ATG7_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd47ea6ac77f278715ec13e6693a0d4b0f488226
--- /dev/null
+++ b/pfam_gap_rates/ATG7_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-gua_PtransN.gap.json b/pfam_gap_rates/ATP-gua_PtransN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f07fb29c1b1ada85cd01a76bf8d794bdd286ae78
--- /dev/null
+++ b/pfam_gap_rates/ATP-gua_PtransN.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-gua_PtransN", "n_seqs": 404, "length": 78, "gap_rates": [0.8539603960396039, 0.3465346534653465, 0.2103960396039604, 0.16584158415841585, 0.13861386138613863, 0.12871287128712872, 0.10148514851485149, 0.10148514851485149, 0.09405940594059406, 0.09653465346534654, 0.08663366336633663, 0.9381188118811881, 0.9356435643564357, 0.08415841584158416, 0.08415841584158416, 0.08168316831683169, 0.07673267326732673, 0.07425742574257425, 0.07425742574257425, 0.07178217821782178, 0.07425742574257425, 0.07178217821782178, 0.07178217821782178, 0.07178217821782178, 0.09158415841584158, 0.09158415841584158, 0.09405940594059406, 0.06435643564356436, 0.0594059405940594, 0.05693069306930693, 0.04950495049504951, 0.04455445544554455, 0.04455445544554455, 0.039603960396039604, 0.034653465346534656, 0.03217821782178218, 0.0297029702970297, 0.034653465346534656, 0.034653465346534656, 0.039603960396039604, 0.04455445544554455, 0.04207920792079208, 0.027227722772277228, 0.5866336633663366, 0.5891089108910891, 0.5866336633663366, 0.5841584158415841, 0.04455445544554455, 0.017326732673267328, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.01485148514851485, 0.01485148514851485, 0.017326732673267328, 0.01485148514851485, 0.017326732673267328, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.022277227722772276, 0.022277227722772276, 0.022277227722772276, 0.022277227722772276, 0.03217821782178218, 0.03217821782178218, 0.03217821782178218, 0.034653465346534656, 0.04207920792079208, 0.04702970297029703, 0.06930693069306931, 0.49504950495049505], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_A.gap.json b/pfam_gap_rates/ATP-synt_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c54553121ae99fec85dfc0a03ca8afb121e8473b
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_A.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_A", "n_seqs": 2035, "length": 271, "gap_rates": [0.8511056511056511, 0.4152334152334152, 0.24373464373464374, 0.15282555282555282, 0.10466830466830467, 0.08157248157248158, 0.07321867321867322, 0.06928746928746929, 0.06683046683046683, 0.06732186732186732, 0.06633906633906633, 0.06683046683046683, 0.9017199017199017, 0.06584766584766585, 0.06633906633906633, 0.06535626535626536, 0.08894348894348894, 0.06633906633906633, 0.06633906633906633, 0.0628992628992629, 0.07223587223587223, 0.13611793611793613, 0.07714987714987714, 0.30073710073710075, 0.9321867321867322, 0.28452088452088453, 0.15085995085995085, 0.12088452088452088, 0.9071253071253071, 0.9375921375921376, 0.7542997542997543, 0.056511056511056514, 0.055036855036855035, 0.05552825552825553, 0.05552825552825553, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05257985257985258, 0.052088452088452086, 0.05110565110565111, 0.04963144963144963, 0.04963144963144963, 0.04963144963144963, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_G.gap.json b/pfam_gap_rates/ATP-synt_G.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdb0407bea6817c509a9c8eb19104f3dd83416fe
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_G.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_S1.gap.json b/pfam_gap_rates/ATP-synt_S1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50e2a11be4e172a6c40d41c102fee85e83263760
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_S1.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_S1", "n_seqs": 119, "length": 167, "gap_rates": [0.7647058823529411, 0.5630252100840336, 0.4957983193277311, 0.42016806722689076, 0.37815126050420167, 0.4369747899159664, 0.42857142857142855, 0.7058823529411765, 0.5966386554621849, 0.36134453781512604, 0.25210084033613445, 0.23529411764705882, 0.226890756302521, 0.2184873949579832, 0.21008403361344538, 0.20168067226890757, 0.20168067226890757, 0.19327731092436976, 0.19327731092436976, 0.19327731092436976, 0.19327731092436976, 0.19327731092436976, 0.19327731092436976, 0.18487394957983194, 0.18487394957983194, 0.18487394957983194, 0.19327731092436976, 0.226890756302521, 0.21008403361344538, 0.865546218487395, 0.9411764705882353, 0.907563025210084, 0.8487394957983193, 0.7394957983193278, 0.7058823529411765, 0.4957983193277311, 0.226890756302521, 0.2184873949579832, 0.19327731092436976, 0.9159663865546218, 0.20168067226890757, 0.15966386554621848, 0.14285714285714285, 0.13445378151260504, 0.13445378151260504, 0.13445378151260504, 0.11764705882352941, 0.48739495798319327, 0.08403361344537816, 0.08403361344537816, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.08403361344537816, 0.2689075630252101, 0.4789915966386555, 0.48739495798319327, 0.47058823529411764, 0.42857142857142855, 0.6050420168067226, 0.7142857142857143, 0.7899159663865546, 0.7647058823529411, 0.6386554621848739, 0.6050420168067226, 0.2773109243697479, 0.24369747899159663, 0.2184873949579832, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.06722689075630252, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.8319327731092437, 0.8907563025210085, 0.907563025210084, 0.8907563025210085, 0.8487394957983193, 0.7983193277310925, 0.16806722689075632, 0.058823529411764705, 0.05042016806722689, 0.8823529411764706, 0.03361344537815126, 0.03361344537815126, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.9327731092436975, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.058823529411764705, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.10084033613445378, 0.11764705882352941, 0.15126050420168066, 0.19327731092436976, 0.24369747899159663, 0.8067226890756303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP12.gap.json b/pfam_gap_rates/ATP12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1dbe8227fa8e91158c6394edfd4319b00cb596a
--- /dev/null
+++ b/pfam_gap_rates/ATP12.gap.json
@@ -0,0 +1 @@
+{"family": "ATP12", "n_seqs": 499, "length": 161, "gap_rates": [0.2625250501002004, 0.12625250501002003, 0.12024048096192384, 0.11823647294589178, 0.11222444889779559, 0.11022044088176353, 0.10420841683366733, 0.10420841683366733, 0.10420841683366733, 0.3406813627254509, 0.41082164328657317, 0.503006012024048, 0.9418837675350702, 0.9198396793587175, 0.3867735470941884, 0.13226452905811623, 0.13026052104208416, 0.06813627254509018, 0.9398797595190381, 0.9458917835671342, 0.9318637274549099, 0.05410821643286573, 0.04809619238476954, 0.04609218436873747, 0.04208416833667335, 0.04208416833667335, 0.04208416833667335, 0.04208416833667335, 0.04208416833667335, 0.04208416833667335, 0.04208416833667335, 0.04208416833667335, 0.04208416833667335, 0.04208416833667335, 0.04208416833667335, 0.9078156312625251, 0.04208416833667335, 0.04008016032064128, 0.04008016032064128, 0.04008016032064128, 0.036072144288577156, 0.036072144288577156, 0.03406813627254509, 0.03206412825651302, 0.03206412825651302, 0.028056112224448898, 0.026052104208416832, 0.7394789579158316, 0.7394789579158316, 0.02404809619238477, 0.022044088176352707, 0.022044088176352707, 0.022044088176352707, 0.022044088176352707, 0.022044088176352707, 0.022044088176352707, 0.022044088176352707, 0.022044088176352707, 0.022044088176352707, 0.8376753507014028, 0.8537074148296593, 0.845691382765531, 0.7555110220440882, 0.02004008016032064, 0.03006012024048096, 0.03006012024048096, 0.036072144288577156, 0.03006012024048096, 0.1523046092184369, 0.026052104208416832, 0.022044088176352707, 0.022044088176352707, 0.02004008016032064, 0.014028056112224449, 0.014028056112224449, 0.014028056112224449, 0.01603206412825651, 0.02004008016032064, 0.02404809619238477, 0.026052104208416832, 0.026052104208416832, 0.028056112224448898, 0.028056112224448898, 0.028056112224448898, 0.02404809619238477, 0.6132264529058116, 0.19438877755511022, 0.1062124248496994, 0.561122244488978, 0.531062124248497, 0.08216432865731463, 0.8076152304609219, 0.8156312625250501, 0.8857715430861723, 0.9178356713426854, 0.9318637274549099, 0.9478957915831663, 0.9238476953907816, 0.8897795591182365, 0.8797595190380761, 0.8096192384769539, 0.8016032064128257, 0.04208416833667335, 0.03006012024048096, 0.026052104208416832, 0.026052104208416832, 0.02404809619238477, 0.02404809619238477, 0.026052104208416832, 0.026052104208416832, 0.026052104208416832, 0.02404809619238477, 0.02404809619238477, 0.02404809619238477, 0.02404809619238477, 0.02404809619238477, 0.026052104208416832, 0.026052104208416832, 0.02404809619238477, 0.022044088176352707, 0.02404809619238477, 0.02404809619238477, 0.026052104208416832, 0.028056112224448898, 0.7875751503006012, 0.8557114228456913, 0.8577154308617234, 0.8697394789579158, 0.9218436873747495, 0.9378757515030061, 0.9458917835671342, 0.9278557114228457, 0.8837675350701403, 0.8637274549098196, 0.8557114228456913, 0.8356713426853707, 0.7595190380761523, 0.7414829659318637, 0.11222444889779559, 0.0841683366733467, 0.07615230460921844, 0.04809619238476954, 0.04809619238476954, 0.04809619238476954, 0.04809619238476954, 0.04809619238476954, 0.04809619238476954, 0.04809619238476954, 0.050100200400801605, 0.052104208416833664, 0.05410821643286573, 0.06012024048096192, 0.06012024048096192, 0.06212424849699399, 0.06212424849699399, 0.06212424849699399, 0.06212424849699399, 0.07214428857715431, 0.07615230460921844, 0.11222444889779559, 0.6472945891783567], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP_bind_2.gap.json b/pfam_gap_rates/ATP_bind_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b226d8e105d6c37bc35c5340756b92ce622cef1
--- /dev/null
+++ b/pfam_gap_rates/ATP_bind_2.gap.json
@@ -0,0 +1 @@
+{"family": "ATP_bind_2", "n_seqs": 1405, "length": 290, "gap_rates": [0.5444839857651246, 0.2604982206405694, 0.1288256227758007, 0.09679715302491103, 0.09466192170818505, 0.09466192170818505, 0.09395017793594305, 0.09323843416370106, 0.08896797153024912, 0.08896797153024912, 0.08896797153024912, 0.08825622775800712, 0.08825622775800712, 0.08825622775800712, 0.08825622775800712, 0.08825622775800712, 0.08896797153024912, 0.08683274021352314, 0.08683274021352314, 0.08683274021352314, 0.08398576512455516, 0.08398576512455516, 0.08398576512455516, 0.08327402135231317, 0.08327402135231317, 0.08327402135231317, 0.08398576512455516, 0.08398576512455516, 0.08398576512455516, 0.08398576512455516, 0.08327402135231317, 0.08256227758007118, 0.08256227758007118, 0.08256227758007118, 0.08327402135231317, 0.08327402135231317, 0.08327402135231317, 0.08327402135231317, 0.08469750889679716, 0.08398576512455516, 0.08469750889679716, 0.08469750889679716, 0.08540925266903915, 0.08540925266903915, 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\ No newline at end of file
diff --git a/pfam_gap_rates/A_deaminase.gap.json b/pfam_gap_rates/A_deaminase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3d7deaa7917d858c5e3a500f9059589cdb070e3
--- /dev/null
+++ b/pfam_gap_rates/A_deaminase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_11.gap.json b/pfam_gap_rates/Acetyltransf_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db91be63e463b4df90dbb6465516813420a50763
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_11.gap.json
@@ -0,0 +1 @@
+{"family": "Acetyltransf_11", "n_seqs": 1083, "length": 88, "gap_rates": [0.028624192059095107, 0.00554016620498615, 0.00554016620498615, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0332409972299169, 0.00554016620498615, 0.9464450600184672, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0, 0.0, 0.023084025854108958, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.003693444136657433, 0.003693444136657433, 0.00554016620498615, 0.007386888273314866, 0.007386888273314866, 0.007386888273314866, 0.009233610341643583, 0.009233610341643583, 0.009233610341643583, 0.009233610341643583, 0.0110803324099723, 0.012003693444136657, 0.012003693444136657, 0.012927054478301015, 0.014773776546629732, 0.9270544783010157, 0.017543859649122806, 0.020313942751615882, 0.04524469067405355, 0.020313942751615882, 0.019390581717451522, 0.018467220683287166, 0.019390581717451522, 0.018467220683287166, 0.018467220683287166, 0.018467220683287166, 0.019390581717451522, 0.019390581717451522, 0.9242843951985226, 0.9021237303785781, 0.02123730378578024, 0.18005540166204986, 0.06832871652816251, 0.06278855032317636, 0.036011080332409975, 0.03970452446906741, 0.03139427516158818, 0.029547553093259463, 0.027700831024930747, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.9270544783010157, 0.027700831024930747, 0.8808864265927978, 0.04524469067405355, 0.06832871652816251, 0.07202216066481995, 0.1172668513388735, 0.1837488457987073, 0.46814404432132967], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_3.gap.json b/pfam_gap_rates/Acetyltransf_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be561a51a24c5ee9af8ba0a51295b9bea302690f
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_3.gap.json
@@ -0,0 +1 @@
+{"family": "Acetyltransf_3", "n_seqs": 5000, "length": 172, "gap_rates": [0.5692, 0.3636, 0.2422, 0.1816, 0.171, 0.1634, 0.1552, 0.1518, 0.144, 0.1382, 0.1328, 0.1564, 0.128, 0.1234, 0.1232, 0.9466, 0.1246, 0.9456, 0.1354, 0.9306, 0.1372, 0.1154, 0.1102, 0.1188, 0.1082, 0.1074, 0.8636, 0.117, 0.112, 0.1456, 0.9384, 0.126, 0.7032, 0.8648, 0.5022, 0.1158, 0.1458, 0.1104, 0.7652, 0.9492, 0.884, 0.6544, 0.1022, 0.09, 0.0876, 0.0802, 0.0726, 0.0694, 0.0678, 0.0662, 0.0634, 0.0626, 0.0626, 0.0626, 0.154, 0.2356, 0.8076, 0.9248, 0.852, 0.764, 0.1392, 0.1556, 0.17, 0.3602, 0.3718, 0.317, 0.205, 0.0624, 0.047, 0.935, 0.8806, 0.0686, 0.0536, 0.7876, 0.0268, 0.0248, 0.0234, 0.1218, 0.0658, 0.9096, 0.9394, 0.8484, 0.0314, 0.0452, 0.0442, 0.1896, 0.9166, 0.9396, 0.8476, 0.0154, 0.4616, 0.0122, 0.0108, 0.0106, 0.0108, 0.013, 0.0114, 0.011, 0.0362, 0.0234, 0.0226, 0.0224, 0.028, 0.0804, 0.1518, 0.2242, 0.8328, 0.9112, 0.9282, 0.8596, 0.6766, 0.0096, 0.008, 0.0072, 0.0074, 0.0074, 0.0072, 0.0072, 0.007, 0.931, 0.006, 0.006, 0.894, 0.0094, 0.0136, 0.0086, 0.0074, 0.0066, 0.0066, 0.0064, 0.0068, 0.0068, 0.007, 0.0074, 0.0082, 0.0082, 0.009, 0.0096, 0.01, 0.0104, 0.0114, 0.1196, 0.0332, 0.024, 0.0224, 0.9444, 0.065, 0.0252, 0.019, 0.0236, 0.015, 0.0162, 0.0162, 0.0164, 0.0172, 0.018, 0.0184, 0.0186, 0.019, 0.0192, 0.02, 0.021, 0.0208, 0.0228, 0.0236, 0.0246, 0.027, 0.0302, 0.0366, 0.051, 0.0964, 0.4478], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ada3.gap.json b/pfam_gap_rates/Ada3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..84aacdda57cf0f5a1fdc67a9141039aac464b824
--- /dev/null
+++ b/pfam_gap_rates/Ada3.gap.json
@@ -0,0 +1 @@
+{"family": "Ada3", "n_seqs": 235, "length": 174, "gap_rates": [0.774468085106383, 0.37872340425531914, 0.3404255319148936, 0.23829787234042554, 0.15319148936170213, 0.1148936170212766, 0.10212765957446808, 0.09787234042553192, 0.09787234042553192, 0.08936170212765958, 0.08936170212765958, 0.0851063829787234, 0.0851063829787234, 0.08085106382978724, 0.08085106382978724, 0.08085106382978724, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.8127659574468085, 0.8170212765957446, 0.8170212765957446, 0.825531914893617, 0.8595744680851064, 0.8638297872340426, 0.8893617021276595, 0.8978723404255319, 0.902127659574468, 0.9063829787234042, 0.9148936170212766, 0.9234042553191489, 0.9361702127659575, 0.948936170212766, 0.9276595744680851, 0.9191489361702128, 0.9106382978723404, 0.9063829787234042, 0.8978723404255319, 0.8936170212765957, 0.8808510638297873, 0.8638297872340426, 0.8468085106382979, 0.8170212765957446, 0.8170212765957446, 0.8127659574468085, 0.8127659574468085, 0.2170212765957447, 0.20425531914893616, 0.09361702127659574, 0.09361702127659574, 0.0851063829787234, 0.10638297872340426, 0.1702127659574468, 0.8893617021276595, 0.7617021276595745, 0.30638297872340425, 0.225531914893617, 0.06808510638297872, 0.03404255319148936, 0.02553191489361702, 0.02553191489361702, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.01702127659574468, 0.01276595744680851, 0.00851063829787234, 0.00851063829787234, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.01702127659574468, 0.02553191489361702, 0.02553191489361702, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.029787234042553193, 0.029787234042553193, 0.02553191489361702, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02553191489361702, 0.02553191489361702, 0.03404255319148936, 0.029787234042553193, 0.03404255319148936, 0.6595744680851063, 0.7276595744680852, 0.7659574468085106, 0.7574468085106383, 0.723404255319149, 0.6468085106382979, 0.03404255319148936, 0.05531914893617021, 0.059574468085106386, 0.06382978723404255, 0.07234042553191489, 0.07234042553191489, 0.07234042553191489, 0.07234042553191489, 0.07234042553191489, 0.0851063829787234, 0.11063829787234042, 0.17446808510638298, 0.225531914893617, 0.3276595744680851, 0.39148936170212767, 0.44680851063829785, 0.625531914893617, 0.6723404255319149, 0.7404255319148936, 0.8553191489361702, 0.8978723404255319, 0.8340425531914893, 0.7148936170212766, 0.6382978723404256, 0.6127659574468085, 0.5234042553191489, 0.5574468085106383, 0.5446808510638298, 0.5531914893617021, 0.5531914893617021, 0.5574468085106383, 0.574468085106383, 0.5702127659574469, 0.5829787234042553, 0.5872340425531914, 0.6, 0.6042553191489362, 0.6127659574468085, 0.6212765957446809, 0.6297872340425532, 0.6297872340425532, 0.6297872340425532, 0.6425531914893617, 0.6425531914893617, 0.6425531914893617, 0.6425531914893617, 0.6468085106382979, 0.6595744680851063], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AdenylateSensor.gap.json b/pfam_gap_rates/AdenylateSensor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d264f45ee993e8dc6801bf97bac8ef549679410
--- /dev/null
+++ b/pfam_gap_rates/AdenylateSensor.gap.json
@@ -0,0 +1 @@
+{"family": "AdenylateSensor", "n_seqs": 273, "length": 154, "gap_rates": [0.19047619047619047, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18681318681318682, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.19413919413919414, 0.21611721611721613, 0.28205128205128205, 0.4358974358974359, 0.9010989010989011, 0.9010989010989011, 0.9084249084249084, 0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9304029304029304, 0.9377289377289377, 0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9157509157509157, 0.9084249084249084, 0.9010989010989011, 0.9010989010989011, 0.6886446886446886, 0.7545787545787546, 0.6373626373626373, 0.42124542124542125, 0.32967032967032966, 0.326007326007326, 0.31135531135531136, 0.315018315018315, 0.315018315018315, 0.32234432234432236, 0.3443223443223443, 0.37362637362637363, 0.3956043956043956, 0.3956043956043956, 0.4358974358974359, 0.4432234432234432, 0.5824175824175825, 0.63003663003663, 0.9487179487179487, 0.9413919413919414, 0.5787545787545788, 0.5787545787545788, 0.5311355311355311, 0.3076923076923077, 0.9377289377289377, 0.9194139194139194, 0.22344322344322345, 0.9267399267399268, 0.9340659340659341, 0.9413919413919414, 0.9413919413919414, 0.9340659340659341, 0.9230769230769231, 0.20146520146520147, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.18315018315018314, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.19413919413919414, 0.2857142857142857, 0.304029304029304, 0.3333333333333333, 0.3443223443223443, 0.3882783882783883, 0.43956043956043955, 0.4652014652014652, 0.4835164835164835, 0.5238095238095238, 0.6666666666666666, 0.8827838827838828, 0.9120879120879121, 0.9413919413919414, 0.9487179487179487, 0.9487179487179487, 0.9304029304029304, 0.8974358974358975, 0.8608058608058609, 0.6923076923076923, 0.706959706959707, 0.7216117216117216, 0.717948717948718, 0.608058608058608, 0.608058608058608, 0.6117216117216118, 0.6117216117216118, 0.6227106227106227, 0.6336996336996337, 0.63003663003663, 0.6227106227106227, 0.9487179487179487, 0.945054945054945, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6263736263736264, 0.63003663003663, 0.6336996336996337, 0.6336996336996337, 0.6336996336996337, 0.6336996336996337, 0.6373626373626373, 0.673992673992674], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AhpC-TSA_2.gap.json b/pfam_gap_rates/AhpC-TSA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bdf2d086add701ffe4ad23d5e7efaf8dc0f51a72
--- /dev/null
+++ b/pfam_gap_rates/AhpC-TSA_2.gap.json
@@ -0,0 +1 @@
+{"family": "AhpC-TSA_2", "n_seqs": 490, "length": 230, "gap_rates": [0.8714285714285714, 0.5489795918367347, 0.5306122448979592, 0.48367346938775513, 0.45102040816326533, 0.39387755102040817, 0.336734693877551, 0.31020408163265306, 0.2714285714285714, 0.28775510204081634, 0.2653061224489796, 0.22040816326530613, 0.1836734693877551, 0.10204081632653061, 0.06326530612244897, 0.05918367346938776, 0.05510204081632653, 0.053061224489795916, 0.03877551020408163, 0.03877551020408163, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.5693877551020409, 0.03469387755102041, 0.5040816326530613, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.02857142857142857, 0.024489795918367346, 0.16122448979591836, 0.08163265306122448, 0.9204081632653062, 0.8857142857142857, 0.02040816326530612, 0.018367346938775512, 0.0163265306122449, 0.014285714285714285, 0.012244897959183673, 0.01020408163265306, 0.7448979591836735, 0.01020408163265306, 0.01020408163265306, 0.00816326530612245, 0.00816326530612245, 0.01020408163265306, 0.00816326530612245, 0.00816326530612245, 0.006122448979591836, 0.00816326530612245, 0.006122448979591836, 0.006122448979591836, 0.004081632653061225, 0.004081632653061225, 0.004081632653061225, 0.00816326530612245, 0.00816326530612245, 0.889795918367347, 0.8938775510204081, 0.9020408163265307, 0.9102040816326531, 0.926530612244898, 0.9448979591836735, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9489795918367347, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9448979591836735, 0.936734693877551, 0.9204081632653062, 0.9040816326530612, 0.8979591836734694, 0.8918367346938776, 0.8795918367346939, 0.012244897959183673, 0.044897959183673466, 0.044897959183673466, 0.05102040816326531, 0.03877551020408163, 0.03877551020408163, 0.02857142857142857, 0.9204081632653062, 0.030612244897959183, 0.9326530612244898, 0.024489795918367346, 0.036734693877551024, 0.05102040816326531, 0.9020408163265307, 0.9428571428571428, 0.9346938775510204, 0.7795918367346939, 0.04897959183673469, 0.04693877551020408, 0.05102040816326531, 0.04693877551020408, 0.753061224489796, 0.8448979591836735, 0.8775510204081632, 0.7816326530612245, 0.6836734693877551, 0.05510204081632653, 0.07551020408163266, 0.9285714285714286, 0.9326530612244898, 0.8816326530612245, 0.1326530612244898, 0.08979591836734693, 0.0653061224489796, 0.04285714285714286, 0.0326530612244898, 0.0326530612244898, 0.036734693877551024, 0.03877551020408163, 0.09387755102040816, 0.8448979591836735, 0.9489795918367347, 0.7142857142857143, 0.15306122448979592, 0.09387755102040816, 0.06938775510204082, 0.05510204081632653, 0.0673469387755102, 0.030612244897959183, 0.8, 0.8224489795918367, 0.8469387755102041, 0.863265306122449, 0.8734693877551021, 0.8816326530612245, 0.889795918367347, 0.8959183673469387, 0.9, 0.9040816326530612, 0.9061224489795918, 0.9061224489795918, 0.9061224489795918, 0.9081632653061225, 0.9081632653061225, 0.9102040816326531, 0.9142857142857143, 0.9163265306122449, 0.9183673469387755, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9224489795918367, 0.9224489795918367, 0.9244897959183673, 0.926530612244898, 0.926530612244898, 0.9285714285714286, 0.9306122448979591, 0.9306122448979591, 0.9326530612244898, 0.9346938775510204, 0.9326530612244898, 0.9306122448979591, 0.9285714285714286, 0.926530612244898, 0.926530612244898, 0.926530612244898, 0.9244897959183673, 0.9224489795918367, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9163265306122449, 0.9142857142857143, 0.9122448979591836, 0.9102040816326531, 0.9081632653061225, 0.9081632653061225, 0.9061224489795918, 0.9061224489795918, 0.9061224489795918, 0.9020408163265307, 0.8959183673469387, 0.8938775510204081, 0.8877551020408163, 0.8775510204081632, 0.8693877551020408, 0.8489795918367347, 0.8346938775510204, 0.8142857142857143, 0.7204081632653061, 0.022448979591836733, 0.024489795918367346, 0.030612244897959183, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.026530612244897958, 0.026530612244897958, 0.02857142857142857, 0.02857142857142857, 0.17142857142857143, 0.07346938775510205, 0.18775510204081633, 0.1346938775510204, 0.7653061224489796, 0.14489795918367346, 0.14081632653061224, 0.1469387755102041, 0.15918367346938775, 0.1816326530612245, 0.21020408163265306, 0.22040816326530613, 0.2673469387755102, 0.37142857142857144, 0.6775510204081633], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ald_Xan_dh_C.gap.json b/pfam_gap_rates/Ald_Xan_dh_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17d28acc31980662b687f9c839a020ec2bb61c1c
--- /dev/null
+++ b/pfam_gap_rates/Ald_Xan_dh_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ald_Xan_dh_C", "n_seqs": 2902, "length": 125, "gap_rates": [0.3173673328738801, 0.08132322536181943, 0.07133011716057891, 0.055823569951757405, 0.04962095106822881, 0.04410751206064783, 0.042384562370778776, 0.04169538249483115, 0.04066161268090972, 0.03997243280496209, 0.0368711233631978, 0.03445899379738112, 0.03239145416953825, 0.028945554789800137, 0.028256374913852515, 0.025155065472088216, 0.7060647829083391, 0.02308752584424535, 0.021709166092350102, 0.02101998621640248, 0.02067539627842867, 0.02067539627842867, 0.02101998621640248, 0.02067539627842867, 0.02033080634045486, 0.019986216402481046, 0.02033080634045486, 0.018607856650585803, 0.01826326671261199, 0.01826326671261199, 0.018952446588559616, 0.02308752584424535, 0.021709166092350102, 0.01826326671261199, 0.018607856650585803, 0.018952446588559616, 0.018952446588559616, 0.02101998621640248, 0.02653342522398346, 0.027911784975878703, 0.02446588559614059, 0.02033080634045486, 0.021364576154376293, 0.027567195037904894, 0.026878015161957272, 0.021709166092350102, 0.022742935906271536, 0.01722949689869056, 0.019641626464507237, 0.025499655410062026, 0.03239145416953825, 0.0368711233631978, 0.03893866299104066, 0.042384562370778776, 0.04410751206064783, 0.04514128187456926, 0.04686423156443832, 0.0709855272226051, 0.07167470709855273, 0.06719503790489317, 0.06064782908339077, 0.23983459682977257, 0.6574776016540317, 0.7915230875258442, 0.8807718814610613, 0.9152308752584425, 0.8421778084079945, 0.7291523087525844, 0.5827015851137147, 0.26361130254996556, 0.26636802205375604, 0.2064093728463129, 0.19848380427291523, 0.1702274293590627, 0.20847691247415576, 0.2656788421778084, 0.8177119228118539, 0.8680220537560304, 0.9276361130254996, 0.945210199862164, 0.8893866299104066, 0.8270158511371468, 0.770158511371468, 0.39352170916609236, 0.27015851137146796, 0.057891109579600274, 0.05478980013783598, 0.052033080634045485, 0.052377670572019294, 0.04996554100620262, 0.04893177119228118, 0.04789800137835975, 0.04686423156443832, 0.046519641626464506, 0.046519641626464506, 0.04686423156443832, 0.04686423156443832, 0.04686423156443832, 0.04720882150241213, 0.04686423156443832, 0.04686423156443832, 0.04686423156443832, 0.04686423156443832, 0.048242591316333565, 0.04962095106822881, 0.05134390075809786, 0.052377670572019294, 0.05306685044796692, 0.05478980013783598, 0.05478980013783598, 0.055478980013783596, 0.055478980013783596, 0.05685733976567884, 0.057546519641626465, 0.057546519641626465, 0.05892487939352171, 0.06202618883528601, 0.06547208821502412, 0.0740868366643694, 0.07753273604410751, 0.08924879393521709, 0.09476223294279806, 0.12508614748449345, 0.24328049620951067, 0.5654720882150241], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alg14.gap.json b/pfam_gap_rates/Alg14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d3712d5d72ba6f17b796835421c91f5213e5580
--- /dev/null
+++ b/pfam_gap_rates/Alg14.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Alph_Pro_TM.gap.json b/pfam_gap_rates/Alph_Pro_TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2398ab31d1e35aab13a0ae2ba48dd8d1854a2364
--- /dev/null
+++ b/pfam_gap_rates/Alph_Pro_TM.gap.json
@@ -0,0 +1 @@
+{"family": "Alph_Pro_TM", "n_seqs": 174, "length": 241, "gap_rates": [0.8908045977011494, 0.06321839080459771, 0.05172413793103448, 0.034482758620689655, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.21839080459770116, 0.22413793103448276, 0.22988505747126436, 0.21839080459770116, 0.29310344827586204, 0.3850574712643678, 0.9367816091954023, 0.6609195402298851, 0.3103448275862069, 0.27586206896551724, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.011494252873563218, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.022988505747126436, 0.022988505747126436, 0.011494252873563218, 0.06321839080459771, 0.011494252873563218, 0.005747126436781609, 0.0, 0.0, 0.0, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.017241379310344827, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005747126436781609, 0.7988505747126436, 0.896551724137931, 0.9080459770114943, 0.9195402298850575, 0.9195402298850575, 0.9080459770114943, 0.867816091954023, 0.7241379310344828, 0.6149425287356322, 0.16666666666666666, 0.13793103448275862, 0.08045977011494253, 0.05747126436781609, 0.05172413793103448, 0.04597701149425287, 0.028735632183908046, 0.022988505747126436, 0.022988505747126436, 0.005747126436781609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011494252873563218, 0.005747126436781609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.040229885057471264, 0.005747126436781609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.017241379310344827, 0.017241379310344827, 0.10919540229885058, 0.40804597701149425], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AmiS_UreI.gap.json b/pfam_gap_rates/AmiS_UreI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0ca712c23bfee43d10b082748b0c2177d6d095e
--- /dev/null
+++ b/pfam_gap_rates/AmiS_UreI.gap.json
@@ -0,0 +1 @@
+{"family": "AmiS_UreI", "n_seqs": 100, "length": 182, "gap_rates": [0.32, 0.11, 0.1, 0.08, 0.03, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.89, 0.94, 0.89, 0.89, 0.38, 0.33, 0.3, 0.29, 0.25, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.93, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.04, 0.07, 0.23, 0.15, 0.56, 0.82, 0.83, 0.95, 0.95, 0.95, 0.95, 0.84, 0.83, 0.59, 0.53, 0.02, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.02, 0.01, 0.75, 0.16, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.03, 0.03, 0.03, 0.03, 0.03, 0.04, 0.05, 0.07, 0.16, 0.94], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Amidase_2.gap.json b/pfam_gap_rates/Amidase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eadd96881fb087794cd04af5fa7d08dc5d9471f1
--- /dev/null
+++ b/pfam_gap_rates/Amidase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Amidase_2", "n_seqs": 2378, "length": 225, "gap_rates": [0.9495374264087468, 0.5962994112699748, 0.34188393608074014, 0.1934398654331371, 0.13078216989066443, 0.09125315391084945, 0.07611438183347351, 0.0727502102607233, 0.0710681244743482, 0.07022708158116064, 0.9335576114381834, 0.9335576114381834, 0.9339781328847772, 0.9339781328847772, 0.9343986543313709, 0.9343986543313709, 0.9343986543313709, 0.9339781328847772, 0.9339781328847772, 0.9335576114381834, 0.9335576114381834, 0.0710681244743482, 0.08830950378469302, 0.08999158957106812, 0.09167367535744322, 0.13036164844407064, 0.25399495374264086, 0.08915054667788057, 0.12994112699747687, 0.16694701429772918, 0.11774600504625736, 0.10681244743481917, 0.16442388561816654, 0.15517241379310345, 0.9386038687973086, 0.4339781328847771, 0.1947014297729184, 0.2590412111017662, 0.27586206896551724, 0.10891505466778806, 0.3982338099243061, 0.47771236333052985, 0.6379310344827587, 0.7825904121110177, 0.8923465096719932, 0.93986543313709, 0.8427249789739276, 0.6934398654331371, 0.5786375105130361, 0.4314550042052145, 0.3662741799831791, 0.16274179983179143, 0.4941126997476871, 0.2783851976450799, 0.5239697224558453, 0.6126997476871321, 0.7249789739276703, 0.932296047098402, 0.851555929352397, 0.6518082422203533, 0.5672834314550042, 0.4941126997476871, 0.06644238856181665, 0.01892346509671993, 0.9251471825063078, 0.8763666947014298, 0.015138772077375946, 0.013877207737594618, 0.013877207737594618, 0.01345668629100084, 0.012195121951219513, 0.017661900756938603, 0.012195121951219513, 0.012615643397813289, 0.012615643397813289, 0.11942809083263246, 0.011354079058031959, 0.009251471825063078, 0.009251471825063078, 0.21362489486963834, 0.2039529015979815, 0.2144659377628259, 0.2127838519764508, 0.20185029436501262, 0.0159798149705635, 0.017241379310344827, 0.014297729184188394, 0.008830950378469302, 0.8132884777123633, 0.8267451640033642, 0.8906644238856182, 0.9167367535744323, 0.9192598822539949, 0.8957106812447435, 0.8284272497897393, 0.8174936921783011, 0.8090832632464255, 0.008830950378469302, 0.01934398654331371, 0.034482758620689655, 0.4074852817493692, 0.5588730025231287, 0.6076534903280068, 0.6358284272497897, 0.8973927670311186, 0.9188393608074011, 0.9348191757779647, 0.945332211942809, 0.9486963835155593, 0.9461732548359967, 0.9440706476030277, 0.9306139613120269, 0.9095878889823381, 0.8826745164003365, 0.6173254835996635, 0.5773759461732548, 0.5567703952901598, 0.37132043734230447, 0.012195121951219513, 0.00672834314550042, 0.007148864592094197, 0.00798990748528175, 0.0054667788057190915, 0.0054667788057190915, 0.005887300252312868, 0.006307821698906644, 0.006307821698906644, 0.005887300252312868, 0.005887300252312868, 0.006307821698906644, 0.00672834314550042, 0.007569386038687973, 0.01892346509671993, 0.5962994112699748, 0.7565180824222035, 0.8174936921783011, 0.872161480235492, 0.9226240538267452, 0.9343986543313709, 0.9423885618166526, 0.9491169049621531, 0.9356602186711522, 0.9306139613120269, 0.896551724137931, 0.8587047939444912, 0.8086627417998318, 0.7094196804037006, 0.2956265769554247, 0.050462573591253154, 0.026492851135407905, 0.016400336417157275, 0.011774600504625737, 0.029857022708158116, 0.009671993271656855, 0.009671993271656855, 0.010513036164844407, 0.010933557611438183, 0.010092514718250631, 0.010513036164844407, 0.010933557611438183, 0.010513036164844407, 0.011774600504625737, 0.011354079058031959, 0.012615643397813289, 0.013036164844407064, 0.01934398654331371, 0.018502943650126155, 0.027754415475189236, 0.02943650126156434, 0.02396972245584525, 0.02396972245584525, 0.8931875525651808, 0.058452481076534904, 0.07064760302775441, 0.07653490328006729, 0.32842724978973925, 0.21362489486963834, 0.14802354920100924, 0.20479394449116906, 0.8216989066442388, 0.8511354079058032, 0.8599663582842725, 0.8860386879730866, 0.8944491169049622, 0.9179983179142136, 0.9222035323801514, 0.9293523969722456, 0.9390243902439024, 0.9461732548359967, 0.9491169049621531, 0.9444911690496215, 0.936080740117746, 0.9255677039529016, 0.9217830109335576, 0.9095878889823381, 0.8923465096719932, 0.864592094196804, 0.8544995794785534, 0.843986543313709, 0.7417998317914214, 0.038267451640033645, 0.0407905803195963, 0.04205214465937763, 0.04415475189234651, 0.9381833473507148, 0.9461732548359967, 0.9386038687973086, 0.936080740117746, 0.05424726661059714, 0.1312026913372582, 0.095878889823381, 0.46551724137931033, 0.8679562657695542, 0.9243061396131202, 0.9352396972245585, 0.8986543313708999, 0.5382674516400336, 0.124053826745164, 0.10933557611438183, 0.11269974768713205, 0.11396131202691337, 0.11480235492010092, 0.12026913372582002, 0.28847771236333053, 0.8103448275862069], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Amidase_6.gap.json b/pfam_gap_rates/Amidase_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c2a4a094644f6cf1fee433cecb48b2c21b1c5a7
--- /dev/null
+++ b/pfam_gap_rates/Amidase_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Aminotran_MocR.gap.json b/pfam_gap_rates/Aminotran_MocR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e84ebc439d52d74052f9a5166c520a89d27f324
--- /dev/null
+++ b/pfam_gap_rates/Aminotran_MocR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ammonium_transp.gap.json b/pfam_gap_rates/Ammonium_transp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee79005549a03dfbb8a3ad98593037d901e7d298
--- /dev/null
+++ b/pfam_gap_rates/Ammonium_transp.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Anillin.gap.json b/pfam_gap_rates/Anillin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1cce902d5f2c43c4c433b94ba72883a8ec6cff3c
--- /dev/null
+++ b/pfam_gap_rates/Anillin.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Anp1.gap.json b/pfam_gap_rates/Anp1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a7822c3deded4e829880f11142d2f25d68aaa73
--- /dev/null
+++ b/pfam_gap_rates/Anp1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Anth_synt_I_N.gap.json b/pfam_gap_rates/Anth_synt_I_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8eb09570a8509d004bfaa4b449004350ebd6e94
--- /dev/null
+++ b/pfam_gap_rates/Anth_synt_I_N.gap.json
@@ -0,0 +1 @@
+{"family": "Anth_synt_I_N", "n_seqs": 2442, "length": 205, "gap_rates": [0.5397215397215397, 0.48075348075348073, 0.3857493857493858, 0.32227682227682225, 0.294021294021294, 0.2747747747747748, 0.24037674037674037, 0.21294021294021295, 0.18796068796068796, 0.1769041769041769, 0.16871416871416872, 0.15724815724815724, 0.14455364455364456, 0.12735462735462735, 0.16093366093366093, 0.11547911547911548, 0.8763308763308764, 0.9332514332514332, 0.8955773955773956, 0.4963144963144963, 0.13677313677313677, 0.06674856674856675, 0.06347256347256347, 0.05978705978705979, 0.05978705978705979, 0.059377559377559376, 0.05814905814905815, 0.05855855855855856, 0.08558558558558559, 0.25634725634725636, 0.20802620802620803, 0.10810810810810811, 0.10155610155610155, 0.049959049959049956, 0.8697788697788698, 0.9463554463554463, 0.814086814086814, 0.04586404586404586, 0.04381654381654382, 0.042997542997543, 0.042997542997543, 0.042997542997543, 0.04176904176904177, 0.04135954135954136, 0.04095004095004095, 0.04013104013104013, 0.039721539721539724, 0.10155610155610155, 0.095004095004095, 0.09254709254709255, 0.1036036036036036, 0.09705159705159705, 0.9348894348894349, 0.9492219492219492, 0.9123669123669124, 0.10401310401310401, 0.09090909090909091, 0.08517608517608517, 0.07493857493857493, 0.0733005733005733, 0.0687960687960688, 0.06961506961506962, 0.07534807534807535, 0.07125307125307126, 0.0642915642915643, 0.7018837018837019, 0.7874692874692875, 0.8484848484848485, 0.8722358722358723, 0.8877968877968878, 0.8992628992628993, 0.907043407043407, 0.914004914004914, 0.920966420966421, 0.9217854217854218, 0.9254709254709255, 0.9266994266994267, 0.9291564291564292, 0.9312039312039312, 0.9328419328419328, 0.9336609336609336, 0.9361179361179361, 0.9377559377559378, 0.9414414414414415, 0.9459459459459459, 0.943079443079443, 0.9402129402129402, 0.9377559377559378, 0.9348894348894349, 0.9336609336609336, 0.9320229320229321, 0.9295659295659295, 0.9291564291564292, 0.9258804258804259, 0.9242424242424242, 0.9213759213759214, 0.9156429156429157, 0.9115479115479116, 0.9021294021294022, 0.8914823914823915, 0.8787878787878788, 0.864045864045864, 0.8079443079443079, 0.7444717444717445, 0.6257166257166257, 0.3067158067158067, 0.24815724815724816, 0.19696969696969696, 0.1597051597051597, 0.11957411957411958, 0.09991809991809991, 0.09787059787059788, 0.09991809991809991, 0.10032760032760032, 0.039721539721539724, 0.7199017199017199, 0.9152334152334153, 0.938984438984439, 0.8284193284193284, 0.5962325962325963, 0.029484029484029485, 0.027436527436527438, 0.027846027846027847, 0.02702702702702703, 0.02416052416052416, 0.02457002457002457, 0.02416052416052416, 0.02252252252252252, 0.02293202293202293, 0.02293202293202293, 0.02416052416052416, 0.02416052416052416, 0.025389025389025387, 0.36486486486486486, 0.1334971334971335, 0.5659295659295659, 0.3316953316953317, 0.35872235872235875, 0.24201474201474202, 0.920966420966421, 0.9406224406224406, 0.9013104013104013, 0.11588861588861589, 0.10196560196560196, 0.08271908271908272, 0.0773955773955774, 0.07043407043407043, 0.9234234234234234, 0.03235053235053235, 0.03480753480753481, 0.027846027846027847, 0.02702702702702703, 0.014742014742014743, 0.014742014742014743, 0.012285012285012284, 0.010647010647010647, 0.0085995085995086, 0.009009009009009009, 0.009009009009009009, 0.009418509418509418, 0.009418509418509418, 0.018837018837018837, 0.01760851760851761, 0.009828009828009828, 0.010647010647010647, 0.02702702702702703, 0.6564291564291564, 0.03931203931203931, 0.051597051597051594, 0.04135954135954136, 0.9226044226044227, 0.8636363636363636, 0.1339066339066339, 0.11916461916461916, 0.0819000819000819, 0.022113022113022112, 0.01638001638001638, 0.020065520065520065, 0.013923013923013924, 0.014332514332514333, 0.8296478296478297, 0.013923013923013924, 0.01760851760851761, 0.01597051597051597, 0.014742014742014743, 0.013923013923013924, 0.013513513513513514, 0.013923013923013924, 0.013923013923013924, 0.014332514332514333, 0.014742014742014743, 0.015561015561015561, 0.01597051597051597, 0.0171990171990172, 0.02252252252252252, 0.02457002457002457, 0.02620802620802621, 0.029074529074529076, 0.0343980343980344, 0.046273546273546275, 0.05855855855855856, 0.08476658476658476, 0.1298116298116298, 0.28624078624078625, 0.5786240786240786], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Anticodon_1.gap.json b/pfam_gap_rates/Anticodon_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e80392e42a2b4a1bf3d328d04d49bd172d7109b1
--- /dev/null
+++ b/pfam_gap_rates/Anticodon_1.gap.json
@@ -0,0 +1 @@
+{"family": "Anticodon_1", "n_seqs": 5000, "length": 177, "gap_rates": [0.4234, 0.3276, 0.2718, 0.2186, 0.1758, 0.138, 0.1068, 0.0708, 0.0552, 0.0468, 0.0392, 0.0338, 0.0276, 0.0226, 0.0206, 0.0192, 0.0186, 0.018, 0.017, 0.0168, 0.0164, 0.933, 0.0162, 0.0162, 0.0158, 0.0156, 0.0154, 0.0154, 0.0148, 0.0144, 0.0142, 0.0142, 0.0138, 0.0136, 0.0928, 0.349, 0.1184, 0.0628, 0.0752, 0.0438, 0.24, 0.155, 0.1422, 0.129, 0.1204, 0.1002, 0.1034, 0.0922, 0.0834, 0.0868, 0.0936, 0.1306, 0.1964, 0.1984, 0.2424, 0.2528, 0.279, 0.3846, 0.3474, 0.3358, 0.9098, 0.668, 0.4358, 0.3442, 0.504, 0.2892, 0.2562, 0.949, 0.0606, 0.05, 0.039, 0.0204, 0.0158, 0.0138, 0.011, 0.0092, 0.0094, 0.009, 0.009, 0.0088, 0.0086, 0.0084, 0.0086, 0.0086, 0.008, 0.0076, 0.0088, 0.0094, 0.01, 0.0108, 0.0124, 0.0144, 0.0164, 0.0228, 0.5138, 0.5604, 0.6854, 0.8192, 0.9032, 0.9482, 0.9334, 0.8588, 0.7574, 0.619, 0.5836, 0.7564, 0.3302, 0.2674, 0.248, 0.8594, 0.1542, 0.1282, 0.0968, 0.9488, 0.9276, 0.0924, 0.095, 0.0932, 0.1172, 0.1108, 0.104, 0.1034, 0.1022, 0.1048, 0.1728, 0.451, 0.1912, 0.1404, 0.2718, 0.2342, 0.2038, 0.8324, 0.9202, 0.6298, 0.2072, 0.3174, 0.351, 0.3756, 0.901, 0.7874, 0.846, 0.926, 0.9462, 0.8996, 0.8242, 0.3092, 0.264, 0.1808, 0.1754, 0.1678, 0.1672, 0.3994, 0.3948, 0.3936, 0.1664, 0.1676, 0.171, 0.172, 0.173, 0.1748, 0.1778, 0.1826, 0.188, 0.1992, 0.2034, 0.211, 0.2194, 0.2264, 0.2354, 0.2528, 0.2752, 0.312, 0.352, 0.4784, 0.5922, 0.7128, 0.842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ApbA.gap.json b/pfam_gap_rates/ApbA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..172d90a230eaa9a9a8309ab5c763a1791400ac4f
--- /dev/null
+++ b/pfam_gap_rates/ApbA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Arb1.gap.json b/pfam_gap_rates/Arb1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3527c41763d23e6f0b747135edfcf490a9ac685
--- /dev/null
+++ b/pfam_gap_rates/Arb1.gap.json
@@ -0,0 +1 @@
+{"family": "Arb1", "n_seqs": 100, "length": 454, "gap_rates": [0.73, 0.59, 0.48, 0.43, 0.38, 0.37, 0.37, 0.56, 0.56, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.35, 0.35, 0.34, 0.34, 0.32, 0.32, 0.32, 0.31, 0.3, 0.3, 0.72, 0.31, 0.28, 0.26, 0.26, 0.26, 0.41, 0.4, 0.4, 0.38, 0.37, 0.37, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.27, 0.26, 0.26, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.26, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.6, 0.85, 0.93, 0.95, 0.93, 0.83, 0.29, 0.28, 0.26, 0.25, 0.26, 0.26, 0.25, 0.26, 0.27, 0.26, 0.26, 0.24, 0.24, 0.24, 0.25, 0.24, 0.24, 0.24, 0.25, 0.27, 0.25, 0.25, 0.26, 0.26, 0.25, 0.25, 0.27, 0.27, 0.58, 0.94, 0.9, 0.61, 0.57, 0.48, 0.47, 0.46, 0.44, 0.41, 0.36, 0.34, 0.72, 0.94, 0.93, 0.54, 0.2, 0.2, 0.2, 0.2, 0.18, 0.19, 0.19, 0.18, 0.16, 0.11, 0.11, 0.11, 0.11, 0.11, 0.14, 0.17, 0.15, 0.13, 0.12, 0.12, 0.11, 0.9, 0.11, 0.11, 0.11, 0.11, 0.55, 0.1, 0.1, 0.1, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.32, 0.34, 0.36, 0.86, 0.93, 0.95, 0.95, 0.92, 0.62, 0.37, 0.43, 0.35, 0.31, 0.29, 0.27, 0.27, 0.92, 0.93, 0.84, 0.28, 0.27, 0.3, 0.35, 0.36, 0.38, 0.39, 0.75, 0.79, 0.82, 0.92, 0.94, 0.95, 0.94, 0.93, 0.87, 0.79, 0.79, 0.72, 0.26, 0.23, 0.23, 0.22, 0.22, 0.22, 0.22, 0.23, 0.23, 0.23, 0.27, 0.26, 0.26, 0.27, 0.27, 0.27, 0.27, 0.28, 0.3, 0.3, 0.31, 0.32, 0.43, 0.43, 0.63, 0.62, 0.59, 0.62, 0.61, 0.95, 0.92, 0.52, 0.44, 0.38, 0.36, 0.34, 0.32, 0.32, 0.32, 0.32, 0.31, 0.31, 0.31, 0.31, 0.31, 0.31, 0.31, 0.34, 0.31, 0.31, 0.31, 0.31, 0.31, 0.31, 0.31, 0.33, 0.33, 0.34, 0.33, 0.33, 0.33, 0.33, 0.34, 0.36, 0.35, 0.35, 0.36, 0.37, 0.37, 0.38, 0.38, 0.38, 0.52, 0.54, 0.57, 0.53, 0.5, 0.9, 0.95, 0.92, 0.74, 0.37, 0.37, 0.35, 0.34, 0.33, 0.33, 0.33, 0.33, 0.33, 0.33, 0.33, 0.33, 0.68, 0.68, 0.68, 0.68, 0.73, 0.72, 0.36, 0.36, 0.35, 0.88, 0.33, 0.34, 0.34, 0.34, 0.34, 0.33, 0.33, 0.33, 0.4, 0.43, 0.41, 0.5, 0.6, 0.53, 0.66, 0.68, 0.73, 0.79, 0.85, 0.95, 0.84, 0.77, 0.71, 0.66, 0.66, 0.31, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.31, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.32, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.3, 0.34, 0.35, 0.36, 0.36, 0.37, 0.4, 0.4, 0.42, 0.42, 0.44, 0.44, 0.48, 0.49], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ArfGap.gap.json b/pfam_gap_rates/ArfGap.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1552628092f13c98cc776aaa576b2940e7c729c
--- /dev/null
+++ b/pfam_gap_rates/ArfGap.gap.json
@@ -0,0 +1 @@
+{"family": "ArfGap", "n_seqs": 2651, "length": 128, "gap_rates": [0.6914371935118823, 0.3689173896642776, 0.24141833270463975, 0.2033195020746888, 0.17880045265937383, 0.16069407770652583, 0.14711429649188984, 0.13202565069784986, 0.9253112033195021, 0.11241041116559788, 0.1014711429649189, 0.09354960392304791, 0.08713692946058091, 0.08185590343266692, 0.07317993210109393, 0.07091663523198793, 0.06978498679743493, 0.06978498679743493, 0.06827612221803094, 0.06978498679743493, 0.06676725763862694, 0.05582798943794794, 0.04979253112033195, 0.044134288947566956, 0.9415314975480951, 0.04262542436816296, 0.041870992078460956, 0.04111655978875896, 0.03847604677480196, 0.04111655978875896, 0.036589966050546964, 0.036212749905695965, 0.03545831761599397, 0.034326669181440964, 0.034326669181440964, 0.033572236891738966, 0.033572236891738966, 0.03055450773293097, 0.028668427008675973, 0.029045643153526972, 0.029045643153526972, 0.027536778574122973, 0.02791399471897397, 0.029045643153526972, 0.028668427008675973, 0.026782346284420975, 0.02187853640135798, 0.02187853640135798, 0.14070162202942285, 0.0984534138061109, 0.08902301018483591, 0.015088645794039984, 0.014711429649188985, 0.013956997359486986, 0.015843078083741986, 0.01848359109769898, 0.01961523953225198, 0.021124104111655977, 0.01999245567710298, 0.02074688796680498, 0.022255752546208978, 0.922670690305545, 0.8860807242549981, 0.024141833270463976, 0.023764617125612977, 0.024519049415314974, 0.024896265560165973, 0.026027913994718974, 0.026405130139569973, 0.026782346284420975, 0.031308940022632965, 0.033572236891738966, 0.033949453036589965, 0.03847604677480196, 0.036212749905695965, 0.9351188230856281, 0.03470388532629196, 0.03470388532629196, 0.034326669181440964, 0.03696718219539796, 0.036212749905695965, 0.03734439834024896, 0.03809883062995096, 0.03923047906450396, 0.03960769520935496, 0.03998491135420596, 0.04300264051301396, 0.044134288947566956, 0.7563183704262543, 0.8691059977367032, 0.9158807996982271, 0.9290833647680121, 0.9222934741606941, 0.8989060731799321, 0.8249717087891362, 0.5352697095435685, 0.16069407770652583, 0.38589211618257263, 0.3236514522821577, 0.2995096190116937, 0.3021501320256507, 0.2206714447378348, 0.15918521312712183, 0.13051678611844586, 0.13956997359486986, 0.12184081478687288, 0.10826103357223689, 0.11090154658619389, 0.11203319502074689, 0.11278762731044889, 0.11467370803470389, 0.12070916635231987, 0.12221803093172388, 0.13127121840814787, 0.13240286684270086, 0.13956997359486986, 0.14447378347793285, 0.14975480950584685, 0.15729913240286683, 0.16484345529988684, 0.1840814786872878, 0.2018106374952848, 0.21991701244813278, 0.26254243681629574, 0.30592229347416067, 0.38476046774801964, 0.5926065635609205, 0.8442097321765372], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arfaptin.gap.json b/pfam_gap_rates/Arfaptin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e2c8861eea06c2488fad0d1b0721d593cdb2673
--- /dev/null
+++ b/pfam_gap_rates/Arfaptin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ArgK.gap.json b/pfam_gap_rates/ArgK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d99eb4a67f450d8ae3103e733d496906a302168
--- /dev/null
+++ b/pfam_gap_rates/ArgK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AsnA.gap.json b/pfam_gap_rates/AsnA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ede3b104e7195d0120c3eb0043405ef193c24eb
--- /dev/null
+++ b/pfam_gap_rates/AsnA.gap.json
@@ -0,0 +1 @@
+{"family": "AsnA", "n_seqs": 482, "length": 247, "gap_rates": [0.508298755186722, 0.23443983402489627, 0.13692946058091288, 0.13485477178423236, 0.13278008298755187, 0.13278008298755187, 0.13070539419087138, 0.13070539419087138, 0.13070539419087138, 0.13070539419087138, 0.12863070539419086, 0.12448132780082988, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.12240663900414937, 0.07676348547717843, 0.07468879668049792, 0.07053941908713693, 0.07053941908713693, 0.07468879668049792, 0.07468879668049792, 0.07261410788381743, 0.07261410788381743, 0.07261410788381743, 0.15560165975103735, 0.07053941908713693, 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\ No newline at end of file
diff --git a/pfam_gap_rates/AtpR.gap.json b/pfam_gap_rates/AtpR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5312d5e9266848c0cd1a5b5a1296c633de5436b4
--- /dev/null
+++ b/pfam_gap_rates/AtpR.gap.json
@@ -0,0 +1 @@
+{"family": "AtpR", "n_seqs": 129, "length": 88, "gap_rates": [0.9147286821705426, 0.5116279069767442, 0.20155038759689922, 0.07751937984496124, 0.03875968992248062, 0.031007751937984496, 0.023255813953488372, 0.023255813953488372, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.007751937984496124, 0.0, 0.0, 0.06201550387596899, 0.015503875968992248, 0.3488372093023256, 0.3178294573643411, 0.31007751937984496, 0.20155038759689922, 0.12403100775193798, 0.06976744186046512, 0.05426356589147287, 0.37209302325581395, 0.15503875968992248, 0.05426356589147287, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9224806201550387, 0.937984496124031, 0.8992248062015504, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015503875968992248, 0.03875968992248062, 0.10852713178294573, 0.2248062015503876, 0.4883720930232558, 0.6744186046511628, 0.8992248062015504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Autoind_synth.gap.json b/pfam_gap_rates/Autoind_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b578a657d1d882224d253bed04895d899b5d6ae7
--- /dev/null
+++ b/pfam_gap_rates/Autoind_synth.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Autophagy_C.gap.json b/pfam_gap_rates/Autophagy_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..132c2bd95dcb989d635c32bfd17fa744abb24261
--- /dev/null
+++ b/pfam_gap_rates/Autophagy_C.gap.json
@@ -0,0 +1 @@
+{"family": "Autophagy_C", "n_seqs": 312, "length": 25, "gap_rates": [0.10897435897435898, 0.038461538461538464, 0.019230769230769232, 0.003205128205128205, 0.003205128205128205, 0.00641025641025641, 0.009615384615384616, 0.009615384615384616, 0.00641025641025641, 0.00641025641025641, 0.0, 0.0, 0.0, 0.00641025641025641, 0.00641025641025641, 0.009615384615384616, 0.01282051282051282, 0.009615384615384616, 0.009615384615384616, 0.01282051282051282, 0.016025641025641024, 0.016025641025641024, 0.019230769230769232, 0.05128205128205128, 0.40705128205128205], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Autophagy_act_C.gap.json b/pfam_gap_rates/Autophagy_act_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c27437eaed7195e7c87511ad5cae07878fa2dab
--- /dev/null
+++ b/pfam_gap_rates/Autophagy_act_C.gap.json
@@ -0,0 +1 @@
+{"family": "Autophagy_act_C", "n_seqs": 533, "length": 84, "gap_rates": [0.07879924953095685, 0.02626641651031895, 0.016885553470919325, 0.013133208255159476, 0.013133208255159476, 0.013133208255159476, 0.013133208255159476, 0.013133208255159476, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.024390243902439025, 0.924953095684803, 0.8949343339587242, 0.0225140712945591, 0.028142589118198873, 0.039399624765478425, 0.020637898686679174, 0.020637898686679174, 0.016885553470919325, 0.016885553470919325, 0.016885553470919325, 0.016885553470919325, 0.013133208255159476, 0.013133208255159476, 0.016885553470919325, 0.0150093808630394, 0.0075046904315197, 0.016885553470919325, 0.020637898686679174, 0.6060037523452158, 0.6416510318949343, 0.6679174484052532, 0.7917448405253283, 0.8236397748592871, 0.8555347091932458, 0.9324577861163227, 0.9380863039399625, 0.9418386491557224, 0.9418386491557224, 0.9362101313320825, 0.8667917448405253, 0.8367729831144465, 0.8067542213883677, 0.6904315196998124, 0.651031894934334, 0.6378986866791745, 0.5440900562851783, 0.020637898686679174, 0.016885553470919325, 0.016885553470919325, 0.2701688555347092, 0.15384615384615385, 0.25328330206378985, 0.18761726078799248, 0.020637898686679174, 0.01876172607879925, 0.01876172607879925, 0.020637898686679174, 0.020637898686679174, 0.02626641651031895, 0.028142589118198873, 0.028142589118198873, 0.8686679174484052, 0.7317073170731707, 0.028142589118198873, 0.02626641651031895, 0.874296435272045, 0.028142589118198873, 0.0300187617260788, 0.0300187617260788, 0.0300187617260788, 0.0300187617260788, 0.0300187617260788, 0.03189493433395872, 0.0300187617260788, 0.03377110694183865, 0.1350844277673546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Auxin_inducible.gap.json b/pfam_gap_rates/Auxin_inducible.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7ca1f4a1b78a8a06245ac59ef4dfb9968e81b52
--- /dev/null
+++ b/pfam_gap_rates/Auxin_inducible.gap.json
@@ -0,0 +1 @@
+{"family": "Auxin_inducible", "n_seqs": 1951, "length": 121, "gap_rates": [0.8805740645822655, 0.7929267042542286, 0.7637109174782163, 0.7442337262942081, 0.7298821117375704, 0.7232188621219887, 0.7232188621219887, 0.717068170169144, 0.7104049205535623, 0.7139928241927217, 0.8031778575089698, 0.8241927216811892, 0.8385443362378268, 0.8323936442849821, 0.8124038954382368, 0.787801127626858, 0.6965658636596617, 0.716555612506407, 0.6945156330087134, 0.6709379805228088, 0.6652998462327012, 0.9364428498206048, 0.6468477703741671, 0.6237826755509995, 0.6207073295745772, 0.45156330087134805, 0.6545361353152229, 0.7329574577139928, 0.8067657611481291, 0.866735007688365, 0.9138903126601743, 0.9420809841107125, 0.929779600205023, 0.8959507944643772, 0.8354689902614044, 0.7749871860584315, 0.690927729369554, 0.6319835981547924, 0.40850845720143514, 0.35520246027678115, 0.752434648898001, 0.9015889287544849, 0.5894413121476166, 0.17631983598154793, 0.13582778062532036, 0.10917478216299334, 0.09226037929267042, 0.0814966683751922, 0.06765761148129165, 0.05996924654023578, 0.6893900563813429, 0.04254228600717581, 0.040492055356227574, 0.037929267042542285, 0.03434136340338288, 0.032803690415171706, 0.030240902101486417, 0.02972834443874936, 0.0292157867760123, 0.9236289082521784, 0.9441312147616607, 0.9215786776012301, 0.02716555612506407, 0.027678113787801127, 0.8769861609431061, 0.9277293695540748, 0.7406458226550487, 0.21834956432598668, 0.02460276781137878, 0.021527421834956432, 0.020502306509482315, 0.019477191184008202, 0.01742696053305997, 0.017939518195797026, 0.018452075858534086, 0.018964633521271142, 0.020502306509482315, 0.018452075858534086, 0.018452075858534086, 0.017939518195797026, 0.016401845207585853, 0.015889287544848796, 0.015889287544848796, 0.015376729882111738, 0.01486417221937468, 0.012813941568426449, 0.01230138390568939, 0.011788826242952332, 0.010251153254741158, 0.008713480266529985, 0.008713480266529985, 0.010763710917478216, 0.011788826242952332, 0.022039979497693492, 0.02460276781137878, 0.025115325474115838, 0.044079958995386984, 0.038954382368016405, 0.93900563813429, 0.6540235776524859, 0.03331624807790876, 0.02716555612506407, 0.025115325474115838, 0.025627883136852898, 0.02460276781137878, 0.025627883136852898, 0.026140440799589954, 0.02665299846232701, 0.028703229113275244, 0.031266017426960536, 0.030240902101486417, 0.03434136340338288, 0.036391594054331115, 0.036391594054331115, 0.04202972834443875, 0.0451050743208611, 0.05176832393644285, 0.0912352639671963, 0.21117375704766786, 0.362890825217837, 0.6729882111737571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BBP2_2.gap.json b/pfam_gap_rates/BBP2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77e71f92c267e7c216b0886b1af92172d097af78
--- /dev/null
+++ b/pfam_gap_rates/BBP2_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BBS2_C.gap.json b/pfam_gap_rates/BBS2_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44fcc856c72e768d4dfc007da4ab4fc64aa2e866
--- /dev/null
+++ b/pfam_gap_rates/BBS2_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BCDHK_Adom3.gap.json b/pfam_gap_rates/BCDHK_Adom3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b44e52353460cea9529a21b5e6087c30ce279d68
--- /dev/null
+++ b/pfam_gap_rates/BCDHK_Adom3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BOP1NT.gap.json b/pfam_gap_rates/BOP1NT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4fa8dec4e9cfe9ee2f7d0b2fe958660a4b2e20c7
--- /dev/null
+++ b/pfam_gap_rates/BOP1NT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BPL_LplA_LipB.gap.json b/pfam_gap_rates/BPL_LplA_LipB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ed2c24d5cf21eb5c8a1cd7d5078f6b5610a277b
--- /dev/null
+++ b/pfam_gap_rates/BPL_LplA_LipB.gap.json
@@ -0,0 +1 @@
+{"family": "BPL_LplA_LipB", "n_seqs": 4629, "length": 157, "gap_rates": [0.9179088356016418, 0.8485634046230287, 0.7945560596241089, 0.723698422985526, 0.6835169583063296, 0.6530568157269389, 0.6446316699071074, 0.6422553467271549, 0.6182760855476345, 0.5992655001080147, 0.592352559948153, 0.55800388852884, 0.6483041693670339, 0.5117736012097646, 0.423201555411536, 0.39727802981205446, 0.37265068049254696, 0.3359256858932815, 0.32879671635342406, 0.2559948152948801, 0.21214085115575718, 0.17692806221646143, 0.13825880319723483, 0.10239792611795204, 0.0807949881183841, 0.06804925469863901, 0.04947072801901058, 0.03629293583927414, 0.031324260099373516, 0.023763231799524734, 0.020090732339598186, 0.01447396845971052, 0.012313674659753726, 0.010369410239792612, 0.010369410239792612, 0.542449773169151, 0.5541153596889177, 0.5528191834089436, 0.542449773169151, 0.009937351479801253, 0.009937351479801253, 0.009505292719809894, 0.009505292719809894, 0.009289263339814214, 0.23352775977532944, 0.06934543097861309, 0.013609850939727802, 0.7470295960250594, 0.009505292719809894, 0.008641175199827177, 0.008641175199827177, 0.008425145819831496, 0.008641175199827177, 0.007993087059840137, 0.008209116439835818, 0.007993087059840137, 0.007993087059840137, 0.10347807301793044, 0.1101749837977965, 0.23892849427522142, 0.6210844674875783, 0.5541153596889177, 0.440699935191186, 0.21106070425577877, 0.26463599049470726, 0.21127673363577446, 0.1248649816375027, 0.09094836897818104, 0.0378051414992439, 0.03866925901922662, 0.033916612659321665, 0.8286887016634262, 0.7347159213653057, 0.02225102613955498, 0.017498379779650033, 0.013609850939727802, 0.01080146899978397, 0.009721322099805573, 0.009937351479801253, 0.008209116439835818, 0.007128969539857421, 0.006696910779866062, 0.006912940159861741, 0.0075610282998487795, 0.008209116439835818, 0.6411751998271765, 0.8585007561028299, 0.927198098941456, 0.8980341326420394, 0.7193778353856124, 0.6727154893065457, 0.9157485418016851, 0.807301793043854, 0.6683949017066321, 0.6068265284078634, 0.8690861957226182, 0.9451285374810974, 0.931302657161374, 0.8327932598833442, 0.5335925685893281, 0.49189889825016203, 0.31345863037373084, 0.09742925037805142, 0.0818751350183625, 0.07020954849859581, 0.015554115359688918, 0.015770144739684598, 0.017498379779650033, 0.02138690861957226, 0.027435731259451285, 0.3370058327932599, 0.3212356880535753, 0.902354720241953, 0.20220349967595594, 0.1743357096565133, 0.15554115359688916, 0.13091380427738172, 0.12162454093756751, 0.11600777705767984, 0.09138042773817238, 0.8723266364225535, 0.8969539857420609, 0.9416720674011666, 0.9276301577014474, 0.8865845755022683, 0.8243681140635126, 0.060488226398790236, 0.009937351479801253, 0.009505292719809894, 0.009721322099805573, 0.01058543961978829, 0.01080146899978397, 0.01080146899978397, 0.01123352775977533, 0.011449557139771008, 0.013177792179736443, 0.0146899978397062, 0.017282350399654353, 0.020522791099589544, 0.02570749621948585, 0.932598833441348, 0.948801036941024, 0.7012313674659754, 0.06178440267876431, 0.06286454957874271, 0.0639446964787211, 0.06243249081875135, 0.057031756318859365, 0.05919205011881616, 0.05919205011881616, 0.06459278461870814, 0.06761719593864765, 0.0818751350183625, 0.11384748325772305, 0.1544610066969108, 0.24821775761503564, 0.3013609850939728], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BRE1.gap.json b/pfam_gap_rates/BRE1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a4bca244961c81399b136019d1b75e993b6441c
--- /dev/null
+++ b/pfam_gap_rates/BRE1.gap.json
@@ -0,0 +1 @@
+{"family": "BRE1", "n_seqs": 189, "length": 99, "gap_rates": [0.3915343915343915, 0.07936507936507936, 0.031746031746031744, 0.026455026455026454, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.015873015873015872, 0.015873015873015872, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005291005291005291, 0.0, 0.0, 0.0, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.708994708994709, 0.7142857142857143, 0.7142857142857143, 0.6931216931216931, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.026455026455026454, 0.037037037037037035, 0.042328042328042326, 0.06878306878306878, 0.08465608465608465, 0.14814814814814814, 0.26455026455026454], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BTG.gap.json b/pfam_gap_rates/BTG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1ca162d9bd62af86afbb2d6c5850c631b5cbf0b
--- /dev/null
+++ b/pfam_gap_rates/BTG.gap.json
@@ -0,0 +1 @@
+{"family": "BTG", "n_seqs": 289, "length": 121, "gap_rates": [0.21453287197231835, 0.21107266435986158, 0.2041522491349481, 0.18339100346020762, 0.1245674740484429, 0.10034602076124567, 0.10034602076124567, 0.10034602076124567, 0.10034602076124567, 0.09342560553633218, 0.09342560553633218, 0.09342560553633218, 0.09342560553633218, 0.08996539792387544, 0.08650519031141868, 0.08304498269896193, 0.08304498269896193, 0.07958477508650519, 0.9377162629757786, 0.5951557093425606, 0.5432525951557093, 0.08996539792387544, 0.08650519031141868, 0.08304498269896193, 0.0657439446366782, 0.0657439446366782, 0.05536332179930796, 0.05536332179930796, 0.04844290657439446, 0.04844290657439446, 0.04498269896193772, 0.03460207612456748, 0.031141868512110725, 0.031141868512110725, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.01730103806228374, 0.01730103806228374, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.01730103806228374, 0.02768166089965398, 0.031141868512110725, 0.03460207612456748, 0.03460207612456748, 0.02768166089965398, 0.020761245674740483, 0.020761245674740483, 0.02422145328719723, 0.03460207612456748, 0.03460207612456748, 0.03460207612456748, 0.03460207612456748, 0.020761245674740483, 0.01730103806228374, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.11072664359861592, 0.07612456747404844, 0.03806228373702422, 0.5363321799307958, 0.4290657439446367, 0.031141868512110725, 0.01384083044982699, 0.02422145328719723, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.02422145328719723, 0.01730103806228374, 0.01730103806228374, 0.01730103806228374, 0.03460207612456748, 0.02422145328719723, 0.01730103806228374, 0.020761245674740483, 0.020761245674740483, 0.25259515570934254, 0.2422145328719723, 0.9411764705882353, 0.9480968858131488, 0.9411764705882353, 0.9411764705882353, 0.02422145328719723, 0.02422145328719723, 0.02768166089965398, 0.02768166089965398, 0.031141868512110725, 0.031141868512110725, 0.031141868512110725, 0.03806228373702422, 0.03806228373702422, 0.03806228373702422, 0.03806228373702422, 0.03806228373702422, 0.03806228373702422, 0.04152249134948097, 0.04152249134948097, 0.05536332179930796, 0.07612456747404844, 0.08304498269896193, 0.08996539792387544, 0.8719723183391004, 0.12802768166089964, 0.16262975778546712, 0.2041522491349481, 0.2975778546712803, 0.3460207612456747, 0.4532871972318339, 0.5501730103806228], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BURP.gap.json b/pfam_gap_rates/BURP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..326dafdb07abd72ffde8a0f2f8ec79d044bbf25a
--- /dev/null
+++ b/pfam_gap_rates/BURP.gap.json
@@ -0,0 +1 @@
+{"family": "BURP", "n_seqs": 410, "length": 231, "gap_rates": [0.6146341463414634, 0.3024390243902439, 0.2926829268292683, 0.2926829268292683, 0.29024390243902437, 0.28780487804878047, 0.2804878048780488, 0.2731707317073171, 0.2707317073170732, 0.2707317073170732, 0.2707317073170732, 0.2658536585365854, 0.2634146341463415, 0.25609756097560976, 0.25121951219512195, 0.28292682926829266, 0.2780487804878049, 0.2731707317073171, 0.28536585365853656, 0.2975609756097561, 0.6414634146341464, 0.6707317073170732, 0.5317073170731708, 0.43658536585365854, 0.2804878048780488, 0.23414634146341465, 0.22682926829268293, 0.22682926829268293, 0.22682926829268293, 0.22682926829268293, 0.22682926829268293, 0.22682926829268293, 0.22682926829268293, 0.22682926829268293, 0.22926829268292684, 0.23170731707317074, 0.22439024390243903, 0.22439024390243903, 0.22439024390243903, 0.22439024390243903, 0.22439024390243903, 0.22439024390243903, 0.23658536585365852, 0.23658536585365852, 0.22195121951219512, 0.21707317073170732, 0.21951219512195122, 0.21951219512195122, 0.21951219512195122, 0.25853658536585367, 0.25609756097560976, 0.25365853658536586, 0.22195121951219512, 0.22195121951219512, 0.2634146341463415, 0.21707317073170732, 0.21951219512195122, 0.22195121951219512, 0.2146341463414634, 0.2121951219512195, 0.2121951219512195, 0.21707317073170732, 0.21951219512195122, 0.22195121951219512, 0.20243902439024392, 0.2121951219512195, 0.2097560975609756, 0.2073170731707317, 0.2121951219512195, 0.2048780487804878, 0.1926829268292683, 0.17560975609756097, 0.17560975609756097, 0.17560975609756097, 0.2, 0.21951219512195122, 0.9121951219512195, 0.21951219512195122, 0.1975609756097561, 0.1902439024390244, 0.18536585365853658, 0.1878048780487805, 0.18292682926829268, 0.18292682926829268, 0.18292682926829268, 0.18048780487804877, 0.17804878048780487, 0.17804878048780487, 0.18048780487804877, 0.18292682926829268, 0.18292682926829268, 0.17317073170731706, 0.17804878048780487, 0.17804878048780487, 0.17804878048780487, 0.17804878048780487, 0.17560975609756097, 0.17317073170731706, 0.17317073170731706, 0.18048780487804877, 0.18048780487804877, 0.8317073170731707, 0.5829268292682926, 0.1878048780487805, 0.1926829268292683, 0.20243902439024392, 0.1926829268292683, 0.1951219512195122, 0.1951219512195122, 0.1926829268292683, 0.1902439024390244, 0.1878048780487805, 0.2, 0.2, 0.1975609756097561, 0.1975609756097561, 0.8878048780487805, 0.9463414634146341, 0.9146341463414634, 0.6902439024390243, 0.4146341463414634, 0.4121951219512195, 0.36341463414634145, 0.1902439024390244, 0.18292682926829268, 0.18292682926829268, 0.18048780487804877, 0.18048780487804877, 0.17317073170731706, 0.17317073170731706, 0.724390243902439, 0.17317073170731706, 0.17317073170731706, 0.17560975609756097, 0.17560975609756097, 0.17317073170731706, 0.748780487804878, 0.8097560975609757, 0.6268292682926829, 0.3048780487804878, 0.17073170731707318, 0.16097560975609757, 0.16097560975609757, 0.16097560975609757, 0.15365853658536585, 0.15365853658536585, 0.15121951219512195, 0.14634146341463414, 0.14390243902439023, 0.14634146341463414, 0.14146341463414633, 0.14146341463414633, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.13902439024390245, 0.14146341463414633, 0.14390243902439023, 0.14878048780487804, 0.14878048780487804, 0.14878048780487804, 0.15121951219512195, 0.15121951219512195, 0.15121951219512195, 0.8658536585365854, 0.15853658536585366, 0.14878048780487804, 0.14878048780487804, 0.15121951219512195, 0.15121951219512195, 0.14634146341463414, 0.14878048780487804, 0.15121951219512195, 0.15121951219512195, 0.15121951219512195, 0.6926829268292682, 0.16097560975609757, 0.15609756097560976, 0.15853658536585366, 0.8707317073170732, 0.15853658536585366, 0.18536585365853658, 0.14878048780487804, 0.926829268292683, 0.948780487804878, 0.7439024390243902, 0.14390243902439023, 0.14634146341463414, 0.14390243902439023, 0.14390243902439023, 0.14390243902439023, 0.14390243902439023, 0.14634146341463414, 0.14634146341463414, 0.14878048780487804, 0.15365853658536585, 0.15365853658536585, 0.15365853658536585, 0.15365853658536585, 0.15121951219512195, 0.14878048780487804, 0.15121951219512195, 0.17804878048780487, 0.23170731707317074, 0.2, 0.17073170731707318, 0.16341463414634147, 0.15853658536585366, 0.15853658536585366, 0.16097560975609757, 0.15853658536585366, 0.15365853658536585, 0.16097560975609757, 0.16829268292682928, 0.23902439024390243, 0.16585365853658537, 0.16341463414634147, 0.16341463414634147, 0.16341463414634147, 0.16341463414634147, 0.16829268292682928, 0.17073170731707318, 0.17560975609756097, 0.18292682926829268, 0.17560975609756097, 0.17804878048780487, 0.17804878048780487, 0.18536585365853658, 0.1951219512195122, 0.22682926829268293, 0.8195121951219512], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_luciferase.gap.json b/pfam_gap_rates/Bac_luciferase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f26606f75cf00cb6df7608562922525c963b3890
--- /dev/null
+++ b/pfam_gap_rates/Bac_luciferase.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_luciferase", "n_seqs": 5000, "length": 419, "gap_rates": [0.8766, 0.8078, 0.7672, 0.7414, 0.7282, 0.7122, 0.6864, 0.6618, 0.6206, 0.5976, 0.5772, 0.6132, 0.5876, 0.5396, 0.4976, 0.4566, 0.4178, 0.3896, 0.3992, 0.819, 0.8538, 0.871, 0.8348, 0.7946, 0.4002, 0.1618, 0.1256, 0.1158, 0.1014, 0.0904, 0.0828, 0.0684, 0.0614, 0.0582, 0.0542, 0.0524, 0.052, 0.0522, 0.0522, 0.0514, 0.05, 0.0492, 0.0482, 0.0486, 0.0478, 0.047, 0.0468, 0.0468, 0.0466, 0.0462, 0.046, 0.062, 0.151, 0.2756, 0.2748, 0.272, 0.257, 0.5624, 0.6298, 0.7356, 0.815, 0.8466, 0.8696, 0.884, 0.895, 0.9392, 0.8928, 0.8802, 0.8548, 0.8368, 0.7558, 0.6806, 0.6086, 0.3762, 0.0552, 0.0486, 0.0452, 0.0436, 0.0432, 0.042, 0.0412, 0.0416, 0.0402, 0.0388, 0.0388, 0.0426, 0.0398, 0.0416, 0.0436, 0.0452, 0.0414, 0.0384, 0.0384, 0.0384, 0.039, 0.0388, 0.0386, 0.0386, 0.0388, 0.0384, 0.0378, 0.284, 0.0382, 0.0364, 0.036, 0.0372, 0.0366, 0.0368, 0.0368, 0.0364, 0.0366, 0.0368, 0.0364, 0.0362, 0.0358, 0.0362, 0.0368, 0.0366, 0.0366, 0.0364, 0.0362, 0.0368, 0.0368, 0.0378, 0.0382, 0.0388, 0.0388, 0.039, 0.0396, 0.9486, 0.0398, 0.0416, 0.0416, 0.0428, 0.0446, 0.0456, 0.132, 0.0824, 0.0668, 0.0912, 0.9488, 0.0846, 0.0944, 0.5558, 0.8186, 0.6524, 0.5194, 0.0702, 0.0626, 0.0552, 0.0542, 0.0532, 0.0542, 0.0522, 0.0524, 0.0526, 0.0524, 0.0552, 0.057, 0.0554, 0.0542, 0.0574, 0.055, 0.0548, 0.0572, 0.0588, 0.0602, 0.2244, 0.1314, 0.7884, 0.8336, 0.85, 0.8526, 0.8546, 0.8554, 0.8558, 0.8566, 0.857, 0.8594, 0.9474, 0.8756, 0.858, 0.857, 0.8564, 0.8558, 0.855, 0.8534, 0.852, 0.8474, 0.8036, 0.7768, 0.1524, 0.1422, 0.147, 0.8332, 0.1268, 0.1186, 0.1172, 0.1022, 0.1, 0.1024, 0.2398, 0.1782, 0.1946, 0.9058, 0.942, 0.8046, 0.1556, 0.1352, 0.11, 0.0956, 0.0836, 0.065, 0.0628, 0.0636, 0.0656, 0.12, 0.1202, 0.1384, 0.5006, 0.9286, 0.8356, 0.1138, 0.0546, 0.6936, 0.053, 0.0508, 0.05, 0.0504, 0.051, 0.053, 0.0526, 0.7358, 0.0594, 0.0538, 0.054, 0.0544, 0.0546, 0.0548, 0.0552, 0.0546, 0.0546, 0.0556, 0.0582, 0.0552, 0.0554, 0.0564, 0.0578, 0.057, 0.0584, 0.0592, 0.7604, 0.9352, 0.9472, 0.9096, 0.5498, 0.1174, 0.0748, 0.0722, 0.0746, 0.0712, 0.0708, 0.0676, 0.0668, 0.0662, 0.066, 0.0658, 0.0686, 0.0686, 0.0696, 0.0804, 0.1888, 0.1854, 0.1806, 0.1512, 0.1126, 0.103, 0.1022, 0.3058, 0.2916, 0.2958, 0.9254, 0.9466, 0.8974, 0.1238, 0.1136, 0.107, 0.104, 0.1088, 0.1136, 0.1242, 0.1344, 0.1472, 0.154, 0.1614, 0.1648, 0.1688, 0.1798, 0.179, 0.1848, 0.1882, 0.1924, 0.1964, 0.1994, 0.2026, 0.2054, 0.2092, 0.783, 0.9084, 0.8266, 0.7654, 0.25, 0.263, 0.2658, 0.2808, 0.6118, 0.6044, 0.618, 0.6026, 0.694, 0.7202, 0.7338, 0.7718, 0.7846, 0.822, 0.837, 0.8572, 0.8912, 0.9192, 0.9322, 0.9464, 0.9372, 0.923, 0.9116, 0.8654, 0.848, 0.8264, 0.816, 0.7758, 0.7694, 0.7254, 0.7038, 0.686, 0.5858, 0.5944, 0.5744, 0.5508, 0.5288, 0.5088, 0.491, 0.469, 0.4138, 0.3926, 0.383, 0.3808, 0.426, 0.4128, 0.4014, 0.3812, 0.9228, 0.9366, 0.8992, 0.3594, 0.3528, 0.3418, 0.3344, 0.3288, 0.3266, 0.3106, 0.3092, 0.3094, 0.3088, 0.3106, 0.3124, 0.313, 0.315, 0.3304, 0.3346, 0.342, 0.418, 0.9356, 0.5724, 0.5154, 0.4744, 0.3872, 0.3732, 0.3578, 0.334, 0.3334, 0.3342, 0.3156, 0.8706, 0.9118, 0.9412, 0.9318, 0.8836, 0.8438, 0.3122, 0.3116, 0.312, 0.3126, 0.3126, 0.3132, 0.3136, 0.3144, 0.3154, 0.3162, 0.3166, 0.3194, 0.3282, 0.867, 0.348, 0.3792, 0.414, 0.4974, 0.5488, 0.5898, 0.671, 0.9064], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bact_transglu_N.gap.json b/pfam_gap_rates/Bact_transglu_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28afb3bfbf71174e546bfd4878da90fe3d53d879
--- /dev/null
+++ b/pfam_gap_rates/Bact_transglu_N.gap.json
@@ -0,0 +1 @@
+{"family": "Bact_transglu_N", "n_seqs": 938, "length": 80, "gap_rates": [0.4701492537313433, 0.13113006396588486, 0.07142857142857142, 0.054371002132196165, 0.046908315565031986, 0.04477611940298507, 0.04371002132196162, 0.04157782515991471, 0.04051172707889126, 0.04051172707889126, 0.039445628997867806, 0.039445628997867806, 0.039445628997867806, 0.039445628997867806, 0.03837953091684435, 0.03731343283582089, 0.03304904051172708, 0.021321961620469083, 0.01812366737739872, 0.01812366737739872, 0.014925373134328358, 0.013859275053304905, 0.011727078891257996, 0.007462686567164179, 0.008528784648187633, 0.008528784648187633, 0.008528784648187633, 0.008528784648187633, 0.008528784648187633, 0.010660980810234541, 0.010660980810234541, 0.008528784648187633, 0.008528784648187633, 0.008528784648187633, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.005330490405117271, 0.005330490405117271, 0.02025586353944563, 0.02025586353944563, 0.04371002132196162, 0.09381663113006397, 0.14072494669509594, 0.08848614072494669, 0.0906183368869936, 0.07782515991471216, 0.0031982942430703624, 0.0031982942430703624, 0.0031982942430703624, 0.0042643923240938165, 0.0042643923240938165, 0.0042643923240938165, 0.0042643923240938165, 0.0042643923240938165, 0.005330490405117271, 0.006396588486140725, 0.0042643923240938165, 0.0042643923240938165, 0.0042643923240938165, 0.0042643923240938165, 0.0042643923240938165, 0.0042643923240938165, 0.01279317697228145, 0.014925373134328358, 0.011727078891257996, 0.010660980810234541, 0.011727078891257996, 0.010660980810234541, 0.009594882729211088, 0.010660980810234541, 0.011727078891257996, 0.014925373134328358, 0.019189765458422176, 0.022388059701492536, 0.028784648187633263, 0.04584221748400853, 0.1460554371002132, 0.5053304904051172], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Baculo_F.gap.json b/pfam_gap_rates/Baculo_F.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c81f9322d5723dc67fa96651139201d0a67228b
--- /dev/null
+++ b/pfam_gap_rates/Baculo_F.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BatD.gap.json b/pfam_gap_rates/BatD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f82d5e10d11ee7eab59cd226d007ad427f45aea
--- /dev/null
+++ b/pfam_gap_rates/BatD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Beta-Casp.gap.json b/pfam_gap_rates/Beta-Casp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7da3a74b5a3d53a586458ffda6dd5a569cfbfe64
--- /dev/null
+++ b/pfam_gap_rates/Beta-Casp.gap.json
@@ -0,0 +1 @@
+{"family": "Beta-Casp", "n_seqs": 2040, "length": 184, "gap_rates": [0.22892156862745097, 0.125, 0.11274509803921569, 0.08529411764705883, 0.07892156862745098, 0.07647058823529412, 0.07254901960784314, 0.06568627450980392, 0.06519607843137255, 0.061764705882352944, 0.060784313725490195, 0.058823529411764705, 0.06519607843137255, 0.06764705882352941, 0.19509803921568628, 0.17990196078431372, 0.7446078431372549, 0.4534313725490196, 0.7627450980392156, 0.9352941176470588, 0.9475490196078431, 0.9284313725490196, 0.30245098039215684, 0.08676470588235294, 0.07254901960784314, 0.8794117647058823, 0.043627450980392155, 0.028431372549019607, 0.024509803921568627, 0.025, 0.024019607843137256, 0.024019607843137256, 0.024019607843137256, 0.1161764705882353, 0.025, 0.024509803921568627, 0.02303921568627451, 0.02303921568627451, 0.02303921568627451, 0.02303921568627451, 0.022549019607843137, 0.021568627450980392, 0.19215686274509805, 0.19215686274509805, 0.19117647058823528, 0.19117647058823528, 0.4068627450980392, 0.4083333333333333, 0.432843137254902, 0.4372549019607843, 0.4411764705882353, 0.44509803921568625, 0.4588235294117647, 0.4838235294117647, 0.5107843137254902, 0.5303921568627451, 0.5534313725490196, 0.6205882352941177, 0.6416666666666667, 0.6955882352941176, 0.8740196078431373, 0.6666666666666666, 0.6279411764705882, 0.6004901960784313, 0.5431372549019607, 0.5200980392156863, 0.5004901960784314, 0.4666666666666667, 0.4534313725490196, 0.4441176470588235, 0.4377450980392157, 0.43333333333333335, 0.4308823529411765, 0.41862745098039217, 0.5691176470588235, 0.41715686274509806, 0.40588235294117647, 0.4, 0.7671568627450981, 0.5142156862745098, 0.47990196078431374, 0.44803921568627453, 0.421078431372549, 0.09705882352941177, 0.09509803921568627, 0.09754901960784314, 0.8495098039215686, 0.5833333333333334, 0.12450980392156863, 0.49019607843137253, 0.8480392156862745, 0.6460784313725491, 0.4980392156862745, 0.3254901960784314, 0.045098039215686274, 0.5142156862745098, 0.5166666666666667, 0.5210784313725491, 0.5269607843137255, 0.5343137254901961, 0.5441176470588235, 0.5622549019607843, 0.5931372549019608, 0.6823529411764706, 0.7392156862745098, 0.8137254901960784, 0.8313725490196079, 0.8534313725490196, 0.8622549019607844, 0.8720588235294118, 0.8857843137254902, 0.9416666666666667, 0.9485294117647058, 0.95, 0.95, 0.9490196078431372, 0.9475490196078431, 0.9254901960784314, 0.8754901960784314, 0.8666666666666667, 0.8607843137254902, 0.8480392156862745, 0.8240196078431372, 0.7897058823529411, 0.707843137254902, 0.6102941176470589, 0.5700980392156862, 0.5549019607843138, 0.538235294117647, 0.5308823529411765, 0.5225490196078432, 0.5200980392156863, 0.5147058823529411, 0.5137254901960784, 0.029901960784313727, 0.03333333333333333, 0.018137254901960786, 0.014705882352941176, 0.012745098039215686, 0.011764705882352941, 0.011274509803921568, 0.010784313725490196, 0.010294117647058823, 0.010784313725490196, 0.010784313725490196, 0.010784313725490196, 0.010784313725490196, 0.010784313725490196, 0.010294117647058823, 0.011764705882352941, 0.011274509803921568, 0.011274509803921568, 0.011274509803921568, 0.011764705882352941, 0.012254901960784314, 0.011764705882352941, 0.011764705882352941, 0.012745098039215686, 0.011764705882352941, 0.012745098039215686, 0.012254901960784314, 0.012745098039215686, 0.013235294117647059, 0.012745098039215686, 0.012745098039215686, 0.012745098039215686, 0.012745098039215686, 0.012745098039215686, 0.013235294117647059, 0.013725490196078431, 0.015196078431372549, 0.025490196078431372, 0.02696078431372549, 0.06911764705882353, 0.08480392156862746, 0.0965686274509804, 0.10637254901960784, 0.11274509803921569, 0.11666666666666667, 0.11960784313725491, 0.12156862745098039, 0.12598039215686274, 0.1627450980392157, 0.3176470588235294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Beta_elim_lyase.gap.json b/pfam_gap_rates/Beta_elim_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32444585f05d30c8e6c9b49882216da13001504e
--- /dev/null
+++ b/pfam_gap_rates/Beta_elim_lyase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BicD.gap.json b/pfam_gap_rates/BicD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62c917d3c94e7ccedff58e4b0aee50492f582c83
--- /dev/null
+++ b/pfam_gap_rates/BicD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Big_3.gap.json b/pfam_gap_rates/Big_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bdd5caaf8b3c99b55396bc31ccf4b8ba4cbb1ec3
--- /dev/null
+++ b/pfam_gap_rates/Big_3.gap.json
@@ -0,0 +1 @@
+{"family": "Big_3", "n_seqs": 414, "length": 83, "gap_rates": [0.8961352657004831, 0.5748792270531401, 0.33816425120772947, 0.2536231884057971, 0.1932367149758454, 0.15942028985507245, 0.11352657004830918, 0.0893719806763285, 0.0748792270531401, 0.07004830917874397, 0.06521739130434782, 0.057971014492753624, 0.043478260869565216, 0.036231884057971016, 0.033816425120772944, 0.036231884057971016, 0.036231884057971016, 0.03140096618357488, 0.021739130434782608, 0.016908212560386472, 0.014492753623188406, 0.014492753623188406, 0.01932367149758454, 0.012077294685990338, 0.014492753623188406, 0.012077294685990338, 0.012077294685990338, 0.00966183574879227, 0.007246376811594203, 0.00966183574879227, 0.3961352657004831, 0.821256038647343, 0.9251207729468599, 0.9492753623188406, 0.8792270531400966, 0.463768115942029, 0.033816425120772944, 0.01932367149758454, 0.026570048309178744, 0.024154589371980676, 0.026570048309178744, 0.01932367149758454, 0.01932367149758454, 0.014492753623188406, 0.021739130434782608, 0.024154589371980676, 0.8454106280193237, 0.9227053140096618, 0.9323671497584541, 0.8864734299516909, 0.7560386473429952, 0.43478260869565216, 0.04830917874396135, 0.024154589371980676, 0.021739130434782608, 0.01932367149758454, 0.021739130434782608, 0.01932367149758454, 0.024154589371980676, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.024154589371980676, 0.036231884057971016, 0.04106280193236715, 0.04589371980676329, 0.6908212560386473, 0.785024154589372, 0.855072463768116, 0.7463768115942029, 0.6618357487922706, 0.06763285024154589, 0.09903381642512077, 0.10869565217391304, 0.11835748792270531, 0.12318840579710146, 0.1473429951690821, 0.16908212560386474, 0.2463768115942029, 0.32608695652173914], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Biotin_carb_C.gap.json b/pfam_gap_rates/Biotin_carb_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0ca4bf08877bc5a64efab6bf461fe540bb3321c
--- /dev/null
+++ b/pfam_gap_rates/Biotin_carb_C.gap.json
@@ -0,0 +1 @@
+{"family": "Biotin_carb_C", "n_seqs": 4939, "length": 115, "gap_rates": [0.09941283660660052, 0.029155699534318687, 0.028345818991698725, 0.02713099817776878, 0.026726057906458798, 0.026726057906458798, 0.026726057906458798, 0.02773840858473375, 0.030168050212593642, 0.030977930755213608, 0.025713707228183842, 0.1714922048997773, 0.025713707228183842, 0.023486535735978944, 0.021259364243774042, 0.017007491395019236, 0.015387730309779307, 0.014982790038469326, 0.014375379631504353, 0.01356549908888439, 0.013160558817574408, 0.013160558817574408, 0.012755618546264426, 0.012553148410609435, 0.012553148410609435, 0.012553148410609435, 0.9022069244786394, 0.9198218262806236, 0.9252885199433084, 0.9143551326179389, 0.8048187892285887, 0.07612877100627657, 0.06924478639400689, 0.012553148410609435, 0.010933387325369508, 0.011135857461024499, 0.011135857461024499, 0.010528447054059526, 0.010528447054059526, 0.010528447054059526, 0.010730917189714518, 0.010325976918404535, 0.010933387325369508, 0.88762907471148, 0.01133832759667949, 0.011135857461024499, 0.011743267867989472, 0.011135857461024499, 0.010528447054059526, 0.010933387325369508, 0.011540797732334481, 0.010933387325369508, 0.010730917189714518, 0.010933387325369508, 0.010528447054059526, 0.010123506782749545, 0.009718566511439562, 0.009313626240129581, 0.008098805426199635, 0.008706215833164608, 0.009516096375784572, 0.009313626240129581, 0.009516096375784572, 0.00911115610447459, 0.00911115610447459, 0.009718566511439562, 0.009718566511439562, 0.009718566511439562, 0.008908685968819599, 0.009516096375784572, 0.009921036647094554, 0.009313626240129581, 0.009313626240129581, 0.00911115610447459, 0.00911115610447459, 0.008706215833164608, 0.008908685968819599, 0.008908685968819599, 0.008908685968819599, 0.008706215833164608, 0.008908685968819599, 0.008908685968819599, 0.009516096375784572, 0.010325976918404535, 0.010325976918404535, 0.9143551326179389, 0.010933387325369508, 0.011945738003644462, 0.014172909495849362, 0.015590200445434299, 0.01599514071674428, 0.017007491395019236, 0.017007491395019236, 0.017209961530674226, 0.017614901801984207, 0.018019842073294188, 0.018627252480259163, 0.019032192751569144, 0.019639603158534115, 0.023486535735978944, 0.023689005871633934, 0.024093946142943915, 0.02490382668556388, 0.02510629682121887, 0.02510629682121887, 0.02530876695687386, 0.028143348856043734, 0.02956063980562867, 0.031180400890868598, 0.03300263211176351, 0.0334075723830735, 0.036039684146588376, 0.042518728487548084, 0.1089289329823851, 0.7432678679894715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BofC_C.gap.json b/pfam_gap_rates/BofC_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03685ca1df817dfb55ff29828d0e73e9a798f07b
--- /dev/null
+++ b/pfam_gap_rates/BofC_C.gap.json
@@ -0,0 +1 @@
+{"family": "BofC_C", "n_seqs": 122, "length": 81, "gap_rates": [0.5737704918032787, 0.4672131147540984, 0.4098360655737705, 0.4098360655737705, 0.38524590163934425, 0.3524590163934426, 0.319672131147541, 0.29508196721311475, 0.2459016393442623, 0.19672131147540983, 0.13934426229508196, 0.10655737704918032, 0.10655737704918032, 0.12295081967213115, 0.08196721311475409, 0.06557377049180328, 0.26229508196721313, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.01639344262295082, 0.02459016393442623, 0.03278688524590164, 0.11475409836065574, 0.9426229508196722, 0.9426229508196722, 0.9426229508196722, 0.09836065573770492, 0.08196721311475409, 0.8852459016393442, 0.02459016393442623, 0.01639344262295082, 0.01639344262295082, 0.02459016393442623, 0.040983606557377046, 0.02459016393442623, 0.01639344262295082, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.0, 0.0, 0.00819672131147541, 0.00819672131147541, 0.01639344262295082, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.7704918032786885, 0.7786885245901639, 0.7786885245901639, 0.7704918032786885, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.01639344262295082, 0.01639344262295082, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.05737704918032787, 0.09836065573770492, 0.30327868852459017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BrnT_toxin.gap.json b/pfam_gap_rates/BrnT_toxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..950fe2dc06737026e6e4f2517aecfb8b5def7d9d
--- /dev/null
+++ b/pfam_gap_rates/BrnT_toxin.gap.json
@@ -0,0 +1 @@
+{"family": "BrnT_toxin", "n_seqs": 756, "length": 88, "gap_rates": [0.12566137566137567, 0.1111111111111111, 0.10846560846560846, 0.10317460317460317, 0.15873015873015872, 0.09788359788359788, 0.09656084656084656, 0.08333333333333333, 0.07936507936507936, 0.07275132275132275, 0.06481481481481481, 0.05555555555555555, 0.05291005291005291, 0.05291005291005291, 0.05026455026455026, 0.04497354497354497, 0.04365079365079365, 0.042328042328042326, 0.047619047619047616, 0.03835978835978836, 0.03968253968253968, 0.03835978835978836, 0.09259259259259259, 0.037037037037037035, 0.05952380952380952, 0.041005291005291, 0.06613756613756613, 0.04365079365079365, 0.031746031746031744, 0.03571428571428571, 0.05952380952380952, 0.03042328042328042, 0.031746031746031744, 0.021164021164021163, 0.0291005291005291, 0.2923280423280423, 0.2619047619047619, 0.9457671957671958, 0.09259259259259259, 0.08333333333333333, 0.07275132275132275, 0.9484126984126984, 0.9246031746031746, 0.03439153439153439, 0.027777777777777776, 0.021164021164021163, 0.023809523809523808, 0.02513227513227513, 0.021164021164021163, 0.01984126984126984, 0.031746031746031744, 0.503968253968254, 0.08597883597883597, 0.026455026455026454, 0.03042328042328042, 0.0291005291005291, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.027777777777777776, 0.0291005291005291, 0.03306878306878307, 0.037037037037037035, 0.8822751322751323, 0.03439153439153439, 0.8333333333333334, 0.9417989417989417, 0.9338624338624338, 0.8055555555555556, 0.03968253968253968, 0.041005291005291, 0.9365079365079365, 0.041005291005291, 0.042328042328042326, 0.046296296296296294, 0.046296296296296294, 0.05555555555555555, 0.056878306878306875, 0.06481481481481481, 0.07275132275132275, 0.08597883597883597, 0.14682539682539683, 0.19973544973544974], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/C1_1.gap.json b/pfam_gap_rates/C1_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f430baa68b1601cefc7ea5784c682c276816011
--- /dev/null
+++ b/pfam_gap_rates/C1_1.gap.json
@@ -0,0 +1 @@
+{"family": "C1_1", "n_seqs": 3225, "length": 55, "gap_rates": [0.06604651162790698, 0.06201550387596899, 0.05767441860465116, 0.04682170542635659, 0.03813953488372093, 0.028217054263565893, 0.02201550387596899, 0.06945736434108526, 0.0337984496124031, 0.011782945736434108, 0.009612403100775194, 0.005891472868217054, 0.004341085271317829, 0.004341085271317829, 0.004341085271317829, 0.004031007751937985, 0.0037209302325581397, 0.0034108527131782944, 0.0034108527131782944, 0.0031007751937984496, 0.0021705426356589145, 0.9491472868217055, 0.9429457364341085, 0.1869767441860465, 0.15813953488372093, 0.8310077519379845, 0.09178294573643411, 0.035968992248062014, 0.0027906976744186047, 0.0018604651162790699, 0.0018604651162790699, 0.0018604651162790699, 0.0018604651162790699, 0.0021705426356589145, 0.0018604651162790699, 0.014263565891472868, 0.013023255813953489, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013953488372093023, 0.014883720930232559, 0.014883720930232559, 0.014883720930232559, 0.014883720930232559, 0.01612403100775194, 0.018604651162790697, 0.02883720930232558, 0.043410852713178294, 0.056434108527131786, 0.06976744186046512, 0.0924031007751938, 0.11255813953488372, 0.22697674418604652, 0.6412403100775194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/C4.gap.json b/pfam_gap_rates/C4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..788d77cac63624da1b0484606766384380b0c033
--- /dev/null
+++ b/pfam_gap_rates/C4.gap.json
@@ -0,0 +1 @@
+{"family": "C4", "n_seqs": 490, "length": 117, "gap_rates": [0.9326530612244898, 0.14081632653061224, 0.07959183673469387, 0.07346938775510205, 0.07142857142857142, 0.07142857142857142, 0.06938775510204082, 0.06938775510204082, 0.06938775510204082, 0.06938775510204082, 0.0673469387755102, 0.0653061224489796, 0.0653061224489796, 0.0673469387755102, 0.0653061224489796, 0.0653061224489796, 0.06326530612244897, 0.06326530612244897, 0.06326530612244897, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0653061224489796, 0.0653061224489796, 0.06326530612244897, 0.06326530612244897, 0.0653061224489796, 0.05918367346938776, 0.05918367346938776, 0.0653061224489796, 0.06938775510204082, 0.0653061224489796, 0.6061224489795919, 0.07142857142857142, 0.07346938775510205, 0.07346938775510205, 0.07346938775510205, 0.06938775510204082, 0.07346938775510205, 0.07142857142857142, 0.07142857142857142, 0.05714285714285714, 0.061224489795918366, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.06938775510204082, 0.05714285714285714, 0.05714285714285714, 0.05510204081632653, 0.053061224489795916, 0.053061224489795916, 0.053061224489795916, 0.053061224489795916, 0.053061224489795916, 0.07755102040816327, 0.746938775510204, 0.061224489795918366, 0.05918367346938776, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05918367346938776, 0.05714285714285714, 0.5265306122448979, 0.05714285714285714, 0.05510204081632653, 0.05714285714285714, 0.05510204081632653, 0.05510204081632653, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.5040816326530613, 0.7224489795918367, 0.6040816326530613, 0.5265306122448979, 0.5142857142857142, 0.8551020408163266, 0.4714285714285714, 0.3, 0.10204081632653061, 0.08571428571428572, 0.7326530612244898, 0.08163265306122448, 0.08775510204081632, 0.08979591836734693, 0.12448979591836734, 0.11632653061224489, 0.09591836734693877, 0.08775510204081632, 0.09183673469387756, 0.09795918367346938, 0.11836734693877551, 0.44285714285714284, 0.11632653061224489, 0.09387755102040816, 0.09387755102040816, 0.09387755102040816, 0.09183673469387756, 0.09183673469387756, 0.09183673469387756, 0.09591836734693877, 0.09795918367346938, 0.11428571428571428, 0.11836734693877551, 0.12244897959183673, 0.8346938775510204], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAF1C_H4-bd.gap.json b/pfam_gap_rates/CAF1C_H4-bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a155e292f74c3a81abca7b59f352202efa21fed4
--- /dev/null
+++ b/pfam_gap_rates/CAF1C_H4-bd.gap.json
@@ -0,0 +1 @@
+{"family": "CAF1C_H4-bd", "n_seqs": 867, "length": 88, "gap_rates": [0.3690888119953864, 0.17301038062283736, 0.12341407151095732, 0.08419838523644751, 0.05767012687427912, 0.04728950403690888, 0.03344867358708189, 0.02883506343713956, 0.025374855824682813, 0.02306805074971165, 0.3829296424452134, 0.3829296424452134, 0.3806228373702422, 0.01845444059976932, 0.01845444059976932, 0.01730103806228374, 0.016147635524798153, 0.012687427912341407, 0.012687427912341407, 0.00922722029988466, 0.00922722029988466, 0.010380622837370242, 0.00922722029988466, 0.00922722029988466, 0.006920415224913495, 0.006920415224913495, 0.006920415224913495, 0.006920415224913495, 0.006920415224913495, 0.0057670126874279125, 0.006920415224913495, 0.726643598615917, 0.7324106113033448, 0.734717416378316, 0.734717416378316, 0.7427912341407151, 0.7474048442906575, 0.734717416378316, 0.734717416378316, 0.7324106113033448, 0.7324106113033448, 0.726643598615917, 0.010380622837370242, 0.0196078431372549, 0.031141868512110725, 0.881199538638985, 0.936562860438293, 0.7612456747404844, 0.049596309111880045, 0.19953863898500576, 0.4140715109573241, 0.3771626297577855, 0.30680507497116494, 0.5547866205305652, 0.356401384083045, 0.29988465974625145, 0.2952710495963091, 0.2895040369088812, 0.28835063437139563, 0.28143021914648214, 0.2664359861591695, 0.012687427912341407, 0.012687427912341407, 0.012687427912341407, 0.6378316032295271, 0.012687427912341407, 0.012687427912341407, 0.016147635524798153, 0.01845444059976932, 0.02191464821222607, 0.1845444059976932, 0.903114186851211, 0.8973471741637832, 0.0265282583621684, 0.0265282583621684, 0.02883506343713956, 0.029988465974625143, 0.03344867358708189, 0.03344867358708189, 0.03460207612456748, 0.03806228373702422, 0.04152249134948097, 0.04382929642445214, 0.05074971164936563, 0.06343713956170703, 0.08996539792387544, 0.15916955017301038, 0.6666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAP.gap.json b/pfam_gap_rates/CAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34efa35e36a2dbbe520273a83f4b294725f6de26
--- /dev/null
+++ b/pfam_gap_rates/CAP.gap.json
@@ -0,0 +1 @@
+{"family": "CAP", "n_seqs": 5000, "length": 176, "gap_rates": [0.5658, 0.2826, 0.1826, 0.1336, 0.1218, 0.1186, 0.1112, 0.1058, 0.7364, 0.7548, 0.8238, 0.8382, 0.8492, 0.857, 0.8952, 0.9048, 0.9284, 0.9018, 0.8926, 0.8522, 0.8392, 0.836, 0.7594, 0.7376, 0.7322, 0.0962, 0.0914, 0.0892, 0.0848, 0.077, 0.0728, 0.0706, 0.0662, 0.057, 0.0494, 0.048, 0.0476, 0.047, 0.0444, 0.042, 0.0412, 0.04, 0.0394, 0.039, 0.0384, 0.0384, 0.0384, 0.038, 0.0388, 0.0386, 0.2338, 0.2328, 0.302, 0.3254, 0.8076, 0.9202, 0.942, 0.8776, 0.732, 0.1126, 0.0992, 0.0838, 0.0726, 0.0622, 0.0544, 0.0532, 0.052, 0.05, 0.0512, 0.0526, 0.0602, 0.058, 0.0582, 0.0594, 0.0624, 0.0704, 0.0794, 0.0872, 0.103, 0.5418, 0.5994, 0.6318, 0.7154, 0.9284, 0.9404, 0.9468, 0.9342, 0.9048, 0.6516, 0.6174, 0.5796, 0.5026, 0.4278, 0.3854, 0.2916, 0.2126, 0.1774, 0.1484, 0.1206, 0.0798, 0.0584, 0.0468, 0.0404, 0.037, 0.0364, 0.044, 0.0394, 0.0376, 0.036, 0.0356, 0.0354, 0.0356, 0.0384, 0.4408, 0.4332, 0.4254, 0.428, 0.4318, 0.459, 0.4604, 0.4632, 0.4822, 0.4868, 0.4582, 0.6034, 0.776, 0.8304, 0.9066, 0.942, 0.9282, 0.8668, 0.8024, 0.6474, 0.4842, 0.4456, 0.4332, 0.0474, 0.0428, 0.0422, 0.0426, 0.0584, 0.0538, 0.0814, 0.0592, 0.0612, 0.062, 0.0628, 0.0632, 0.064, 0.065, 0.067, 0.0686, 0.0766, 0.0854, 0.096, 0.1082, 0.1228, 0.1446, 0.1592, 0.2294, 0.2648, 0.822, 0.8694, 0.9298, 0.9478, 0.8926, 0.8496, 0.7434, 0.6552, 0.5696, 0.3862, 0.2674, 0.281, 0.3202, 0.3816, 0.435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAP_GLY.gap.json b/pfam_gap_rates/CAP_GLY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb956d1290c2244878ea9c6b133dd62342f03b8a
--- /dev/null
+++ b/pfam_gap_rates/CAP_GLY.gap.json
@@ -0,0 +1 @@
+{"family": "CAP_GLY", "n_seqs": 2002, "length": 78, "gap_rates": [0.4160839160839161, 0.2712287712287712, 0.23726273726273725, 0.21428571428571427, 0.1918081918081918, 0.17682317682317683, 0.8196803196803197, 0.9180819180819181, 0.8596403596403597, 0.7002997002997003, 0.2012987012987013, 0.2127872127872128, 0.08441558441558442, 0.061938061938061936, 0.046453546453546456, 0.03896103896103896, 0.03296703296703297, 0.029970029970029972, 0.028471528471528472, 0.026973026973026972, 0.025474525474525476, 0.024475524475524476, 0.022477522477522476, 0.02197802197802198, 0.02197802197802198, 0.025974025974025976, 0.9155844155844156, 0.9435564435564435, 0.8591408591408591, 0.036463536463536464, 0.042457542457542456, 0.03296703296703297, 0.013986013986013986, 0.9340659340659341, 0.9000999000999002, 0.008491508491508492, 0.00949050949050949, 0.006993006993006993, 0.006493506493506494, 0.005994005994005994, 0.005494505494505495, 0.004995004995004995, 0.004495504495504496, 0.002997002997002997, 0.003996003996003996, 0.8991008991008991, 0.939060939060939, 0.7032967032967034, 0.003996003996003996, 0.005994005994005994, 0.041458541458541456, 0.006993006993006993, 0.007492507492507493, 0.006993006993006993, 0.008991008991008992, 0.012987012987012988, 0.012487512487512488, 0.015984015984015984, 0.01998001998001998, 0.02047952047952048, 0.024975024975024976, 0.026473526473526472, 0.028971028971028972, 0.03696303696303696, 0.04845154845154845, 0.8691308691308691, 0.05444555444555445, 0.057942057942057944, 0.057942057942057944, 0.06043956043956044, 0.06343656343656344, 0.06793206793206794, 0.07392607392607392, 0.07592407592407592, 0.0924075924075924, 0.13886113886113885, 0.2562437562437562, 0.5724275724275725], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAP_assoc_N.gap.json b/pfam_gap_rates/CAP_assoc_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4581bb2b5c21a16b97c605b9b2ea0a79e0b8e185
--- /dev/null
+++ b/pfam_gap_rates/CAP_assoc_N.gap.json
@@ -0,0 +1 @@
+{"family": "CAP_assoc_N", "n_seqs": 156, "length": 145, "gap_rates": [0.1346153846153846, 0.07051282051282051, 0.05128205128205128, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.03205128205128205, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.01282051282051282, 0.01282051282051282, 0.00641025641025641, 0.01282051282051282, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.0, 0.0, 0.9487179487179487, 0.1346153846153846, 0.00641025641025641, 0.00641025641025641, 0.0, 0.0, 0.0, 0.019230769230769232, 0.019230769230769232, 0.00641025641025641, 0.0, 0.0, 0.0, 0.0, 0.7435897435897436, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.01282051282051282, 0.0, 0.6089743589743589, 0.02564102564102564, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.02564102564102564, 0.03205128205128205, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.0641025641025641, 0.0641025641025641, 0.0641025641025641, 0.42948717948717946, 0.4166666666666667, 0.3974358974358974, 0.08974358974358974, 0.08333333333333333, 0.07692307692307693, 0.07051282051282051, 0.07051282051282051, 0.07051282051282051, 0.07051282051282051, 0.07692307692307693, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.17307692307692307, 0.4358974358974359, 0.4230769230769231, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.7756410256410257, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.6025641025641025, 0.09615384615384616, 0.08974358974358974, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08974358974358974, 0.09615384615384616, 0.09615384615384616, 0.10256410256410256, 0.10256410256410256, 0.10256410256410256, 0.1282051282051282, 0.20512820512820512, 0.3076923076923077, 0.38461538461538464], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAT.gap.json b/pfam_gap_rates/CAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81a156da1f97fef3699206169f04c516ac54d14a
--- /dev/null
+++ b/pfam_gap_rates/CAT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CBF_beta.gap.json b/pfam_gap_rates/CBF_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e602f9f415c9b1d099d689005b610f614ff0c69
--- /dev/null
+++ b/pfam_gap_rates/CBF_beta.gap.json
@@ -0,0 +1 @@
+{"family": "CBF_beta", "n_seqs": 101, "length": 167, "gap_rates": [0.43564356435643564, 0.40594059405940597, 0.40594059405940597, 0.38613861386138615, 0.38613861386138615, 0.38613861386138615, 0.38613861386138615, 0.38613861386138615, 0.38613861386138615, 0.38613861386138615, 0.38613861386138615, 0.37623762376237624, 0.36633663366336633, 0.3564356435643564, 0.3564356435643564, 0.3564356435643564, 0.3564356435643564, 0.3465346534653465, 0.3465346534653465, 0.3465346534653465, 0.3465346534653465, 0.3465346534653465, 0.3465346534653465, 0.3465346534653465, 0.33663366336633666, 0.2871287128712871, 0.27722772277227725, 0.2871287128712871, 0.297029702970297, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.297029702970297, 0.2871287128712871, 0.2871287128712871, 0.27722772277227725, 0.27722772277227725, 0.27722772277227725, 0.27722772277227725, 0.27722772277227725, 0.27722772277227725, 0.27722772277227725, 0.26732673267326734, 0.2871287128712871, 0.2871287128712871, 0.2871287128712871, 0.27722772277227725, 0.27722772277227725, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.26732673267326734, 0.49504950495049505, 0.5643564356435643, 0.5742574257425742, 0.5445544554455446, 0.49504950495049505, 0.43564356435643564, 0.42574257425742573, 0.42574257425742573, 0.49504950495049505, 0.4752475247524752, 0.40594059405940597, 0.26732673267326734, 0.25742574257425743, 0.25742574257425743, 0.25742574257425743, 0.25742574257425743, 0.24752475247524752, 0.25742574257425743, 0.25742574257425743, 0.297029702970297, 0.297029702970297, 0.3465346534653465, 0.3069306930693069, 0.2376237623762376, 0.2871287128712871, 0.297029702970297, 0.2871287128712871, 0.2871287128712871, 0.24752475247524752, 0.2079207920792079, 0.21782178217821782, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.2079207920792079, 0.2079207920792079, 0.21782178217821782, 0.22772277227722773, 0.22772277227722773, 0.2376237623762376, 0.24752475247524752, 0.24752475247524752, 0.2376237623762376, 0.22772277227722773, 0.2376237623762376, 0.25742574257425743, 0.33663366336633666, 0.3564356435643564, 0.36633663366336633, 0.3564356435643564, 0.3564356435643564, 0.3564356435643564, 0.3564356435643564, 0.3564356435643564, 0.3564356435643564, 0.36633663366336633, 0.36633663366336633, 0.36633663366336633, 0.36633663366336633, 0.37623762376237624, 0.37623762376237624, 0.39603960396039606, 0.45544554455445546, 0.48514851485148514, 0.504950495049505, 0.504950495049505, 0.504950495049505, 0.504950495049505, 0.504950495049505, 0.5148514851485149, 0.5346534653465347, 0.5544554455445545, 0.5742574257425742, 0.693069306930693, 0.8712871287128713], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM53.gap.json b/pfam_gap_rates/CBM53.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f820ffe0b34e8efd07da0eaaa157cb3c9fbf850
--- /dev/null
+++ b/pfam_gap_rates/CBM53.gap.json
@@ -0,0 +1 @@
+{"family": "CBM53", "n_seqs": 288, "length": 106, "gap_rates": [0.5763888888888888, 0.1597222222222222, 0.07291666666666667, 0.06597222222222222, 0.059027777777777776, 0.052083333333333336, 0.04861111111111111, 0.04861111111111111, 0.06597222222222222, 0.2569444444444444, 0.3125, 0.9444444444444444, 0.4479166666666667, 0.28125, 0.23958333333333334, 0.14583333333333334, 0.2152777777777778, 0.15625, 0.8472222222222222, 0.9166666666666666, 0.8993055555555556, 0.8263888888888888, 0.13541666666666666, 0.03125, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.8194444444444444, 0.027777777777777776, 0.9270833333333334, 0.9097222222222222, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.9444444444444444, 0.027777777777777776, 0.027777777777777776, 0.059027777777777776, 0.07291666666666667, 0.2743055555555556, 0.0798611111111111, 0.04513888888888889, 0.03125, 0.034722222222222224, 0.04861111111111111, 0.8819444444444444, 0.90625, 0.9375, 0.8923611111111112, 0.8333333333333334, 0.5798611111111112, 0.3784722222222222, 0.34375, 0.3055555555555556, 0.28125, 0.2673611111111111, 0.19791666666666666, 0.010416666666666666, 0.006944444444444444, 0.003472222222222222, 0.003472222222222222, 0.006944444444444444, 0.006944444444444444, 0.010416666666666666, 0.003472222222222222, 0.006944444444444444, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.18055555555555555, 0.1111111111111111, 0.9375, 0.9340277777777778, 0.017361111111111112, 0.010416666666666666, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.2534722222222222, 0.06944444444444445, 0.09722222222222222, 0.7048611111111112, 0.9375, 0.6701388888888888, 0.46875, 0.4201388888888889, 0.006944444444444444, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.017361111111111112, 0.21180555555555555, 0.5173611111111112], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_3.gap.json b/pfam_gap_rates/CBM_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41837b0afe237101c17504b27108311c5bcde690
--- /dev/null
+++ b/pfam_gap_rates/CBM_3.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_3", "n_seqs": 247, "length": 103, "gap_rates": [0.4251012145748988, 0.3117408906882591, 0.26720647773279355, 0.24696356275303644, 0.1902834008097166, 0.4493927125506073, 0.21862348178137653, 0.1417004048582996, 0.10121457489878542, 0.23481781376518218, 0.06882591093117409, 0.044534412955465584, 0.032388663967611336, 0.024291497975708502, 0.020242914979757085, 0.012145748987854251, 0.008097165991902834, 0.008097165991902834, 0.008097165991902834, 0.008097165991902834, 0.008097165991902834, 0.008097165991902834, 0.012145748987854251, 0.012145748987854251, 0.008097165991902834, 0.020242914979757085, 0.016194331983805668, 0.6194331983805668, 0.008097165991902834, 0.004048582995951417, 0.004048582995951417, 0.004048582995951417, 0.004048582995951417, 0.004048582995951417, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5951417004048583, 0.6396761133603239, 0.6842105263157895, 0.8218623481781376, 0.8178137651821862, 0.6842105263157895, 0.6275303643724697, 0.5910931174089069, 0.48582995951417, 0.048582995951417005, 0.23481781376518218, 0.1902834008097166, 0.004048582995951417, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008097165991902834, 0.008097165991902834, 0.7975708502024291, 0.8744939271255061, 0.9433198380566802, 0.8623481781376519, 0.7732793522267206, 0.13765182186234817, 0.2145748987854251, 0.8461538461538461, 0.8866396761133604, 0.9392712550607287, 0.9109311740890689, 0.8663967611336032, 0.8097165991902834, 0.03643724696356275, 0.020242914979757085, 0.008097165991902834, 0.012145748987854251, 0.3805668016194332, 0.02834008097165992, 0.020242914979757085, 0.02834008097165992, 0.03643724696356275, 0.05668016194331984, 0.38461538461538464, 0.27125506072874495, 0.3319838056680162, 0.5263157894736842, 0.05668016194331984, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05668016194331984, 0.06072874493927125, 0.06882591093117409, 0.10121457489878542, 0.23481781376518218], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_48.gap.json b/pfam_gap_rates/CBM_48.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5500240180866c7d7b897354ffb7df98187343e9
--- /dev/null
+++ b/pfam_gap_rates/CBM_48.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_48", "n_seqs": 3560, "length": 108, "gap_rates": [0.619943820224719, 0.17247191011235954, 0.11685393258426967, 0.11235955056179775, 0.10168539325842697, 0.09550561797752809, 0.09157303370786517, 0.08567415730337079, 0.0598314606741573, 0.7014044943820225, 0.9382022471910112, 0.7087078651685393, 0.6688202247191011, 0.4997191011235955, 0.03146067415730337, 0.023876404494382022, 0.017134831460674158, 0.015168539325842697, 0.014325842696629213, 0.013202247191011237, 0.013202247191011237, 0.009550561797752809, 0.008707865168539325, 0.007303370786516854, 0.007022471910112359, 0.0064606741573033704, 0.006179775280898876, 0.0050561797752808986, 0.0044943820224719105, 0.0047752808988764045, 0.0050561797752808986, 0.006741573033707865, 0.009550561797752809, 0.01544943820224719, 0.016292134831460674, 0.017696629213483146, 0.7328651685393258, 0.9367977528089888, 0.9474719101123595, 0.8367977528089887, 0.672752808988764, 0.021910112359550562, 0.12556179775280898, 0.08202247191011236, 0.03651685393258427, 0.01348314606741573, 0.007022471910112359, 0.003932584269662922, 0.003089887640449438, 0.003932584269662922, 0.5053370786516854, 0.9176966292134832, 0.8592696629213483, 0.06657303370786517, 0.03146067415730337, 0.0044943820224719105, 0.0033707865168539327, 0.0033707865168539327, 0.0033707865168539327, 0.004213483146067416, 0.0047752808988764045, 0.0044943820224719105, 0.0047752808988764045, 0.0053370786516853935, 0.0053370786516853935, 0.39803370786516856, 0.878370786516854, 0.8876404494382022, 0.9280898876404494, 0.8893258426966292, 0.8856741573033707, 0.8367977528089887, 0.06601123595505617, 0.009831460674157303, 0.009269662921348315, 0.37640449438202245, 0.09943820224719101, 0.5028089887640449, 0.4575842696629214, 0.018258426966292134, 0.017977528089887642, 0.017977528089887642, 0.018258426966292134, 0.018820224719101122, 0.019943820224719102, 0.021910112359550562, 0.027808988764044945, 0.04269662921348315, 0.07219101123595506, 0.6915730337078652, 0.7373595505617978, 0.7061797752808989, 0.6418539325842697, 0.21067415730337077, 0.6898876404494382, 0.7325842696629213, 0.7191011235955056, 0.6348314606741573, 0.12556179775280898, 0.13342696629213482, 0.1196629213483146, 0.11348314606741573, 0.11235955056179775, 0.11432584269662921, 0.11741573033707865, 0.12191011235955056, 0.14831460674157304, 0.27331460674157304], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDC14.gap.json b/pfam_gap_rates/CDC14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3eeb66d5b221cb9daeaee9b3c0e8aee93452cc87
--- /dev/null
+++ b/pfam_gap_rates/CDC14.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CDC24.gap.json b/pfam_gap_rates/CDC24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7de1367617a543929323f6198fa0f206b10b968
--- /dev/null
+++ b/pfam_gap_rates/CDC24.gap.json
@@ -0,0 +1 @@
+{"family": "CDC24", "n_seqs": 144, "length": 99, "gap_rates": [0.0763888888888889, 0.034722222222222224, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.9236111111111112, 0.013888888888888888, 0.0, 0.006944444444444444, 0.0, 0.0, 0.006944444444444444, 0.2986111111111111, 0.1597222222222222, 0.7083333333333334, 0.8125, 0.9027777777777778, 0.9375, 0.8819444444444444, 0.7638888888888888, 0.5555555555555556, 0.020833333333333332, 0.006944444444444444, 0.013888888888888888, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.013888888888888888, 0.020833333333333332, 0.9444444444444444, 0.0625, 0.0625, 0.0625, 0.027777777777777776, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.9166666666666666, 0.013888888888888888, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.013888888888888888, 0.013888888888888888, 0.027777777777777776, 0.034722222222222224, 0.041666666666666664, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.0625, 0.0625, 0.20833333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDC37_C.gap.json b/pfam_gap_rates/CDC37_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6adc6c313c27207a6ca312e67f007a04fc8c151c
--- /dev/null
+++ b/pfam_gap_rates/CDC37_C.gap.json
@@ -0,0 +1 @@
+{"family": "CDC37_C", "n_seqs": 243, "length": 106, "gap_rates": [0.9218106995884774, 0.7119341563786008, 0.6790123456790124, 0.6831275720164609, 0.6790123456790124, 0.6460905349794238, 0.39094650205761317, 0.2839506172839506, 0.26337448559670784, 0.2551440329218107, 0.5432098765432098, 0.49382716049382713, 0.45267489711934156, 0.411522633744856, 0.3991769547325103, 0.02880658436213992, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.012345679012345678, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00411522633744856, 0.00411522633744856, 0.00823045267489712, 0.00411522633744856, 0.00411522633744856, 0.00411522633744856, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.012345679012345678, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.024691358024691357, 0.024691358024691357, 0.02880658436213992, 0.02880658436213992, 0.3497942386831276, 0.2674897119341564, 0.2880658436213992, 0.2962962962962963, 0.29218106995884774, 0.2962962962962963, 0.31275720164609055, 0.26337448559670784, 0.20987654320987653, 0.205761316872428, 0.20164609053497942, 0.831275720164609, 0.8600823045267489, 0.9135802469135802, 0.934156378600823, 0.9465020576131687, 0.9176954732510288, 0.8888888888888888, 0.8518518518518519, 0.8065843621399177, 0.2962962962962963, 0.23045267489711935, 0.24279835390946503, 0.25925925925925924, 0.30864197530864196, 0.345679012345679, 0.39094650205761317, 0.3950617283950617, 0.40329218106995884, 0.4279835390946502, 0.4567901234567901, 0.46502057613168724, 0.4773662551440329, 0.5020576131687243, 0.522633744855967, 0.6090534979423868, 0.6337448559670782, 0.6872427983539094, 0.7037037037037037, 0.757201646090535, 0.8106995884773662, 0.8559670781893004, 0.9053497942386831], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CGI-121.gap.json b/pfam_gap_rates/CGI-121.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7565f74c8335cf9800b538c2e7a7dcf4fa47a164
--- /dev/null
+++ b/pfam_gap_rates/CGI-121.gap.json
@@ -0,0 +1 @@
+{"family": "CGI-121", "n_seqs": 340, "length": 197, "gap_rates": [0.3058823529411765, 0.2852941176470588, 0.2676470588235294, 0.25882352941176473, 0.25882352941176473, 0.25588235294117645, 0.2529411764705882, 0.2411764705882353, 0.2323529411764706, 0.22941176470588234, 0.22647058823529412, 0.22058823529411764, 0.21764705882352942, 0.21764705882352942, 0.27058823529411763, 0.27058823529411763, 0.22058823529411764, 0.8676470588235294, 0.8705882352941177, 0.8735294117647059, 0.8823529411764706, 0.9088235294117647, 0.9176470588235294, 0.8941176470588236, 0.8735294117647059, 0.8735294117647059, 0.8705882352941177, 0.8647058823529412, 0.20588235294117646, 0.2911764705882353, 0.27941176470588236, 0.18529411764705883, 0.27058823529411763, 0.20294117647058824, 0.08529411764705883, 0.07058823529411765, 0.07058823529411765, 0.06764705882352941, 0.06764705882352941, 0.06764705882352941, 0.061764705882352944, 0.061764705882352944, 0.061764705882352944, 0.06470588235294118, 0.05588235294117647, 0.052941176470588235, 0.047058823529411764, 0.04411764705882353, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.04411764705882353, 0.04411764705882353, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.04411764705882353, 0.061764705882352944, 0.061764705882352944, 0.05588235294117647, 0.047058823529411764, 0.04411764705882353, 0.04411764705882353, 0.041176470588235294, 0.041176470588235294, 0.047058823529411764, 0.047058823529411764, 0.04411764705882353, 0.04411764705882353, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.04411764705882353, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.04411764705882353, 0.03235294117647059, 0.03529411764705882, 0.04411764705882353, 0.047058823529411764, 0.052941176470588235, 0.05, 0.11176470588235295, 0.05, 0.05, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.07941176470588235, 0.06764705882352941, 0.052941176470588235, 0.052941176470588235, 0.058823529411764705, 0.05588235294117647, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.07352941176470588, 0.7794117647058824, 0.8235294117647058, 0.8764705882352941, 0.9382352941176471, 0.9235294117647059, 0.861764705882353, 0.8088235294117647, 0.7411764705882353, 0.6617647058823529, 0.5970588235294118, 0.5088235294117647, 0.32941176470588235, 0.12941176470588237, 0.11176470588235295, 0.10294117647058823, 0.09705882352941177, 0.09411764705882353, 0.09705882352941177, 0.09705882352941177, 0.09705882352941177, 0.09705882352941177, 0.09411764705882353, 0.09117647058823529, 0.09117647058823529, 0.10882352941176471, 0.11470588235294117, 0.11176470588235295, 0.11470588235294117, 0.1264705882352941, 0.11176470588235295, 0.10294117647058823, 0.1, 0.7, 0.65, 0.15588235294117647, 0.15, 0.15, 0.17352941176470588, 0.11470588235294117, 0.10294117647058823, 0.09705882352941177, 0.09705882352941177, 0.09705882352941177, 0.09705882352941177, 0.09705882352941177, 0.1, 0.11470588235294117, 0.15294117647058825, 0.15588235294117647, 0.15588235294117647, 0.15588235294117647, 0.5647058823529412, 0.7088235294117647, 0.7294117647058823, 0.8117647058823529, 0.9088235294117647, 0.9235294117647059, 0.9441176470588235, 0.95, 0.9470588235294117, 0.9323529411764706, 0.9176470588235294, 0.8794117647058823, 0.7735294117647059, 0.7176470588235294, 0.7029411764705882, 0.5911764705882353, 0.5294117647058824, 0.5617647058823529, 0.4294117647058823, 0.36176470588235293, 0.2823529411764706, 0.22941176470588234, 0.22058823529411764, 0.21470588235294116, 0.21470588235294116, 0.21176470588235294, 0.8117647058823529, 0.22058823529411764, 0.22058823529411764, 0.22058823529411764, 0.22058823529411764, 0.22058823529411764, 0.2235294117647059, 0.22647058823529412, 0.22941176470588234, 0.23823529411764705, 0.25882352941176473, 0.29411764705882354, 0.38823529411764707], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHASE4.gap.json b/pfam_gap_rates/CHASE4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45b36991e5493c0fd33af3e60130981a2751080e
--- /dev/null
+++ b/pfam_gap_rates/CHASE4.gap.json
@@ -0,0 +1 @@
+{"family": "CHASE4", "n_seqs": 276, "length": 208, "gap_rates": [0.6847826086956522, 0.32971014492753625, 0.2644927536231884, 0.21739130434782608, 0.18478260869565216, 0.15942028985507245, 0.12681159420289856, 0.10869565217391304, 0.09782608695652174, 0.08333333333333333, 0.07608695652173914, 0.07246376811594203, 0.06521739130434782, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.05434782608695652, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.043478260869565216, 0.043478260869565216, 0.7898550724637681, 0.043478260869565216, 0.03985507246376811, 0.03985507246376811, 0.036231884057971016, 0.9202898550724637, 0.9021739130434783, 0.03985507246376811, 0.036231884057971016, 0.03985507246376811, 0.03985507246376811, 0.043478260869565216, 0.036231884057971016, 0.036231884057971016, 0.03260869565217391, 0.06159420289855073, 0.025362318840579712, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.014492753623188406, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.025362318840579712, 0.3695652173913043, 0.42391304347826086, 0.8188405797101449, 0.8768115942028986, 0.9311594202898551, 0.9384057971014492, 0.9021739130434783, 0.855072463768116, 0.7898550724637681, 0.39492753623188404, 0.34782608695652173, 0.09782608695652174, 0.358695652173913, 0.3804347826086957, 0.36594202898550726, 0.35144927536231885, 0.028985507246376812, 0.03985507246376811, 0.04710144927536232, 0.07608695652173914, 0.12318840579710146, 0.2210144927536232, 0.3007246376811594, 0.427536231884058, 0.6413043478260869, 0.7463768115942029, 0.8369565217391305, 0.8876811594202898, 0.9166666666666666, 0.9311594202898551, 0.9492753623188406, 0.9202898550724637, 0.9094202898550725, 0.8586956521739131, 0.8043478260869565, 0.6847826086956522, 0.48188405797101447, 0.3442028985507246, 0.2572463768115942, 0.17028985507246377, 0.09057971014492754, 0.05434782608695652, 0.03985507246376811, 0.03985507246376811, 0.028985507246376812, 0.6811594202898551, 0.6739130434782609, 0.6739130434782609, 0.6557971014492754, 0.6521739130434783, 0.6521739130434783, 0.6521739130434783, 0.6304347826086957, 0.018115942028985508, 0.2898550724637681, 0.32608695652173914, 0.36594202898550726, 0.42391304347826086, 0.6159420289855072, 0.7608695652173914, 0.8369565217391305, 0.8731884057971014, 0.9021739130434783, 0.9420289855072463, 0.927536231884058, 0.8840579710144928, 0.8659420289855072, 0.8043478260869565, 0.6884057971014492, 0.5434782608695652, 0.38768115942028986, 0.3333333333333333, 0.30434782608695654, 0.286231884057971, 0.021739130434782608, 0.855072463768116, 0.5289855072463768, 0.014492753623188406, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.018115942028985508, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.9239130434782609, 0.7862318840579711, 0.050724637681159424, 0.03985507246376811, 0.057971014492753624, 0.036231884057971016, 0.036231884057971016, 0.021739130434782608, 0.9492753623188406, 0.021739130434782608, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.014492753623188406, 0.7934782608695652, 0.9347826086956522, 0.8152173913043478, 0.7862318840579711, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.018115942028985508, 0.021739130434782608, 0.025362318840579712, 0.025362318840579712, 0.028985507246376812, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424, 0.05434782608695652, 0.057971014492753624, 0.06521739130434782, 0.07246376811594203, 0.8043478260869565, 0.08333333333333333, 0.09782608695652174, 0.11956521739130435, 0.13043478260869565, 0.15217391304347827, 0.18840579710144928, 0.2427536231884058, 0.26811594202898553, 0.3079710144927536, 0.41304347826086957, 0.9021739130434783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHD5.gap.json b/pfam_gap_rates/CHD5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..97c1710ac35ef31e970182dc6b3c01d930e481ab
--- /dev/null
+++ b/pfam_gap_rates/CHD5.gap.json
@@ -0,0 +1 @@
+{"family": "CHD5", "n_seqs": 229, "length": 166, "gap_rates": [0.8253275109170306, 0.4890829694323144, 0.42358078602620086, 0.3930131004366812, 0.3624454148471616, 0.34497816593886466, 0.32751091703056767, 0.314410480349345, 0.29694323144104806, 0.29694323144104806, 0.2838427947598253, 0.2663755458515284, 0.26200873362445415, 0.2663755458515284, 0.25327510917030566, 0.24890829694323144, 0.24890829694323144, 0.2445414847161572, 0.24017467248908297, 0.2314410480349345, 0.22707423580786026, 0.2052401746724891, 0.22270742358078602, 0.2314410480349345, 0.27074235807860264, 0.3056768558951965, 0.31004366812227074, 0.314410480349345, 0.3318777292576419, 0.3624454148471616, 0.3318777292576419, 0.7161572052401747, 0.6855895196506551, 0.31004366812227074, 0.26200873362445415, 0.23580786026200873, 0.15283842794759825, 0.09606986899563319, 0.09170305676855896, 0.09170305676855896, 0.039301310043668124, 0.034934497816593885, 0.03056768558951965, 0.026200873362445413, 0.026200873362445413, 0.017467248908296942, 0.017467248908296942, 0.017467248908296942, 0.017467248908296942, 0.017467248908296942, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.013100436681222707, 0.013100436681222707, 0.017467248908296942, 0.017467248908296942, 0.021834061135371178, 0.021834061135371178, 0.034934497816593885, 0.034934497816593885, 0.034934497816593885, 0.043668122270742356, 0.048034934497816595, 0.039301310043668124, 0.043668122270742356, 0.043668122270742356, 0.048034934497816595, 0.043668122270742356, 0.034934497816593885, 0.03056768558951965, 0.039301310043668124, 0.043668122270742356, 0.043668122270742356, 0.048034934497816595, 0.048034934497816595, 0.05240174672489083, 0.056768558951965066, 0.06550218340611354, 0.06986899563318777, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.0611353711790393, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.06550218340611354, 0.0611353711790393, 0.0611353711790393, 0.0611353711790393, 0.0611353711790393, 0.0611353711790393, 0.06550218340611354, 0.0611353711790393, 0.0611353711790393, 0.0611353711790393, 0.0611353711790393, 0.0611353711790393, 0.06550218340611354, 0.7074235807860262, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.5851528384279476, 0.34497816593886466, 0.08296943231441048, 0.08296943231441048, 0.08296943231441048, 0.09170305676855896, 0.09606986899563319, 0.1091703056768559, 0.1222707423580786, 0.14410480349344978, 0.1615720524017467, 0.1615720524017467, 0.1703056768558952, 0.8777292576419214, 0.9126637554585153, 0.9039301310043668, 0.8777292576419214, 0.17467248908296942, 0.17903930131004367, 0.18777292576419213, 0.19213973799126638, 0.19213973799126638, 0.20087336244541484, 0.20087336244541484, 0.20087336244541484, 0.2314410480349345, 0.27074235807860264, 0.33624454148471616, 0.5458515283842795], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHU_C.gap.json b/pfam_gap_rates/CHU_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f33e14c737b4b3b165521d4ca386bff63ccefc1
--- /dev/null
+++ b/pfam_gap_rates/CHU_C.gap.json
@@ -0,0 +1 @@
+{"family": "CHU_C", "n_seqs": 1210, "length": 106, "gap_rates": [0.8826446280991735, 0.343801652892562, 0.1322314049586777, 0.07603305785123966, 0.05206611570247934, 0.0371900826446281, 0.03636363636363636, 0.03553719008264463, 0.03471074380165289, 0.03305785123966942, 0.045454545454545456, 0.03801652892561983, 0.02975206611570248, 0.026446280991735537, 0.026446280991735537, 0.024793388429752067, 0.019008264462809916, 0.015702479338842976, 0.01652892561983471, 0.01487603305785124, 0.01487603305785124, 0.05289256198347107, 0.928099173553719, 0.8553719008264463, 0.033884297520661154, 0.22231404958677686, 0.9380165289256198, 0.05785123966942149, 0.03471074380165289, 0.009917355371900827, 0.009917355371900827, 0.9347107438016529, 0.003305785123966942, 0.0024793388429752068, 0.001652892561983471, 0.0008264462809917355, 0.0008264462809917355, 0.0008264462809917355, 0.0008264462809917355, 0.0008264462809917355, 0.0, 0.0, 0.0, 0.0008264462809917355, 0.0, 0.00743801652892562, 0.001652892561983471, 0.0, 0.001652892561983471, 0.00743801652892562, 0.00743801652892562, 0.009917355371900827, 0.7479338842975206, 0.8487603305785124, 0.9388429752066115, 0.871900826446281, 0.7735537190082644, 0.7, 0.019834710743801654, 0.001652892561983471, 0.001652892561983471, 0.0024793388429752068, 0.001652892561983471, 0.005785123966942148, 0.09090909090909091, 0.09256198347107437, 0.11652892561983472, 0.6950413223140496, 0.8785123966942149, 0.8876033057851239, 0.9371900826446281, 0.9057851239669421, 0.8826446280991735, 0.8289256198347107, 0.11487603305785124, 0.030578512396694214, 0.023140495867768594, 0.0049586776859504135, 0.003305785123966942, 0.003305785123966942, 0.003305785123966942, 0.003305785123966942, 0.004132231404958678, 0.006611570247933884, 0.006611570247933884, 0.00909090909090909, 0.014049586776859505, 0.021487603305785124, 0.6619834710743802, 0.9082644628099174, 0.5685950413223141, 0.2727272727272727, 0.21239669421487603, 0.17768595041322313, 0.18677685950413223, 0.22479338842975208, 0.2512396694214876, 0.2702479338842975, 0.9330578512396694, 0.30165289256198347, 0.31322314049586775, 0.328099173553719, 0.3677685950413223, 0.4033057851239669, 0.4925619834710744, 0.6206611570247934], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHZ.gap.json b/pfam_gap_rates/CHZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f66f290827ea3c0a8dee4666dce479da439ee1a7
--- /dev/null
+++ b/pfam_gap_rates/CHZ.gap.json
@@ -0,0 +1 @@
+{"family": "CHZ", "n_seqs": 165, "length": 34, "gap_rates": [0.44242424242424244, 0.20606060606060606, 0.10303030303030303, 0.048484848484848485, 0.024242424242424242, 0.03636363636363636, 0.012121212121212121, 0.012121212121212121, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.15757575757575756, 0.2545454545454545, 0.0, 0.0, 0.0, 0.18181818181818182, 0.01818181818181818, 0.024242424242424242, 0.030303030303030304, 0.03636363636363636, 0.07272727272727272, 0.07878787878787878, 0.08484848484848485, 0.09696969696969697, 0.15151515151515152, 0.21212121212121213, 0.23030303030303031, 0.3151515151515151, 0.6060606060606061], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CH_2.gap.json b/pfam_gap_rates/CH_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed43433e96222950ae1a395c51bc2d916533461f
--- /dev/null
+++ b/pfam_gap_rates/CH_2.gap.json
@@ -0,0 +1 @@
+{"family": "CH_2", "n_seqs": 301, "length": 100, "gap_rates": [0.23255813953488372, 0.1461794019933555, 0.10963455149501661, 0.10631229235880399, 0.09634551495016612, 0.08970099667774087, 0.08637873754152824, 0.8305647840531561, 0.08305647840531562, 0.08305647840531562, 0.08305647840531562, 0.07973421926910298, 0.08970099667774087, 0.08305647840531562, 0.07308970099667775, 0.06976744186046512, 0.9169435215946844, 0.9102990033222591, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06312292358803986, 0.059800664451827246, 0.059800664451827246, 0.05647840531561462, 0.05647840531561462, 0.05647840531561462, 0.046511627906976744, 0.04318936877076412, 0.036544850498338874, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.029900332225913623, 0.03322259136212625, 0.029900332225913623, 0.026578073089700997, 0.25249169435215946, 0.026578073089700997, 0.026578073089700997, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.013289036544850499, 0.013289036544850499, 0.009966777408637873, 0.009966777408637873, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.5116279069767442, 0.023255813953488372, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.029900332225913623, 0.029900332225913623, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.029900332225913623, 0.029900332225913623, 0.03322259136212625, 0.036544850498338874, 0.03986710963455149, 0.03986710963455149, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.04318936877076412, 0.04318936877076412, 0.04983388704318937, 0.05647840531561462, 0.059800664451827246, 0.06312292358803986, 0.07308970099667775, 0.07308970099667775, 0.07308970099667775, 0.07641196013289037, 0.07641196013289037, 0.07641196013289037, 0.08305647840531562, 0.09634551495016612, 0.12624584717607973, 0.3787375415282392, 0.8438538205980066], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CLASP_N.gap.json b/pfam_gap_rates/CLASP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a02c460925f3c9cd45c99f3af1dec9d4dbfea97
--- /dev/null
+++ b/pfam_gap_rates/CLASP_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CLIP.gap.json b/pfam_gap_rates/CLIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dca1e20ef9fe27101b4ffae349785c878b616567
--- /dev/null
+++ b/pfam_gap_rates/CLIP.gap.json
@@ -0,0 +1 @@
+{"family": "CLIP", "n_seqs": 218, "length": 62, "gap_rates": [0.14220183486238533, 0.14220183486238533, 0.13302752293577982, 0.13302752293577982, 0.11926605504587157, 0.9495412844036697, 0.11467889908256881, 0.0779816513761468, 0.07339449541284404, 0.07339449541284404, 0.027522935779816515, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.0045871559633027525, 0.0045871559633027525, 0.009174311926605505, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.7798165137614679, 0.009174311926605505, 0.009174311926605505, 0.0045871559633027525, 0.09174311926605505, 0.12385321100917432, 0.21559633027522937, 0.926605504587156, 0.8899082568807339, 0.10091743119266056, 0.08256880733944955, 0.05045871559633028, 0.04128440366972477, 0.03669724770642202, 0.013761467889908258, 0.0045871559633027525, 0.0, 0.0045871559633027525, 0.0045871559633027525, 0.0, 0.9311926605504587, 0.9311926605504587, 0.0, 0.0, 0.0, 0.926605504587156, 0.7752293577981652, 0.6651376146788991, 0.10091743119266056, 0.0963302752293578, 0.06880733944954129, 0.022935779816513763, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.01834862385321101, 0.027522935779816515], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CLTH.gap.json b/pfam_gap_rates/CLTH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2999b72a903d510ad8d7f7f4ce1db1355fc0699b
--- /dev/null
+++ b/pfam_gap_rates/CLTH.gap.json
@@ -0,0 +1 @@
+{"family": "CLTH", "n_seqs": 1329, "length": 321, "gap_rates": [0.8164033107599699, 0.4108352144469526, 0.27915726109857036, 0.19714070729872085, 0.14221218961625282, 0.11211437170805116, 0.10233258088788563, 0.08878856282919488, 0.08126410835214447, 0.07223476297968397, 0.0654627539503386, 0.06170052671181339, 0.9473288186606471, 0.05718585402558315, 0.056433408577878104, 0.05568096313017306, 0.05492851768246802, 0.0526711813393529, 0.0526711813393529, 0.05191873589164785, 0.05191873589164785, 0.04966139954853273, 0.04740406320541761, 0.04589917231000752, 0.04439428141459744, 0.04439428141459744, 0.04439428141459744, 0.04439428141459744, 0.04815650865312265, 0.04890895410082769, 0.046651617757712566, 0.045146726862302484, 0.05191873589164785, 0.057938299473288185, 0.056433408577878104, 0.07900677200902935, 0.9405568096313017, 0.9495861550037622, 0.945823927765237, 0.9300225733634312, 0.04288939051918736, 0.0346124905944319, 0.03160270880361174, 0.029345372460496615, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CM_1.gap.json b/pfam_gap_rates/CM_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b7b06d97bfdd82c674fc1099c8e7518a04cbfdb
--- /dev/null
+++ b/pfam_gap_rates/CM_1.gap.json
@@ -0,0 +1 @@
+{"family": "CM_1", "n_seqs": 337, "length": 117, "gap_rates": [0.2997032640949555, 0.08011869436201781, 0.04451038575667656, 0.03857566765578635, 0.03857566765578635, 0.03857566765578635, 0.03560830860534125, 0.03560830860534125, 0.03560830860534125, 0.03560830860534125, 0.0712166172106825, 0.02967359050445104, 0.02967359050445104, 0.032640949554896145, 0.02967359050445104, 0.02967359050445104, 0.02967359050445104, 0.02967359050445104, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.020771513353115726, 0.020771513353115726, 0.020771513353115726, 0.020771513353115726, 0.020771513353115726, 0.020771513353115726, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.02373887240356083, 0.02373887240356083, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.011869436201780416, 0.011869436201780416, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.4421364985163205, 0.02373887240356083, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.020771513353115726, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.01483679525222552, 0.01483679525222552, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.008902077151335312, 0.01483679525222552, 0.020771513353115726, 0.17507418397626112, 0.05341246290801187, 0.04154302670623145, 0.026706231454005934, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.032640949554896145, 0.10385756676557864], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CN_hydrolase.gap.json b/pfam_gap_rates/CN_hydrolase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2dff594a4630035782089eeafac80d88500fa45
--- /dev/null
+++ b/pfam_gap_rates/CN_hydrolase.gap.json
@@ -0,0 +1 @@
+{"family": "CN_hydrolase", "n_seqs": 5000, "length": 353, "gap_rates": [0.531, 0.3386, 0.2984, 0.2646, 0.2432, 0.232, 0.2284, 0.226, 0.2212, 0.8802, 0.9254, 0.9458, 0.8946, 0.8376, 0.3702, 0.2924, 0.1904, 0.1784, 0.1652, 0.1558, 0.1442, 0.1374, 0.1316, 0.1252, 0.122, 0.1182, 0.1158, 0.112, 0.1094, 0.1072, 0.1056, 0.1016, 0.156, 0.1278, 0.1232, 0.0932, 0.9258, 0.8572, 0.0772, 0.0758, 0.0704, 0.0674, 0.066, 0.065, 0.0644, 0.0644, 0.064, 0.064, 0.064, 0.0638, 0.0652, 0.118, 0.1098, 0.636, 0.7608, 0.8578, 0.8824, 0.9008, 0.9164, 0.9422, 0.9492, 0.9468, 0.919, 0.9088, 0.8906, 0.8712, 0.7978, 0.6756, 0.599, 0.3086, 0.227, 0.18, 0.1358, 0.1306, 0.1376, 0.1276, 0.1724, 0.2552, 0.238, 0.1984, 0.7858, 0.8706, 0.932, 0.9454, 0.9202, 0.8368, 0.608, 0.2518, 0.259, 0.221, 0.1956, 0.0918, 0.0696, 0.0632, 0.0548, 0.0532, 0.0508, 0.0514, 0.0526, 0.053, 0.0528, 0.0566, 0.0642, 0.0648, 0.057, 0.0516, 0.05, 0.0478, 0.047, 0.0452, 0.0454, 0.94, 0.0452, 0.0486, 0.0474, 0.0506, 0.429, 0.5818, 0.8462, 0.9112, 0.9334, 0.9476, 0.9252, 0.8854, 0.7344, 0.0852, 0.053, 0.0472, 0.0456, 0.0534, 0.8268, 0.7758, 0.0484, 0.0412, 0.04, 0.0384, 0.039, 0.0402, 0.0398, 0.144, 0.0562, 0.0524, 0.0438, 0.0454, 0.1762, 0.9358, 0.9432, 0.9248, 0.1046, 0.044, 0.0394, 0.0368, 0.0366, 0.0362, 0.0364, 0.0366, 0.2676, 0.4404, 0.6516, 0.7126, 0.6658, 0.551, 0.3928, 0.3612, 0.3454, 0.1648, 0.114, 0.0674, 0.0566, 0.0708, 0.0642, 0.0622, 0.0574, 0.057, 0.0556, 0.0516, 0.7278, 0.7572, 0.769, 0.7786, 0.8094, 0.875, 0.9302, 0.9422, 0.9454, 0.9386, 0.8958, 0.844, 0.7882, 0.774, 0.765, 0.7522, 0.7138, 0.0566, 0.0972, 0.234, 0.881, 0.6286, 0.1968, 0.1112, 0.1006, 0.0954, 0.0726, 0.067, 0.066, 0.0672, 0.0472, 0.867, 0.91, 0.9458, 0.9344, 0.8984, 0.7804, 0.047, 0.0462, 0.0466, 0.047, 0.0492, 0.0474, 0.0478, 0.0486, 0.0496, 0.052, 0.0542, 0.0548, 0.0568, 0.0588, 0.0602, 0.061, 0.0616, 0.091, 0.8496, 0.1044, 0.0782, 0.0702, 0.0686, 0.069, 0.0698, 0.0704, 0.0696, 0.07, 0.0728, 0.0716, 0.7714, 0.8508, 0.9016, 0.9492, 0.9326, 0.8928, 0.7918, 0.664, 0.3464, 0.391, 0.589, 0.5182, 0.3536, 0.2802, 0.2038, 0.177, 0.162, 0.0956, 0.0946, 0.097, 0.0956, 0.0924, 0.092, 0.1572, 0.0986, 0.0988, 0.094, 0.0926, 0.0908, 0.0898, 0.0894, 0.0886, 0.0892, 0.0886, 0.0896, 0.0896, 0.0904, 0.0902, 0.1428, 0.0978, 0.0934, 0.0914, 0.092, 0.0942, 0.095, 0.0964, 0.0998, 0.7884, 0.8502, 0.8816, 0.8926, 0.9118, 0.932, 0.9462, 0.9398, 0.9186, 0.91, 0.8912, 0.8616, 0.8288, 0.7766, 0.7522, 0.5606, 0.2862, 0.2826, 0.279, 0.277, 0.2478, 0.2458, 0.2446, 0.2458, 0.2446, 0.1224, 0.1178, 0.1158, 0.121, 0.127, 0.126, 0.1228, 0.1248, 0.1282, 0.131, 0.134, 0.151, 0.148, 0.151, 0.1552, 0.1608, 0.1648, 0.1696, 0.3296, 0.254, 0.9174, 0.9092, 0.1954, 0.2, 0.2078, 0.2158, 0.224, 0.2372, 0.2592, 0.3238, 0.3384, 0.3782, 0.4148, 0.4642, 0.5214, 0.584, 0.6266, 0.9028], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COLFI.gap.json b/pfam_gap_rates/COLFI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd91f5f0c995611c3362e2908b10e040ec0b03c1
--- /dev/null
+++ b/pfam_gap_rates/COLFI.gap.json
@@ -0,0 +1 @@
+{"family": "COLFI", "n_seqs": 464, "length": 240, "gap_rates": [0.728448275862069, 0.5495689655172413, 0.4870689655172414, 0.43103448275862066, 0.41810344827586204, 0.41163793103448276, 0.40086206896551724, 0.3922413793103448, 0.3900862068965517, 0.3857758620689655, 0.3771551724137931, 0.3728448275862069, 0.36637931034482757, 0.3620689655172414, 0.3297413793103448, 0.3103448275862069, 0.3081896551724138, 0.30603448275862066, 0.2974137931034483, 0.2823275862068966, 0.27155172413793105, 0.2607758620689655, 0.25646551724137934, 0.9439655172413793, 0.25, 0.2349137931034483, 0.22844827586206898, 0.22413793103448276, 0.21120689655172414, 0.21120689655172414, 0.19181034482758622, 0.1896551724137931, 0.1896551724137931, 0.1875, 0.1875, 0.1875, 0.1875, 0.1853448275862069, 0.1853448275862069, 0.1875, 0.1853448275862069, 0.1788793103448276, 0.17672413793103448, 0.17672413793103448, 0.1724137931034483, 0.17456896551724138, 0.17456896551724138, 0.17456896551724138, 0.17672413793103448, 0.17456896551724138, 0.1788793103448276, 0.1788793103448276, 0.1788793103448276, 0.9245689655172413, 0.1810344827586207, 0.18318965517241378, 0.1810344827586207, 0.18318965517241378, 0.18318965517241378, 0.18318965517241378, 0.1788793103448276, 0.17456896551724138, 0.17456896551724138, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.17672413793103448, 0.17456896551724138, 0.17025862068965517, 0.6271551724137931, 0.17025862068965517, 0.1788793103448276, 0.1788793103448276, 0.18318965517241378, 0.18318965517241378, 0.19181034482758622, 0.19181034482758622, 0.1961206896551724, 0.1961206896551724, 0.22844827586206898, 0.24568965517241378, 0.2801724137931034, 0.30603448275862066, 0.8060344827586207, 0.33620689655172414, 0.33189655172413796, 0.33189655172413796, 0.33189655172413796, 0.33405172413793105, 0.33405172413793105, 0.33836206896551724, 0.33620689655172414, 0.34051724137931033, 0.8038793103448276, 0.9310344827586207, 0.7564655172413793, 0.6379310344827587, 0.42887931034482757, 0.39655172413793105, 0.3857758620689655, 0.3448275862068966, 0.3426724137931034, 0.3448275862068966, 0.34698275862068967, 0.3642241379310345, 0.40301724137931033, 0.42887931034482757, 0.4051724137931034, 0.41163793103448276, 0.3900862068965517, 0.625, 0.35344827586206895, 0.34913793103448276, 0.3448275862068966, 0.8275862068965517, 0.6573275862068966, 0.6422413793103449, 0.6379310344827587, 0.6271551724137931, 0.6228448275862069, 0.5581896551724138, 0.3168103448275862, 0.28663793103448276, 0.25646551724137934, 0.25, 0.2478448275862069, 0.2478448275862069, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2435344827586207, 0.2435344827586207, 0.2435344827586207, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.23922413793103448, 0.2413793103448276, 0.23922413793103448, 0.23922413793103448, 0.2629310344827586, 0.29310344827586204, 0.36853448275862066, 0.3857758620689655, 0.3857758620689655, 0.3857758620689655, 0.39655172413793105, 0.3900862068965517, 0.3922413793103448, 0.3922413793103448, 0.3879310344827586, 0.3642241379310345, 0.3448275862068966, 0.3297413793103448, 0.3146551724137931, 0.3103448275862069, 0.2974137931034483, 0.2995689655172414, 0.2974137931034483, 0.2974137931034483, 0.2974137931034483, 0.2974137931034483, 0.2995689655172414, 0.3017241379310345, 0.30387931034482757, 0.30603448275862066, 0.3081896551724138, 0.3081896551724138, 0.3125, 0.3168103448275862, 0.31896551724137934, 0.44612068965517243, 0.6012931034482759, 0.5301724137931034, 0.39655172413793105, 0.3297413793103448, 0.31896551724137934, 0.31896551724137934, 0.3146551724137931, 0.3081896551724138, 0.3081896551724138, 0.3081896551724138, 0.3081896551724138, 0.30603448275862066, 0.30603448275862066, 0.3017241379310345, 0.3146551724137931, 0.3125, 0.3081896551724138, 0.3168103448275862, 0.3232758620689655, 0.5668103448275862, 0.35129310344827586, 0.33189655172413796, 0.3168103448275862, 0.31896551724137934, 0.32112068965517243, 0.3168103448275862, 0.3168103448275862, 0.3254310344827586, 0.31896551724137934, 0.3426724137931034, 0.33189655172413796, 0.3254310344827586, 0.3168103448275862, 0.3146551724137931, 0.3146551724137931, 0.3146551724137931, 0.3146551724137931, 0.3146551724137931, 0.3146551724137931, 0.3146551724137931, 0.3146551724137931, 0.3168103448275862, 0.3275862068965517, 0.3426724137931034, 0.3426724137931034, 0.33620689655172414, 0.3297413793103448, 0.33189655172413796, 0.3254310344827586, 0.3275862068965517, 0.3275862068965517, 0.3275862068965517, 0.32112068965517243, 0.32112068965517243, 0.3232758620689655, 0.3297413793103448, 0.33189655172413796, 0.33836206896551724, 0.34698275862068967, 0.35129310344827586, 0.35560344827586204], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COP23.gap.json b/pfam_gap_rates/COP23.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef80a5c18fb61f78bd2559d7b8eea8c2032181ce
--- /dev/null
+++ b/pfam_gap_rates/COP23.gap.json
@@ -0,0 +1 @@
+{"family": "COP23", "n_seqs": 148, "length": 191, "gap_rates": [0.2702702702702703, 0.10135135135135136, 0.08783783783783784, 0.07432432432432433, 0.07432432432432433, 0.8581081081081081, 0.9256756756756757, 0.9054054054054054, 0.8378378378378378, 0.777027027027027, 0.6554054054054054, 0.08108108108108109, 0.08108108108108109, 0.07432432432432433, 0.060810810810810814, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.06756756756756757, 0.033783783783783786, 0.04054054054054054, 0.8716216216216216, 0.6756756756756757, 0.02027027027027027, 0.013513513513513514, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.02027027027027027, 0.9459459459459459, 0.05405405405405406, 0.9459459459459459, 0.0472972972972973, 0.08108108108108109, 0.19594594594594594, 0.10135135135135136, 0.08783783783783784, 0.04054054054054054, 0.02027027027027027, 0.013513513513513514, 0.006756756756756757, 0.006756756756756757, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006756756756756757, 0.006756756756756757, 0.7364864864864865, 0.6891891891891891, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.013513513513513514, 0.04054054054054054, 0.013513513513513514, 0.013513513513513514, 0.8108108108108109, 0.7837837837837838, 0.22297297297297297, 0.08108108108108109, 0.08108108108108109, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.33783783783783783, 0.06756756756756757, 0.060810810810810814, 0.060810810810810814, 0.08783783783783784, 0.02027027027027027, 0.6148648648648649, 0.02027027027027027, 0.013513513513513514, 0.4527027027027027, 0.4527027027027027, 0.27702702702702703, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.013513513513513514, 0.831081081081081, 0.8175675675675675, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.033783783783783786, 0.04054054054054054, 0.05405405405405406, 0.05405405405405406, 0.06756756756756757, 0.06756756756756757, 0.07432432432432433, 0.7432432432432432, 0.918918918918919, 0.722972972972973, 0.25675675675675674, 0.8040540540540541, 0.25, 0.2702702702702703, 0.36486486486486486, 0.16216216216216217, 0.16216216216216217, 0.16216216216216217, 0.16891891891891891, 0.1891891891891892, 0.20270270270270271, 0.20270270270270271, 0.20270270270270271, 0.20945945945945946, 0.8648648648648649, 0.8716216216216216, 0.8851351351351351, 0.9054054054054054, 0.9121621621621622, 0.9324324324324325, 0.9121621621621622, 0.9121621621621622, 0.8918918918918919, 0.8783783783783784, 0.8716216216216216, 0.8378378378378378, 0.2702702702702703, 0.42567567567567566, 0.6959459459459459, 0.7364864864864865, 0.7432432432432432, 0.7905405405405406, 0.8108108108108109, 0.831081081081081, 0.8581081081081081, 0.8783783783783784, 0.9054054054054054, 0.918918918918919, 0.9256756756756757, 0.9459459459459459, 0.918918918918919, 0.9121621621621622, 0.8918918918918919, 0.8716216216216216, 0.8445945945945946, 0.8175675675675675, 0.8040540540540541, 0.7635135135135135, 0.7364864864864865, 0.7027027027027027, 0.6621621621621622, 0.31756756756756754, 0.31756756756756754, 0.3310810810810811, 0.33783783783783783, 0.3581081081081081, 0.36486486486486486, 0.3783783783783784, 0.3918918918918919, 0.4594594594594595, 0.7972972972972973], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COQ7.gap.json b/pfam_gap_rates/COQ7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9e5d4fda9350f5d2f2f53c587b232e021a68105
--- /dev/null
+++ b/pfam_gap_rates/COQ7.gap.json
@@ -0,0 +1 @@
+{"family": "COQ7", "n_seqs": 568, "length": 185, "gap_rates": [0.49119718309859156, 0.3380281690140845, 0.18309859154929578, 0.09330985915492958, 0.08274647887323944, 0.08274647887323944, 0.08098591549295775, 0.08098591549295775, 0.08098591549295775, 0.08098591549295775, 0.07746478873239436, 0.07394366197183098, 0.0721830985915493, 0.0721830985915493, 0.07042253521126761, 0.06338028169014084, 0.061619718309859156, 0.061619718309859156, 0.061619718309859156, 0.061619718309859156, 0.05985915492957746, 0.05985915492957746, 0.05985915492957746, 0.05457746478873239, 0.051056338028169015, 0.39436619718309857, 0.5440140845070423, 0.12323943661971831, 0.058098591549295774, 0.06690140845070422, 0.06338028169014084, 0.07394366197183098, 0.272887323943662, 0.1742957746478873, 0.045774647887323945, 0.04753521126760563, 0.035211267605633804, 0.03697183098591549, 0.03169014084507042, 0.022887323943661973, 0.022887323943661973, 0.022887323943661973, 0.022887323943661973, 0.022887323943661973, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.01584507042253521, 0.02464788732394366, 0.035211267605633804, 0.04225352112676056, 0.07570422535211267, 0.07746478873239436, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.04401408450704225, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.045774647887323945, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04753521126760563, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.051056338028169015, 0.0528169014084507, 0.0528169014084507, 0.5017605633802817, 0.5440140845070423, 0.5985915492957746, 0.5686619718309859, 0.7482394366197183, 0.8151408450704225, 0.8169014084507042, 0.8186619718309859, 0.8327464788732394, 0.9471830985915493, 0.9401408450704225, 0.829225352112676, 0.8186619718309859, 0.8169014084507042, 0.8098591549295775, 0.7341549295774648, 0.07570422535211267, 0.06338028169014084, 0.061619718309859156, 0.061619718309859156, 0.061619718309859156, 0.061619718309859156, 0.061619718309859156, 0.061619718309859156, 0.06690140845070422, 0.06690140845070422, 0.06866197183098592, 0.07042253521126761, 0.07042253521126761, 0.06866197183098592, 0.06690140845070422, 0.07042253521126761, 0.0721830985915493, 0.0721830985915493, 0.0721830985915493, 0.07570422535211267, 0.07922535211267606, 0.08450704225352113, 0.0897887323943662, 0.09330985915492958, 0.09330985915492958, 0.09507042253521127, 0.09330985915492958, 0.10035211267605634, 0.09507042253521127, 0.09683098591549295, 0.09859154929577464, 0.6637323943661971, 0.6496478873239436, 0.1056338028169014, 0.11091549295774648, 0.11267605633802817, 0.11267605633802817, 0.11091549295774648, 0.11091549295774648, 0.11267605633802817, 0.11443661971830986, 0.11619718309859155, 0.11619718309859155, 0.11619718309859155, 0.11619718309859155, 0.11795774647887323, 0.11795774647887323, 0.11971830985915492, 0.125, 0.13204225352112675, 0.14964788732394366, 0.1936619718309859, 0.2975352112676056, 0.3890845070422535, 0.4612676056338028, 0.46830985915492956, 0.4841549295774648, 0.5757042253521126], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX14.gap.json b/pfam_gap_rates/COX14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3cd6c2cc22521fd921add3ae7869e553f76fe2a
--- /dev/null
+++ b/pfam_gap_rates/COX14.gap.json
@@ -0,0 +1 @@
+{"family": "COX14", "n_seqs": 140, "length": 64, "gap_rates": [0.8071428571428572, 0.5428571428571428, 0.39285714285714285, 0.29285714285714287, 0.16428571428571428, 0.1, 0.1, 0.08571428571428572, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.014285714285714285, 0.014285714285714285, 0.0, 0.0, 0.014285714285714285, 0.014285714285714285, 0.02142857142857143, 0.02857142857142857, 0.03571428571428571, 0.02857142857142857, 0.02857142857142857, 0.02142857142857143, 0.02142857142857143, 0.95, 0.95, 0.95, 0.95, 0.9428571428571428, 0.02142857142857143, 0.014285714285714285, 0.014285714285714285, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02857142857142857, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.35714285714285715, 0.3357142857142857, 0.29285714285714287, 0.22142857142857142, 0.15, 0.16428571428571428, 0.21428571428571427, 0.2857142857142857, 0.4, 0.5214285714285715, 0.8785714285714286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CPSF_A.gap.json b/pfam_gap_rates/CPSF_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46d23a3888e38b402e261d577120b9b68cd88e08
--- /dev/null
+++ b/pfam_gap_rates/CPSF_A.gap.json
@@ -0,0 +1 @@
+{"family": "CPSF_A", "n_seqs": 1128, "length": 400, "gap_rates": [0.7668439716312057, 0.424645390070922, 0.3280141843971631, 0.2721631205673759, 0.26595744680851063, 0.26063829787234044, 0.25354609929078015, 0.2526595744680851, 0.250886524822695, 0.25975177304964536, 0.24379432624113476, 0.24113475177304963, 0.23315602836879432, 0.925531914893617, 0.21808510638297873, 0.21453900709219859, 0.9343971631205674, 0.8182624113475178, 0.20833333333333334, 0.20567375886524822, 0.20212765957446807, 0.19946808510638298, 0.19592198581560283, 0.1950354609929078, 0.19326241134751773, 0.19237588652482268, 0.18971631205673758, 0.18882978723404256, 0.18617021276595744, 0.18439716312056736, 0.18351063829787234, 0.18262411347517732, 0.18262411347517732, 0.18173758865248227, 0.18173758865248227, 0.18351063829787234, 0.19326241134751773, 0.19858156028368795, 0.25354609929078015, 0.3058510638297872, 0.4317375886524823, 0.4867021276595745, 0.7047872340425532, 0.9459219858156028, 0.9388297872340425, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CP_ATPgrasp_2.gap.json b/pfam_gap_rates/CP_ATPgrasp_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5862191347ee82c3044d3213d7bca5a1a5ddfd93
--- /dev/null
+++ b/pfam_gap_rates/CP_ATPgrasp_2.gap.json
@@ -0,0 +1 @@
+{"family": "CP_ATPgrasp_2", "n_seqs": 800, "length": 392, "gap_rates": [0.0425, 0.04125, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.03875, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.03625, 0.03625, 0.035, 0.035, 0.035, 0.035, 0.035, 0.03625, 0.03625, 0.03625, 0.0375, 0.03625, 0.03625, 0.03625, 0.035, 0.035, 0.035, 0.035, 0.035, 0.035, 0.035, 0.03875, 0.03625, 0.035, 0.03625, 0.03625, 0.035, 0.035, 0.035, 0.035, 0.035, 0.035, 0.03625, 0.0375, 0.035, 0.03625, 0.03875, 0.0375, 0.0375, 0.065, 0.04, 0.035, 0.03375, 0.03125, 0.0325, 0.0325, 0.0325, 0.0325, 0.0325, 0.0325, 0.0325, 0.0325, 0.0325, 0.03375, 0.0325, 0.0325, 0.0325, 0.04125, 0.0325, 0.0325, 0.0325, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03125, 0.03, 0.03, 0.03, 0.03125, 0.03, 0.03, 0.03125, 0.03125, 0.03, 0.03, 0.02875, 0.02875, 0.03, 0.02875, 0.03, 0.03, 0.03, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.02875, 0.03, 0.03125, 0.83125, 0.05125, 0.12625, 0.135, 0.16875, 0.08375, 0.05875, 0.11125, 0.94125, 0.8425, 0.0275, 0.025, 0.025, 0.02375, 0.02375, 0.025, 0.02375, 0.02375, 0.02375, 0.02375, 0.025, 0.025, 0.025, 0.025, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.02375, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.0275, 0.02625, 0.025, 0.03, 0.04, 0.03625, 0.03, 0.025, 0.0225, 0.0225, 0.0225, 0.0225, 0.0225, 0.0225, 0.0225, 0.0225, 0.0225, 0.0225, 0.02375, 0.02625, 0.03125, 0.0275, 0.03, 0.03375, 0.035, 0.0325, 0.03625, 0.03375, 0.03375, 0.0325, 0.03125, 0.03125, 0.02875, 0.025, 0.05, 0.02375, 0.02625, 0.02125, 0.02, 0.02, 0.02125, 0.02125, 0.02125, 0.02125, 0.02125, 0.02125, 0.02125, 0.02, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.0175, 0.0175, 0.0175, 0.0175, 0.0175, 0.0175, 0.0175, 0.0175, 0.0175, 0.0175, 0.0175, 0.01625, 0.01625, 0.0175, 0.01625, 0.01625, 0.01625, 0.015, 0.015, 0.015, 0.015, 0.015, 0.015, 0.015, 0.015, 0.01375, 0.01375, 0.015, 0.01625, 0.0175, 0.0175, 0.0175, 0.0175, 0.0175, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.02, 0.02, 0.02125, 0.02125, 0.02, 0.02125, 0.02125, 0.02375, 0.07, 0.89875, 0.90875, 0.9225, 0.905, 0.89375, 0.06875, 0.05625, 0.03625, 0.03375, 0.03375, 0.03375, 0.03125, 0.03, 0.02625, 0.02375, 0.02, 0.0225, 0.02, 0.01875, 0.0225, 0.02, 0.02, 0.02125, 0.02, 0.02, 0.02125, 0.02125, 0.01875, 0.0225, 0.0225, 0.02125, 0.0225, 0.02, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.02, 0.02, 0.02125, 0.02125, 0.2175, 0.88125, 0.94875, 0.9225, 0.24375, 0.21625, 0.0225, 0.77875, 0.78875, 0.76375, 0.0225, 0.02625, 0.02625, 0.02625, 0.02625, 0.02625, 0.02625, 0.0275, 0.0275, 0.0275, 0.02875, 0.02875, 0.02875, 0.04625, 0.22625, 0.915, 0.23375, 0.04, 0.0375, 0.0375, 0.0325, 0.03375, 0.03125, 0.03125, 0.0325, 0.03125, 0.0325, 0.035, 0.0475, 0.05625, 0.205], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRIM.gap.json b/pfam_gap_rates/CRIM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ae2d78c1da3a743f37cf99b36fd5816534e0812
--- /dev/null
+++ b/pfam_gap_rates/CRIM.gap.json
@@ -0,0 +1 @@
+{"family": "CRIM", "n_seqs": 228, "length": 191, "gap_rates": [0.4605263157894737, 0.17982456140350878, 0.16666666666666666, 0.16228070175438597, 0.16228070175438597, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15350877192982457, 0.14912280701754385, 0.14912280701754385, 0.8289473684210527, 0.18859649122807018, 0.15350877192982457, 0.13596491228070176, 0.13596491228070176, 0.13157894736842105, 0.12719298245614036, 0.8114035087719298, 0.12280701754385964, 0.12280701754385964, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.12719298245614036, 0.12719298245614036, 0.11403508771929824, 0.12280701754385964, 0.7280701754385965, 0.9298245614035088, 0.7807017543859649, 0.6798245614035088, 0.13596491228070176, 0.10964912280701754, 0.8377192982456141, 0.08333333333333333, 0.07894736842105263, 0.06578947368421052, 0.05701754385964912, 0.05701754385964912, 0.05701754385964912, 0.04824561403508772, 0.04824561403508772, 0.04824561403508772, 0.043859649122807015, 0.07456140350877193, 0.07894736842105263, 0.9078947368421053, 0.04824561403508772, 0.05263157894736842, 0.05263157894736842, 0.06140350877192982, 0.5, 0.25, 0.9210526315789473, 0.9473684210526315, 0.9473684210526315, 0.9166666666666666, 0.06140350877192982, 0.03508771929824561, 0.02631578947368421, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.017543859649122806, 0.6885964912280702, 0.7236842105263158, 0.7368421052631579, 0.7894736842105263, 0.8377192982456141, 0.7894736842105263, 0.7807017543859649, 0.7236842105263158, 0.7149122807017544, 0.6798245614035088, 0.013157894736842105, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.013157894736842105, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.06140350877192982, 0.03070175438596491, 0.02631578947368421, 0.017543859649122806, 0.017543859649122806, 0.013157894736842105, 0.008771929824561403, 0.017543859649122806, 0.5482456140350878, 0.7456140350877193, 0.7368421052631579, 0.8333333333333334, 0.8640350877192983, 0.8947368421052632, 0.868421052631579, 0.8421052631578947, 0.8070175438596491, 0.7236842105263158, 0.7763157894736842, 0.3508771929824561, 0.34210526315789475, 0.30701754385964913, 0.27631578947368424, 0.021929824561403508, 0.021929824561403508, 0.017543859649122806, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.008771929824561403, 0.008771929824561403, 0.22807017543859648, 0.021929824561403508, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.9429824561403509, 0.008771929824561403, 0.017543859649122806, 0.008771929824561403, 0.008771929824561403, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.021929824561403508, 0.6754385964912281, 0.7412280701754386, 0.7456140350877193, 0.7456140350877193, 0.7456140350877193, 0.7456140350877193, 0.7456140350877193, 0.8640350877192983, 0.9210526315789473, 0.9342105263157895, 0.8903508771929824, 0.75, 0.7456140350877193, 0.7456140350877193, 0.7456140350877193, 0.7456140350877193, 0.7412280701754386, 0.7192982456140351, 0.6359649122807017, 0.02631578947368421, 0.021929824561403508, 0.02631578947368421, 0.02631578947368421, 0.03070175438596491, 0.03070175438596491, 0.05701754385964912, 0.05701754385964912, 0.08771929824561403, 0.9473684210526315, 0.11842105263157894, 0.2412280701754386, 0.3201754385964912, 0.34649122807017546, 0.37280701754385964, 0.42105263157894735, 0.43859649122807015, 0.4692982456140351, 0.6271929824561403], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CS.gap.json b/pfam_gap_rates/CS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52d504d5421bae80eff7535ea9309b465e984a67
--- /dev/null
+++ b/pfam_gap_rates/CS.gap.json
@@ -0,0 +1 @@
+{"family": "CS", "n_seqs": 2050, "length": 100, "gap_rates": [0.8097560975609757, 0.3278048780487805, 0.144390243902439, 0.10146341463414635, 0.0873170731707317, 0.0824390243902439, 0.0721951219512195, 0.06682926829268293, 0.04926829268292683, 0.03902439024390244, 0.03121951219512195, 0.025365853658536587, 0.020975609756097562, 0.016585365853658537, 0.015609756097560976, 0.015121951219512195, 0.014634146341463415, 0.013658536585365854, 0.011707317073170732, 0.01121951219512195, 0.34195121951219515, 0.8853658536585366, 0.4248780487804878, 0.40780487804878046, 0.12926829268292683, 0.1248780487804878, 0.006829268292682927, 0.006829268292682927, 0.005853658536585366, 0.005853658536585366, 0.007804878048780488, 0.006829268292682927, 0.06390243902439025, 0.06, 0.014146341463414635, 0.011707317073170732, 0.005365853658536586, 0.8985365853658537, 0.8560975609756097, 0.006341463414634147, 0.00975609756097561, 0.00975609756097561, 0.010731707317073172, 0.014634146341463415, 0.624390243902439, 0.8809756097560976, 0.7946341463414635, 0.3029268292682927, 0.25658536585365854, 0.22682926829268293, 0.52, 0.24390243902439024, 0.09609756097560976, 0.08292682926829269, 0.10048780487804879, 0.1351219512195122, 0.08292682926829269, 0.09658536585365854, 0.21073170731707316, 0.7707317073170732, 0.8019512195121952, 0.8297560975609756, 0.9053658536585366, 0.948780487804878, 0.9419512195121951, 0.8707317073170732, 0.8229268292682926, 0.8004878048780488, 0.7614634146341464, 0.01902439024390244, 0.016097560975609757, 0.015121951219512195, 0.015121951219512195, 0.015121951219512195, 0.015609756097560976, 0.0175609756097561, 0.018536585365853658, 0.02048780487804878, 0.024390243902439025, 0.025365853658536587, 0.02926829268292683, 0.03073170731707317, 0.037073170731707315, 0.042926829268292686, 0.791219512195122, 0.06731707317073171, 0.922439024390244, 0.9307317073170732, 0.948780487804878, 0.9287804878048781, 0.9146341463414634, 0.08146341463414634, 0.09414634146341463, 0.09853658536585366, 0.10341463414634146, 0.10536585365853658, 0.11024390243902439, 0.11609756097560976, 0.12585365853658537, 0.13853658536585367], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CTNNBL.gap.json b/pfam_gap_rates/CTNNBL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0078ff2884791cd105f524da233042e01bccc84e
--- /dev/null
+++ b/pfam_gap_rates/CTNNBL.gap.json
@@ -0,0 +1 @@
+{"family": "CTNNBL", "n_seqs": 295, "length": 109, "gap_rates": [0.8915254237288136, 0.4610169491525424, 0.33559322033898303, 0.27796610169491526, 0.2677966101694915, 0.2576271186440678, 0.24745762711864408, 0.22033898305084745, 0.22033898305084745, 0.21016949152542372, 0.19661016949152543, 0.19322033898305085, 0.22372881355932203, 0.4135593220338983, 0.4033898305084746, 0.735593220338983, 0.9389830508474576, 0.8610169491525423, 0.6101694915254238, 0.08135593220338982, 0.07457627118644068, 0.0711864406779661, 0.061016949152542375, 0.0576271186440678, 0.0576271186440678, 0.05423728813559322, 0.04745762711864407, 0.04406779661016949, 0.04406779661016949, 0.04406779661016949, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.04067796610169491, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.03728813559322034, 0.04067796610169491, 0.04067796610169491, 0.03728813559322034, 0.03728813559322034, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.030508474576271188, 0.030508474576271188, 0.02711864406779661, 0.01694915254237288, 0.02711864406779661, 0.03728813559322034, 0.03389830508474576, 0.03389830508474576, 0.03728813559322034, 0.04067796610169491, 0.03728813559322034, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.03389830508474576, 0.030508474576271188, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.030508474576271188, 0.030508474576271188, 0.03389830508474576, 0.030508474576271188, 0.8576271186440678, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.03389830508474576, 0.04067796610169491, 0.04406779661016949, 0.04067796610169491, 0.04067796610169491, 0.04406779661016949, 0.05423728813559322, 0.04406779661016949, 0.04406779661016949, 0.04406779661016949, 0.04745762711864407, 0.04745762711864407, 0.05084745762711865, 0.05423728813559322, 0.05423728813559322, 0.0576271186440678, 0.0576271186440678, 0.0576271186440678, 0.0576271186440678, 0.0576271186440678, 0.0576271186440678, 0.06440677966101695, 0.08135593220338982, 0.1016949152542373, 0.1288135593220339, 0.2983050847457627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CYTH.gap.json b/pfam_gap_rates/CYTH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2609ed7ed3c5b7aa348e291faae08a1513e1fc6
--- /dev/null
+++ b/pfam_gap_rates/CYTH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cadherin-like.gap.json b/pfam_gap_rates/Cadherin-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2de22d82130e6dc5a6dd0034201c72560d762e52
--- /dev/null
+++ b/pfam_gap_rates/Cadherin-like.gap.json
@@ -0,0 +1 @@
+{"family": "Cadherin-like", "n_seqs": 714, "length": 112, "gap_rates": [0.7086834733893558, 0.5518207282913166, 0.45938375350140054, 0.35714285714285715, 0.2647058823529412, 0.21428571428571427, 0.242296918767507, 0.542016806722689, 0.6442577030812325, 0.938375350140056, 0.9495798319327731, 0.6582633053221288, 0.5980392156862745, 0.5, 0.22268907563025211, 0.22408963585434175, 0.9047619047619048, 0.7072829131652661, 0.5504201680672269, 0.9229691876750701, 0.938375350140056, 0.9201680672268907, 0.06162464985994398, 0.06022408963585434, 0.05042016806722689, 0.04341736694677871, 0.037815126050420166, 0.03361344537815126, 0.03081232492997199, 0.028011204481792718, 0.022408963585434174, 0.036414565826330535, 0.03361344537815126, 0.025210084033613446, 0.0196078431372549, 0.018207282913165267, 0.014005602240896359, 0.018207282913165267, 0.011204481792717087, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.00980392156862745, 0.9243697478991597, 0.8417366946778712, 0.05742296918767507, 0.05042016806722689, 0.046218487394957986, 0.025210084033613446, 0.023809523809523808, 0.03081232492997199, 0.029411764705882353, 0.025210084033613446, 0.015406162464985995, 0.00980392156862745, 0.06862745098039216, 0.1484593837535014, 0.24369747899159663, 0.25910364145658266, 0.38095238095238093, 0.6512605042016807, 0.8921568627450981, 0.9369747899159664, 0.9481792717086834, 0.9453781512605042, 0.9229691876750701, 0.8739495798319328, 0.8123249299719888, 0.438375350140056, 0.4061624649859944, 0.35154061624649857, 0.3081232492997199, 0.211484593837535, 0.16246498599439776, 0.06022408963585434, 0.02661064425770308, 0.07282913165266107, 0.0784313725490196, 0.015406162464985995, 0.0350140056022409, 0.0056022408963585435, 0.0056022408963585435, 0.8865546218487395, 0.0070028011204481795, 0.0056022408963585435, 0.0056022408963585435, 0.004201680672268907, 0.004201680672268907, 0.02661064425770308, 0.015406162464985995, 0.00980392156862745, 0.012605042016806723, 0.00980392156862745, 0.9481792717086834, 0.18347338935574228, 0.27450980392156865, 0.09103641456582633, 0.012605042016806723, 0.023809523809523808, 0.011204481792717087, 0.012605042016806723, 0.015406162464985995, 0.025210084033613446, 0.046218487394957986, 0.1092436974789916, 0.20728291316526612, 0.7717086834733894], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Calx-beta.gap.json b/pfam_gap_rates/Calx-beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03164f916a29f3e64b5a27027c17a7ee076e0e30
--- /dev/null
+++ b/pfam_gap_rates/Calx-beta.gap.json
@@ -0,0 +1 @@
+{"family": "Calx-beta", "n_seqs": 4212, "length": 115, "gap_rates": [0.9052706552706553, 0.7286324786324786, 0.6279677113010447, 0.568613485280152, 0.5370370370370371, 0.5180436847103513, 0.4928774928774929, 0.9377967711301045, 0.47412155745489076, 0.4551282051282051, 0.44254510921177587, 0.41263057929724595, 0.9057454890788225, 0.6965811965811965, 0.33974358974358976, 0.3162393162393162, 0.3114909781576448, 0.3055555555555556, 0.29748338081671416, 0.28917378917378916, 0.31932573599240266, 0.3027065527065527, 0.25213675213675213, 0.26282051282051283, 0.2331433998100665, 0.2143874643874644, 0.2070275403608737, 0.19658119658119658, 0.19183285849952517, 0.17331433998100665, 0.20726495726495728, 0.8798670465337132, 0.14767331433998102, 0.14031339031339032, 0.1346153846153846, 0.13295346628679963, 0.13105413105413105, 0.14102564102564102, 0.1305792972459639, 0.12962962962962962, 0.2851377018043685, 0.9128679962013295, 0.1517094017094017, 0.2312440645773979, 0.4349477682811016, 0.18945868945868946, 0.12155745489078823, 0.11490978157644824, 0.11134852801519468, 0.11087369420702754, 0.10992402659069325, 0.1111111111111111, 0.10968660968660969, 0.1412630579297246, 0.12654320987654322, 0.12701804368471034, 0.11965811965811966, 0.11324786324786325, 0.1087369420702754, 0.9245014245014245, 0.9451566951566952, 0.9335232668566001, 0.9173789173789174, 0.10422602089268757, 0.10707502374169041, 0.15954415954415954, 0.9472934472934473, 0.8547008547008547, 0.11182336182336182, 0.09211775878442545, 0.07905982905982906, 0.0754985754985755, 0.9021842355175689, 0.9349477682811016, 0.8074548907882241, 0.06861348528015195, 0.06220322886989554, 0.057929724596391265, 0.05413105413105413, 0.04819563152896486, 0.04700854700854701, 0.046058879392212725, 0.046296296296296294, 0.04653371320037987, 0.046296296296296294, 0.04700854700854701, 0.046058879392212725, 0.9245014245014245, 0.04653371320037987, 0.04819563152896486, 0.0543684710351377, 0.056505223171889836, 0.05745489078822412, 0.057929724596391265, 0.05864197530864197, 0.0600664767331434, 0.06267806267806268, 0.0657644824311491, 0.0681386514719848, 0.07359924026590693, 0.07763532763532764, 0.07929724596391263, 0.08190883190883191, 0.08475783475783476, 0.09021842355175688, 0.09235517568850903, 0.102326685660019, 0.1103988603988604, 0.11918328584995251, 0.1251187084520418, 0.13200379867046533, 0.14553656220322886, 0.1866096866096866, 0.24548907882241217, 0.741690408357075], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Capsule_synth.gap.json b/pfam_gap_rates/Capsule_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b3d0a9ec3d5c32da613540121651bdfad71ace9
--- /dev/null
+++ b/pfam_gap_rates/Capsule_synth.gap.json
@@ -0,0 +1 @@
+{"family": "Capsule_synth", "n_seqs": 627, "length": 320, "gap_rates": [0.9441786283891547, 0.7288676236044657, 0.6523125996810207, 0.6236044657097288, 0.5980861244019139, 0.5853269537480064, 0.583732057416268, 0.5853269537480064, 0.5869218500797448, 0.5885167464114832, 0.5885167464114832, 0.5869218500797448, 0.5853269537480064, 0.5789473684210527, 0.5757575757575758, 0.5741626794258373, 0.580542264752791, 0.580542264752791, 0.6794258373205742, 0.6044657097288676, 0.5374800637958532, 0.529505582137161, 0.5199362041467305, 0.5103668261562998, 0.5055821371610846, 0.49760765550239233, 0.4880382775119617, 0.4704944178628389, 0.4529505582137161, 0.4529505582137161, 0.4529505582137161, 0.4529505582137161, 0.4529505582137161, 0.4529505582137161, 0.4529505582137161, 0.45933014354066987, 0.6730462519936204, 0.6730462519936204, 0.6730462519936204, 0.6762360446570973, 0.7001594896331739, 0.6762360446570973, 0.6730462519936204, 0.6730462519936204, 0.6730462519936204, 0.671451355661882, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Carot_N.gap.json b/pfam_gap_rates/Carot_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6acadc9875e0b0e949a4e3f8698bb2349eca095f
--- /dev/null
+++ b/pfam_gap_rates/Carot_N.gap.json
@@ -0,0 +1 @@
+{"family": "Carot_N", "n_seqs": 116, "length": 152, "gap_rates": [0.6379310344827587, 0.5258620689655172, 0.3793103448275862, 0.25862068965517243, 0.15517241379310345, 0.10344827586206896, 0.09482758620689655, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.06896551724137931, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.034482758620689655, 0.04310344827586207, 0.034482758620689655, 0.034482758620689655, 0.04310344827586207, 0.034482758620689655, 0.04310344827586207, 0.034482758620689655, 0.04310344827586207, 0.034482758620689655, 0.05172413793103448, 0.9224137931034483, 0.8879310344827587, 0.07758620689655173, 0.05172413793103448, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.15517241379310345, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.05172413793103448, 0.0603448275862069, 0.08620689655172414, 0.09482758620689655, 0.11206896551724138, 0.11206896551724138, 0.13793103448275862, 0.41379310344827586], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cas_Cas5d.gap.json b/pfam_gap_rates/Cas_Cas5d.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08ac5485d4d3dbf0cce4305af20cc31513d5cd96
--- /dev/null
+++ b/pfam_gap_rates/Cas_Cas5d.gap.json
@@ -0,0 +1 @@
+{"family": "Cas_Cas5d", "n_seqs": 678, "length": 279, "gap_rates": [0.7271386430678466, 0.2581120943952802, 0.14896755162241887, 0.08112094395280237, 0.06932153392330384, 0.06047197640117994, 0.05752212389380531, 0.05457227138643068, 0.06489675516224189, 0.04424778761061947, 0.04129793510324484, 0.03392330383480826, 0.029498525073746312, 0.029498525073746312, 0.032448377581120944, 0.029498525073746312, 0.029498525073746312, 0.030973451327433628, 0.028023598820058997, 0.025073746312684365, 0.02359882005899705, 0.02064896755162242, 0.019174041297935103, 0.8716814159292036, 0.8392330383480826, 0.019174041297935103, 0.019174041297935103, 0.019174041297935103, 0.019174041297935103, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.019174041297935103, 0.017699115044247787, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.016224188790560472, 0.016224188790560472, 0.016224188790560472, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Cas_Csd1.gap.json b/pfam_gap_rates/Cas_Csd1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c4c968f2a95ef5c11eba05568120b5bb8b92c219
--- /dev/null
+++ b/pfam_gap_rates/Cas_Csd1.gap.json
@@ -0,0 +1 @@
+{"family": "Cas_Csd1", "n_seqs": 252, "length": 786, "gap_rates": [0.28174603174603174, 0.2619047619047619, 0.23015873015873015, 0.21825396825396826, 0.21428571428571427, 0.20634920634920634, 0.21031746031746032, 0.1984126984126984, 0.7777777777777778, 0.19444444444444445, 0.23809523809523808, 0.23015873015873015, 0.1865079365079365, 0.1388888888888889, 0.42063492063492064, 0.6507936507936508, 0.7222222222222222, 0.7817460317460317, 0.8650793650793651, 0.9126984126984127, 0.8849206349206349, 0.8253968253968254, 0.7579365079365079, 0.6746031746031746, 0.4801587301587302, 0.09126984126984126, 0.08333333333333333, 0.07936507936507936, 0.06746031746031746, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.05952380952380952, 0.05952380952380952, 0.06349206349206349, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CbiJ.gap.json b/pfam_gap_rates/CbiJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0dfaccab8f5dfd39f34d0122960f22d7f08a11fd
--- /dev/null
+++ b/pfam_gap_rates/CbiJ.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CbiN.gap.json b/pfam_gap_rates/CbiN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb79f8d1efe39caf36071d21290586cbdcb20f5a
--- /dev/null
+++ b/pfam_gap_rates/CbiN.gap.json
@@ -0,0 +1 @@
+{"family": "CbiN", "n_seqs": 230, "length": 82, "gap_rates": [0.5521739130434783, 0.2826086956521739, 0.14347826086956522, 0.05217391304347826, 0.02608695652173913, 0.013043478260869565, 0.013043478260869565, 0.013043478260869565, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.008695652173913044, 0.017391304347826087, 0.7478260869565218, 0.8478260869565217, 0.9304347826086956, 0.8956521739130435, 0.8, 0.691304347826087, 0.06956521739130435, 0.08695652173913043, 0.09130434782608696, 0.008695652173913044, 0.8695652173913043, 0.9217391304347826, 0.8043478260869565, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.021739130434782608, 0.12173913043478261, 0.8913043478260869, 0.11304347826086956, 0.013043478260869565, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.008695652173913044, 0.004347826086956522, 0.008695652173913044, 0.008695652173913044, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.8391304347826087, 0.8391304347826087, 0.8391304347826087, 0.8391304347826087, 0.8347826086956521, 0.008695652173913044, 0.0391304347826087, 0.013043478260869565, 0.008695652173913044, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.013043478260869565, 0.28695652173913044], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CbtB.gap.json b/pfam_gap_rates/CbtB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50dba3b1356be835398a048c307f1df4f6433d49
--- /dev/null
+++ b/pfam_gap_rates/CbtB.gap.json
@@ -0,0 +1 @@
+{"family": "CbtB", "n_seqs": 167, "length": 58, "gap_rates": [0.9341317365269461, 0.8083832335329342, 0.6706586826347305, 0.5808383233532934, 0.5089820359281437, 0.46706586826347307, 0.2874251497005988, 0.20359281437125748, 0.11976047904191617, 0.10179640718562874, 0.059880239520958084, 0.04790419161676647, 0.04790419161676647, 0.041916167664670656, 0.03592814371257485, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.03592814371257485, 0.03592814371257485, 0.023952095808383235, 0.029940119760479042, 0.011976047904191617, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005988023952095809, 0.0, 0.4251497005988024, 0.4251497005988024, 0.4251497005988024, 0.8323353293413174, 0.49101796407185627, 0.4251497005988024, 0.4251497005988024, 0.4251497005988024, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005988023952095809, 0.005988023952095809], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cellulose_synt.gap.json b/pfam_gap_rates/Cellulose_synt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14ec88c7462c9974e0cc8d7127bab9a214769ad0
--- /dev/null
+++ b/pfam_gap_rates/Cellulose_synt.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cg6151-P.gap.json b/pfam_gap_rates/Cg6151-P.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f150569dff2ae86cdcaee42bd8c492160f823839
--- /dev/null
+++ b/pfam_gap_rates/Cg6151-P.gap.json
@@ -0,0 +1 @@
+{"family": "Cg6151-P", "n_seqs": 176, "length": 116, "gap_rates": [0.39204545454545453, 0.16477272727272727, 0.16477272727272727, 0.14772727272727273, 0.14772727272727273, 0.13068181818181818, 0.10795454545454546, 0.09090909090909091, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.8522727272727273, 0.8522727272727273, 0.8409090909090909, 0.06818181818181818, 0.08522727272727272, 0.07954545454545454, 0.07954545454545454, 0.13068181818181818, 0.10795454545454546, 0.11363636363636363, 0.32386363636363635, 0.056818181818181816, 0.045454545454545456, 0.03977272727272727, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.022727272727272728, 0.017045454545454544, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.005681818181818182, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.4431818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.028409090909090908, 0.03409090909090909, 0.03409090909090909, 0.03977272727272727, 0.03977272727272727, 0.42045454545454547, 0.045454545454545456, 0.03977272727272727, 0.03977272727272727, 0.045454545454545456, 0.45454545454545453, 0.0625, 0.056818181818181816, 0.045454545454545456, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.05113636363636364, 0.0625, 0.06818181818181818, 0.06818181818181818, 0.07386363636363637, 0.07954545454545454, 0.08522727272727272, 0.10227272727272728, 0.10795454545454546, 0.13068181818181818], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CheB_methylest.gap.json b/pfam_gap_rates/CheB_methylest.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ed88cbf96d65081e0e8ed616710c928c417dc12
--- /dev/null
+++ b/pfam_gap_rates/CheB_methylest.gap.json
@@ -0,0 +1 @@
+{"family": "CheB_methylest", "n_seqs": 1680, "length": 189, "gap_rates": [0.18095238095238095, 0.03988095238095238, 0.03333333333333333, 0.03214285714285714, 0.030952380952380953, 0.02976190476190476, 0.02976190476190476, 0.02976190476190476, 0.02976190476190476, 0.02976190476190476, 0.029166666666666667, 0.029166666666666667, 0.02857142857142857, 0.026785714285714284, 0.025595238095238095, 0.024404761904761905, 0.023214285714285715, 0.02261904761904762, 0.02261904761904762, 0.022023809523809525, 0.020833333333333332, 0.024404761904761905, 0.08214285714285714, 0.030357142857142857, 0.020833333333333332, 0.09583333333333334, 0.10595238095238095, 0.017261904761904763, 0.017261904761904763, 0.017261904761904763, 0.017261904761904763, 0.017261904761904763, 0.017261904761904763, 0.01488095238095238, 0.015476190476190477, 0.015476190476190477, 0.03154761904761905, 0.01607142857142857, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.013095238095238096, 0.01369047619047619, 0.013095238095238096, 0.013095238095238096, 0.013095238095238096, 0.0125, 0.013095238095238096, 0.017261904761904763, 0.014285714285714285, 0.01369047619047619, 0.013095238095238096, 0.0125, 0.0125, 0.011904761904761904, 0.011904761904761904, 0.0125, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.0125, 0.0125, 0.01369047619047619, 0.01369047619047619, 0.01607142857142857, 0.017261904761904763, 0.01607142857142857, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.015476190476190477, 0.014285714285714285, 0.014285714285714285, 0.01488095238095238, 0.016666666666666666, 0.015476190476190477, 0.01488095238095238, 0.01488095238095238, 0.01488095238095238, 0.01488095238095238, 0.023809523809523808, 0.26011904761904764, 0.493452380952381, 0.8517857142857143, 0.9386904761904762, 0.5535714285714286, 0.4398809523809524, 0.02857142857142857, 0.01904761904761905, 0.01488095238095238, 0.17559523809523808, 0.12023809523809524, 0.05, 0.5202380952380953, 0.1523809523809524, 0.02142857142857143, 0.7851190476190476, 0.9232142857142858, 0.6005952380952381, 0.0380952380952381, 0.2517857142857143, 0.08630952380952381, 0.09226190476190477, 0.018452380952380953, 0.8946428571428572, 0.9083333333333333, 0.8773809523809524, 0.017857142857142856, 0.016666666666666666, 0.01607142857142857, 0.015476190476190477, 0.015476190476190477, 0.01488095238095238, 0.01488095238095238, 0.015476190476190477, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.017261904761904763, 0.017261904761904763, 0.01904761904761905, 0.027976190476190477, 0.041666666666666664, 0.017261904761904763, 0.01607142857142857, 0.015476190476190477, 0.015476190476190477, 0.015476190476190477, 0.01607142857142857, 0.015476190476190477, 0.01369047619047619, 0.014285714285714285, 0.01488095238095238, 0.01488095238095238, 0.01488095238095238, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.017261904761904763, 0.017857142857142856, 0.017857142857142856, 0.017261904761904763, 0.017261904761904763, 0.017261904761904763, 0.016666666666666666, 0.017261904761904763, 0.017261904761904763, 0.017261904761904763, 0.017261904761904763, 0.016666666666666666, 0.017261904761904763, 0.9464285714285714, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.019642857142857142, 0.023809523809523808, 0.01904761904761905, 0.01904761904761905, 0.019642857142857142, 0.019642857142857142, 0.020833333333333332, 0.022023809523809525, 0.02142857142857143, 0.02142857142857143, 0.022023809523809525, 0.02261904761904762, 0.023214285714285715, 0.023214285714285715, 0.023214285714285715, 0.023214285714285715, 0.023809523809523808, 0.025, 0.03511904761904762, 0.033928571428571426, 0.03154761904761905, 0.03333333333333333, 0.034523809523809526, 0.034523809523809526, 0.034523809523809526, 0.03571428571428571, 0.03630952380952381, 0.036904761904761905, 0.0380952380952381, 0.042261904761904764, 0.07083333333333333, 0.1636904761904762, 0.4232142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chorismate_synt.gap.json b/pfam_gap_rates/Chorismate_synt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24ac393e4653b9b1f84b78e29bad8ef6db399451
--- /dev/null
+++ b/pfam_gap_rates/Chorismate_synt.gap.json
@@ -0,0 +1 @@
+{"family": "Chorismate_synt", "n_seqs": 2105, "length": 399, "gap_rates": [0.18052256532066507, 0.09121140142517815, 0.07505938242280286, 0.07410926365795724, 0.07078384798099763, 0.06983372921615202, 0.06983372921615202, 0.06983372921615202, 0.06983372921615202, 0.07030878859857483, 0.06935866983372922, 0.06935866983372922, 0.067458432304038, 0.0655581947743468, 0.065083135391924, 0.06413301662707839, 0.06365795724465559, 0.06318289786223277, 0.06318289786223277, 0.06365795724465559, 0.060807600950118765, 0.061282660332541566, 0.06033254156769596, 0.06033254156769596, 0.05843230403800475, 0.057482185273159146, 0.05795724465558195, 0.05795724465558195, 0.057482185273159146, 0.056532066508313536, 0.056532066508313536, 0.056057007125890734, 0.05463182897862233, 0.05463182897862233, 0.05368171021377672, 0.052731591448931116, 0.052731591448931116, 0.052731591448931116, 0.05320665083135392, 0.05368171021377672, 0.05415676959619953, 0.05368171021377672, 0.05415676959619953, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Chrome_Resist.gap.json b/pfam_gap_rates/Chrome_Resist.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa4fd42d969abdb8f93dc1fa1bd5bb2675dda3b9
--- /dev/null
+++ b/pfam_gap_rates/Chrome_Resist.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Chromo_shadow.gap.json b/pfam_gap_rates/Chromo_shadow.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0a8265a7f49b951a9b17ae55fb64fbee7919644
--- /dev/null
+++ b/pfam_gap_rates/Chromo_shadow.gap.json
@@ -0,0 +1 @@
+{"family": "Chromo_shadow", "n_seqs": 384, "length": 61, "gap_rates": [0.515625, 0.20833333333333334, 0.171875, 0.14322916666666666, 0.1171875, 0.11197916666666667, 0.09635416666666667, 0.08333333333333333, 0.9401041666666666, 0.08333333333333333, 0.07291666666666667, 0.0625, 0.7291666666666666, 0.7526041666666666, 0.9270833333333334, 0.8020833333333334, 0.7526041666666666, 0.7161458333333334, 0.0546875, 0.049479166666666664, 0.052083333333333336, 0.036458333333333336, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.026041666666666668, 0.015625, 0.013020833333333334, 0.3411458333333333, 0.2942708333333333, 0.0078125, 0.6901041666666666, 0.0078125, 0.0078125, 0.0078125, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.010416666666666666, 0.010416666666666666, 0.013020833333333334, 0.010416666666666666, 0.015625, 0.015625, 0.015625, 0.020833333333333332, 0.026041666666666668, 0.041666666666666664, 0.044270833333333336, 0.052083333333333336, 0.0546875, 0.059895833333333336, 0.07552083333333333, 0.10677083333333333, 0.11458333333333333, 0.2265625, 0.28125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ChuX_HutX.gap.json b/pfam_gap_rates/ChuX_HutX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55551a5d1c43808de324f5b91452a443ef4edb6e
--- /dev/null
+++ b/pfam_gap_rates/ChuX_HutX.gap.json
@@ -0,0 +1 @@
+{"family": "ChuX_HutX", "n_seqs": 155, "length": 160, "gap_rates": [0.36129032258064514, 0.3096774193548387, 0.2709677419354839, 0.24516129032258063, 0.24516129032258063, 0.24516129032258063, 0.23870967741935484, 0.23870967741935484, 0.23870967741935484, 0.23870967741935484, 0.23870967741935484, 0.23870967741935484, 0.7870967741935484, 0.23870967741935484, 0.23870967741935484, 0.23870967741935484, 0.22580645161290322, 0.24516129032258063, 0.24516129032258063, 0.41935483870967744, 0.21935483870967742, 0.2, 0.1870967741935484, 0.18064516129032257, 0.17419354838709677, 0.16774193548387098, 0.36774193548387096, 0.9354838709677419, 0.9290322580645162, 0.07741935483870968, 0.03870967741935484, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.9032258064516129, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2064516129032258, 0.23225806451612904, 0.3548387096774194, 0.3548387096774194, 0.7354838709677419, 0.8838709677419355, 0.8838709677419355, 0.6451612903225806, 0.41935483870967744, 0.4064516129032258, 0.15483870967741936, 0.3870967741935484, 0.5225806451612903, 0.6258064516129033, 0.6, 0.5096774193548387, 0.36774193548387096, 0.12903225806451613, 0.12903225806451613, 0.025806451612903226, 0.025806451612903226, 0.8580645161290322, 0.9483870967741935, 0.864516129032258, 0.8064516129032258, 0.5806451612903226, 0.5935483870967742, 0.7806451612903226, 0.4645161290322581, 0.12258064516129032, 0.0064516129032258064, 0.0, 0.5806451612903226, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.5225806451612903, 0.03225806451612903, 0.07096774193548387, 0.8387096774193549, 0.32903225806451614, 0.07096774193548387, 0.07096774193548387, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.25161290322580643, 0.44516129032258067, 0.05161290322580645, 0.05161290322580645, 0.7870967741935484, 0.07741935483870968, 0.07096774193548387, 0.07741935483870968, 0.4129032258064516, 0.6580645161290323, 0.4064516129032258, 0.33548387096774196, 0.3419354838709677, 0.12903225806451613, 0.11612903225806452, 0.11612903225806452, 0.11612903225806452, 0.12258064516129032, 0.17419354838709677, 0.21935483870967742, 0.36129032258064514], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CinA.gap.json b/pfam_gap_rates/CinA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..478572c7ba13a54ee1820146292e6105f5c0e49b
--- /dev/null
+++ b/pfam_gap_rates/CinA.gap.json
@@ -0,0 +1 @@
+{"family": "CinA", "n_seqs": 2005, "length": 160, "gap_rates": [0.6927680798004987, 0.4399002493765586, 0.2967581047381546, 0.19900249376558604, 0.13316708229426433, 0.0827930174563591, 0.05685785536159601, 0.04937655860349127, 0.04239401496259352, 0.04039900249376559, 0.03790523690773067, 0.044389027431421445, 0.04239401496259352, 0.030922693266832918, 0.030423940149625937, 0.029925187032418952, 0.02892768079800499, 0.02493765586034913, 0.02344139650872818, 0.022942643391521196, 0.022942643391521196, 0.022942643391521196, 0.022942643391521196, 0.022443890274314215, 0.022443890274314215, 0.022443890274314215, 0.022443890274314215, 0.020448877805486283, 0.0199501246882793, 0.0199501246882793, 0.0199501246882793, 0.01945137157107232, 0.01945137157107232, 0.01945137157107232, 0.018952618453865335, 0.017456359102244388, 0.017456359102244388, 0.017456359102244388, 0.0199501246882793, 0.017955112219451373, 0.017955112219451373, 0.017955112219451373, 0.016957605985037406, 0.017456359102244388, 0.017456359102244388, 0.018453865336658354, 0.017955112219451373, 0.017955112219451373, 0.018453865336658354, 0.023940149625935162, 0.021945137157107233, 0.02144638403990025, 0.020947630922693267, 0.02144638403990025, 0.021945137157107233, 0.020448877805486283, 0.02892768079800499, 0.03690773067331671, 0.021945137157107233, 0.018453865336658354, 0.01945137157107232, 0.0199501246882793, 0.01945137157107232, 0.020448877805486283, 0.03890274314214464, 0.041895261845386535, 0.0399002493765586, 0.04139650872817955, 0.038403990024937655, 0.02144638403990025, 0.0199501246882793, 0.01945137157107232, 0.020448877805486283, 0.01945137157107232, 0.01945137157107232, 0.018952618453865335, 0.018952618453865335, 0.018952618453865335, 0.01945137157107232, 0.016957605985037406, 0.017955112219451373, 0.018453865336658354, 0.018453865336658354, 0.0199501246882793, 0.020947630922693267, 0.022942643391521196, 0.023940149625935162, 0.022443890274314215, 0.020947630922693267, 0.020947630922693267, 0.020947630922693267, 0.0199501246882793, 0.0199501246882793, 0.0199501246882793, 0.01945137157107232, 0.018952618453865335, 0.020947630922693267, 0.022443890274314215, 0.02344139650872818, 0.02493765586034913, 0.02543640897755611, 0.027930174563591023, 0.027930174563591023, 0.040897755610972565, 0.33216957605985037, 0.05236907730673317, 0.03640897755610972, 0.035910224438902745, 0.03541147132169576, 0.0344139650872818, 0.03291770573566085, 0.03341645885286783, 0.03192019950124688, 0.03192019950124688, 0.0314214463840399, 0.0314214463840399, 0.0314214463840399, 0.0314214463840399, 0.0314214463840399, 0.032418952618453865, 0.03341645885286783, 0.03640897755610972, 0.040897755610972565, 0.9052369077306733, 0.9296758104738154, 0.9206982543640898, 0.627930174563591, 0.04039900249376559, 0.0399002493765586, 0.038403990024937655, 0.04039900249376559, 0.040897755610972565, 0.041895261845386535, 0.04239401496259352, 0.04339152119700748, 0.04389027431421447, 0.044389027431421445, 0.9466334164588529, 0.7955112219451371, 0.04488778054862843, 0.04588528678304239, 0.04738154613466334, 0.047880299251870324, 0.04837905236907731, 0.04837905236907731, 0.04937655860349127, 0.04987531172069826, 0.04987531172069826, 0.051371571072319204, 0.05236907730673317, 0.053865336658354114, 0.05685785536159601, 0.06034912718204489, 0.06234413965087282, 0.06433915211970075, 0.07281795511221945, 0.10124688279301745, 0.2139650872817955, 0.41496259351620945, 0.8773067331670823], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cir_Bir_Yir.gap.json b/pfam_gap_rates/Cir_Bir_Yir.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..344ce59719d751a3e87afe7513f314180d416060
--- /dev/null
+++ b/pfam_gap_rates/Cir_Bir_Yir.gap.json
@@ -0,0 +1 @@
+{"family": "Cir_Bir_Yir", "n_seqs": 1390, "length": 322, "gap_rates": [0.28992805755395684, 0.24676258992805755, 0.22805755395683452, 0.20575539568345325, 0.20071942446043164, 0.18776978417266188, 0.17697841726618704, 0.17338129496402876, 0.17050359712230215, 0.16618705035971224, 0.16115107913669063, 0.160431654676259, 0.15971223021582734, 0.16330935251798562, 0.17410071942446043, 0.3748201438848921, 0.2158273381294964, 0.1647482014388489, 0.16115107913669063, 0.15683453237410072, 0.1474820143884892, 0.14028776978417265, 0.13956834532374102, 0.2776978417266187, 0.2741007194244604, 0.29856115107913667, 0.14028776978417265, 0.1366906474820144, 0.1302158273381295, 0.1302158273381295, 0.13093525179856116, 0.12949640287769784, 0.12877697841726618, 0.13093525179856116, 0.13884892086330936, 0.7179856115107913, 0.7251798561151079, 0.8503597122302158, 0.7532374100719424, 0.7215827338129497, 0.6956834532374101, 0.14316546762589927, 0.16330935251798562, 0.12805755395683452, 0.13093525179856116, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Cleaved_Adhesin.gap.json b/pfam_gap_rates/Cleaved_Adhesin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f40527bea5cbe1bf63f0252f1d079927b15b929
--- /dev/null
+++ b/pfam_gap_rates/Cleaved_Adhesin.gap.json
@@ -0,0 +1 @@
+{"family": "Cleaved_Adhesin", "n_seqs": 107, "length": 183, "gap_rates": [0.8411214953271028, 0.794392523364486, 0.6915887850467289, 0.5794392523364486, 0.5046728971962616, 0.48598130841121495, 0.45794392523364486, 0.4485981308411215, 0.4392523364485981, 0.42990654205607476, 0.5046728971962616, 0.411214953271028, 0.38317757009345793, 0.34579439252336447, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.35514018691588783, 0.3364485981308411, 0.3364485981308411, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.3364485981308411, 0.3364485981308411, 0.34579439252336447, 0.3364485981308411, 0.32710280373831774, 0.308411214953271, 0.5794392523364486, 0.5514018691588785, 0.45794392523364486, 0.897196261682243, 0.8037383177570093, 0.34579439252336447, 0.24299065420560748, 0.205607476635514, 0.205607476635514, 0.205607476635514, 0.18691588785046728, 0.35514018691588783, 0.2523364485981308, 0.205607476635514, 0.205607476635514, 0.205607476635514, 0.1588785046728972, 0.1308411214953271, 0.14953271028037382, 0.14953271028037382, 0.37383177570093457, 0.32710280373831774, 0.308411214953271, 0.3364485981308411, 0.45794392523364486, 0.3644859813084112, 0.9252336448598131, 0.8691588785046729, 0.17757009345794392, 0.12149532710280374, 0.09345794392523364, 0.07476635514018691, 0.08411214953271028, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.3925233644859813, 0.35514018691588783, 0.3644859813084112, 0.21495327102803738, 0.11214953271028037, 0.11214953271028037, 0.3644859813084112, 0.2336448598130841, 0.08411214953271028, 0.09345794392523364, 0.11214953271028037, 0.12149532710280374, 0.11214953271028037, 0.12149532710280374, 0.1308411214953271, 0.14018691588785046, 0.12149532710280374, 0.1308411214953271, 0.6728971962616822, 0.14018691588785046, 0.18691588785046728, 0.18691588785046728, 0.14953271028037382, 0.14018691588785046, 0.14953271028037382, 0.14953271028037382, 0.14953271028037382, 0.14953271028037382, 0.14018691588785046, 0.14953271028037382, 0.14953271028037382, 0.17757009345794392, 0.18691588785046728, 0.1588785046728972, 0.18691588785046728, 0.21495327102803738, 0.205607476635514, 0.205607476635514, 0.19626168224299065, 0.19626168224299065, 0.205607476635514, 0.5981308411214953, 0.411214953271028, 0.3644859813084112, 0.3644859813084112, 0.3177570093457944, 0.3364485981308411, 0.3177570093457944, 0.9345794392523364, 0.9158878504672897, 0.6448598130841121, 0.5046728971962616, 0.42990654205607476, 0.4953271028037383, 0.514018691588785, 0.5233644859813084, 0.7476635514018691, 0.6915887850467289, 0.719626168224299, 0.719626168224299, 0.7009345794392523, 0.6635514018691588, 0.6728971962616822, 0.6728971962616822, 0.6261682242990654, 0.616822429906542, 0.5794392523364486, 0.5607476635514018, 0.4953271028037383, 0.45794392523364486, 0.42990654205607476, 0.42990654205607476, 0.4205607476635514, 0.4205607476635514, 0.42990654205607476, 0.42990654205607476, 0.4205607476635514, 0.4205607476635514, 0.411214953271028, 0.4205607476635514, 0.4205607476635514, 0.4205607476635514, 0.4205607476635514, 0.4205607476635514, 0.4205607476635514, 0.822429906542056, 0.8504672897196262, 0.7850467289719626, 0.411214953271028, 0.411214953271028, 0.4205607476635514, 0.4205607476635514, 0.4485981308411215, 0.4672897196261682, 0.5327102803738317, 0.4672897196261682, 0.4485981308411215, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.45794392523364486, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.4953271028037383, 0.5327102803738317, 0.7476635514018691], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Clr5.gap.json b/pfam_gap_rates/Clr5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1c3b3507e7e7a6f00f953408500369ca76c2357
--- /dev/null
+++ b/pfam_gap_rates/Clr5.gap.json
@@ -0,0 +1 @@
+{"family": "Clr5", "n_seqs": 400, "length": 54, "gap_rates": [0.9025, 0.375, 0.1875, 0.08, 0.0325, 0.0325, 0.0275, 0.025, 0.0225, 0.015, 0.015, 0.015, 0.015, 0.0125, 0.015, 0.0125, 0.1225, 0.1025, 0.02, 0.025, 0.0175, 0.0075, 0.0075, 0.0075, 0.0075, 0.0075, 0.005, 0.005, 0.005, 0.0, 0.0, 0.0125, 0.0375, 0.055, 0.005, 0.005, 0.005, 0.0075, 0.0225, 0.0575, 0.06, 0.075, 0.0775, 0.0775, 0.08, 0.0825, 0.0825, 0.09, 0.1075, 0.1175, 0.12, 0.1275, 0.1625, 0.3575], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CobU.gap.json b/pfam_gap_rates/CobU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a894b39a8b86cadbc866b9e0ff383b95a1ba4146
--- /dev/null
+++ b/pfam_gap_rates/CobU.gap.json
@@ -0,0 +1 @@
+{"family": "CobU", "n_seqs": 1123, "length": 193, "gap_rates": [0.39715048975957257, 0.18165627782724844, 0.17275155832591274, 0.16651825467497774, 0.16651825467497774, 0.16651825467497774, 0.16562778272484416, 0.16562778272484416, 0.16562778272484416, 0.16562778272484416, 0.16562778272484416, 0.16562778272484416, 0.16562778272484416, 0.163846838824577, 0.1620658949243099, 0.1611754229741763, 0.1611754229741763, 0.1611754229741763, 0.1620658949243099, 0.8584149599287623, 0.9038290293855743, 0.8815672306322351, 0.8201246660730187, 0.1611754229741763, 0.21015138023152272, 0.24220837043633126, 0.19946571682991987, 0.16028495102404275, 0.15761353517364202, 0.15761353517364202, 0.15939447907390916, 0.1585040071237756, 0.1585040071237756, 0.1585040071237756, 0.15761353517364202, 0.15761353517364202, 0.15761353517364202, 0.1585040071237756, 0.16028495102404275, 0.8227960819234195, 0.7978628673196795, 0.1611754229741763, 0.1611754229741763, 0.1611754229741763, 0.1585040071237756, 0.15672306322350846, 0.15672306322350846, 0.1585040071237756, 0.15761353517364202, 0.15761353517364202, 0.15761353517364202, 0.15761353517364202, 0.1549421193232413, 0.1522707034728406, 0.1495992876224399, 0.1495992876224399, 0.9403383793410508, 0.9412288512911843, 0.8121104185218165, 0.15048975957257346, 0.15048975957257346, 0.14781834372217276, 0.1460373998219056, 0.14514692787177205, 0.14514692787177205, 0.14514692787177205, 0.14514692787177205, 0.14514692787177205, 0.23864648263579696, 0.14870881567230632, 0.14247551202137132, 0.14158504007123776, 0.14069456812110417, 0.14158504007123776, 0.1460373998219056, 0.15048975957257346, 0.19946571682991987, 0.1923419412288513, 0.1549421193232413, 0.20302760463045413, 0.2804986642920748, 0.9136242208370436, 0.9456812110418522, 0.6268922528940338, 0.3170080142475512, 0.1246660730186999, 0.11754229741763135, 0.11665182546749778, 0.1157613535173642, 0.11398040961709706, 0.11398040961709706, 0.11398040961709706, 0.11308993766696349, 0.11219946571682991, 0.10952804986642921, 0.10863757791629564, 0.10863757791629564, 0.10863757791629564, 0.10507569011576136, 0.10418521816562779, 0.10329474621549421, 0.10507569011576136, 0.10507569011576136, 0.1558325912733749, 0.195013357079252, 0.4479073909171861, 0.4541406945681211, 0.5378450578806767, 0.6731967943009796, 0.7221727515583259, 0.811219946571683, 0.8691006233303651, 0.8975957257346393, 0.9483526268922529, 0.8851291184327693, 0.8299198575244879, 0.7702582368655387, 0.6892252894033838, 0.6197684772929652, 0.4683882457702582, 0.3419412288512912, 0.11754229741763135, 0.09884238646482636, 0.09260908281389137, 0.07747105966162066, 0.06678539626001781, 0.06144256455921639, 0.058771148708815675, 0.053428317008014245, 0.04630454140694568, 0.04808548530721282, 0.04007123775601069, 0.039180765805877114, 0.0365093499554764, 0.0365093499554764, 0.03561887800534283, 0.037399821905609976, 0.9483526268922529, 0.04808548530721282, 0.0365093499554764, 0.03294746215494212, 0.024933214603739984, 0.024933214603739984, 0.02404274265360641, 0.0213713268032057, 0.02315227070347284, 0.02226179875333927, 0.02226179875333927, 0.02226179875333927, 0.02315227070347284, 0.0213713268032057, 0.0213713268032057, 0.02226179875333927, 0.02226179875333927, 0.02226179875333927, 0.02315227070347284, 0.02404274265360641, 0.02315227070347284, 0.025823686553873553, 0.02404274265360641, 0.02315227070347284, 0.02404274265360641, 0.02315227070347284, 0.02315227070347284, 0.02315227070347284, 0.02315227070347284, 0.02315227070347284, 0.02315227070347284, 0.02315227070347284, 0.02404274265360641, 0.02404274265360641, 0.02404274265360641, 0.02404274265360641, 0.02404274265360641, 0.024933214603739984, 0.024933214603739984, 0.024933214603739984, 0.024933214603739984, 0.024933214603739984, 0.024933214603739984, 0.024933214603739984, 0.024933214603739984, 0.025823686553873553, 0.026714158504007122, 0.028495102404274265, 0.031166518254674976, 0.032056990204808546, 0.032056990204808546, 0.03561887800534283, 0.04452359750667854, 0.07479964381121995, 0.2413178984861977, 0.5930543187889582], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CobW_C.gap.json b/pfam_gap_rates/CobW_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee14391ba67c9e685be1e841677c785beefc9b02
--- /dev/null
+++ b/pfam_gap_rates/CobW_C.gap.json
@@ -0,0 +1 @@
+{"family": "CobW_C", "n_seqs": 2331, "length": 124, "gap_rates": [0.5096525096525096, 0.3333333333333333, 0.24453024453024452, 0.21492921492921493, 0.19862719862719863, 0.18704418704418704, 0.1788931788931789, 0.16945516945516945, 0.16173316173316174, 0.13813813813813813, 0.12827112827112827, 0.12398112398112399, 0.11325611325611326, 0.10682110682110682, 0.09266409266409266, 0.08708708708708708, 0.07722007722007722, 0.07207207207207207, 0.06864006864006864, 0.06563706563706563, 0.06263406263406264, 0.06177606177606178, 0.057486057486057486, 0.4624624624624625, 0.5928785928785929, 0.9403689403689404, 0.879021879021879, 0.5765765765765766, 0.35263835263835264, 0.06006006006006006, 0.031746031746031744, 0.014586014586014585, 0.011154011154011155, 0.011154011154011155, 0.010296010296010296, 0.009867009867009866, 0.009009009009009009, 0.007722007722007722, 0.006435006435006435, 0.006435006435006435, 0.006864006864006864, 0.006435006435006435, 0.007293007293007293, 0.006435006435006435, 0.005577005577005577, 0.006006006006006006, 0.17331617331617333, 0.07293007293007293, 0.655941655941656, 0.005148005148005148, 0.004719004719004719, 0.003432003432003432, 0.002145002145002145, 0.001716001716001716, 0.001716001716001716, 0.002574002574002574, 0.002574002574002574, 0.003003003003003003, 0.002574002574002574, 0.003003003003003003, 0.003003003003003003, 0.003432003432003432, 0.003432003432003432, 0.42342342342342343, 0.19991419991419992, 0.14671814671814673, 0.14843414843414843, 0.1377091377091377, 0.15015015015015015, 0.1583011583011583, 0.11196911196911197, 0.7267267267267268, 0.7391677391677391, 0.7447447447447447, 0.7456027456027456, 0.7468897468897469, 0.7477477477477478, 0.7494637494637495, 0.7511797511797512, 0.7533247533247533, 0.7571857571857572, 0.7816387816387816, 0.9253539253539254, 0.7713427713427713, 0.7546117546117546, 0.752037752037752, 0.7503217503217503, 0.749034749034749, 0.7477477477477478, 0.746031746031746, 0.7447447447447447, 0.7421707421707422, 0.7335907335907336, 0.7194337194337195, 0.6091806091806092, 0.3333333333333333, 0.11497211497211497, 0.03903903903903904, 0.02531102531102531, 0.013728013728013728, 0.009438009438009438, 0.009438009438009438, 0.009438009438009438, 0.009867009867009866, 0.009867009867009866, 0.011154011154011155, 0.01716001716001716, 0.02445302445302445, 0.9017589017589017, 0.029601029601029602, 0.03088803088803089, 0.03689403689403689, 0.04847704847704848, 0.05062205062205062, 0.057057057057057055, 0.06048906048906049, 0.06563706563706563, 0.07464607464607464, 0.08665808665808666, 0.09867009867009867, 0.1788931788931789, 0.26083226083226085, 0.3710853710853711, 0.5392535392535392], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cofilin_ADF.gap.json b/pfam_gap_rates/Cofilin_ADF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..488e9d1afc63a02e505fde567be97a5e16b7c465
--- /dev/null
+++ b/pfam_gap_rates/Cofilin_ADF.gap.json
@@ -0,0 +1 @@
+{"family": "Cofilin_ADF", "n_seqs": 1997, "length": 155, "gap_rates": [0.756134201301953, 0.5553329994992489, 0.3785678517776665, 0.33350025037556336, 0.2939409113670506, 0.26189283925888834, 0.24586880320480722, 0.23485227841762643, 0.22383575363044567, 0.2198297446169254, 0.42163244867300953, 0.23084626940410616, 0.24336504757135705, 0.928392588883325, 0.943415122684026, 0.885828743114672, 0.4782173259889835, 0.2699048572859289, 0.23184777165748624, 0.1472208312468703, 0.13670505758637957, 0.13019529293940912, 0.12518778167250877, 0.12068102153229844, 0.11667501251877817, 0.14772158237356034, 0.14371557336004007, 0.9178768152228343, 0.15673510265398097, 0.28492739108662996, 0.15072608913370056, 0.0771156735102654, 0.07411116675012519, 0.07361041562343515, 0.07160741111667501, 0.07210816224336505, 0.1041562343515273, 0.08012018027040561, 0.07911867801702553, 0.07961942914371557, 0.9394091136705057, 0.8332498748122183, 0.4416624937406109, 0.6875312969454181, 0.5267901852779169, 0.8192288432648973, 0.8958437656484727, 0.9364046069103655, 0.9238858287431146, 0.8607911867801703, 0.8047070605908864, 0.30045067601402103, 0.08062093139709564, 0.04406609914872309, 0.04206309464196294, 0.041061592388582875, 0.03655483224837256, 0.03605408112168253, 0.03505257886830245, 0.03455182774161242, 0.02954431647471207, 0.03204807210816224, 0.03355032548823235, 0.9474211316975463, 0.8397596394591887, 0.03505257886830245, 0.03455182774161242, 0.9248873309964948, 0.9464196294441662, 0.9399098647971958, 0.9243865798698047, 0.035553329994992486, 0.02553830746119179, 0.02503755633450175, 0.024036054081121683, 0.024036054081121683, 0.023535302954431646, 0.024036054081121683, 0.024036054081121683, 0.023535302954431646, 0.16124186279419128, 0.16474712068102154, 0.15623435152729093, 0.09814722083124687, 0.19028542814221333, 0.8347521281922884, 0.23435152729093642, 0.22633950926389584, 0.36054081121682524, 0.37055583375062595, 0.9233850776164246, 0.942914371557336, 0.8668002003004507, 0.12418627941912869, 0.021532298447671506, 0.022033049574361543, 0.02103154732098147, 0.020530796194291438, 0.02103154732098147, 0.020530796194291438, 0.01902854281422133, 0.018027040560841263, 0.07260891337005508, 0.02303455182774161, 0.8878317476214321, 0.02503755633450175, 0.023535302954431646, 0.02704056084126189, 0.023535302954431646, 0.023535302954431646, 0.023535302954431646, 0.023535302954431646, 0.024036054081121683, 0.024036054081121683, 0.026039058587881823, 0.026539809714571858, 0.02754131196795193, 0.028042063094641963, 0.028042063094641963, 0.028542814221331998, 0.02904356534802203, 0.02954431647471207, 0.030045067601402103, 0.15773660490736105, 0.8813219829744617, 0.9208813219829745, 0.8878317476214321, 0.8808212318477716, 0.18527791687531298, 0.10816224336504757, 0.44466700050075114, 0.09364046069103656, 0.0500751126690035, 0.05257886830245368, 0.05408112168252378, 0.06259389083625438, 0.8748122183274912, 0.06259389083625438, 0.06309464196294441, 0.06559839759639459, 0.06760140210315473, 0.06910365548322484, 0.07411116675012519, 0.08062093139709564, 0.08162243365047571, 0.08212318477716575, 0.08612919379068602, 0.10465698547821732, 0.12919379068602904, 0.1812719078617927, 0.22483725588382575, 0.24737105658487732, 0.3129694541812719, 0.5047571357035553, 0.7796695042563846], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Collagen.gap.json b/pfam_gap_rates/Collagen.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8bf1f7d1d27900f9e752492bd2c33d4a7164a312
--- /dev/null
+++ b/pfam_gap_rates/Collagen.gap.json
@@ -0,0 +1 @@
+{"family": "Collagen", "n_seqs": 5000, "length": 59, "gap_rates": [0.3966, 0.354, 0.2478, 0.1212, 0.1138, 0.0816, 0.0456, 0.0418, 0.03, 0.0182, 0.0176, 0.014, 0.0078, 0.0082, 0.0062, 0.0028, 0.0036, 0.0038, 0.0012, 0.0012, 0.0014, 0.0016, 0.0016, 0.003, 0.0008, 0.0008, 0.0026, 0.001, 0.0012, 0.0014, 0.0006, 0.0008, 0.0002, 0.0004, 0.0006, 0.0012, 0.0006, 0.0022, 0.0018, 0.0022, 0.0036, 0.005, 0.0044, 0.0066, 0.008, 0.008, 0.012, 0.0158, 0.017, 0.031, 0.042, 0.0454, 0.0716, 0.0976, 0.1182, 0.1968, 0.272, 0.347, 0.6358], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Complex1_51K.gap.json b/pfam_gap_rates/Complex1_51K.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c7b2ffc09c4e96dab27940b0594d4345fca9616
--- /dev/null
+++ b/pfam_gap_rates/Complex1_51K.gap.json
@@ -0,0 +1 @@
+{"family": "Complex1_51K", "n_seqs": 3123, "length": 179, "gap_rates": [0.22638488632724943, 0.11015049631764329, 0.042907460774895934, 0.0281780339417227, 0.025616394492475183, 0.024975984630163303, 0.024655779699007365, 0.024335574767851424, 0.024015369836695485, 0.024015369836695485, 0.024335574767851424, 0.024015369836695485, 0.024655779699007365, 0.023695164905539544, 0.023054755043227664, 0.023054755043227664, 0.022734550112071726, 0.022414345180915785, 0.022094140249759846, 0.021773935318603905, 0.021133525456292025, 0.021133525456292025, 0.020172910662824207, 0.01985270573166827, 0.019532500800512328, 0.13256484149855907, 0.14377201408901696, 0.055075248158821644, 0.34261927633685557, 0.8933717579250721, 0.9452449567723343, 0.9343579891130324, 0.7540826128722382, 0.28370156900416266, 0.04931155939801473, 0.01504963176432917, 0.01440922190201729, 0.01440922190201729, 0.01408901697086135, 0.01440922190201729, 0.01440922190201729, 0.01472942683317323, 0.01408901697086135, 0.01504963176432917, 0.01472942683317323, 0.01440922190201729, 0.01440922190201729, 0.01408901697086135, 0.01440922190201729, 0.012808197246237591, 0.012808197246237591, 0.012808197246237591, 0.013128402177393531, 0.013448607108549471, 0.010886967659301952, 0.010886967659301952, 0.010886967659301952, 0.011207172590457892, 0.010886967659301952, 0.010886967659301952, 0.010566762728146013, 0.010566762728146013, 0.010566762728146013, 0.010246557796990073, 0.010246557796990073, 0.009606147934678195, 0.009606147934678195, 0.009926352865834135, 0.009606147934678195, 0.010246557796990073, 0.010886967659301952, 0.010886967659301952, 0.010886967659301952, 0.010246557796990073, 0.009606147934678195, 0.010886967659301952, 0.010886967659301952, 0.010246557796990073, 0.010246557796990073, 0.010246557796990073, 0.010246557796990073, 0.010886967659301952, 0.010886967659301952, 0.011207172590457892, 0.01408901697086135, 0.023374959974383606, 0.01985270573166827, 0.01536983669548511, 0.01504963176432917, 0.01633045148895293, 0.01440922190201729, 0.013448607108549471, 0.012487992315081652, 0.012487992315081652, 0.013128402177393531, 0.012808197246237591, 0.013128402177393531, 0.013448607108549471, 0.013128402177393531, 0.01536983669548511, 0.025296189561319245, 0.06628242074927954, 0.2616074287544028, 0.27249439641370476, 0.26641050272174194, 0.29010566762728146, 0.3371757925072046, 0.34774255523535064, 0.3506243996157541, 0.35190521934037783, 0.3749599743836055, 0.351264809478066, 0.3490233749599744, 0.3461415305795709, 0.2968299711815562, 0.28594300352225427, 0.24399615754082613, 0.2052513608709574, 0.013768812039705411, 0.012487992315081652, 0.012167787383925712, 0.012167787383925712, 0.012167787383925712, 0.011847582452769772, 0.011847582452769772, 0.011527377521613832, 0.011847582452769772, 0.012167787383925712, 0.012167787383925712, 0.012167787383925712, 0.012487992315081652, 0.012808197246237591, 0.013128402177393531, 0.013128402177393531, 0.01440922190201729, 0.01472942683317323, 0.01504963176432917, 0.01504963176432917, 0.01504963176432917, 0.01536983669548511, 0.01536983669548511, 0.01601024655779699, 0.01665065642010887, 0.2804995196926033, 0.01793147614473263, 0.01761127121357669, 0.01857188600704451, 0.020172910662824207, 0.021133525456292025, 0.024015369836695485, 0.023054755043227664, 0.020493115593980146, 0.34197886647454373, 0.3390970220941403, 0.020813320525136087, 0.022094140249759846, 0.022734550112071726, 0.022094140249759846, 0.021773935318603905, 0.28498238872878645, 0.28530259365994237, 0.9458853666346462, 0.9478065962215818, 0.2856227985910983, 0.28530259365994237, 0.2846621837976305, 0.023054755043227664, 0.023054755043227664, 0.023695164905539544, 0.023695164905539544, 0.023695164905539544, 0.024015369836695485, 0.024015369836695485, 0.024335574767851424, 0.025296189561319245, 0.07236631444124239, 0.1786743515850144, 0.25456292026897215, 0.9167467178994556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Complex1_LYR.gap.json b/pfam_gap_rates/Complex1_LYR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51015d393f23a4421a85a9227066c8d5e7b8c210
--- /dev/null
+++ b/pfam_gap_rates/Complex1_LYR.gap.json
@@ -0,0 +1 @@
+{"family": "Complex1_LYR", "n_seqs": 1620, "length": 71, "gap_rates": [0.658641975308642, 0.27469135802469136, 0.14012345679012345, 0.09444444444444444, 0.06296296296296296, 0.05123456790123457, 0.043827160493827164, 0.04259259259259259, 0.03827160493827161, 0.03148148148148148, 0.030246913580246913, 0.028395061728395062, 0.027777777777777776, 0.027160493827160494, 0.9154320987654321, 0.09753086419753086, 0.09320987654320988, 0.03209876543209877, 0.02345679012345679, 0.03148148148148148, 0.025925925925925925, 0.02345679012345679, 0.7845679012345679, 0.8574074074074074, 0.9395061728395062, 0.9012345679012346, 0.8265432098765432, 0.65, 0.26728395061728394, 0.08765432098765433, 0.025925925925925925, 0.020370370370370372, 0.014814814814814815, 0.928395061728395, 0.9351851851851852, 0.9253086419753086, 0.012962962962962963, 0.006790123456790123, 0.005555555555555556, 0.004320987654320987, 0.003703703703703704, 0.0024691358024691358, 0.0030864197530864196, 0.0024691358024691358, 0.0030864197530864196, 0.005555555555555556, 0.008641975308641974, 0.015432098765432098, 0.020987654320987655, 0.8944444444444445, 0.8876543209876543, 0.040123456790123455, 0.03641975308641975, 0.033950617283950615, 0.03580246913580247, 0.040740740740740744, 0.04691358024691358, 0.05925925925925926, 0.05432098765432099, 0.056790123456790124, 0.06049382716049383, 0.07469135802469136, 0.0808641975308642, 0.09259259259259259, 0.10123456790123457, 0.1345679012345679, 0.21790123456790123, 0.28271604938271605, 0.36419753086419754, 0.5049382716049383, 0.8277777777777777], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cornifin.gap.json b/pfam_gap_rates/Cornifin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f858ab29b615746a75f549805a95621514de3ab6
--- /dev/null
+++ b/pfam_gap_rates/Cornifin.gap.json
@@ -0,0 +1 @@
+{"family": "Cornifin", "n_seqs": 182, "length": 135, "gap_rates": [0.8846153846153846, 0.8681318681318682, 0.8681318681318682, 0.8516483516483516, 0.8241758241758241, 0.8186813186813187, 0.8076923076923077, 0.7912087912087912, 0.7857142857142857, 0.7802197802197802, 0.7747252747252747, 0.7747252747252747, 0.7252747252747253, 0.7032967032967034, 0.6813186813186813, 0.6538461538461539, 0.6373626373626373, 0.6703296703296703, 0.5604395604395604, 0.5494505494505495, 0.5164835164835165, 0.4945054945054945, 0.4340659340659341, 0.3791208791208791, 0.3241758241758242, 0.29120879120879123, 0.24175824175824176, 0.23626373626373626, 0.19230769230769232, 0.13186813186813187, 0.11538461538461539, 0.10989010989010989, 0.0989010989010989, 0.08241758241758242, 0.04945054945054945, 0.04395604395604396, 0.038461538461538464, 0.038461538461538464, 0.03296703296703297, 0.03296703296703297, 0.027472527472527472, 0.027472527472527472, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.038461538461538464, 0.038461538461538464, 0.04395604395604396, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04395604395604396, 0.04395604395604396, 0.04395604395604396, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.06593406593406594, 0.06593406593406594, 0.08791208791208792, 0.08241758241758242, 0.08241758241758242, 0.08791208791208792, 0.08791208791208792, 0.09340659340659341, 0.10989010989010989, 0.11538461538461539, 0.14835164835164835, 0.13736263736263737, 0.14835164835164835, 0.14285714285714285, 0.13736263736263737, 0.13736263736263737, 0.13736263736263737, 0.13736263736263737, 0.15384615384615385, 0.15934065934065933, 0.15934065934065933, 0.17032967032967034, 0.1813186813186813, 0.1813186813186813, 0.19230769230769232, 0.2032967032967033, 0.22527472527472528, 0.24175824175824176, 0.24175824175824176, 0.23626373626373626, 0.23076923076923078, 0.24725274725274726, 0.26373626373626374, 0.26373626373626374, 0.29120879120879123, 0.31868131868131866, 0.34615384615384615, 0.37362637362637363, 0.37362637362637363, 0.4010989010989011, 0.4230769230769231, 0.4945054945054945, 0.5439560439560439, 0.6263736263736264, 0.6758241758241759, 0.7857142857142857, 0.8076923076923077, 0.8406593406593407, 0.8461538461538461, 0.8681318681318682, 0.8791208791208791, 0.8901098901098901, 0.9010989010989011, 0.9010989010989011, 0.9010989010989011, 0.9120879120879121, 0.9175824175824175], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CotH.gap.json b/pfam_gap_rates/CotH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6d1c0f27e977a47dabd0532b1967fd9b5b28038
--- /dev/null
+++ b/pfam_gap_rates/CotH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CotJB.gap.json b/pfam_gap_rates/CotJB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e1609ac6589ce3efed1706c41aeedfd4795e594
--- /dev/null
+++ b/pfam_gap_rates/CotJB.gap.json
@@ -0,0 +1 @@
+{"family": "CotJB", "n_seqs": 353, "length": 79, "gap_rates": [0.8101983002832861, 0.2096317280453258, 0.0906515580736544, 0.019830028328611898, 0.0113314447592068, 0.0056657223796034, 0.0056657223796034, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0084985835694051, 0.830028328611898, 0.9490084985835694, 0.44192634560906513, 0.14447592067988668, 0.053824362606232294, 0.014164305949008499, 0.0056657223796034, 0.0028328611898017, 0.0056657223796034, 0.0028328611898017, 0.0084985835694051, 0.0056657223796034, 0.0056657223796034, 0.0169971671388102, 0.019830028328611898, 0.053824362606232294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cpn10.gap.json b/pfam_gap_rates/Cpn10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c1955cf4474d1063eb97cbb4d33d13f8b8f96e0
--- /dev/null
+++ b/pfam_gap_rates/Cpn10.gap.json
@@ -0,0 +1 @@
+{"family": "Cpn10", "n_seqs": 2982, "length": 97, "gap_rates": [0.5714285714285714, 0.08081824279007378, 0.0499664654594232, 0.03621730382293763, 0.031857813547954396, 0.029845741113346747, 0.02716297786720322, 0.025486250838363516, 0.02481556002682763, 0.022803487592219986, 0.022468142186452045, 0.022132796780684104, 0.021797451374916163, 0.029510395707578806, 0.028169014084507043, 0.02079141515761234, 0.019450033534540577, 0.017773306505700873, 0.01676727028839705, 0.01609657947686117, 0.01609657947686117, 0.01609657947686117, 0.01609657947686117, 0.01609657947686117, 0.014755197853789403, 0.01374916163648558, 0.014084507042253521, 0.9382964453386988, 0.014755197853789403, 0.013078470824949699, 0.015090543259557344, 0.025821596244131457, 0.018108651911468814, 0.9450033534540577, 0.9255533199195171, 0.011066398390342052, 0.010731052984574111, 0.010731052984574111, 0.01006036217303823, 0.009389671361502348, 0.01006036217303823, 0.01006036217303823, 0.009725016767270288, 0.009725016767270288, 0.009725016767270288, 0.009054325955734407, 0.008718980549966466, 0.09825620389000671, 0.09557344064386318, 0.10395707578806171, 0.11904761904761904, 0.16867873910127432, 0.24681421864520456, 0.16465459423205903, 0.1579476861167002, 0.12575452716297786, 0.10093896713615023, 0.05868544600938967, 0.02649228705566734, 0.018779342723004695, 0.012072434607645875, 0.011401743796109993, 0.011737089201877934, 0.012407780013413815, 0.012743125419181758, 0.013078470824949699, 0.012743125419181758, 0.013078470824949699, 0.014084507042253521, 0.014084507042253521, 0.014419852448021462, 0.01609657947686117, 0.01643192488262911, 0.01609657947686117, 0.015761234071093227, 0.01643192488262911, 0.01676727028839705, 0.017773306505700873, 0.018779342723004695, 0.903755868544601, 0.018779342723004695, 0.02012072434607646, 0.02012072434607646, 0.023474178403755867, 0.023474178403755867, 0.023809523809523808, 0.02481556002682763, 0.02481556002682763, 0.025486250838363516, 0.025821596244131457, 0.02649228705566734, 0.028504359490274984, 0.029510395707578806, 0.030181086519114688, 0.0409121395036888, 0.0539906103286385, 0.3423876592890677], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Crystall.gap.json b/pfam_gap_rates/Crystall.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..caa79619b7c5103e4ad76a5629b6d061dde8951a
--- /dev/null
+++ b/pfam_gap_rates/Crystall.gap.json
@@ -0,0 +1 @@
+{"family": "Crystall", "n_seqs": 1136, "length": 92, "gap_rates": [0.3538732394366197, 0.09859154929577464, 0.06778169014084508, 0.0528169014084507, 0.04753521126760563, 0.04401408450704225, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.043133802816901406, 0.040492957746478875, 0.03873239436619718, 0.03609154929577465, 0.03433098591549296, 0.03345070422535211, 0.032570422535211266, 0.030809859154929578, 0.9198943661971831, 0.028169014084507043, 0.029049295774647887, 0.029049295774647887, 0.028169014084507043, 0.029049295774647887, 0.02640845070422535, 0.025528169014084508, 0.022887323943661973, 0.25440140845070425, 0.238556338028169, 0.028169014084507043, 0.03609154929577465, 0.043133802816901406, 0.16901408450704225, 0.8741197183098591, 0.04137323943661972, 0.020246478873239437, 0.014084507042253521, 0.008802816901408451, 0.007042253521126761, 0.007922535211267605, 0.008802816901408451, 0.01232394366197183, 0.01056338028169014, 0.01056338028169014, 0.013204225352112676, 0.9348591549295775, 0.011443661971830986, 0.011443661971830986, 0.011443661971830986, 0.011443661971830986, 0.011443661971830986, 0.01056338028169014, 0.01056338028169014, 0.01232394366197183, 0.013204225352112676, 0.014084507042253521, 0.014084507042253521, 0.017605633802816902, 0.02112676056338028, 0.023767605633802816, 0.030809859154929578, 0.04225352112676056, 0.9436619718309859, 0.948943661971831, 0.9463028169014085, 0.9401408450704225, 0.06690140845070422, 0.05457746478873239, 0.05985915492957746, 0.06954225352112677, 0.06954225352112677, 0.06954225352112677, 0.0721830985915493, 0.07482394366197183, 0.08274647887323944, 0.11795774647887323, 0.11355633802816902, 0.835387323943662, 0.9436619718309859, 0.8036971830985915, 0.15845070422535212, 0.17341549295774647, 0.12235915492957747, 0.1056338028169014, 0.11091549295774648, 0.11443661971830986, 0.11707746478873239, 0.11795774647887323, 0.12235915492957747, 0.136443661971831, 0.16901408450704225, 0.30985915492957744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Csm1.gap.json b/pfam_gap_rates/Csm1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acb78381e7e9215d10a91f9d837da56656c0628e
--- /dev/null
+++ b/pfam_gap_rates/Csm1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CstA_5TM.gap.json b/pfam_gap_rates/CstA_5TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..435c310e9d5470036b1bd5262a2c4119d1a2b4cc
--- /dev/null
+++ b/pfam_gap_rates/CstA_5TM.gap.json
@@ -0,0 +1 @@
+{"family": "CstA_5TM", "n_seqs": 950, "length": 147, "gap_rates": [0.7957894736842105, 0.5031578947368421, 0.1736842105263158, 0.04631578947368421, 0.015789473684210527, 0.010526315789473684, 0.009473684210526316, 0.008421052631578947, 0.008421052631578947, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.007368421052631579, 0.007368421052631579, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.01368421052631579, 0.01263157894736842, 0.015789473684210527, 0.5957894736842105, 0.8189473684210526, 0.9094736842105263, 0.94, 0.9263157894736842, 0.8936842105263157, 0.6210526315789474, 0.41789473684210526, 0.034736842105263156, 0.16421052631578947, 0.9231578947368421, 0.9252631578947368, 0.9294736842105263, 0.9378947368421052, 0.9273684210526316, 0.9252631578947368, 0.92, 0.14105263157894737, 0.037894736842105266, 0.015789473684210527, 0.88, 0.007368421052631579, 0.008421052631578947, 0.7589473684210526, 0.010526315789473684, 0.008421052631578947, 0.008421052631578947, 0.010526315789473684, 0.007368421052631579, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.00631578947368421, 0.007368421052631579, 0.007368421052631579, 0.008421052631578947, 0.41789473684210526, 0.4010526315789474, 0.05157894736842105, 0.10421052631578948, 0.4589473684210526, 0.47157894736842104, 0.5757894736842105, 0.6989473684210527, 0.7073684210526315, 0.7294736842105263, 0.7263157894736842, 0.7031578947368421, 0.6947368421052632, 0.5031578947368421, 0.4673684210526316, 0.45789473684210524, 0.2305263157894737, 0.005263157894736842, 0.005263157894736842, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.008421052631578947, 0.007368421052631579, 0.00631578947368421, 0.005263157894736842, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.9178947368421052, 0.00631578947368421, 0.01263157894736842, 0.014736842105263158, 0.007368421052631579, 0.5905263157894737, 0.5610526315789474, 0.008421052631578947, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.007368421052631579, 0.009473684210526316, 0.009473684210526316, 0.009473684210526316, 0.009473684210526316, 0.009473684210526316, 0.01263157894736842, 0.024210526315789474, 0.1, 0.4515789473684211], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cthe_2159.gap.json b/pfam_gap_rates/Cthe_2159.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7132c50e16eff1d813da1e0d7477e0178322634c
--- /dev/null
+++ b/pfam_gap_rates/Cthe_2159.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ctr.gap.json b/pfam_gap_rates/Ctr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22e8b012d828b576dfdeb4e78e0418c6c97f2011
--- /dev/null
+++ b/pfam_gap_rates/Ctr.gap.json
@@ -0,0 +1 @@
+{"family": "Ctr", "n_seqs": 1076, "length": 188, "gap_rates": [0.41356877323420077, 0.30576208178438663, 0.2853159851301115, 0.2760223048327137, 0.27230483271375466, 0.2695167286245353, 0.26394052044609667, 0.2620817843866171, 0.25092936802973975, 0.23605947955390336, 0.6886617100371747, 0.2258364312267658, 0.22304832713754646, 0.22211895910780668, 0.22026022304832713, 0.21933085501858737, 0.21933085501858737, 0.2184014869888476, 0.2184014869888476, 0.2184014869888476, 0.2184014869888476, 0.21561338289962825, 0.21561338289962825, 0.20910780669144982, 0.2016728624535316, 0.2016728624535316, 0.2016728624535316, 0.2016728624535316, 0.2016728624535316, 0.2016728624535316, 0.2016728624535316, 0.20074349442379183, 0.19981412639405205, 0.19888475836431227, 0.19888475836431227, 0.1979553903345725, 0.1979553903345725, 0.1979553903345725, 0.19888475836431227, 0.19981412639405205, 0.1979553903345725, 0.1979553903345725, 0.1979553903345725, 0.38382899628252787, 0.379182156133829, 0.3828996282527881, 0.3819702602230483, 0.24628252788104088, 0.2527881040892193, 0.30947955390334575, 0.3104089219330855, 0.4479553903345725, 0.4395910780669145, 0.4516728624535316, 0.4879182156133829, 0.49256505576208176, 0.5055762081784386, 0.9117100371747212, 0.8262081784386617, 0.5446096654275093, 0.8438661710037175, 0.8819702602230484, 0.9070631970260223, 0.9144981412639405, 0.9451672862453532, 0.9265799256505576, 0.9079925650557621, 0.8968401486988847, 0.8578066914498141, 0.8271375464684015, 0.550185873605948, 0.5827137546468402, 0.5566914498141264, 0.5529739776951673, 0.5055762081784386, 0.4767657992565056, 0.3996282527881041, 0.3680297397769517, 0.3587360594795539, 0.34851301115241634, 0.34572490706319703, 0.34851301115241634, 0.3596654275092937, 0.3671003717472119, 0.4563197026022305, 0.5613382899628253, 0.5836431226765799, 0.5994423791821561, 0.6366171003717472, 0.6617100371747212, 0.7063197026022305, 0.7239776951672863, 0.75, 0.7592936802973977, 0.766728624535316, 0.6468401486988847, 0.7927509293680297, 0.8039033457249071, 0.8187732342007435, 0.8262081784386617, 0.8503717472118959, 0.879182156133829, 0.9070631970260223, 0.9163568773234201, 0.9284386617100372, 0.9395910780669146, 0.9460966542750929, 0.949814126394052, 0.9433085501858736, 0.9349442379182156, 0.9228624535315985, 0.912639405204461, 0.8977695167286245, 0.8671003717472119, 0.8336431226765799, 0.820631970260223, 0.8104089219330854, 0.7992565055762082, 0.7881040892193308, 0.5985130111524164, 0.5659851301115242, 0.5260223048327137, 0.49256505576208176, 0.46096654275092935, 0.43215613382899626, 0.4117100371747212, 0.3912639405204461, 0.37267657992565056, 0.3513011152416357, 0.3336431226765799, 0.32063197026022305, 0.30297397769516726, 0.29646840148698883, 0.3020446096654275, 0.30111524163568776, 0.2992565055762082, 0.30947955390334575, 0.3076208178438662, 0.2741635687732342, 0.8131970260223048, 0.9182156133828996, 0.9433085501858736, 0.8587360594795539, 0.6942379182156134, 0.5046468401486989, 0.16356877323420074, 0.15613382899628253, 0.15427509293680297, 0.14312267657992564, 0.14033457249070633, 0.13847583643122677, 0.137546468401487, 0.137546468401487, 0.1366171003717472, 0.13382899628252787, 0.13475836431226765, 0.13475836431226765, 0.13382899628252787, 0.13382899628252787, 0.13568773234200743, 0.13475836431226765, 0.13940520446096655, 0.14684014869888476, 0.14869888475836432, 0.15148698884758363, 0.15148698884758363, 0.1524163568773234, 0.15427509293680297, 0.15427509293680297, 0.15520446096654275, 0.15520446096654275, 0.15520446096654275, 0.15613382899628253, 0.1579925650557621, 0.15892193308550187, 0.15892193308550187, 0.15892193308550187, 0.15985130111524162, 0.1607806691449814, 0.16171003717472118, 0.16263940520446096, 0.16449814126394052, 0.17193308550185873, 0.17472118959107807, 0.17657992565055763, 0.18401486988847585, 0.21561338289962825, 0.3763940520446097], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cut8.gap.json b/pfam_gap_rates/Cut8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..102cc1309487df54270c85000b31a9b76bb1039c
--- /dev/null
+++ b/pfam_gap_rates/Cut8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CutC.gap.json b/pfam_gap_rates/CutC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eae737e6e6fed3ffc0c7f4ef3f77043750eddffa
--- /dev/null
+++ b/pfam_gap_rates/CutC.gap.json
@@ -0,0 +1 @@
+{"family": "CutC", "n_seqs": 755, "length": 212, "gap_rates": [0.8225165562913908, 0.3536423841059603, 0.12317880794701987, 0.11788079470198676, 0.11390728476821192, 0.11390728476821192, 0.10993377483443709, 0.10728476821192053, 0.10728476821192053, 0.10596026490066225, 0.10066225165562914, 0.09668874172185431, 0.09536423841059603, 0.09403973509933775, 0.08741721854304636, 0.08609271523178808, 0.0847682119205298, 0.0847682119205298, 0.0847682119205298, 0.08211920529801324, 0.08211920529801324, 0.08079470198675497, 0.08079470198675497, 0.08079470198675497, 0.08079470198675497, 0.08079470198675497, 0.08211920529801324, 0.08344370860927153, 0.0847682119205298, 0.08079470198675497, 0.08079470198675497, 0.07682119205298013, 0.07682119205298013, 0.07682119205298013, 0.07682119205298013, 0.07549668874172186, 0.07549668874172186, 0.07549668874172186, 0.07417218543046358, 0.07417218543046358, 0.07417218543046358, 0.07417218543046358, 0.0728476821192053, 0.07152317880794702, 0.0728476821192053, 0.07417218543046358, 0.13509933774834437, 0.8145695364238411, 0.8370860927152318, 0.7231788079470198, 0.07549668874172186, 0.0728476821192053, 0.07152317880794702, 0.06887417218543046, 0.06754966887417219, 0.06622516556291391, 0.06622516556291391, 0.06490066225165562, 0.05562913907284768, 0.05562913907284768, 0.05562913907284768, 0.05695364238410596, 0.06225165562913907, 0.059602649006622516, 0.060927152317880796, 0.0913907284768212, 0.08344370860927153, 0.08344370860927153, 0.05695364238410596, 0.054304635761589407, 0.054304635761589407, 0.054304635761589407, 0.054304635761589407, 0.054304635761589407, 0.054304635761589407, 0.05562913907284768, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.05033112582781457, 0.052980132450331126, 0.06225165562913907, 0.05827814569536424, 0.054304635761589407, 0.051655629139072845, 0.054304635761589407, 0.052980132450331126, 0.052980132450331126, 0.054304635761589407, 0.052980132450331126, 0.05562913907284768, 0.05695364238410596, 0.06622516556291391, 0.05827814569536424, 0.05562913907284768, 0.05695364238410596, 0.054304635761589407, 0.054304635761589407, 0.05695364238410596, 0.05562913907284768, 0.054304635761589407, 0.054304635761589407, 0.05827814569536424, 0.059602649006622516, 0.06357615894039735, 0.06225165562913907, 0.06225165562913907, 0.06622516556291391, 0.06490066225165562, 0.06754966887417219, 0.8847682119205298, 0.8741721854304636, 0.06622516556291391, 0.06887417218543046, 0.06490066225165562, 0.06622516556291391, 0.06622516556291391, 0.06622516556291391, 0.06754966887417219, 0.06622516556291391, 0.07019867549668875, 0.06887417218543046, 0.06887417218543046, 0.06887417218543046, 0.06887417218543046, 0.0728476821192053, 0.07019867549668875, 0.8582781456953642, 0.8543046357615894, 0.07019867549668875, 0.07019867549668875, 0.07019867549668875, 0.06754966887417219, 0.06754966887417219, 0.06622516556291391, 0.06622516556291391, 0.06754966887417219, 0.07019867549668875, 0.06754966887417219, 0.06754966887417219, 0.8609271523178808, 0.06357615894039735, 0.06357615894039735, 0.06490066225165562, 0.06490066225165562, 0.06622516556291391, 0.06754966887417219, 0.06754966887417219, 0.06622516556291391, 0.06622516556291391, 0.06754966887417219, 0.06622516556291391, 0.8980132450331125, 0.8821192052980132, 0.06887417218543046, 0.07152317880794702, 0.07152317880794702, 0.07682119205298013, 0.0781456953642384, 0.07417218543046358, 0.07549668874172186, 0.07549668874172186, 0.0781456953642384, 0.07947019867549669, 0.08079470198675497, 0.07947019867549669, 0.08079470198675497, 0.09801324503311258, 0.08741721854304636, 0.10198675496688742, 0.09536423841059603, 0.10198675496688742, 0.10331125827814569, 0.9470198675496688, 0.09536423841059603, 0.09271523178807947, 0.1337748344370861, 0.09271523178807947, 0.09006622516556291, 0.0913907284768212, 0.09536423841059603, 0.10066225165562914, 0.10066225165562914, 0.09933774834437085, 0.10066225165562914, 0.10066225165562914, 0.10066225165562914, 0.10066225165562914, 0.10198675496688742, 0.10198675496688742, 0.10463576158940398, 0.10596026490066225, 0.11390728476821192, 0.11920529801324503, 0.30993377483443707, 0.14304635761589404, 0.14437086092715232, 0.15364238410596026, 0.1576158940397351, 0.1629139072847682, 0.16556291390728478, 0.1695364238410596, 0.17880794701986755, 0.23576158940397351, 0.352317880794702, 0.5708609271523178], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyc-maltodext_C.gap.json b/pfam_gap_rates/Cyc-maltodext_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db775f284c3325b3965097bbf4206f2b1ab6e64d
--- /dev/null
+++ b/pfam_gap_rates/Cyc-maltodext_C.gap.json
@@ -0,0 +1 @@
+{"family": "Cyc-maltodext_C", "n_seqs": 124, "length": 78, "gap_rates": [0.31451612903225806, 0.04032258064516129, 0.03225806451612903, 0.03225806451612903, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.016129032258064516, 0.008064516129032258, 0.9435483870967742, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258, 0.008064516129032258, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.0, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.12903225806451613, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.9354838709677419, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.04032258064516129, 0.33064516129032256], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyclin_C_2.gap.json b/pfam_gap_rates/Cyclin_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6710c55a644002a33f67bab4ebc8d6036357b8ee
--- /dev/null
+++ b/pfam_gap_rates/Cyclin_C_2.gap.json
@@ -0,0 +1 @@
+{"family": "Cyclin_C_2", "n_seqs": 327, "length": 177, "gap_rates": [0.25382262996941896, 0.04281345565749235, 0.03058103975535168, 0.021406727828746176, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.021406727828746176, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.03363914373088685, 0.05198776758409786, 0.07033639143730887, 0.6941896024464832, 0.764525993883792, 0.7920489296636085, 0.8042813455657493, 0.8593272171253823, 0.8746177370030581, 0.8807339449541285, 0.9021406727828746, 0.9021406727828746, 0.9174311926605505, 0.9204892966360856, 0.9235474006116208, 0.9296636085626911, 0.9357798165137615, 0.9388379204892966, 0.9418960244648318, 0.9480122324159022, 0.9418960244648318, 0.9388379204892966, 0.9296636085626911, 0.926605504587156, 0.9235474006116208, 0.9174311926605505, 0.9143730886850153, 0.9021406727828746, 0.8929663608562691, 0.8776758409785933, 0.8654434250764526, 0.8318042813455657, 0.7981651376146789, 0.7767584097859327, 0.7217125382262997, 0.6788990825688074, 0.13761467889908258, 0.1437308868501529, 0.13761467889908258, 0.1712538226299694, 0.16819571865443425, 0.9418960244648318, 0.9204892966360856, 0.3486238532110092, 0.21406727828746178, 0.14984709480122324, 0.039755351681957186, 0.012232415902140673, 0.0061162079510703364, 0.0061162079510703364, 0.0030581039755351682, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7767584097859327, 0.0030581039755351682, 0.0030581039755351682, 0.0030581039755351682, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009174311926605505, 0.01529051987767584, 0.021406727828746176, 0.039755351681957186, 0.06422018348623854, 0.10703363914373089, 0.1162079510703364, 0.6116207951070336, 0.8103975535168195, 0.9418960244648318, 0.6422018348623854, 0.5902140672782875, 0.1651376146788991, 0.1743119266055046, 0.1712538226299694, 0.18654434250764526, 0.1926605504587156, 0.19877675840978593, 0.19877675840978593, 0.20795107033639143, 0.22629969418960244, 0.24464831804281345, 0.9235474006116208, 0.9327217125382263, 0.9418960244648318, 0.9235474006116208, 0.9235474006116208, 0.28440366972477066, 0.43119266055045874, 0.382262996941896, 0.3730886850152905, 0.3761467889908257, 0.40061162079510704, 0.7400611620795107, 0.672782874617737, 0.7706422018348624, 0.7981651376146789, 0.8501529051987767, 0.8593272171253823, 0.8685015290519877, 0.8746177370030581, 0.8807339449541285, 0.8868501529051988, 0.8929663608562691, 0.9021406727828746, 0.9204892966360856, 0.9296636085626911, 0.9418960244648318, 0.9418960244648318, 0.944954128440367, 0.9418960244648318, 0.9357798165137615, 0.926605504587156, 0.9174311926605505, 0.8990825688073395, 0.8929663608562691, 0.8837920489296636, 0.8776758409785933, 0.8715596330275229, 0.8654434250764526, 0.8532110091743119, 0.8318042813455657, 0.7798165137614679, 0.72782874617737, 0.6574923547400612, 0.6483180428134556, 0.6116207951070336, 0.3486238532110092, 0.3394495412844037, 0.3394495412844037, 0.3394495412844037, 0.3425076452599388, 0.3394495412844037, 0.3425076452599388, 0.3486238532110092, 0.3577981651376147, 0.3669724770642202, 0.3761467889908257, 0.42507645259938837, 0.45565749235474007, 0.5015290519877675, 0.5474006116207951, 0.764525993883792], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cys_Met_Meta_PP.gap.json b/pfam_gap_rates/Cys_Met_Meta_PP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91c56ff4e3552848fa8deb26f57ccb60e278bd22
--- /dev/null
+++ b/pfam_gap_rates/Cys_Met_Meta_PP.gap.json
@@ -0,0 +1 @@
+{"family": "Cys_Met_Meta_PP", "n_seqs": 5000, "length": 436, "gap_rates": [0.5738, 0.2508, 0.233, 0.2198, 0.211, 0.2048, 0.2012, 0.196, 0.1924, 0.1874, 0.1986, 0.1856, 0.3616, 0.9218, 0.1574, 0.1484, 0.1436, 0.1392, 0.1356, 0.134, 0.1322, 0.1316, 0.1314, 0.131, 0.1306, 0.1288, 0.1278, 0.127, 0.127, 0.127, 0.127, 0.1272, 0.4026, 0.3966, 0.3952, 0.3912, 0.3484, 0.4236, 0.9136, 0.9404, 0.9492, 0.9356, 0.4422, 0.4146, 0.1576, 0.1446, 0.1422, 0.1324, 0.123, 0.1176, 0.1144, 0.9388, 0.1126, 0.11, 0.11, 0.1096, 0.1098, 0.1094, 0.1088, 0.108, 0.1072, 0.1066, 0.1052, 0.1036, 0.1024, 0.1016, 0.1008, 0.1, 0.0998, 0.0962, 0.0956, 0.0956, 0.0956, 0.0952, 0.0952, 0.094, 0.1002, 0.0982, 0.0724, 0.0708, 0.0698, 0.0698, 0.07, 0.0702, 0.0702, 0.0692, 0.0692, 0.0694, 0.0692, 0.2922, 0.0746, 0.0742, 0.0724, 0.0738, 0.0742, 0.0722, 0.0738, 0.077, 0.0842, 0.0882, 0.0816, 0.0726, 0.072, 0.0728, 0.0704, 0.0684, 0.0682, 0.0678, 0.0684, 0.0682, 0.0682, 0.0682, 0.0696, 0.0688, 0.0694, 0.0704, 0.071, 0.0704, 0.0758, 0.0784, 0.0714, 0.076, 0.0762, 0.073, 0.0738, 0.0698, 0.0692, 0.0702, 0.0714, 0.0714, 0.0694, 0.0696, 0.0724, 0.9354, 0.11, 0.0876, 0.0764, 0.0744, 0.073, 0.074, 0.0776, 0.0836, 0.0834, 0.0812, 0.0866, 0.0784, 0.9462, 0.8904, 0.0708, 0.063, 0.0614, 0.0608, 0.0608, 0.0604, 0.0602, 0.06, 0.0598, 0.0598, 0.06, 0.0602, 0.0606, 0.0608, 0.0606, 0.06, 0.0608, 0.061, 0.0606, 0.0606, 0.061, 0.0606, 0.061, 0.0606, 0.0616, 0.0622, 0.0638, 0.0638, 0.0658, 0.064, 0.0626, 0.9292, 0.9088, 0.0612, 0.0604, 0.0604, 0.0602, 0.0598, 0.0598, 0.06, 0.0596, 0.0648, 0.0756, 0.0606, 0.0606, 0.063, 0.0602, 0.0602, 0.0586, 0.0608, 0.0594, 0.0588, 0.0616, 0.0842, 0.0594, 0.0588, 0.0584, 0.0584, 0.058, 0.0588, 0.059, 0.0588, 0.059, 0.0592, 0.0596, 0.0596, 0.0606, 0.0612, 0.0602, 0.0602, 0.0614, 0.062, 0.0616, 0.06, 0.0598, 0.0604, 0.0604, 0.0606, 0.1188, 0.1174, 0.0876, 0.5112, 0.1196, 0.0652, 0.0642, 0.0644, 0.0648, 0.0864, 0.1336, 0.0666, 0.0842, 0.0916, 0.0674, 0.671, 0.675, 0.6838, 0.6846, 0.6852, 0.6858, 0.6886, 0.69, 0.6906, 0.6944, 0.7056, 0.7106, 0.7112, 0.7124, 0.7154, 0.8466, 0.944, 0.9238, 0.7288, 0.7134, 0.7114, 0.7108, 0.71, 0.7042, 0.692, 0.6904, 0.6896, 0.686, 0.6856, 0.6848, 0.6844, 0.6834, 0.6726, 0.6676, 0.0638, 0.0632, 0.0628, 0.0628, 0.063, 0.0624, 0.0622, 0.062, 0.0614, 0.0616, 0.062, 0.062, 0.0622, 0.0622, 0.0622, 0.062, 0.062, 0.062, 0.0616, 0.0622, 0.0624, 0.0626, 0.0628, 0.0626, 0.0628, 0.061, 0.0612, 0.0614, 0.0614, 0.061, 0.0606, 0.0606, 0.0608, 0.0606, 0.0612, 0.0606, 0.0614, 0.0616, 0.062, 0.0624, 0.0626, 0.0632, 0.0678, 0.0684, 0.0954, 0.094, 0.0678, 0.068, 0.0648, 0.064, 0.0642, 0.0648, 0.0918, 0.0932, 0.0938, 0.095, 0.0946, 0.0982, 0.1028, 0.1072, 0.1038, 0.0996, 0.0972, 0.0956, 0.0944, 0.094, 0.0926, 0.9186, 0.0902, 0.9398, 0.0686, 0.0674, 0.0682, 0.0652, 0.9486, 0.7614, 0.0644, 0.0644, 0.064, 0.0642, 0.0644, 0.0644, 0.0642, 0.064, 0.064, 0.277, 0.9318, 0.8758, 0.1086, 0.0758, 0.07, 0.0658, 0.0652, 0.0656, 0.0652, 0.065, 0.065, 0.0648, 0.0654, 0.067, 0.068, 0.0804, 0.0752, 0.065, 0.0644, 0.0642, 0.0638, 0.0638, 0.0642, 0.065, 0.0664, 0.067, 0.0698, 0.0746, 0.088, 0.0846, 0.0826, 0.0908, 0.1016, 0.112, 0.1188, 0.1204, 0.1242, 0.1206, 0.124, 0.1408, 0.134, 0.1396, 0.1432, 0.1452, 0.1242, 0.1022, 0.0926, 0.0924, 0.0922, 0.1052, 0.0972, 0.0788, 0.072, 0.068, 0.0674, 0.0678, 0.0682, 0.069, 0.0692, 0.0718, 0.075, 0.0776, 0.0808, 0.0814, 0.0818, 0.0822, 0.0828, 0.0834, 0.0838, 0.0838, 0.0848, 0.0894, 0.0916, 0.1018, 0.7474], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cys_rich_CPCC.gap.json b/pfam_gap_rates/Cys_rich_CPCC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..779017dbd79943370a9f9a787e788c7eac0b7cfb
--- /dev/null
+++ b/pfam_gap_rates/Cys_rich_CPCC.gap.json
@@ -0,0 +1 @@
+{"family": "Cys_rich_CPCC", "n_seqs": 102, "length": 80, "gap_rates": [0.6470588235294118, 0.09803921568627451, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.0784313725490196, 0.8627450980392157, 0.8627450980392157, 0.09803921568627451, 0.08823529411764706, 0.09803921568627451, 0.5294117647058824, 0.7156862745098039, 0.12745098039215685, 0.08823529411764706, 0.0392156862745098, 0.06862745098039216, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.16666666666666666, 0.9019607843137255, 0.17647058823529413, 0.12745098039215685, 0.06862745098039216, 0.029411764705882353, 0.058823529411764705, 0.029411764705882353, 0.0392156862745098, 0.0196078431372549, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.7549019607843137, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.049019607843137254, 0.058823529411764705, 0.058823529411764705, 0.06862745098039216, 0.14705882352941177, 0.2549019607843137, 0.2549019607843137, 0.27450980392156865, 0.27450980392156865, 0.28431372549019607, 0.28431372549019607, 0.3235294117647059, 0.3137254901960784, 0.3137254901960784, 0.3235294117647059, 0.3333333333333333, 0.3333333333333333, 0.3627450980392157, 0.37254901960784315, 0.37254901960784315, 0.39215686274509803, 0.4411764705882353, 0.49019607843137253, 0.6176470588235294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cys_rich_CWC.gap.json b/pfam_gap_rates/Cys_rich_CWC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6dd16c8ec573ed3226049a8077c0dc2a0e3ca0a1
--- /dev/null
+++ b/pfam_gap_rates/Cys_rich_CWC.gap.json
@@ -0,0 +1 @@
+{"family": "Cys_rich_CWC", "n_seqs": 109, "length": 58, "gap_rates": [0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.045871559633027525, 0.045871559633027525, 0.03669724770642202, 0.045871559633027525, 0.03669724770642202, 0.5871559633027523, 0.5779816513761468, 0.5137614678899083, 0.926605504587156, 0.9357798165137615, 0.9357798165137615, 0.8532110091743119, 0.07339449541284404, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06422018348623854, 0.9357798165137615, 0.9357798165137615, 0.10091743119266056, 0.09174311926605505, 0.06422018348623854, 0.045871559633027525, 0.027522935779816515, 0.027522935779816515, 0.03669724770642202, 0.027522935779816515, 0.03669724770642202, 0.027522935779816515, 0.5229357798165137, 0.47706422018348627, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009174311926605505, 0.5779816513761468], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cys_rich_VLP.gap.json b/pfam_gap_rates/Cys_rich_VLP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1e2789420db9c9a52913990ad49117d798b4f70
--- /dev/null
+++ b/pfam_gap_rates/Cys_rich_VLP.gap.json
@@ -0,0 +1 @@
+{"family": "Cys_rich_VLP", "n_seqs": 133, "length": 59, "gap_rates": [0.48872180451127817, 0.15789473684210525, 0.06015037593984962, 0.03759398496240601, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.015037593984962405, 0.42105263157894735, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.7819548872180451, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.21052631578947367, 0.19548872180451127, 0.23308270676691728, 0.23308270676691728, 0.05263157894736842, 0.022556390977443608, 0.015037593984962405, 0.015037593984962405, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.7443609022556391, 0.015037593984962405, 0.7894736842105263, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.03759398496240601, 0.045112781954887216, 0.19548872180451127], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyt-b5.gap.json b/pfam_gap_rates/Cyt-b5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b72b89d16e161c3f9ae6e6643f169ac3a2e5c6b
--- /dev/null
+++ b/pfam_gap_rates/Cyt-b5.gap.json
@@ -0,0 +1 @@
+{"family": "Cyt-b5", "n_seqs": 5000, "length": 104, "gap_rates": [0.5496, 0.3116, 0.1972, 0.1608, 0.1466, 0.1386, 0.1296, 0.1214, 0.113, 0.9492, 0.9268, 0.0928, 0.0754, 0.0638, 0.8208, 0.9162, 0.7758, 0.0474, 0.041, 0.0362, 0.028, 0.0378, 0.0226, 0.0202, 0.0176, 0.0168, 0.0122, 0.0118, 0.0114, 0.0112, 0.0102, 0.0192, 0.0106, 0.008, 0.9464, 0.027, 0.0138, 0.0062, 0.1696, 0.9392, 0.9348, 0.0126, 0.0088, 0.0564, 0.0164, 0.023, 0.01, 0.0088, 0.0084, 0.0086, 0.0088, 0.0102, 0.0118, 0.0304, 0.016, 0.0162, 0.0174, 0.0194, 0.0204, 0.0266, 0.0346, 0.039, 0.4122, 0.8262, 0.9034, 0.7878, 0.0768, 0.0926, 0.0902, 0.0978, 0.4516, 0.1646, 0.8914, 0.8942, 0.8972, 0.903, 0.9068, 0.9144, 0.9182, 0.9214, 0.924, 0.9296, 0.9226, 0.9196, 0.917, 0.9102, 0.904, 0.9, 0.8966, 0.8926, 0.887, 0.1888, 0.2452, 0.2478, 0.3252, 0.2864, 0.288, 0.8816, 0.2742, 0.2792, 0.285, 0.297, 0.3392, 0.4182], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytidylate_kin2.gap.json b/pfam_gap_rates/Cytidylate_kin2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce5449889e19c5a71c2472f030e4bd1f87acded8
--- /dev/null
+++ b/pfam_gap_rates/Cytidylate_kin2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_B_C.gap.json b/pfam_gap_rates/Cytochrom_B_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6ef690d791fba686cfd6b354340e3cb33988f8f
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_B_C.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrom_B_C", "n_seqs": 996, "length": 156, "gap_rates": [0.3072289156626506, 0.11044176706827309, 0.10341365461847389, 0.10341365461847389, 0.09738955823293173, 0.0963855421686747, 0.0893574297188755, 0.0823293172690763, 0.07931726907630522, 0.07630522088353414, 0.07028112449799197, 0.02710843373493976, 0.02710843373493976, 0.025100401606425703, 0.02610441767068273, 0.02610441767068273, 0.02610441767068273, 0.02610441767068273, 0.025100401606425703, 0.025100401606425703, 0.025100401606425703, 0.023092369477911646, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.01706827309236948, 0.7720883534136547, 0.7921686746987951, 0.8875502008032129, 0.9026104417670683, 0.8684738955823293, 0.7841365461847389, 0.7580321285140562, 0.020080321285140562, 0.8112449799196787, 0.8192771084337349, 0.856425702811245, 0.8684738955823293, 0.8694779116465864, 0.8734939759036144, 0.8785140562248996, 0.8955823293172691, 0.8965863453815262, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.9437751004016064, 0.8965863453815262, 0.8845381526104418, 0.8755020080321285, 0.8714859437751004, 0.8684738955823293, 0.856425702811245, 0.856425702811245, 0.8162650602409639, 0.8042168674698795, 0.01606425702811245, 0.018072289156626505, 0.01606425702811245, 0.023092369477911646, 0.018072289156626505, 0.020080321285140562, 0.020080321285140562, 0.02108433734939759, 0.018072289156626505, 0.9246987951807228, 0.02108433734939759, 0.02108433734939759, 0.023092369477911646, 0.019076305220883535, 0.018072289156626505, 0.01706827309236948, 0.020080321285140562, 0.024096385542168676, 0.025100401606425703, 0.024096385542168676, 0.024096385542168676, 0.02610441767068273, 0.02610441767068273, 0.02710843373493976, 0.028112449799196786, 0.029116465863453816, 0.03112449799196787, 0.03413654618473896, 0.03313253012048193, 0.03614457831325301, 0.03413654618473896, 0.035140562248995984, 0.030120481927710843, 0.030120481927710843, 0.536144578313253, 0.060240963855421686, 0.040160642570281124, 0.040160642570281124, 0.04116465863453815, 0.0391566265060241, 0.045180722891566265, 0.04216867469879518, 0.045180722891566265, 0.045180722891566265, 0.04919678714859438, 0.050200803212851405, 0.04919678714859438, 0.050200803212851405, 0.05321285140562249, 0.0572289156626506, 0.05823293172690763, 0.06124497991967871, 0.06827309236947791, 0.07429718875502007, 0.09136546184738956, 0.10843373493975904, 0.13353413654618473, 0.1817269076305221, 0.20883534136546184, 0.2580321285140562, 0.2891566265060241, 0.3152610441767068, 0.357429718875502, 0.3704819277108434, 0.38052208835341367, 0.3865461847389558, 0.3895582329317269, 0.39156626506024095, 0.39357429718875503, 0.39959839357429716, 0.4046184738955823, 0.4066265060240964, 0.4066265060240964, 0.4106425702811245, 0.4206827309236948, 0.45180722891566266], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_C1.gap.json b/pfam_gap_rates/Cytochrom_C1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cd25413fe633d747dc396d25c9d6952a2a0e357
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_C1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_C_2.gap.json b/pfam_gap_rates/Cytochrom_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eca41ecc2640d1e97816eba39215c12e2f5cb50e
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_C_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/D123.gap.json b/pfam_gap_rates/D123.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b03644710651743e7cab5d6c71502cef7fc43b84
--- /dev/null
+++ b/pfam_gap_rates/D123.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DA1-like.gap.json b/pfam_gap_rates/DA1-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09dbf6c6d9c61acecf1d5bb9b96bcc3d4680307c
--- /dev/null
+++ b/pfam_gap_rates/DA1-like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DALR_1.gap.json b/pfam_gap_rates/DALR_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27b589297320bf59024f62f26c90e5ad51e60ba6
--- /dev/null
+++ b/pfam_gap_rates/DALR_1.gap.json
@@ -0,0 +1 @@
+{"family": "DALR_1", "n_seqs": 3649, "length": 136, "gap_rates": [0.26527815839956154, 0.2101945738558509, 0.1797752808988764, 0.08194025760482324, 0.056179775280898875, 0.043299534118936694, 0.037270485064401206, 0.037270485064401206, 0.03672238969580707, 0.03617429432721293, 0.03507810359002467, 0.033981912852836395, 0.033981912852836395, 0.03672238969580707, 0.036996437380104136, 0.03507810359002467, 0.04138120032885722, 0.043573581803233764, 0.040010961907371884, 0.1145519320361743, 0.1304466977254042, 0.12195121951219512, 0.13757193751712798, 0.0797478761304467, 0.046588106330501505, 0.03918881885448068, 0.07344477939161415, 0.07947382844614963, 0.11071526445601534, 0.6870375445327487, 0.8161140038366675, 0.894765689229926, 0.9416278432447246, 0.9180597423951767, 0.8643463962729515, 0.7467799397095094, 0.5935872841874487, 0.32282817210194575, 0.08440668676349684, 0.028226911482597972, 0.01918333790079474, 0.013154288846259249, 0.00959166895039737, 0.009043573581803233, 0.008495478213209099, 0.008769525897506167, 0.008769525897506167, 0.008495478213209099, 0.008495478213209099, 0.008495478213209099, 0.007947382844614962, 0.00822143052891203, 0.007673335160317895, 0.006851192107426692, 0.006303096738832557, 0.006303096738832557, 0.00959166895039737, 0.009043573581803233, 0.009317621266100301, 0.00822143052891203, 0.007947382844614962, 0.010139764318991504, 0.009865716634694436, 0.00959166895039737, 0.007947382844614962, 0.012058098109070978, 0.010413812003288572, 0.007947382844614962, 0.0057550013702384216, 0.004932858317347218, 0.004658810633050151, 0.004932858317347218, 0.004658810633050151, 0.004384762948753083, 0.004384762948753083, 0.004658810633050151, 0.004658810633050151, 0.004384762948753083, 0.004384762948753083, 0.004658810633050151, 0.005206906001644286, 0.005480953685941353, 0.005480953685941353, 0.006029049054535489, 0.006303096738832557, 0.9323102219786242, 0.9440942724033982, 0.9454645108248835, 0.9451904631405864, 0.9369690326116744, 0.931488078925733, 0.006851192107426692, 0.006851192107426692, 0.007673335160317895, 0.00822143052891203, 0.008769525897506167, 0.009865716634694436, 0.013428336530556317, 0.016168813373526995, 0.017265004110715264, 0.018635242532200603, 0.11071526445601534, 0.09016168813373528, 0.91120855028775, 0.9139490271307208, 0.8953137845985202, 0.5782406138668128, 0.03069334064127158, 0.023568100849547823, 0.01534667032063579, 0.014524527267744588, 0.014798574952041656, 0.014798574952041656, 0.015072622636338722, 0.01534667032063579, 0.018361194847903536, 0.021923814743765414, 0.03096738832556865, 0.052891203069334064, 0.08057001918333791, 0.09975335708413263, 0.13949027130720745, 0.1721019457385585, 0.20169909564264182, 0.2101945738558509, 0.214579336804604, 0.2203343381748424, 0.2222526719649219, 0.2230748150178131, 0.22362291038640725, 0.2263633872293779, 0.22828172101945737, 0.23102219786242806, 0.23622910386407234, 0.2425322006029049, 0.2789805426144149], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DAO_C.gap.json b/pfam_gap_rates/DAO_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0043a5d070ea037bd8ddbb4c890b877a7af9fb66
--- /dev/null
+++ b/pfam_gap_rates/DAO_C.gap.json
@@ -0,0 +1 @@
+{"family": "DAO_C", "n_seqs": 1479, "length": 143, "gap_rates": [0.5571331981068289, 0.3995943204868154, 0.22785665990534146, 0.20081135902636918, 0.1839080459770115, 0.1744421906693712, 0.16835699797160245, 0.16565246788370522, 0.1643002028397566, 0.1643002028397566, 0.1643002028397566, 0.162947937795808, 0.36443542934415146, 0.22785665990534146, 0.5977011494252874, 0.8025693035835023, 0.9195402298850575, 0.9323867478025692, 0.889790398918188, 0.7674104124408384, 0.5611899932386748, 0.21974306964164977, 0.21703853955375255, 0.21703853955375255, 0.21568627450980393, 0.2325895875591616, 0.20013522650439486, 0.19810682893847195, 0.20148749154834347, 0.18931710615280595, 0.17511832319134552, 0.17173766058147397, 0.1352265043948614, 0.8411088573360379, 0.8715348208248817, 0.8951994590939825, 0.9222447599729547, 0.8816768086544963, 0.8580121703853956, 0.8127112914131169, 0.1162947937795808, 0.8559837728194726, 0.09601081812035159, 0.0878972278566599, 0.08451656524678837, 0.07707910750507099, 0.07031778228532792, 0.06558485463150777, 0.0581473968897904, 0.05611899932386748, 0.05138607167004733, 0.0486815415821501, 0.03380662609871535, 0.027045300878972278, 0.025016903313049357, 0.025016903313049357, 0.025016903313049357, 0.025016903313049357, 0.025016903313049357, 0.025016903313049357, 0.025016903313049357, 0.025016903313049357, 0.025016903313049357, 0.4300202839756592, 0.43204868154158216, 0.043272481406355645, 0.036511156186612576, 0.05273833671399594, 0.08992562542258282, 0.2035158891142664, 0.5138607167004733, 0.506423258958756, 0.8343475321162948, 0.8336713995943205, 0.40297498309668695, 0.20622041920216364, 0.08181203515889114, 0.05138607167004733, 0.03515889114266396, 0.027045300878972278, 0.032454361054766734, 0.056795131845841784, 0.05544286680189317, 0.03515889114266396, 0.022988505747126436, 0.021636240703177823, 0.020960108181203516, 0.016227180527383367, 0.011494252873563218, 0.010818120351588911, 0.00878972278566599, 0.00878972278566599, 0.008113590263691683, 0.0074374577417173765, 0.0033806626098715348, 0.002028397565922921, 0.06558485463150777, 0.002028397565922921, 0.002028397565922921, 0.002028397565922921, 0.002028397565922921, 0.002028397565922921, 0.002028397565922921, 0.002704530087897228, 0.002704530087897228, 0.004056795131845842, 0.005409060175794456, 0.002704530087897228, 0.002704530087897228, 0.0033806626098715348, 0.0033806626098715348, 0.0033806626098715348, 0.004056795131845842, 0.005409060175794456, 0.006085192697768763, 0.02028397565922921, 0.18255578093306288, 0.06626098715348208, 0.07167004732927654, 0.0784313725490196, 0.09398242055442867, 0.10818120351588911, 0.1169709263015551, 0.13252197430696416, 0.14266396213657878, 0.162947937795808, 0.1852603110209601, 0.20486815415821502, 0.21568627450980393, 0.2210953346855984, 0.22650439486139284, 0.2339418526031102, 0.24678837052062205, 0.2542258282623394, 0.26436781609195403, 0.2718052738336714, 0.2799188640973631, 0.290736984448952, 0.29344151453684925, 0.3076402974983097, 0.3597025016903313, 0.444895199459094, 0.7924273157538878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DAP_epimerase.gap.json b/pfam_gap_rates/DAP_epimerase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c6c5498913e929c6390cf2961985702b6948627
--- /dev/null
+++ b/pfam_gap_rates/DAP_epimerase.gap.json
@@ -0,0 +1 @@
+{"family": "DAP_epimerase", "n_seqs": 3479, "length": 142, "gap_rates": [0.5791894222477724, 0.22995113538373096, 0.09542972118424835, 0.047714860592124174, 0.03621730382293763, 0.027594136246047715, 0.021270480022995114, 0.019833285426846797, 0.01925840758838747, 0.01954584650761713, 0.02040816326530612, 0.02012072434607646, 0.01868352974992814, 0.01954584650761713, 0.018396090830698476, 0.018396090830698476, 0.017821212992239148, 0.017821212992239148, 0.022132796780684104, 0.033917792469100316, 0.030755964357574016, 0.02730669732681805, 0.025869502730669732, 0.022995113538373097, 0.8778384593273929, 0.9485484334578902, 0.9295774647887324, 0.7950560505892498, 0.4455303248059787, 0.38832997987927564, 0.030181086519114688, 0.018108651911468814, 0.015234262719172175, 0.012647312446105202, 0.012934751365334866, 0.018108651911468814, 0.01609657947686117, 0.012934751365334866, 0.012072434607645875, 0.012072434607645875, 0.017533774073009486, 0.013509629203794194, 0.00862316757688991, 0.005748778384593274, 0.004024144869215292, 0.0034492670307559644, 0.0031618281115263006, 0.002874389192296637, 0.002874389192296637, 0.002874389192296637, 0.002874389192296637, 0.7844208105777523, 0.9111813739580339, 0.9226789307272205, 0.9387755102040817, 0.9468237999425122, 0.9430870939925265, 0.935901121011785, 0.9166427134233975, 0.8996838171888474, 0.7306697326818051, 0.03276803679218166, 0.027594136246047715, 0.013509629203794194, 0.007185972980741593, 0.005748778384593274, 0.004311583788444955, 0.004024144869215292, 0.0034492670307559644, 0.0034492670307559644, 0.002012072434607646, 0.9212417361310722, 0.002012072434607646, 0.0022995113538373095, 0.0022995113538373095, 0.0022995113538373095, 0.0022995113538373095, 0.0017246335153779822, 0.0022995113538373095, 0.0022995113538373095, 0.005748778384593274, 0.004024144869215292, 0.0031618281115263006, 0.002874389192296637, 0.002874389192296637, 0.002874389192296637, 0.0031618281115263006, 0.5334866340902559, 0.004311583788444955, 0.0034492670307559644, 0.0037367059499856282, 0.004599022707674619, 0.004599022707674619, 0.0054613394653636104, 0.006611095142282265, 0.006611095142282265, 0.006898534061511929, 0.0077608508192009195, 0.009485484334578902, 0.017533774073009486, 0.33227939062949124, 0.3118712273641851, 0.9410750215579189, 0.9238286864041391, 0.22075308996838172, 0.11497556769186548, 0.027594136246047715, 0.02270767461914343, 0.021845357861454442, 0.02242023569991377, 0.02328255245760276, 0.025294624892210404, 0.026731819488358725, 0.029893647599885026, 0.03219315895372234, 0.033055475711411327, 0.04311583788444955, 0.046852543834435184, 0.05058924978442081, 0.0577752227651624, 0.06323656223052601, 0.0735843633227939, 0.07933314170738719, 0.08766887036504743, 0.096579476861167, 0.12561080770336303, 0.21471687266455877, 0.6326530612244898, 0.8010922678930728, 0.8364472549583214, 0.7660247197470538, 0.43029606208680654, 0.17964932451853982, 0.17045127910319058, 0.17476286289163553, 0.17763725208393216, 0.1868352974992814, 0.19919517102615694, 0.22937625754527163, 0.35441218741017533, 0.5995975855130785, 0.9163552745041679], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DASH_Dam1.gap.json b/pfam_gap_rates/DASH_Dam1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13874dc6aa41f44f7bad5cce3e4cf31647a6e0db
--- /dev/null
+++ b/pfam_gap_rates/DASH_Dam1.gap.json
@@ -0,0 +1 @@
+{"family": "DASH_Dam1", "n_seqs": 128, "length": 57, "gap_rates": [0.5, 0.15625, 0.1171875, 0.0859375, 0.0625, 0.046875, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.0234375, 0.015625, 0.015625, 0.015625, 0.0078125, 0.0078125, 0.0078125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9453125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.015625, 0.015625, 0.015625, 0.0234375, 0.03125, 0.0625, 0.1328125, 0.2265625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DBD_Tnp_Mut.gap.json b/pfam_gap_rates/DBD_Tnp_Mut.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41ea10425d6883452eb0b60da4f7739bb96571ac
--- /dev/null
+++ b/pfam_gap_rates/DBD_Tnp_Mut.gap.json
@@ -0,0 +1 @@
+{"family": "DBD_Tnp_Mut", "n_seqs": 499, "length": 70, "gap_rates": [0.8657314629258517, 0.7194388777555111, 0.44488977955911824, 0.23647294589178355, 0.10420841683366733, 0.08617234468937876, 0.07214428857715431, 0.056112224448897796, 0.04609218436873747, 0.04408817635270541, 0.04208416833667335, 0.04208416833667335, 0.03807615230460922, 0.036072144288577156, 0.03006012024048096, 0.028056112224448898, 0.02404809619238477, 0.02404809619238477, 0.022044088176352707, 0.02004008016032064, 0.01603206412825651, 0.014028056112224449, 0.014028056112224449, 0.014028056112224449, 0.01603206412825651, 0.01603206412825651, 0.014028056112224449, 0.014028056112224449, 0.01603206412825651, 0.018036072144288578, 0.014028056112224449, 0.014028056112224449, 0.012024048096192385, 0.014028056112224449, 0.01603206412825651, 0.02004008016032064, 0.022044088176352707, 0.9418837675350702, 0.022044088176352707, 0.02404809619238477, 0.028056112224448898, 0.03206412825651302, 0.03406813627254509, 0.03406813627254509, 0.036072144288577156, 0.05410821643286573, 0.12424849699398798, 0.8817635270541082, 0.8356713426853707, 0.07014028056112225, 0.08216432865731463, 0.07615230460921844, 0.07615230460921844, 0.0781563126252505, 0.08016032064128256, 0.0841683366733467, 0.08617234468937876, 0.08617234468937876, 0.10420841683366733, 0.11022044088176353, 0.12424849699398798, 0.1282565130260521, 0.1342685370741483, 0.15030060120240482, 0.23647294589178355, 0.17234468937875752, 0.18837675350701402, 0.19438877755511022, 0.24849699398797595, 0.3066132264529058], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DBINO.gap.json b/pfam_gap_rates/DBINO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71fe411e102c6dd0a91f3e090392d16520c47665
--- /dev/null
+++ b/pfam_gap_rates/DBINO.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DDA1.gap.json b/pfam_gap_rates/DDA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cfec0c557bbb76523af0a2e42c677b3d601c8d2f
--- /dev/null
+++ b/pfam_gap_rates/DDA1.gap.json
@@ -0,0 +1 @@
+{"family": "DDA1", "n_seqs": 138, "length": 67, "gap_rates": [0.3115942028985507, 0.18115942028985507, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.32608695652173914, 0.3115942028985507, 0.08695652173913043, 0.07971014492753623, 0.07971014492753623, 0.07971014492753623, 0.07971014492753623, 0.07971014492753623, 0.07971014492753623, 0.07971014492753623, 0.572463768115942, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.2246376811594203, 0.5217391304347826, 0.35507246376811596, 0.12318840579710146, 0.09420289855072464, 0.10144927536231885, 0.057971014492753624, 0.036231884057971016, 0.2898550724637681, 0.26811594202898553, 0.043478260869565216, 0.036231884057971016, 0.028985507246376812, 0.043478260869565216, 0.050724637681159424, 0.4420289855072464, 0.8405797101449275, 0.41304347826086957, 0.036231884057971016, 0.028985507246376812, 0.021739130434782608, 0.028985507246376812, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.07246376811594203, 0.07971014492753623, 0.08695652173913043, 0.08695652173913043, 0.09420289855072464, 0.10869565217391304, 0.11594202898550725, 0.16666666666666666, 0.2463768115942029, 0.5144927536231884], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_1_assoc.gap.json b/pfam_gap_rates/DDE_Tnp_1_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0aa14c6bd020422a79d0873f593be76110e3d21d
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_1_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_1_assoc", "n_seqs": 695, "length": 94, "gap_rates": [0.9294964028776979, 0.5654676258992806, 0.37841726618705035, 0.3539568345323741, 0.34388489208633094, 0.32661870503597124, 0.3194244604316547, 0.3107913669064748, 0.3107913669064748, 0.3107913669064748, 0.3107913669064748, 0.3107913669064748, 0.3381294964028777, 0.30935251798561153, 0.3079136690647482, 0.3079136690647482, 0.30503597122302156, 0.30071942446043165, 0.2992805755395683, 0.2935251798561151, 0.2906474820143885, 0.2719424460431655, 0.06330935251798561, 0.06330935251798561, 0.05467625899280575, 0.051798561151079135, 0.04748201438848921, 0.04460431654676259, 0.041726618705035974, 0.04028776978417266, 0.030215827338129497, 0.030215827338129497, 0.030215827338129497, 0.030215827338129497, 0.030215827338129497, 0.030215827338129497, 0.07194244604316546, 0.07194244604316546, 0.07482014388489208, 0.07482014388489208, 0.07338129496402877, 0.07194244604316546, 0.07482014388489208, 0.07625899280575539, 0.07482014388489208, 0.07913669064748201, 0.08201438848920864, 0.08633093525179857, 0.08920863309352518, 0.09064748201438849, 0.09064748201438849, 0.09496402877697842, 0.09496402877697842, 0.09640287769784173, 0.09784172661870504, 0.09928057553956834, 0.9035971223021583, 0.8517985611510791, 0.10503597122302158, 0.14964028776978416, 0.1539568345323741, 0.1410071942446043, 0.14964028776978416, 0.9294964028776979, 0.9424460431654677, 0.9294964028776979, 0.9093525179856116, 0.1223021582733813, 0.1237410071942446, 0.1251798561151079, 0.12661870503597122, 0.12805755395683452, 0.12949640287769784, 0.12949640287769784, 0.13237410071942446, 0.13525179856115108, 0.1366906474820144, 0.1410071942446043, 0.14244604316546763, 0.14388489208633093, 0.14676258992805755, 0.14964028776978416, 0.15251798561151078, 0.18705035971223022, 0.1884892086330935, 0.19280575539568345, 0.1985611510791367, 0.20431654676258992, 0.21007194244604316, 0.22302158273381295, 0.2503597122302158, 0.28633093525179854, 0.497841726618705, 0.5798561151079137], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_IS66_C.gap.json b/pfam_gap_rates/DDE_Tnp_IS66_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..814d7cd4df0f11e7ede2410e77210e533fba3314
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_IS66_C.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_IS66_C", "n_seqs": 738, "length": 45, "gap_rates": [0.0948509485094851, 0.05013550135501355, 0.036585365853658534, 0.03523035230352303, 0.032520325203252036, 0.025745257452574527, 0.023035230352303523, 0.016260162601626018, 0.01084010840108401, 0.01084010840108401, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0013550135501355014, 0.0013550135501355014, 0.0013550135501355014, 0.8292682926829268, 0.9092140921409214, 0.8048780487804879, 0.009485094850948509, 0.47696476964769646, 0.02032520325203252, 0.924119241192412, 0.9444444444444444, 0.8875338753387534, 0.023035230352303523, 0.024390243902439025, 0.025745257452574527, 0.028455284552845527, 0.037940379403794036, 0.03929539295392954, 0.04607046070460705, 0.04742547425474255, 0.051490514905149054, 0.05555555555555555, 0.23306233062330622], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_ISAZ013.gap.json b/pfam_gap_rates/DDE_Tnp_ISAZ013.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae298dd5acc6206e4011b9c2eabd125949a49bc6
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_ISAZ013.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DDOST_48kD.gap.json b/pfam_gap_rates/DDOST_48kD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89ca92cb6d1a99a9944d7462d7baa0da814ad5e5
--- /dev/null
+++ b/pfam_gap_rates/DDOST_48kD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DHC_N2.gap.json b/pfam_gap_rates/DHC_N2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a65fee451db8ff5f00dc2a39cf09399d2f2c8366
--- /dev/null
+++ b/pfam_gap_rates/DHC_N2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DHHA2.gap.json b/pfam_gap_rates/DHHA2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8b4f4fa7d4d2c0e1cd52ead45a76f2d94ab709b
--- /dev/null
+++ b/pfam_gap_rates/DHHA2.gap.json
@@ -0,0 +1 @@
+{"family": "DHHA2", "n_seqs": 1015, "length": 185, "gap_rates": [0.7891625615763547, 0.17635467980295566, 0.10541871921182266, 0.08374384236453201, 0.07093596059113301, 0.06995073891625615, 0.06502463054187192, 0.060098522167487685, 0.052216748768472904, 0.05123152709359606, 0.03940886699507389, 0.02561576354679803, 0.019704433497536946, 0.017733990147783252, 0.017733990147783252, 0.016748768472906402, 0.014778325123152709, 0.014778325123152709, 0.013793103448275862, 0.013793103448275862, 0.0187192118226601, 0.012807881773399015, 0.012807881773399015, 0.012807881773399015, 0.012807881773399015, 0.012807881773399015, 0.013793103448275862, 0.8630541871921182, 0.8955665024630541, 0.9339901477832512, 0.9142857142857143, 0.8729064039408867, 0.8571428571428571, 0.8334975369458129, 0.013793103448275862, 0.02857142857142857, 0.022660098522167486, 0.022660098522167486, 0.0187192118226601, 0.008866995073891626, 0.008866995073891626, 0.007881773399014778, 0.007881773399014778, 0.008866995073891626, 0.009852216748768473, 0.009852216748768473, 0.008866995073891626, 0.008866995073891626, 0.008866995073891626, 0.007881773399014778, 0.11724137931034483, 0.014778325123152709, 0.011822660098522168, 0.01083743842364532, 0.011822660098522168, 0.7556650246305419, 0.07192118226600985, 0.11527093596059114, 0.07093596059113301, 0.04334975369458128, 0.8866995073891626, 0.9280788177339901, 0.8600985221674877, 0.012807881773399015, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.01083743842364532, 0.059113300492610835, 0.020689655172413793, 0.019704433497536946, 0.015763546798029555, 0.008866995073891626, 0.008866995073891626, 0.008866995073891626, 0.008866995073891626, 0.009852216748768473, 0.01083743842364532, 0.01083743842364532, 0.01083743842364532, 0.01083743842364532, 0.7438423645320197, 0.7448275862068966, 0.9113300492610837, 0.9448275862068966, 0.8285714285714286, 0.7320197044334975, 0.7172413793103448, 0.6975369458128079, 0.016748768472906402, 0.014778325123152709, 0.015763546798029555, 0.015763546798029555, 0.38817733990147785, 0.3625615763546798, 0.014778325123152709, 0.016748768472906402, 0.017733990147783252, 0.0187192118226601, 0.020689655172413793, 0.8118226600985222, 0.8364532019704434, 0.9083743842364532, 0.9389162561576355, 0.9497536945812808, 0.9280788177339901, 0.8630541871921182, 0.819704433497537, 0.7950738916256158, 0.042364532019704436, 0.07980295566502463, 0.9428571428571428, 0.9142857142857143, 0.09852216748768473, 0.04630541871921182, 0.2955665024630542, 0.7300492610837438, 0.9458128078817734, 0.8798029556650246, 0.37438423645320196, 0.2482758620689655, 0.03842364532019704, 0.0374384236453202, 0.0374384236453202, 0.06600985221674877, 0.052216748768472904, 0.05714285714285714, 0.059113300492610835, 0.05812807881773399, 0.948768472906404, 0.129064039408867, 0.09753694581280788, 0.3556650246305419, 0.06798029556650247, 0.3438423645320197, 0.04433497536945813, 0.03842364532019704, 0.034482758620689655, 0.0374384236453202, 0.7211822660098522, 0.7300492610837438, 0.7339901477832512, 0.7320197044334975, 0.7330049261083744, 0.8068965517241379, 0.8600985221674877, 0.8896551724137931, 0.9142857142857143, 0.9379310344827586, 0.9458128078817734, 0.9270935960591133, 0.896551724137931, 0.8788177339901477, 0.8285714285714286, 0.7901477832512315, 0.7182266009852217, 0.7073891625615764, 0.7034482758620689, 0.6935960591133005, 0.6916256157635468, 0.6975369458128079, 0.6935960591133005, 0.69064039408867, 0.6886699507389162, 0.6817733990147783, 0.035467980295566505, 0.03645320197044335, 0.03645320197044335, 0.0374384236453202, 0.03645320197044335, 0.0374384236453202, 0.04433497536945813, 0.04433497536945813, 0.04630541871921182, 0.05024630541871921, 0.053201970443349754, 0.05714285714285714, 0.06600985221674877, 0.12315270935960591, 0.29261083743842364, 0.6719211822660098], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DHOR.gap.json b/pfam_gap_rates/DHOR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8976e15583a6e86673a67e8f9a38c4117405ee96
--- /dev/null
+++ b/pfam_gap_rates/DHOR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DHO_dh.gap.json b/pfam_gap_rates/DHO_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a529ed50026fa07f1e1d02cd4ac5a58ac5ac350
--- /dev/null
+++ b/pfam_gap_rates/DHO_dh.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DHR-2.gap.json b/pfam_gap_rates/DHR-2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f02f29d81d562227cc19c2dc9b0f0a5f4f317d2
--- /dev/null
+++ b/pfam_gap_rates/DHR-2.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/DHquinase_II.gap.json b/pfam_gap_rates/DHquinase_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33a2397b975d74d4d6a79f501e22764a77ee0f19
--- /dev/null
+++ b/pfam_gap_rates/DHquinase_II.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DIOX_N.gap.json b/pfam_gap_rates/DIOX_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1d6143fcf27b05534b8d962bf30d570d9303cdc
--- /dev/null
+++ b/pfam_gap_rates/DIOX_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DIRP.gap.json b/pfam_gap_rates/DIRP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5fa44fbfef450dc5ca1b51253935868f3467ab47
--- /dev/null
+++ b/pfam_gap_rates/DIRP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_ligase_aden.gap.json b/pfam_gap_rates/DNA_ligase_aden.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..886e1f585d3313523b82e71a447e1ad42348ce1a
--- /dev/null
+++ b/pfam_gap_rates/DNA_ligase_aden.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_A_exo1.gap.json b/pfam_gap_rates/DNA_pol_A_exo1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8f251227f53ac07c57ac8029923e735a25ee806
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_A_exo1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_B.gap.json b/pfam_gap_rates/DNA_pol_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e356b0a6e3b261c6551567d2f54cdac29d903242
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_B.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_B_2.gap.json b/pfam_gap_rates/DNA_pol_B_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee93d58991706652b7d016939ee5796670693200
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_B_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DOPA_dioxygen.gap.json b/pfam_gap_rates/DOPA_dioxygen.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9d68710a3097803db7c8d9f188fd7834cbc7970
--- /dev/null
+++ b/pfam_gap_rates/DOPA_dioxygen.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1009.gap.json b/pfam_gap_rates/DUF1009.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1697c15b21c79a78614e76151c11f9e2da41535f
--- /dev/null
+++ b/pfam_gap_rates/DUF1009.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1009", "n_seqs": 337, "length": 223, "gap_rates": [0.49851632047477745, 0.21068249258160238, 0.10385756676557864, 0.05934718100890208, 0.04451038575667656, 0.02967359050445104, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.42136498516320475, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.02373887240356083, 0.02373887240356083, 0.9198813056379822, 0.9465875370919882, 0.8694362017804155, 0.09198813056379822, 0.026706231454005934, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.020771513353115726, 0.020771513353115726, 0.02373887240356083, 0.5014836795252225, 0.9436201780415431, 0.6053412462908012, 0.49851632047477745, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.020771513353115726, 0.020771513353115726, 0.020771513353115726, 0.026706231454005934, 0.026706231454005934, 0.026706231454005934, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.02373887240356083, 0.020771513353115726, 0.02373887240356083, 0.020771513353115726, 0.02373887240356083, 0.02373887240356083, 0.020771513353115726, 0.020771513353115726, 0.020771513353115726, 0.017804154302670624, 0.017804154302670624, 0.020771513353115726, 0.01483679525222552, 0.01483679525222552, 0.06528189910979229, 0.020771513353115726, 0.02967359050445104, 0.05341246290801187, 0.032640949554896145, 0.02373887240356083, 0.020771513353115726, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.020771513353115726, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.017804154302670624, 0.44807121661721067, 0.6706231454005934, 0.7270029673590505, 0.7952522255192879, 0.8753709198813057, 0.7626112759643917, 0.7002967359050445, 0.5459940652818991, 0.09198813056379822, 0.01483679525222552, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.011869436201780416, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.01483679525222552, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.020771513353115726, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.017804154302670624, 0.032640949554896145, 0.32047477744807124], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF104.gap.json b/pfam_gap_rates/DUF104.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75583829fd3180600032206fc50ea864b6692118
--- /dev/null
+++ b/pfam_gap_rates/DUF104.gap.json
@@ -0,0 +1 @@
+{"family": "DUF104", "n_seqs": 106, "length": 68, "gap_rates": [0.2830188679245283, 0.25471698113207547, 0.1509433962264151, 0.11320754716981132, 0.04716981132075472, 0.02830188679245283, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.0, 0.0, 0.0, 0.009433962264150943, 0.009433962264150943, 0.0, 0.009433962264150943, 0.0, 0.009433962264150943, 0.0, 0.0, 0.009433962264150943, 0.009433962264150943, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.03773584905660377, 0.7830188679245284, 0.9056603773584906, 0.9245283018867925, 0.8679245283018868, 0.5943396226415094, 0.4056603773584906, 0.39622641509433965, 0.3113207547169811, 0.27358490566037735, 0.3018867924528302, 0.330188679245283, 0.3490566037735849, 0.36792452830188677, 0.37735849056603776, 0.3867924528301887, 0.42452830188679247, 0.42452830188679247, 0.4339622641509434, 0.9056603773584906, 0.9150943396226415, 0.9150943396226415, 0.8679245283018868, 0.5471698113207547, 0.5094339622641509, 0.5188679245283019, 0.5188679245283019, 0.5471698113207547, 0.5754716981132075, 0.5849056603773585, 0.6226415094339622, 0.6320754716981132, 0.7169811320754716, 0.7547169811320755, 0.8584905660377359], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF106.gap.json b/pfam_gap_rates/DUF106.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2ecfa00289d42f6224c96a53b87720ddc23919a
--- /dev/null
+++ b/pfam_gap_rates/DUF106.gap.json
@@ -0,0 +1 @@
+{"family": "DUF106", "n_seqs": 564, "length": 211, "gap_rates": [0.6773049645390071, 0.5, 0.4397163120567376, 0.4166666666666667, 0.4095744680851064, 0.40602836879432624, 0.40602836879432624, 0.40425531914893614, 0.40425531914893614, 0.45567375886524825, 0.44680851063829785, 0.4397163120567376, 0.39184397163120566, 0.3776595744680851, 0.374113475177305, 0.37056737588652483, 0.32978723404255317, 0.18085106382978725, 0.15425531914893617, 0.13652482269503546, 0.12588652482269502, 0.12234042553191489, 0.11879432624113476, 0.11702127659574468, 0.11702127659574468, 0.11524822695035461, 0.11524822695035461, 0.1099290780141844, 0.1099290780141844, 0.1099290780141844, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10460992907801418, 0.10460992907801418, 0.10460992907801418, 0.26773049645390073, 0.3262411347517731, 0.5851063829787234, 0.5195035460992907, 0.2712765957446808, 0.17907801418439717, 0.526595744680851, 0.36524822695035464, 0.11347517730496454, 0.11170212765957446, 0.1099290780141844, 0.10638297872340426, 0.10460992907801418, 0.10815602836879433, 0.10815602836879433, 0.10815602836879433, 0.10283687943262411, 0.10106382978723404, 0.0975177304964539, 0.09929078014184398, 0.0975177304964539, 0.0975177304964539, 0.0975177304964539, 0.09397163120567376, 0.09397163120567376, 0.09219858156028368, 0.08333333333333333, 0.7163120567375887, 0.7570921985815603, 0.7695035460992907, 0.8776595744680851, 0.925531914893617, 0.9397163120567376, 0.9148936170212766, 0.7872340425531915, 0.7659574468085106, 0.75177304964539, 0.7092198581560284, 0.0797872340425532, 0.08687943262411348, 0.08687943262411348, 0.09219858156028368, 0.09219858156028368, 0.08865248226950355, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08156028368794327, 0.08156028368794327, 0.08156028368794327, 0.08156028368794327, 0.0797872340425532, 0.07801418439716312, 0.07624113475177305, 0.0726950354609929, 0.07446808510638298, 0.06914893617021277, 0.07092198581560284, 0.08333333333333333, 0.07092198581560284, 0.06205673758865248, 0.05319148936170213, 0.4592198581560284, 0.4627659574468085, 0.46808510638297873, 0.46808510638297873, 0.4716312056737589, 0.4769503546099291, 0.4787234042553192, 0.48404255319148937, 0.5070921985815603, 0.6205673758865248, 0.7304964539007093, 0.7624113475177305, 0.898936170212766, 0.9361702127659575, 0.9202127659574468, 0.7730496453900709, 0.7429078014184397, 0.6613475177304965, 0.526595744680851, 0.5053191489361702, 0.4787234042553192, 0.4769503546099291, 0.4769503546099291, 0.4698581560283688, 0.46808510638297873, 0.4645390070921986, 0.46099290780141844, 0.45390070921985815, 0.05319148936170213, 0.051418439716312055, 0.051418439716312055, 0.04964539007092199, 0.047872340425531915, 0.047872340425531915, 0.04964539007092199, 0.04964539007092199, 0.047872340425531915, 0.047872340425531915, 0.051418439716312055, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.04964539007092199, 0.05319148936170213, 0.05851063829787234, 0.05673758865248227, 0.0549645390070922, 0.04964539007092199, 0.04964539007092199, 0.047872340425531915, 0.04964539007092199, 0.04964539007092199, 0.051418439716312055, 0.051418439716312055, 0.05319148936170213, 0.0549645390070922, 0.06382978723404255, 0.05319148936170213, 0.0549645390070922, 0.05319148936170213, 0.05319148936170213, 0.05319148936170213, 0.05319148936170213, 0.05319148936170213, 0.0549645390070922, 0.0549645390070922, 0.05319148936170213, 0.05319148936170213, 0.11879432624113476, 0.06028368794326241, 0.06205673758865248, 0.15070921985815602, 0.1453900709219858, 0.14361702127659576, 0.14361702127659576, 0.42907801418439717, 0.425531914893617, 0.07092198581560284, 0.06560283687943262, 0.06560283687943262, 0.06382978723404255, 0.06205673758865248, 0.06028368794326241, 0.06205673758865248, 0.06205673758865248, 0.05673758865248227, 0.05673758865248227, 0.05673758865248227, 0.05673758865248227, 0.0549645390070922, 0.05851063829787234, 0.05851063829787234, 0.05851063829787234, 0.05851063829787234, 0.06028368794326241, 0.06028368794326241, 0.06028368794326241, 0.06028368794326241, 0.06205673758865248, 0.06560283687943262, 0.07092198581560284, 0.07446808510638298, 0.08333333333333333, 0.08865248226950355, 0.09397163120567376, 0.11879432624113476, 0.1347517730496454, 0.1595744680851064, 0.24468085106382978, 0.6312056737588653], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF108.gap.json b/pfam_gap_rates/DUF108.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3c277f8265f2367093f6129bbc6e5658661343d
--- /dev/null
+++ b/pfam_gap_rates/DUF108.gap.json
@@ -0,0 +1 @@
+{"family": "DUF108", "n_seqs": 228, "length": 92, "gap_rates": [0.41228070175438597, 0.2149122807017544, 0.09210526315789473, 0.03508771929824561, 0.03070175438596491, 0.02631578947368421, 0.017543859649122806, 0.017543859649122806, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.013157894736842105, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.8201754385964912, 0.8201754385964912, 0.14035087719298245, 0.10087719298245613, 0.008771929824561403, 0.008771929824561403, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.008771929824561403, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0, 0.0043859649122807015, 0.8464912280701754, 0.0043859649122807015, 0.0043859649122807015, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.09210526315789473, 0.07894736842105263, 0.07894736842105263, 0.08333333333333333, 0.07894736842105263, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.04824561403508772, 0.08333333333333333, 0.10964912280701754, 0.17982456140350878, 0.15350877192982457, 0.14473684210526316, 0.13596491228070176, 0.8157894736842105, 0.11842105263157894, 0.09210526315789473, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.10964912280701754, 0.15350877192982457, 0.543859649122807], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF11.gap.json b/pfam_gap_rates/DUF11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6118fa84343df617b5e714bed6f07f0bac284459
--- /dev/null
+++ b/pfam_gap_rates/DUF11.gap.json
@@ -0,0 +1 @@
+{"family": "DUF11", "n_seqs": 2575, "length": 133, "gap_rates": [0.5899029126213592, 0.4609708737864078, 0.36854368932038833, 0.3363106796116505, 0.32038834951456313, 0.24854368932038834, 0.20116504854368933, 0.14097087378640777, 0.9196116504854369, 0.9297087378640777, 0.8850485436893204, 0.07728155339805826, 0.04349514563106796, 0.033398058252427185, 0.02640776699029126, 0.022524271844660194, 0.015533980582524271, 0.006213592233009709, 0.0031067961165048546, 0.0027184466019417475, 0.001941747572815534, 0.0015533980582524273, 0.0015533980582524273, 0.0011650485436893205, 0.0007766990291262136, 0.0007766990291262136, 0.0015533980582524273, 0.0015533980582524273, 0.0011650485436893205, 0.0007766990291262136, 0.0003883495145631068, 0.0003883495145631068, 0.0, 0.930873786407767, 0.09553398058252427, 0.0003883495145631068, 0.0003883495145631068, 0.0007766990291262136, 0.0011650485436893205, 0.0011650485436893205, 0.0007766990291262136, 0.006990291262135922, 0.005436893203883495, 0.901747572815534, 0.9064077669902912, 0.912621359223301, 0.9192233009708738, 0.9246601941747573, 0.9347572815533981, 0.9475728155339805, 0.9297087378640777, 0.9207766990291262, 0.9161165048543689, 0.9102912621359224, 0.9056310679611651, 0.8982524271844661, 0.009708737864077669, 0.9440776699029126, 0.019029126213592235, 0.019029126213592235, 0.02058252427184466, 0.019417475728155338, 0.03262135922330097, 0.028737864077669904, 0.029902912621359225, 0.027184466019417475, 0.027572815533980582, 0.03378640776699029, 0.03223300970873787, 0.45398058252427187, 0.566990291262136, 0.7180582524271845, 0.7794174757281553, 0.8287378640776699, 0.8831067961165049, 0.9157281553398058, 0.9355339805825242, 0.9440776699029126, 0.9258252427184466, 0.8966990291262136, 0.8489320388349515, 0.8034951456310679, 0.7471844660194175, 0.6112621359223301, 0.5328155339805826, 0.41320388349514564, 0.19650485436893203, 0.22446601941747574, 0.20233009708737865, 0.18174757281553397, 0.1833009708737864, 0.16854368932038835, 0.16233009708737864, 0.16970873786407767, 0.17398058252427184, 0.11650485436893204, 0.46368932038834954, 0.7902912621359224, 0.9238834951456311, 0.8617475728155339, 0.6485436893203883, 0.3755339805825243, 0.09009708737864078, 0.07456310679611651, 0.07067961165048543, 0.07262135922330097, 0.07339805825242718, 0.07572815533980583, 0.07766990291262135, 0.08699029126213592, 0.08970873786407767, 0.0912621359223301, 0.09320388349514563, 0.09475728155339806, 0.09747572815533981, 0.1029126213592233, 0.10834951456310679, 0.11611650485436893, 0.13281553398058252, 0.1666019417475728, 0.2054368932038835, 0.24699029126213592, 0.2807766990291262, 0.3219417475728155, 0.46873786407766993, 0.5285436893203883, 0.6423300970873786, 0.8330097087378641, 0.5324271844660194, 0.5448543689320389, 0.5611650485436893, 0.6811650485436893, 0.821747572815534], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1128.gap.json b/pfam_gap_rates/DUF1128.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a45b673dd8f94959d378dd5833c6c8d429d0a1b
--- /dev/null
+++ b/pfam_gap_rates/DUF1128.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1128", "n_seqs": 103, "length": 71, "gap_rates": [0.1650485436893204, 0.1262135922330097, 0.08737864077669903, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.038834951456310676, 0.02912621359223301, 0.009708737864077669, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.04854368932038835, 0.27184466019417475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1136.gap.json b/pfam_gap_rates/DUF1136.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb84f3ce37288f844bdf79ede84d4d91d79639f3
--- /dev/null
+++ b/pfam_gap_rates/DUF1136.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1136", "n_seqs": 326, "length": 31, "gap_rates": [0.16257668711656442, 0.0705521472392638, 0.04294478527607362, 0.024539877300613498, 0.009202453987730062, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.8834355828220859, 0.941717791411043, 0.8834355828220859, 0.8803680981595092, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003067484662576687, 0.006134969325153374, 0.006134969325153374, 0.024539877300613498, 0.049079754601226995, 0.20245398773006135, 0.13803680981595093, 0.1901840490797546, 0.22392638036809817, 0.2668711656441718, 0.4110429447852761, 0.5950920245398773], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1178.gap.json b/pfam_gap_rates/DUF1178.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcb5d42ac048eb6db66d361b2faff5280abb46d7
--- /dev/null
+++ b/pfam_gap_rates/DUF1178.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1178", "n_seqs": 285, "length": 169, "gap_rates": [0.09473684210526316, 0.06666666666666667, 0.056140350877192984, 0.05263157894736842, 0.05263157894736842, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.9438596491228071, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.05263157894736842, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.04912280701754386, 0.05263157894736842, 0.04912280701754386, 0.0456140350877193, 0.0456140350877193, 0.0456140350877193, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.031578947368421054, 0.03508771929824561, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.04912280701754386, 0.0456140350877193, 0.056140350877192984, 0.05964912280701754, 0.06666666666666667, 0.07368421052631578, 0.0912280701754386, 0.20350877192982456, 0.28771929824561404, 0.35789473684210527, 0.41754385964912283, 0.5298245614035088, 0.5754385964912281, 0.5859649122807018, 0.6070175438596491, 0.6175438596491228, 0.6385964912280702, 0.656140350877193, 0.631578947368421, 0.7614035087719299, 0.8105263157894737, 0.8385964912280702, 0.8666666666666667, 0.8807017543859649, 0.9052631578947369, 0.9228070175438596, 0.9263157894736842, 0.9298245614035088, 0.9333333333333333, 0.9298245614035088, 0.9228070175438596, 0.9122807017543859, 0.887719298245614, 0.8771929824561403, 0.8456140350877193, 0.8210526315789474, 0.7894736842105263, 0.7508771929824561, 0.47719298245614034, 0.3719298245614035, 0.2736842105263158, 0.19298245614035087, 0.13333333333333333, 0.09473684210526316, 0.06666666666666667, 0.05964912280701754, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.056140350877192984, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.05964912280701754, 0.08421052631578947, 0.1649122807017544, 0.4421052631578947], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF123.gap.json b/pfam_gap_rates/DUF123.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d2516110870f90a3c42be4fccb7ea234aead2bc
--- /dev/null
+++ b/pfam_gap_rates/DUF123.gap.json
@@ -0,0 +1 @@
+{"family": "DUF123", "n_seqs": 165, "length": 106, "gap_rates": [0.8, 0.3212121212121212, 0.06060606060606061, 0.03636363636363636, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.01818181818181818, 0.01818181818181818, 0.5393939393939394, 0.5212121212121212, 0.012121212121212121, 0.024242424242424242, 0.17575757575757575, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.11515151515151516, 0.13333333333333333, 0.10303030303030303, 0.12727272727272726, 0.32727272727272727, 0.6727272727272727, 0.7515151515151515, 0.6787878787878788, 0.3333333333333333, 0.01818181818181818, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.21818181818181817, 0.23636363636363636, 0.06060606060606061, 0.10303030303030303, 0.06060606060606061, 0.06060606060606061, 0.048484848484848485, 0.04242424242424243, 0.04242424242424243, 0.030303030303030304, 0.024242424242424242, 0.048484848484848485, 0.6484848484848484, 0.2787878787878788, 0.9090909090909091, 0.12727272727272726, 0.04242424242424243, 0.01818181818181818, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.3515151515151515, 0.1696969696969697, 0.7393939393939394, 0.8787878787878788, 0.5636363636363636, 0.06666666666666667, 0.1696969696969697, 0.03636363636363636, 0.7878787878787878, 0.9393939393939394, 0.5818181818181818, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.9212121212121213, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.9030303030303031, 0.7818181818181819, 0.024242424242424242, 0.03636363636363636, 0.04242424242424243, 0.04242424242424243, 0.05454545454545454, 0.07878787878787878, 0.593939393939394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1237.gap.json b/pfam_gap_rates/DUF1237.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4b71fcfe542c19208720d3a847f213f2d8e4f56d
--- /dev/null
+++ b/pfam_gap_rates/DUF1237.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1237", "n_seqs": 468, "length": 456, "gap_rates": [0.42094017094017094, 0.25, 0.19017094017094016, 0.1581196581196581, 0.14957264957264957, 0.14957264957264957, 0.1452991452991453, 0.14102564102564102, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.13675213675213677, 0.1388888888888889, 0.1346153846153846, 0.13247863247863248, 0.13247863247863248, 0.13247863247863248, 0.13247863247863248, 0.13247863247863248, 0.13247863247863248, 0.13247863247863248, 0.13247863247863248, 0.1282051282051282, 0.1282051282051282, 0.13034188034188035, 0.12606837606837606, 0.452991452991453, 0.6452991452991453, 0.6837606837606838, 0.7948717948717948, 0.8076923076923077, 0.8226495726495726, 0.8247863247863247, 0.844017094017094, 0.8611111111111112, 0.8888888888888888, 0.9294871794871795, 0.9465811965811965, 0.9081196581196581, 0.8696581196581197, 0.8547008547008547, 0.8269230769230769, 0.8226495726495726, 0.8183760683760684, 0.8055555555555556, 0.7841880341880342, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1279.gap.json b/pfam_gap_rates/DUF1279.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1dc20bda68879fcd173baae112a77f73ff0c5ebf
--- /dev/null
+++ b/pfam_gap_rates/DUF1279.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1279", "n_seqs": 423, "length": 139, "gap_rates": [0.6973995271867612, 0.14184397163120568, 0.10401891252955082, 0.09929078014184398, 0.08747044917257683, 0.06619385342789598, 0.05200945626477541, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04964539007092199, 0.04728132387706856, 0.04728132387706856, 0.04728132387706856, 0.04728132387706856, 0.04728132387706856, 0.04728132387706856, 0.04964539007092199, 0.04728132387706856, 0.04491725768321513, 0.04491725768321513, 0.04491725768321513, 0.0425531914893617, 0.04491725768321513, 0.0425531914893617, 0.04491725768321513, 0.04018912529550828, 0.9479905437352246, 0.6217494089834515, 0.02127659574468085, 0.018912529550827423, 0.026004728132387706, 0.6690307328605201, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.018912529550827423, 0.5626477541371159, 0.5177304964539007, 0.48699763593380613, 0.5910165484633569, 0.5933806146572104, 0.6028368794326241, 0.6122931442080378, 0.6335697399527187, 0.6430260047281324, 0.6595744680851063, 0.6784869976359338, 0.7186761229314421, 0.7399527186761229, 0.75177304964539, 0.7754137115839244, 0.7848699763593381, 0.8014184397163121, 0.8132387706855791, 0.8368794326241135, 0.851063829787234, 0.8581560283687943, 0.8794326241134752, 0.900709219858156, 0.9148936170212766, 0.9054373522458629, 0.8888888888888888, 0.8699763593380615, 0.8557919621749409, 0.8416075650118203, 0.8274231678486997, 0.8085106382978723, 0.7943262411347518, 0.7825059101654847, 0.7706855791962175, 0.7446808510638298, 0.7375886524822695, 0.6879432624113475, 0.6666666666666666, 0.6453900709219859, 0.6359338061465721, 0.6146572104018913, 0.6099290780141844, 0.6004728132387707, 0.5933806146572104, 0.5886524822695035, 0.49645390070921985, 0.06619385342789598, 0.0591016548463357, 0.07092198581560284, 0.0591016548463357, 0.06382978723404255, 0.08274231678486997, 0.21513002364066194, 0.16784869976359337, 0.15130023640661938, 0.13238770685579196, 0.933806146572104, 0.02364066193853428, 0.018912529550827423, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.018912529550827423, 0.018912529550827423, 0.018912529550827423, 0.018912529550827423, 0.018912529550827423, 0.018912529550827423, 0.018912529550827423, 0.018912529550827423, 0.018912529550827423, 0.02127659574468085, 0.8888888888888888, 0.02364066193853428, 0.02364066193853428, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.03309692671394799, 0.04018912529550828, 0.08983451536643026, 0.5933806146572104], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1282.gap.json b/pfam_gap_rates/DUF1282.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e401cd82caf22fc6d23f15641216e2cbc7a939a5
--- /dev/null
+++ b/pfam_gap_rates/DUF1282.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1284.gap.json b/pfam_gap_rates/DUF1284.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6327e42eb37ddb313efed7eb2de4bd0d3848612f
--- /dev/null
+++ b/pfam_gap_rates/DUF1284.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1284", "n_seqs": 146, "length": 117, "gap_rates": [0.0821917808219178, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.0547945205479452, 0.0547945205479452, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.0273972602739726, 0.02054794520547945, 0.0547945205479452, 0.04794520547945205, 0.04794520547945205, 0.02054794520547945, 0.0136986301369863, 0.9178082191780822, 0.8493150684931506, 0.04794520547945205, 0.0273972602739726, 0.0547945205479452, 0.4246575342465753, 0.3493150684931507, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7945205479452054, 0.03424657534246575, 0.863013698630137, 0.273972602739726, 0.00684931506849315, 0.0, 0.0, 0.0, 0.7602739726027398, 0.8013698630136986, 0.7602739726027398, 0.7328767123287672, 0.2808219178082192, 0.0136986301369863, 0.00684931506849315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8493150684931506, 0.8698630136986302, 0.8835616438356164, 0.8835616438356164, 0.8561643835616438, 0.8424657534246576, 0.0, 0.0, 0.00684931506849315, 0.0547945205479452, 0.04794520547945205, 0.03424657534246575, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.0273972602739726, 0.0684931506849315, 0.04794520547945205, 0.18493150684931506, 0.1232876712328767, 0.0410958904109589, 0.0273972602739726, 0.3972602739726027, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.03424657534246575, 0.0958904109589041, 0.1506849315068493], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1290.gap.json b/pfam_gap_rates/DUF1290.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..110da3fa226fe5061d03c35867ade36745b5dc72
--- /dev/null
+++ b/pfam_gap_rates/DUF1290.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1290", "n_seqs": 291, "length": 88, "gap_rates": [0.12027491408934708, 0.044673539518900345, 0.01718213058419244, 0.010309278350515464, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.0, 0.0, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.006872852233676976, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.6254295532646048, 0.6219931271477663, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.06529209621993128], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1294.gap.json b/pfam_gap_rates/DUF1294.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fd6eac2e23e892f44a56f56a539614254b35b59
--- /dev/null
+++ b/pfam_gap_rates/DUF1294.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1294", "n_seqs": 579, "length": 55, "gap_rates": [0.08981001727115717, 0.05181347150259067, 0.031088082901554404, 0.022452504317789293, 0.022452504317789293, 0.022452504317789293, 0.018998272884283247, 0.008635578583765112, 0.0069084628670120895, 0.0069084628670120895, 0.0069084628670120895, 0.0069084628670120895, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0069084628670120895, 0.0051813471502590676, 0.0051813471502590676, 0.0069084628670120895, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0034542314335060447, 0.0034542314335060447, 0.0034542314335060447, 0.0017271157167530224, 0.0017271157167530224, 0.0017271157167530224, 0.0017271157167530224, 0.0, 0.0, 0.0, 0.0, 0.03454231433506045, 0.0017271157167530224, 0.0017271157167530224, 0.0017271157167530224, 0.0017271157167530224, 0.0017271157167530224, 0.0017271157167530224, 0.0017271157167530224, 0.0034542314335060447, 0.0051813471502590676, 0.0069084628670120895, 0.0069084628670120895, 0.0069084628670120895, 0.0069084628670120895, 0.0069084628670120895, 0.0069084628670120895, 0.0069084628670120895, 0.0069084628670120895, 0.008635578583765112, 0.013816925734024179, 0.02072538860103627, 0.031088082901554404], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1348.gap.json b/pfam_gap_rates/DUF1348.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f179dca01bca914907bd8fb23d233e2e567a393
--- /dev/null
+++ b/pfam_gap_rates/DUF1348.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1348", "n_seqs": 366, "length": 133, "gap_rates": [0.060109289617486336, 0.060109289617486336, 0.0546448087431694, 0.0546448087431694, 0.0546448087431694, 0.05191256830601093, 0.05191256830601093, 0.05191256830601093, 0.04918032786885246, 0.04644808743169399, 0.04644808743169399, 0.04644808743169399, 0.04371584699453552, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03551912568306011, 0.03551912568306011, 0.03825136612021858, 0.040983606557377046, 0.040983606557377046, 0.04371584699453552, 0.040983606557377046, 0.03825136612021858, 0.040983606557377046, 0.040983606557377046, 0.03551912568306011, 0.03551912568306011, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03551912568306011, 0.03551912568306011, 0.03551912568306011, 0.03551912568306011, 0.03551912568306011, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03551912568306011, 0.03551912568306011, 0.03825136612021858, 0.03551912568306011, 0.03551912568306011, 0.03551912568306011, 0.03278688524590164, 0.030054644808743168, 0.030054644808743168, 0.0273224043715847, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02459016393442623, 0.02459016393442623, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02185792349726776, 0.02459016393442623, 0.9262295081967213, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.9426229508196722, 0.9371584699453552, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.030054644808743168, 0.030054644808743168, 0.030054644808743168, 0.030054644808743168, 0.030054644808743168, 0.030054644808743168, 0.030054644808743168, 0.030054644808743168, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03551912568306011, 0.04644808743169399, 0.0546448087431694, 0.0546448087431694, 0.060109289617486336, 0.06284153005464481, 0.06830601092896176, 0.10655737704918032, 0.4453551912568306], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1415.gap.json b/pfam_gap_rates/DUF1415.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef688f8f6b9352779ad8b8a04ec633b77d937ddb
--- /dev/null
+++ b/pfam_gap_rates/DUF1415.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1415", "n_seqs": 218, "length": 180, "gap_rates": [0.944954128440367, 0.42201834862385323, 0.22935779816513763, 0.13761467889908258, 0.11467889908256881, 0.10091743119266056, 0.0963302752293578, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.0779816513761468, 0.0779816513761468, 0.06880733944954129, 0.06422018348623854, 0.06422018348623854, 0.05504587155963303, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05504587155963303, 0.05504587155963303, 0.05963302752293578, 0.944954128440367, 0.944954128440367, 0.944954128440367, 0.9403669724770642, 0.06880733944954129, 0.06422018348623854, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05045871559633028, 0.05963302752293578, 0.05504587155963303, 0.05045871559633028, 0.06422018348623854, 0.05504587155963303, 0.05045871559633028, 0.05045871559633028, 0.06422018348623854, 0.06422018348623854, 0.05963302752293578, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05963302752293578, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.06422018348623854, 0.06422018348623854, 0.05963302752293578, 0.05504587155963303, 0.05504587155963303, 0.05045871559633028, 0.05504587155963303, 0.3256880733944954, 0.3211009174311927, 0.05504587155963303, 0.05504587155963303, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.05045871559633028, 0.8899082568807339, 0.05504587155963303, 0.05045871559633028, 0.045871559633027525, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.045871559633027525, 0.045871559633027525, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.05045871559633028, 0.05045871559633028, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05045871559633028, 0.05045871559633028, 0.05504587155963303, 0.05963302752293578, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.05504587155963303, 0.07339449541284404, 0.944954128440367, 0.07339449541284404, 0.07339449541284404, 0.06880733944954129, 0.06880733944954129, 0.9357798165137615, 0.944954128440367, 0.9174311926605505, 0.0963302752293578, 0.08256880733944955, 0.06880733944954129, 0.06422018348623854, 0.06880733944954129, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.0779816513761468, 0.08256880733944955, 0.0871559633027523, 0.0871559633027523, 0.0963302752293578, 0.09174311926605505, 0.0963302752293578, 0.0963302752293578, 0.10091743119266056, 0.10091743119266056, 0.10550458715596331, 0.9311926605504587, 0.11009174311926606, 0.11009174311926606, 0.1651376146788991, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.11926605504587157, 0.12385321100917432, 0.12844036697247707, 0.13302752293577982, 0.13761467889908258, 0.16055045871559634, 0.18807339449541285, 0.23853211009174313, 0.46788990825688076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1453.gap.json b/pfam_gap_rates/DUF1453.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c0579ac2ca56d09e0c381b439afa3cd127c2a25
--- /dev/null
+++ b/pfam_gap_rates/DUF1453.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1453", "n_seqs": 147, "length": 153, "gap_rates": [0.5374149659863946, 0.3129251700680272, 0.22448979591836735, 0.17006802721088435, 0.1360544217687075, 0.09523809523809523, 0.08163265306122448, 0.07482993197278912, 0.04081632653061224, 0.034013605442176874, 0.034013605442176874, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.027210884353741496, 0.027210884353741496, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.8707482993197279, 0.7891156462585034, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.02040816326530612, 0.006802721088435374, 0.9455782312925171, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.891156462585034, 0.013605442176870748, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.0, 0.0, 0.0, 0.0, 0.006802721088435374, 0.9251700680272109, 0.9455782312925171, 0.891156462585034, 0.006802721088435374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006802721088435374, 0.02040816326530612, 0.8095238095238095, 0.02040816326530612, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.7959183673469388, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.013605442176870748, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.02040816326530612, 0.027210884353741496, 0.034013605442176874, 0.027210884353741496, 0.061224489795918366, 0.06802721088435375, 0.05442176870748299, 0.06802721088435375, 0.19727891156462585, 0.09523809523809523, 0.08843537414965986, 0.08843537414965986, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.10884353741496598, 0.10204081632653061, 0.10884353741496598, 0.10204081632653061, 0.10204081632653061, 0.10884353741496598, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.14285714285714285, 0.14965986394557823, 0.14965986394557823, 0.1564625850340136, 0.1564625850340136, 0.16326530612244897, 0.17687074829931973, 0.17687074829931973, 0.17687074829931973, 0.17687074829931973, 0.1836734693877551, 0.23129251700680273, 0.41496598639455784], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1467.gap.json b/pfam_gap_rates/DUF1467.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..567be79360dd58dd148f9dbbc9335d3d53b5b6fb
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+++ b/pfam_gap_rates/DUF1467.gap.json
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diff --git a/pfam_gap_rates/DUF1479.gap.json b/pfam_gap_rates/DUF1479.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8121e733436da2967b24cc47daa3cbbcbdb343ee
--- /dev/null
+++ b/pfam_gap_rates/DUF1479.gap.json
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diff --git a/pfam_gap_rates/DUF1566.gap.json b/pfam_gap_rates/DUF1566.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a1aa86939aeb2c826004621a820e7ae7cc84b1d
--- /dev/null
+++ b/pfam_gap_rates/DUF1566.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF1631.gap.json b/pfam_gap_rates/DUF1631.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e544b95a5fb6d62ea754cd13aa53df9dfd025c6f
--- /dev/null
+++ b/pfam_gap_rates/DUF1631.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1648.gap.json b/pfam_gap_rates/DUF1648.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9bb575f6ca87284d925d6904ca8598027d5f9d45
--- /dev/null
+++ b/pfam_gap_rates/DUF1648.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1648", "n_seqs": 555, "length": 50, "gap_rates": [0.6054054054054054, 0.23963963963963963, 0.12432432432432433, 0.06126126126126126, 0.036036036036036036, 0.032432432432432434, 0.025225225225225224, 0.01981981981981982, 0.01981981981981982, 0.016216216216216217, 0.016216216216216217, 0.014414414414414415, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.012612612612612612, 0.010810810810810811, 0.009009009009009009, 0.007207207207207207, 0.0036036036036036037, 0.0036036036036036037, 0.0036036036036036037, 0.0018018018018018018, 0.0, 0.0, 0.005405405405405406, 0.021621621621621623, 0.005405405405405406, 0.0036036036036036037, 0.018018018018018018, 0.0018018018018018018, 0.0, 0.0036036036036036037, 0.0, 0.0, 0.0036036036036036037, 0.0036036036036036037, 0.8972972972972973, 0.42702702702702705, 0.018018018018018018, 0.023423423423423424, 0.025225225225225224, 0.03423423423423423, 0.05405405405405406, 0.08288288288288288, 0.12612612612612611, 0.15315315315315314, 0.21621621621621623, 0.3945945945945946, 0.8036036036036036], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF169.gap.json b/pfam_gap_rates/DUF169.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ea640f4e03499ec18ca361948bda67bc0d8fcd4
--- /dev/null
+++ b/pfam_gap_rates/DUF169.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1700.gap.json b/pfam_gap_rates/DUF1700.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..97bfdc28074681c9ce77c14b9f8984b9f25469bc
--- /dev/null
+++ b/pfam_gap_rates/DUF1700.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1700", "n_seqs": 434, "length": 225, "gap_rates": [0.23732718894009217, 0.2073732718894009, 0.16359447004608296, 0.06451612903225806, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03456221198156682, 0.03456221198156682, 0.03456221198156682, 0.03456221198156682, 0.03686635944700461, 0.8824884792626728, 0.059907834101382486, 0.03917050691244239, 0.03456221198156682, 0.03456221198156682, 0.03456221198156682, 0.03686635944700461, 0.03225806451612903, 0.03225806451612903, 0.03456221198156682, 0.03225806451612903, 0.029953917050691243, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.029953917050691243, 0.029953917050691243, 0.027649769585253458, 0.03456221198156682, 0.055299539170506916, 0.09216589861751152, 0.14055299539170507, 0.1497695852534562, 0.14055299539170507, 0.15668202764976957, 0.12903225806451613, 0.06451612903225806, 0.05069124423963134, 0.03686635944700461, 0.029953917050691243, 0.027649769585253458, 0.029953917050691243, 0.02534562211981567, 0.02534562211981567, 0.02534562211981567, 0.03225806451612903, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02534562211981567, 0.029953917050691243, 0.029953917050691243, 0.029953917050691243, 0.03225806451612903, 0.03686635944700461, 0.03917050691244239, 0.04608294930875576, 0.08294930875576037, 0.12211981566820276, 0.15207373271889402, 0.15898617511520738, 0.1543778801843318, 0.16589861751152074, 0.1728110599078341, 0.652073732718894, 0.6797235023041475, 0.7073732718894009, 0.7396313364055299, 0.7695852534562212, 0.804147465437788, 0.836405529953917, 0.8663594470046083, 0.8778801843317973, 0.8917050691244239, 0.9032258064516129, 0.9124423963133641, 0.9308755760368663, 0.9423963133640553, 0.9354838709677419, 0.9193548387096774, 0.9078341013824884, 0.8986175115207373, 0.8870967741935484, 0.8755760368663594, 0.8502304147465438, 0.8271889400921659, 0.7903225806451613, 0.7534562211981567, 0.7211981566820277, 0.6912442396313364, 0.663594470046083, 0.6474654377880185, 0.20276497695852536, 0.23963133640552994, 0.2511520737327189, 0.2488479262672811, 0.2488479262672811, 0.24193548387096775, 0.2465437788018433, 0.26036866359447003, 0.26497695852534564, 0.2511520737327189, 0.26497695852534564, 0.2672811059907834, 0.27880184331797236, 0.2834101382488479, 0.2764976958525346, 0.2834101382488479, 0.27880184331797236, 0.28110599078341014, 0.271889400921659, 0.2672811059907834, 0.27419354838709675, 0.271889400921659, 0.27419354838709675, 0.2672811059907834, 0.2764976958525346, 0.2695852534562212, 0.2764976958525346, 0.27880184331797236, 0.2764976958525346, 0.2880184331797235, 0.2857142857142857, 0.2857142857142857, 0.2880184331797235, 0.2926267281105991, 0.2926267281105991, 0.29723502304147464, 0.29493087557603687, 0.9493087557603687, 0.29493087557603687, 0.2926267281105991, 0.2903225806451613, 0.2926267281105991, 0.2903225806451613, 0.2880184331797235, 0.2926267281105991, 0.29493087557603687, 0.2995391705069124, 0.3064516129032258, 0.30414746543778803, 0.9147465437788018, 0.9377880184331797, 0.9470046082949308, 0.9193548387096774, 0.8894009216589862, 0.315668202764977, 0.31797235023041476, 0.32027649769585254, 0.3248847926267281, 0.3225806451612903, 0.31797235023041476, 0.3317972350230415, 0.33410138248847926, 0.3387096774193548, 0.347926267281106, 0.35714285714285715, 0.35714285714285715, 0.3778801843317972, 0.3870967741935484, 0.391705069124424, 0.38940092165898615, 0.3986175115207373, 0.41013824884792627, 0.41244239631336405, 0.41705069124423966, 0.45852534562211983, 0.4792626728110599, 0.7511520737327189, 0.7995391705069125, 0.8847926267281107, 0.9262672811059908, 0.9447004608294931, 0.9009216589861752, 0.8179723502304147, 0.7695852534562212, 0.7004608294930875, 0.4377880184331797, 0.42857142857142855, 0.423963133640553, 0.41705069124423966, 0.41705069124423966, 0.41935483870967744, 0.4216589861751152, 0.42626728110599077, 0.42626728110599077, 0.4216589861751152, 0.423963133640553, 0.4216589861751152, 0.43548387096774194, 0.43548387096774194, 0.45161290322580644, 0.45161290322580644, 0.45622119815668205, 0.47235023041474655, 0.4861751152073733, 0.4976958525345622, 0.4930875576036866, 0.5092165898617511, 0.5230414746543779, 0.532258064516129, 0.5368663594470046, 0.5668202764976958, 0.5875576036866359, 0.5944700460829493, 0.6036866359447005, 0.6244239631336406, 0.6359447004608295, 0.6405529953917051, 0.652073732718894, 0.6728110599078341, 0.7004608294930875, 0.7350230414746544, 0.7788018433179723, 0.815668202764977, 0.8387096774193549, 0.8456221198156681, 0.8732718894009217, 0.8963133640552995], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1707.gap.json b/pfam_gap_rates/DUF1707.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13e9d0c532d18ed08479c1820233cb2edb5570fb
--- /dev/null
+++ b/pfam_gap_rates/DUF1707.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1707", "n_seqs": 468, "length": 53, "gap_rates": [0.28205128205128205, 0.13675213675213677, 0.07051282051282051, 0.049145299145299144, 0.0405982905982906, 0.02564102564102564, 0.023504273504273504, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.010683760683760684, 0.008547008547008548, 0.004273504273504274, 0.004273504273504274, 0.002136752136752137, 0.002136752136752137, 0.002136752136752137, 0.002136752136752137, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002136752136752137, 0.002136752136752137, 0.002136752136752137, 0.002136752136752137, 0.002136752136752137, 0.002136752136752137, 0.002136752136752137, 0.002136752136752137, 0.002136752136752137, 0.008547008547008548, 0.008547008547008548, 0.014957264957264958, 0.02564102564102564, 0.202991452991453], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1713.gap.json b/pfam_gap_rates/DUF1713.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c00e31c5577d2d25394f30a84eb6bc4988eccfe
--- /dev/null
+++ b/pfam_gap_rates/DUF1713.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1713", "n_seqs": 313, "length": 33, "gap_rates": [0.19169329073482427, 0.06389776357827476, 0.025559105431309903, 0.019169329073482427, 0.009584664536741214, 0.009584664536741214, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003194888178913738, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.01597444089456869, 0.019169329073482427, 0.019169329073482427, 0.051118210862619806, 0.11182108626198083, 0.134185303514377, 0.14376996805111822, 0.16932907348242812, 0.4057507987220447, 0.4504792332268371, 0.670926517571885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1754.gap.json b/pfam_gap_rates/DUF1754.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b7b9e0c5185aee756245e6e838a3f6345244ece
--- /dev/null
+++ b/pfam_gap_rates/DUF1754.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1754", "n_seqs": 264, "length": 118, "gap_rates": [0.4015151515151515, 0.20833333333333334, 0.18181818181818182, 0.14772727272727273, 0.14015151515151514, 0.06439393939393939, 0.056818181818181816, 0.05303030303030303, 0.05303030303030303, 0.05303030303030303, 0.05303030303030303, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.36742424242424243, 0.5795454545454546, 0.22348484848484848, 0.4696969696969697, 0.4090909090909091, 0.9204545454545454, 0.6477272727272727, 0.3333333333333333, 0.24621212121212122, 0.06818181818181818, 0.056818181818181816, 0.056818181818181816, 0.06060606060606061, 0.04924242424242424, 0.05303030303030303, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.04924242424242424, 0.045454545454545456, 0.9393939393939394, 0.07196969696969698, 0.06818181818181818, 0.06439393939393939, 0.07196969696969698, 0.08333333333333333, 0.09090909090909091, 0.0946969696969697, 0.10606060606060606, 0.10984848484848485, 0.11742424242424243, 0.125, 0.125, 0.13636363636363635, 0.14015151515151514, 0.15151515151515152, 0.17424242424242425, 0.19318181818181818, 0.20454545454545456, 0.23484848484848486, 0.7007575757575758, 0.7916666666666666, 0.8295454545454546, 0.8598484848484849, 0.8825757575757576, 0.8977272727272727, 0.9242424242424242, 0.9356060606060606, 0.946969696969697, 0.9393939393939394, 0.928030303030303, 0.9053030303030303, 0.8863636363636364, 0.8712121212121212, 0.8560606060606061, 0.7992424242424242, 0.7803030303030303, 0.6401515151515151, 0.5909090909090909, 0.5340909090909091, 0.5037878787878788, 0.4810606060606061, 0.45454545454545453, 0.4393939393939394, 0.4053030303030303, 0.3939393939393939, 0.38257575757575757, 0.375, 0.35984848484848486, 0.3484848484848485, 0.3409090909090909, 0.3333333333333333, 0.32954545454545453, 0.32196969696969696, 0.3068181818181818, 0.2916666666666667, 0.2803030303030303, 0.2840909090909091, 0.2803030303030303, 0.2727272727272727, 0.25, 0.19318181818181818, 0.19318181818181818, 0.19318181818181818, 0.19318181818181818, 0.19318181818181818, 0.19318181818181818, 0.19318181818181818, 0.19318181818181818, 0.19318181818181818, 0.19696969696969696, 0.19696969696969696, 0.20454545454545456, 0.20454545454545456, 0.20454545454545456, 0.20454545454545456, 0.24621212121212122, 0.3068181818181818, 0.38257575757575757, 0.6515151515151515], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1759.gap.json b/pfam_gap_rates/DUF1759.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e134bd9864110e04e1097ad0611eab360623154
--- /dev/null
+++ b/pfam_gap_rates/DUF1759.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1759", "n_seqs": 1431, "length": 149, "gap_rates": [0.2529699510831586, 0.23689727463312368, 0.23130677847658979, 0.22082459818308875, 0.21174004192872117, 0.20545073375262055, 0.19566736547868624, 0.1914744933612858, 0.1893780573025856, 0.1872816212438854, 0.18588399720475193, 0.18099231306778477, 0.17540181691125087, 0.17470300489168414, 0.1719077568134172, 0.17120894479385046, 0.1816911250873515, 0.1663172606568833, 0.1586303284416492, 0.2948986722571628, 0.18308874912648498, 0.20195667365478687, 0.1970649895178197, 0.15234102026554858, 0.16911250873515024, 0.13976240391334732, 0.13277428371767994, 0.13626834381551362, 0.12159329140461216, 0.11600279524807827, 0.1146051712089448, 0.10831586303284417, 0.10831586303284417, 0.10412299091544375, 0.10552061495457722, 0.1090146750524109, 0.10761705101327743, 0.10412299091544375, 0.10202655485674354, 0.10272536687631027, 0.10062893081761007, 0.09783368273934312, 0.09783368273934312, 0.103424178895877, 0.10412299091544375, 0.103424178895877, 0.10412299091544375, 0.1069182389937107, 0.1090146750524109, 0.13067784765897975, 0.12858141160027953, 0.9489867225716282, 0.9433962264150944, 0.12299091544374563, 0.10621942697414395, 0.10971348707197764, 0.10761705101327743, 0.10971348707197764, 0.11390635918937805, 0.11180992313067785, 0.1146051712089448, 0.11740041928721175, 0.11809923130677848, 0.12368972746331237, 0.1243885394828791, 0.12858141160027953, 0.13067784765897975, 0.13556953179594688, 0.13976240391334732, 0.14046121593291405, 0.143256464011181, 0.14675052410901468, 0.14954577218728163, 0.15164220824598182, 0.15513626834381553, 0.15653389238294899, 0.15723270440251572, 0.15723270440251572, 0.15932914046121593, 0.16002795248078266, 0.16212438853948288, 0.16491963661774983, 0.16701607267645002, 0.17260656883298392, 0.17819706498951782, 0.18378756114605171, 0.18378756114605171, 0.19916142557651992, 0.9406009783368274, 0.3612858141160028, 0.2557651991614256, 0.24598183088749126, 0.22990915443745633, 0.21453529000698812, 0.2180293501048218, 0.21523410202655485, 0.21733053808525507, 0.21523410202655485, 0.2194269741439553, 0.22082459818308875, 0.2236198462613557, 0.22571628232005592, 0.22711390635918938, 0.2292103424178896, 0.23060796645702306, 0.23689727463312368, 0.24248777078965758, 0.25506638714185886, 0.2613556953179595, 0.2655485674353599, 0.2690426275331936, 0.2669461914744934, 0.27113906359189377, 0.27393431167016075, 0.2802236198462614, 0.28791055206149546, 0.29350104821802936, 0.29909154437456326, 0.30677847658979734, 0.3221523410202656, 0.5429769392033543, 0.4996505939902166, 0.352900069881202, 0.3382250174703005, 0.34102026554856746, 0.3403214535290007, 0.3403214535290007, 0.3445143256464011, 0.34591194968553457, 0.3466107617051013, 0.3494060097833683, 0.352900069881202, 0.3549965059399022, 0.35639412997903563, 0.3577917540181691, 0.36268343815513626, 0.3689727463312369, 0.3710691823899371, 0.3801537386443047, 0.3885394828791055, 0.40111809923130676, 0.4835779175401817, 0.4689028651292802, 0.5283018867924528, 0.5918937805730259, 0.6995108315863033, 0.7966457023060797, 0.859538784067086, 0.9315164220824598], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF177.gap.json b/pfam_gap_rates/DUF177.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c4d7b35467e0a0640a54ff50cb01adf2e80f44a5
--- /dev/null
+++ b/pfam_gap_rates/DUF177.gap.json
@@ -0,0 +1 @@
+{"family": "DUF177", "n_seqs": 1698, "length": 135, "gap_rates": [0.4988221436984688, 0.18904593639575973, 0.09422850412249706, 0.061837455830388695, 0.0447585394581861, 0.03121319199057715, 0.028857479387514724, 0.02591283863368669, 0.025323910482921083, 0.02237926972909305, 0.021790341578327443, 0.021790341578327443, 0.02120141342756184, 0.02061248527679623, 0.020023557126030624, 0.01884570082449941, 0.01884570082449941, 0.01884570082449941, 0.01884570082449941, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.016489988221436984, 0.016489988221436984, 0.016489988221436984, 0.0176678445229682, 0.01707891637220259, 0.016489988221436984, 0.023557126030624265, 0.05771495877502945, 0.043580683156654886, 0.03356890459363958, 0.028857479387514724, 0.030035335689045935, 0.03121319199057715, 0.08716136631330977, 0.15606595995288575, 0.17196702002355713, 0.1872791519434629, 0.3669022379269729, 0.5400471142520612, 0.5247349823321554, 0.7190812720848057, 0.8616018845700825, 0.9104829210836278, 0.9411071849234394, 0.9322732626619552, 0.8845700824499411, 0.8451118963486455, 0.6796230859835101, 0.6501766784452296, 0.07891637220259129, 0.04711425206124853, 0.0353356890459364, 0.027090694935217905, 0.020023557126030624, 0.015312131919905771, 0.03297997644287397, 0.0447585394581861, 0.85924617196702, 0.021790341578327443, 0.01060070671378092, 0.02120141342756184, 0.002944640753828033, 0.001177856301531213, 0.001177856301531213, 0.001177856301531213, 0.001177856301531213, 0.001177856301531213, 0.0005889281507656066, 0.0005889281507656066, 0.0005889281507656066, 0.0005889281507656066, 0.0005889281507656066, 0.0005889281507656066, 0.0017667844522968198, 0.002355712603062426, 0.002355712603062426, 0.002355712603062426, 0.0035335689045936395, 0.0035335689045936395, 0.002944640753828033, 0.002944640753828033, 0.0035335689045936395, 0.0035335689045936395, 0.16195524146054183, 0.9216725559481743, 0.04063604240282685, 0.8492343934040048, 0.028857479387514724, 0.022968197879858657, 0.02237926972909305, 0.02591283863368669, 0.6637220259128387, 0.6325088339222615, 0.09422850412249706, 0.07891637220259129, 0.06890459363957598, 0.06772673733804475, 0.0624263839811543, 0.0712603062426384, 0.07361601884570082, 0.12426383981154299, 0.12073027090694935, 0.12367491166077739, 0.1413427561837456, 0.17196702002355713, 0.23851590106007067, 0.428150765606596, 0.8686690223792697, 0.9045936395759717, 0.9299175500588928, 0.8810365135453475, 0.8362779740871613, 0.35217903415783275, 0.30153121319199055, 0.26148409893992935, 0.2061248527679623, 0.17255594817432274, 0.14487632508833923, 0.12249705535924617, 0.10070671378091872, 0.0989399293286219, 0.375736160188457, 0.10306242638398115, 0.10247349823321555, 0.10365135453474676, 0.10600706713780919, 0.11719670200235571, 0.15783274440518258, 0.21672555948174324, 0.7008244994110718], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1830.gap.json b/pfam_gap_rates/DUF1830.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d711da70e5d50b7be0e43b2fc4547fa7b5ab3324
--- /dev/null
+++ b/pfam_gap_rates/DUF1830.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1830", "n_seqs": 111, "length": 66, "gap_rates": [0.05405405405405406, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.04504504504504504, 0.04504504504504504, 0.036036036036036036, 0.02702702702702703, 0.04504504504504504, 0.036036036036036036, 0.02702702702702703, 0.02702702702702703, 0.036036036036036036, 0.018018018018018018, 0.009009009009009009, 0.009009009009009009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009009009009009009, 0.0, 0.0, 0.0, 0.009009009009009009, 0.018018018018018018, 0.018018018018018018, 0.08108108108108109, 0.02702702702702703, 0.018018018018018018, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.0, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.036036036036036036, 0.0990990990990991, 0.5855855855855856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1844.gap.json b/pfam_gap_rates/DUF1844.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7d287b280ab33744fb0d9830077e0b754be3159
--- /dev/null
+++ b/pfam_gap_rates/DUF1844.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1844", "n_seqs": 134, "length": 73, "gap_rates": [0.4701492537313433, 0.2537313432835821, 0.16417910447761194, 0.15671641791044777, 0.14925373134328357, 0.11940298507462686, 0.09701492537313433, 0.09701492537313433, 0.06716417910447761, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.007462686567164179, 0.0, 0.0, 0.0, 0.08208955223880597, 0.029850746268656716, 0.09701492537313433, 0.022388059701492536, 0.022388059701492536, 0.007462686567164179, 0.007462686567164179, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007462686567164179, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007462686567164179, 0.007462686567164179, 0.029850746268656716], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1899.gap.json b/pfam_gap_rates/DUF1899.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95f29fe07da4ade04afdeeacfdb4fb0920d4323f
--- /dev/null
+++ b/pfam_gap_rates/DUF1899.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1899", "n_seqs": 555, "length": 68, "gap_rates": [0.5657657657657658, 0.34234234234234234, 0.1927927927927928, 0.14954954954954955, 0.09009009009009009, 0.08108108108108109, 0.06486486486486487, 0.06306306306306306, 0.04684684684684685, 0.043243243243243246, 0.043243243243243246, 0.03783783783783784, 0.036036036036036036, 0.03423423423423423, 0.03423423423423423, 0.032432432432432434, 0.032432432432432434, 0.03063063063063063, 0.03963963963963964, 0.06846846846846846, 0.05045045045045045, 0.018018018018018018, 0.014414414414414415, 0.014414414414414415, 0.018018018018018018, 0.025225225225225224, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.03063063063063063, 0.8756756756756757, 0.8612612612612612, 0.04684684684684685, 0.03063063063063063, 0.021621621621621623, 0.018018018018018018, 0.016216216216216217, 0.012612612612612612, 0.012612612612612612, 0.005405405405405406, 0.0036036036036036037, 0.0036036036036036037, 0.0036036036036036037, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.007207207207207207, 0.009009009009009009, 0.009009009009009009, 0.010810810810810811, 0.06846846846846846, 0.3387387387387387, 0.016216216216216217, 0.016216216216216217, 0.009009009009009009, 0.012612612612612612, 0.016216216216216217, 0.018018018018018018, 0.018018018018018018, 0.01981981981981982, 0.03963963963963964, 0.08468468468468468, 0.12072072072072072, 0.14054054054054055, 0.16216216216216217], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1926.gap.json b/pfam_gap_rates/DUF1926.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..23b513d5b08abc4f2eaa468e9b35c7cfb374e8f2
--- /dev/null
+++ b/pfam_gap_rates/DUF1926.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1934.gap.json b/pfam_gap_rates/DUF1934.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aeb4e6dbf56e5c4b7842904eb1920eddac658657
--- /dev/null
+++ b/pfam_gap_rates/DUF1934.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1934", "n_seqs": 499, "length": 135, "gap_rates": [0.5270541082164328, 0.3527054108216433, 0.2925851703406814, 0.27655310621242485, 0.25250501002004005, 0.8096192384769539, 0.22645290581162325, 0.21442885771543085, 0.20641282565130262, 0.1623246492985972, 0.12224448897795591, 0.1062124248496994, 0.09619238476953908, 0.08617234468937876, 0.8957915831663327, 0.07615230460921844, 0.06613226452905811, 0.06212424849699399, 0.05811623246492986, 0.05410821643286573, 0.050100200400801605, 0.04408817635270541, 0.04008016032064128, 0.04008016032064128, 0.04008016032064128, 0.03807615230460922, 0.04408817635270541, 0.9118236472945892, 0.04208416833667335, 0.04008016032064128, 0.03807615230460922, 0.12424849699398798, 0.04208416833667335, 0.03807615230460922, 0.03406813627254509, 0.03206412825651302, 0.03206412825651302, 0.03206412825651302, 0.03206412825651302, 0.03206412825651302, 0.04809619238476954, 0.04408817635270541, 0.050100200400801605, 0.12625250501002003, 0.21442885771543085, 0.17835671342685372, 0.2905811623246493, 0.2865731462925852, 0.036072144288577156, 0.028056112224448898, 0.02004008016032064, 0.01603206412825651, 0.012024048096192385, 0.01002004008016032, 0.01002004008016032, 0.9418837675350702, 0.7535070140280561, 0.01002004008016032, 0.01603206412825651, 0.008016032064128256, 0.006012024048096192, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.006012024048096192, 0.004008016032064128, 0.026052104208416832, 0.01002004008016032, 0.012024048096192385, 0.01002004008016032, 0.006012024048096192, 0.004008016032064128, 0.004008016032064128, 0.002004008016032064, 0.002004008016032064, 0.002004008016032064, 0.004008016032064128, 0.004008016032064128, 0.002004008016032064, 0.002004008016032064, 0.002004008016032064, 0.002004008016032064, 0.002004008016032064, 0.002004008016032064, 0.002004008016032064, 0.002004008016032064, 0.002004008016032064, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.006012024048096192, 0.006012024048096192, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.004008016032064128, 0.006012024048096192, 0.006012024048096192, 0.06613226452905811, 0.06212424849699399, 0.03406813627254509, 0.050100200400801605, 0.03406813627254509, 0.7555110220440882, 0.6953907815631263, 0.09819639278557114, 0.0841683366733467, 0.01002004008016032, 0.008016032064128256, 0.008016032064128256, 0.008016032064128256, 0.008016032064128256, 0.008016032064128256, 0.008016032064128256, 0.01002004008016032, 0.012024048096192385, 0.014028056112224449, 0.014028056112224449, 0.014028056112224449, 0.01603206412825651, 0.03206412825651302, 0.04208416833667335, 0.04609218436873747, 0.06012024048096192, 0.07615230460921844, 0.09218436873747494, 0.11222444889779559, 0.24248496993987975, 0.3807615230460922], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1967.gap.json b/pfam_gap_rates/DUF1967.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d0a21f396f000c948f6e6e1c2ed845ef1b26085
--- /dev/null
+++ b/pfam_gap_rates/DUF1967.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1967", "n_seqs": 1012, "length": 76, "gap_rates": [0.36363636363636365, 0.2766798418972332, 0.17786561264822134, 0.1590909090909091, 0.6630434782608695, 0.9387351778656127, 0.8804347826086957, 0.2134387351778656, 0.21739130434782608, 0.1324110671936759, 0.036561264822134384, 0.00691699604743083, 0.010869565217391304, 0.004940711462450593, 0.004940711462450593, 0.003952569169960474, 0.003952569169960474, 0.0029644268774703555, 0.0029644268774703555, 0.005928853754940711, 0.003952569169960474, 0.0029644268774703555, 0.0029644268774703555, 0.0029644268774703555, 0.0029644268774703555, 0.0029644268774703555, 0.0009881422924901185, 0.0009881422924901185, 0.0009881422924901185, 0.0009881422924901185, 0.0009881422924901185, 0.0029644268774703555, 0.0009881422924901185, 0.0009881422924901185, 0.0029644268774703555, 0.0029644268774703555, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0009881422924901185, 0.0009881422924901185, 0.0009881422924901185, 0.001976284584980237, 0.004940711462450593, 0.004940711462450593, 0.004940711462450593, 0.004940711462450593, 0.004940711462450593, 0.004940711462450593, 0.004940711462450593, 0.004940711462450593, 0.005928853754940711, 0.005928853754940711, 0.005928853754940711, 0.00691699604743083, 0.00691699604743083, 0.00691699604743083, 0.8586956521739131, 0.8982213438735178, 0.8646245059288538, 0.8527667984189723, 0.015810276679841896, 0.022727272727272728, 0.03458498023715415, 0.042490118577075096, 0.05434782608695652], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1972.gap.json b/pfam_gap_rates/DUF1972.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbcba5e5f5935961162cd753f0f34f364da4aca3
--- /dev/null
+++ b/pfam_gap_rates/DUF1972.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1985.gap.json b/pfam_gap_rates/DUF1985.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c0da0e580c067492da32b98d079b4af5b629866
--- /dev/null
+++ b/pfam_gap_rates/DUF1985.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1992.gap.json b/pfam_gap_rates/DUF1992.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46e73f8fb7905f9850aa52e7a897aa8d708e2d6b
--- /dev/null
+++ b/pfam_gap_rates/DUF1992.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1992", "n_seqs": 514, "length": 73, "gap_rates": [0.29571984435797666, 0.09727626459143969, 0.06420233463035019, 0.0622568093385214, 0.05642023346303502, 0.04669260700389105, 0.04085603112840467, 0.03696498054474708, 0.03696498054474708, 0.0311284046692607, 0.02529182879377432, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.017509727626459144, 0.019455252918287938, 0.017509727626459144, 0.0311284046692607, 0.08171206225680934, 0.933852140077821, 0.021400778210116732, 0.013618677042801557, 0.0311284046692607, 0.027237354085603113, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.8190661478599222, 0.08365758754863813, 0.048638132295719845, 0.7898832684824902, 0.5486381322957199, 0.45525291828793774, 0.09533073929961089, 0.08949416342412451, 0.06809338521400778, 0.05642023346303502, 0.0311284046692607, 0.027237354085603113, 0.021400778210116732, 0.017509727626459144, 0.01556420233463035, 0.013618677042801557, 0.007782101167315175, 0.007782101167315175, 0.005836575875486381, 0.007782101167315175, 0.009727626459143969, 0.009727626459143969, 0.12062256809338522, 0.1245136186770428, 0.07976653696498054, 0.011673151750972763, 0.011673151750972763, 0.011673151750972763, 0.013618677042801557, 0.021400778210116732, 0.023346303501945526, 0.019455252918287938, 0.019455252918287938, 0.021400778210116732, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.027237354085603113, 0.03501945525291829, 0.048638132295719845, 0.07198443579766536, 0.11478599221789883, 0.17509727626459143, 0.26848249027237353, 0.7198443579766537], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1995.gap.json b/pfam_gap_rates/DUF1995.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3134e65d305a310fcea9963dc25665b1d32da744
--- /dev/null
+++ b/pfam_gap_rates/DUF1995.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2013.gap.json b/pfam_gap_rates/DUF2013.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a40759856ba5532f9404f0bbb230922bf423c18a
--- /dev/null
+++ b/pfam_gap_rates/DUF2013.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2015.gap.json b/pfam_gap_rates/DUF2015.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18377a6bc9072348f823a7be9dfc58fd653615ea
--- /dev/null
+++ b/pfam_gap_rates/DUF2015.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2017.gap.json b/pfam_gap_rates/DUF2017.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c697596ede9b0461f02c34bb1ef1292686f11e36
--- /dev/null
+++ b/pfam_gap_rates/DUF2017.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2017", "n_seqs": 217, "length": 257, "gap_rates": [0.7603686635944701, 0.5023041474654378, 0.30414746543778803, 0.2350230414746544, 0.20276497695852536, 0.18433179723502305, 0.17511520737327188, 0.17511520737327188, 0.17511520737327188, 0.16589861751152074, 0.16589861751152074, 0.16589861751152074, 0.16589861751152074, 0.16589861751152074, 0.16589861751152074, 0.16589861751152074, 0.16589861751152074, 0.16129032258064516, 0.15668202764976957, 0.15668202764976957, 0.15207373271889402, 0.15207373271889402, 0.15207373271889402, 0.15207373271889402, 0.14746543778801843, 0.14746543778801843, 0.14746543778801843, 0.14746543778801843, 0.14746543778801843, 0.14746543778801843, 0.14746543778801843, 0.8755760368663594, 0.880184331797235, 0.880184331797235, 0.9032258064516129, 0.9170506912442397, 0.9262672811059908, 0.9447004608294931, 0.9493087557603687, 0.9493087557603687, 0.9447004608294931, 0.9354838709677419, 0.9216589861751152, 0.9124423963133641, 0.8894009216589862, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2042.gap.json b/pfam_gap_rates/DUF2042.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6603e34ae63ffc15a13a177fa72f70629f1f8ee8
--- /dev/null
+++ b/pfam_gap_rates/DUF2042.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2042", "n_seqs": 200, "length": 300, "gap_rates": [0.32, 0.255, 0.255, 0.245, 0.245, 0.245, 0.24, 0.24, 0.24, 0.24, 0.24, 0.24, 0.24, 0.24, 0.24, 0.24, 0.24, 0.225, 0.225, 0.21, 0.215, 0.215, 0.215, 0.21, 0.21, 0.21, 0.205, 0.195, 0.195, 0.19, 0.19, 0.19, 0.185, 0.185, 0.185, 0.18, 0.175, 0.175, 0.175, 0.8, 0.79, 0.175, 0.175, 0.175, 0.17, 0.165, 0.165, 0.165, 0.165, 0.17, 0.16, 0.16, 0.16, 0.16, 0.16, 0.155, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.145, 0.145, 0.145, 0.145, 0.15, 0.155, 0.35, 0.165, 0.155, 0.155, 0.155, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.155, 0.155, 0.155, 0.155, 0.155, 0.16, 0.16, 0.155, 0.155, 0.155, 0.155, 0.16, 0.16, 0.16, 0.205, 0.17, 0.175, 0.195, 0.945, 0.935, 0.185, 0.175, 0.855, 0.175, 0.165, 0.165, 0.165, 0.16, 0.16, 0.945, 0.155, 0.155, 0.13, 0.13, 0.13, 0.15, 0.15, 0.15, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.135, 0.13, 0.13, 0.13, 0.13, 0.13, 0.13, 0.13, 0.13, 0.13, 0.13, 0.13, 0.125, 0.93, 0.13, 0.125, 0.145, 0.15, 0.155, 0.14, 0.905, 0.13, 0.125, 0.13, 0.13, 0.13, 0.13, 0.13, 0.135, 0.125, 0.67, 0.685, 0.63, 0.12, 0.115, 0.115, 0.115, 0.115, 0.115, 0.11, 0.11, 0.11, 0.11, 0.105, 0.105, 0.105, 0.11, 0.115, 0.115, 0.11, 0.105, 0.11, 0.11, 0.11, 0.11, 0.11, 0.125, 0.115, 0.115, 0.13, 0.125, 0.125, 0.13, 0.13, 0.125, 0.13, 0.13, 0.135, 0.135, 0.775, 0.785, 0.815, 0.815, 0.815, 0.815, 0.815, 0.815, 0.815, 0.815, 0.8, 0.775, 0.77, 0.165, 0.16, 0.155, 0.155, 0.13, 0.13, 0.135, 0.135, 0.13, 0.135, 0.13, 0.13, 0.13, 0.13, 0.14, 0.14, 0.15, 0.15, 0.145, 0.14, 0.14, 0.14, 0.135, 0.135, 0.19, 0.14, 0.14, 0.14, 0.16, 0.355, 0.645, 0.88, 0.715, 0.625, 0.465, 0.135, 0.135, 0.14, 0.15, 0.15, 0.15, 0.15, 0.15, 0.145, 0.145, 0.145, 0.145, 0.145, 0.145, 0.145, 0.145, 0.145, 0.15, 0.15, 0.15, 0.15, 0.15, 0.155, 0.155, 0.165, 0.17, 0.175, 0.175, 0.175, 0.175, 0.18, 0.2, 0.225, 0.24, 0.245, 0.255, 0.285, 0.3, 0.315, 0.345, 0.42], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2063.gap.json b/pfam_gap_rates/DUF2063.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02541f04112bd3bd7b08842f9c3213f4764f5991
--- /dev/null
+++ b/pfam_gap_rates/DUF2063.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2063", "n_seqs": 346, "length": 103, "gap_rates": [0.8034682080924855, 0.3901734104046243, 0.22254335260115607, 0.1791907514450867, 0.13872832369942195, 0.12427745664739884, 0.11560693641618497, 0.11271676300578035, 0.11271676300578035, 0.1069364161849711, 0.1069364161849711, 0.15895953757225434, 0.15028901734104047, 0.08959537572254335, 0.12716763005780346, 0.2023121387283237, 0.3988439306358382, 0.4653179190751445, 0.5751445086705202, 0.8757225433526011, 0.9104046242774566, 0.9421965317919075, 0.9479768786127167, 0.9479768786127167, 0.9421965317919075, 0.9335260115606936, 0.9017341040462428, 0.8179190751445087, 0.5086705202312138, 0.43641618497109824, 0.3786127167630058, 0.1416184971098266, 0.11560693641618497, 0.06069364161849711, 0.0953757225433526, 0.07514450867052024, 0.06647398843930635, 0.06069364161849711, 0.06069364161849711, 0.023121387283236993, 0.9364161849710982, 0.017341040462427744, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.002890173410404624, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002890173410404624, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.008670520231213872, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.014450867052023121, 0.02023121387283237, 0.06358381502890173, 0.12138728323699421], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2064.gap.json b/pfam_gap_rates/DUF2064.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0fcd0b0ebd3b7f962f6f65472dbbc40331c2b7a8
--- /dev/null
+++ b/pfam_gap_rates/DUF2064.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2069.gap.json b/pfam_gap_rates/DUF2069.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d70f2dad80fa2cae4c3497b7dabcb04dc3fec8bb
--- /dev/null
+++ b/pfam_gap_rates/DUF2069.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2069", "n_seqs": 197, "length": 105, "gap_rates": [0.6192893401015228, 0.19289340101522842, 0.15736040609137056, 0.12690355329949238, 0.116751269035533, 0.09137055837563451, 0.07614213197969544, 0.07106598984771574, 0.06598984771573604, 0.06091370558375635, 0.06598984771573604, 0.05583756345177665, 0.050761421319796954, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.03553299492385787, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.030456852791878174, 0.5329949238578681, 0.5380710659898477, 0.10152284263959391, 0.07106598984771574, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.02030456852791878, 0.025380710659898477, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.01015228426395939, 0.005076142131979695, 0.005076142131979695, 0.015228426395939087, 0.025380710659898477, 0.01015228426395939, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.01015228426395939, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005076142131979695, 0.0, 0.0, 0.0, 0.8934010152284264, 0.5888324873096447, 0.25380710659898476, 0.025380710659898477, 0.015228426395939087, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.015228426395939087, 0.015228426395939087, 0.02030456852791878, 0.025380710659898477, 0.04568527918781726, 0.05583756345177665, 0.06091370558375635, 0.07614213197969544, 0.1218274111675127, 0.28426395939086296], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2075.gap.json b/pfam_gap_rates/DUF2075.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b40624e41205e5aef47d1d9183702208db0a570
--- /dev/null
+++ b/pfam_gap_rates/DUF2075.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2127.gap.json b/pfam_gap_rates/DUF2127.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45ddc56ebd3f2f9a92b8a1241436256cb1f23f06
--- /dev/null
+++ b/pfam_gap_rates/DUF2127.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2147.gap.json b/pfam_gap_rates/DUF2147.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f83a4b234243cc14bfcc7c03b522c1028a1f9ee2
--- /dev/null
+++ b/pfam_gap_rates/DUF2147.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2151.gap.json b/pfam_gap_rates/DUF2151.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1cb81a80a15a3494a3ef74a9a269a1c44201f64
--- /dev/null
+++ b/pfam_gap_rates/DUF2151.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2152.gap.json b/pfam_gap_rates/DUF2152.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dab230f336107062e193242fee39bd7d90f1ffad
--- /dev/null
+++ b/pfam_gap_rates/DUF2152.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2179.gap.json b/pfam_gap_rates/DUF2179.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ec6742ee5fc2047b2819cd33411db75bddf2ce6
--- /dev/null
+++ b/pfam_gap_rates/DUF2179.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2179", "n_seqs": 2312, "length": 55, "gap_rates": [0.16306228373702422, 0.05579584775086505, 0.024653979238754325, 0.014273356401384083, 0.012110726643598616, 0.010813148788927335, 0.009515570934256055, 0.008217993079584774, 0.007785467128027681, 0.007785467128027681, 0.007785467128027681, 0.10077854671280277, 0.02032871972318339, 0.009948096885813149, 0.09342560553633218, 0.006055363321799308, 0.0017301038062283738, 0.0017301038062283738, 0.0012975778546712802, 0.0012975778546712802, 0.0012975778546712802, 0.0012975778546712802, 0.0017301038062283738, 0.0017301038062283738, 0.0017301038062283738, 0.0025951557093425604, 0.0025951557093425604, 0.0021626297577854673, 0.0017301038062283738, 0.0017301038062283738, 0.0012975778546712802, 0.0008650519031141869, 0.0008650519031141869, 0.0008650519031141869, 0.0008650519031141869, 0.0012975778546712802, 0.0012975778546712802, 0.0021626297577854673, 0.003027681660899654, 0.007352941176470588, 0.0038927335640138406, 0.003027681660899654, 0.0025951557093425604, 0.0025951557093425604, 0.0025951557093425604, 0.0034602076124567475, 0.004757785467128028, 0.005622837370242215, 0.00865051903114187, 0.01384083044982699, 0.022058823529411766, 0.03892733564013841, 0.0523356401384083, 0.092560553633218, 0.12932525951557095], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF218.gap.json b/pfam_gap_rates/DUF218.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e5332857ed4488be01059ed3b2ec6d11c8be42f
--- /dev/null
+++ b/pfam_gap_rates/DUF218.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2252.gap.json b/pfam_gap_rates/DUF2252.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..960e59e328fecfaa61ae8165be3d17e04ead757b
--- /dev/null
+++ b/pfam_gap_rates/DUF2252.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2252", "n_seqs": 322, "length": 444, "gap_rates": [0.468944099378882, 0.2981366459627329, 0.2111801242236025, 0.18012422360248448, 0.15217391304347827, 0.11490683229813664, 0.08695652173913043, 0.07763975155279502, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.059006211180124224, 0.059006211180124224, 0.052795031055900624, 0.049689440993788817, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.052795031055900624, 0.052795031055900624, 0.052795031055900624, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.046583850931677016, 0.6273291925465838, 0.7080745341614907, 0.8354037267080745, 0.8757763975155279, 0.7453416149068323, 0.6739130434782609, 0.6242236024844721, 0.046583850931677016, 0.049689440993788817, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2269.gap.json b/pfam_gap_rates/DUF2269.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7e5faa0ce5eb350b4bf4b6d3cc9240a675a2754
--- /dev/null
+++ b/pfam_gap_rates/DUF2269.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2269", "n_seqs": 237, "length": 157, "gap_rates": [0.8354430379746836, 0.2911392405063291, 0.12658227848101267, 0.0759493670886076, 0.046413502109704644, 0.046413502109704644, 0.046413502109704644, 0.046413502109704644, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04219409282700422, 0.04219409282700422, 0.046413502109704644, 0.0379746835443038, 0.04219409282700422, 0.04219409282700422, 0.046413502109704644, 0.046413502109704644, 0.16033755274261605, 0.14767932489451477, 0.1308016877637131, 0.1308016877637131, 0.11392405063291139, 0.10548523206751055, 0.0379746835443038, 0.03375527426160337, 0.0379746835443038, 0.02531645569620253, 0.029535864978902954, 0.03375527426160337, 0.02531645569620253, 0.029535864978902954, 0.029535864978902954, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02531645569620253, 0.0379746835443038, 0.029535864978902954, 0.0379746835443038, 0.04219409282700422, 0.0379746835443038, 0.04219409282700422, 0.8987341772151899, 0.890295358649789, 0.03375527426160337, 0.0379746835443038, 0.03375527426160337, 0.029535864978902954, 0.02109704641350211, 0.02109704641350211, 0.02109704641350211, 0.02531645569620253, 0.03375527426160337, 0.03375527426160337, 0.029535864978902954, 0.02109704641350211, 0.016877637130801686, 0.012658227848101266, 0.012658227848101266, 0.02531645569620253, 0.02109704641350211, 0.02531645569620253, 0.016877637130801686, 0.03375527426160337, 0.9493670886075949, 0.9324894514767933, 0.016877637130801686, 0.016877637130801686, 0.05907172995780591, 0.02109704641350211, 0.8312236286919831, 0.02531645569620253, 0.02531645569620253, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.02109704641350211, 0.02531645569620253, 0.02531645569620253, 0.02109704641350211, 0.029535864978902954, 0.03375527426160337, 0.029535864978902954, 0.02109704641350211, 0.02109704641350211, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.08860759493670886, 0.729957805907173, 0.046413502109704644, 0.029535864978902954, 0.029535864978902954, 0.029535864978902954, 0.03375527426160337, 0.02531645569620253, 0.029535864978902954, 0.04219409282700422, 0.04219409282700422, 0.029535864978902954, 0.0970464135021097, 0.06751054852320675, 0.05907172995780591, 0.10548523206751055, 0.06751054852320675, 0.05907172995780591, 0.16877637130801687, 0.25316455696202533, 0.869198312236287, 0.1308016877637131, 0.11392405063291139, 0.10126582278481013, 0.08860759493670886, 0.08438818565400844, 0.0759493670886076, 0.05063291139240506, 0.0379746835443038, 0.04219409282700422, 0.04219409282700422, 0.03375527426160337, 0.0379746835443038, 0.0379746835443038, 0.03375527426160337, 0.0379746835443038, 0.0379746835443038, 0.03375527426160337, 0.0379746835443038, 0.0379746835443038, 0.04219409282700422, 0.046413502109704644, 0.046413502109704644, 0.0379746835443038, 0.0379746835443038, 0.04219409282700422, 0.0379746835443038, 0.05063291139240506, 0.05063291139240506, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.06329113924050633, 0.08860759493670886, 0.1940928270042194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2294.gap.json b/pfam_gap_rates/DUF2294.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ceb1bb990198ef44dd74a27ed188868bbb111cc3
--- /dev/null
+++ b/pfam_gap_rates/DUF2294.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2294", "n_seqs": 277, "length": 113, "gap_rates": [0.7220216606498195, 0.5054151624548736, 0.4223826714801444, 0.2996389891696751, 0.22021660649819494, 0.17689530685920576, 0.11913357400722022, 0.09747292418772563, 0.07581227436823104, 0.06859205776173286, 0.06859205776173286, 0.06859205776173286, 0.06498194945848375, 0.06498194945848375, 0.06498194945848375, 0.05776173285198556, 0.05776173285198556, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.02527075812274368, 0.02527075812274368, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.9458483754512635, 0.40794223826714804, 0.09025270758122744, 0.007220216606498195, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.007220216606498195, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.007220216606498195, 0.02527075812274368, 0.007220216606498195, 0.851985559566787, 0.01444043321299639, 0.018050541516245487, 0.02888086642599278, 0.021660649819494584, 0.010830324909747292, 0.007220216606498195, 0.007220216606498195, 0.010830324909747292, 0.010830324909747292, 0.010830324909747292, 0.010830324909747292, 0.010830324909747292, 0.010830324909747292, 0.010830324909747292, 0.010830324909747292, 0.010830324909747292, 0.01444043321299639, 0.01444043321299639, 0.01444043321299639, 0.01444043321299639, 0.01444043321299639, 0.01444043321299639, 0.018050541516245487, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.02527075812274368, 0.02888086642599278, 0.032490974729241874, 0.036101083032490974, 0.039711191335740074, 0.04332129963898917, 0.06498194945848375, 0.09386281588447654, 0.18411552346570398, 0.296028880866426, 0.6823104693140795], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2333.gap.json b/pfam_gap_rates/DUF2333.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..886344038ef11ba30c6c5927d328e74a55709cc8
--- /dev/null
+++ b/pfam_gap_rates/DUF2333.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2384.gap.json b/pfam_gap_rates/DUF2384.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..003e71dfd75907a92023efaeaceddf2c4dcef725
--- /dev/null
+++ b/pfam_gap_rates/DUF2384.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2387.gap.json b/pfam_gap_rates/DUF2387.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30eb881d7e5e5348f2f503c374cacd747c2bfd00
--- /dev/null
+++ b/pfam_gap_rates/DUF2387.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2387", "n_seqs": 101, "length": 78, "gap_rates": [0.6138613861386139, 0.1188118811881188, 0.09900990099009901, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.009900990099009901, 0.0297029702970297, 0.0297029702970297, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.8811881188118812, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.36633663366336633, 0.32673267326732675, 0.1782178217821782, 0.18811881188118812, 0.18811881188118812, 0.24752475247524752, 0.27722772277227725, 0.31683168316831684, 0.3564356435643564, 0.37623762376237624, 0.38613861386138615, 0.46534653465346537, 0.5346534653465347, 0.5346534653465347, 0.5445544554455446, 0.5643564356435643, 0.5742574257425742, 0.9306930693069307, 0.900990099009901, 0.6633663366336634, 0.6237623762376238, 0.6435643564356436, 0.6534653465346535, 0.6633663366336634, 0.6831683168316832, 0.6831683168316832, 0.6831683168316832, 0.7128712871287128, 0.7227722772277227, 0.7326732673267327, 0.7821782178217822, 0.8910891089108911], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2423.gap.json b/pfam_gap_rates/DUF2423.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c4cb4935ef98293bfdab161bf5e5872355b136a
--- /dev/null
+++ b/pfam_gap_rates/DUF2423.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2423", "n_seqs": 140, "length": 47, "gap_rates": [0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9, 0.9, 0.7428571428571429, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007142857142857143, 0.007142857142857143, 0.014285714285714285, 0.02142857142857143, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.03571428571428571, 0.05, 0.09285714285714286, 0.1, 0.1357142857142857, 0.18571428571428572, 0.32857142857142857, 0.4357142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2439.gap.json b/pfam_gap_rates/DUF2439.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c94addf950440a8bb0a572e384d8e678b2957f4d
--- /dev/null
+++ b/pfam_gap_rates/DUF2439.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2459.gap.json b/pfam_gap_rates/DUF2459.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0dda942324aeb2fd4b071d266bc86dae4adaae3
--- /dev/null
+++ b/pfam_gap_rates/DUF2459.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2462.gap.json b/pfam_gap_rates/DUF2462.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d580a8c64ce48f205991662bae95214e06f24611
--- /dev/null
+++ b/pfam_gap_rates/DUF2462.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2462", "n_seqs": 231, "length": 96, "gap_rates": [0.08658008658008658, 0.08658008658008658, 0.08225108225108226, 0.07792207792207792, 0.8311688311688312, 0.8181818181818182, 0.12987012987012986, 0.07792207792207792, 0.07792207792207792, 0.08658008658008658, 0.08658008658008658, 0.1038961038961039, 0.7445887445887446, 0.8008658008658008, 0.8484848484848485, 0.948051948051948, 0.9393939393939394, 0.8138528138528138, 0.7705627705627706, 0.7142857142857143, 0.12554112554112554, 0.37662337662337664, 0.3939393939393939, 0.7272727272727273, 0.9437229437229437, 0.9134199134199135, 0.6017316017316018, 0.12554112554112554, 0.06493506493506493, 0.047619047619047616, 0.04329004329004329, 0.04329004329004329, 0.03896103896103896, 0.03896103896103896, 0.047619047619047616, 0.047619047619047616, 0.03463203463203463, 0.025974025974025976, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.7922077922077922, 0.03463203463203463, 0.030303030303030304, 0.025974025974025976, 0.021645021645021644, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.11255411255411256, 0.11255411255411256, 0.030303030303030304, 0.047619047619047616, 0.0735930735930736, 0.06060606060606061, 0.948051948051948, 0.017316017316017316, 0.012987012987012988, 0.008658008658008658, 0.008658008658008658, 0.004329004329004329, 0.025974025974025976, 0.03463203463203463, 0.012987012987012988, 0.012987012987012988, 0.008658008658008658, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.4199134199134199, 0.45021645021645024, 0.7056277056277056, 0.8744588744588745, 0.6406926406926406, 0.12554112554112554, 0.12554112554112554, 0.1341991341991342, 0.13852813852813853, 0.13852813852813853, 0.1471861471861472, 0.17316017316017315, 0.3463203463203463, 0.5454545454545454, 0.7402597402597403], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2465.gap.json b/pfam_gap_rates/DUF2465.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8de7a2decae1e171d45356f94ca80aed8ffdd4e
--- /dev/null
+++ b/pfam_gap_rates/DUF2465.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2499.gap.json b/pfam_gap_rates/DUF2499.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d627265f1fca74b9038a05aca6fb7470cc71809
--- /dev/null
+++ b/pfam_gap_rates/DUF2499.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2499", "n_seqs": 126, "length": 89, "gap_rates": [0.2777777777777778, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11904761904761904, 0.10317460317460317, 0.10317460317460317, 0.10317460317460317, 0.10317460317460317, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.0873015873015873, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.06349206349206349, 0.06349206349206349, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.03968253968253968, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.09523809523809523, 0.09523809523809523, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.03968253968253968, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.06349206349206349, 0.06349206349206349, 0.07936507936507936, 0.12698412698412698, 0.6587301587301587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2508.gap.json b/pfam_gap_rates/DUF2508.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..069892dc0881b5d8d071f75fa7ce854db5ca3ce8
--- /dev/null
+++ b/pfam_gap_rates/DUF2508.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF258.gap.json b/pfam_gap_rates/DUF258.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dcea211bcbe1c7eb9390169c643aa2a7338931ea
--- /dev/null
+++ b/pfam_gap_rates/DUF258.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2600.gap.json b/pfam_gap_rates/DUF2600.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba4ecc2ebdf7ae3440dc41597b35f35422d91f68
--- /dev/null
+++ b/pfam_gap_rates/DUF2600.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2634.gap.json b/pfam_gap_rates/DUF2634.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d734860b738efdf5dd26aa934ff5fd2d7ff4084b
--- /dev/null
+++ b/pfam_gap_rates/DUF2634.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2634", "n_seqs": 156, "length": 108, "gap_rates": [0.5576923076923077, 0.40384615384615385, 0.28205128205128205, 0.28205128205128205, 0.27564102564102566, 0.26282051282051283, 0.24358974358974358, 0.21153846153846154, 0.19230769230769232, 0.1858974358974359, 0.3525641025641026, 0.3333333333333333, 0.3076923076923077, 0.2948717948717949, 0.5384615384615384, 0.26282051282051283, 0.20512820512820512, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.03205128205128205, 0.0641025641025641, 0.0, 0.01282051282051282, 0.019230769230769232, 0.0, 0.8910256410256411, 0.0, 0.0, 0.0, 0.0, 0.02564102564102564, 0.02564102564102564, 0.03205128205128205, 0.02564102564102564, 0.02564102564102564, 0.01282051282051282, 0.01282051282051282, 0.019230769230769232, 0.5448717948717948, 0.5384615384615384, 0.9423076923076923, 0.11538461538461539, 0.09615384615384616, 0.057692307692307696, 0.03205128205128205, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.01282051282051282, 0.00641025641025641, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.02564102564102564, 0.03205128205128205, 0.04487179487179487, 0.07051282051282051, 0.8525641025641025, 0.07051282051282051, 0.08974358974358974, 0.08974358974358974, 0.10256410256410256, 0.1282051282051282, 0.1794871794871795, 0.38461538461538464], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2789.gap.json b/pfam_gap_rates/DUF2789.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96d7ba25231fe0f9544410e1f3a52eb988fd9b59
--- /dev/null
+++ b/pfam_gap_rates/DUF2789.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2789", "n_seqs": 103, "length": 75, "gap_rates": [0.1650485436893204, 0.1553398058252427, 0.11650485436893204, 0.06796116504854369, 0.04854368932038835, 0.038834951456310676, 0.038834951456310676, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3786407766990291, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.038834951456310676], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2802.gap.json b/pfam_gap_rates/DUF2802.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5e8fd796b82ff169372598d65f761353621ed23
--- /dev/null
+++ b/pfam_gap_rates/DUF2802.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2802", "n_seqs": 108, "length": 80, "gap_rates": [0.5277777777777778, 0.32407407407407407, 0.24074074074074073, 0.18518518518518517, 0.14814814814814814, 0.1388888888888889, 0.12962962962962962, 0.08333333333333333, 0.08333333333333333, 0.07407407407407407, 0.07407407407407407, 0.06481481481481481, 0.06481481481481481, 0.05555555555555555, 0.05555555555555555, 0.08333333333333333, 0.08333333333333333, 0.07407407407407407, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.027777777777777776, 0.8148148148148148, 0.8333333333333334, 0.8611111111111112, 0.8888888888888888, 0.9074074074074074, 0.9259259259259259, 0.8888888888888888, 0.8611111111111112, 0.8425925925925926, 0.8148148148148148, 0.8148148148148148, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.9351851851851852, 0.07407407407407407, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.009259259259259259, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.027777777777777776, 0.3148148148148148], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2838.gap.json b/pfam_gap_rates/DUF2838.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08382f9c29ec5414a3095e268df10252730bd6a4
--- /dev/null
+++ b/pfam_gap_rates/DUF2838.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2838", "n_seqs": 259, "length": 116, "gap_rates": [0.32432432432432434, 0.14671814671814673, 0.13513513513513514, 0.13127413127413126, 0.12355212355212356, 0.11583011583011583, 0.11583011583011583, 0.11583011583011583, 0.11583011583011583, 0.10810810810810811, 0.10038610038610038, 0.10038610038610038, 0.09652509652509653, 0.09652509652509653, 0.09266409266409266, 0.0888030888030888, 0.0888030888030888, 0.0888030888030888, 0.08494208494208494, 0.07722007722007722, 0.08108108108108109, 0.07722007722007722, 0.07722007722007722, 0.0694980694980695, 0.0694980694980695, 0.0694980694980695, 0.0694980694980695, 0.0694980694980695, 0.0694980694980695, 0.0694980694980695, 0.0694980694980695, 0.0694980694980695, 0.0694980694980695, 0.0694980694980695, 0.06563706563706563, 0.06563706563706563, 0.06563706563706563, 0.06563706563706563, 0.06563706563706563, 0.06563706563706563, 0.06177606177606178, 0.05791505791505792, 0.05791505791505792, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05791505791505792, 0.05791505791505792, 0.05791505791505792, 0.05405405405405406, 0.04247104247104247, 0.04633204633204633, 0.05019305019305019, 0.05405405405405406, 0.05405405405405406, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04247104247104247, 0.03861003861003861, 0.03861003861003861, 0.06563706563706563, 0.9343629343629344, 0.9382239382239382, 0.9305019305019305, 0.05405405405405406, 0.05019305019305019, 0.9305019305019305, 0.9266409266409267, 0.04247104247104247, 0.04247104247104247, 0.04247104247104247, 0.04633204633204633, 0.04633204633204633, 0.04247104247104247, 0.04247104247104247, 0.03861003861003861, 0.03861003861003861, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03474903474903475, 0.03088803088803089, 0.03861003861003861, 0.04247104247104247, 0.04247104247104247, 0.04247104247104247, 0.04247104247104247, 0.04633204633204633, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.06177606177606178, 0.06177606177606178, 0.06563706563706563, 0.07722007722007722, 0.15057915057915058], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2871.gap.json b/pfam_gap_rates/DUF2871.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30208a4d6cf85a4e8042edd92c56cc8f20f1c1b1
--- /dev/null
+++ b/pfam_gap_rates/DUF2871.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2871", "n_seqs": 114, "length": 136, "gap_rates": [0.3333333333333333, 0.23684210526315788, 0.15789473684210525, 0.09649122807017543, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03508771929824561, 0.03508771929824561, 0.8596491228070176, 0.8421052631578947, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03508771929824561, 0.05263157894736842, 0.043859649122807015, 0.03508771929824561, 0.03508771929824561, 0.9473684210526315, 0.08771929824561403, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.05263157894736842, 0.03508771929824561, 0.03508771929824561, 0.07017543859649122, 0.03508771929824561, 0.03508771929824561, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.43859649122807015, 0.4298245614035088, 0.35964912280701755, 0.3508771929824561, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.07017543859649122, 0.08771929824561403, 0.15789473684210525, 0.3157894736842105], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2909.gap.json b/pfam_gap_rates/DUF2909.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..450e5615fa9019db4a0bd6677a82a044be539163
--- /dev/null
+++ b/pfam_gap_rates/DUF2909.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2909", "n_seqs": 187, "length": 66, "gap_rates": [0.1925133689839572, 0.09090909090909091, 0.0374331550802139, 0.03208556149732621, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.0106951871657754, 0.0053475935828877, 0.0053475935828877, 0.8609625668449198, 0.8877005347593583, 0.8770053475935828, 0.8556149732620321, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.058823529411764705, 0.8502673796791443, 0.7967914438502673, 0.016042780748663103, 0.0053475935828877, 0.0053475935828877, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0106951871657754, 0.0106951871657754, 0.016042780748663103, 0.0213903743315508, 0.0481283422459893, 0.1497326203208556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2924.gap.json b/pfam_gap_rates/DUF2924.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20d42dfc81b20201e642751c9222c6fb808f82a0
--- /dev/null
+++ b/pfam_gap_rates/DUF2924.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2924", "n_seqs": 161, "length": 168, "gap_rates": [0.3416149068322981, 0.2360248447204969, 0.17391304347826086, 0.15527950310559005, 0.14906832298136646, 0.14906832298136646, 0.14906832298136646, 0.14285714285714285, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.10559006211180125, 0.10559006211180125, 0.09316770186335403, 0.8571428571428571, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08074534161490683, 0.08695652173913043, 0.08074534161490683, 0.08695652173913043, 0.08074534161490683, 0.08074534161490683, 0.9316770186335404, 0.9316770186335404, 0.9316770186335404, 0.9316770186335404, 0.07453416149068323, 0.07453416149068323, 0.08074534161490683, 0.06832298136645963, 0.062111801242236024, 0.055900621118012424, 0.049689440993788817, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.055900621118012424, 0.055900621118012424, 0.062111801242236024, 0.5279503105590062, 0.8260869565217391, 0.9192546583850931, 0.9254658385093167, 0.9440993788819876, 0.9440993788819876, 0.9440993788819876, 0.9440993788819876, 0.9316770186335404, 0.9254658385093167, 0.8385093167701864, 0.5900621118012422, 0.4906832298136646, 0.36645962732919257, 0.37267080745341613, 0.3167701863354037, 0.18633540372670807, 0.18012422360248448, 0.15527950310559005, 0.13043478260869565, 0.10559006211180125, 0.07453416149068323, 0.055900621118012424, 0.062111801242236024, 0.062111801242236024, 0.062111801242236024, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.8881987577639752, 0.8944099378881988, 0.9006211180124224, 0.9130434782608695, 0.9130434782608695, 0.9192546583850931, 0.9254658385093167, 0.9440993788819876, 0.9192546583850931, 0.9192546583850931, 0.9130434782608695, 0.906832298136646, 0.8944099378881988, 0.8944099378881988, 0.8757763975155279, 0.11180124223602485, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.031055900621118012, 0.024844720496894408, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.7515527950310559, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.024844720496894408, 0.031055900621118012, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.06832298136645963, 0.08074534161490683, 0.3167701863354037], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2927.gap.json b/pfam_gap_rates/DUF2927.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0c4c90d248ed0eaab91d78dab509414c67d9cff
--- /dev/null
+++ b/pfam_gap_rates/DUF2927.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2946.gap.json b/pfam_gap_rates/DUF2946.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b278e0d7f3ca5824b46ecfe451eca09ab174386f
--- /dev/null
+++ b/pfam_gap_rates/DUF2946.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2946", "n_seqs": 149, "length": 156, "gap_rates": [0.6912751677852349, 0.3825503355704698, 0.2214765100671141, 0.1610738255033557, 0.1342281879194631, 0.09395973154362416, 0.8590604026845637, 0.06711409395973154, 0.06040268456375839, 0.06040268456375839, 0.0738255033557047, 0.8926174496644296, 0.9194630872483222, 0.9395973154362416, 0.8993288590604027, 0.8523489932885906, 0.06040268456375839, 0.06040268456375839, 0.8993288590604027, 0.040268456375838924, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.040268456375838924, 0.7248322147651006, 0.87248322147651, 0.912751677852349, 0.9395973154362416, 0.8926174496644296, 0.8523489932885906, 0.4429530201342282, 0.3624161073825503, 0.20134228187919462, 0.1476510067114094, 0.12080536912751678, 0.09395973154362416, 0.09395973154362416, 0.087248322147651, 0.0738255033557047, 0.06711409395973154, 0.06040268456375839, 0.06040268456375839, 0.040268456375838924, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.053691275167785234, 0.06040268456375839, 0.5973154362416108, 0.7248322147651006, 0.8187919463087249, 0.8523489932885906, 0.8791946308724832, 0.8993288590604027, 0.912751677852349, 0.9194630872483222, 0.9395973154362416, 0.9395973154362416, 0.9463087248322147, 0.9395973154362416, 0.9395973154362416, 0.9194630872483222, 0.9060402684563759, 0.8993288590604027, 0.87248322147651, 0.8456375838926175, 0.785234899328859, 0.6912751677852349, 0.5503355704697986, 0.4429530201342282, 0.33557046979865773, 0.28187919463087246, 0.2080536912751678, 0.1476510067114094, 0.08053691275167785, 0.040268456375838924, 0.020134228187919462, 0.006711409395973154, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006711409395973154, 0.006711409395973154, 0.8926174496644296, 0.0, 0.006711409395973154, 0.020134228187919462, 0.020134228187919462, 0.03355704697986577, 0.06711409395973154, 0.053691275167785234, 0.06711409395973154, 0.053691275167785234, 0.06711409395973154, 0.9328859060402684, 0.18791946308724833, 0.11409395973154363, 0.06040268456375839, 0.040268456375838924, 0.03355704697986577, 0.026845637583892617, 0.026845637583892617, 0.03355704697986577, 0.03355704697986577, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.03355704697986577, 0.06711409395973154, 0.09395973154362416, 0.0738255033557047, 0.053691275167785234, 0.0738255033557047, 0.08053691275167785, 0.06040268456375839, 0.06040268456375839, 0.0738255033557047, 0.087248322147651, 0.09395973154362416, 0.09395973154362416, 0.10738255033557047, 0.12080536912751678, 0.1610738255033557, 0.8120805369127517, 0.9463087248322147, 0.8791946308724832, 0.6040268456375839, 0.087248322147651, 0.087248322147651, 0.087248322147651, 0.10067114093959731], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2948.gap.json b/pfam_gap_rates/DUF2948.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63681d3db89f79966c45c6846b82e9c4eb85bac3
--- /dev/null
+++ b/pfam_gap_rates/DUF2948.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2948", "n_seqs": 128, "length": 148, "gap_rates": [0.0859375, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.59375, 0.875, 0.921875, 0.890625, 0.8515625, 0.5546875, 0.4296875, 0.2890625, 0.2265625, 0.125, 0.0546875, 0.03125, 0.0078125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0234375, 0.0625, 0.015625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.078125, 0.0703125, 0.0703125, 0.0703125, 0.0859375, 0.8828125, 0.0234375, 0.03125, 0.015625, 0.015625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0078125, 0.0234375, 0.640625, 0.640625, 0.03125, 0.03125, 0.0390625, 0.0390625, 0.0390625, 0.046875, 0.046875, 0.046875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2997.gap.json b/pfam_gap_rates/DUF2997.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0297db8ae2427fe70a72acd7807eab4e11d39609
--- /dev/null
+++ b/pfam_gap_rates/DUF2997.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2997", "n_seqs": 126, "length": 48, "gap_rates": [0.07936507936507936, 0.031746031746031744, 0.015873015873015872, 0.015873015873015872, 0.031746031746031744, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007936507936507936, 0.007936507936507936, 0.023809523809523808, 0.8412698412698413, 0.007936507936507936, 0.0, 0.0, 0.0, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.12698412698412698], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3017.gap.json b/pfam_gap_rates/DUF3017.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b3b699dc12e5f2ef687facdd6e35432a610aee0
--- /dev/null
+++ b/pfam_gap_rates/DUF3017.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3017", "n_seqs": 156, "length": 74, "gap_rates": [0.6602564102564102, 0.3076923076923077, 0.16666666666666666, 0.12179487179487179, 0.08974358974358974, 0.0641025641025641, 0.04487179487179487, 0.038461538461538464, 0.038461538461538464, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.02564102564102564, 0.019230769230769232, 0.03205128205128205, 0.01282051282051282, 0.01282051282051282, 0.00641025641025641, 0.00641025641025641, 0.01282051282051282, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.16025641025641027, 0.16666666666666666, 0.019230769230769232, 0.01282051282051282, 0.08333333333333333, 0.03205128205128205, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.07051282051282051, 0.09615384615384616, 0.1794871794871795, 0.5961538461538461], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3048.gap.json b/pfam_gap_rates/DUF3048.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..291c96d899e8c08b4abcb8d14356f3b85d5e3c20
--- /dev/null
+++ b/pfam_gap_rates/DUF3048.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF3126.gap.json b/pfam_gap_rates/DUF3126.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2e6e3d92f67eb8846e61ee9e6f18db0b3b3398f
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diff --git a/pfam_gap_rates/DUF3127.gap.json b/pfam_gap_rates/DUF3127.gap.json
new file mode 100644
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diff --git a/pfam_gap_rates/DUF3292.gap.json b/pfam_gap_rates/DUF3292.gap.json
new file mode 100644
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diff --git a/pfam_gap_rates/DUF3301.gap.json b/pfam_gap_rates/DUF3301.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b43ec560d9e608724f0f22ee77af4814f9ad446d
--- /dev/null
+++ b/pfam_gap_rates/DUF3301.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3301", "n_seqs": 126, "length": 96, "gap_rates": [0.9285714285714286, 0.2698412698412698, 0.09523809523809523, 0.047619047619047616, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.49206349206349204, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.023809523809523808, 0.031746031746031744, 0.1746031746031746, 0.2698412698412698, 0.3888888888888889, 0.047619047619047616, 0.03968253968253968, 0.031746031746031744, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.05555555555555555, 0.10317460317460317, 0.24603174603174602, 0.6428571428571429], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3311.gap.json b/pfam_gap_rates/DUF3311.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1321eced3da981473e7e340ca8a70de2dbd401ef
--- /dev/null
+++ b/pfam_gap_rates/DUF3311.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3311", "n_seqs": 219, "length": 60, "gap_rates": [0.5570776255707762, 0.182648401826484, 0.1141552511415525, 0.0958904109589041, 0.0639269406392694, 0.0547945205479452, 0.4748858447488584, 0.0730593607305936, 0.0365296803652968, 0.0228310502283105, 0.0273972602739726, 0.0228310502283105, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0091324200913242, 0.0136986301369863, 0.0136986301369863, 0.0182648401826484, 0.0273972602739726, 0.0319634703196347, 0.0639269406392694, 0.1004566210045662, 0.136986301369863, 0.182648401826484, 0.2511415525114155, 0.3607305936073059, 0.4748858447488584, 0.5799086757990868, 0.6757990867579908, 0.8356164383561644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3337.gap.json b/pfam_gap_rates/DUF3337.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff566c189cc7702d1a6298948eb2a710f57846a0
--- /dev/null
+++ b/pfam_gap_rates/DUF3337.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3337", "n_seqs": 280, "length": 218, "gap_rates": [0.44285714285714284, 0.325, 0.29285714285714287, 0.29285714285714287, 0.29285714285714287, 0.2892857142857143, 0.2892857142857143, 0.2892857142857143, 0.2892857142857143, 0.2892857142857143, 0.2892857142857143, 0.2892857142857143, 0.7571428571428571, 0.75, 0.55, 0.5321428571428571, 0.5142857142857142, 0.29285714285714287, 0.2857142857142857, 0.2857142857142857, 0.28214285714285714, 0.2785714285714286, 0.2785714285714286, 0.275, 0.275, 0.26785714285714285, 0.26071428571428573, 0.26071428571428573, 0.26071428571428573, 0.26785714285714285, 0.275, 0.7357142857142858, 0.7285714285714285, 0.26071428571428573, 0.2392857142857143, 0.21428571428571427, 0.21071428571428572, 0.2, 0.14642857142857144, 0.10357142857142858, 0.08571428571428572, 0.07142857142857142, 0.06785714285714285, 0.06785714285714285, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.060714285714285714, 0.060714285714285714, 0.05714285714285714, 0.075, 0.06785714285714285, 0.07142857142857142, 0.06785714285714285, 0.3392857142857143, 0.09642857142857143, 0.2785714285714286, 0.9392857142857143, 0.9214285714285714, 0.06785714285714285, 0.060714285714285714, 0.060714285714285714, 0.05714285714285714, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05, 0.05, 0.05, 0.20357142857142857, 0.20714285714285716, 0.2392857142857143, 0.375, 0.3821428571428571, 0.5214285714285715, 0.49642857142857144, 0.4857142857142857, 0.9214285714285714, 0.925, 0.925, 0.9321428571428572, 0.9357142857142857, 0.9392857142857143, 0.9357142857142857, 0.9321428571428572, 0.9321428571428572, 0.925, 0.9214285714285714, 0.9142857142857143, 0.44642857142857145, 0.4, 0.38571428571428573, 0.30714285714285716, 0.19285714285714287, 0.2571428571428571, 0.2714285714285714, 0.8392857142857143, 0.9464285714285714, 0.7321428571428571, 0.3142857142857143, 0.1392857142857143, 0.039285714285714285, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.039285714285714285, 0.03214285714285714, 0.03214285714285714, 0.03571428571428571, 0.03571428571428571, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.02857142857142857, 0.02857142857142857, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03571428571428571, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.05714285714285714, 0.07857142857142857, 0.08214285714285714, 0.08571428571428572, 0.09642857142857143, 0.125, 0.14642857142857144, 0.31785714285714284, 0.48928571428571427, 0.49642857142857144, 0.5214285714285715, 0.5321428571428571, 0.5678571428571428, 0.6607142857142857, 0.7, 0.7357142857142858, 0.7607142857142857, 0.8071428571428572, 0.825, 0.8714285714285714, 0.8857142857142857, 0.9357142857142857, 0.9428571428571428, 0.95, 0.95, 0.9392857142857143, 0.925, 0.8785714285714286, 0.8464285714285714, 0.8178571428571428, 0.775, 0.7535714285714286, 0.7178571428571429, 0.6892857142857143, 0.5821428571428572, 0.5535714285714286, 0.5285714285714286, 0.5071428571428571, 0.4928571428571429, 0.4642857142857143, 0.425, 0.5142857142857142, 0.49642857142857144, 0.4357142857142857, 0.34285714285714286, 0.23214285714285715, 0.18571428571428572, 0.13214285714285715, 0.09642857142857143, 0.08571428571428572, 0.07857142857142857, 0.06785714285714285, 0.06785714285714285, 0.06785714285714285, 0.06785714285714285, 0.07142857142857142, 0.07142857142857142, 0.06785714285714285, 0.06785714285714285, 0.06428571428571428, 0.06428571428571428, 0.060714285714285714, 0.075, 0.1, 0.10357142857142858, 0.10714285714285714, 0.11785714285714285, 0.11785714285714285, 0.125, 0.125, 0.125, 0.125, 0.13214285714285715, 0.1357142857142857, 0.1357142857142857, 0.1392857142857143, 0.1357142857142857, 0.1357142857142857, 0.1357142857142857, 0.1392857142857143, 0.1392857142857143, 0.14285714285714285, 0.1392857142857143, 0.1392857142857143, 0.14642857142857144, 0.15357142857142858, 0.15357142857142858, 0.15714285714285714, 0.175, 0.8321428571428572], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3338.gap.json b/pfam_gap_rates/DUF3338.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2defb797050077a935155f432fe700abc71df944
--- /dev/null
+++ b/pfam_gap_rates/DUF3338.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3338", "n_seqs": 125, "length": 146, "gap_rates": [0.728, 0.536, 0.536, 0.536, 0.536, 0.52, 0.488, 0.472, 0.456, 0.448, 0.44, 0.432, 0.416, 0.376, 0.368, 0.352, 0.344, 0.328, 0.32, 0.312, 0.28, 0.272, 0.248, 0.216, 0.192, 0.192, 0.144, 0.224, 0.2, 0.936, 0.224, 0.208, 0.2, 0.072, 0.072, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.064, 0.064, 0.064, 0.064, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.056, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.872, 0.872, 0.056, 0.064, 0.064, 0.056, 0.056, 0.08, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.08, 0.08, 0.088, 0.096, 0.088, 0.088, 0.088, 0.088, 0.088, 0.128, 0.256, 0.104, 0.096, 0.104, 0.232, 0.872, 0.904, 0.928, 0.912, 0.896, 0.824, 0.216, 0.944, 0.128, 0.128, 0.168, 0.304, 0.136, 0.136, 0.128, 0.128, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.136, 0.144, 0.144, 0.144, 0.144, 0.16, 0.16, 0.184, 0.208, 0.224, 0.336, 0.64], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3340.gap.json b/pfam_gap_rates/DUF3340.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90056afa08070a9192294c2e981424bb9159bce4
--- /dev/null
+++ b/pfam_gap_rates/DUF3340.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3340", "n_seqs": 296, "length": 165, "gap_rates": [0.5641891891891891, 0.24662162162162163, 0.12837837837837837, 0.057432432432432436, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.006756756756756757, 0.006756756756756757, 0.12837837837837837, 0.02702702702702703, 0.04054054054054054, 0.847972972972973, 0.060810810810810814, 0.030405405405405407, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0033783783783783786, 0.0, 0.0, 0.0033783783783783786, 0.0033783783783783786, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.016891891891891893, 0.0033783783783783786, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.010135135135135136, 0.8918918918918919, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.2635135135135135, 0.2533783783783784, 0.25, 0.23648648648648649, 0.22972972972972974, 0.23648648648648649, 0.23986486486486486, 0.02364864864864865, 0.02027027027027027, 0.02027027027027027, 0.02364864864864865, 0.02364864864864865, 0.02364864864864865, 0.02702702702702703, 0.02702702702702703, 0.9222972972972973, 0.10810810810810811, 0.09797297297297297, 0.08445945945945946, 0.060810810810810814, 0.04391891891891892, 0.04391891891891892, 0.0472972972972973, 0.0472972972972973, 0.16554054054054054, 0.16554054054054054, 0.7263513513513513, 0.17567567567567569, 0.2195945945945946, 0.6013513513513513, 0.5912162162162162, 0.597972972972973, 0.581081081081081, 0.5641891891891891, 0.5236486486486487, 0.5168918918918919, 0.5033783783783784, 0.5135135135135135, 0.527027027027027, 0.5236486486486487, 0.527027027027027, 0.5236486486486487, 0.9222972972972973, 0.9425675675675675, 0.9358108108108109, 0.8614864864864865, 0.4864864864864865, 0.5033783783783784, 0.5, 0.47297297297297297, 0.47297297297297297, 0.46283783783783783, 0.43243243243243246, 0.5743243243243243, 0.40878378378378377, 0.9290540540540541, 0.6047297297297297, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.060810810810810814, 0.07432432432432433, 0.07432432432432433, 0.2533783783783784, 0.9459459459459459], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3390.gap.json b/pfam_gap_rates/DUF3390.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..099b90d9b0b63e06b0ac0181d856e882bd168122
--- /dev/null
+++ b/pfam_gap_rates/DUF3390.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3390", "n_seqs": 422, "length": 109, "gap_rates": [0.8530805687203792, 0.8246445497630331, 0.8222748815165877, 0.8222748815165877, 0.8175355450236966, 0.8649289099526066, 0.8672985781990521, 0.9478672985781991, 0.9052132701421801, 0.8483412322274881, 0.8293838862559242, 0.7867298578199052, 0.7061611374407583, 0.6872037914691943, 0.6682464454976303, 0.6398104265402843, 0.6042654028436019, 0.5781990521327014, 0.566350710900474, 0.5521327014218009, 0.9478672985781991, 0.4976303317535545, 0.44075829383886256, 0.35308056872037913, 0.2843601895734597, 0.22511848341232227, 0.16350710900473933, 0.13744075829383887, 0.11137440758293839, 0.09004739336492891, 0.054502369668246446, 0.030805687203791468, 0.023696682464454975, 0.018957345971563982, 0.016587677725118485, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002369668246445498, 0.0, 0.002369668246445498, 0.002369668246445498, 0.3293838862559242, 0.3412322274881517, 0.36255924170616116, 0.43364928909952605, 0.5734597156398105, 0.9289099526066351, 0.9478672985781991, 0.7298578199052133, 0.45734597156398105, 0.4075829383886256, 0.35071090047393366, 0.3293838862559242, 0.3293838862559242, 0.011848341232227487, 0.016587677725118485, 0.04976303317535545, 0.011848341232227487, 0.009478672985781991, 0.24644549763033174, 0.43601895734597157, 0.7156398104265402, 0.8033175355450237, 0.8696682464454977, 0.7322274881516587, 0.7037914691943128, 0.009478672985781991, 0.0071090047393364926, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002369668246445498, 0.002369668246445498, 0.002369668246445498, 0.002369668246445498, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.0071090047393364926, 0.009478672985781991, 0.011848341232227487, 0.016587677725118485, 0.018957345971563982, 0.037914691943127965, 0.08767772511848342, 0.22037914691943128, 0.5213270142180095, 0.8720379146919431], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3397.gap.json b/pfam_gap_rates/DUF3397.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2eb69a5c28c947bae1073d8559732e221c63422b
--- /dev/null
+++ b/pfam_gap_rates/DUF3397.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3398.gap.json b/pfam_gap_rates/DUF3398.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..400308aa5ee50286311434374255babd4fed1a24
--- /dev/null
+++ b/pfam_gap_rates/DUF3398.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3398", "n_seqs": 182, "length": 103, "gap_rates": [0.8021978021978022, 0.5274725274725275, 0.34615384615384615, 0.21978021978021978, 0.17032967032967034, 0.15384615384615385, 0.14835164835164835, 0.14285714285714285, 0.14285714285714285, 0.13186813186813187, 0.11538461538461539, 0.0989010989010989, 0.06043956043956044, 0.054945054945054944, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.038461538461538464, 0.03296703296703297, 0.03296703296703297, 0.027472527472527472, 0.027472527472527472, 0.02197802197802198, 0.02197802197802198, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.054945054945054944, 0.9285714285714286, 0.016483516483516484, 0.027472527472527472, 0.2967032967032967, 0.1813186813186813, 0.038461538461538464, 0.027472527472527472, 0.038461538461538464, 0.04395604395604396, 0.04395604395604396, 0.510989010989011, 0.04945054945054945, 0.04945054945054945, 0.038461538461538464, 0.038461538461538464, 0.04395604395604396, 0.038461538461538464, 0.04395604395604396, 0.04395604395604396, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.04945054945054945, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.06593406593406594, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.945054945054945, 0.9395604395604396, 0.2857142857142857, 0.26373626373626374, 0.23076923076923078, 0.14835164835164835, 0.14835164835164835, 0.15384615384615385, 0.15934065934065933, 0.24175824175824176, 0.6098901098901099, 0.5879120879120879, 0.9010989010989011, 0.2087912087912088, 0.2032967032967033, 0.2032967032967033, 0.21978021978021978, 0.21428571428571427, 0.8681318681318682, 0.8736263736263736, 0.8626373626373627, 0.2032967032967033, 0.2032967032967033, 0.2087912087912088, 0.2032967032967033, 0.2032967032967033, 0.2032967032967033, 0.2032967032967033, 0.21428571428571427], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3408.gap.json b/pfam_gap_rates/DUF3408.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0fdec16396573d57eeb723f2b4d9aa4b3e14e5bb
--- /dev/null
+++ b/pfam_gap_rates/DUF3408.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3408", "n_seqs": 155, "length": 162, "gap_rates": [0.8451612903225807, 0.6193548387096774, 0.6, 0.5806451612903226, 0.5806451612903226, 0.5741935483870968, 0.5741935483870968, 0.5741935483870968, 0.567741935483871, 0.567741935483871, 0.5548387096774193, 0.9290322580645162, 0.9290322580645162, 0.9225806451612903, 0.6129032258064516, 0.5870967741935483, 0.5935483870967742, 0.6064516129032258, 0.6516129032258065, 0.6451612903225806, 0.6387096774193548, 0.6451612903225806, 0.5032258064516129, 0.7935483870967742, 0.8516129032258064, 0.896774193548387, 0.9225806451612903, 0.9290322580645162, 0.9419354838709677, 0.9419354838709677, 0.9225806451612903, 0.896774193548387, 0.8709677419354839, 0.8129032258064516, 0.7677419354838709, 0.5419354838709678, 0.5096774193548387, 0.43870967741935485, 0.4129032258064516, 0.3935483870967742, 0.38064516129032255, 0.36129032258064514, 0.3096774193548387, 0.3032258064516129, 0.2903225806451613, 0.2838709677419355, 0.27741935483870966, 0.2838709677419355, 0.2838709677419355, 0.3225806451612903, 0.3096774193548387, 0.3161290322580645, 0.2903225806451613, 0.3032258064516129, 0.3419354838709677, 0.2967741935483871, 0.27741935483870966, 0.2838709677419355, 0.2838709677419355, 0.2838709677419355, 0.27741935483870966, 0.2838709677419355, 0.27741935483870966, 0.2645161290322581, 0.2709677419354839, 0.2645161290322581, 0.25161290322580643, 0.27741935483870966, 0.2838709677419355, 0.2645161290322581, 0.3161290322580645, 0.23870967741935484, 0.1935483870967742, 0.16774193548387098, 0.16129032258064516, 0.14193548387096774, 0.13548387096774195, 0.11612903225806452, 0.8709677419354839, 0.8838709677419355, 0.9096774193548387, 0.9290322580645162, 0.9354838709677419, 0.9225806451612903, 0.9096774193548387, 0.8838709677419355, 0.864516129032258, 0.05161290322580645, 0.04516129032258064, 0.03870967741935484, 0.03225806451612903, 0.03225806451612903, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.025806451612903226, 0.7161290322580646, 0.6580645161290323, 0.025806451612903226, 0.025806451612903226, 0.01935483870967742, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.14838709677419354, 0.012903225806451613, 0.01935483870967742, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.025806451612903226, 0.025806451612903226, 0.08387096774193549, 0.2709677419354839, 0.2903225806451613, 0.33548387096774196, 0.3935483870967742, 0.7290322580645161], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3418.gap.json b/pfam_gap_rates/DUF3418.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a715830ede5af150431887d63a7316d2203f2346
--- /dev/null
+++ b/pfam_gap_rates/DUF3418.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3422.gap.json b/pfam_gap_rates/DUF3422.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c9d7ebf9496d8178d63c0102044415c67e00ac3
--- /dev/null
+++ b/pfam_gap_rates/DUF3422.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF3430.gap.json b/pfam_gap_rates/DUF3430.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a5d120b2de913ea5512d64604137a641a1c95c6
--- /dev/null
+++ b/pfam_gap_rates/DUF3430.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF3455.gap.json b/pfam_gap_rates/DUF3455.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6017780f7a41f58938ce030352590b3451019c5f
--- /dev/null
+++ b/pfam_gap_rates/DUF3455.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3474.gap.json b/pfam_gap_rates/DUF3474.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8b6b8203e90719f244c49a057260ab14de5cc4b
--- /dev/null
+++ b/pfam_gap_rates/DUF3474.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3508.gap.json b/pfam_gap_rates/DUF3508.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec7fa10bec3b4583a60b4c19cf8e8dcaeb0e1e9d
--- /dev/null
+++ b/pfam_gap_rates/DUF3508.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3510.gap.json b/pfam_gap_rates/DUF3510.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c5e70b1fe88dfac40da62d3987c95aeaf7d2f2e
--- /dev/null
+++ b/pfam_gap_rates/DUF3510.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3524.gap.json b/pfam_gap_rates/DUF3524.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecac437c59a86fc0f327d44f1af8f5f2023afea9
--- /dev/null
+++ b/pfam_gap_rates/DUF3524.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3527.gap.json b/pfam_gap_rates/DUF3527.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1427bc5a8ebdbfd6b0a03c6c3fdeb1bc96cffea8
--- /dev/null
+++ b/pfam_gap_rates/DUF3527.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3570.gap.json b/pfam_gap_rates/DUF3570.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b009af6d156db65225d587ae10e7d1fcfd15deee
--- /dev/null
+++ b/pfam_gap_rates/DUF3570.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3576.gap.json b/pfam_gap_rates/DUF3576.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80a0f6aff9dd0610c880ba8eba9653ff9ff0d152
--- /dev/null
+++ b/pfam_gap_rates/DUF3576.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3576", "n_seqs": 132, "length": 102, "gap_rates": [0.3333333333333333, 0.06818181818181818, 0.022727272727272728, 0.015151515151515152, 0.015151515151515152, 0.007575757575757576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.022727272727272728, 0.007575757575757576, 0.007575757575757576, 0.015151515151515152, 0.29545454545454547, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007575757575757576, 0.0, 0.0, 0.007575757575757576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7575757575757576, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.30303030303030304, 0.20454545454545456, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.015151515151515152, 0.045454545454545456, 0.8939393939393939], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3585.gap.json b/pfam_gap_rates/DUF3585.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02cd7e39e790105d5a1def4b677e12337d5d78cd
--- /dev/null
+++ b/pfam_gap_rates/DUF3585.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3593.gap.json b/pfam_gap_rates/DUF3593.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..502ee0f99d2cf950a513d742827025dcf2c719a1
--- /dev/null
+++ b/pfam_gap_rates/DUF3593.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3593", "n_seqs": 126, "length": 92, "gap_rates": [0.2777777777777778, 0.12698412698412698, 0.06349206349206349, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.9126984126984127, 0.9206349206349206, 0.9126984126984127, 0.9047619047619048, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.753968253968254, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.07936507936507936, 0.07142857142857142, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.9285714285714286, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.07142857142857142, 0.07142857142857142, 0.07936507936507936, 0.07936507936507936, 0.11904761904761904, 0.15079365079365079, 0.2222222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3616.gap.json b/pfam_gap_rates/DUF3616.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d1eeb654191f16cd9903fe92b633e35a7467721
--- /dev/null
+++ b/pfam_gap_rates/DUF3616.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3638.gap.json b/pfam_gap_rates/DUF3638.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81ac52cbf2b9939d879ab52681af446cf7d98b9e
--- /dev/null
+++ b/pfam_gap_rates/DUF3638.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3683.gap.json b/pfam_gap_rates/DUF3683.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd419e24578db702c2fcf00788cbdce5a746b076
--- /dev/null
+++ b/pfam_gap_rates/DUF3683.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3683", "n_seqs": 128, "length": 127, "gap_rates": [0.90625, 0.078125, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4296875, 0.4453125, 0.515625, 0.703125, 0.765625, 0.796875, 0.9296875, 0.8203125, 0.78125, 0.75, 0.6796875, 0.453125, 0.4375, 0.421875, 0.03125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015625, 0.015625, 0.015625, 0.09375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3744.gap.json b/pfam_gap_rates/DUF3744.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3e31345a5a017aced28050d8f47c839ba2eb1b6
--- /dev/null
+++ b/pfam_gap_rates/DUF3744.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3788.gap.json b/pfam_gap_rates/DUF3788.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34c19414a64e33cc8b1ee65fc885e6e44686ef18
--- /dev/null
+++ b/pfam_gap_rates/DUF3788.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3788", "n_seqs": 125, "length": 135, "gap_rates": [0.904, 0.368, 0.208, 0.136, 0.128, 0.128, 0.12, 0.12, 0.104, 0.104, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.624, 0.336, 0.328, 0.08, 0.08, 0.08, 0.08, 0.08, 0.072, 0.072, 0.072, 0.072, 0.072, 0.088, 0.08, 0.144, 0.416, 0.528, 0.072, 0.072, 0.064, 0.064, 0.064, 0.064, 0.064, 0.064, 0.224, 0.072, 0.072, 0.064, 0.064, 0.064, 0.064, 0.048, 0.04, 0.04, 0.04, 0.04, 0.04, 0.08, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.016, 0.016, 0.016, 0.016, 0.008, 0.016, 0.008, 0.36, 0.36, 0.352, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.76, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.016, 0.016, 0.008, 0.008, 0.008, 0.008, 0.92, 0.032, 0.032, 0.024, 0.024, 0.024, 0.024, 0.016, 0.016, 0.016, 0.016, 0.016, 0.024, 0.928, 0.016, 0.024, 0.024, 0.032, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.032, 0.328], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3846.gap.json b/pfam_gap_rates/DUF3846.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b147ccd0d42519fb06e3fd59db5237d8ec33205e
--- /dev/null
+++ b/pfam_gap_rates/DUF3846.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4010.gap.json b/pfam_gap_rates/DUF4010.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..147a129d9e662fe70beead3d0b757e5e358ff463
--- /dev/null
+++ b/pfam_gap_rates/DUF4010.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4037.gap.json b/pfam_gap_rates/DUF4037.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2547c3d7333a7ec9c20a580d4370b1cbd53718a
--- /dev/null
+++ b/pfam_gap_rates/DUF4037.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4037", "n_seqs": 183, "length": 106, "gap_rates": [0.3989071038251366, 0.3879781420765027, 0.3770491803278688, 0.37158469945355194, 0.36065573770491804, 0.33879781420765026, 0.3224043715846995, 0.3005464480874317, 0.26229508196721313, 0.24043715846994534, 0.2185792349726776, 0.14754098360655737, 0.06557377049180328, 0.04918032786885246, 0.03825136612021858, 0.03278688524590164, 0.03278688524590164, 0.01639344262295082, 0.00546448087431694, 0.00546448087431694, 0.00546448087431694, 0.02185792349726776, 0.04371584699453552, 0.03278688524590164, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5245901639344263, 0.00546448087431694, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00546448087431694, 0.00546448087431694, 0.0, 0.0, 0.00546448087431694, 0.060109289617486336, 0.04918032786885246, 0.8142076502732241, 0.8142076502732241, 0.8142076502732241, 0.34972677595628415, 0.01639344262295082, 0.00546448087431694, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00546448087431694, 0.00546448087431694, 0.00546448087431694, 0.01092896174863388, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.9398907103825137, 0.9398907103825137, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.07103825136612021, 0.08743169398907104, 0.10382513661202186, 0.11475409836065574, 0.3114754098360656, 0.546448087431694], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4079.gap.json b/pfam_gap_rates/DUF4079.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25d8a20dcfb0f26facb11ecaab13935046c1e256
--- /dev/null
+++ b/pfam_gap_rates/DUF4079.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4080.gap.json b/pfam_gap_rates/DUF4080.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4b76cde35f529788ebe73691c134b9d6928d03b
--- /dev/null
+++ b/pfam_gap_rates/DUF4080.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4093.gap.json b/pfam_gap_rates/DUF4093.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95b3e7562eb604bf252887461d45435f30d4c5e6
--- /dev/null
+++ b/pfam_gap_rates/DUF4093.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4093", "n_seqs": 416, "length": 92, "gap_rates": [0.19230769230769232, 0.016826923076923076, 0.01201923076923077, 0.01201923076923077, 0.01201923076923077, 0.01201923076923077, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.27403846153846156, 0.8149038461538461, 0.9110576923076923, 0.875, 0.7379807692307693, 0.13221153846153846, 0.009615384615384616, 0.040865384615384616, 0.8653846153846154, 0.6418269230769231, 0.028846153846153848, 0.026442307692307692, 0.026442307692307692, 0.028846153846153848, 0.028846153846153848, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.004807692307692308, 0.004807692307692308, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.004807692307692308, 0.004807692307692308, 0.07692307692307693, 0.055288461538461536, 0.052884615384615384, 0.028846153846153848, 0.002403846153846154, 0.002403846153846154, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002403846153846154, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.8485576923076923, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.14903846153846154, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.007211538461538462, 0.021634615384615384, 0.06009615384615385, 0.16105769230769232, 0.36538461538461536], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4100.gap.json b/pfam_gap_rates/DUF4100.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5a152a68a8fa6118ff6e7a9a35d2dc70e085d8d
--- /dev/null
+++ b/pfam_gap_rates/DUF4100.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4100", "n_seqs": 2739, "length": 208, "gap_rates": [0.5301204819277109, 0.5082146768893757, 0.5045637093829864, 0.4965315808689303, 0.49069003285870755, 0.46257758305951074, 0.45819642205184374, 0.452354874041621, 0.4497991967871486, 0.4461482292807594, 0.4410368747718145, 0.4370208105147864, 0.4399415845198978, 0.43775100401606426, 0.4362906170135086, 0.9470609711573567, 0.9452354874041621, 0.42570281124497994, 0.41767068273092367, 0.41109894121942314, 0.40927345746622856, 0.40744797371303393, 0.4048922964585615, 0.402701715954728, 0.39868565169769987, 0.3968601679445053, 0.3953997809419496, 0.39174881343556045, 0.3899233296823658, 0.3888280394304491, 0.38627236217597666, 0.3837166849215042, 0.38116100766703176, 0.37897042716319823, 0.38116100766703176, 0.380065717415115, 0.40744797371303393, 0.4078130704636729, 0.4315443592552026, 0.4366557137641475, 0.3873676524278934, 0.3855421686746988, 0.38298649142022634, 0.3939393939393939, 0.39576487769258856, 0.39612997444322745, 0.3994158451989777, 0.3990507484483388, 0.3972252646951442, 0.39247900693683824, 0.389193136181088, 0.38663745892661555, 0.3873676524278934, 0.38517707192405987, 0.3833515881708653, 0.37860533041255934, 0.3742241694048923, 0.3723986856516977, 0.3723986856516977, 0.37312887915297555, 0.3705732018985031, 0.3727637824023366, 0.3742241694048923, 0.3753194596568091, 0.37714494341000365, 0.37677984665936476, 0.3793355239138372, 0.37751004016064255, 0.37203358890105875, 0.37312887915297555, 0.3702081051478642, 0.36911281489594744, 0.36765242789339175, 0.36509675063891933, 0.35998539612997443, 0.35815991237677985, 0.35560423512230743, 0.35268346111719606, 0.35049288061336253, 0.33917488134355606, 0.3322380430814166, 0.33260313983205547, 0.3344286235852501, 0.3344286235852501, 0.33515881708652795, 0.33953997809419495, 0.35268346111719606, 0.3588901058780577, 0.35962029937933554, 0.357429718875502, 0.35706462212486306, 0.3548740416210296, 0.357429718875502, 0.3588901058780577, 0.3577948156261409, 0.3577948156261409, 0.35706462212486306, 0.35450894487039064, 0.3534136546184739, 0.3508579773640015, 0.34611171960569553, 0.3457466228550566, 0.343921139101862, 0.3417305585980285, 0.3442862358525009, 0.3362541073384447, 0.34209565534866737, 0.3424607520993063, 0.34209565534866737, 0.3479372033588901, 0.34757210660825116, 0.34720700985761227, 0.3457466228550566, 0.3402701715954728, 0.3402701715954728, 0.33953997809419495, 0.3493975903614458, 0.3493975903614458, 0.35012778386272364, 0.41913106973347936, 0.4235122307411464, 0.389193136181088, 0.3877327491785323, 0.38809784592917124, 0.38846294267981013, 0.3888280394304491, 0.37312887915297555, 0.3727637824023366, 0.3727637824023366, 0.3727637824023366, 0.3742241694048923, 0.37458926615553123, 0.3738590726542534, 0.37312887915297555, 0.3238408178167214, 0.32457101131799926, 0.321285140562249, 0.30558598028477546, 0.3041255932822198, 0.30193501277838625, 0.3026652062796641, 0.3044906900328587, 0.3479372033588901, 0.35012778386272364, 0.3614457831325301, 0.3468419131069733, 0.34866739686016796, 0.34720700985761227, 0.3479372033588901, 0.34611171960569553, 0.3457466228550566, 0.3479372033588901, 0.34866739686016796, 0.34720700985761227, 0.34866739686016796, 0.44176706827309237, 0.43263964950711936, 0.4085432639649507, 0.4008762322015334, 0.40817816721431177, 0.4213216502373129, 0.42606790799561883, 0.4264330047462578, 0.42059145673603504, 0.43227455275648047, 0.4238773274917853, 0.41474990872581236, 0.41511500547645125, 0.4140197152245345, 0.3913837166849215, 0.39028842643300476, 0.3855421686746988, 0.3859072654253377, 0.40817816721431177, 0.38298649142022634, 0.3632712668857247, 0.36400146038700254, 0.3738590726542534, 0.37312887915297555, 0.36509675063891933, 0.38262139466958744, 0.3727637824023366, 0.3647316538882804, 0.3610806863818912, 0.3610806863818912, 0.3603504928806134, 0.3577948156261409, 0.37312887915297555, 0.37751004016064255, 0.3793355239138372, 0.37897042716319823, 0.39612997444322745, 0.40306681270536693, 0.4045271997079226, 0.4063526834611172, 0.4089083607155896, 0.41511500547645125, 0.41621029572836804, 0.41621029572836804, 0.41767068273092367, 0.41876597298284046, 0.4198612632347572, 0.420956553486674, 0.42059145673603504, 0.4213216502373129, 0.42278203723986857, 0.47973713033953996, 0.5301204819277109], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4108.gap.json b/pfam_gap_rates/DUF4108.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00d2dcda9755596f4b844ca3b8bd8a59c486c11e
--- /dev/null
+++ b/pfam_gap_rates/DUF4108.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4108", "n_seqs": 687, "length": 145, "gap_rates": [0.3129548762736536, 0.2678311499272198, 0.2678311499272198, 0.2663755458515284, 0.2663755458515284, 0.2663755458515284, 0.2663755458515284, 0.264919941775837, 0.26200873362445415, 0.07860262008733625, 0.07714701601164484, 0.07569141193595343, 0.07423580786026202, 0.07278020378457059, 0.07132459970887918, 0.06986899563318777, 0.06841339155749636, 0.06404657933042213, 0.06404657933042213, 0.06404657933042213, 0.06404657933042213, 0.06404657933042213, 0.06404657933042213, 0.06259097525473072, 0.0611353711790393, 0.0611353711790393, 0.0611353711790393, 0.05967976710334789, 0.05822416302765648, 0.055312954876273655, 0.050946142649199416, 0.049490538573508006, 0.040756914119359534, 0.040756914119359534, 0.040756914119359534, 0.040756914119359534, 0.039301310043668124, 0.9490538573508006, 0.027656477438136828, 0.023289665211062592, 0.01455604075691412, 0.01455604075691412, 0.010189228529839884, 0.005822416302765648, 0.005822416302765648, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.002911208151382824, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.9490538573508006, 0.9490538573508006, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.9490538573508006, 0.9490538573508006, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.05240174672489083, 0.05240174672489083, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.001455604075691412, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001455604075691412, 0.001455604075691412, 0.002911208151382824, 0.002911208151382824, 0.002911208151382824, 0.002911208151382824, 0.002911208151382824, 0.002911208151382824, 0.005822416302765648, 0.005822416302765648, 0.005822416302765648, 0.008733624454148471, 0.011644832605531296, 0.011644832605531296, 0.011644832605531296, 0.013100436681222707, 0.03784570596797671, 0.9475982532751092, 0.03784570596797671, 0.039301310043668124, 0.039301310043668124, 0.040756914119359534, 0.040756914119359534, 0.042212518195050945, 0.9475982532751092, 0.9475982532751092, 0.9475982532751092, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.046579330422125184, 0.048034934497816595, 0.048034934497816595, 0.048034934497816595, 0.048034934497816595, 0.048034934497816595, 0.049490538573508006, 0.049490538573508006, 0.053857350800582245, 0.055312954876273655, 0.056768558951965066, 0.056768558951965066, 0.05822416302765648, 0.05967976710334789, 0.06986899563318777], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4131.gap.json b/pfam_gap_rates/DUF4131.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa2a92793285cf54397b0418001b71e9195fa4fb
--- /dev/null
+++ b/pfam_gap_rates/DUF4131.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4131", "n_seqs": 1272, "length": 210, "gap_rates": [0.7955974842767296, 0.5125786163522013, 0.43160377358490565, 0.41509433962264153, 0.3977987421383648, 0.38443396226415094, 0.3789308176100629, 0.904874213836478, 0.779874213836478, 0.4363207547169811, 0.389937106918239, 0.3238993710691824, 0.3011006289308176, 0.27437106918238996, 0.2562893081761006, 0.23977987421383648, 0.23034591194968554, 0.21462264150943397, 0.20833333333333334, 0.1949685534591195, 0.1792452830188679, 0.16745283018867924, 0.15723270440251572, 0.15330188679245282, 0.14779874213836477, 0.14622641509433962, 0.1430817610062893, 0.14465408805031446, 0.14622641509433962, 0.14544025157232704, 0.14544025157232704, 0.15251572327044025, 0.1580188679245283, 0.20440251572327045, 0.4088050314465409, 0.5754716981132075, 0.6084905660377359, 0.7861635220125787, 0.8608490566037735, 0.9119496855345912, 0.934748427672956, 0.949685534591195, 0.9426100628930818, 0.9237421383647799, 0.8938679245283019, 0.8231132075471698, 0.7452830188679245, 0.2783018867924528, 0.23663522012578617, 0.20754716981132076, 0.16981132075471697, 0.1611635220125786, 0.13836477987421383, 0.11163522012578617, 0.10220125786163523, 0.09276729559748427, 0.08726415094339622, 0.08333333333333333, 0.08254716981132075, 0.08018867924528301, 0.07547169811320754, 0.07625786163522012, 0.07311320754716981, 0.07468553459119497, 0.07311320754716981, 0.07547169811320754, 0.07468553459119497, 0.07311320754716981, 0.07547169811320754, 0.07311320754716981, 0.07154088050314465, 0.07468553459119497, 0.07154088050314465, 0.07232704402515723, 0.07311320754716981, 0.07625786163522012, 0.0770440251572327, 0.14937106918238993, 0.139937106918239, 0.1139937106918239, 0.1069182389937107, 0.11242138364779874, 0.10141509433962265, 0.11242138364779874, 0.2578616352201258, 0.6312893081761006, 0.8309748427672956, 0.9237421383647799, 0.9465408805031447, 0.8907232704402516, 0.7696540880503144, 0.19025157232704404, 0.17845911949685533, 0.1509433962264151, 0.12578616352201258, 0.11556603773584906, 0.08569182389937106, 0.07389937106918239, 0.06761006289308176, 0.059748427672955975, 0.0589622641509434, 0.08726415094339622, 0.06132075471698113, 0.06367924528301887, 0.06289308176100629, 0.060534591194968554, 0.0589622641509434, 0.055031446540880505, 0.07311320754716981, 0.05738993710691824, 0.06682389937106918, 0.06289308176100629, 0.9394654088050315, 0.8435534591194969, 0.10377358490566038, 0.06682389937106918, 0.06132075471698113, 0.07311320754716981, 0.07861635220125786, 0.2775157232704403, 0.34355345911949686, 0.3938679245283019, 0.4339622641509434, 0.8286163522012578, 0.9056603773584906, 0.9292452830188679, 0.9371069182389937, 0.9182389937106918, 0.8718553459119497, 0.7460691823899371, 0.28537735849056606, 0.24449685534591195, 0.18867924528301888, 0.15566037735849056, 0.12421383647798742, 0.09119496855345911, 0.07940251572327044, 0.05738993710691824, 0.05188679245283019, 0.04323899371069182, 0.03930817610062893, 0.03537735849056604, 0.03223270440251572, 0.031446540880503145, 0.030660377358490566, 0.029874213836477988, 0.030660377358490566, 0.03459119496855346, 0.03459119496855346, 0.03773584905660377, 0.049528301886792456, 0.04481132075471698, 0.0440251572327044, 0.7759433962264151, 0.8482704402515723, 0.8836477987421384, 0.9378930817610063, 0.9488993710691824, 0.9135220125786163, 0.8710691823899371, 0.8238993710691824, 0.6729559748427673, 0.4889937106918239, 0.2806603773584906, 0.05188679245283019, 0.02908805031446541, 0.02279874213836478, 0.02122641509433962, 0.020440251572327043, 0.018867924528301886, 0.01729559748427673, 0.01729559748427673, 0.01650943396226415, 0.014937106918238994, 0.015723270440251572, 0.018081761006289308, 0.018081761006289308, 0.0220125786163522, 0.02908805031446541, 0.03459119496855346, 0.04323899371069182, 0.054245283018867926, 0.16588050314465408, 0.15880503144654087, 0.13522012578616352, 0.06839622641509434, 0.06839622641509434, 0.07075471698113207, 0.06761006289308176, 0.06682389937106918, 0.0699685534591195, 0.0770440251572327, 0.09119496855345911, 0.0959119496855346, 0.09905660377358491, 0.10141509433962265, 0.10220125786163523, 0.10455974842767296, 0.10534591194968554, 0.10849056603773585, 0.125, 0.1391509433962264, 0.1509433962264151, 0.19654088050314467, 0.2460691823899371, 0.3058176100628931, 0.3977987421383648, 0.5369496855345912, 0.714622641509434, 0.889937106918239], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4149.gap.json b/pfam_gap_rates/DUF4149.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f03374cf55040145e58b7cb0c3af248f9e139bd
--- /dev/null
+++ b/pfam_gap_rates/DUF4149.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4149", "n_seqs": 475, "length": 118, "gap_rates": [0.48210526315789476, 0.15789473684210525, 0.08421052631578947, 0.06736842105263158, 0.06315789473684211, 0.056842105263157895, 0.056842105263157895, 0.05473684210526316, 0.05473684210526316, 0.05052631578947368, 0.04842105263157895, 0.04, 0.04, 0.04421052631578947, 0.042105263157894736, 0.029473684210526315, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.018947368421052633, 0.010526315789473684, 0.008421052631578947, 0.008421052631578947, 0.008421052631578947, 0.8821052631578947, 0.9473684210526315, 0.9326315789473684, 0.88, 0.008421052631578947, 0.9473684210526315, 0.8526315789473684, 0.008421052631578947, 0.00631578947368421, 0.00631578947368421, 0.018947368421052633, 0.004210526315789474, 0.004210526315789474, 0.004210526315789474, 0.00631578947368421, 0.008421052631578947, 0.00631578947368421, 0.00631578947368421, 0.008421052631578947, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.004210526315789474, 0.004210526315789474, 0.004210526315789474, 0.002105263157894737, 0.002105263157894737, 0.002105263157894737, 0.004210526315789474, 0.004210526315789474, 0.004210526315789474, 0.004210526315789474, 0.004210526315789474, 0.004210526315789474, 0.004210526315789474, 0.004210526315789474, 0.037894736842105266, 0.07157894736842105, 0.0863157894736842, 0.6463157894736842, 0.7621052631578947, 0.8147368421052632, 0.8926315789473684, 0.9452631578947368, 0.9305263157894736, 0.8694736842105263, 0.7873684210526316, 0.7263157894736842, 0.47789473684210526, 0.4147368421052632, 0.3431578947368421, 0.15789473684210525, 0.1431578947368421, 0.12210526315789473, 0.10105263157894737, 0.09263157894736843, 0.042105263157894736, 0.8568421052631578, 0.014736842105263158, 0.021052631578947368, 0.018947368421052633, 0.018947368421052633, 0.018947368421052633, 0.018947368421052633, 0.018947368421052633, 0.018947368421052633, 0.018947368421052633, 0.021052631578947368, 0.023157894736842106, 0.023157894736842106, 0.023157894736842106, 0.02526315789473684, 0.02526315789473684, 0.02526315789473684, 0.031578947368421054, 0.037894736842105266, 0.037894736842105266, 0.037894736842105266, 0.04, 0.042105263157894736, 0.04421052631578947, 0.05052631578947368, 0.05894736842105263, 0.06526315789473684, 0.07578947368421053, 0.09473684210526316, 0.15789473684210525, 0.22105263157894736, 0.2863157894736842, 0.3957894736842105, 0.5494736842105263], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4153.gap.json b/pfam_gap_rates/DUF4153.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ff36999982f532921edce884489181ccb982c13
--- /dev/null
+++ b/pfam_gap_rates/DUF4153.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4154.gap.json b/pfam_gap_rates/DUF4154.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e68bac853dfaf4aefa1b723436fff5632eb324d3
--- /dev/null
+++ b/pfam_gap_rates/DUF4154.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4154", "n_seqs": 274, "length": 153, "gap_rates": [0.7700729927007299, 0.35036496350364965, 0.17883211678832117, 0.12773722627737227, 0.10218978102189781, 0.08394160583941605, 0.06204379562043796, 0.058394160583941604, 0.05474452554744526, 0.051094890510948905, 0.051094890510948905, 0.04744525547445255, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.0364963503649635, 0.06569343065693431, 0.23357664233576642, 0.33211678832116787, 0.6131386861313869, 0.7116788321167883, 0.5109489051094891, 0.043795620437956206, 0.0364963503649635, 0.0364963503649635, 0.032846715328467155, 0.0364963503649635, 0.0364963503649635, 0.032846715328467155, 0.032846715328467155, 0.9233576642335767, 0.07664233576642336, 0.040145985401459854, 0.040145985401459854, 0.0364963503649635, 0.0364963503649635, 0.040145985401459854, 0.0364963503649635, 0.043795620437956206, 0.040145985401459854, 0.4343065693430657, 0.072992700729927, 0.051094890510948905, 0.07664233576642336, 0.05474452554744526, 0.06569343065693431, 0.05474452554744526, 0.06934306569343066, 0.05474452554744526, 0.029197080291970802, 0.025547445255474453, 0.029197080291970802, 0.021897810218978103, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.01824817518248175, 0.01824817518248175, 0.032846715328467155, 0.0364963503649635, 0.8394160583941606, 0.7262773722627737, 0.07664233576642336, 0.021897810218978103, 0.948905109489051, 0.948905109489051, 0.014598540145985401, 0.014598540145985401, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.9233576642335767, 0.15328467153284672, 0.10948905109489052, 0.058394160583941604, 0.06204379562043796, 0.032846715328467155, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.032846715328467155, 0.032846715328467155, 0.032846715328467155, 0.0364963503649635, 0.040145985401459854, 0.04744525547445255, 0.05474452554744526, 0.06934306569343066, 0.014598540145985401, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.10218978102189781, 0.0364963503649635, 0.021897810218978103, 0.01824817518248175, 0.025547445255474453, 0.01824817518248175, 0.021897810218978103, 0.014598540145985401, 0.021897810218978103, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.032846715328467155, 0.927007299270073, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.021897810218978103, 0.021897810218978103, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.021897810218978103, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.029197080291970802, 0.043795620437956206, 0.051094890510948905, 0.058394160583941604, 0.072992700729927, 0.08759124087591241, 0.10948905109489052, 0.17153284671532848, 0.583941605839416], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4169.gap.json b/pfam_gap_rates/DUF4169.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f13265bbec74ed5d8f7e106d56d35c437ac0c689
--- /dev/null
+++ b/pfam_gap_rates/DUF4169.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4169", "n_seqs": 137, "length": 55, "gap_rates": [0.25547445255474455, 0.13138686131386862, 0.014598540145985401, 0.014598540145985401, 0.0072992700729927005, 0.0072992700729927005, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.021897810218978103, 0.021897810218978103, 0.029197080291970802, 0.043795620437956206, 0.16058394160583941], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4173.gap.json b/pfam_gap_rates/DUF4173.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54dd6243f66713897beec78c914d91c8824cced9
--- /dev/null
+++ b/pfam_gap_rates/DUF4173.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4192.gap.json b/pfam_gap_rates/DUF4192.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cce3bfe8ff0cb6f85713c61cc8e5f6f608ef27d
--- /dev/null
+++ b/pfam_gap_rates/DUF4192.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4192", "n_seqs": 227, "length": 456, "gap_rates": [0.4933920704845815, 0.34801762114537443, 0.18061674008810572, 0.1762114537444934, 0.15859030837004406, 0.15859030837004406, 0.15859030837004406, 0.15859030837004406, 0.15418502202643172, 0.14977973568281938, 0.14977973568281938, 0.14977973568281938, 0.14977973568281938, 0.14537444933920704, 0.14537444933920704, 0.14096916299559473, 0.14096916299559473, 0.14537444933920704, 0.14096916299559473, 0.13656387665198239, 0.13656387665198239, 0.13656387665198239, 0.13215859030837004, 0.13215859030837004, 0.13215859030837004, 0.13215859030837004, 0.13215859030837004, 0.14096916299559473, 0.5594713656387665, 0.5594713656387665, 0.8237885462555066, 0.8942731277533039, 0.9383259911894273, 0.9251101321585903, 0.8678414096916299, 0.7841409691629956, 0.16740088105726872, 0.15859030837004406, 0.14096916299559473, 0.12334801762114538, 0.12334801762114538, 0.12334801762114538, 0.12334801762114538, 0.12334801762114538, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4193.gap.json b/pfam_gap_rates/DUF4193.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60ba78c22ec5a822cb535f17715018addc102d08
--- /dev/null
+++ b/pfam_gap_rates/DUF4193.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4193", "n_seqs": 256, "length": 102, "gap_rates": [0.05078125, 0.0390625, 0.03515625, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03515625, 0.0859375, 0.75390625, 0.07421875, 0.9453125, 0.05859375, 0.09765625, 0.0859375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.02734375, 0.13671875, 0.90625, 0.125, 0.078125, 0.01171875, 0.01171875, 0.015625, 0.03515625, 0.015625, 0.015625, 0.01171875, 0.0078125, 0.03125, 0.01171875, 0.0078125, 0.00390625, 0.0078125, 0.0078125, 0.0078125, 0.00390625, 0.00390625, 0.00390625, 0.015625, 0.0078125, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.0, 0.0, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.00390625, 0.0078125, 0.0078125, 0.00390625, 0.86328125, 0.08203125, 0.08203125, 0.01171875, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.109375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4200.gap.json b/pfam_gap_rates/DUF4200.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6be82665a0886ad63926d638af0a6ed6f6aeb9d4
--- /dev/null
+++ b/pfam_gap_rates/DUF4200.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4200", "n_seqs": 342, "length": 119, "gap_rates": [0.3128654970760234, 0.22514619883040934, 0.18421052631578946, 0.16374269005847952, 0.11988304093567251, 0.10818713450292397, 0.10818713450292397, 0.09064327485380116, 0.0847953216374269, 0.08187134502923976, 0.08187134502923976, 0.07017543859649122, 0.07017543859649122, 0.06725146198830409, 0.06432748538011696, 0.06140350877192982, 0.06140350877192982, 0.05263157894736842, 0.049707602339181284, 0.043859649122807015, 0.038011695906432746, 0.038011695906432746, 0.04093567251461988, 0.043859649122807015, 0.04093567251461988, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.029239766081871343, 0.02631578947368421, 0.023391812865497075, 0.023391812865497075, 0.02046783625730994, 0.02046783625730994, 0.02046783625730994, 0.02046783625730994, 0.02046783625730994, 0.02046783625730994, 0.02046783625730994, 0.02046783625730994, 0.017543859649122806, 0.017543859649122806, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.02046783625730994, 0.014619883040935672, 0.014619883040935672, 0.011695906432748537, 0.011695906432748537, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.005847953216374269, 0.005847953216374269, 0.008771929824561403, 0.008771929824561403, 0.005847953216374269, 0.005847953216374269, 0.011695906432748537, 0.014619883040935672, 0.005847953216374269, 0.005847953216374269, 0.011695906432748537, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.014619883040935672, 0.017543859649122806, 0.02046783625730994, 0.02046783625730994, 0.02046783625730994, 0.023391812865497075, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.038011695906432746, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.05263157894736842, 0.05263157894736842, 0.05847953216374269, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06725146198830409, 0.07309941520467836, 0.07602339181286549, 0.07602339181286549, 0.08187134502923976, 0.09064327485380116, 0.13450292397660818, 0.2573099415204678, 0.8567251461988304], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4202.gap.json b/pfam_gap_rates/DUF4202.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b70a11a4f6aa30cf62bff99eb5c232afab99272
--- /dev/null
+++ b/pfam_gap_rates/DUF4202.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4202", "n_seqs": 145, "length": 206, "gap_rates": [0.8, 0.20689655172413793, 0.15172413793103448, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.12413793103448276, 0.1724137931034483, 0.1724137931034483, 0.1793103448275862, 0.1724137931034483, 0.18620689655172415, 0.9172413793103448, 0.31724137931034485, 0.31724137931034485, 0.296551724137931, 0.2482758620689655, 0.20689655172413793, 0.47586206896551725, 0.06206896551724138, 0.04827586206896552, 0.05517241379310345, 0.04827586206896552, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.020689655172413793, 0.020689655172413793, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.9448275862068966, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.027586206896551724, 0.041379310344827586, 0.034482758620689655, 0.04827586206896552, 0.05517241379310345, 0.041379310344827586, 0.04827586206896552, 0.05517241379310345, 0.041379310344827586, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.0, 0.0, 0.0, 0.0, 0.013793103448275862, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9172413793103448, 0.9241379310344827, 0.9172413793103448, 0.9103448275862069, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9310344827586207, 0.9379310344827586, 0.9379310344827586, 0.9241379310344827, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9103448275862069, 0.9379310344827586, 0.9448275862068966, 0.9241379310344827, 0.8551724137931035, 0.013793103448275862, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6344827586206897, 0.6068965517241379, 0.8206896551724138, 0.020689655172413793, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.013793103448275862, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.034482758620689655, 0.06206896551724138, 0.9448275862068966, 0.8620689655172413, 0.06206896551724138, 0.06206896551724138, 0.9448275862068966, 0.9310344827586207, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.08275862068965517, 0.09655172413793103, 0.13793103448275862, 0.1793103448275862, 0.19310344827586207, 0.23448275862068965, 0.3310344827586207], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4212.gap.json b/pfam_gap_rates/DUF4212.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9768926addad6c3aa7453afcfa21d65847869fd5
--- /dev/null
+++ b/pfam_gap_rates/DUF4212.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4217.gap.json b/pfam_gap_rates/DUF4217.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d251a0a820af26dac11971573b2575ba887d917
--- /dev/null
+++ b/pfam_gap_rates/DUF4217.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4233.gap.json b/pfam_gap_rates/DUF4233.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0517d8d776d09da7a307712c225064af7f0213be
--- /dev/null
+++ b/pfam_gap_rates/DUF4233.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4238.gap.json b/pfam_gap_rates/DUF4238.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..852f9366081dcf40873f4833be9c6dfe9d3afdba
--- /dev/null
+++ b/pfam_gap_rates/DUF4238.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4244.gap.json b/pfam_gap_rates/DUF4244.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b2726d9e86ed47498f838713750078a8b010a11
--- /dev/null
+++ b/pfam_gap_rates/DUF4244.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4244", "n_seqs": 207, "length": 53, "gap_rates": [0.7971014492753623, 0.6618357487922706, 0.45410628019323673, 0.36231884057971014, 0.2560386473429952, 0.15942028985507245, 0.0821256038647343, 0.05314009661835749, 0.043478260869565216, 0.03864734299516908, 0.03864734299516908, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.014492753623188406, 0.014492753623188406, 0.01932367149758454, 0.01932367149758454, 0.01932367149758454, 0.01932367149758454, 0.024154589371980676, 0.028985507246376812, 0.033816425120772944, 0.03864734299516908, 0.043478260869565216, 0.043478260869565216, 0.04830917874396135, 0.05314009661835749, 0.05314009661835749, 0.057971014492753624, 0.0821256038647343, 0.10628019323671498, 0.1111111111111111, 0.12560386473429952, 0.4444444444444444], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4252.gap.json b/pfam_gap_rates/DUF4252.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..658eb7f597feea49eaaf0bc182e1351d6c02844b
--- /dev/null
+++ b/pfam_gap_rates/DUF4252.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4252", "n_seqs": 166, "length": 197, "gap_rates": [0.9216867469879518, 0.7409638554216867, 0.45180722891566266, 0.3313253012048193, 0.2469879518072289, 0.21686746987951808, 0.18674698795180722, 0.14457831325301204, 0.16265060240963855, 0.13855421686746988, 0.1144578313253012, 0.12048192771084337, 0.20481927710843373, 0.27710843373493976, 0.29518072289156627, 0.3373493975903614, 0.3433734939759036, 0.26506024096385544, 0.9457831325301205, 0.9156626506024096, 0.13855421686746988, 0.16265060240963855, 0.6325301204819277, 0.4939759036144578, 0.5, 0.42168674698795183, 0.3674698795180723, 0.3433734939759036, 0.2891566265060241, 0.19879518072289157, 0.1144578313253012, 0.08433734939759036, 0.07228915662650602, 0.06626506024096386, 0.05421686746987952, 0.9337349397590361, 0.07228915662650602, 0.05421686746987952, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.03614457831325301, 0.06626506024096386, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.9036144578313253, 0.9457831325301205, 0.9337349397590361, 0.8734939759036144, 0.030120481927710843, 0.030120481927710843, 0.0963855421686747, 0.22289156626506024, 0.23493975903614459, 0.24096385542168675, 0.2469879518072289, 0.3072289156626506, 0.30120481927710846, 0.24096385542168675, 0.8975903614457831, 0.9337349397590361, 0.8313253012048193, 0.03614457831325301, 0.03614457831325301, 0.024096385542168676, 0.030120481927710843, 0.024096385542168676, 0.012048192771084338, 0.006024096385542169, 0.8373493975903614, 0.8554216867469879, 0.8192771084337349, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8072289156626506, 0.9156626506024096, 0.8493975903614458, 0.7289156626506024, 0.20481927710843373, 0.15060240963855423, 0.006024096385542169, 0.0, 0.0, 0.0, 0.006024096385542169, 0.012048192771084338, 0.0, 0.8614457831325302, 0.9156626506024096, 0.891566265060241, 0.8493975903614458, 0.0, 0.0, 0.0, 0.0, 0.0, 0.024096385542168676, 0.018072289156626505, 0.0, 0.0, 0.012048192771084338, 0.024096385542168676, 0.7951807228915663, 0.8795180722891566, 0.7469879518072289, 0.0, 0.0, 0.0, 0.006024096385542169, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.9397590361445783, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.018072289156626505, 0.018072289156626505, 0.8614457831325302, 0.04819277108433735, 0.8674698795180723, 0.7831325301204819, 0.03614457831325301, 0.030120481927710843, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.8192771084337349, 0.012048192771084338, 0.018072289156626505, 0.891566265060241, 0.9156626506024096, 0.9397590361445783, 0.9457831325301205, 0.9457831325301205, 0.9337349397590361, 0.9036144578313253, 0.8855421686746988, 0.08433734939759036, 0.9397590361445783, 0.8072289156626506, 0.018072289156626505, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.8614457831325302, 0.018072289156626505, 0.018072289156626505, 0.030120481927710843, 0.03614457831325301, 0.04216867469879518, 0.060240963855421686, 0.060240963855421686, 0.07228915662650602, 0.12048192771084337, 0.13855421686746988, 0.2710843373493976, 0.7771084337349398], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4266.gap.json b/pfam_gap_rates/DUF4266.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cf47b45ca1f2cf283a6168491d2b884586181b7
--- /dev/null
+++ b/pfam_gap_rates/DUF4266.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4266", "n_seqs": 123, "length": 51, "gap_rates": [0.10569105691056911, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.3170731707317073, 0.024390243902439025, 0.008130081300813009, 0.008130081300813009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6829268292682927, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.11382113821138211], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4268.gap.json b/pfam_gap_rates/DUF4268.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af779b35431bec13a982b4b1945ea06dff21b4ca
--- /dev/null
+++ b/pfam_gap_rates/DUF4268.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4268", "n_seqs": 144, "length": 148, "gap_rates": [0.4236111111111111, 0.09027777777777778, 0.04861111111111111, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.1875, 0.8263888888888888, 0.8680555555555556, 0.7361111111111112, 0.3680555555555556, 0.4166666666666667, 0.4097222222222222, 0.4097222222222222, 0.2708333333333333, 0.2013888888888889, 0.18055555555555555, 0.1736111111111111, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.013888888888888888, 0.020833333333333332, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.020833333333333332, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.7152777777777778, 0.6736111111111112, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.2916666666666667, 0.2638888888888889, 0.3194444444444444, 0.2916666666666667, 0.2916666666666667, 0.041666666666666664, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006944444444444444, 0.05555555555555555, 0.006944444444444444, 0.0, 0.0, 0.0, 0.8958333333333334, 0.6805555555555556, 0.04861111111111111, 0.05555555555555555, 0.0625, 0.9444444444444444, 0.11805555555555555, 0.020833333333333332, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.013888888888888888, 0.006944444444444444, 0.125, 0.1388888888888889, 0.1388888888888889, 0.13194444444444445, 0.1875, 0.2847222222222222, 0.2569444444444444, 0.24305555555555555, 0.22916666666666666, 0.18055555555555555, 0.14583333333333334, 0.0763888888888889, 0.034722222222222224, 0.020833333333333332, 0.027777777777777776, 0.020833333333333332, 0.020833333333333332, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.041666666666666664, 0.041666666666666664, 0.0625, 0.10416666666666667, 0.3333333333333333, 0.7638888888888888], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4277.gap.json b/pfam_gap_rates/DUF4277.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d465e33ffe73c1576db30701cf0ef3ee7f363979
--- /dev/null
+++ b/pfam_gap_rates/DUF4277.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4277", "n_seqs": 358, "length": 109, "gap_rates": [0.5642458100558659, 0.4245810055865922, 0.388268156424581, 0.3547486033519553, 0.33519553072625696, 0.3100558659217877, 0.2988826815642458, 0.28212290502793297, 0.28212290502793297, 0.2737430167597765, 0.24581005586592178, 0.24581005586592178, 0.2346368715083799, 0.22905027932960895, 0.22346368715083798, 0.22346368715083798, 0.22346368715083798, 0.22346368715083798, 0.2206703910614525, 0.2206703910614525, 0.21508379888268156, 0.2122905027932961, 0.20949720670391062, 0.2011173184357542, 0.2011173184357542, 0.19832402234636873, 0.20391061452513967, 0.20391061452513967, 0.19832402234636873, 0.776536312849162, 0.18994413407821228, 0.19832402234636873, 0.2011173184357542, 0.2011173184357542, 0.23743016759776536, 0.23743016759776536, 0.23743016759776536, 0.22905027932960895, 0.2346368715083799, 0.23743016759776536, 0.23743016759776536, 0.2122905027932961, 0.20391061452513967, 0.20391061452513967, 0.20391061452513967, 0.1871508379888268, 0.1871508379888268, 0.18435754189944134, 0.1871508379888268, 0.18994413407821228, 0.19273743016759776, 0.35195530726256985, 0.2206703910614525, 0.19273743016759776, 0.19553072625698323, 0.19553072625698323, 0.19832402234636873, 0.20391061452513967, 0.20391061452513967, 0.20670391061452514, 0.20949720670391062, 0.2122905027932961, 0.2122905027932961, 0.2122905027932961, 0.2122905027932961, 0.276536312849162, 0.276536312849162, 0.276536312849162, 0.31564245810055863, 0.276536312849162, 0.2849162011173184, 0.2849162011173184, 0.2849162011173184, 0.23743016759776536, 0.25977653631284914, 0.25977653631284914, 0.19553072625698323, 0.19832402234636873, 0.2011173184357542, 0.2011173184357542, 0.20949720670391062, 0.20949720670391062, 0.20949720670391062, 0.20949720670391062, 0.2122905027932961, 0.21508379888268156, 0.21508379888268156, 0.2206703910614525, 0.22346368715083798, 0.22625698324022347, 0.22625698324022347, 0.2346368715083799, 0.2346368715083799, 0.2430167597765363, 0.2430167597765363, 0.24860335195530725, 0.28212290502793297, 0.30726256983240224, 0.30726256983240224, 0.3128491620111732, 0.31564245810055863, 0.31843575418994413, 0.31843575418994413, 0.33519553072625696, 0.3463687150837989, 0.36033519553072624, 0.36033519553072624, 0.5279329608938548, 0.8743016759776536], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF429.gap.json b/pfam_gap_rates/DUF429.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f18c6b1f57f9cc79504936965c76451993de3831
--- /dev/null
+++ b/pfam_gap_rates/DUF429.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4355.gap.json b/pfam_gap_rates/DUF4355.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed844ac13df005255c533ed70ae0b11d3c877544
--- /dev/null
+++ b/pfam_gap_rates/DUF4355.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4358.gap.json b/pfam_gap_rates/DUF4358.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf26c1e9346642252e0463d30507a2e65bcae538
--- /dev/null
+++ b/pfam_gap_rates/DUF4358.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4358", "n_seqs": 197, "length": 103, "gap_rates": [0.8121827411167513, 0.6395939086294417, 0.5786802030456852, 0.5076142131979695, 0.43147208121827413, 0.7208121827411168, 0.29441624365482233, 0.2639593908629442, 0.22842639593908629, 0.20304568527918782, 0.16751269035532995, 0.1319796954314721, 0.1065989847715736, 0.07106598984771574, 0.05583756345177665, 0.050761421319796954, 0.050761421319796954, 0.04568527918781726, 0.04568527918781726, 0.04060913705583756, 0.949238578680203, 0.025380710659898477, 0.025380710659898477, 0.025380710659898477, 0.02030456852791878, 0.02030456852791878, 0.04568527918781726, 0.050761421319796954, 0.02030456852791878, 0.02030456852791878, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.01015228426395939, 0.02030456852791878, 0.015228426395939087, 0.233502538071066, 0.02030456852791878, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01015228426395939, 0.0, 0.0, 0.13705583756345177, 0.116751269035533, 0.04568527918781726, 0.09644670050761421, 0.01015228426395939, 0.005076142131979695, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015228426395939087, 0.050761421319796954, 0.02030456852791878, 0.03553299492385787, 0.9441624365482234, 0.17258883248730963, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.03553299492385787, 0.1319796954314721, 0.4416243654822335], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4369.gap.json b/pfam_gap_rates/DUF4369.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d49758680e0236a850ae3124f69dbe720c72d01c
--- /dev/null
+++ b/pfam_gap_rates/DUF4369.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4369", "n_seqs": 523, "length": 126, "gap_rates": [0.7495219885277247, 0.5831739961759083, 0.4435946462715105, 0.30401529636711283, 0.1988527724665392, 0.08604206500956023, 0.05927342256214149, 0.04206500956022945, 0.028680688336520075, 0.021032504780114723, 0.015296367112810707, 0.015296367112810707, 0.015296367112810707, 0.015296367112810707, 0.015296367112810707, 0.01338432122370937, 0.9483747609942639, 0.8221797323135756, 0.030592734225621414, 0.08986615678776291, 0.06500956022944551, 0.0248565965583174, 0.021032504780114723, 0.015296367112810707, 0.0076481835564053535, 0.0057361376673040155, 0.0038240917782026767, 0.8049713193116634, 0.017208413001912046, 0.009560229445506692, 0.0057361376673040155, 0.009560229445506692, 0.021032504780114723, 0.8432122370936902, 0.9292543021032504, 0.745697896749522, 0.2294455066921606, 0.11854684512428298, 0.055449330783938815, 0.015296367112810707, 0.0057361376673040155, 0.0057361376673040155, 0.0038240917782026767, 0.0057361376673040155, 0.015296367112810707, 0.01338432122370937, 0.0076481835564053535, 0.751434034416826, 0.0076481835564053535, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.9407265774378585, 0.0038240917782026767, 0.0038240917782026767, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0038240917782026767, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.8661567877629063, 0.01338432122370937, 0.0057361376673040155, 0.0019120458891013384, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019120458891013384, 0.0076481835564053535, 0.6309751434034416, 0.7189292543021033, 0.8107074569789675, 0.8508604206500956, 0.9005736137667304, 0.9369024856596558, 0.869980879541109, 0.8279158699808795, 0.7418738049713193, 0.6845124282982792, 0.5831739961759083, 0.3632887189292543, 0.12045889101338432, 0.009560229445506692, 0.0057361376673040155, 0.0057361376673040155, 0.0057361376673040155, 0.0057361376673040155, 0.0076481835564053535, 0.0076481835564053535, 0.7036328871892925, 0.009560229445506692, 0.0076481835564053535, 0.0076481835564053535, 0.009560229445506692, 0.015296367112810707, 0.017208413001912046, 0.0248565965583174, 0.02676864244741874, 0.03824091778202677, 0.10133843212237094, 0.23135755258126195, 0.42065009560229444, 0.9139579349904398, 0.9426386233269598, 0.9273422562141491, 0.6749521988527725, 0.2829827915869981, 0.10325047801147227, 0.07648183556405354, 0.06692160611854685, 0.07265774378585087, 0.0745697896749522, 0.07839388145315487, 0.08795411089866156, 0.1147227533460803, 0.16634799235181644, 0.23709369024856597, 0.3193116634799235, 0.5697896749521989], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4384.gap.json b/pfam_gap_rates/DUF4384.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86f964ef86fa1ae14a86b801ca966330a10bef4b
--- /dev/null
+++ b/pfam_gap_rates/DUF4384.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4384", "n_seqs": 279, "length": 97, "gap_rates": [0.8458781362007168, 0.2974910394265233, 0.21505376344086022, 0.14336917562724014, 0.1003584229390681, 0.06093189964157706, 0.04659498207885305, 0.035842293906810034, 0.025089605734767026, 0.025089605734767026, 0.025089605734767026, 0.021505376344086023, 0.021505376344086023, 0.017921146953405017, 0.014336917562724014, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.8853046594982079, 0.8781362007168458, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.014336917562724014, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.0035842293906810036, 0.921146953405018, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0, 0.007168458781362007, 0.05017921146953405, 0.899641577060932, 0.12544802867383512, 0.12186379928315412, 0.1003584229390681, 0.8351254480286738, 0.14336917562724014, 0.7956989247311828, 0.8566308243727598, 0.9139784946236559, 0.9498207885304659, 0.9354838709677419, 0.8637992831541219, 0.8279569892473119, 0.7885304659498208, 0.06451612903225806, 0.04659498207885305, 0.02867383512544803, 0.017921146953405017, 0.014336917562724014, 0.007168458781362007, 0.0035842293906810036, 0.0035842293906810036, 0.0, 0.0, 0.0, 0.05017921146953405, 0.021505376344086023, 0.007168458781362007, 0.31899641577060933, 0.3870967741935484, 0.8888888888888888, 0.9175627240143369, 0.8028673835125448, 0.11469534050179211, 0.03942652329749104, 0.02867383512544803, 0.014336917562724014, 0.0035842293906810036, 0.0035842293906810036, 0.007168458781362007, 0.021505376344086023, 0.010752688172043012, 0.010752688172043012, 0.014336917562724014, 0.1003584229390681, 0.010752688172043012, 0.010752688172043012, 0.017921146953405017, 0.017921146953405017, 0.017921146953405017, 0.021505376344086023, 0.025089605734767026, 0.02867383512544803, 0.03225806451612903, 0.1003584229390681, 0.13978494623655913, 0.2867383512544803, 0.5627240143369175], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4387.gap.json b/pfam_gap_rates/DUF4387.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2eca5e8973feab3bfdecab617f540e56ca82959
--- /dev/null
+++ b/pfam_gap_rates/DUF4387.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4387", "n_seqs": 121, "length": 103, "gap_rates": [0.15702479338842976, 0.024793388429752067, 0.024793388429752067, 0.01652892561983471, 0.0, 0.0, 0.008264462809917356, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01652892561983471, 0.09090909090909091, 0.08264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008264462809917356, 0.2727272727272727, 0.01652892561983471, 0.008264462809917356, 0.0, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.8842975206611571, 0.8842975206611571, 0.8842975206611571, 0.8842975206611571, 0.8760330578512396, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.04132231404958678, 0.05785123966942149, 0.06611570247933884, 0.06611570247933884, 0.0743801652892562, 0.11570247933884298, 0.19834710743801653, 0.7272727272727273], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4398.gap.json b/pfam_gap_rates/DUF4398.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..252e08834ee639d1ecdb21f26ecdb599d83d3917
--- /dev/null
+++ b/pfam_gap_rates/DUF4398.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4398", "n_seqs": 173, "length": 108, "gap_rates": [0.7630057803468208, 0.18497109826589594, 0.09248554913294797, 0.07514450867052024, 0.057803468208092484, 0.046242774566473986, 0.04046242774566474, 0.04046242774566474, 0.04046242774566474, 0.05202312138728324, 0.9190751445086706, 0.8034682080924855, 0.4797687861271676, 0.23121387283236994, 0.017341040462427744, 0.017341040462427744, 0.9421965317919075, 0.8959537572254336, 0.028901734104046242, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005780346820809248, 0.0, 0.0, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.6820809248554913, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005780346820809248, 0.005780346820809248, 0.017341040462427744, 0.9190751445086706, 0.9190751445086706, 0.046242774566473986, 0.011560693641618497, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.011560693641618497, 0.011560693641618497, 0.6763005780346821, 0.03468208092485549, 0.017341040462427744, 0.017341040462427744, 0.0, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.017341040462427744, 0.028901734104046242, 0.04046242774566474, 0.07514450867052024, 0.08670520231213873, 0.10404624277456648, 0.10982658959537572, 0.1329479768786127, 0.13872832369942195, 0.15028901734104047, 0.15028901734104047, 0.17341040462427745, 0.20809248554913296, 0.21965317919075145, 0.2254335260115607, 0.23121387283236994, 0.2658959537572254, 0.28901734104046245, 0.3179190751445087, 0.41040462427745666, 0.5722543352601156], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4416.gap.json b/pfam_gap_rates/DUF4416.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52f3c1e0818a43ad1225921712a1e35d7babc83d
--- /dev/null
+++ b/pfam_gap_rates/DUF4416.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4416", "n_seqs": 108, "length": 168, "gap_rates": [0.39814814814814814, 0.16666666666666666, 0.12962962962962962, 0.07407407407407407, 0.046296296296296294, 0.046296296296296294, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.027777777777777776, 0.027777777777777776, 0.9444444444444444, 0.09259259259259259, 0.6944444444444444, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.046296296296296294, 0.05555555555555555, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.027777777777777776, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.018518518518518517, 0.027777777777777776, 0.009259259259259259, 0.018518518518518517, 0.8425925925925926, 0.027777777777777776, 0.018518518518518517, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.046296296296296294, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.027777777777777776, 0.027777777777777776, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8240740740740741, 0.0, 0.05555555555555555, 0.027777777777777776, 0.8425925925925926, 0.9166666666666666, 0.8611111111111112, 0.8425925925925926, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009259259259259259, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.027777777777777776, 0.027777777777777776, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.046296296296296294, 0.25925925925925924, 0.3055555555555556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4439.gap.json b/pfam_gap_rates/DUF4439.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da576941f598cd76a2bf7cafb565e3b2506eb8d7
--- /dev/null
+++ b/pfam_gap_rates/DUF4439.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4439", "n_seqs": 127, "length": 139, "gap_rates": [0.3937007874015748, 0.2440944881889764, 0.2125984251968504, 0.1889763779527559, 0.1732283464566929, 0.13385826771653545, 0.11811023622047244, 0.10236220472440945, 0.08661417322834646, 0.07086614173228346, 0.07086614173228346, 0.06299212598425197, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.047244094488188976, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.889763779527559, 0.031496062992125984, 0.047244094488188976, 0.023622047244094488, 0.015748031496062992, 0.031496062992125984, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.023622047244094488, 0.023622047244094488, 0.031496062992125984, 0.031496062992125984, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.031496062992125984, 0.031496062992125984, 0.05511811023622047, 0.03937007874015748, 0.03937007874015748, 0.031496062992125984, 0.031496062992125984, 0.05511811023622047, 0.03937007874015748, 0.03937007874015748, 0.047244094488188976, 0.047244094488188976, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.08661417322834646, 0.13385826771653545, 0.06299212598425197, 0.05511811023622047, 0.031496062992125984, 0.023622047244094488, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.031496062992125984, 0.015748031496062992, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.015748031496062992, 0.007874015748031496, 0.5748031496062992, 0.023622047244094488, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.015748031496062992, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.03937007874015748, 0.03937007874015748, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.06299212598425197, 0.07086614173228346, 0.07086614173228346, 0.07874015748031496, 0.07874015748031496, 0.08661417322834646, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.5984251968503937, 0.5984251968503937, 0.6299212598425197, 0.6062992125984252, 0.5984251968503937, 0.5905511811023622, 0.09448818897637795, 0.10236220472440945, 0.10236220472440945, 0.11023622047244094, 0.15748031496062992, 0.3700787401574803, 0.7007874015748031], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4449.gap.json b/pfam_gap_rates/DUF4449.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d8a803d6844eff8a1a69c6b4bd76d5d16b38f8b
--- /dev/null
+++ b/pfam_gap_rates/DUF4449.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4449", "n_seqs": 179, "length": 174, "gap_rates": [0.2681564245810056, 0.16201117318435754, 0.1340782122905028, 0.0335195530726257, 0.0223463687150838, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.0223463687150838, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.01675977653631285, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.0111731843575419, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00558659217877095, 0.00558659217877095, 0.01675977653631285, 0.0223463687150838, 0.027932960893854747, 0.027932960893854747, 0.027932960893854747, 0.0446927374301676, 0.1452513966480447, 0.10614525139664804, 0.1452513966480447, 0.16759776536312848, 0.16201117318435754, 0.18994413407821228, 0.19553072625698323, 0.2122905027932961, 0.8547486033519553, 0.8156424581005587, 0.48044692737430167, 0.4581005586592179, 0.45251396648044695, 0.43575418994413406, 0.441340782122905, 0.4692737430167598, 0.45251396648044695, 0.44692737430167595, 0.43575418994413406, 0.43575418994413406, 0.2569832402234637, 0.25139664804469275, 0.2569832402234637, 0.2569832402234637, 0.2569832402234637, 0.26256983240223464, 0.26256983240223464, 0.26256983240223464, 0.27932960893854747, 0.27932960893854747, 0.2849162011173184, 0.2849162011173184, 0.27932960893854747, 0.2849162011173184, 0.2849162011173184, 0.2849162011173184, 0.2905027932960894, 0.2905027932960894, 0.29608938547486036, 0.7486033519553073, 0.8268156424581006, 0.659217877094972, 0.9273743016759777, 0.9329608938547486, 0.9441340782122905, 0.9273743016759777, 0.9217877094972067, 0.5977653631284916, 0.553072625698324, 0.3407821229050279, 0.3240223463687151, 0.30726256983240224, 0.9497206703910615, 0.3016759776536313, 0.3016759776536313, 0.3016759776536313, 0.3016759776536313, 0.3016759776536313, 0.3016759776536313, 0.3016759776536313, 0.30726256983240224, 0.30726256983240224, 0.30726256983240224, 0.30726256983240224, 0.30726256983240224, 0.30726256983240224, 0.30726256983240224, 0.30726256983240224, 0.36312849162011174, 0.3128491620111732, 0.3240223463687151, 0.31843575418994413, 0.31843575418994413, 0.33519553072625696, 0.3407821229050279, 0.35195530726256985, 0.35195530726256985, 0.3463687150837989, 0.3463687150837989, 0.3463687150837989, 0.35195530726256985, 0.35195530726256985, 0.3575418994413408, 0.3575418994413408, 0.3575418994413408, 0.35195530726256985, 0.35195530726256985, 0.35195530726256985, 0.35195530726256985, 0.35195530726256985, 0.35195530726256985, 0.35195530726256985, 0.9497206703910615, 0.9497206703910615, 0.35195530726256985, 0.35195530726256985, 0.35195530726256985, 0.35195530726256985, 0.35195530726256985, 0.35195530726256985, 0.3687150837988827, 0.37988826815642457, 0.3854748603351955, 0.40782122905027934, 0.5083798882681564, 0.5083798882681564, 0.5363128491620112, 0.547486033519553, 0.5642458100558659, 0.5754189944134078, 0.5977653631284916, 0.6256983240223464, 0.6312849162011173], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4460.gap.json b/pfam_gap_rates/DUF4460.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40e11dcad2598dd7a35f6b95806826de73dad8d9
--- /dev/null
+++ b/pfam_gap_rates/DUF4460.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4460", "n_seqs": 135, "length": 125, "gap_rates": [0.8, 0.5185185185185185, 0.4444444444444444, 0.3925925925925926, 0.35555555555555557, 0.3333333333333333, 0.3037037037037037, 0.24444444444444444, 0.14814814814814814, 0.05925925925925926, 0.05185185185185185, 0.05185185185185185, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.037037037037037035, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.022222222222222223, 0.014814814814814815, 0.8740740740740741, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.022222222222222223, 0.022222222222222223, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.11851851851851852, 0.2740740740740741, 0.4, 0.837037037037037, 0.9259259259259259, 0.7037037037037037, 0.18518518518518517, 0.14074074074074075, 0.11851851851851852, 0.15555555555555556, 0.6296296296296297, 0.5481481481481482, 0.13333333333333333, 0.1259259259259259, 0.11851851851851852, 0.11851851851851852, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11851851851851852, 0.1259259259259259, 0.7407407407407407, 0.8518518518518519, 0.8592592592592593, 0.8, 0.6814814814814815, 0.5703703703703704, 0.5259259259259259, 0.5407407407407407, 0.48148148148148145, 0.3851851851851852, 0.3851851851851852, 0.26666666666666666, 0.25925925925925924, 0.25925925925925924, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.2814814814814815, 0.28888888888888886, 0.28888888888888886, 0.2962962962962963, 0.31851851851851853, 0.31851851851851853, 0.31851851851851853, 0.8222222222222222, 0.8074074074074075, 0.9333333333333333, 0.35555555555555557, 0.34814814814814815, 0.34814814814814815, 0.34814814814814815, 0.8666666666666667, 0.8962962962962963, 0.9111111111111111, 0.9037037037037037, 0.8666666666666667, 0.8666666666666667, 0.34814814814814815, 0.362962962962963, 0.35555555555555557, 0.35555555555555557, 0.35555555555555557, 0.35555555555555557, 0.362962962962963, 0.3851851851851852, 0.4, 0.4074074074074074, 0.4222222222222222, 0.42962962962962964, 0.45185185185185184, 0.5333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4483.gap.json b/pfam_gap_rates/DUF4483.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26bb62c8c9a810b5015e66792b1b247095e9da64
--- /dev/null
+++ b/pfam_gap_rates/DUF4483.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4499.gap.json b/pfam_gap_rates/DUF4499.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d5e6f2c9772f5810c67eeeeff9cc1e4b0f8c137
--- /dev/null
+++ b/pfam_gap_rates/DUF4499.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4499", "n_seqs": 136, "length": 93, "gap_rates": [0.8676470588235294, 0.5735294117647058, 0.47058823529411764, 0.4264705882352941, 0.4117647058823529, 0.3897058823529412, 0.34558823529411764, 0.3235294117647059, 0.3161764705882353, 0.3161764705882353, 0.3235294117647059, 0.3161764705882353, 0.3235294117647059, 0.3161764705882353, 0.3088235294117647, 0.3161764705882353, 0.29411764705882354, 0.47794117647058826, 0.4485294117647059, 0.22058823529411764, 0.22058823529411764, 0.23529411764705882, 0.2426470588235294, 0.22058823529411764, 0.21323529411764705, 0.20588235294117646, 0.6691176470588235, 0.6176470588235294, 0.8970588235294118, 0.19117647058823528, 0.16176470588235295, 0.14705882352941177, 0.13970588235294118, 0.1323529411764706, 0.1323529411764706, 0.16911764705882354, 0.13970588235294118, 0.08823529411764706, 0.10294117647058823, 0.09558823529411764, 0.058823529411764705, 0.03676470588235294, 0.03676470588235294, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.051470588235294115, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.7941176470588235, 0.27941176470588236, 0.25, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.051470588235294115, 0.051470588235294115, 0.07352941176470588, 0.08088235294117647, 0.09558823529411764, 0.14705882352941177, 0.19117647058823528, 0.5441176470588235], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4539.gap.json b/pfam_gap_rates/DUF4539.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..faa3d9782d27da15687a32918b155a49a01f1ae3
--- /dev/null
+++ b/pfam_gap_rates/DUF4539.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4539", "n_seqs": 114, "length": 92, "gap_rates": [0.5701754385964912, 0.11403508771929824, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.631578947368421, 0.043859649122807015, 0.043859649122807015, 0.03508771929824561, 0.05263157894736842, 0.05263157894736842, 0.5175438596491229, 0.30701754385964913, 0.03508771929824561, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03508771929824561, 0.02631578947368421, 0.017543859649122806, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7543859649122807, 0.7192982456140351, 0.0, 0.0, 0.017543859649122806, 0.043859649122807015, 0.03508771929824561, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.8596491228070176, 0.06140350877192982, 0.03508771929824561, 0.017543859649122806, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03508771929824561, 0.03508771929824561, 0.043859649122807015, 0.07017543859649122, 0.14035087719298245, 0.38596491228070173, 0.8859649122807017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF455.gap.json b/pfam_gap_rates/DUF455.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f316f5f4cb4c9cb38bfc5162c5335f0a8e1b7e2f
--- /dev/null
+++ b/pfam_gap_rates/DUF455.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4602.gap.json b/pfam_gap_rates/DUF4602.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c52abaa84aed09f95310adefc104c9f3a841649
--- /dev/null
+++ b/pfam_gap_rates/DUF4602.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4743.gap.json b/pfam_gap_rates/DUF4743.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a37d8eed3a5a5f97f7d32620713f143d725a07c
--- /dev/null
+++ b/pfam_gap_rates/DUF4743.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4779.gap.json b/pfam_gap_rates/DUF4779.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98e05ba1424864ce710ecb94aaf461c77a9d22af
--- /dev/null
+++ b/pfam_gap_rates/DUF4779.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4835.gap.json b/pfam_gap_rates/DUF4835.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a36db9628be0700b6f54981c0cd4a03f411dcf3
--- /dev/null
+++ b/pfam_gap_rates/DUF4835.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4838.gap.json b/pfam_gap_rates/DUF4838.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..579212eec4190b75919d8f5220350d9ffcdaabbb
--- /dev/null
+++ b/pfam_gap_rates/DUF4838.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4876.gap.json b/pfam_gap_rates/DUF4876.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7da8eb65563a8b0edd00df417cff9e2c63f93815
--- /dev/null
+++ b/pfam_gap_rates/DUF4876.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF489.gap.json b/pfam_gap_rates/DUF489.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1d7985728d7874c6fdb32e08f7e35fc2e80c3b4
--- /dev/null
+++ b/pfam_gap_rates/DUF489.gap.json
@@ -0,0 +1 @@
+{"family": "DUF489", "n_seqs": 180, "length": 195, "gap_rates": [0.28888888888888886, 0.1111111111111111, 0.06111111111111111, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.05, 0.044444444444444446, 0.044444444444444446, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.07222222222222222, 0.7055555555555556, 0.07222222222222222, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.9111111111111111, 0.4444444444444444, 0.2722222222222222, 0.12777777777777777, 0.06111111111111111, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.06666666666666667, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.8722222222222222, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.06111111111111111, 0.05, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03888888888888889, 0.07222222222222222, 0.21666666666666667, 0.9], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4964.gap.json b/pfam_gap_rates/DUF4964.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acf7ca50c6bf85a48417b73e86f7d4cdd2894362
--- /dev/null
+++ b/pfam_gap_rates/DUF4964.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4964", "n_seqs": 129, "length": 95, "gap_rates": [0.8837209302325582, 0.8449612403100775, 0.8294573643410853, 0.8217054263565892, 0.8217054263565892, 0.8062015503875969, 0.8062015503875969, 0.8062015503875969, 0.7906976744186046, 0.7906976744186046, 0.7751937984496124, 0.7829457364341085, 0.8449612403100775, 0.8062015503875969, 0.7596899224806202, 0.7209302325581395, 0.6589147286821705, 0.5271317829457365, 0.4263565891472868, 0.3178294573643411, 0.2713178294573643, 0.1937984496124031, 0.11627906976744186, 0.046511627906976744, 0.015503875968992248, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9302325581395349, 0.9302325581395349, 0.9302325581395349, 0.0, 0.0, 0.0, 0.8604651162790697, 0.8682170542635659, 0.8604651162790697, 0.0, 0.0, 0.9302325581395349, 0.9302325581395349, 0.9224806201550387, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015503875968992248, 0.031007751937984496, 0.20155038759689922, 0.3488372093023256, 0.5038759689922481, 0.6666666666666666, 0.6976744186046512, 0.7441860465116279, 0.751937984496124, 0.7596899224806202, 0.7984496124031008, 0.8837209302325582], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4981.gap.json b/pfam_gap_rates/DUF4981.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fda528845524c7ec173cc09577995200b3e02651
--- /dev/null
+++ b/pfam_gap_rates/DUF4981.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF501.gap.json b/pfam_gap_rates/DUF501.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98569ee66dfd89e8f6ef9f6a9d4172c88865fc56
--- /dev/null
+++ b/pfam_gap_rates/DUF501.gap.json
@@ -0,0 +1 @@
+{"family": "DUF501", "n_seqs": 325, "length": 151, "gap_rates": [0.7046153846153846, 0.24615384615384617, 0.16615384615384615, 0.14153846153846153, 0.12923076923076923, 0.12307692307692308, 0.1076923076923077, 0.08615384615384615, 0.08923076923076922, 0.08615384615384615, 0.08615384615384615, 0.08615384615384615, 0.08615384615384615, 0.08615384615384615, 0.08615384615384615, 0.08307692307692308, 0.08, 0.08307692307692308, 0.8861538461538462, 0.8861538461538462, 0.8892307692307693, 0.19692307692307692, 0.11076923076923077, 0.09846153846153846, 0.08923076923076922, 0.06769230769230769, 0.916923076923077, 0.9415384615384615, 0.9476923076923077, 0.9323076923076923, 0.916923076923077, 0.06153846153846154, 0.04923076923076923, 0.046153846153846156, 0.046153846153846156, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.052307692307692305, 0.052307692307692305, 0.052307692307692305, 0.052307692307692305, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.043076923076923075, 0.046153846153846156, 0.046153846153846156, 0.052307692307692305, 0.07384615384615385, 0.08307692307692308, 0.08307692307692308, 0.08923076923076922, 0.08923076923076922, 0.08, 0.07384615384615385, 0.07076923076923076, 0.08, 0.07692307692307693, 0.07384615384615385, 0.06769230769230769, 0.07076923076923076, 0.07384615384615385, 0.07692307692307693, 0.07692307692307693, 0.07384615384615385, 0.07384615384615385, 0.07076923076923076, 0.07076923076923076, 0.07076923076923076, 0.08, 0.25846153846153846, 0.2676923076923077, 0.3415384615384615, 0.40615384615384614, 0.4707692307692308, 0.5538461538461539, 0.47384615384615386, 0.46153846153846156, 0.4707692307692308, 0.7476923076923077, 0.7723076923076924, 0.7815384615384615, 0.7815384615384615, 0.7723076923076924, 0.7692307692307693, 0.9015384615384615, 0.8861538461538462, 0.4123076923076923, 0.3569230769230769, 0.23076923076923078, 0.8953846153846153, 0.11076923076923077, 0.08615384615384615, 0.07692307692307693, 0.06769230769230769, 0.06769230769230769, 0.06769230769230769, 0.06769230769230769, 0.06769230769230769, 0.06769230769230769, 0.9261538461538461, 0.9261538461538461, 0.7538461538461538, 0.76, 0.07384615384615385, 0.07384615384615385, 0.06769230769230769, 0.06769230769230769, 0.06769230769230769, 0.06769230769230769, 0.07076923076923076, 0.07076923076923076, 0.07384615384615385, 0.07384615384615385, 0.07384615384615385, 0.07384615384615385, 0.07384615384615385, 0.07384615384615385, 0.07384615384615385, 0.07692307692307693, 0.35384615384615387, 0.3046153846153846, 0.19692307692307692, 0.14461538461538462, 0.15076923076923077, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.16, 0.19076923076923077, 0.24923076923076923, 0.5107692307692308], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF507.gap.json b/pfam_gap_rates/DUF507.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7315317cfad5e09ef3fa333d2c4f6c132d0e9a01
--- /dev/null
+++ b/pfam_gap_rates/DUF507.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF512.gap.json b/pfam_gap_rates/DUF512.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11c76d8e08b69fcf6ad37ce52c0728c7bdff7c2a
--- /dev/null
+++ b/pfam_gap_rates/DUF512.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF588.gap.json b/pfam_gap_rates/DUF588.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be618a78a5747a00b96ad5407f96ab631666dd71
--- /dev/null
+++ b/pfam_gap_rates/DUF588.gap.json
@@ -0,0 +1 @@
+{"family": "DUF588", "n_seqs": 987, "length": 163, "gap_rates": [0.7862208713272543, 0.5734549138804458, 0.3728470111448835, 0.26443768996960487, 0.1955420466058764, 0.16312056737588654, 0.1469098277608916, 0.12968591691995948, 0.12664640324214793, 0.12563323201621074, 0.12563323201621074, 0.12462006079027356, 0.12360688956433637, 0.12360688956433637, 0.12259371833839919, 0.12259371833839919, 0.12158054711246201, 0.11955420466058764, 0.11955420466058764, 0.11955420466058764, 0.11854103343465046, 0.11752786220871327, 0.11752786220871327, 0.11752786220871327, 0.11144883485309018, 0.11043566362715299, 0.1094224924012158, 0.1094224924012158, 0.1094224924012158, 0.1094224924012158, 0.44072948328267475, 0.46200607902735563, 0.46605876393110435, 0.46808510638297873, 0.5086119554204661, 0.7092198581560284, 0.8449848024316109, 0.889564336372847, 0.9098277608915907, 0.9493414387031408, 0.9159067882472138, 0.900709219858156, 0.8814589665653495, 0.8348530901722391, 0.6930091185410334, 0.4387031408308004, 0.42451874366767983, 0.3677811550151976, 0.2988855116514691, 0.2968591691995947, 0.2938196555217832, 0.2857142857142857, 0.10131712259371833, 0.09827760891590678, 0.10030395136778116, 0.09422492401215805, 0.09017223910840932, 0.08814589665653495, 0.08105369807497467, 0.0729483282674772, 0.06889564336372847, 0.06180344478216818, 0.05876393110435663, 0.05977710233029382, 0.05876393110435663, 0.05673758865248227, 0.05572441742654509, 0.0547112462006079, 0.0547112462006079, 0.05369807497467072, 0.0547112462006079, 0.0547112462006079, 0.05572441742654509, 0.05572441742654509, 0.05572441742654509, 0.0547112462006079, 0.05369807497467072, 0.05167173252279635, 0.05167173252279635, 0.05673758865248227, 0.0547112462006079, 0.12259371833839919, 0.13272543059777103, 0.13171225937183384, 0.20567375886524822, 0.24012158054711247, 0.40425531914893614, 0.41134751773049644, 0.7315096251266464, 0.9361702127659575, 0.45896656534954405, 0.13779128672745694, 0.11854103343465046, 0.08409321175278622, 0.09321175278622088, 0.07598784194528875, 0.05876393110435663, 0.057750759878419454, 0.05673758865248227, 0.05572441742654509, 0.05572441742654509, 0.05673758865248227, 0.057750759878419454, 0.05673758865248227, 0.05673758865248227, 0.04559270516717325, 0.04559270516717325, 0.05167173252279635, 0.06281661600810537, 0.06889564336372847, 0.07092198581560284, 0.0729483282674772, 0.07497467071935157, 0.07801418439716312, 0.0790273556231003, 0.0790273556231003, 0.08105369807497467, 0.08206686930091185, 0.08206686930091185, 0.08409321175278622, 0.08308004052684904, 0.08308004052684904, 0.08409321175278622, 0.12968591691995948, 0.09219858156028368, 0.09017223910840932, 0.12056737588652482, 0.10131712259371833, 0.09929078014184398, 0.3383991894630192, 0.3181357649442756, 0.3505572441742654, 0.5055724417426545, 0.5035460992907801, 0.502532928064843, 0.4275582573454914, 0.3839918946301925, 0.26038500506585616, 0.24518743667679838, 0.1651469098277609, 0.13171225937183384, 0.12259371833839919, 0.11550151975683891, 0.19351570415400202, 0.19148936170212766, 0.922998986828774, 0.10536980749746708, 0.10435663627152988, 0.10536980749746708, 0.10536980749746708, 0.10536980749746708, 0.10739614994934144, 0.10739614994934144, 0.1094224924012158, 0.1094224924012158, 0.11550151975683891, 0.11651469098277609, 0.11854103343465046, 0.12259371833839919, 0.12360688956433637, 0.13171225937183384, 0.17223910840932116, 0.4630192502532928], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF615.gap.json b/pfam_gap_rates/DUF615.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..027ac7370b6b8b7e22e9f57485f6eec4b2b35984
--- /dev/null
+++ b/pfam_gap_rates/DUF615.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF659.gap.json b/pfam_gap_rates/DUF659.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78b46ca769a1578c6b9d10d94a38bc403a65a15d
--- /dev/null
+++ b/pfam_gap_rates/DUF659.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF707.gap.json b/pfam_gap_rates/DUF707.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7112ec1248e44351b8bf84132450c361d6a25b5a
--- /dev/null
+++ b/pfam_gap_rates/DUF707.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF740.gap.json b/pfam_gap_rates/DUF740.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44ac37cb5d7f8b79cfab7aa4d4437c7b4547aac2
--- /dev/null
+++ b/pfam_gap_rates/DUF740.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF753.gap.json b/pfam_gap_rates/DUF753.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7029f9d7728a92bfa6945b6c6f9d133b4c17c634
--- /dev/null
+++ b/pfam_gap_rates/DUF753.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF756.gap.json b/pfam_gap_rates/DUF756.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05831ebe99046866e3264dcf322b14165ec24786
--- /dev/null
+++ b/pfam_gap_rates/DUF756.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF758.gap.json b/pfam_gap_rates/DUF758.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35ff89e1cfd6aa9e0a0089380a9f307613197442
--- /dev/null
+++ b/pfam_gap_rates/DUF758.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF760.gap.json b/pfam_gap_rates/DUF760.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9996dce1087c1faf69cae3507cca0efad055b26
--- /dev/null
+++ b/pfam_gap_rates/DUF760.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF778.gap.json b/pfam_gap_rates/DUF778.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c59be3ba15462020527d02d03835c5d366720a7
--- /dev/null
+++ b/pfam_gap_rates/DUF778.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF789.gap.json b/pfam_gap_rates/DUF789.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3f73dba48249cc223865b8bfcb78b93c6a8632b
--- /dev/null
+++ b/pfam_gap_rates/DUF789.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF790.gap.json b/pfam_gap_rates/DUF790.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5aafd801951a7f42efe610961212c07c141ebca5
--- /dev/null
+++ b/pfam_gap_rates/DUF790.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF814.gap.json b/pfam_gap_rates/DUF814.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2dcca81b3ea284ffa8145f1c5d2de100e3982e5
--- /dev/null
+++ b/pfam_gap_rates/DUF814.gap.json
@@ -0,0 +1 @@
+{"family": "DUF814", "n_seqs": 1626, "length": 106, "gap_rates": [0.7939729397293973, 0.6285362853628537, 0.4797047970479705, 0.36162361623616235, 0.25584255842558423, 0.12300123001230012, 0.08610086100861009, 0.06334563345633457, 0.05043050430504305, 0.042435424354243544, 0.04120541205412054, 0.033210332103321034, 0.032595325953259535, 0.03198031980319803, 0.03136531365313653, 0.03075030750307503, 0.03075030750307503, 0.03075030750307503, 0.02890528905289053, 0.02706027060270603, 0.02706027060270603, 0.027675276752767528, 0.2736777367773678, 0.03013530135301353, 0.027675276752767528, 0.03567035670356704, 0.027675276752767528, 0.025830258302583026, 0.024600246002460024, 0.023985239852398525, 0.023370233702337023, 0.028290282902829027, 0.033825338253382534, 0.020910209102091022, 0.024600246002460024, 0.022755227552275523, 0.02029520295202952, 0.019065190651906518, 0.02029520295202952, 0.014760147601476014, 0.012915129151291513, 0.011685116851168511, 0.011685116851168511, 0.012300123001230012, 0.012300123001230012, 0.011685116851168511, 0.011685116851168511, 0.01107011070110701, 0.010455104551045511, 0.012300123001230012, 0.011685116851168511, 0.011685116851168511, 0.015990159901599015, 0.046125461254612546, 0.22263222632226323, 0.26260762607626076, 0.6365313653136532, 0.7373923739237392, 0.9329643296432965, 0.7244772447724477, 0.48523985239852396, 0.04428044280442804, 0.027675276752767528, 0.022755227552275523, 0.01845018450184502, 0.019065190651906518, 0.020910209102091022, 0.020910209102091022, 0.02152521525215252, 0.02152521525215252, 0.02152521525215252, 0.02152521525215252, 0.02152521525215252, 0.022755227552275523, 0.023370233702337023, 0.566420664206642, 0.05227552275522755, 0.037515375153751536, 0.03690036900369004, 0.03874538745387454, 0.04059040590405904, 0.08118081180811808, 0.04981549815498155, 0.05227552275522755, 0.05350553505535055, 0.06088560885608856, 0.06334563345633457, 0.8480934809348093, 0.8517835178351784, 0.8603936039360394, 0.8653136531365314, 0.8665436654366544, 0.9348093480934809, 0.8665436654366544, 0.8616236162361623, 0.8579335793357934, 0.8499384993849939, 0.8462484624846248, 0.08302583025830258, 0.12976629766297662, 0.13468634686346864, 0.14022140221402213, 0.14883148831488316, 0.16297662976629768, 0.26199261992619927, 0.33579335793357934], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF837.gap.json b/pfam_gap_rates/DUF837.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa8285ecc8cbb553580038f1e152c02e1dde60e4
--- /dev/null
+++ b/pfam_gap_rates/DUF837.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF896.gap.json b/pfam_gap_rates/DUF896.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdeed3f2448af50088a49191eec95d3604be6b53
--- /dev/null
+++ b/pfam_gap_rates/DUF896.gap.json
@@ -0,0 +1 @@
+{"family": "DUF896", "n_seqs": 480, "length": 65, "gap_rates": [0.4666666666666667, 0.11458333333333333, 0.01875, 0.014583333333333334, 0.014583333333333334, 0.014583333333333334, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.014583333333333334, 0.014583333333333334, 0.014583333333333334, 0.9375, 0.0125, 0.010416666666666666, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.0020833333333333333, 0.0020833333333333333, 0.0020833333333333333, 0.0020833333333333333, 0.0020833333333333333, 0.0020833333333333333, 0.0020833333333333333, 0.0020833333333333333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0020833333333333333, 0.0020833333333333333, 0.0020833333333333333, 0.004166666666666667, 0.008333333333333333, 0.014583333333333334, 0.029166666666666667, 0.06666666666666667, 0.07291666666666667, 0.07916666666666666, 0.10833333333333334, 0.13333333333333333, 0.175, 0.19375, 0.40625, 0.3416666666666667, 0.4270833333333333, 0.4666666666666667, 0.4791666666666667, 0.50625, 0.55, 0.6125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF902.gap.json b/pfam_gap_rates/DUF902.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a42656e634058e2c22f8fa004bb4c8674ed700e
--- /dev/null
+++ b/pfam_gap_rates/DUF902.gap.json
@@ -0,0 +1 @@
+{"family": "DUF902", "n_seqs": 116, "length": 40, "gap_rates": [0.02586206896551724, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.0, 0.0, 0.0603448275862069, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04310344827586207, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.04310344827586207, 0.11206896551724138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF915.gap.json b/pfam_gap_rates/DUF915.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16b1b5bd8f5cc5d19b68e3bcdd643fe12e6ec310
--- /dev/null
+++ b/pfam_gap_rates/DUF915.gap.json
@@ -0,0 +1 @@
+{"family": "DUF915", "n_seqs": 315, "length": 256, "gap_rates": [0.8412698412698413, 0.7619047619047619, 0.6285714285714286, 0.5301587301587302, 0.41904761904761906, 0.346031746031746, 0.273015873015873, 0.2222222222222222, 0.17142857142857143, 0.16825396825396827, 0.15873015873015872, 0.15555555555555556, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1492063492063492, 0.1492063492063492, 0.1492063492063492, 0.1492063492063492, 0.1492063492063492, 0.1492063492063492, 0.1492063492063492, 0.1492063492063492, 0.13968253968253969, 0.13968253968253969, 0.13968253968253969, 0.1365079365079365, 0.1365079365079365, 0.2, 0.7142857142857143, 0.16507936507936508, 0.13968253968253969, 0.13968253968253969, 0.13968253968253969, 0.1365079365079365, 0.13015873015873017, 0.13015873015873017, 0.13015873015873017, 0.13333333333333333, 0.13015873015873017, 0.13015873015873017, 0.12380952380952381, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF947.gap.json b/pfam_gap_rates/DUF947.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b73547e6ad7b31f4d64db8c8657defc0d6796bd
--- /dev/null
+++ b/pfam_gap_rates/DUF947.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF948.gap.json b/pfam_gap_rates/DUF948.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f81c5d6202d73cae147b4ce2cb5c2851ccee1a9
--- /dev/null
+++ b/pfam_gap_rates/DUF948.gap.json
@@ -0,0 +1 @@
+{"family": "DUF948", "n_seqs": 395, "length": 96, "gap_rates": [0.23544303797468355, 0.09873417721518987, 0.08354430379746836, 0.060759493670886074, 0.053164556962025315, 0.04050632911392405, 0.0379746835443038, 0.027848101265822784, 0.02278481012658228, 0.015189873417721518, 0.005063291139240506, 0.007594936708860759, 0.007594936708860759, 0.005063291139240506, 0.002531645569620253, 0.002531645569620253, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8911392405063291, 0.8911392405063291, 0.8962025316455696, 0.8962025316455696, 0.8962025316455696, 0.8911392405063291, 0.8911392405063291, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002531645569620253, 0.002531645569620253, 0.002531645569620253, 0.002531645569620253, 0.002531645569620253, 0.002531645569620253, 0.002531645569620253, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2430379746835443, 0.24050632911392406, 0.2430379746835443, 0.2430379746835443, 0.2430379746835443, 0.2430379746835443, 0.24556962025316456, 0.007594936708860759, 0.005063291139240506, 0.005063291139240506, 0.005063291139240506, 0.005063291139240506, 0.005063291139240506, 0.005063291139240506, 0.005063291139240506, 0.007594936708860759, 0.007594936708860759, 0.015189873417721518, 0.017721518987341773, 0.02531645569620253, 0.04050632911392405, 0.05063291139240506, 0.053164556962025315, 0.06582278481012659, 0.07848101265822785, 0.08860759493670886, 0.09873417721518987, 0.11139240506329114, 0.12658227848101267, 0.21772151898734177, 0.8354430379746836], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF965.gap.json b/pfam_gap_rates/DUF965.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b41b2716b24f430b16e0a757bc8d18a99a40e35
--- /dev/null
+++ b/pfam_gap_rates/DUF965.gap.json
@@ -0,0 +1 @@
+{"family": "DUF965", "n_seqs": 561, "length": 79, "gap_rates": [0.31907308377896615, 0.06417112299465241, 0.0392156862745098, 0.026737967914438502, 0.024955436720142603, 0.024955436720142603, 0.024955436720142603, 0.023172905525846704, 0.0196078431372549, 0.0196078431372549, 0.016042780748663103, 0.016042780748663103, 0.82174688057041, 0.07130124777183601, 0.0071301247771836, 0.0035650623885918, 0.0035650623885918, 0.0017825311942959, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035650623885918, 0.0035650623885918, 0.012477718360071301, 0.43672014260249553], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF998.gap.json b/pfam_gap_rates/DUF998.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78612c939ca19f601efad54f1a98ab6a4a0c8e31
--- /dev/null
+++ b/pfam_gap_rates/DUF998.gap.json
@@ -0,0 +1 @@
+{"family": "DUF998", "n_seqs": 425, "length": 231, "gap_rates": [0.7717647058823529, 0.4470588235294118, 0.3341176470588235, 0.25176470588235295, 0.20705882352941177, 0.16705882352941176, 0.13647058823529412, 0.12941176470588237, 0.11294117647058824, 0.10588235294117647, 0.9364705882352942, 0.8588235294117647, 0.08941176470588236, 0.08235294117647059, 0.07764705882352942, 0.07529411764705882, 0.07058823529411765, 0.06823529411764706, 0.06823529411764706, 0.08235294117647059, 0.0611764705882353, 0.05411764705882353, 0.07764705882352942, 0.9364705882352942, 0.07058823529411765, 0.05176470588235294, 0.05176470588235294, 0.05411764705882353, 0.04470588235294118, 0.04, 0.03764705882352941, 0.03764705882352941, 0.03764705882352941, 0.03764705882352941, 0.03529411764705882, 0.03529411764705882, 0.3270588235294118, 0.35058823529411764, 0.8470588235294118, 0.8658823529411764, 0.8705882352941177, 0.9011764705882352, 0.92, 0.908235294117647, 0.8823529411764706, 0.8705882352941177, 0.8588235294117647, 0.7741176470588236, 0.03294117647058824, 0.02823529411764706, 0.02823529411764706, 0.02823529411764706, 0.02823529411764706, 0.02823529411764706, 0.03058823529411765, 0.02823529411764706, 0.02588235294117647, 0.02588235294117647, 0.02588235294117647, 0.021176470588235293, 0.021176470588235293, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.9223529411764706, 0.9458823529411765, 0.8941176470588236, 0.023529411764705882, 0.02588235294117647, 0.03529411764705882, 0.08705882352941176, 0.09647058823529411, 0.20470588235294118, 0.21411764705882352, 0.28941176470588237, 0.8023529411764706, 0.908235294117647, 0.9411764705882353, 0.8329411764705882, 0.5152941176470588, 0.09647058823529411, 0.07529411764705882, 0.03294117647058824, 0.03058823529411765, 0.021176470588235293, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.021176470588235293, 0.01647058823529412, 0.018823529411764704, 0.018823529411764704, 0.9388235294117647, 0.04470588235294118, 0.03058823529411765, 0.018823529411764704, 0.01411764705882353, 0.01647058823529412, 0.9176470588235294, 0.01647058823529412, 0.01647058823529412, 0.01647058823529412, 0.01647058823529412, 0.01647058823529412, 0.042352941176470586, 0.03294117647058824, 0.01411764705882353, 0.01411764705882353, 0.01411764705882353, 0.021176470588235293, 0.018823529411764704, 0.17411764705882352, 0.34352941176470586, 0.3388235294117647, 0.34823529411764703, 0.6823529411764706, 0.7694117647058824, 0.8023529411764706, 0.8305882352941176, 0.8635294117647059, 0.9011764705882352, 0.84, 0.8117647058823529, 0.7858823529411765, 0.7364705882352941, 0.6588235294117647, 0.35764705882352943, 0.32235294117647056, 0.30823529411764705, 0.2776470588235294, 0.20705882352941177, 0.01411764705882353, 0.01411764705882353, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.01647058823529412, 0.01647058823529412, 0.01411764705882353, 0.01411764705882353, 0.01411764705882353, 0.01411764705882353, 0.01411764705882353, 0.01647058823529412, 0.01647058823529412, 0.01411764705882353, 0.01411764705882353, 0.01411764705882353, 0.01411764705882353, 0.9364705882352942, 0.01647058823529412, 0.03294117647058824, 0.03058823529411765, 0.7505882352941177, 0.9152941176470588, 0.9341176470588235, 0.8352941176470589, 0.5811764705882353, 0.40941176470588236, 0.3270588235294118, 0.28, 0.2, 0.14588235294117646, 0.11294117647058824, 0.06823529411764706, 0.03058823529411765, 0.023529411764705882, 0.02588235294117647, 0.023529411764705882, 0.018823529411764704, 0.01647058823529412, 0.01647058823529412, 0.018823529411764704, 0.01647058823529412, 0.01647058823529412, 0.021176470588235293, 0.023529411764705882, 0.02588235294117647, 0.023529411764705882, 0.021176470588235293, 0.021176470588235293, 0.021176470588235293, 0.023529411764705882, 0.023529411764705882, 0.02823529411764706, 0.03058823529411765, 0.03764705882352941, 0.042352941176470586, 0.047058823529411764, 0.06823529411764706, 0.7505882352941177, 0.8188235294117647, 0.9270588235294117, 0.8423529411764706, 0.7811764705882352, 0.6870588235294117, 0.548235294117647, 0.37411764705882355, 0.2964705882352941, 0.24705882352941178, 0.15058823529411763, 0.09176470588235294, 0.07764705882352942, 0.058823529411764705, 0.04470588235294118, 0.04470588235294118, 0.03764705882352941, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.04941176470588235, 0.04941176470588235, 0.04941176470588235, 0.04941176470588235, 0.04941176470588235, 0.05411764705882353, 0.058823529411764705, 0.06352941176470588, 0.06823529411764706, 0.08705882352941176, 0.11764705882352941, 0.1388235294117647, 0.25176470588235295, 0.48705882352941177, 0.9388235294117647], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dak1.gap.json b/pfam_gap_rates/Dak1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50b55ee118c87f78648dc23b639e2778ceeafe6a
--- /dev/null
+++ b/pfam_gap_rates/Dak1.gap.json
@@ -0,0 +1 @@
+{"family": "Dak1", "n_seqs": 1147, "length": 350, "gap_rates": [0.6756756756756757, 0.2109851787271142, 0.18308631211857018, 0.17262423714036618, 0.16826503923278116, 0.15867480383609417, 0.15344376634699217, 0.14908456843940715, 0.14734088927637315, 0.5780296425457716, 0.13687881429816914, 0.14036617262423715, 0.13426329555361813, 0.12990409764603314, 0.14123801220575413, 0.12903225806451613, 0.9014821272885789, 0.14908456843940715, 0.12903225806451613, 0.09415867480383609, 0.09241499564080209, 0.09154315605928509, 0.08979947689625109, 0.2101133391455972, 0.93025283347864, 0.8727114210985178, 0.1926765475152572, 0.14908456843940715, 0.15780296425457715, 0.9267654751525719, 0.8892763731473409, 0.09154315605928509, 0.07846556233653008, 0.07846556233653008, 0.07846556233653008, 0.07846556233653008, 0.07846556233653008, 0.07846556233653008, 0.07759372275501308, 0.07672188317349608, 0.07497820401046207, 0.07497820401046207, 0.07410636442894507, 0.07323452484742807, 0.07236268526591107, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Dicty_CAR.gap.json b/pfam_gap_rates/Dicty_CAR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d889feb31c0c59ffa1d9d5993ca8fc49cd8c101
--- /dev/null
+++ b/pfam_gap_rates/Dicty_CAR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dicty_CTDC.gap.json b/pfam_gap_rates/Dicty_CTDC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e731b4557e05d2627985c2ea3b20701d5b0ada2b
--- /dev/null
+++ b/pfam_gap_rates/Dicty_CTDC.gap.json
@@ -0,0 +1 @@
+{"family": "Dicty_CTDC", "n_seqs": 512, "length": 26, "gap_rates": [0.05078125, 0.02734375, 0.005859375, 0.001953125, 0.001953125, 0.001953125, 0.001953125, 0.001953125, 0.00390625, 0.041015625, 0.01953125, 0.0859375, 0.0, 0.84765625, 0.0, 0.0, 0.0, 0.00390625, 0.005859375, 0.009765625, 0.943359375, 0.04296875, 0.052734375, 0.126953125, 0.205078125, 0.41796875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Disulph_isomer.gap.json b/pfam_gap_rates/Disulph_isomer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d6c0eaf2eb4ba9d5d0e85427c9fd275291b126a
--- /dev/null
+++ b/pfam_gap_rates/Disulph_isomer.gap.json
@@ -0,0 +1 @@
+{"family": "Disulph_isomer", "n_seqs": 264, "length": 138, "gap_rates": [0.10984848484848485, 0.06060606060606061, 0.04924242424242424, 0.04924242424242424, 0.03409090909090909, 0.03409090909090909, 0.030303030303030304, 0.026515151515151516, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.9356060606060606, 0.4810606060606061, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.015151515151515152, 0.011363636363636364, 0.7159090909090909, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.0, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.030303030303030304, 0.003787878787878788, 0.007575757575757576, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.01893939393939394, 0.03787878787878788, 0.08333333333333333, 0.12121212121212122], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DivIVA.gap.json b/pfam_gap_rates/DivIVA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2cde04433d7620feb051e6104664d8f80ae66116
--- /dev/null
+++ b/pfam_gap_rates/DivIVA.gap.json
@@ -0,0 +1 @@
+{"family": "DivIVA", "n_seqs": 1168, "length": 146, "gap_rates": [0.3193493150684932, 0.2243150684931507, 0.18664383561643835, 0.17123287671232876, 0.16523972602739725, 0.1601027397260274, 0.1506849315068493, 0.13527397260273974, 0.11472602739726027, 0.08904109589041095, 0.0779109589041096, 0.07705479452054795, 0.07705479452054795, 0.07448630136986302, 0.06763698630136987, 0.9289383561643836, 0.9366438356164384, 0.8818493150684932, 0.07191780821917808, 0.8142123287671232, 0.06592465753424658, 0.0642123287671233, 0.0642123287671233, 0.0642123287671233, 0.06164383561643835, 0.06078767123287671, 0.06078767123287671, 0.06164383561643835, 0.06164383561643835, 0.06335616438356165, 0.06335616438356165, 0.06164383561643835, 0.0625, 0.06164383561643835, 0.06335616438356165, 0.06078767123287671, 0.059931506849315065, 0.059931506849315065, 0.059931506849315065, 0.059931506849315065, 0.05650684931506849, 0.05565068493150685, 0.05565068493150685, 0.0547945205479452, 0.0547945205479452, 0.04965753424657534, 0.04965753424657534, 0.04708904109589041, 0.04794520547945205, 0.0488013698630137, 0.052226027397260275, 0.05136986301369863, 0.052226027397260275, 0.06164383561643835, 0.07448630136986302, 0.08133561643835617, 0.09674657534246575, 0.11215753424657535, 0.12243150684931507, 0.125, 0.136986301369863, 0.14897260273972604, 0.16352739726027396, 0.19434931506849315, 0.24486301369863014, 0.2988013698630137, 0.3202054794520548, 0.3339041095890411, 0.3681506849315068, 0.3672945205479452, 0.3715753424657534, 0.3792808219178082, 0.3818493150684932, 0.3784246575342466, 0.3732876712328767, 0.3690068493150685, 0.3715753424657534, 0.3741438356164384, 0.3741438356164384, 0.3732876712328767, 0.3784246575342466, 0.3801369863013699, 0.3818493150684932, 0.3835616438356164, 0.3844178082191781, 0.3878424657534247, 0.3895547945205479, 0.3895547945205479, 0.3929794520547945, 0.3964041095890411, 0.3946917808219178, 0.3955479452054795, 0.3998287671232877, 0.3998287671232877, 0.3998287671232877, 0.398972602739726, 0.3972602739726027, 0.3972602739726027, 0.3998287671232877, 0.4023972602739726, 0.4023972602739726, 0.4023972602739726, 0.4049657534246575, 0.4058219178082192, 0.410958904109589, 0.4143835616438356, 0.4152397260273973, 0.9332191780821918, 0.9357876712328768, 0.9383561643835616, 0.940068493150685, 0.9409246575342466, 0.9417808219178082, 0.940068493150685, 0.9383561643835616, 0.9375, 0.9332191780821918, 0.9332191780821918, 0.4169520547945205, 0.4160958904109589, 0.4160958904109589, 0.4169520547945205, 0.4169520547945205, 0.4178082191780822, 0.4203767123287671, 0.4220890410958904, 0.4332191780821918, 0.4392123287671233, 0.4511986301369863, 0.4563356164383562, 0.4700342465753425, 0.4854452054794521, 0.5008561643835616, 0.5111301369863014, 0.5205479452054794, 0.5248287671232876, 0.5291095890410958, 0.5428082191780822, 0.5556506849315068, 0.5667808219178082, 0.5761986301369864, 0.583904109589041, 0.5941780821917808, 0.6061643835616438, 0.6438356164383562, 0.740582191780822], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DnaI_N.gap.json b/pfam_gap_rates/DnaI_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61198ad76911cc3eb01d1e5beb6a0a5b1487f1b7
--- /dev/null
+++ b/pfam_gap_rates/DnaI_N.gap.json
@@ -0,0 +1 @@
+{"family": "DnaI_N", "n_seqs": 207, "length": 99, "gap_rates": [0.11594202898550725, 0.08695652173913043, 0.07729468599033816, 0.07246376811594203, 0.06280193236714976, 0.06280193236714976, 0.06280193236714976, 0.04830917874396135, 0.04830917874396135, 0.05314009661835749, 0.927536231884058, 0.2222222222222222, 0.12077294685990338, 0.08695652173913043, 0.05314009661835749, 0.03864734299516908, 0.03864734299516908, 0.03864734299516908, 0.043478260869565216, 0.028985507246376812, 0.024154589371980676, 0.01932367149758454, 0.00966183574879227, 0.00966183574879227, 0.004830917874396135, 0.00966183574879227, 0.00966183574879227, 0.014492753623188406, 0.014492753623188406, 0.004830917874396135, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.11594202898550725, 0.3671497584541063, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4927536231884058, 0.5072463768115942, 0.4927536231884058, 0.48792270531400966, 0.391304347826087, 0.04830917874396135, 0.03864734299516908, 0.043478260869565216, 0.03864734299516908, 0.00966183574879227, 0.00966183574879227, 0.004830917874396135, 0.00966183574879227, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.00966183574879227, 0.024154589371980676, 0.028985507246376812, 0.05314009661835749, 0.11594202898550725, 0.13043478260869565, 0.13526570048309178, 0.15458937198067632, 0.15942028985507245, 0.16908212560386474, 0.18840579710144928], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DnaJ_CXXCXGXG.gap.json b/pfam_gap_rates/DnaJ_CXXCXGXG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f58d9c6358147617a554c9907a6688676b01575
--- /dev/null
+++ b/pfam_gap_rates/DnaJ_CXXCXGXG.gap.json
@@ -0,0 +1 @@
+{"family": "DnaJ_CXXCXGXG", "n_seqs": 3500, "length": 72, "gap_rates": [0.019714285714285715, 0.019714285714285715, 0.018857142857142857, 0.018857142857142857, 0.018571428571428572, 0.01742857142857143, 0.01685714285714286, 0.015714285714285715, 0.015428571428571429, 0.04371428571428571, 0.04257142857142857, 0.9068571428571428, 0.014285714285714285, 0.005714285714285714, 0.3314285714285714, 0.0017142857142857142, 0.0017142857142857142, 0.0014285714285714286, 0.0005714285714285715, 0.0005714285714285715, 0.0005714285714285715, 0.0005714285714285715, 0.0005714285714285715, 0.0005714285714285715, 0.0005714285714285715, 0.0005714285714285715, 0.8151428571428572, 0.0008571428571428571, 0.010285714285714285, 0.012571428571428572, 0.012285714285714285, 0.011428571428571429, 0.038285714285714284, 0.5488571428571428, 0.5637142857142857, 0.6214285714285714, 0.26371428571428573, 0.024857142857142855, 0.039714285714285716, 0.8134285714285714, 0.12057142857142857, 0.2654285714285714, 0.6068571428571429, 0.412, 0.006285714285714286, 0.00028571428571428574, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00028571428571428574, 0.0, 0.0, 0.00028571428571428574, 0.0014285714285714286, 0.0025714285714285713, 0.7551428571428571, 0.7531428571428571, 0.023428571428571427, 0.012857142857142857, 0.012571428571428572, 0.012285714285714285, 0.012285714285714285, 0.012857142857142857, 0.012857142857142857, 0.013142857142857144, 0.014285714285714285, 0.02542857142857143, 0.13885714285714285], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dor1.gap.json b/pfam_gap_rates/Dor1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb9084eacff5f27fe1a9de396ee5afb166b04a0f
--- /dev/null
+++ b/pfam_gap_rates/Dor1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DoxX_3.gap.json b/pfam_gap_rates/DoxX_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20296555356cea78bf47688664ad7dff50177bb7
--- /dev/null
+++ b/pfam_gap_rates/DoxX_3.gap.json
@@ -0,0 +1 @@
+{"family": "DoxX_3", "n_seqs": 134, "length": 104, "gap_rates": [0.4925373134328358, 0.05223880597014925, 0.03731343283582089, 0.03731343283582089, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.22388059701492538, 0.07462686567164178, 0.022388059701492536, 0.029850746268656716, 0.05223880597014925, 0.029850746268656716, 0.06716417910447761, 0.03731343283582089, 0.022388059701492536, 0.05223880597014925, 0.022388059701492536, 0.014925373134328358, 0.014925373134328358, 0.029850746268656716, 0.15671641791044777, 0.917910447761194, 0.014925373134328358, 0.03731343283582089, 0.029850746268656716, 0.05223880597014925, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.11194029850746269, 0.007462686567164179, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.917910447761194, 0.0, 0.0, 0.0, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.014925373134328358, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.04477611940298507, 0.06716417910447761, 0.11194029850746269, 0.582089552238806], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DsbD.gap.json b/pfam_gap_rates/DsbD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c730ec5bd70b5b0901d45cd741e9d1a7d05cb956
--- /dev/null
+++ b/pfam_gap_rates/DsbD.gap.json
@@ -0,0 +1 @@
+{"family": "DsbD", "n_seqs": 2413, "length": 234, "gap_rates": [0.563613758806465, 0.1819312059676751, 0.10360547036883548, 0.07956900124326564, 0.059676750932449237, 0.05677579776212184, 0.055532532117695814, 0.05428926647326979, 0.052217157065893076, 0.05180273518441774, 0.05180273518441774, 0.0513883133029424, 0.050973891421467056, 0.050973891421467056, 0.05014504765851637, 0.04973062577704103, 0.04973062577704103, 0.050559469539991714, 0.053874844591794445, 0.055532532117695814, 0.059676750932449237, 0.06382096974720265, 0.07003729796933278, 0.0841276419394944, 0.08827186075424782, 0.08910070451719851, 0.23663489432242021, 0.24865312888520513, 0.23290509738914214, 0.24450891007045172, 0.20638209697472026, 0.20389556568586822, 0.1968503937007874, 0.15789473684210525, 0.1682552838789888, 0.3493576460837132, 0.9341069208454207, 0.886033982594281, 0.5271446332366349, 0.44633236634894324, 0.3995026937422296, 0.3945296311645255, 0.8205553253211769, 0.9270617488603399, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Dynein_light.gap.json b/pfam_gap_rates/Dynein_light.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09edd10ceb9d8e1c4ea4bab14ff36ecc049800c3
--- /dev/null
+++ b/pfam_gap_rates/Dynein_light.gap.json
@@ -0,0 +1 @@
+{"family": "Dynein_light", "n_seqs": 1433, "length": 92, "gap_rates": [0.6727145847871598, 0.34891835310537334, 0.24563852058618282, 0.21284019539427773, 0.18143754361479414, 0.1584089323098395, 0.1374738311235171, 0.12212142358688068, 0.08653175157013258, 0.08164689462665736, 0.07536636427076064, 0.0718771807397069, 0.0628053035589672, 0.05303558967201675, 0.04745289602233078, 0.045359385903698535, 0.04326587578506629, 0.044661549197487785, 0.04396371249127704, 0.04256803907885555, 0.041172365666434056, 0.041172365666434056, 0.03977669225401256, 0.03558967201674808, 0.03279832519190509, 0.03210048848569435, 0.03349616189811584, 0.09769713886950454, 0.08164689462665736, 0.05024424284717376, 0.10537334263782275, 0.11165387299371947, 0.64480111653873, 0.8988136775994418, 0.9455687369155618, 0.9232379623168179, 0.8709002093510119, 0.5471039776692254, 0.0209351011863224, 0.017445917655268667, 0.015352407536636426, 0.013956734124214934, 0.013956734124214934, 0.013258897418004187, 0.0104675505931612, 0.009071877180739707, 0.009071877180739707, 0.00837404047452896, 0.011863224005582694, 0.011863224005582694, 0.013956734124214934, 0.018143754361479414, 0.013956734124214934, 0.01465457083042568, 0.015352407536636426, 0.016050244242847175, 0.01674808094905792, 0.01884159106769016, 0.01884159106769016, 0.01884159106769016, 0.889741800418702, 0.020237264480111653, 0.022330774598743892, 0.024424284717376135, 0.024424284717376135, 0.02512212142358688, 0.04256803907885555, 0.04815073272854152, 0.05373342637822749, 0.0642009769713887, 0.06769016050244243, 0.06838799720865317, 0.08932309839497557, 0.08862526168876483, 0.07815771109560363, 0.08025122121423586, 0.08164689462665736, 0.08234473133286811, 0.08234473133286811, 0.08722958827634333, 0.08722958827634333, 0.09002093510118632, 0.9211444521981856, 0.0942079553384508, 0.09630146545708304, 0.104675505931612, 0.10956036287508723, 0.1137473831123517, 0.11584089323098395, 0.12002791346824843, 0.13956734124214934, 0.39218422889043963], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF1G.gap.json b/pfam_gap_rates/EF1G.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bbab41e3830dfdd99e559a651c9005f7573c8ba4
--- /dev/null
+++ b/pfam_gap_rates/EF1G.gap.json
@@ -0,0 +1 @@
+{"family": "EF1G", "n_seqs": 405, "length": 114, "gap_rates": [0.2222222222222222, 0.17037037037037037, 0.12839506172839507, 0.1111111111111111, 0.10617283950617284, 0.09876543209876543, 0.08888888888888889, 0.08888888888888889, 0.08641975308641975, 0.07901234567901234, 0.07654320987654321, 0.06172839506172839, 0.05432098765432099, 0.05185185185185185, 0.044444444444444446, 0.04197530864197531, 0.04197530864197531, 0.04197530864197531, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.2938271604938272, 0.8419753086419753, 0.8271604938271605, 0.04938271604938271, 0.04938271604938271, 0.9135802469135802, 0.8888888888888888, 0.04197530864197531, 0.04197530864197531, 0.04197530864197531, 0.04197530864197531, 0.04197530864197531, 0.044444444444444446, 0.044444444444444446, 0.04691358024691358, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.04938271604938271, 0.04691358024691358, 0.04691358024691358, 0.04691358024691358, 0.04691358024691358, 0.04691358024691358, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.9209876543209876, 0.04691358024691358, 0.04691358024691358, 0.04938271604938271, 0.04691358024691358, 0.05185185185185185, 0.04197530864197531, 0.03950617283950617, 0.04197530864197531, 0.03950617283950617, 0.0345679012345679, 0.024691358024691357, 0.024691358024691357, 0.027160493827160494, 0.027160493827160494, 0.027160493827160494, 0.02962962962962963, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.037037037037037035, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.9382716049382716, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.04197530864197531, 0.04197530864197531, 0.04197530864197531, 0.04197530864197531, 0.04197530864197531, 0.04197530864197531, 0.044444444444444446, 0.044444444444444446, 0.04691358024691358, 0.05185185185185185, 0.05185185185185185, 0.05432098765432099, 0.05432098765432099, 0.9481481481481482, 0.05432098765432099, 0.05432098765432099, 0.05925925925925926, 0.05432098765432099, 0.056790123456790124, 0.056790123456790124, 0.056790123456790124, 0.06666666666666667, 0.07160493827160494, 0.07160493827160494, 0.07654320987654321, 0.07654320987654321, 0.09382716049382717, 0.3160493827160494], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EFG_II.gap.json b/pfam_gap_rates/EFG_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d95d367866648234cff3ba26fd437aa129509514
--- /dev/null
+++ b/pfam_gap_rates/EFG_II.gap.json
@@ -0,0 +1 @@
+{"family": "EFG_II", "n_seqs": 5000, "length": 75, "gap_rates": [0.389, 0.296, 0.1858, 0.0828, 0.0756, 0.073, 0.0716, 0.07, 0.0694, 0.0684, 0.0658, 0.0648, 0.0672, 0.0654, 0.066, 0.0674, 0.0564, 0.0304, 0.0154, 0.01, 0.0076, 0.0076, 0.0056, 0.0054, 0.0046, 0.0042, 0.0034, 0.0032, 0.0026, 0.0024, 0.002, 0.0022, 0.0018, 0.0108, 0.0022, 0.018, 0.01, 0.024, 0.0272, 0.1044, 0.0154, 0.0116, 0.0108, 0.0038, 0.0034, 0.0024, 0.0034, 0.0036, 0.0034, 0.0034, 0.0032, 0.0032, 0.0032, 0.0032, 0.0032, 0.0032, 0.0038, 0.0042, 0.0044, 0.005, 0.005, 0.0052, 0.0056, 0.0058, 0.0078, 0.0112, 0.094, 0.1506, 0.1788, 0.1842, 0.1932, 0.2114, 0.2496, 0.3736, 0.7924], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EFP.gap.json b/pfam_gap_rates/EFP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..325cb92358228f7131a2399b336c77bc29ae6e44
--- /dev/null
+++ b/pfam_gap_rates/EFP.gap.json
@@ -0,0 +1 @@
+{"family": "EFP", "n_seqs": 2465, "length": 55, "gap_rates": [0.3310344827586207, 0.08681541582150101, 0.032454361054766734, 0.011359026369168357, 0.008519269776876268, 0.008519269776876268, 0.008519269776876268, 0.008113590263691683, 0.007707910750507099, 0.011359026369168357, 0.007707910750507099, 0.006085192697768763, 0.006085192697768763, 0.006085192697768763, 0.006085192697768763, 0.002839756592292089, 0.002434077079107505, 0.044219066937119675, 0.01460446247464503, 0.002839756592292089, 0.002839756592292089, 0.002028397565922921, 0.002028397565922921, 0.00040567951318458417, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008113590263691683, 0.0016227180527383367, 0.06369168356997972, 0.005273833671399594, 0.004056795131845842, 0.002434077079107505, 0.002434077079107505, 0.002839756592292089, 0.002839756592292089, 0.0032454361054766734, 0.0036511156186612576, 0.0036511156186612576, 0.0036511156186612576, 0.0036511156186612576, 0.9452332657200812, 0.004056795131845842, 0.005273833671399594, 0.005273833671399594, 0.006085192697768763, 0.006896551724137931, 0.03772819472616633, 0.046247464503042596, 0.0563894523326572, 0.08397565922920892, 0.13955375253549696, 0.3691683569979716], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EII-Sor.gap.json b/pfam_gap_rates/EII-Sor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92ea91c949cab480c58330b3619877f89724ecf9
--- /dev/null
+++ b/pfam_gap_rates/EII-Sor.gap.json
@@ -0,0 +1 @@
+{"family": "EII-Sor", "n_seqs": 751, "length": 263, "gap_rates": [0.5565912117177098, 0.17976031957390146, 0.1118508655126498, 0.07456724367509987, 0.06125166444740346, 0.0559254327563249, 0.05059920106524634, 0.0492676431424767, 0.045272969374167776, 0.041278295605858856, 0.041278295605858856, 0.03861517976031957, 0.03861517976031957, 0.037283621837549935, 0.9374167776298269, 0.9414114513981359, 0.9227696404793608, 0.041278295605858856, 0.0559254327563249, 0.033288948069241014, 0.03195739014647137, 0.9320905459387483, 0.715046604527297, 0.03595206391478029, 0.03195739014647137, 0.037283621837549935, 0.02796271637816245, 0.02663115845539281, 0.02529960053262317, 0.02529960053262317, 0.02529960053262317, 0.02529960053262317, 0.02529960053262317, 0.02529960053262317, 0.02529960053262317, 0.023968042609853527, 0.023968042609853527, 0.023968042609853527, 0.022636484687083888, 0.022636484687083888, 0.022636484687083888, 0.022636484687083888, 0.022636484687083888, 0.018641810918774968, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ELFV_dehydrog.gap.json b/pfam_gap_rates/ELFV_dehydrog.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e27722473098fadeb7335e6d62d5b53efa5633a3
--- /dev/null
+++ b/pfam_gap_rates/ELFV_dehydrog.gap.json
@@ -0,0 +1 @@
+{"family": "ELFV_dehydrog", "n_seqs": 3636, "length": 289, "gap_rates": [0.31518151815181517, 0.26347634763476346, 0.261001100110011, 0.9287678767876788, 0.25797579757975797, 0.2546754675467547, 0.25055005500550054, 0.2466996699669967, 0.21672167216721672, 0.19884488448844884, 0.19471947194719472, 0.1936193619361936, 0.1927942794279428, 0.19224422442244224, 0.19224422442244224, 0.1916941694169417, 0.19141914191419143, 0.1916941694169417, 0.19086908690869087, 0.19031903190319033, 0.18921892189218922, 0.18811881188118812, 0.18784378437843785, 0.18756875687568758, 0.18756875687568758, 0.43454345434543457, 0.1927942794279428, 0.19416941694169418, 0.19141914191419143, 0.8968646864686468, 0.9207920792079208, 0.9232673267326733, 0.9240924092409241, 0.9216171617161716, 0.9147414741474147, 0.8487348734873488, 0.485973597359736, 0.19994499449944994, 0.18316831683168316, 0.18124312431243125, 0.18206820682068206, 0.17684268426842684, 0.17381738173817382, 0.17326732673267325, 0.17216721672167218, 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\ No newline at end of file
diff --git a/pfam_gap_rates/EMP70.gap.json b/pfam_gap_rates/EMP70.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d1c7d0f707825245f89ec71a092e3a9c52861c9
--- /dev/null
+++ b/pfam_gap_rates/EMP70.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ERCC4.gap.json b/pfam_gap_rates/ERCC4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79838aa18f6a25fe321f40c1982f02f22c563c5a
--- /dev/null
+++ b/pfam_gap_rates/ERCC4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ETF.gap.json b/pfam_gap_rates/ETF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b857831c85916996c84002b66dfa8e83b16cc80
--- /dev/null
+++ b/pfam_gap_rates/ETF.gap.json
@@ -0,0 +1 @@
+{"family": "ETF", "n_seqs": 4478, "length": 204, "gap_rates": [0.756811076373381, 0.48503796337650734, 0.37561411344350154, 0.26418043769539973, 0.23805270209915141, 0.21527467619472979, 0.15297007592675302, 0.17909781152300133, 0.47409557838320676, 0.08619919606967397, 0.07615006699419384, 0.06922733363108531, 0.06543099598034836, 0.062304600267976774, 0.05582849486377847, 0.05158552925413131, 0.04756587762393926, 0.04332291201429209, 0.04086645824028584, 0.040419830281375614, 0.03974988834301027, 0.03974988834301027, 0.03997320232246539, 0.03707012058954891, 0.03684680661009379, 0.03506029477445288, 0.03528360875390799, 0.24497543546225994, 0.24832514515408666, 0.3003573023671282, 0.9481911567664135, 0.8610987047789191, 0.28584189370254576, 0.12393925859758821, 0.8079499776686021, 0.03595355069227334, 0.03126395712371594, 0.030817329164805715, 0.030147387226440375, 0.030147387226440375, 0.030370701205895488, 0.030147387226440375, 0.03126395712371594, 0.030147387226440375, 0.02925413130861992, 0.26239392585975885, 0.21125502456453774, 0.12974542206342116, 0.13778472532380526, 0.05917820455560518, 0.06699419383653417, 0.9347923179991068, 0.8986154533273782, 0.22242072353729345, 0.04756587762393926, 0.03148727110317106, 0.028807503349709693, 0.027244305493523895, 0.02746761947297901, 0.584412684234033, 0.028584189370254576, 0.025681107637338097, 0.02523447967842787, 0.02657436355515855, 0.023894595801697185, 0.022331397945511387, 0.021661456007146047, 0.021438142027690933, 0.02188476998660116, 0.02456453774006253, 0.024341223760607412, 0.0241179097811523, 0.026797677534613668, 0.03528360875390799, 0.06342117016525234, 0.19205002233139795, 0.16971862438588656, 0.03974988834301027, 0.03148727110317106, 0.030817329164805715, 0.024787851719517643, 0.024341223760607412, 0.019874944171505135, 0.01786511835640911, 0.016971862438588656, 0.016301920500223315, 0.015855292541313085, 0.015855292541313085, 0.01652523447967843, 0.016748548459133542, 0.0160786065207682, 0.01652523447967843, 0.12818222420723538, 0.9227333631085306, 0.9468512728896828, 0.9390352836087539, 0.8077266636891469, 0.12103617686467173, 0.01719517641804377, 0.01496203662349263, 0.01496203662349263, 0.015185350602947744, 0.014515408664582403, 0.013175524787851719, 0.013175524787851719, 0.013398838767306834, 0.013622152746761948, 0.013398838767306834, 0.013845466726217061, 0.5361768646717284, 0.014515408664582403, 0.5087092451987495, 0.5029030817329165, 0.014068780705672175, 0.014515408664582403, 0.014515408664582403, 0.014515408664582403, 0.014515408664582403, 0.014068780705672175, 0.014068780705672175, 0.013845466726217061, 0.013845466726217061, 0.013845466726217061, 0.014068780705672175, 0.013845466726217061, 0.014068780705672175, 0.013845466726217061, 0.013845466726217061, 0.013622152746761948, 0.013622152746761948, 0.013845466726217061, 0.014068780705672175, 0.014068780705672175, 0.014068780705672175, 0.013622152746761948, 0.013845466726217061, 0.013845466726217061, 0.9401518535060295, 0.014292094685127288, 0.251004912907548, 0.05739169271996427, 0.22152746761947298, 0.8231353282715498, 0.9497543546225994, 0.9305493523894596, 0.7396158999553372, 0.21103171058508263, 0.018758374274229567, 0.015185350602947744, 0.014738722644037517, 0.014738722644037517, 0.014515408664582403, 0.014515408664582403, 0.014515408664582403, 0.014738722644037517, 0.5082626172398392, 0.5069227333631086, 0.022554711924966504, 0.018758374274229567, 0.47409557838320676, 0.024341223760607412, 0.029030817329164807, 0.02054488610987048, 0.020321572130415366, 0.024341223760607412, 0.8081732916480572, 0.023671281822242072, 0.01965163019205002, 0.019428316212594908, 0.019874944171505135, 0.020321572130415366, 0.020321572130415366, 0.020991514068780706, 0.021661456007146047, 0.022108083966056274, 0.022554711924966504, 0.026127735596248324, 0.02590442161679321, 0.027020991514068782, 0.02925413130861992, 0.029030817329164807, 0.5082626172398392, 0.5323805270209915, 0.5361768646717284, 0.5252344796784278, 0.4964269763287182, 0.08597588209021885, 0.13130861991960696, 0.14649397052255472, 0.15096025011165698, 0.10786065207682001, 0.1514068780705672, 0.11545332737829388, 0.11969629298794104, 0.12438588655649843, 0.12818222420723538, 0.13622152746761948, 0.1496203662349263, 0.17775792764627066, 0.2090218847699866, 0.2518981688253685, 0.3376507369361322, 0.4673961589995534, 0.6418043769539973], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ETF_QO.gap.json b/pfam_gap_rates/ETF_QO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e33c4d2d7c3bbc6e21514f69ad722357fb7ecdf
--- /dev/null
+++ b/pfam_gap_rates/ETF_QO.gap.json
@@ -0,0 +1 @@
+{"family": "ETF_QO", "n_seqs": 919, "length": 107, "gap_rates": [0.31991294885745375, 0.23721436343852012, 0.20130576713819368, 0.19804134929270947, 0.1882480957562568, 0.18171926006528835, 0.18171926006528835, 0.18171926006528835, 0.18171926006528835, 0.18171926006528835, 0.18063112078346028, 0.18063112078346028, 0.17736670293797607, 0.176278563656148, 0.17519042437431992, 0.17301414581066377, 0.16757344940152338, 0.14472252448313383, 0.13275299238302501, 0.12078346028291621, 0.10228509249183895, 0.10119695321001088, 0.09466811751904244, 0.09249183895538629, 0.09249183895538629, 0.08922742110990206, 0.088139281828074, 0.09031556039173014, 0.088139281828074, 0.9281828073993471, 0.9227421109902068, 0.08922742110990206, 0.09140369967355821, 0.09140369967355821, 0.09466811751904244, 0.09031556039173014, 0.09249183895538629, 0.09031556039173014, 0.09249183895538629, 0.09140369967355821, 0.09466811751904244, 0.09793253536452666, 0.13710554951033732, 0.13492927094668117, 0.11969532100108814, 0.07399347116430903, 0.07072905331882481, 0.04787812840043525, 0.03264417845484222, 0.023939064200217627, 0.023939064200217627, 0.022850924918389554, 0.022850924918389554, 0.022850924918389554, 0.02176278563656148, 0.02720348204570185, 0.031556039173014146, 0.031556039173014146, 0.03482045701849837, 0.035908596300326445, 0.05984766050054407, 0.07181719260065289, 0.10772578890097932, 0.8291621327529923, 0.45701849836779107, 0.5745375408052231, 0.21436343852013057, 0.17736670293797607, 0.14145810663764963, 0.058759521218716, 0.03808487486398259, 0.03808487486398259, 0.036996735582154515, 0.03373231773667029, 0.035908596300326445, 0.03482045701849837, 0.042437431991294884, 0.04352557127312296, 0.04352557127312296, 0.04352557127312296, 0.04570184983677911, 0.046789989118607184, 0.046789989118607184, 0.046789989118607184, 0.046789989118607184, 0.04787812840043525, 0.04787812840043525, 0.05331882480957562, 0.0544069640914037, 0.058759521218716, 0.056583242655059846, 0.05767138193688792, 0.05767138193688792, 0.05005440696409141, 0.051142546245919476, 0.0544069640914037, 0.0544069640914037, 0.0544069640914037, 0.055495103373231776, 0.055495103373231776, 0.056583242655059846, 0.05984766050054407, 0.058759521218716, 0.11099020674646355, 0.13601741022850924, 0.1512513601741023, 0.6605005440696409], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ecm29.gap.json b/pfam_gap_rates/Ecm29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2e88aabbc1db8c443945f99bb3ae8c8f06b5e15
--- /dev/null
+++ b/pfam_gap_rates/Ecm29.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EcoEI_R_C.gap.json b/pfam_gap_rates/EcoEI_R_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbbd108bf2a7f6503919f8b0355f556307fdc929
--- /dev/null
+++ b/pfam_gap_rates/EcoEI_R_C.gap.json
@@ -0,0 +1 @@
+{"family": "EcoEI_R_C", "n_seqs": 510, "length": 193, "gap_rates": [0.596078431372549, 0.24705882352941178, 0.13725490196078433, 0.10784313725490197, 0.09019607843137255, 0.08235294117647059, 0.06666666666666667, 0.060784313725490195, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.056862745098039215, 0.054901960784313725, 0.24705882352941178, 0.060784313725490195, 0.054901960784313725, 0.052941176470588235, 0.052941176470588235, 0.06862745098039216, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.050980392156862744, 0.050980392156862744, 0.050980392156862744, 0.8588235294117647, 0.907843137254902, 0.888235294117647, 0.7274509803921568, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.045098039215686274, 0.045098039215686274, 0.045098039215686274, 0.045098039215686274, 0.045098039215686274, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.4137254901960784, 0.4137254901960784, 0.43333333333333335, 0.4215686274509804, 0.7294117647058823, 0.6941176470588235, 0.047058823529411764, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.03529411764705882, 0.054901960784313725, 0.050980392156862744, 0.06862745098039216, 0.5294117647058824, 0.5392156862745098, 0.7176470588235294, 0.6764705882352942, 0.6784313725490196, 0.8960784313725491, 0.9450980392156862, 0.9254901960784314, 0.8705882352941177, 0.7549019607843137, 0.7529411764705882, 0.6411764705882353, 0.7901960784313725, 0.7411764705882353, 0.6411764705882353, 0.4823529411764706, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.47843137254901963, 0.36470588235294116, 0.28431372549019607, 0.2823529411764706, 0.2823529411764706, 0.2823529411764706, 0.2823529411764706, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.013725490196078431, 0.00980392156862745, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.050980392156862744, 0.06862745098039216, 0.24705882352941178, 0.21568627450980393, 0.20588235294117646, 0.8215686274509804, 0.8745098039215686, 0.8823529411764706, 0.8666666666666667, 0.7725490196078432, 0.052941176470588235, 0.047058823529411764, 0.00980392156862745, 0.8980392156862745, 0.903921568627451, 0.8980392156862745, 0.8803921568627451, 0.011764705882352941, 0.00784313725490196, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.6098039215686275, 0.9333333333333333, 0.5254901960784314, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.01568627450980392, 0.013725490196078431, 0.01568627450980392, 0.029411764705882353, 0.6019607843137255, 0.03137254901960784, 0.023529411764705882, 0.027450980392156862, 0.043137254901960784, 0.14313725490196078, 0.058823529411764705, 0.03529411764705882, 0.041176470588235294, 0.11372549019607843, 0.07058823529411765, 0.19411764705882353, 0.07058823529411765, 0.07058823529411765, 0.06666666666666667, 0.16470588235294117, 0.08823529411764706, 0.4392156862745098, 0.9450980392156862, 0.3607843137254902, 0.08823529411764706, 0.09019607843137255, 0.09411764705882353, 0.10196078431372549, 0.10196078431372549, 0.10196078431372549, 0.11764705882352941, 0.16862745098039217, 0.1803921568627451, 0.21372549019607842, 0.2901960784313726, 0.36666666666666664, 0.3980392156862745, 0.5745098039215686], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Elicitin.gap.json b/pfam_gap_rates/Elicitin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a76e76a04180061cdc004be500155fce209a1d1b
--- /dev/null
+++ b/pfam_gap_rates/Elicitin.gap.json
@@ -0,0 +1 @@
+{"family": "Elicitin", "n_seqs": 136, "length": 105, "gap_rates": [0.6470588235294118, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.1323529411764706, 0.8823529411764706, 0.8823529411764706, 0.875, 0.4632352941176471, 0.3235294117647059, 0.3088235294117647, 0.3088235294117647, 0.09558823529411764, 0.08823529411764706, 0.07352941176470588, 0.07352941176470588, 0.9117647058823529, 0.11764705882352941, 0.10294117647058823, 0.051470588235294115, 0.04411764705882353, 0.03676470588235294, 0.9411764705882353, 0.07352941176470588, 0.0661764705882353, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.029411764705882353, 0.9264705882352942, 0.029411764705882353, 0.022058823529411766, 0.022058823529411766, 0.8014705882352942, 0.9338235294117647, 0.9044117647058824, 0.7352941176470589, 0.07352941176470588, 0.03676470588235294, 0.029411764705882353, 0.11764705882352941, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.0, 0.0, 0.022058823529411766, 0.022058823529411766, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9191176470588235, 0.007352941176470588, 0.029411764705882353, 0.04411764705882353, 0.8235294117647058, 0.9338235294117647, 0.8014705882352942, 0.04411764705882353, 0.022058823529411766, 0.007352941176470588, 0.014705882352941176, 0.014705882352941176, 0.029411764705882353, 0.2647058823529412, 0.3602941176470588, 0.8602941176470589, 0.8382352941176471, 0.35294117647058826, 0.22058823529411764, 0.22058823529411764, 0.21323529411764705, 0.21323529411764705, 0.2426470588235294, 0.2426470588235294, 0.2426470588235294, 0.2426470588235294, 0.25735294117647056, 0.2647058823529412, 0.27941176470588236, 0.29411764705882354, 0.3014705882352941, 0.3382352941176471, 0.35294117647058826, 0.3602941176470588, 0.3602941176470588], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Enkurin.gap.json b/pfam_gap_rates/Enkurin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17bcb5c0027fd73a93fc5543f3ac20e50eb0bab3
--- /dev/null
+++ b/pfam_gap_rates/Enkurin.gap.json
@@ -0,0 +1 @@
+{"family": "Enkurin", "n_seqs": 274, "length": 107, "gap_rates": [0.1386861313868613, 0.12408759124087591, 0.10583941605839416, 0.10583941605839416, 0.10583941605839416, 0.10218978102189781, 0.10218978102189781, 0.09854014598540146, 0.09854014598540146, 0.09124087591240876, 0.09124087591240876, 0.08394160583941605, 0.2773722627737226, 0.12043795620437957, 0.10218978102189781, 0.08029197080291971, 0.072992700729927, 0.08029197080291971, 0.08394160583941605, 0.07664233576642336, 0.072992700729927, 0.06204379562043796, 0.06204379562043796, 0.058394160583941604, 0.058394160583941604, 0.06204379562043796, 0.06204379562043796, 0.06204379562043796, 0.08759124087591241, 0.13503649635036497, 0.9014598540145985, 0.36496350364963503, 0.10948905109489052, 0.864963503649635, 0.9087591240875912, 0.927007299270073, 0.8795620437956204, 0.8248175182481752, 0.06934306569343066, 0.04744525547445255, 0.0364963503649635, 0.0364963503649635, 0.032846715328467155, 0.01824817518248175, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.8503649635036497, 0.8394160583941606, 0.010948905109489052, 0.9379562043795621, 0.010948905109489052, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.025547445255474453, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.0364963503649635, 0.0364963503649635, 0.040145985401459854, 0.043795620437956206, 0.05474452554744526, 0.08394160583941605, 0.33211678832116787, 0.9124087591240876], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EutB.gap.json b/pfam_gap_rates/EutB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8aa2c23b08b365b5e3e33ae2b0afa900c20f804c
--- /dev/null
+++ b/pfam_gap_rates/EutB.gap.json
@@ -0,0 +1 @@
+{"family": "EutB", "n_seqs": 289, "length": 443, "gap_rates": [0.1453287197231834, 0.07612456747404844, 0.07612456747404844, 0.06228373702422145, 0.05536332179930796, 0.03806228373702422, 0.03806228373702422, 0.03460207612456748, 0.03460207612456748, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Exo_endo_phos_2.gap.json b/pfam_gap_rates/Exo_endo_phos_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd5fdbebdd609340b3557ce5b01a437825575254
--- /dev/null
+++ b/pfam_gap_rates/Exo_endo_phos_2.gap.json
@@ -0,0 +1 @@
+{"family": "Exo_endo_phos_2", "n_seqs": 2391, "length": 150, "gap_rates": [0.8067754077791719, 0.411125052279381, 0.3099121706398996, 0.2588874947720619, 0.24132162275198663, 0.22710163111668757, 0.22082810539523212, 0.22040987034713508, 0.2179004600585529, 0.21539104976997073, 0.21455457967377667, 0.2112086992890004, 0.6930154746967796, 0.9330823923044751, 0.8339606859054789, 0.6649937264742786, 0.6248431618569636, 0.5089920535340862, 0.4479297365119197, 0.2584692597239649, 0.21664575491426183, 0.1877875365955667, 0.17691342534504392, 0.16269343370974487, 0.15432873274780426, 0.14470932664157257, 0.14178168130489335, 0.13258051024675868, 0.12672521957340024, 0.1246340443329151, 0.11543287327478043, 0.10664993726474278, 0.10037641154328733, 0.10037641154328733, 0.27728983688833125, 0.5010455876202425, 0.8636553743203681, 0.6867419489753241, 0.0698452530322041, 0.05269761606022585, 0.04182350480970305, 0.03554997908824759, 0.03053115851108323, 0.029276453366792136, 0.026767043078209953, 0.025512337933918862, 0.02383939774153074, 0.02300292764533668, 0.021748222501045588, 0.02383939774153074, 0.022166457549142617, 0.019238812212463405, 0.018402342116269343, 0.020493517356754497, 0.026767043078209953, 0.16102049351735676, 0.1848598912588875, 0.15558343789209536, 0.15851108322877458, 0.5959849435382685, 0.7457130907570054, 0.8301965704726056, 0.8854035968214137, 0.9109159347553325, 0.9372647427854455, 0.9054788791300711, 0.8582183186951067, 0.8021748222501046, 0.6925972396486826, 0.48264324550397325, 0.030112923462986198, 0.020493517356754497, 0.019238812212463405, 0.01756587202007528, 0.017984107068172314, 0.016729401923881223, 0.017984107068172314, 0.018820577164366373, 0.018820577164366373, 0.018402342116269343, 0.018820577164366373, 0.019238812212463405, 0.016729401923881223, 0.017984107068172314, 0.019657047260560435, 0.020493517356754497, 0.2797992471769134, 0.2580510246758678, 0.8732747804265998, 0.8929318276871602, 0.9230447511501464, 0.8795483061480552, 0.8682559598494354, 0.03931409452112087, 0.03889585947302384, 0.2659974905897114, 0.08950230029276453, 0.9393559180259305, 0.1547469677959013, 0.08197406942701799, 0.8477624424926808, 0.056879966541196154, 0.05144291091593475, 0.05520702634880803, 0.1053952321204517, 0.09661229611041405, 0.13843580092011712, 0.13341698034295274, 0.13927227101631118, 0.684650773734839, 0.946047678795483, 0.8406524466750314, 0.5437055625261397, 0.1271434546214973, 0.07988289418653283, 0.07360936846507737, 0.07486407360936846, 0.07570054370556252, 0.07695524884985362, 0.0836470096194061, 0.08573818485989126, 0.0890840652446675, 0.09159347553324969, 0.10163111668757842, 0.11292346298619825, 0.12254286909242995, 0.12923462986198245, 0.1342534504391468, 0.14052697616060225, 0.5127561689669594, 0.8189042241739858, 0.931409452112087, 0.6691760769552488, 0.3069845253032204, 0.232956921790046, 0.20033458803847762, 0.19238812212463405, 0.19657047260560434, 0.2107904642409034, 0.20158929318276872, 0.19949811794228356, 0.1999163529903806, 0.20242576327896278, 0.20242576327896278, 0.20242576327896278, 0.2112086992890004, 0.2179004600585529, 0.2396486825595985, 0.3856127143454621, 0.9477206189878712], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/F-box.gap.json b/pfam_gap_rates/F-box.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8df498f14a476ff6c715813f7b633ab6f271ad36
--- /dev/null
+++ b/pfam_gap_rates/F-box.gap.json
@@ -0,0 +1 @@
+{"family": "F-box", "n_seqs": 5000, "length": 49, "gap_rates": [0.945, 0.6462, 0.4116, 0.333, 0.2282, 0.1054, 0.0844, 0.0548, 0.0302, 0.016, 0.0116, 0.0082, 0.0048, 0.0032, 0.0024, 0.0018, 0.0014, 0.0032, 0.001, 0.0006, 0.001, 0.0004, 0.9446, 0.8936, 0.0004, 0.001, 0.0008, 0.0012, 0.0016, 0.0022, 0.004, 0.0054, 0.0076, 0.012, 0.017, 0.0356, 0.0608, 0.0978, 0.1402, 0.2252, 0.2904, 0.3684, 0.4774, 0.5446, 0.643, 0.7154, 0.7858, 0.8474, 0.9224], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/F420_ligase.gap.json b/pfam_gap_rates/F420_ligase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e17595ad29ffe5336b5b42f5802a1f887391fa54
--- /dev/null
+++ b/pfam_gap_rates/F420_ligase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FAD_binding_1.gap.json b/pfam_gap_rates/FAD_binding_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46b24391d560145da39989ca559953269430f20e
--- /dev/null
+++ b/pfam_gap_rates/FAD_binding_1.gap.json
@@ -0,0 +1 @@
+{"family": "FAD_binding_1", "n_seqs": 1898, "length": 239, "gap_rates": [0.8256059009483667, 0.7608008429926238, 0.5958904109589042, 0.541095890410959, 0.48366701791359323, 0.4383561643835616, 0.38198103266596417, 0.3403582718651212, 0.2950474183350896, 0.2608008429926238, 0.23603793466807166, 0.21812434141201265, 0.21443624868282402, 0.20916754478398314, 0.20442571127502634, 0.2017913593256059, 0.20073761854583771, 0.19968387776606955, 0.19863013698630136, 0.19546891464699684, 0.31822971548998946, 0.1928345626975764, 0.18124341412012646, 0.1791359325605901, 0.17650158061116966, 0.1691253951527924, 0.17123287671232876, 0.16332982086406744, 0.15226554267650158, 0.1517386722866175, 0.1506849315068493, 0.15121180189673342, 0.15806111696522657, 0.1654373024236038, 0.16859852476290832, 0.1928345626975764, 0.19125395152792413, 0.9077976817702845, 0.9373024236037935, 0.928872497365648, 0.832982086406744, 0.12750263435194942, 0.1053740779768177, 0.09483667017913593, 0.09009483667017913, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FAD_binding_5.gap.json b/pfam_gap_rates/FAD_binding_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61b20f214aef2f9f5a5071ac447d58dcaaed30a5
--- /dev/null
+++ b/pfam_gap_rates/FAD_binding_5.gap.json
@@ -0,0 +1 @@
+{"family": "FAD_binding_5", "n_seqs": 2447, "length": 238, "gap_rates": [0.6624438087454025, 0.5194115243154883, 0.2991418062934205, 0.13526767470371884, 0.10257458111973845, 0.0894973436861463, 0.08336738863914998, 0.08091540662035145, 0.07764609726195341, 0.0768287699223539, 0.07519411524315488, 0.07315079689415611, 0.07151614221495708, 0.07069881487535758, 0.06988148753575807, 0.07029015120555783, 0.06947282386595832, 0.08009807928075194, 0.07887208827135268, 0.8859828361258684, 0.9280751941152432, 0.9186759297098488, 0.6873722926031876, 0.2006538618716796, 0.08827135267674703, 0.05026563138536984, 0.047813649366571315, 0.04331834899877401, 0.03759705762157744, 0.03596240294237842, 0.03596240294237842, 0.03473641193297916, 0.04168369431957499, 0.04944830404577033, 0.05353494074376788, 0.0551695954229669, 0.047813649366571315, 0.04495300367797303, 0.04372701266857376, 0.042909685328974254, 0.03882304863097671, 0.03759705762157744, 0.037188393951777685, 0.04086636697997548, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FAD_binding_8.gap.json b/pfam_gap_rates/FAD_binding_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1c0f1225301078e254728cd3e219d3e8defecd5
--- /dev/null
+++ b/pfam_gap_rates/FAD_binding_8.gap.json
@@ -0,0 +1 @@
+{"family": "FAD_binding_8", "n_seqs": 2283, "length": 146, "gap_rates": [0.9408672798948752, 0.8212877792378449, 0.7078405606657906, 0.6162943495400789, 0.5317564607971966, 0.4021024967148489, 0.35523434077967586, 0.32238282961016207, 0.3057380639509417, 0.2833990363556724, 0.2588699080157687, 0.23039859833552342, 0.18484450284713097, 0.16819973718791065, 0.15462111257117828, 0.14323258869908015, 0.13184406482698205, 0.11782742006132282, 0.11432325886990802, 0.1073149364870784, 0.1020586946999562, 0.09373631187034603, 0.08322382829610162, 0.08716600963644328, 0.23390275952693823, 0.797634691195795, 0.923784494086728, 0.19842312746386334, 0.05913272010512484, 0.017520805957074025, 0.01401664476565922, 0.011388523872098117, 0.010074463425317565, 0.009636443276390714, 0.009198423127463863, 0.008322382829610162, 0.008322382829610162, 0.00788436268068331, 0.00788436268068331, 0.007446342531756461, 0.8607095926412615, 0.010074463425317565, 0.008322382829610162, 0.00788436268068331, 0.010950503723171266, 0.42882172579938677, 0.4196233026719229, 0.9474375821287779, 0.911957950065703, 0.45729303547963207, 0.4073587385019711, 0.010950503723171266, 0.004380201489268506, 0.005256241787122208, 0.005256241787122208, 0.0056942619360490585, 0.005256241787122208, 0.004818221638195357, 0.010512483574244415, 0.010950503723171266, 0.06176084099868594, 0.04686815593517302, 0.04730617608409987, 0.6955759964958388, 0.8392466053438458, 0.885676741130092, 0.9347349978098992, 0.9461235216819974, 0.9167761717038984, 0.8628996933858958, 0.8103372755146737, 0.5786246167323696, 0.04643013578624617, 0.05387647831800263, 0.05694261936049058, 0.060008760402978534, 0.06132282084975909, 0.06044678055190539, 0.06176084099868594, 0.060884800700832235, 0.06044678055190539, 0.06132282084975909, 0.0639509417433202, 0.0657030223390276, 0.0683311432325887, 0.0718353044240035, 0.0718353044240035, 0.07402540516863776, 0.07402540516863776, 0.07490144546649145, 0.07971966710468681, 0.09067017082785808, 0.10906701708278581, 0.12220762155059132, 0.13359614542268944, 0.1427945685501533, 0.1686377573368375, 0.5965834428383706, 0.5654840122645641, 0.6697328077091547, 0.6872536136662286, 0.7060884800700832, 0.7236092860271572, 0.7380639509417434, 0.762593079281647, 0.7893123083661848, 0.8611476127901884, 0.8948751642575559, 0.9211563731931669, 0.9369250985545335, 0.9430573806395094, 0.9491896627244854, 0.9395532194480947, 0.9299167761717039, 0.9049496276828735, 0.8786684187472624, 0.8169075777485765, 0.7779237844940867, 0.7402540516863776, 0.7314936487078406, 0.7152869031975471, 0.6938239159001314, 0.6763031099430574, 0.6596583442838371, 0.5615418309242225, 0.5361366622864652, 0.44502847130968026, 0.5151116951379764, 0.33596145422689444, 0.2728865527814279, 0.23390275952693823, 0.2102496714848883, 0.20543144984669295, 0.18791064388961892, 0.1809023215067893, 0.17871222076215507, 0.17915024091108192, 0.1800262812089356, 0.17958826106000875, 0.1809023215067893, 0.18134034165571616, 0.18265440210249673, 0.18878668418747263, 0.2974156811213316, 0.5247481384143671, 0.9478756022777047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FANCI_S2.gap.json b/pfam_gap_rates/FANCI_S2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62e729a78761b114354d074ddc9e49c834f561b5
--- /dev/null
+++ b/pfam_gap_rates/FANCI_S2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FAO_M.gap.json b/pfam_gap_rates/FAO_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5745a28f0f0864e9b2a6d1314df6108e6c84f0c7
--- /dev/null
+++ b/pfam_gap_rates/FAO_M.gap.json
@@ -0,0 +1 @@
+{"family": "FAO_M", "n_seqs": 666, "length": 57, "gap_rates": [0.33633633633633636, 0.07957957957957958, 0.06006006006006006, 0.03753753753753754, 0.016516516516516516, 0.010510510510510511, 0.003003003003003003, 0.003003003003003003, 0.003003003003003003, 0.003003003003003003, 0.003003003003003003, 0.003003003003003003, 0.003003003003003003, 0.0, 0.0, 0.0, 0.0, 0.9234234234234234, 0.015015015015015015, 0.0, 0.003003003003003003, 0.3258258258258258, 0.012012012012012012, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0015015015015015015, 0.003003003003003003, 0.0015015015015015015, 0.0015015015015015015, 0.0045045045045045045, 0.003003003003003003, 0.0075075075075075074, 0.01951951951951952, 0.018018018018018018, 0.009009009009009009, 0.010510510510510511, 0.010510510510510511, 0.012012012012012012, 0.013513513513513514, 0.018018018018018018, 0.015015015015015015, 0.013513513513513514, 0.013513513513513514, 0.016516516516516516, 0.016516516516516516, 0.036036036036036036, 0.07207207207207207, 0.13513513513513514, 0.4624624624624625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FAST_1.gap.json b/pfam_gap_rates/FAST_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7be777707cc68f577e3679f6e851b5e79a962014
--- /dev/null
+++ b/pfam_gap_rates/FAST_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FAT.gap.json b/pfam_gap_rates/FAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..051b961150dddbea0b33a0c6e3cddcd2e0cb00fa
--- /dev/null
+++ b/pfam_gap_rates/FAT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FBPase_3.gap.json b/pfam_gap_rates/FBPase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef6b205e76787d9b449bee43c1f9ba297967212a
--- /dev/null
+++ b/pfam_gap_rates/FBPase_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FDF.gap.json b/pfam_gap_rates/FDF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..31e123b51b85564d1c3f71f03db328a16961718c
--- /dev/null
+++ b/pfam_gap_rates/FDF.gap.json
@@ -0,0 +1 @@
+{"family": "FDF", "n_seqs": 382, "length": 123, "gap_rates": [0.8298429319371727, 0.5130890052356021, 0.2198952879581152, 0.0968586387434555, 0.04450261780104712, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.01832460732984293, 0.02356020942408377, 0.020942408376963352, 0.020942408376963352, 0.01832460732984293, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.01832460732984293, 0.01832460732984293, 0.031413612565445025, 0.015706806282722512, 0.01832460732984293, 0.02356020942408377, 0.02617801047120419, 0.028795811518324606, 0.08115183246073299, 0.06806282722513089, 0.07591623036649214, 0.08638743455497382, 0.13089005235602094, 0.31151832460732987, 0.337696335078534, 0.2931937172774869, 0.5314136125654451, 0.6413612565445026, 0.7146596858638743, 0.7853403141361257, 0.8769633507853403, 0.900523560209424, 0.9240837696335078, 0.9345549738219895, 0.9214659685863874, 0.8926701570680629, 0.8507853403141361, 0.7460732984293194, 0.675392670157068, 0.5680628272251309, 0.4816753926701571, 0.18324607329842932, 0.1544502617801047, 0.1256544502617801, 0.09424083769633508, 0.08376963350785341, 0.07068062827225131, 0.06282722513089005, 0.060209424083769635, 0.060209424083769635, 0.060209424083769635, 0.06282722513089005, 0.08376963350785341, 0.07591623036649214, 0.07068062827225131, 0.07329842931937172, 0.06544502617801047, 0.06806282722513089, 0.06806282722513089, 0.06544502617801047, 0.07068062827225131, 0.08115183246073299, 0.08900523560209424, 0.09424083769633508, 0.09424083769633508, 0.0968586387434555, 0.09947643979057591, 0.10471204188481675, 0.11518324607329843, 0.11780104712041885, 0.12041884816753927, 0.12303664921465969, 0.12303664921465969, 0.12827225130890052, 0.14136125654450263, 0.15706806282722513, 0.17015706806282724, 0.20418848167539266, 0.20157068062827224, 0.2094240837696335, 0.3743455497382199, 0.3586387434554974, 0.34293193717277487, 0.35340314136125656, 0.5968586387434555, 0.599476439790576, 0.6308900523560209, 0.9319371727748691, 0.9397905759162304, 0.93717277486911, 0.9267015706806283, 0.49476439790575916, 0.2643979057591623, 0.2617801047120419, 0.2643979057591623, 0.2696335078534031, 0.27225130890052357, 0.27486910994764396, 0.2774869109947644, 0.2879581151832461, 0.3586387434554974, 0.8167539267015707, 0.3036649214659686, 0.306282722513089, 0.306282722513089, 0.31151832460732987, 0.387434554973822, 0.5575916230366492], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FGE-sulfatase.gap.json b/pfam_gap_rates/FGE-sulfatase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a81feb6b4c991b614422e50523764795747f4da6
--- /dev/null
+++ b/pfam_gap_rates/FGE-sulfatase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FISNA.gap.json b/pfam_gap_rates/FISNA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e94be7666349de80196561489a7a16e76bc2080
--- /dev/null
+++ b/pfam_gap_rates/FISNA.gap.json
@@ -0,0 +1 @@
+{"family": "FISNA", "n_seqs": 355, "length": 73, "gap_rates": [0.13802816901408452, 0.0676056338028169, 0.056338028169014086, 0.04225352112676056, 0.022535211267605635, 0.022535211267605635, 0.022535211267605635, 0.01971830985915493, 0.01971830985915493, 0.01971830985915493, 0.02535211267605634, 0.01971830985915493, 0.01971830985915493, 0.01971830985915493, 0.01971830985915493, 0.008450704225352112, 0.005633802816901409, 0.005633802816901409, 0.014084507042253521, 0.016901408450704224, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0028169014084507044, 0.0028169014084507044, 0.0028169014084507044, 0.005633802816901409, 0.005633802816901409, 0.005633802816901409, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.008450704225352112, 0.011267605633802818, 0.011267605633802818, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.011267605633802818, 0.9098591549295775, 0.011267605633802818, 0.014084507042253521, 0.016901408450704224, 0.022535211267605635, 0.028169014084507043, 0.04225352112676056, 0.04788732394366197, 0.08169014084507042, 0.04225352112676056, 0.028169014084507043, 0.02535211267605634, 0.02535211267605634, 0.030985915492957747, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.22535211267605634], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FIST.gap.json b/pfam_gap_rates/FIST.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..037a85ef7c4b73fd31daf8752cbf9cc2b130af3f
--- /dev/null
+++ b/pfam_gap_rates/FIST.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FLILHELTA.gap.json b/pfam_gap_rates/FLILHELTA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b258f53c6abec5ac70db99f30bf508dc03a741a8
--- /dev/null
+++ b/pfam_gap_rates/FLILHELTA.gap.json
@@ -0,0 +1 @@
+{"family": "FLILHELTA", "n_seqs": 105, "length": 117, "gap_rates": [0.5619047619047619, 0.45714285714285713, 0.41904761904761906, 0.4, 0.38095238095238093, 0.3619047619047619, 0.3619047619047619, 0.3523809523809524, 0.3238095238095238, 0.22857142857142856, 0.18095238095238095, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.13333333333333333, 0.11428571428571428, 0.10476190476190476, 0.08571428571428572, 0.05714285714285714, 0.047619047619047616, 0.047619047619047616, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3904761904761905, 0.42857142857142855, 0.9238095238095239, 0.8952380952380953, 0.4857142857142857, 0.5523809523809524, 0.5714285714285714, 0.5619047619047619, 0.7333333333333333, 0.7523809523809524, 0.7619047619047619, 0.7619047619047619, 0.8, 0.8095238095238095, 0.8476190476190476, 0.8952380952380953, 0.9238095238095239, 0.9238095238095239, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.9333333333333333, 0.9238095238095239, 0.9047619047619048, 0.8761904761904762, 0.8285714285714286, 0.8, 0.780952380952381, 0.7619047619047619, 0.7619047619047619, 0.7523809523809524, 0.7047619047619048, 0.29523809523809524, 0.2857142857142857, 0.22857142857142856, 0.12380952380952381, 0.11428571428571428, 0.11428571428571428, 0.34285714285714286, 0.3238095238095238, 0.21904761904761905, 0.5904761904761905, 0.6857142857142857, 0.6190476190476191, 0.45714285714285713, 0.21904761904761905, 0.11428571428571428, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.09523809523809523, 0.09523809523809523, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.12380952380952381, 0.13333333333333333, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.18095238095238095, 0.22857142857142856, 0.24761904761904763, 0.3238095238095238, 0.5428571428571428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FMN_bind_2.gap.json b/pfam_gap_rates/FMN_bind_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..776b9dabc7eab7b7e326714f3d0f5ae06584a2d9
--- /dev/null
+++ b/pfam_gap_rates/FMN_bind_2.gap.json
@@ -0,0 +1 @@
+{"family": "FMN_bind_2", "n_seqs": 514, "length": 213, "gap_rates": [0.17315175097276264, 0.12062256809338522, 0.10505836575875487, 0.09727626459143969, 0.08754863813229571, 0.07782101167315175, 0.07003891050583658, 0.08560311284046693, 0.06031128404669261, 0.0622568093385214, 0.05058365758754864, 0.048638132295719845, 0.048638132295719845, 0.03696498054474708, 0.03501945525291829, 0.054474708171206226, 0.033073929961089495, 0.033073929961089495, 0.029182879377431907, 0.029182879377431907, 0.029182879377431907, 0.029182879377431907, 0.029182879377431907, 0.029182879377431907, 0.029182879377431907, 0.029182879377431907, 0.029182879377431907, 0.029182879377431907, 0.0311284046692607, 0.027237354085603113, 0.029182879377431907, 0.03501945525291829, 0.038910505836575876, 0.8404669260700389, 0.877431906614786, 0.8696498054474708, 0.7392996108949417, 0.07198443579766536, 0.04085603112840467, 0.033073929961089495, 0.02529182879377432, 0.023346303501945526, 0.023346303501945526, 0.021400778210116732, 0.019455252918287938, 0.019455252918287938, 0.021400778210116732, 0.021400778210116732, 0.8346303501945526, 0.8754863813229572, 0.943579766536965, 0.8657587548638133, 0.7840466926070039, 0.4182879377431907, 0.21011673151750973, 0.19649805447470817, 0.06614785992217899, 0.03501945525291829, 0.0311284046692607, 0.0622568093385214, 0.1303501945525292, 0.07198443579766536, 0.019455252918287938, 0.019455252918287938, 0.019455252918287938, 0.019455252918287938, 0.019455252918287938, 0.019455252918287938, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.023346303501945526, 0.0311284046692607, 0.8521400778210116, 0.867704280155642, 0.8793774319066148, 0.8813229571984436, 0.8891050583657587, 0.896887159533074, 0.9280155642023347, 0.943579766536965, 0.9085603112840467, 0.8929961089494164, 0.8832684824902723, 0.8813229571984436, 0.8715953307392996, 0.8599221789883269, 0.8443579766536965, 0.07003891050583658, 0.04474708171206226, 0.029182879377431907, 0.027237354085603113, 0.41050583657587547, 0.019455252918287938, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.8871595330739299, 0.017509727626459144, 0.01556420233463035, 0.01556420233463035, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.42023346303501946, 0.4708171206225681, 0.4785992217898833, 0.4727626459143969, 0.8326848249027238, 0.14785992217898833, 0.017509727626459144, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.013618677042801557, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.02529182879377432, 0.019455252918287938, 0.023346303501945526, 0.8832684824902723, 0.8852140077821011, 0.896887159533074, 0.8852140077821011, 0.8832684824902723, 0.8754863813229572, 0.29377431906614787, 0.027237354085603113, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.017509727626459144, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.017509727626459144, 0.9299610894941635, 0.9260700389105059, 0.23540856031128404, 0.17509727626459143, 0.06614785992217899, 0.0622568093385214, 0.033073929961089495, 0.8171206225680934, 0.8754863813229572, 0.896887159533074, 0.9105058365758755, 0.9124513618677043, 0.9494163424124513, 0.9124513618677043, 0.9046692607003891, 0.8813229571984436, 0.857976653696498, 0.8054474708171206, 0.029182879377431907, 0.07587548638132295, 0.07198443579766536, 0.04085603112840467, 0.122568093385214, 0.048638132295719845, 0.0311284046692607, 0.027237354085603113, 0.023346303501945526, 0.02529182879377432, 0.07003891050583658, 0.033073929961089495, 0.0311284046692607, 0.02529182879377432, 0.02529182879377432, 0.02529182879377432, 0.02529182879377432, 0.02529182879377432, 0.02529182879377432, 0.02529182879377432, 0.02529182879377432, 0.027237354085603113, 0.027237354085603113, 0.033073929961089495, 0.042801556420233464, 0.0933852140077821, 0.5389105058365758], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FRG.gap.json b/pfam_gap_rates/FRG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3aeba9c27fcd4d28905547945303d6c4236112ba
--- /dev/null
+++ b/pfam_gap_rates/FRG.gap.json
@@ -0,0 +1 @@
+{"family": "FRG", "n_seqs": 191, "length": 119, "gap_rates": [0.4712041884816754, 0.193717277486911, 0.08376963350785341, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.09947643979057591, 0.9319371727748691, 0.08376963350785341, 0.08376963350785341, 0.08376963350785341, 0.9476439790575916, 0.9424083769633508, 0.06282722513089005, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.06282722513089005, 0.1518324607329843, 0.1518324607329843, 0.18848167539267016, 0.4712041884816754, 0.4869109947643979, 0.4712041884816754, 0.6544502617801047, 0.7486910994764397, 0.8115183246073299, 0.8534031413612565, 0.8743455497382199, 0.9109947643979057, 0.9319371727748691, 0.93717277486911, 0.93717277486911, 0.9214659685863874, 0.8952879581151832, 0.8743455497382199, 0.8481675392670157, 0.806282722513089, 0.7172774869109948, 0.6073298429319371, 0.13612565445026178, 0.1099476439790576, 0.08376963350785341, 0.07853403141361257, 0.08376963350785341, 0.08376963350785341, 0.07853403141361257, 0.07329842931937172, 0.08900523560209424, 0.07329842931937172, 0.06282722513089005, 0.06282722513089005, 0.05759162303664921, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.1256544502617801, 0.10471204188481675, 0.06806282722513089, 0.06806282722513089, 0.1099476439790576, 0.08900523560209424, 0.09424083769633508, 0.06806282722513089, 0.06282722513089005, 0.1518324607329843, 0.16230366492146597, 0.1256544502617801, 0.49214659685863876, 0.4397905759162304, 0.837696335078534, 0.8900523560209425, 0.9424083769633508, 0.9214659685863874, 0.8638743455497382, 0.8272251308900523, 0.02617801047120419, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005235602094240838, 0.005235602094240838, 0.03664921465968586, 0.13089005235602094, 0.24607329842931938, 0.4083769633507853, 0.5654450261780105, 0.8324607329842932], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FUSC-like.gap.json b/pfam_gap_rates/FUSC-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9be4bdbb3431f247a33994a99cff4756b831775d
--- /dev/null
+++ b/pfam_gap_rates/FUSC-like.gap.json
@@ -0,0 +1 @@
+{"family": "FUSC-like", "n_seqs": 244, "length": 294, "gap_rates": [0.7540983606557377, 0.4672131147540984, 0.38934426229508196, 0.29918032786885246, 0.2581967213114754, 0.22540983606557377, 0.1885245901639344, 0.1721311475409836, 0.1598360655737705, 0.3114754098360656, 0.12295081967213115, 0.11475409836065574, 0.09836065573770492, 0.0778688524590164, 0.06967213114754098, 0.06147540983606557, 0.06147540983606557, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06147540983606557, 0.05327868852459016, 0.04918032786885246, 0.06147540983606557, 0.05327868852459016, 0.045081967213114756, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.036885245901639344, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FYRC.gap.json b/pfam_gap_rates/FYRC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fd6c87b63d6f69bf5310aae83bdb5fa7fa50377
--- /dev/null
+++ b/pfam_gap_rates/FYRC.gap.json
@@ -0,0 +1 @@
+{"family": "FYRC", "n_seqs": 481, "length": 98, "gap_rates": [0.3887733887733888, 0.17255717255717257, 0.13721413721413722, 0.08731808731808732, 0.079002079002079, 0.07692307692307693, 0.08108108108108109, 0.07484407484407485, 0.07276507276507277, 0.10395010395010396, 0.11226611226611227, 0.8128898128898129, 0.7941787941787942, 0.15176715176715178, 0.13513513513513514, 0.0997920997920998, 0.06444906444906445, 0.060291060291060294, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.04573804573804574, 0.04365904365904366, 0.04365904365904366, 0.0395010395010395, 0.0395010395010395, 0.0395010395010395, 0.0395010395010395, 0.037422037422037424, 0.037422037422037424, 0.037422037422037424, 0.037422037422037424, 0.037422037422037424, 0.04573804573804574, 0.04573804573804574, 0.04573804573804574, 0.8856548856548857, 0.9064449064449065, 0.8503118503118503, 0.079002079002079, 0.08523908523908524, 0.079002079002079, 0.07276507276507277, 0.06444906444906445, 0.06652806652806653, 0.06860706860706861, 0.29521829521829523, 0.7920997920997921, 0.8440748440748441, 0.9334719334719335, 0.9126819126819127, 0.8212058212058212, 0.7401247401247402, 0.4864864864864865, 0.3991683991683992, 0.33264033264033266, 0.5280665280665281, 0.30353430353430355, 0.1787941787941788, 0.0395010395010395, 0.035343035343035345, 0.02079002079002079, 0.014553014553014554, 0.012474012474012475, 0.006237006237006237, 0.006237006237006237, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.006237006237006237, 0.006237006237006237, 0.006237006237006237, 0.006237006237006237, 0.008316008316008316, 0.008316008316008316, 0.010395010395010396, 0.018711018711018712, 0.04781704781704782, 0.05197505197505198, 0.060291060291060294, 0.07692307692307693, 0.09771309771309772, 0.11226611226611227, 0.12474012474012475, 0.13721413721413722, 0.14137214137214138, 0.8648648648648649, 0.8690228690228691, 0.7796257796257796, 0.23492723492723494, 0.39501039501039503, 0.49272349272349275, 0.6174636174636174, 0.6902286902286903], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FYVE.gap.json b/pfam_gap_rates/FYVE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56beb531b0a2f97d01753090ec4ea4e8ec407e4c
--- /dev/null
+++ b/pfam_gap_rates/FYVE.gap.json
@@ -0,0 +1 @@
+{"family": "FYVE", "n_seqs": 3844, "length": 90, "gap_rates": [0.4209157127991675, 0.3103537981269511, 0.2827783558792924, 0.25806451612903225, 0.23777315296566076, 0.2026534859521332, 0.13267429760665972, 0.08090530697190426, 0.02991675338189386, 0.02133194588969823, 0.01847034339229969, 0.01847034339229969, 0.018730489073881373, 0.9487513007284079, 0.9458896982310093, 0.012747138397502602, 0.012747138397502602, 0.01222684703433923, 0.012747138397502602, 0.01222684703433923, 0.895681581685744, 0.01404786680541103, 0.009885535900104058, 0.018730489073881373, 0.006243496357960458, 0.004682622268470343, 0.002081165452653486, 0.003121748178980229, 0.001040582726326743, 0.0013007284079084287, 0.0007804370447450572, 0.0007804370447450572, 0.003902185223725286, 0.004162330905306972, 0.004162330905306972, 0.005202913631633715, 0.007544224765868887, 0.008064516129032258, 0.00858480749219563, 0.009625390218522373, 0.010926118626430802, 0.010665972944849115, 0.01222684703433923, 0.023933402705515087, 0.026014568158168574, 0.02809573361082206, 0.06711758584807492, 0.08949011446409989, 0.1259105098855359, 0.8072320499479708, 0.8337669094693028, 0.8712278876170656, 0.8873569198751301, 0.8972424557752341, 0.9110301768990635, 0.9245577523413111, 0.9354838709677419, 0.9399063475546305, 0.9443288241415192, 0.9484911550468262, 0.9414672216441207, 0.9383454734651405, 0.9318418314255983, 0.9196149843912591, 0.9011446409989594, 0.8936004162330905, 0.8782518210197711, 0.8483350676378772, 0.8165972944849116, 0.7362122788761707, 0.5988553590010406, 0.25026014568158167, 0.14177939646201873, 0.07622268470343392, 0.06997918834547347, 0.06607700312174818, 0.06477627471383975, 0.06373569198751301, 0.04292403746097815, 0.042403746097814776, 0.04266389177939646, 0.044745057232049947, 0.04500520291363164, 0.04890738813735692, 0.049427679500520294, 0.055150884495317375, 0.13579604578563995, 0.2666493236212279, 0.4214360041623309, 0.7187825182101977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fapy_DNA_glyco.gap.json b/pfam_gap_rates/Fapy_DNA_glyco.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7102e49d16e4caa3b9563671b291b011386033b
--- /dev/null
+++ b/pfam_gap_rates/Fapy_DNA_glyco.gap.json
@@ -0,0 +1 @@
+{"family": "Fapy_DNA_glyco", "n_seqs": 2320, "length": 156, "gap_rates": [0.04655172413793104, 0.0375, 0.03577586206896552, 0.03405172413793103, 0.03362068965517241, 0.032758620689655175, 0.032327586206896554, 0.03103448275862069, 0.03103448275862069, 0.030603448275862068, 0.028448275862068967, 0.027586206896551724, 0.026293103448275863, 0.02543103448275862, 0.02586206896551724, 0.0375, 0.04396551724137931, 0.02543103448275862, 0.023706896551724137, 0.027155172413793102, 0.02327586206896552, 0.02413793103448276, 0.021982758620689654, 0.04396551724137931, 0.03362068965517241, 0.03146551724137931, 0.034913793103448276, 0.028448275862068967, 0.4224137931034483, 0.17629310344827587, 0.15517241379310345, 0.125, 0.10862068965517241, 0.10474137931034483, 0.039655172413793106, 0.03362068965517241, 0.9025862068965518, 0.9439655172413793, 0.9370689655172414, 0.8642241379310345, 0.20474137931034483, 0.8086206896551724, 0.9094827586206896, 0.5418103448275862, 0.1400862068965517, 0.07112068965517242, 0.07370689655172413, 0.08448275862068966, 0.05517241379310345, 0.032758620689655175, 0.05818965517241379, 0.025, 0.017241379310344827, 0.0125, 0.01206896551724138, 0.01293103448275862, 0.011206896551724138, 0.01293103448275862, 0.015948275862068966, 0.015086206896551725, 0.014655172413793103, 0.015086206896551725, 0.013793103448275862, 0.01293103448275862, 0.01293103448275862, 0.0125, 0.0125, 0.0125, 0.01293103448275862, 0.013362068965517242, 0.013793103448275862, 0.2987068965517241, 0.013793103448275862, 0.8504310344827586, 0.8814655172413793, 0.9198275862068965, 0.9474137931034483, 0.9357758620689656, 0.9004310344827586, 0.8581896551724137, 0.8137931034482758, 0.013793103448275862, 0.013362068965517242, 0.01293103448275862, 0.01206896551724138, 0.01206896551724138, 0.011206896551724138, 0.011206896551724138, 0.011206896551724138, 0.011206896551724138, 0.009913793103448277, 0.009913793103448277, 0.009482758620689655, 0.009482758620689655, 0.009482758620689655, 0.9474137931034483, 0.009913793103448277, 0.01163793103448276, 0.6525862068965518, 0.721551724137931, 0.7672413793103449, 0.7853448275862069, 0.8146551724137931, 0.8310344827586207, 0.8642241379310345, 0.9211206896551725, 0.9344827586206896, 0.8974137931034483, 0.8379310344827586, 0.8219827586206897, 0.7922413793103448, 0.7810344827586206, 0.7504310344827586, 0.6982758620689655, 0.6008620689655172, 0.175, 0.15991379310344828, 0.10948275862068965, 0.10043103448275863, 0.09267241379310345, 0.1, 0.09956896551724138, 0.7918103448275862, 0.5133620689655173, 0.10862068965517241, 0.9491379310344827, 0.9448275862068966, 0.10905172413793103, 0.11120689655172414, 0.1125, 0.1146551724137931, 0.11508620689655172, 0.11767241379310345, 0.12241379310344827, 0.1331896551724138, 0.19439655172413794, 0.8728448275862069, 0.9288793103448276, 0.9086206896551724, 0.8418103448275862, 0.19224137931034482, 0.19137931034482758, 0.19008620689655173, 0.18663793103448276, 0.19224137931034482, 0.20043103448275862, 0.20560344827586208, 0.23275862068965517, 0.24525862068965518, 0.2508620689655172, 0.25818965517241377, 0.2689655172413793, 0.27327586206896554, 0.2775862068965517, 0.2875, 0.4788793103448276], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FdtA.gap.json b/pfam_gap_rates/FdtA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f4d20bb43a67ad9f8b08489d07a34a52e4f0922
--- /dev/null
+++ b/pfam_gap_rates/FdtA.gap.json
@@ -0,0 +1 @@
+{"family": "FdtA", "n_seqs": 343, "length": 133, "gap_rates": [0.9183673469387755, 0.5918367346938775, 0.4489795918367347, 0.30612244897959184, 0.2478134110787172, 0.21865889212827988, 0.18658892128279883, 0.17201166180758018, 0.16326530612244897, 0.15160349854227406, 0.1457725947521866, 0.12536443148688048, 0.11661807580174927, 0.119533527696793, 0.9387755102040817, 0.119533527696793, 0.10787172011661808, 0.10787172011661808, 0.10204081632653061, 0.10204081632653061, 0.10204081632653061, 0.09912536443148688, 0.10204081632653061, 0.09912536443148688, 0.12536443148688048, 0.14868804664723032, 0.20116618075801748, 0.11661807580174927, 0.09037900874635568, 0.08746355685131195, 0.08746355685131195, 0.08454810495626822, 0.07871720116618076, 0.0728862973760933, 0.06705539358600583, 0.0641399416909621, 0.061224489795918366, 0.05539358600583091, 0.06997084548104957, 0.06705539358600583, 0.052478134110787174, 0.05830903790087463, 0.0641399416909621, 0.0728862973760933, 0.0641399416909621, 0.13994169096209913, 0.09037900874635568, 0.05539358600583091, 0.05830903790087463, 0.04664723032069971, 0.043731778425655975, 0.037900874635568516, 0.03498542274052478, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.037900874635568516, 0.03498542274052478, 0.03206997084548105, 0.03206997084548105, 0.03498542274052478, 0.03498542274052478, 0.037900874635568516, 0.04081632653061224, 0.029154518950437316, 0.9271137026239067, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.03498542274052478, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.9183673469387755, 0.037900874635568516, 0.029154518950437316, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.023323615160349854, 0.026239067055393587, 0.026239067055393587, 0.023323615160349854, 0.023323615160349854, 0.02040816326530612, 0.08454810495626822, 0.02040816326530612, 0.023323615160349854, 0.026239067055393587, 0.02040816326530612, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.029154518950437316, 0.029154518950437316, 0.03498542274052478, 0.037900874635568516, 0.037900874635568516, 0.04956268221574344, 0.061224489795918366, 0.06705539358600583, 0.07580174927113703, 0.08163265306122448, 0.09329446064139942, 0.11370262390670553, 0.1457725947521866, 0.15451895043731778, 0.15743440233236153, 0.17201166180758018, 0.21574344023323616, 0.22740524781341107, 0.22740524781341107, 0.22740524781341107, 0.22740524781341107, 0.24198250728862974, 0.3177842565597668, 0.6034985422740525], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fe-ADH_2.gap.json b/pfam_gap_rates/Fe-ADH_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90b09f1274c6c539de123a467c7acb2b760f941c
--- /dev/null
+++ b/pfam_gap_rates/Fe-ADH_2.gap.json
@@ -0,0 +1 @@
+{"family": "Fe-ADH_2", "n_seqs": 337, "length": 301, "gap_rates": [0.8367952522255193, 0.2522255192878338, 0.17804154302670624, 0.1572700296735905, 0.14836795252225518, 0.14540059347181009, 0.142433234421365, 0.13649851632047477, 0.13056379821958458, 0.12759643916913946, 0.12462908011869436, 0.11869436201780416, 0.11869436201780416, 0.11572700296735905, 0.11572700296735905, 0.12462908011869436, 0.11572700296735905, 0.8783382789317508, 0.10979228486646884, 0.09792284866468842, 0.9198813056379822, 0.08605341246290801, 0.8516320474777448, 0.8724035608308606, 0.7032640949554896, 0.08605341246290801, 0.08605341246290801, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.0830860534124629, 0.08605341246290801, 0.08605341246290801, 0.0830860534124629, 0.0830860534124629, 0.0771513353115727, 0.0712166172106825, 0.08011869436201781, 0.08011869436201781, 0.0712166172106825, 0.0712166172106825, 0.0712166172106825, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FeoB_C.gap.json b/pfam_gap_rates/FeoB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f98fa4e0ee7d74ea1f0ca7de2939ee195c6076dd
--- /dev/null
+++ b/pfam_gap_rates/FeoB_C.gap.json
@@ -0,0 +1 @@
+{"family": "FeoB_C", "n_seqs": 1744, "length": 55, "gap_rates": [0.42603211009174313, 0.14506880733944955, 0.04529816513761468, 0.028669724770642203, 0.021788990825688075, 0.01548165137614679, 0.008600917431192661, 0.006880733944954129, 0.006307339449541285, 0.0045871559633027525, 0.0040137614678899085, 0.0034403669724770644, 0.0034403669724770644, 0.0034403669724770644, 0.0028669724770642203, 0.0028669724770642203, 0.0028669724770642203, 0.0028669724770642203, 0.0028669724770642203, 0.0028669724770642203, 0.0028669724770642203, 0.5865825688073395, 0.22878440366972477, 0.23738532110091742, 0.007454128440366973, 0.0045871559633027525, 0.007454128440366973, 0.012041284403669725, 0.005160550458715597, 0.8503440366972477, 0.0028669724770642203, 0.0022935779816513763, 0.0011467889908256881, 0.0011467889908256881, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011467889908256881, 0.0017201834862385322, 0.0028669724770642203, 0.006880733944954129, 0.010321100917431193, 0.03669724770642202, 0.12270642201834862, 0.16743119266055045, 0.2098623853211009], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_17.gap.json b/pfam_gap_rates/Fer4_17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f11e081076e7342d7ed3d3cb8194eee4cfff9ff5
--- /dev/null
+++ b/pfam_gap_rates/Fer4_17.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_17", "n_seqs": 2236, "length": 94, "gap_rates": [0.2889087656529517, 0.01073345259391771, 0.01073345259391771, 0.009838998211091235, 0.008944543828264758, 0.00849731663685152, 0.008050089445438283, 0.007602862254025045, 0.008050089445438283, 0.007602862254025045, 0.20706618962432916, 0.006261180679785331, 0.006261180679785331, 0.006261180679785331, 0.006261180679785331, 0.007602862254025045, 0.006261180679785331, 0.8864042933810375, 0.8886404293381037, 0.9347048300536672, 0.9382826475849732, 0.9244186046511628, 0.8868515205724508, 0.832737030411449, 0.007602862254025045, 0.013416815742397137, 0.012522361359570662, 0.9114490161001789, 0.945438282647585, 0.9409660107334525, 0.8980322003577818, 0.01744186046511628, 0.6243291592128801, 0.6404293381037567, 0.5997316636851521, 0.012075134168157423, 0.012522361359570662, 0.013864042933810376, 0.009838998211091235, 0.007602862254025045, 0.008944543828264758, 0.011180679785330949, 0.025044722719141325, 0.013416815742397137, 0.01073345259391771, 0.3425760286225403, 0.4467799642218247, 0.4856887298747764, 0.5496422182468694, 0.5952593917710197, 0.9400715563506261, 0.5755813953488372, 0.5290697674418605, 0.47093023255813954, 0.3940071556350626, 0.31082289803220037, 0.01744186046511628, 0.07826475849731664, 0.07155635062611806, 0.06932021466905187, 0.07826475849731664, 0.12254025044722719, 0.12477638640429338, 0.11001788908765653, 0.007155635062611807, 0.7741502683363148, 0.8412343470483006, 0.8980322003577818, 0.9485688729874776, 0.9177101967799642, 0.8582289803220036, 0.8148479427549195, 0.7316636851520573, 0.0026833631484794273, 0.0022361359570661895, 0.0022361359570661895, 0.0017889087656529517, 0.0017889087656529517, 0.0017889087656529517, 0.0017889087656529517, 0.0017889087656529517, 0.0017889087656529517, 0.0017889087656529517, 0.0017889087656529517, 0.0017889087656529517, 0.0017889087656529517, 0.005813953488372093, 0.004919499105545617, 0.0022361359570661895, 0.004025044722719142, 0.008944543828264758, 0.01699463327370304, 0.040697674418604654, 0.3644901610017889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_19.gap.json b/pfam_gap_rates/Fer4_19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3eab44850ab59d16b742224a16d1eb09a463b627
--- /dev/null
+++ b/pfam_gap_rates/Fer4_19.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_19", "n_seqs": 186, "length": 70, "gap_rates": [0.3763440860215054, 0.27419354838709675, 0.21505376344086022, 0.1827956989247312, 0.16129032258064516, 0.08602150537634409, 0.03763440860215054, 0.026881720430107527, 0.021505376344086023, 0.026881720430107527, 0.03225806451612903, 0.021505376344086023, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.14516129032258066, 0.010752688172043012, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.9032258064516129, 0.1881720430107527, 0.1881720430107527, 0.1881720430107527, 0.8655913978494624, 0.8817204301075269, 0.8924731182795699, 0.8655913978494624, 0.8440860215053764, 0.03763440860215054, 0.010752688172043012, 0.016129032258064516, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.04838709677419355, 0.22580645161290322, 0.5053763440860215, 0.7419354838709677], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_9.gap.json b/pfam_gap_rates/Fer4_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26a43091187524995f6e4a1d1649a9ac19d28af7
--- /dev/null
+++ b/pfam_gap_rates/Fer4_9.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_9", "n_seqs": 2877, "length": 71, "gap_rates": [0.33229058046576293, 0.035801181786583244, 0.03302050747306222, 0.011817865832464372, 0.0038234271810914148, 0.0013903371567605145, 0.0006951685783802572, 0.0006951685783802572, 0.0006951685783802572, 0.0, 0.004866180048661801, 0.0, 0.9343065693430657, 0.9464720194647201, 0.932568647897115, 0.0, 0.011470281543274244, 0.010775112964893988, 0.007994438651372959, 0.006604101494612443, 0.005213764337851929, 0.0038234271810914148, 0.003475842891901286, 0.003475842891901286, 0.002780674313521029, 0.0024330900243309003, 0.0031282586027111575, 0.0031282586027111575, 0.004171011470281543, 0.004866180048661801, 0.020507473062217587, 0.11087938825165103, 0.2686826555439694, 0.4372610358011818, 0.597149808828641, 0.5940215502259298, 0.6930830726451165, 0.7149808828640946, 0.7879735835940216, 0.851581508515815, 0.8752172401807439, 0.9169273548835593, 0.9391727493917275, 0.943343760862009, 0.9485575251998609, 0.9416058394160584, 0.921793534932221, 0.8974626346889121, 0.8672228015293709, 0.8272506082725061, 0.7525199860966284, 0.6982968369829684, 0.6889120611748349, 0.6287799791449427, 0.08063955509210984, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0003475842891901286, 0.0006951685783802572, 0.0024330900243309003, 0.008689607229753215, 0.03441084462982273, 0.1908237747653806, 0.5099061522419187], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FerI.gap.json b/pfam_gap_rates/FerI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ceaa0813b6bc61b960f051f9966cc60da52df93a
--- /dev/null
+++ b/pfam_gap_rates/FerI.gap.json
@@ -0,0 +1 @@
+{"family": "FerI", "n_seqs": 176, "length": 53, "gap_rates": [0.16477272727272727, 0.0625, 0.056818181818181816, 0.045454545454545456, 0.03977272727272727, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.011363636363636364, 0.005681818181818182, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2784090909090909, 0.3806818181818182, 0.9431818181818182, 0.11363636363636363, 0.017045454545454544, 0.0, 0.005681818181818182, 0.028409090909090908, 0.017045454545454544, 0.07954545454545454, 0.5284090909090909, 0.028409090909090908, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.045454545454545456, 0.23295454545454544], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ferritin.gap.json b/pfam_gap_rates/Ferritin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2dc3271d31996e638786956546f5102d3f69df21
--- /dev/null
+++ b/pfam_gap_rates/Ferritin.gap.json
@@ -0,0 +1 @@
+{"family": "Ferritin", "n_seqs": 3614, "length": 155, "gap_rates": [0.7872163807415606, 0.3010514665190924, 0.1510791366906475, 0.09131156613171001, 0.07858328721638075, 0.07387935805201992, 0.0661317100166021, 0.062257885998893196, 0.06032097399003874, 0.053403431101272825, 0.04897620365246264, 0.0478693967902601, 0.04648588821250692, 0.04454897620365246, 0.042888765910348646, 0.040398450470392915, 0.039568345323741004, 0.0387382401770891, 0.037354731599335916, 0.03680132816823464, 0.032097399003873824, 0.03099059214167128, 0.029883785279468732, 0.029607083563918096, 0.029607083563918096, 0.028223574986164915, 0.8746541228555617, 0.8705035971223022, 0.027946873270614278, 0.02767017155506364, 0.027116768123962368, 0.02684006640841173, 0.027116768123962368, 0.027116768123962368, 0.024903154399557276, 0.026009961261759824, 0.02462645268400664, 0.023519645821804096, 0.01992252351964582, 0.019645821804095187, 0.01936912008854455, 0.019092418372993913, 0.01770890979524073, 0.01853901494189264, 0.018262313226342003, 0.01770890979524073, 0.01770890979524073, 0.01715550636413946, 0.016878804648588822, 0.016602102933038185, 0.016048699501936912, 0.015771997786386275, 0.016048699501936912, 0.016048699501936912, 0.01549529607083564, 0.01466519092418373, 0.014941892639734366, 0.014388489208633094, 0.014941892639734366, 0.014941892639734366, 0.01466519092418373, 0.015218594355285003, 0.31101272827891535, 0.3040951853901494, 0.30132816823464303, 0.30049806308799115, 0.3002213613724405, 0.018815716657443277, 0.018815716657443277, 0.02075262866629773, 0.02324294410625346, 0.02407304925290537, 0.02213613724405091, 0.7169341449916989, 0.8804648588821251, 0.9377421140011069, 0.7340896513558384, 0.6995019369120089, 0.04537908135030437, 0.32263420033204204, 0.308245711123409, 0.30077476480354176, 0.2772551189817377, 0.2327061427780852, 0.7000553403431101, 0.9244604316546763, 0.8198671831765357, 0.43635860542335364, 0.24211400110680686, 0.03541781959048146, 0.6546762589928058, 0.01936912008854455, 0.019092418372993913, 0.018262313226342003, 0.017985611510791366, 0.016602102933038185, 0.01466519092418373, 0.014941892639734366, 0.015218594355285003, 0.015218594355285003, 0.01466519092418373, 0.014388489208633094, 0.01466519092418373, 0.015218594355285003, 0.01549529607083564, 0.015218594355285003, 0.01549529607083564, 0.015218594355285003, 0.01549529607083564, 0.015771997786386275, 0.016048699501936912, 0.01632540121748755, 0.01853901494189264, 0.019092418372993913, 0.019645821804095187, 0.01853901494189264, 0.01992252351964582, 0.01992252351964582, 0.020475926950747094, 0.037354731599335916, 0.04537908135030437, 0.16380741560597675, 0.027116768123962368, 0.024903154399557276, 0.023796347537354733, 0.024903154399557276, 0.024903154399557276, 0.025179856115107913, 0.026009961261759824, 0.027116768123962368, 0.8680132816823465, 0.027946873270614278, 0.02850027670171555, 0.02933038184836746, 0.030437188710570006, 0.03126729385722191, 0.03154399557277255, 0.03182069728832319, 0.0326508024349751, 0.03320420586607637, 0.03403431101272828, 0.034864416159380185, 0.03514111787493082, 0.03514111787493082, 0.035694521306032095, 0.052296624239070284, 0.061427780852241286, 0.09463198671831766, 0.13641394576646376, 0.22053126729385722, 0.3574986164914222, 0.4651355838406198, 0.5442722744881018, 0.6242390702822358, 0.8503043718871057], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FhuF.gap.json b/pfam_gap_rates/FhuF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c4bfb7123b2a5b5567639f12aafc1185eb3bd852
--- /dev/null
+++ b/pfam_gap_rates/FhuF.gap.json
@@ -0,0 +1 @@
+{"family": "FhuF", "n_seqs": 561, "length": 193, "gap_rates": [0.8110516934046346, 0.21746880570409982, 0.13368983957219252, 0.12121212121212122, 0.10873440285204991, 0.10338680926916222, 0.09803921568627451, 0.09090909090909091, 0.0873440285204991, 0.0873440285204991, 0.08377896613190731, 0.08377896613190731, 0.08377896613190731, 0.0873440285204991, 0.08199643493761141, 0.08199643493761141, 0.08199643493761141, 0.08021390374331551, 0.0570409982174688, 0.06060606060606061, 0.0855614973262032, 0.05525846702317291, 0.0481283422459893, 0.04634581105169341, 0.044563279857397504, 0.044563279857397504, 0.044563279857397504, 0.044563279857397504, 0.044563279857397504, 0.044563279857397504, 0.0481283422459893, 0.049910873440285206, 0.044563279857397504, 0.044563279857397504, 0.04634581105169341, 0.0481283422459893, 0.05169340463458111, 0.05169340463458111, 0.05169340463458111, 0.8948306595365418, 0.6221033868092691, 0.0481283422459893, 0.05169340463458111, 0.05525846702317291, 0.0855614973262032, 0.06951871657754011, 0.05169340463458111, 0.0481283422459893, 0.0481283422459893, 0.049910873440285206, 0.04634581105169341, 0.04634581105169341, 0.6327985739750446, 0.15151515151515152, 0.19607843137254902, 0.20320855614973263, 0.5686274509803921, 0.6221033868092691, 0.8787878787878788, 0.8181818181818182, 0.6060606060606061, 0.5062388591800356, 0.31907308377896615, 0.3404634581105169, 0.3244206773618538, 0.3048128342245989, 0.19964349376114082, 0.16755793226381463, 0.1622103386809269, 0.1497326203208556, 0.1443850267379679, 0.13368983957219252, 0.13368983957219252, 0.1140819964349376, 0.12121212121212122, 0.11764705882352941, 0.8270944741532977, 0.2620320855614973, 0.22994652406417113, 0.2103386809269162, 0.21390374331550802, 0.18538324420677363, 0.8235294117647058, 0.9055258467023173, 0.9215686274509803, 0.9144385026737968, 0.8805704099821747, 0.7700534759358288, 0.1140819964349376, 0.0784313725490196, 0.05169340463458111, 0.040998217468805706, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.0285204991087344, 0.03208556149732621, 0.044563279857397504, 0.8270944741532977, 0.42602495543672014, 0.29590017825311943, 0.058823529411764705, 0.030303030303030304, 0.0213903743315508, 0.0142602495543672, 0.0142602495543672, 0.012477718360071301, 0.012477718360071301, 0.012477718360071301, 0.012477718360071301, 0.012477718360071301, 0.012477718360071301, 0.0142602495543672, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.017825311942959002, 0.017825311942959002, 0.10338680926916222, 0.08912655971479501, 0.0855614973262032, 0.053475935828877004, 0.0374331550802139, 0.040998217468805706, 0.0285204991087344, 0.0285204991087344, 0.0285204991087344, 0.0285204991087344, 0.030303030303030304, 0.03208556149732621, 0.03208556149732621, 0.0338680926916221, 0.0338680926916221, 0.0338680926916221, 0.035650623885918005, 0.0374331550802139, 0.0427807486631016, 0.04634581105169341, 0.05525846702317291, 0.0659536541889483, 0.06951871657754011, 0.0766488413547237, 0.0784313725490196, 0.0766488413547237, 0.8770053475935828, 0.9376114081996435, 0.9073083778966132, 0.8235294117647058, 0.25133689839572193, 0.19429590017825313, 0.1746880570409982, 0.15151515151515152, 0.17825311942959002, 0.16755793226381463, 0.1568627450980392, 0.1497326203208556, 0.8163992869875223, 0.8698752228163993, 0.9180035650623886, 0.9411764705882353, 0.8983957219251337, 0.8360071301247772, 0.7843137254901961, 0.2192513368983957, 0.19607843137254902, 0.1746880570409982, 0.14616755793226383, 0.14616755793226383, 0.15508021390374332, 0.15151515151515152, 0.15508021390374332, 0.1657754010695187, 0.1657754010695187, 0.8894830659536542, 0.6131907308377896, 0.1836007130124777, 0.19607843137254902, 0.20499108734402852, 0.2103386809269162, 0.21212121212121213, 0.946524064171123, 0.9376114081996435, 0.5115864527629234, 0.24955436720142601, 0.25846702317290554, 0.27807486631016043, 0.32085561497326204, 0.3761140819964349, 0.4563279857397504, 0.4919786096256685, 0.5418894830659536, 0.6363636363636364, 0.9162210338680927], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fic_N.gap.json b/pfam_gap_rates/Fic_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..813484ca2228f84f1c32fa7b8b94d3bae4456225
--- /dev/null
+++ b/pfam_gap_rates/Fic_N.gap.json
@@ -0,0 +1 @@
+{"family": "Fic_N", "n_seqs": 434, "length": 86, "gap_rates": [0.8110599078341014, 0.43317972350230416, 0.15668202764976957, 0.07834101382488479, 0.03456221198156682, 0.03225806451612903, 0.02534562211981567, 0.02534562211981567, 0.02534562211981567, 0.02534562211981567, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.020737327188940093, 0.020737327188940093, 0.020737327188940093, 0.02304147465437788, 0.020737327188940093, 0.02304147465437788, 0.02304147465437788, 0.03686635944700461, 0.02534562211981567, 0.02304147465437788, 0.02534562211981567, 0.02304147465437788, 0.016129032258064516, 0.016129032258064516, 0.013824884792626729, 0.0069124423963133645, 0.004608294930875576, 0.002304147465437788, 0.002304147465437788, 0.0, 0.0, 0.0, 0.0, 0.002304147465437788, 0.002304147465437788, 0.002304147465437788, 0.002304147465437788, 0.002304147465437788, 0.002304147465437788, 0.002304147465437788, 0.002304147465437788, 0.002304147465437788, 0.002304147465437788, 0.004608294930875576, 0.004608294930875576, 0.0069124423963133645, 0.0069124423963133645, 0.0069124423963133645, 0.0069124423963133645, 0.01152073732718894, 0.01152073732718894, 0.013824884792626729, 0.013824884792626729, 0.018433179723502304, 0.02534562211981567, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.08525345622119816, 0.12903225806451613, 0.8594470046082949, 0.9193548387096774, 0.8940092165898618, 0.6612903225806451, 0.2465437788018433, 0.03225806451612903, 0.03225806451612903, 0.03456221198156682, 0.03456221198156682, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03917050691244239, 0.04377880184331797, 0.05069124423963134, 0.052995391705069124, 0.08064516129032258, 0.09216589861751152, 0.15207373271889402, 0.5483870967741935], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FixO.gap.json b/pfam_gap_rates/FixO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92fdc2f392b6569200ac86eca7d9b0be6cf7a179
--- /dev/null
+++ b/pfam_gap_rates/FixO.gap.json
@@ -0,0 +1 @@
+{"family": "FixO", "n_seqs": 598, "length": 234, "gap_rates": [0.31270903010033446, 0.24749163879598662, 0.21237458193979933, 0.18896321070234115, 0.18227424749163879, 0.17558528428093645, 0.15384615384615385, 0.1488294314381271, 0.14214046822742474, 0.12876254180602006, 0.12374581939799331, 0.11872909698996656, 0.11538461538461539, 0.11036789297658862, 0.1020066889632107, 0.10033444816053512, 0.09531772575250837, 0.09197324414715718, 0.0903010033444816, 0.0903010033444816, 0.0903010033444816, 0.08862876254180602, 0.09531772575250837, 0.0903010033444816, 0.08695652173913043, 0.09197324414715718, 0.08361204013377926, 0.08193979933110368, 0.08193979933110368, 0.08361204013377926, 0.08193979933110368, 0.0802675585284281, 0.1505016722408027, 0.13712374581939799, 0.08361204013377926, 0.08361204013377926, 0.08528428093645485, 0.07190635451505016, 0.07190635451505016, 0.06521739130434782, 0.061872909698996656, 0.06020066889632107, 0.06354515050167224, 0.056856187290969896, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Flagellin_C.gap.json b/pfam_gap_rates/Flagellin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..582c29bc47692f3268d73e1c9bf5dbc9dae33462
--- /dev/null
+++ b/pfam_gap_rates/Flagellin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Flagellin_C", "n_seqs": 2402, "length": 86, "gap_rates": [0.7951706910907577, 0.30308076602830974, 0.16611157368859283, 0.10324729392173189, 0.07868442964196502, 0.06661115736885928, 0.0578684429641965, 0.05120732722731058, 0.03996669442131557, 0.0324729392173189, 0.027060782681099085, 0.024562864279766863, 0.018734388009991675, 0.017485428809325562, 0.017485428809325562, 0.017485428809325562, 0.01582014987510408, 0.015403830141548709, 0.014571190674437969, 0.014571190674437969, 0.014571190674437969, 0.014571190674437969, 0.014571190674437969, 0.013738551207327226, 0.013322231473771857, 0.013322231473771857, 0.012073272273105746, 0.012489592006661115, 0.010824313072439634, 0.011240632805995004, 0.012489592006661115, 0.011656952539550375, 0.011240632805995004, 0.012073272273105746, 0.012073272273105746, 0.011240632805995004, 0.010824313072439634, 0.010824313072439634, 0.011656952539550375, 0.010407993338884263, 0.010407993338884263, 0.009991673605328892, 0.009575353871773521, 0.009575353871773521, 0.009575353871773521, 0.009991673605328892, 0.009159034138218152, 0.009159034138218152, 0.008742714404662781, 0.008742714404662781, 0.0033305578684429643, 0.003746877601998335, 0.003746877601998335, 0.004163197335553705, 0.009575353871773521, 0.009991673605328892, 0.009991673605328892, 0.009991673605328892, 0.009991673605328892, 0.010407993338884263, 0.010824313072439634, 0.010824313072439634, 0.010824313072439634, 0.011656952539550375, 0.012073272273105746, 0.013322231473771857, 0.013322231473771857, 0.013738551207327226, 0.013322231473771857, 0.014571190674437969, 0.01498751040799334, 0.01665278934221482, 0.017485428809325562, 0.017901748542880933, 0.020399666944213156, 0.026644462947543714, 0.027477102414654453, 0.027893422148209824, 0.27185678601165697, 0.2722731057452123, 0.034970857618651124, 0.0395503746877602, 0.04537885095753539, 0.05203996669442131, 0.059533721898417984, 0.12156536219816819], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flagellin_N.gap.json b/pfam_gap_rates/Flagellin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b41cfe75512a667a5ad6cbd609974e2c7eb2a0be
--- /dev/null
+++ b/pfam_gap_rates/Flagellin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Flagellin_N", "n_seqs": 2667, "length": 140, "gap_rates": [0.3340832395950506, 0.2647169103862017, 0.20622422197225346, 0.18335208098987626, 0.15898012748406448, 0.14023247094113236, 0.12260967379077616, 0.10948631421072366, 0.08511436070491189, 0.07349081364829396, 0.06299212598425197, 0.051368578927634044, 0.046494188226471694, 0.04236970378702662, 0.03749531308586427, 0.03524559430071241, 0.031121109861267343, 0.029996250468691414, 0.028871391076115485, 0.0281214848143982, 0.025871766029246346, 0.025871766029246346, 0.025871766029246346, 0.025871766029246346, 0.025121859767529058, 0.024371953505811773, 0.023247094113235847, 0.02099737532808399, 0.02099737532808399, 0.022872140982377203, 0.022122234720659918, 0.02099737532808399, 0.01987251593550806, 0.019122609673790775, 0.01949756280464942, 0.01987251593550806, 0.01949756280464942, 0.01949756280464942, 0.018747656542932135, 0.01799775028121485, 0.01724784401949756, 0.015748031496062992, 0.015748031496062992, 0.01537307836520435, 0.014248218972628422, 0.016122984626921636, 0.01537307836520435, 0.01537307836520435, 0.014998125234345707, 0.011623547056617924, 0.011623547056617924, 0.011623547056617924, 0.011623547056617924, 0.011623547056617924, 0.010873640794900637, 0.010498687664041995, 0.010498687664041995, 0.01124859392575928, 0.010873640794900637, 0.010873640794900637, 0.01124859392575928, 0.010873640794900637, 0.010873640794900637, 0.01124859392575928, 0.01124859392575928, 0.01124859392575928, 0.01124859392575928, 0.01124859392575928, 0.011998500187476566, 0.011998500187476566, 0.01124859392575928, 0.01124859392575928, 0.011998500187476566, 0.011998500187476566, 0.01124859392575928, 0.011623547056617924, 0.011623547056617924, 0.011623547056617924, 0.011623547056617924, 0.011623547056617924, 0.011998500187476566, 0.011998500187476566, 0.011623547056617924, 0.01124859392575928, 0.01124859392575928, 0.010873640794900637, 0.01124859392575928, 0.00974878140232471, 0.010123734533183352, 0.010498687664041995, 0.010498687664041995, 0.01124859392575928, 0.01124859392575928, 0.010498687664041995, 0.010123734533183352, 0.010873640794900637, 0.010123734533183352, 0.011623547056617924, 0.010873640794900637, 0.014248218972628422, 0.08061492313460818, 0.0719910011248594, 0.06374203224596925, 0.9298837645294338, 0.03562054743157105, 0.01949756280464942, 0.01837270341207349, 0.01799775028121485, 0.017622797150356206, 0.017622797150356206, 0.019122609673790775, 0.02099737532808399, 0.022122234720659918, 0.023622047244094488, 0.023997000374953132, 0.0254968128983877, 0.026246719160104987, 0.02662167229096363, 0.027746531683539556, 0.027746531683539556, 0.027746531683539556, 0.12373453318335208, 0.09898762654668167, 0.09111361079865017, 0.0922384701912261, 0.15710536182977128, 0.0562429696287964, 0.04161979752530934, 0.0386201724784402, 0.0386201724784402, 0.03974503187101612, 0.0386201724784402, 0.04086989126359205, 0.04349456317960255, 0.047994000749906264, 0.05774278215223097, 0.11473565804274466, 0.21597300337457817, 0.6700412448443944, 0.8185226846644169], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flavoprotein.gap.json b/pfam_gap_rates/Flavoprotein.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57a4c74831de9b85c04c1f546289374b2985bd3f
--- /dev/null
+++ b/pfam_gap_rates/Flavoprotein.gap.json
@@ -0,0 +1 @@
+{"family": "Flavoprotein", "n_seqs": 3458, "length": 249, "gap_rates": [0.5150375939849624, 0.14806246385193753, 0.07316367842683633, 0.06015037593984962, 0.05292076344707924, 0.04887218045112782, 0.044534412955465584, 0.041353383458646614, 0.04019664545980335, 0.039039907460960095, 0.039039907460960095, 0.038172353961827644, 0.03788316946211683, 0.03701561596298438, 0.0373048004626952, 0.03614806246385194, 0.9054366685945633, 0.03672643146327357, 0.035858877964141125, 0.0335454019664546, 0.03325621746674378, 0.03267784846732215, 0.03267784846732215, 0.03296703296703297, 0.03296703296703297, 0.03470213996529786, 0.9459224985540775, 0.8441295546558705, 0.08270676691729323, 0.041931752458068246, 0.04048582995951417, 0.038172353961827644, 0.028629265471370735, 0.02834008097165992, 0.028050896471949104, 0.027183342972816656, 0.02515905147484095, 0.02515905147484095, 0.02515905147484095, 0.02515905147484095, 0.02515905147484095, 0.024869866975130134, 0.024869866975130134, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FlgD_ig.gap.json b/pfam_gap_rates/FlgD_ig.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b0865481692ccc2090020c4e79e994d0b584e452
--- /dev/null
+++ b/pfam_gap_rates/FlgD_ig.gap.json
@@ -0,0 +1 @@
+{"family": "FlgD_ig", "n_seqs": 1251, "length": 79, "gap_rates": [0.9456434852118305, 0.9216626698641087, 0.9072741806554756, 0.9320543565147882, 0.9272581934452439, 0.86810551558753, 0.7617905675459632, 0.7074340527577938, 0.657074340527578, 0.6123101518784972, 0.5651478816946442, 0.4924060751398881, 0.442845723421263, 0.37729816147082335, 0.33892885691446845, 0.3229416466826539, 0.5763389288569145, 0.5571542765787371, 0.2765787370103917, 0.24700239808153476, 0.21742605915267785, 0.1950439648281375, 0.17026378896882494, 0.1278976818545164, 0.25819344524380494, 0.045563549160671464, 0.01838529176658673, 0.015187849720223821, 0.011191047162270184, 0.011191047162270184, 0.007993605115907274, 0.010391686650679457, 0.007993605115907274, 0.004796163069544364, 0.005595523581135092, 0.004796163069544364, 0.003996802557953637, 0.019184652278177457, 0.004796163069544364, 0.004796163069544364, 0.004796163069544364, 0.02877697841726619, 0.010391686650679457, 0.05195843325339728, 0.017585931254996003, 0.01838529176658673, 0.007194244604316547, 0.005595523581135092, 0.06554756195043965, 0.055955235811350916, 0.03677058353317346, 0.0015987210231814548, 0.0, 0.0, 0.0, 0.0007993605115907274, 0.037569944044764186, 0.03437250199840128, 0.03357314148681055, 0.02717825739408473, 0.020783373301358914, 0.023181454836131096, 0.020783373301358914, 0.03597122302158273, 0.027977617905675458, 0.025579536370903277, 0.02158273381294964, 0.019984012789768184, 0.01838529176658673, 0.016786570743405275, 0.051159072741806554, 0.07993605115907274, 0.0991207034372502, 0.13269384492406075, 0.18305355715427657, 0.2821742605915268, 0.4548361310951239, 0.6730615507593924, 0.8169464428457234], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliH.gap.json b/pfam_gap_rates/FliH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a32a11b08d6a8c133e32d87267056c89d7901f91
--- /dev/null
+++ b/pfam_gap_rates/FliH.gap.json
@@ -0,0 +1 @@
+{"family": "FliH", "n_seqs": 795, "length": 140, "gap_rates": [0.8238993710691824, 0.6452830188679245, 0.45660377358490567, 0.32955974842767294, 0.26163522012578616, 0.19622641509433963, 0.16729559748427672, 0.14339622641509434, 0.11823899371069183, 0.09433962264150944, 0.07547169811320754, 0.07169811320754717, 0.06540880503144654, 0.06289308176100629, 0.05911949685534591, 0.05660377358490566, 0.05660377358490566, 0.050314465408805034, 0.04779874213836478, 0.04654088050314465, 0.9446540880503145, 0.9471698113207547, 0.9433962264150944, 0.03647798742138365, 0.027672955974842768, 0.02389937106918239, 0.9333333333333333, 0.9333333333333333, 0.9320754716981132, 0.02012578616352201, 0.02012578616352201, 0.01761006289308176, 0.01761006289308176, 0.016352201257861635, 0.01509433962264151, 0.013836477987421384, 0.013836477987421384, 0.013836477987421384, 0.013836477987421384, 0.013836477987421384, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.01509433962264151, 0.016352201257861635, 0.027672955974842768, 0.02389937106918239, 0.031446540880503145, 0.031446540880503145, 0.03522012578616352, 0.027672955974842768, 0.025157232704402517, 0.018867924528301886, 0.012578616352201259, 0.011320754716981131, 0.006289308176100629, 0.005031446540880503, 0.005031446540880503, 0.005031446540880503, 0.0037735849056603774, 0.005031446540880503, 0.005031446540880503, 0.005031446540880503, 0.620125786163522, 0.02389937106918239, 0.012578616352201259, 0.011320754716981131, 0.011320754716981131, 0.00880503144654088, 0.007547169811320755, 0.006289308176100629, 0.005031446540880503, 0.0037735849056603774, 0.0025157232704402514, 0.0025157232704402514, 0.0025157232704402514, 0.0025157232704402514, 0.0025157232704402514, 0.0025157232704402514, 0.0025157232704402514, 0.0025157232704402514, 0.0037735849056603774, 0.0025157232704402514, 0.005031446540880503, 0.005031446540880503, 0.006289308176100629, 0.00880503144654088, 0.007547169811320755, 0.007547169811320755, 0.010062893081761006, 0.9371069182389937, 0.8402515723270441, 0.19622641509433963, 0.1610062893081761, 0.09182389937106918, 0.05660377358490566, 0.06289308176100629, 0.052830188679245285, 0.05157232704402516, 0.016352201257861635, 0.5031446540880503, 0.5836477987421383, 0.9119496855345912, 0.5358490566037736, 0.47044025157232705, 0.011320754716981131, 0.012578616352201259, 0.012578616352201259, 0.00880503144654088, 0.010062893081761006, 0.011320754716981131, 0.010062893081761006, 0.011320754716981131, 0.00880503144654088, 0.010062893081761006, 0.010062893081761006, 0.01509433962264151, 0.010062893081761006, 0.010062893081761006, 0.011320754716981131, 0.013836477987421384, 0.01509433962264151, 0.01761006289308176, 0.02012578616352201, 0.022641509433962263, 0.027672955974842768, 0.03522012578616352, 0.0729559748427673, 0.09685534591194969, 0.09811320754716982, 0.10314465408805032, 0.11069182389937107, 0.1320754716981132, 0.14842767295597484, 0.1559748427672956, 0.18364779874213835, 0.3132075471698113, 0.7295597484276729], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliJ.gap.json b/pfam_gap_rates/FliJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bcdd2fbbde9eea157efef5be756242e1a70ac36d
--- /dev/null
+++ b/pfam_gap_rates/FliJ.gap.json
@@ -0,0 +1 @@
+{"family": "FliJ", "n_seqs": 695, "length": 125, "gap_rates": [0.5928057553956835, 0.3712230215827338, 0.26762589928057556, 0.19136690647482013, 0.16258992805755396, 0.1237410071942446, 0.07194244604316546, 0.053237410071942444, 0.04028776978417266, 0.03884892086330935, 0.03884892086330935, 0.03741007194244604, 0.03741007194244604, 0.034532374100719423, 0.034532374100719423, 0.031654676258992806, 0.02877697841726619, 0.027338129496402876, 0.027338129496402876, 0.025899280575539568, 0.025899280575539568, 0.025899280575539568, 0.025899280575539568, 0.02446043165467626, 0.02446043165467626, 0.02446043165467626, 0.02446043165467626, 0.025899280575539568, 0.02446043165467626, 0.02302158273381295, 0.02158273381294964, 0.03597122302158273, 0.033093525179856115, 0.033093525179856115, 0.02877697841726619, 0.031654676258992806, 0.025899280575539568, 0.02877697841726619, 0.04460431654676259, 0.4158273381294964, 0.2474820143884892, 0.7683453237410072, 0.2, 0.1712230215827338, 0.12661870503597122, 0.08776978417266187, 0.02014388489208633, 0.015827338129496403, 0.012949640287769784, 0.011510791366906475, 0.011510791366906475, 0.011510791366906475, 0.010071942446043165, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.0057553956834532375, 0.0057553956834532375, 0.0057553956834532375, 0.0057553956834532375, 0.0057553956834532375, 0.004316546762589928, 0.0028776978417266188, 0.0028776978417266188, 0.0028776978417266188, 0.004316546762589928, 0.004316546762589928, 0.004316546762589928, 0.004316546762589928, 0.0028776978417266188, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0014388489208633094, 0.0028776978417266188, 0.004316546762589928, 0.004316546762589928, 0.004316546762589928, 0.0057553956834532375, 0.0057553956834532375, 0.0057553956834532375, 0.0057553956834532375, 0.0057553956834532375, 0.0057553956834532375, 0.0057553956834532375, 0.007194244604316547, 0.008633093525179856, 0.010071942446043165, 0.010071942446043165, 0.011510791366906475, 0.011510791366906475, 0.011510791366906475, 0.011510791366906475, 0.012949640287769784, 0.015827338129496403, 0.017266187050359712, 0.017266187050359712, 0.017266187050359712, 0.02302158273381295, 0.02877697841726619, 0.033093525179856115, 0.041726618705035974, 0.0618705035971223, 0.08489208633093526, 0.17410071942446043, 0.33525179856115106, 0.5884892086330935], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliL.gap.json b/pfam_gap_rates/FliL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46856b208b1e552e142e1ee669bdfb326eb33be7
--- /dev/null
+++ b/pfam_gap_rates/FliL.gap.json
@@ -0,0 +1 @@
+{"family": "FliL", "n_seqs": 963, "length": 115, "gap_rates": [0.5877466251298027, 0.31568016614745587, 0.2222222222222222, 0.15991692627206647, 0.3052959501557632, 0.11838006230529595, 0.5327102803738317, 0.06645898234683281, 0.059190031152647975, 0.05088265835929388, 0.04776739356178609, 0.04569055036344756, 0.5410176531671859, 0.5368639667705088, 0.09968847352024922, 0.17445482866043613, 0.13811007268951195, 0.142263759086189, 0.46313603322949115, 0.3426791277258567, 0.040498442367601244, 0.023883696780893044, 0.017653167185877467, 0.014537902388369679, 0.014537902388369679, 0.010384215991692628, 0.009345794392523364, 0.006230529595015576, 0.006230529595015576, 0.006230529595015576, 0.005192107995846314, 0.8120456905503635, 0.9252336448598131, 0.8909657320872274, 0.7227414330218068, 0.006230529595015576, 0.07165109034267912, 0.058151609553478714, 0.04153686396677051, 0.032191069574247146, 0.02284527518172378, 0.040498442367601244, 0.05088265835929388, 0.30218068535825543, 0.12980269989615784, 0.07061266874350987, 0.036344755970924195, 0.9065420560747663, 0.9356178608515057, 0.9428868120456906, 0.9293873312564901, 0.885773624091381, 0.0020768431983385254, 0.0020768431983385254, 0.0020768431983385254, 0.0020768431983385254, 0.0020768431983385254, 0.0020768431983385254, 0.0020768431983385254, 0.004153686396677051, 0.003115264797507788, 0.0020768431983385254, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.006230529595015576, 0.006230529595015576, 0.006230529595015576, 0.030114226375908618, 0.07372793354101766, 0.033229491173416406, 0.014537902388369679, 0.007268951194184839, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.0020768431983385254, 0.0010384215991692627, 0.0010384215991692627, 0.0010384215991692627, 0.005192107995846314, 0.23156801661474558, 0.24195223260643822, 0.8535825545171339, 0.30218068535825543, 0.3125649013499481, 0.6448598130841121, 0.304257528556594, 0.37175493250259606, 0.3229491173416407, 0.3063343717549325, 0.24402907580477673, 0.23468328141225336, 0.005192107995846314, 0.005192107995846314, 0.006230529595015576, 0.006230529595015576, 0.008307372793354102, 0.01142263759086189, 0.01557632398753894, 0.020768431983385256, 0.030114226375908618, 0.06438213914849429, 0.14330218068535824, 0.24610591900311526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliO.gap.json b/pfam_gap_rates/FliO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..979320bda7855bc135cd6764a9ee2c7bbee510ba
--- /dev/null
+++ b/pfam_gap_rates/FliO.gap.json
@@ -0,0 +1 @@
+{"family": "FliO", "n_seqs": 751, "length": 120, "gap_rates": [0.5392809587217043, 0.45006657789613846, 0.3941411451398136, 0.36351531291611183, 0.33155792276964047, 0.9027962716378163, 0.9440745672436751, 0.8681757656458056, 0.7603195739014648, 0.5432756324900133, 0.5472703062583223, 0.5006657789613849, 0.3848202396804261, 0.28495339547270304, 0.23568575233022637, 0.2237017310252996, 0.16910785619174434, 0.10918774966711052, 0.05326231691078562, 0.03195739014647137, 0.02130492676431425, 0.018641810918774968, 0.013315579227696404, 0.010652463382157125, 0.007989347536617843, 0.007989347536617843, 0.006657789613848202, 0.006657789613848202, 0.006657789613848202, 0.006657789613848202, 0.005326231691078562, 0.005326231691078562, 0.005326231691078562, 0.005326231691078562, 0.006657789613848202, 0.005326231691078562, 0.005326231691078562, 0.005326231691078562, 0.0039946737683089215, 0.0039946737683089215, 0.0039946737683089215, 0.002663115845539281, 0.002663115845539281, 0.8868175765645806, 0.8748335552596538, 0.002663115845539281, 0.0039946737683089215, 0.0013315579227696406, 0.0013315579227696406, 0.0, 0.0, 0.0, 0.0013315579227696406, 0.005326231691078562, 0.0039946737683089215, 0.011984021304926764, 0.20372836218375498, 0.017310252996005325, 0.018641810918774968, 0.02130492676431425, 0.02796271637816245, 0.02796271637816245, 0.03062583222370173, 0.043941411451398134, 0.047936085219707054, 0.2809587217043941, 0.2569906790945406, 0.2609853528628495, 0.26764314247669774, 0.2756324900133156, 0.14913448735019974, 0.1611185086551265, 0.1810918774966711, 0.1904127829560586, 0.21438082556591212, 0.2822902796271638, 0.3195739014647137, 0.35019973368841545, 0.3595206391478029, 0.3754993342210386, 0.4007989347536618, 0.4367509986684421, 0.47003994673768307, 0.5725699067909454, 0.5193075898801598, 0.7390146471371505, 0.800266311584554, 0.8521970705725699, 0.881491344873502, 0.8908122503328895, 0.8988015978695073, 0.9014647137150466, 0.9041278295605859, 0.9134487350199734, 0.918774966711052, 0.9267643142476698, 0.9400798934753661, 0.9467376830892144, 0.9440745672436751, 0.929427430093209, 0.9241011984021305, 0.9161118508655126, 0.9041278295605859, 0.9027962716378163, 0.9001331557922769, 0.8921438082556591, 0.8854860186418109, 0.8681757656458056, 0.8255659121171771, 0.7656458055925432, 0.7177097203728362, 0.37283621837549935, 0.3941411451398136, 0.3994673768308921, 0.4047936085219707, 0.40878828229027964, 0.43142476697736354, 0.48601864181091875, 0.5712383488681758, 0.7403462050599201], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliT.gap.json b/pfam_gap_rates/FliT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..991b99b395ce514fec02db3eafe7688d07a97f82
--- /dev/null
+++ b/pfam_gap_rates/FliT.gap.json
@@ -0,0 +1 @@
+{"family": "FliT", "n_seqs": 166, "length": 93, "gap_rates": [0.25301204819277107, 0.13855421686746988, 0.0963855421686747, 0.06626506024096386, 0.060240963855421686, 0.04819277108433735, 0.04819277108433735, 0.03614457831325301, 0.03614457831325301, 0.030120481927710843, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.8855421686746988, 0.927710843373494, 0.9457831325301205, 0.9036144578313253, 0.45180722891566266, 0.3614457831325301, 0.3253012048192771, 0.27710843373493976, 0.1566265060240964, 0.13253012048192772, 0.10843373493975904, 0.09036144578313253, 0.08433734939759036, 0.04819277108433735, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.0, 0.9156626506024096, 0.9397590361445783, 0.9156626506024096, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.0, 0.0, 0.0, 0.0, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.024096385542168676, 0.030120481927710843, 0.030120481927710843, 0.04819277108433735, 0.1144578313253012, 0.1566265060240964, 0.16265060240963855, 0.1686746987951807, 0.19879518072289157, 0.21084337349397592, 0.2289156626506024, 0.2289156626506024, 0.23493975903614459, 0.2469879518072289, 0.25301204819277107, 0.25301204819277107, 0.25903614457831325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flp1_like.gap.json b/pfam_gap_rates/Flp1_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b676b26c91fcd9756eb6fdb52a52dd402e3122a
--- /dev/null
+++ b/pfam_gap_rates/Flp1_like.gap.json
@@ -0,0 +1 @@
+{"family": "Flp1_like", "n_seqs": 142, "length": 50, "gap_rates": [0.5140845070422535, 0.1619718309859155, 0.08450704225352113, 0.06338028169014084, 0.035211267605633804, 0.035211267605633804, 0.02112676056338028, 0.014084507042253521, 0.9436619718309859, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.02112676056338028, 0.02112676056338028, 0.028169014084507043, 0.07042253521126761, 0.1056338028169014, 0.16901408450704225, 0.21830985915492956, 0.9084507042253521], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FlpD.gap.json b/pfam_gap_rates/FlpD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f09cafbddca420f2512c98a2f8fa5dd88df8ae65
--- /dev/null
+++ b/pfam_gap_rates/FlpD.gap.json
@@ -0,0 +1 @@
+{"family": "FlpD", "n_seqs": 619, "length": 127, "gap_rates": [0.22778675282714056, 0.15993537964458804, 0.15024232633279483, 0.14862681744749595, 0.14862681744749595, 0.15508885298869143, 0.1470113085621971, 0.1470113085621971, 0.14539579967689822, 0.14378029079159935, 0.14539579967689822, 0.14378029079159935, 0.13893376413570274, 0.13731825525040386, 0.13731825525040386, 0.13247172859450726, 0.13570274636510501, 0.13731825525040386, 0.1518578352180937, 0.14054927302100162, 0.11147011308562198, 0.10016155088852989, 0.09693053311793215, 0.09046849757673667, 0.09046849757673667, 0.07431340872374798, 0.09046849757673667, 0.06623586429725363, 0.0630048465266559, 0.05977382875605816, 0.05654281098546042, 0.05492730210016155, 0.050080775444264945, 0.033925686591276254, 0.033925686591276254, 0.033925686591276254, 0.033925686591276254, 0.033925686591276254, 0.03231017770597738, 0.03231017770597738, 0.03231017770597738, 0.03231017770597738, 0.030694668820678513, 0.030694668820678513, 0.029079159935379646, 0.029079159935379646, 0.029079159935379646, 0.029079159935379646, 0.030694668820678513, 0.029079159935379646, 0.030694668820678513, 0.029079159935379646, 0.030694668820678513, 0.030694668820678513, 0.030694668820678513, 0.030694668820678513, 0.030694668820678513, 0.03715670436187399, 0.029079159935379646, 0.06785137318255251, 0.06785137318255251, 0.09854604200323101, 0.07431340872374798, 0.07108239095315025, 0.8626817447495961, 0.8626817447495961, 0.8610662358642972, 0.07592891760904685, 0.07592891760904685, 0.07592891760904685, 0.10016155088852989, 0.9466882067851373, 0.08239095315024232, 0.08077544426494346, 0.0791599353796446, 0.07269789983844911, 0.07269789983844911, 0.07269789983844911, 0.07269789983844911, 0.07108239095315025, 0.07108239095315025, 0.06623586429725363, 0.061389337641357025, 0.061389337641357025, 0.05977382875605816, 0.05654281098546042, 0.05654281098546042, 0.050080775444264945, 0.050080775444264945, 0.050080775444264945, 0.050080775444264945, 0.048465266558966075, 0.048465266558966075, 0.048465266558966075, 0.050080775444264945, 0.08077544426494346, 0.05331179321486268, 0.051696284329563816, 0.05331179321486268, 0.05331179321486268, 0.05331179321486268, 0.05977382875605816, 0.061389337641357025, 0.05815831987075929, 0.0630048465266559, 0.06462035541195477, 0.06623586429725363, 0.06946688206785137, 0.06946688206785137, 0.06946688206785137, 0.06946688206785137, 0.07108239095315025, 0.07108239095315025, 0.07592891760904685, 0.07592891760904685, 0.07754442649434572, 0.07754442649434572, 0.0791599353796446, 0.08077544426494346, 0.0840064620355412, 0.10662358642972536, 0.11954765751211632, 0.12762520193861066, 0.14862681744749595, 0.18578352180936994, 0.2084006462035541, 0.24717285945072698], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FmdE.gap.json b/pfam_gap_rates/FmdE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c507cac80006a3467478e28a4339f6489287b4c
--- /dev/null
+++ b/pfam_gap_rates/FmdE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Fmp27_GFWDK.gap.json b/pfam_gap_rates/Fmp27_GFWDK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11178bda8a313d3582ae83c4af6572a13bffce02
--- /dev/null
+++ b/pfam_gap_rates/Fmp27_GFWDK.gap.json
@@ -0,0 +1 @@
+{"family": "Fmp27_GFWDK", "n_seqs": 265, "length": 168, "gap_rates": [0.24528301886792453, 0.2188679245283019, 0.2188679245283019, 0.2188679245283019, 0.2188679245283019, 0.2188679245283019, 0.21509433962264152, 0.21509433962264152, 0.21509433962264152, 0.2188679245283019, 0.6641509433962264, 0.6792452830188679, 0.6452830188679245, 0.5245283018867924, 0.4830188679245283, 0.4641509433962264, 0.45660377358490567, 0.45660377358490567, 0.44150943396226416, 0.4377358490566038, 0.43018867924528303, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.8188679245283019, 0.21132075471698114, 0.19622641509433963, 0.20754716981132076, 0.19622641509433963, 0.19622641509433963, 0.19622641509433963, 0.19622641509433963, 0.19245283018867926, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.44528301886792454, 0.47547169811320755, 0.47924528301886793, 0.4679245283018868, 0.4679245283018868, 0.4528301886792453, 0.4490566037735849, 0.44528301886792454, 0.7547169811320755, 0.8415094339622642, 0.690566037735849, 0.20754716981132076, 0.17735849056603772, 0.16226415094339622, 0.15849056603773584, 0.15849056603773584, 0.15849056603773584, 0.1509433962264151, 0.1509433962264151, 0.11320754716981132, 0.06792452830188679, 0.06415094339622641, 0.06415094339622641, 0.06415094339622641, 0.052830188679245285, 0.052830188679245285, 0.052830188679245285, 0.052830188679245285, 0.052830188679245285, 0.052830188679245285, 0.052830188679245285, 0.052830188679245285, 0.05660377358490566, 0.05660377358490566, 0.06415094339622641, 0.06415094339622641, 0.06415094339622641, 0.06792452830188679, 0.4377358490566038, 0.4339622641509434, 0.42641509433962266, 0.06415094339622641, 0.06415094339622641, 0.06415094339622641, 0.06037735849056604, 0.06037735849056604, 0.06037735849056604, 0.06037735849056604, 0.06037735849056604, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.052830188679245285, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.04150943396226415, 0.03773584905660377, 0.9283018867924528, 0.9283018867924528, 0.939622641509434, 0.939622641509434, 0.9283018867924528, 0.9283018867924528, 0.03773584905660377, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.033962264150943396, 0.03018867924528302, 0.052830188679245285, 0.022641509433962263, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.03018867924528302, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.03018867924528302, 0.6113207547169811, 0.569811320754717, 0.4188679245283019, 0.06037735849056604, 0.06037735849056604, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.05660377358490566, 0.06037735849056604, 0.06792452830188679, 0.06792452830188679, 0.07169811320754717, 0.06792452830188679, 0.06792452830188679, 0.08679245283018867, 0.5433962264150943], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fn3-like.gap.json b/pfam_gap_rates/Fn3-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a390f67e9aa00f22860ae20b3a9fb26d483cd65
--- /dev/null
+++ b/pfam_gap_rates/Fn3-like.gap.json
@@ -0,0 +1 @@
+{"family": "Fn3-like", "n_seqs": 3344, "length": 75, "gap_rates": [0.20723684210526316, 0.060107655502392346, 0.029904306220095694, 0.022129186602870814, 0.018839712918660288, 0.01674641148325359, 0.01644736842105263, 0.01555023923444976, 0.014354066985645933, 0.013456937799043063, 0.012260765550239234, 0.9398923444976076, 0.9159688995215312, 0.011961722488038277, 0.19258373205741627, 0.08881578947368421, 0.045454545454545456, 0.035586124401913874, 0.009569377990430622, 0.007476076555023923, 0.005083732057416268, 0.004485645933014354, 0.004485645933014354, 0.004186602870813397, 0.003289473684210526, 0.0029904306220095694, 0.003289473684210526, 0.0026913875598086126, 0.0023923444976076554, 0.0017942583732057417, 0.8307416267942583, 0.0017942583732057417, 0.0011961722488038277, 0.0005980861244019139, 0.0005980861244019139, 0.0005980861244019139, 0.0011961722488038277, 0.0008971291866028708, 0.0008971291866028708, 0.0008971291866028708, 0.0008971291866028708, 0.0011961722488038277, 0.0011961722488038277, 0.0020933014354066986, 0.0029904306220095694, 0.0029904306220095694, 0.9004186602870813, 0.0029904306220095694, 0.0035885167464114833, 0.004186602870813397, 0.004784688995215311, 0.005980861244019139, 0.0062799043062200955, 0.005980861244019139, 0.007177033492822967, 0.008373205741626795, 0.30980861244019137, 0.09539473684210527, 0.023923444976076555, 0.023026315789473683, 0.01375598086124402, 0.013456937799043063, 0.014354066985645933, 0.01465311004784689, 0.017045454545454544, 0.017942583732057416, 0.019736842105263157, 0.020035885167464115, 0.021232057416267942, 0.024820574162679427, 0.03588516746411483, 0.05891148325358852, 0.09090909090909091, 0.21561004784688995, 0.4249401913875598], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Focal_AT.gap.json b/pfam_gap_rates/Focal_AT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..329b3307339b785669a1f2f1444fa99dec61674b
--- /dev/null
+++ b/pfam_gap_rates/Focal_AT.gap.json
@@ -0,0 +1 @@
+{"family": "Focal_AT", "n_seqs": 131, "length": 134, "gap_rates": [0.37404580152671757, 0.366412213740458, 0.2748091603053435, 0.2748091603053435, 0.2595419847328244, 0.25190839694656486, 0.24427480916030533, 0.22900763358778625, 0.22137404580152673, 0.22137404580152673, 0.21374045801526717, 0.21374045801526717, 0.19083969465648856, 0.19083969465648856, 0.183206106870229, 0.20610687022900764, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.17557251908396945, 0.17557251908396945, 0.17557251908396945, 0.17557251908396945, 0.17557251908396945, 0.183206106870229, 0.183206106870229, 0.17557251908396945, 0.17557251908396945, 0.183206106870229, 0.19083969465648856, 0.19083969465648856, 0.1984732824427481, 0.9236641221374046, 0.19083969465648856, 0.19083969465648856, 0.19083969465648856, 0.19083969465648856, 0.1984732824427481, 0.1984732824427481, 0.1984732824427481, 0.22137404580152673, 0.24427480916030533, 0.25190839694656486, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.21374045801526717, 0.21374045801526717, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.22137404580152673, 0.2366412213740458, 0.24427480916030533, 0.2366412213740458, 0.22137404580152673, 0.21374045801526717, 0.21374045801526717, 0.20610687022900764, 0.20610687022900764, 0.19083969465648856, 0.19083969465648856, 0.1984732824427481, 0.1984732824427481, 0.2366412213740458, 0.22900763358778625, 0.1984732824427481, 0.19083969465648856, 0.19083969465648856, 0.19083969465648856, 0.19083969465648856, 0.19083969465648856, 0.183206106870229, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.15267175572519084, 0.15267175572519084, 0.15267175572519084, 0.15267175572519084, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16793893129770993, 0.17557251908396945, 0.916030534351145, 0.16793893129770993, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16793893129770993, 0.16030534351145037, 0.16793893129770993, 0.21374045801526717, 0.22900763358778625, 0.22900763358778625, 0.2366412213740458, 0.2366412213740458, 0.2366412213740458, 0.24427480916030533, 0.24427480916030533, 0.24427480916030533, 0.24427480916030533, 0.24427480916030533, 0.24427480916030533, 0.24427480916030533, 0.24427480916030533, 0.24427480916030533, 0.24427480916030533, 0.2595419847328244, 0.2595419847328244, 0.26717557251908397, 0.26717557251908397, 0.2824427480916031, 0.2900763358778626, 0.29770992366412213, 0.29770992366412213, 0.3053435114503817, 0.37404580152671757, 0.5725190839694656], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Folate_carrier.gap.json b/pfam_gap_rates/Folate_carrier.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f71991c7334aa2b532d0fb27468de68fc75740f
--- /dev/null
+++ b/pfam_gap_rates/Folate_carrier.gap.json
@@ -0,0 +1 @@
+{"family": "Folate_carrier", "n_seqs": 318, "length": 438, "gap_rates": [0.8773584905660378, 0.5880503144654088, 0.5345911949685535, 0.5408805031446541, 0.5062893081761006, 0.46855345911949686, 0.4528301886792453, 0.4339622641509434, 0.4276729559748428, 0.42138364779874216, 0.42138364779874216, 0.41509433962264153, 0.41509433962264153, 0.41509433962264153, 0.4025157232704403, 0.39937106918238996, 0.39622641509433965, 0.389937106918239, 0.389937106918239, 0.389937106918239, 0.389937106918239, 0.389937106918239, 0.389937106918239, 0.389937106918239, 0.3867924528301887, 0.3867924528301887, 0.3867924528301887, 0.3836477987421384, 0.3836477987421384, 0.3836477987421384, 0.3867924528301887, 0.389937106918239, 0.5754716981132075, 0.41823899371069184, 0.3805031446540881, 0.37735849056603776, 0.37735849056603776, 0.37735849056603776, 0.37735849056603776, 0.37735849056603776, 0.36163522012578614, 0.3522012578616352, 0.36163522012578614, 0.36792452830188677, 0.36792452830188677, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FtsQ.gap.json b/pfam_gap_rates/FtsQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f344a7f95dbdfd09170e7e339610ace48951992
--- /dev/null
+++ b/pfam_gap_rates/FtsQ.gap.json
@@ -0,0 +1 @@
+{"family": "FtsQ", "n_seqs": 1075, "length": 165, "gap_rates": [0.5813953488372093, 0.4418604651162791, 0.3944186046511628, 0.5609302325581396, 0.5060465116279069, 0.4595348837209302, 0.7283720930232558, 0.17302325581395347, 0.48093023255813955, 0.09302325581395349, 0.04930232558139535, 0.03906976744186046, 0.030697674418604652, 0.029767441860465118, 0.029767441860465118, 0.026976744186046512, 0.026046511627906978, 0.026046511627906978, 0.026046511627906978, 0.026046511627906978, 0.026046511627906978, 0.029767441860465118, 0.8241860465116279, 0.3293023255813953, 0.20651162790697675, 0.22046511627906976, 0.4344186046511628, 0.1786046511627907, 0.19627906976744186, 0.20465116279069767, 0.3851162790697674, 0.8344186046511628, 0.5934883720930233, 0.2930232558139535, 0.8474418604651163, 0.9255813953488372, 0.8111627906976744, 0.01674418604651163, 0.01674418604651163, 0.01581395348837209, 0.01674418604651163, 0.01674418604651163, 0.8967441860465116, 0.9181395348837209, 0.9441860465116279, 0.9497674418604651, 0.9395348837209302, 0.9106976744186046, 0.892093023255814, 0.03441860465116279, 0.7227906976744186, 0.932093023255814, 0.9004651162790698, 0.626046511627907, 0.061395348837209304, 0.09023255813953489, 0.08558139534883721, 0.09302325581395349, 0.09209302325581395, 0.09953488372093024, 0.7758139534883721, 0.0074418604651162795, 0.6474418604651163, 0.6967441860465117, 0.772093023255814, 0.812093023255814, 0.8567441860465116, 0.9144186046511628, 0.9386046511627907, 0.8753488372093023, 0.8306976744186046, 0.7962790697674419, 0.7376744186046512, 0.6706976744186046, 0.598139534883721, 0.0065116279069767444, 0.011162790697674419, 0.010232558139534883, 0.008372093023255815, 0.008372093023255815, 0.0037209302325581397, 0.0037209302325581397, 0.008372093023255815, 0.15348837209302327, 0.012093023255813953, 0.01581395348837209, 0.01953488372093023, 0.03255813953488372, 0.05581395348837209, 0.5925581395348837, 0.9423255813953488, 0.9069767441860465, 0.5720930232558139, 0.5079069767441861, 0.0018604651162790699, 0.0027906976744186047, 0.0018604651162790699, 0.0018604651162790699, 0.0009302325581395349, 0.8688372093023256, 0.88, 0.8753488372093023, 0.867906976744186, 0.012093023255813953, 0.010232558139534883, 0.0018604651162790699, 0.011162790697674419, 0.0, 0.0, 0.0018604651162790699, 0.0018604651162790699, 0.0, 0.0, 0.0009302325581395349, 0.0, 0.061395348837209304, 0.0, 0.0, 0.0027906976744186047, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.10232558139534884, 0.4846511627906977, 0.5144186046511627, 0.52, 0.10976744186046512, 0.45209302325581396, 0.3972093023255814, 0.3786046511627907, 0.36093023255813955, 0.0074418604651162795, 0.008372093023255815, 0.010232558139534883, 0.011162790697674419, 0.014883720930232559, 0.01953488372093023, 0.023255813953488372, 0.026976744186046512, 0.03441860465116279, 0.04372093023255814, 0.06046511627906977, 0.12093023255813953, 0.6893023255813954, 0.9265116279069767, 0.8558139534883721, 0.5469767441860465, 0.2344186046511628, 0.7665116279069767, 0.9432558139534883, 0.46325581395348836, 0.32651162790697674, 0.24372093023255814, 0.8455813953488373, 0.5748837209302325, 0.23906976744186045, 0.22697674418604652, 0.22790697674418606, 0.23255813953488372, 0.24558139534883722, 0.3041860465116279, 0.46232558139534885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/G5.gap.json b/pfam_gap_rates/G5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81dbd0748205afb01e4564d93f8a14b153bbcffe
--- /dev/null
+++ b/pfam_gap_rates/G5.gap.json
@@ -0,0 +1 @@
+{"family": "G5", "n_seqs": 1402, "length": 76, "gap_rates": [0.8815977175463623, 0.6198288159771754, 0.4037089871611983, 0.28744650499286734, 0.20328102710413695, 0.14835948644793154, 0.10271041369472182, 0.06776034236804565, 0.05206847360912981, 0.07061340941512126, 0.026390870185449358, 0.01925820256776034, 0.014265335235378032, 0.010699001426533523, 0.009985734664764621, 0.009272467902995721, 0.007845934379457917, 0.008559201141226819, 0.010699001426533523, 0.009272467902995721, 0.007845934379457917, 0.007845934379457917, 0.005706134094151213, 0.004992867332382311, 0.0042796005706134095, 0.0042796005706134095, 0.016405135520684736, 0.007132667617689016, 0.020684736091298145, 0.003566333808844508, 0.0021398002853067048, 0.0007132667617689016, 0.0014265335235378032, 0.0007132667617689016, 0.0007132667617689016, 0.0007132667617689016, 0.0014265335235378032, 0.0014265335235378032, 0.0021398002853067048, 0.0014265335235378032, 0.0014265335235378032, 0.0021398002853067048, 0.004992867332382311, 0.004992867332382311, 0.009272467902995721, 0.06062767475035663, 0.06062767475035663, 0.9443651925820257, 0.012838801711840228, 0.009272467902995721, 0.019971469329529243, 0.029243937232524966, 0.029957203994293864, 0.02781740370898716, 0.014978601997146932, 0.026390870185449358, 0.02710413694721826, 0.02781740370898716, 0.02211126961483595, 0.014978601997146932, 0.09415121255349501, 0.10057061340941512, 0.03851640513552068, 0.15549215406562053, 0.030670470756062766, 0.015691868758915834, 0.016405135520684736, 0.018544935805991442, 0.019971469329529243, 0.023537803138373753, 0.03209700427960057, 0.039942938659058486, 0.049215406562054205, 0.07489300998573467, 0.181169757489301, 0.4429386590584879], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/G6PD_N.gap.json b/pfam_gap_rates/G6PD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93c2332d46f774839c04baadcd73a98cb5c1dd45
--- /dev/null
+++ b/pfam_gap_rates/G6PD_N.gap.json
@@ -0,0 +1 @@
+{"family": "G6PD_N", "n_seqs": 1750, "length": 194, "gap_rates": [0.25542857142857145, 0.05657142857142857, 0.05542857142857143, 0.05542857142857143, 0.054285714285714284, 0.05142857142857143, 0.05028571428571429, 0.05028571428571429, 0.04971428571428571, 0.04857142857142857, 0.04857142857142857, 0.048, 0.045714285714285714, 0.045142857142857144, 0.048, 0.048, 0.048, 0.048, 0.04742857142857143, 0.048, 0.048, 0.045714285714285714, 0.04742857142857143, 0.04857142857142857, 0.05085714285714286, 0.056, 0.05942857142857143, 0.07771428571428571, 0.06857142857142857, 0.053142857142857144, 0.04971428571428571, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.044571428571428574, 0.044, 0.044, 0.045142857142857144, 0.044, 0.046285714285714284, 0.045714285714285714, 0.04742857142857143, 0.045714285714285714, 0.044, 0.044, 0.044, 0.04285714285714286, 0.04342857142857143, 0.04342857142857143, 0.04342857142857143, 0.04342857142857143, 0.04342857142857143, 0.045714285714285714, 0.07085714285714285, 0.24342857142857144, 0.19142857142857142, 0.19714285714285715, 0.35314285714285715, 0.33885714285714286, 0.324, 0.30514285714285716, 0.15542857142857142, 0.07371428571428572, 0.06457142857142857, 0.05542857142857143, 0.04914285714285714, 0.046285714285714284, 0.04057142857142857, 0.038857142857142854, 0.04, 0.038285714285714284, 0.038857142857142854, 0.037142857142857144, 0.036571428571428574, 0.036571428571428574, 0.036, 0.03542857142857143, 0.03485714285714286, 0.036, 0.03542857142857143, 0.03542857142857143, 0.03542857142857143, 0.03542857142857143, 0.036571428571428574, 0.07542857142857143, 0.07085714285714285, 0.05085714285714286, 0.04057142857142857, 0.038285714285714284, 0.03485714285714286, 0.03485714285714286, 0.03485714285714286, 0.03485714285714286, 0.03542857142857143, 0.03542857142857143, 0.038857142857142854, 0.124, 0.5, 0.5462857142857143, 0.6937142857142857, 0.8965714285714286, 0.6314285714285715, 0.5234285714285715, 0.4268571428571429, 0.056, 0.037714285714285714, 0.7548571428571429, 0.7668571428571429, 0.7914285714285715, 0.7857142857142857, 0.7577142857142857, 0.7451428571428571, 0.03142857142857143, 0.03142857142857143, 0.030285714285714287, 0.030285714285714287, 0.030285714285714287, 0.030285714285714287, 0.030285714285714287, 0.03142857142857143, 0.03142857142857143, 0.032, 0.032, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.032, 0.20342857142857143, 0.045714285714285714, 0.052, 0.06571428571428571, 0.2977142857142857, 0.7691428571428571, 0.9251428571428572, 0.9034285714285715, 0.6702857142857143, 0.264, 0.07657142857142857, 0.03314285714285714, 0.032, 0.032, 0.032, 0.03257142857142857, 0.032, 0.030857142857142857, 0.030857142857142857, 0.032, 0.032, 0.03257142857142857, 0.03257142857142857, 0.03257142857142857, 0.03142857142857143, 0.030857142857142857, 0.030285714285714287, 0.030285714285714287, 0.03142857142857143, 0.030857142857142857, 0.032, 0.03257142857142857, 0.03371428571428572, 0.03428571428571429, 0.03371428571428572, 0.03257142857142857, 0.03371428571428572, 0.032, 0.030857142857142857, 0.029142857142857144, 0.02857142857142857, 0.02857142857142857, 0.028, 0.028, 0.02857142857142857, 0.029714285714285714, 0.029714285714285714, 0.029714285714285714, 0.029714285714285714, 0.030285714285714287, 0.030857142857142857, 0.030857142857142857, 0.03142857142857143, 0.03142857142857143, 0.036, 0.044571428571428574, 0.07428571428571429, 0.108], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GAF.gap.json b/pfam_gap_rates/GAF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4afabfe6125a925c3355e84b3e244ede26838719
--- /dev/null
+++ b/pfam_gap_rates/GAF.gap.json
@@ -0,0 +1 @@
+{"family": "GAF", "n_seqs": 5000, "length": 216, "gap_rates": [0.716, 0.5024, 0.3768, 0.2998, 0.2568, 0.2122, 0.1892, 0.1738, 0.1574, 0.1474, 0.1404, 0.1348, 0.1286, 0.1252, 0.1218, 0.1156, 0.1114, 0.1094, 0.1248, 0.11, 0.1024, 0.1008, 0.0974, 0.0968, 0.108, 0.1072, 0.6408, 0.7712, 0.8026, 0.8456, 0.878, 0.9002, 0.9128, 0.9244, 0.9328, 0.929, 0.9194, 0.9072, 0.8914, 0.8622, 0.823, 0.7856, 0.755, 0.608, 0.2662, 0.3812, 0.2664, 0.2536, 0.2502, 0.4022, 0.911, 0.3862, 0.184, 0.4414, 0.5654, 0.6396, 0.7208, 0.787, 0.832, 0.8706, 0.9246, 0.9474, 0.9376, 0.8908, 0.8506, 0.8136, 0.7552, 0.6836, 0.6022, 0.4782, 0.4092, 0.3084, 0.1442, 0.1374, 0.1376, 0.135, 0.132, 0.1322, 0.0692, 0.5766, 0.6702, 0.7764, 0.8458, 0.924, 0.9414, 0.8774, 0.815, 0.7238, 0.6224, 0.5232, 0.0752, 0.141, 0.1404, 0.1426, 0.1116, 0.8766, 0.917, 0.766, 0.1076, 0.1122, 0.1168, 0.2694, 0.1808, 0.0728, 0.7226, 0.7636, 0.8178, 0.8574, 0.9132, 0.9264, 0.8888, 0.8336, 0.7896, 0.739, 0.6962, 0.0432, 0.0416, 0.0372, 0.0366, 0.054, 0.0312, 0.0238, 0.021, 0.0208, 0.021, 0.0216, 0.022, 0.1832, 0.922, 0.2286, 0.2404, 0.848, 0.8902, 0.8238, 0.0588, 0.0484, 0.0468, 0.047, 0.0648, 0.0736, 0.0444, 0.7912, 0.8802, 0.938, 0.9128, 0.8474, 0.7024, 0.4052, 0.277, 0.2272, 0.122, 0.1168, 0.0986, 0.041, 0.0168, 0.006, 0.0068, 0.0178, 0.937, 0.012, 0.0064, 0.0022, 0.002, 0.0018, 0.0018, 0.0018, 0.0022, 0.003, 0.9112, 0.6162, 0.0044, 0.0072, 0.0036, 0.008, 0.004, 0.0042, 0.004, 0.0042, 0.0048, 0.005, 0.0054, 0.006, 0.714, 0.8808, 0.6358, 0.0134, 0.0648, 0.068, 0.6482, 0.9242, 0.9416, 0.8564, 0.4478, 0.1486, 0.037, 0.903, 0.0338, 0.0352, 0.0378, 0.0402, 0.042, 0.0454, 0.0484, 0.053, 0.9498, 0.0676, 0.0732, 0.0802, 0.0932, 0.1114, 0.1358, 0.1606, 0.2286, 0.3138, 0.417, 0.5362], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GAGA_bind.gap.json b/pfam_gap_rates/GAGA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f01e4b486896a532426e7a18e28a84383f2d3c84
--- /dev/null
+++ b/pfam_gap_rates/GAGA_bind.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GAIN.gap.json b/pfam_gap_rates/GAIN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b08e23aafc1ea3a63510945b5782b70406eb9e99
--- /dev/null
+++ b/pfam_gap_rates/GAIN.gap.json
@@ -0,0 +1 @@
+{"family": "GAIN", "n_seqs": 362, "length": 307, "gap_rates": [0.5220994475138122, 0.4088397790055249, 0.30662983425414364, 0.24585635359116023, 0.2265193370165746, 0.2154696132596685, 0.20994475138121546, 0.20441988950276244, 0.19613259668508287, 0.19337016574585636, 0.19337016574585636, 0.1878453038674033, 0.17679558011049723, 0.6767955801104972, 0.42265193370165743, 0.15469613259668508, 0.1408839779005525, 0.13812154696132597, 0.13259668508287292, 0.13259668508287292, 0.12154696132596685, 0.11878453038674033, 0.1132596685082873, 0.1132596685082873, 0.1132596685082873, 0.1132596685082873, 0.1132596685082873, 0.1132596685082873, 0.1132596685082873, 0.1132596685082873, 0.1132596685082873, 0.11602209944751381, 0.10773480662983426, 0.7237569060773481, 0.7403314917127072, 0.7596685082872928, 0.7679558011049724, 0.7734806629834254, 0.7651933701657458, 0.7569060773480663, 0.7292817679558011, 0.712707182320442, 0.10773480662983426, 0.11878453038674033, 0.11878453038674033, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GATase.gap.json b/pfam_gap_rates/GATase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a4b8bf577372c3a8acaac1728e560788c4975b1
--- /dev/null
+++ b/pfam_gap_rates/GATase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GBP.gap.json b/pfam_gap_rates/GBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1371f067f744670846385ac367b3faddcdb38b5c
--- /dev/null
+++ b/pfam_gap_rates/GBP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GCR1_C.gap.json b/pfam_gap_rates/GCR1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..531a91f1b07052052fc99f7c6e736692fda0d8af
--- /dev/null
+++ b/pfam_gap_rates/GCR1_C.gap.json
@@ -0,0 +1 @@
+{"family": "GCR1_C", "n_seqs": 139, "length": 108, "gap_rates": [0.4676258992805755, 0.3669064748201439, 0.2589928057553957, 0.2446043165467626, 0.18705035971223022, 0.1366906474820144, 0.08633093525179857, 0.05755395683453238, 0.05755395683453238, 0.03597122302158273, 0.014388489208633094, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07194244604316546, 0.05755395683453238, 0.04316546762589928, 0.920863309352518, 0.9424460431654677, 0.9424460431654677, 0.9496402877697842, 0.9424460431654677, 0.9424460431654677, 0.8920863309352518, 0.02877697841726619, 0.02877697841726619, 0.007194244604316547, 0.007194244604316547, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007194244604316547, 0.050359712230215826, 0.8776978417266187, 0.014388489208633094, 0.0, 0.0, 0.007194244604316547, 0.007194244604316547, 0.02877697841726619, 0.9064748201438849, 0.8848920863309353, 0.02877697841726619, 0.02158273381294964, 0.02877697841726619, 0.8561151079136691, 0.9424460431654677, 0.9496402877697842, 0.9424460431654677, 0.7697841726618705, 0.28776978417266186, 0.02877697841726619, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.02158273381294964, 0.02158273381294964, 0.02877697841726619, 0.02877697841726619, 0.03597122302158273, 0.02877697841726619, 0.02877697841726619, 0.02877697841726619, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.04316546762589928, 0.9136690647482014, 0.9136690647482014, 0.9280575539568345, 0.9280575539568345, 0.9496402877697842, 0.9496402877697842, 0.935251798561151, 0.9280575539568345, 0.920863309352518, 0.9136690647482014, 0.9064748201438849, 0.050359712230215826, 0.07913669064748201, 0.3597122302158273, 0.14388489208633093, 0.935251798561151, 0.9280575539568345, 0.1223021582733813, 0.1223021582733813, 0.12949640287769784, 0.12949640287769784, 0.1366906474820144, 0.1366906474820144, 0.14388489208633093, 0.14388489208633093, 0.15827338129496402, 0.16546762589928057, 0.2158273381294964, 0.2733812949640288, 0.37410071942446044, 0.4748201438848921], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GFO_IDH_MocA.gap.json b/pfam_gap_rates/GFO_IDH_MocA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06aef3b8c50258cc5527b8913c7d83ed89e9247b
--- /dev/null
+++ b/pfam_gap_rates/GFO_IDH_MocA.gap.json
@@ -0,0 +1 @@
+{"family": "GFO_IDH_MocA", "n_seqs": 5000, "length": 145, "gap_rates": [0.4894, 0.193, 0.1212, 0.1014, 0.092, 0.089, 0.0862, 0.0834, 0.1026, 0.0866, 0.0838, 0.8848, 0.0766, 0.0764, 0.0742, 0.0718, 0.072, 0.1692, 0.075, 0.0706, 0.0706, 0.0704, 0.0704, 0.4928, 0.1112, 0.07, 0.0512, 0.8866, 0.916, 0.9318, 0.9226, 0.9032, 0.8546, 0.0432, 0.0424, 0.0418, 0.0526, 0.0354, 0.0342, 0.0328, 0.0324, 0.0316, 0.031, 0.0446, 0.0378, 0.0334, 0.0332, 0.0502, 0.0606, 0.873, 0.9144, 0.9484, 0.9386, 0.8848, 0.8086, 0.0732, 0.0678, 0.0558, 0.0372, 0.034, 0.0336, 0.0278, 0.7786, 0.9314, 0.8368, 0.4944, 0.0414, 0.0336, 0.031, 0.0154, 0.9172, 0.9292, 0.9464, 0.9408, 0.9214, 0.8902, 0.0128, 0.0124, 0.0118, 0.0114, 0.0098, 0.011, 0.1332, 0.0944, 0.9446, 0.8992, 0.0234, 0.0066, 0.005, 0.005, 0.0052, 0.0052, 0.0054, 0.0052, 0.0046, 0.0058, 0.0064, 0.0054, 0.005, 0.0046, 0.0048, 0.0052, 0.0056, 0.0058, 0.0056, 0.0058, 0.0062, 0.0054, 0.006, 0.0058, 0.0068, 0.006, 0.006, 0.0088, 0.0102, 0.0116, 0.0134, 0.015, 0.0168, 0.0168, 0.0234, 0.0238, 0.0202, 0.0208, 0.0214, 0.0218, 0.0224, 0.0238, 0.0244, 0.0254, 0.0282, 0.03, 0.0358, 0.042, 0.047, 0.054, 0.0624, 0.0768, 0.0986, 0.1268, 0.1704, 0.239, 0.3794, 0.5306, 0.7146], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GGACT.gap.json b/pfam_gap_rates/GGACT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d56b3a209e6aac41074b03ddfec9207837f6739
--- /dev/null
+++ b/pfam_gap_rates/GGACT.gap.json
@@ -0,0 +1 @@
+{"family": "GGACT", "n_seqs": 1283, "length": 183, "gap_rates": [0.24941543257989088, 0.11847233047544817, 0.08417770849571317, 0.07950116913484022, 0.07872174590802807, 0.07872174590802807, 0.07872174590802807, 0.0740452065471551, 0.5315666406858924, 0.47466874512860485, 0.09664848012470771, 0.08106001558846454, 0.07092751363990647, 0.06858924395947, 0.07872174590802807, 0.3024162120031177, 0.07482462977396727, 0.0646921278254092, 0.16835541699142634, 0.10054559625876851, 0.7856586126266563, 0.8542478565861262, 0.9236165237724084, 0.8893219017926735, 0.8324240062353858, 0.7412314886983632, 0.4731098986749805, 0.060015588464536244, 0.946219797349961, 0.042088854247856584, 0.05300077942322681, 0.06547155105222136, 0.042088854247856584, 0.036632891660171474, 0.03273577552611068, 0.22759158222915044, 0.044427123928293066, 0.02338269680436477, 0.02260327357755261, 0.02260327357755261, 0.22291504286827749, 0.027279812938425563, 0.02260327357755261, 0.021823850350740453, 0.02338269680436477, 0.8355416991426344, 0.8901013250194856, 0.5089633671083398, 0.11301636788776305, 0.3328137178487919, 0.07560405300077942, 0.9041309431021044, 0.03351519875292284, 0.027279812938425563, 0.9306313328137179, 0.9080280592361653, 0.021044427123928292, 0.020265003897116135, 0.019485580670303974, 0.014029618082618862, 0.6734216679657054, 0.828526890101325, 0.8706157443491817, 0.8893219017926735, 0.8994544037412315, 0.9080280592361653, 0.9454403741231489, 0.9204988308651598, 0.9025720966484801, 0.8947778643803586, 0.8807482462977396, 0.8558067030397506, 0.8074824629773967, 0.6336710833982853, 0.013250194855806703, 0.07326578332034295, 0.0740452065471551, 0.05144193296960249, 0.0171473109898675, 0.8503507404520655, 0.9469992205767732, 0.7420109119251753, 0.1293842556508184, 0.012470771628994544, 0.010132501948558068, 0.009353078721745909, 0.8269680436477007, 0.009353078721745909, 0.007014809041309431, 0.004676539360872954, 0.006235385814497272, 0.00857365549493375, 0.009353078721745909, 0.007014809041309431, 0.8690568978955573, 0.7575993764614185, 0.00857365549493375, 0.005455962587685113, 0.006235385814497272, 0.007014809041309431, 0.010132501948558068, 0.010132501948558068, 0.010911925175370226, 0.011691348402182385, 0.011691348402182385, 0.013250194855806703, 0.7918939984411536, 0.8363211223694466, 0.8721745908028059, 0.8028059236165238, 0.7864380358534684, 0.6882307092751364, 0.39984411535463754, 0.35853468433359315, 0.05845674201091192, 0.024162120031176928, 0.02494154325798909, 0.02494154325798909, 0.026500389711613406, 0.026500389711613406, 0.026500389711613406, 0.2969602494154326, 0.2860483242400624, 0.04598597038191738, 0.03819173811379579, 0.9329696024941543, 0.044427123928293066, 0.060795011691348405, 0.8067030397505845, 0.8924395946999221, 0.9454403741231489, 0.9236165237724084, 0.8581449727201871, 0.7155105222135619, 0.5113016367887763, 0.33593141075604055, 0.18394388152766952, 0.1504286827747467, 0.14731098986749805, 0.13561964146531566, 0.08963367108339829, 0.8612626656274357, 0.8760717069368668, 0.9002338269680437, 0.9088074824629774, 0.9189399844115355, 0.9306313328137179, 0.9446609508963367, 0.9477786438035853, 0.9368667186282151, 0.9259547934528449, 0.9150428682774747, 0.9064692127825409, 0.8893219017926735, 0.8674980514419329, 0.8238503507404521, 0.1348402182385035, 0.09664848012470771, 0.07950116913484022, 0.08028059236165237, 0.08417770849571317, 0.09275136399064692, 0.11457521434138737, 0.20810600155884645, 0.25019485580670303, 0.9368667186282151, 0.9189399844115355, 0.7342166796570537, 0.6531566640685893, 0.6360093530787218, 0.6258768511301637, 0.5806703039750585, 0.5432579890880749, 0.5565081839438816, 0.5674201091192518, 0.9438815276695246, 0.5658612626656274, 0.5681995323460639, 0.5744349181605611, 0.5853468433359315, 0.5954793452844894, 0.6141855027279813, 0.7147310989867498], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GGGtGRT.gap.json b/pfam_gap_rates/GGGtGRT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2fa07277bbeb56c401360cf3adcdcb1b08f4c0b1
--- /dev/null
+++ b/pfam_gap_rates/GGGtGRT.gap.json
@@ -0,0 +1 @@
+{"family": "GGGtGRT", "n_seqs": 271, "length": 327, "gap_rates": [0.09225092250922509, 0.09225092250922509, 0.09225092250922509, 0.09225092250922509, 0.09225092250922509, 0.09225092250922509, 0.09225092250922509, 0.09225092250922509, 0.08118081180811808, 0.08118081180811808, 0.08118081180811808, 0.07011070110701106, 0.06642066420664207, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 0.06273062730627306, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GH3.gap.json b/pfam_gap_rates/GH3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..050db93412bb01e966f24174aafac349037b18e8
--- /dev/null
+++ b/pfam_gap_rates/GH3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GH97_N.gap.json b/pfam_gap_rates/GH97_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1dc32d6d09c8acc5330b4ba3f15c06a4be7ac9c9
--- /dev/null
+++ b/pfam_gap_rates/GH97_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GMC_oxred_N.gap.json b/pfam_gap_rates/GMC_oxred_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..894af843992c2fbd003d788b25b164074168ff56
--- /dev/null
+++ b/pfam_gap_rates/GMC_oxred_N.gap.json
@@ -0,0 +1 @@
+{"family": "GMC_oxred_N", "n_seqs": 5000, "length": 352, "gap_rates": [0.44, 0.3082, 0.2952, 0.2788, 0.2734, 0.268, 0.263, 0.2602, 0.2584, 0.2574, 0.2558, 0.2552, 0.255, 0.2542, 0.2636, 0.2552, 0.2552, 0.2554, 0.2538, 0.2538, 0.2566, 0.276, 0.2984, 0.371, 0.2758, 0.2516, 0.2492, 0.2506, 0.2484, 0.248, 0.2472, 0.2478, 0.248, 0.2498, 0.2516, 0.2536, 0.2558, 0.2616, 0.2662, 0.2708, 0.7074, 0.8852, 0.9334, 0.9436, 0.9182, 0.7798, 0.438, 0.2836, 0.2862, 0.2788, 0.275, 0.2712, 0.2692, 0.2662, 0.27, 0.2684, 0.2678, 0.2636, 0.2632, 0.2594, 0.2592, 0.257, 0.2562, 0.2564, 0.2532, 0.2498, 0.249, 0.2456, 0.2438, 0.241, 0.2392, 0.235, 0.233, 0.2304, 0.22, 0.2168, 0.2146, 0.2118, 0.2006, 0.1946, 0.196, 0.3348, 0.2106, 0.2008, 0.1898, 0.1872, 0.183, 0.183, 0.183, 0.1832, 0.1832, 0.1848, 0.184, 0.1838, 0.1834, 0.1808, 0.18, 0.1802, 0.1812, 0.182, 0.1816, 0.182, 0.1824, 0.1842, 0.1896, 0.196, 0.1976, 0.2026, 0.2126, 0.2128, 0.2094, 0.203, 0.6566, 0.2926, 0.2778, 0.2656, 0.2576, 0.1988, 0.1966, 0.1874, 0.1814, 0.1798, 0.18, 0.1802, 0.1796, 0.1802, 0.18, 0.1802, 0.1798, 0.1802, 0.1818, 0.3784, 0.3506, 0.355, 0.3524, 0.348, 0.3308, 0.5858, 0.698, 0.7634, 0.7978, 0.8238, 0.8786, 0.9454, 0.924, 0.8518, 0.8092, 0.7872, 0.742, 0.6422, 0.5408, 0.3176, 0.3154, 0.3112, 0.3088, 0.3014, 0.2988, 0.2876, 0.1978, 0.197, 0.2002, 0.2004, 0.1994, 0.9468, 0.9158, 0.6906, 0.2808, 0.2314, 0.2114, 0.2, 0.196, 0.193, 0.1878, 0.1856, 0.1852, 0.1848, 0.917, 0.1804, 0.1786, 0.1758, 0.1762, 0.1782, 0.177, 0.178, 0.1756, 0.175, 0.1716, 0.1726, 0.1714, 0.17, 0.7626, 0.8666, 0.8932, 0.9088, 0.937, 0.9452, 0.9308, 0.8994, 0.8818, 0.804, 0.7158, 0.2766, 0.1892, 0.1806, 0.1754, 0.1648, 0.1586, 0.1546, 0.15, 0.8844, 0.9296, 0.798, 0.148, 0.1432, 0.1416, 0.1388, 0.1374, 0.1372, 0.1376, 0.1374, 0.1378, 0.3546, 0.921, 0.7856, 0.3354, 0.1376, 0.1334, 0.1316, 0.1288, 0.128, 0.128, 0.1302, 0.1332, 0.1306, 0.1322, 0.1342, 0.1378, 0.1306, 0.1274, 0.1252, 0.1248, 0.1266, 0.123, 0.858, 0.1164, 0.1162, 0.2758, 0.12, 0.1056, 0.104, 0.1022, 0.1012, 0.1092, 0.0998, 0.0994, 0.0988, 0.097, 0.098, 0.0974, 0.0978, 0.1794, 0.158, 0.7614, 0.9036, 0.9396, 0.8328, 0.7358, 0.1116, 0.4958, 0.4026, 0.1018, 0.0998, 0.0978, 0.097, 0.0974, 0.0976, 0.0974, 0.0968, 0.0974, 0.0984, 0.0992, 0.1006, 0.1024, 0.1034, 0.1038, 0.8266, 0.8804, 0.922, 0.9408, 0.9462, 0.9356, 0.9028, 0.8584, 0.7798, 0.6508, 0.4908, 0.1686, 0.116, 0.1098, 0.1006, 0.0932, 0.1004, 0.0876, 0.0872, 0.0864, 0.0862, 0.0856, 0.0852, 0.0852, 0.085, 0.0872, 0.0866, 0.086, 0.0864, 0.0864, 0.0856, 0.0862, 0.087, 0.0872, 0.0996, 0.1128, 0.1472, 0.1642, 0.252, 0.1904, 0.1918, 0.199, 0.206, 0.3276, 0.3272, 0.3258, 0.3266, 0.3182, 0.3186, 0.2998, 0.2876, 0.2874, 0.2862, 0.2888, 0.2882, 0.2752, 0.388, 0.2276, 0.229, 0.2312, 0.2326, 0.2376, 0.2444, 0.252, 0.2622, 0.3476, 0.8942], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GPS.gap.json b/pfam_gap_rates/GPS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a20f2faf49910b1440919f576de0eb7459acb123
--- /dev/null
+++ b/pfam_gap_rates/GPS.gap.json
@@ -0,0 +1 @@
+{"family": "GPS", "n_seqs": 1174, "length": 54, "gap_rates": [0.6567291311754685, 0.20357751277683134, 0.09454855195911414, 0.07836456558773425, 0.06814310051107325, 0.06473594548551959, 0.4676320272572402, 0.645655877342419, 0.9293015332197615, 0.8356047700170358, 0.5868824531516184, 0.5068143100511073, 0.1354344122657581, 0.16524701873935263, 0.10817717206132879, 0.04770017035775128, 0.022998296422487224, 0.018739352640545145, 0.01192504258943782, 0.01192504258943782, 0.011073253833049404, 0.011073253833049404, 0.0068143100511073255, 0.00596252129471891, 0.6286201022146508, 0.9122657580919932, 0.42248722316865417, 0.0068143100511073255, 0.1695059625212947, 0.1848381601362862, 0.7589437819420783, 0.924190800681431, 0.9454855195911414, 0.8952299829642248, 0.4735945485519591, 0.08603066439522998, 0.00596252129471891, 0.005110732538330494, 0.005110732538330494, 0.00596252129471891, 0.004258943781942078, 0.0034071550255536627, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.005110732538330494, 0.00596252129471891, 0.008517887563884156, 0.011073253833049404, 0.08603066439522998, 0.196763202725724, 0.262350936967632], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Galactosyl_T.gap.json b/pfam_gap_rates/Galactosyl_T.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acf720e8030408c0aa110c92b8d70c72266b0607
--- /dev/null
+++ b/pfam_gap_rates/Galactosyl_T.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glu_cys_ligase.gap.json b/pfam_gap_rates/Glu_cys_ligase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..008d6ed179022ce3b15117c935addc50856ca6da
--- /dev/null
+++ b/pfam_gap_rates/Glu_cys_ligase.gap.json
@@ -0,0 +1 @@
+{"family": "Glu_cys_ligase", "n_seqs": 476, "length": 382, "gap_rates": [0.9285714285714286, 0.773109243697479, 0.7016806722689075, 0.6113445378151261, 0.5882352941176471, 0.5609243697478992, 0.5273109243697479, 0.5, 0.46218487394957986, 0.4831932773109244, 0.40756302521008403, 0.3382352941176471, 0.3235294117647059, 0.3067226890756303, 0.2815126050420168, 0.27521008403361347, 0.27310924369747897, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2710084033613445, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2689075630252101, 0.2710084033613445, 0.2710084033613445, 0.2773109243697479, 0.2857142857142857, 0.28361344537815125, 0.27941176470588236, 0.28361344537815125, 0.28781512605042014, 0.2857142857142857, 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diff --git a/pfam_gap_rates/Glu_syn_central.gap.json b/pfam_gap_rates/Glu_syn_central.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..093d613d5e4077e73daee477ee37154414f15b61
--- /dev/null
+++ b/pfam_gap_rates/Glu_syn_central.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glucosaminidase.gap.json b/pfam_gap_rates/Glucosaminidase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6834e96e00a814987b5ee4a110ad8a6e23222146
--- /dev/null
+++ b/pfam_gap_rates/Glucosaminidase.gap.json
@@ -0,0 +1 @@
+{"family": "Glucosaminidase", "n_seqs": 1476, "length": 183, "gap_rates": [0.48577235772357724, 0.2859078590785908, 0.1842818428184282, 0.1470189701897019, 0.12262872628726287, 0.1016260162601626, 0.08604336043360433, 0.06842818428184282, 0.06029810298102981, 0.052845528455284556, 0.041327913279132794, 0.023035230352303523, 0.016937669376693765, 0.013550135501355014, 0.012195121951219513, 0.01016260162601626, 0.009485094850948509, 0.008807588075880758, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.007452574525745257, 0.0047425474254742545, 0.0047425474254742545, 0.0047425474254742545, 0.0047425474254742545, 0.005420054200542005, 0.005420054200542005, 0.8218157181571816, 0.9302168021680217, 0.8204607046070461, 0.018970189701897018, 0.015582655826558265, 0.06029810298102981, 0.04065040650406504, 0.03048780487804878, 0.012872628726287264, 0.014227642276422764, 0.8577235772357723, 0.8712737127371274, 0.9478319783197832, 0.9491869918699187, 0.9444444444444444, 0.8590785907859079, 0.7947154471544715, 0.007452574525745257, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0047425474254742545, 0.0040650406504065045, 0.9464769647696477, 0.02032520325203252, 0.8692411924119241, 0.9031165311653117, 0.9275067750677507, 0.9444444444444444, 0.9166666666666666, 0.8841463414634146, 0.8584010840108401, 0.05894308943089431, 0.20596205962059622, 0.21612466124661248, 0.24390243902439024, 0.28387533875338755, 0.3502710027100271, 0.39498644986449866, 0.4186991869918699, 0.43766937669376693, 0.45257452574525747, 0.5535230352303523, 0.5772357723577236, 0.5955284552845529, 0.741869918699187, 0.8035230352303523, 0.6266937669376694, 0.5867208672086721, 0.5670731707317073, 0.47831978319783197, 0.4451219512195122, 0.43089430894308944, 0.3976964769647697, 0.36449864498644985, 0.33875338753387535, 0.2682926829268293, 0.23170731707317074, 0.21002710027100271, 0.19850948509485095, 0.14363143631436315, 0.08333333333333333, 0.9478319783197832, 0.016937669376693765, 0.9302168021680217, 0.9451219512195121, 0.8834688346883469, 0.005420054200542005, 0.005420054200542005, 0.005420054200542005, 0.005420054200542005, 0.005420054200542005, 0.005420054200542005, 0.006775067750677507, 0.006775067750677507, 0.006775067750677507, 0.006775067750677507, 0.006775067750677507, 0.006775067750677507, 0.0948509485094851, 0.01016260162601626, 0.8157181571815718, 0.013550135501355014, 0.012872628726287264, 0.015582655826558265, 0.016937669376693765, 0.14363143631436315, 0.28523035230352306, 0.5101626016260162, 0.6544715447154471, 0.8360433604336044, 0.924119241192412, 0.9376693766937669, 0.8990514905149052, 0.758130081300813, 0.556910569105691, 0.47560975609756095, 0.1673441734417344, 0.0989159891598916, 0.032520325203252036, 0.8895663956639567, 0.034552845528455285, 0.05555555555555555, 0.05623306233062331, 0.06300813008130081, 0.08062330623306233, 0.09688346883468835, 0.13617886178861788, 0.20392953929539295, 0.30284552845528456, 0.37398373983739835, 0.5907859078590786, 0.7378048780487805, 0.825880758807588, 0.8529810298102981, 0.8868563685636857, 0.9200542005420054, 0.9464769647696477, 0.8970189701897019, 0.8760162601626016, 0.8414634146341463, 0.7784552845528455, 0.676829268292683, 0.45867208672086723, 0.33875338753387535, 0.255420054200542, 0.15853658536585366, 0.11246612466124661, 0.08875338753387534, 0.06910569105691057, 0.05962059620596206, 0.05555555555555555, 0.0535230352303523, 0.03048780487804878, 0.04742547425474255, 0.9437669376693767, 0.8543360433604336, 0.0494579945799458, 0.06029810298102981, 0.05962059620596206, 0.054878048780487805, 0.042682926829268296, 0.04336043360433604, 0.044715447154471545, 0.04742547425474255, 0.0494579945799458, 0.05013550135501355, 0.05894308943089431, 0.06978319783197832, 0.08197831978319783, 0.10569105691056911, 0.1659891598915989, 0.2764227642276423, 0.48577235772357724, 0.8292682926829268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glug.gap.json b/pfam_gap_rates/Glug.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2e2cf00fc01c668575024104cf37f7584c5e780
--- /dev/null
+++ b/pfam_gap_rates/Glug.gap.json
@@ -0,0 +1 @@
+{"family": "Glug", "n_seqs": 362, "length": 32, "gap_rates": [0.6850828729281768, 0.4005524861878453, 0.23480662983425415, 0.08011049723756906, 0.008287292817679558, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008287292817679558, 0.0027624309392265192, 0.03314917127071823, 0.287292817679558, 0.643646408839779, 0.919889502762431, 0.9447513812154696, 0.925414364640884, 0.8950276243093923, 0.022099447513812154, 0.0027624309392265192, 0.0, 0.0, 0.0, 0.0, 0.0027624309392265192, 0.0027624309392265192, 0.011049723756906077, 0.016574585635359115, 0.06353591160220995, 0.09392265193370165, 0.35082872928176795], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glutaredoxin.gap.json b/pfam_gap_rates/Glutaredoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e3bd98bc88663e2980a822978afff85f77bf3ee
--- /dev/null
+++ b/pfam_gap_rates/Glutaredoxin.gap.json
@@ -0,0 +1 @@
+{"family": "Glutaredoxin", "n_seqs": 5000, "length": 73, "gap_rates": [0.241, 0.118, 0.0776, 0.0702, 0.066, 0.0548, 0.6976, 0.7, 0.7022, 0.699, 0.6902, 0.0376, 0.0332, 0.03, 0.0284, 0.0262, 0.024, 0.0236, 0.0156, 0.0136, 0.012, 0.0112, 0.0098, 0.0088, 0.0084, 0.0078, 0.0066, 0.0074, 0.0096, 0.0086, 0.932, 0.8798, 0.0052, 0.0056, 0.0054, 0.0054, 0.005, 0.0052, 0.0054, 0.0056, 0.0252, 0.0678, 0.7812, 0.7898, 0.761, 0.0186, 0.0202, 0.0186, 0.0186, 0.018, 0.0202, 0.0348, 0.0334, 0.0362, 0.1192, 0.9026, 0.942, 0.7742, 0.0386, 0.0574, 0.0402, 0.0412, 0.0428, 0.0448, 0.0542, 0.0582, 0.0672, 0.0836, 0.114, 0.1332, 0.1654, 0.2352, 0.3742], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gly_kinase.gap.json b/pfam_gap_rates/Gly_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9e588aba5a5e1ed869fd56b5237ce7d9bda9d46
--- /dev/null
+++ b/pfam_gap_rates/Gly_kinase.gap.json
@@ -0,0 +1 @@
+{"family": "Gly_kinase", "n_seqs": 1085, "length": 382, "gap_rates": [0.2534562211981567, 0.15299539170506912, 0.1456221198156682, 0.14101382488479264, 0.14101382488479264, 0.14101382488479264, 0.14101382488479264, 0.14101382488479264, 0.14285714285714285, 0.14101382488479264, 0.1391705069124424, 0.1336405529953917, 0.1336405529953917, 0.13179723502304147, 0.13087557603686636, 0.13087557603686636, 0.13087557603686636, 0.13087557603686636, 0.13087557603686636, 0.13087557603686636, 0.12811059907834102, 0.1271889400921659, 0.1271889400921659, 0.12811059907834102, 0.1271889400921659, 0.1271889400921659, 0.13087557603686636, 0.1400921658986175, 0.19907834101382488, 0.17695852534562212, 0.15023041474654378, 0.14101382488479264, 0.1327188940092166, 0.12626728110599078, 0.12534562211981568, 0.1271889400921659, 0.12534562211981568, 0.12534562211981568, 0.12073732718894009, 0.12073732718894009, 0.12165898617511521, 0.12258064516129032, 0.12350230414746544, 0.12258064516129032, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Gly_reductase.gap.json b/pfam_gap_rates/Gly_reductase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e281b8b342ac5de75fbc2261990d2e0b1049f4f
--- /dev/null
+++ b/pfam_gap_rates/Gly_reductase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydr_30_2.gap.json b/pfam_gap_rates/Glyco_hydr_30_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19a1126f8ac873ba4962a2084d2dad7419b122a5
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydr_30_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_12.gap.json b/pfam_gap_rates/Glyco_hydro_12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69f061f0b632c6fdbab175891045076cc75e7648
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_12.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_2_C.gap.json b/pfam_gap_rates/Glyco_hydro_2_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b031d6224f138339538aadc9661aecd67eaf9876
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_2_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_36.gap.json b/pfam_gap_rates/Glyco_hydro_36.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ea86125cdb5481847ff85ff09c916af0d79a5ae
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_36.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_43.gap.json b/pfam_gap_rates/Glyco_hydro_43.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36d65151d635b5d70d3502e06465fd45202f2430
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_43.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Glyco_hydro_72.gap.json b/pfam_gap_rates/Glyco_hydro_72.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63a41736e1baac0deaf490d5a81a6d148e71739b
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_72.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_75.gap.json b/pfam_gap_rates/Glyco_hydro_75.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53f91e14af4b5dcabf558999bbc62cb1bd384944
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_75.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_79n.gap.json b/pfam_gap_rates/Glyco_hydro_79n.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eea22f78d48eb57c438f3ae07d547aa3fb747289
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_79n.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_8.gap.json b/pfam_gap_rates/Glyco_hydro_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14e7a623c90a2a83d86cb6e12b306fca0664e3f1
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_92.gap.json b/pfam_gap_rates/Glyco_hydro_92.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18fdb39bad22ef6339663154c7ae873a3bb8483d
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_92.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_97.gap.json b/pfam_gap_rates/Glyco_hydro_97.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22ab095668abcfa01fd5beaf0477da733faad084
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_97.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_trans_4_4.gap.json b/pfam_gap_rates/Glyco_trans_4_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75b0569f3337effd52d1566c133d48dddbdcad22
--- /dev/null
+++ b/pfam_gap_rates/Glyco_trans_4_4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_15.gap.json b/pfam_gap_rates/Glyco_transf_15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccd46331b560ca1ca18f996d303e4adb2a497c72
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_15.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_28.gap.json b/pfam_gap_rates/Glyco_transf_28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d84a5e4b736d379df69822135c86268dab6d0561
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_28.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_transf_28", "n_seqs": 3001, "length": 154, "gap_rates": [0.3042319226924359, 0.11229590136621126, 0.08363878707097634, 0.07564145284905031, 0.0716427857380873, 0.07097634121959347, 0.06931022992335888, 0.047317560813062313, 0.0433188937020993, 0.03698767077640786, 0.036654448517160945, 0.03365544818393869, 0.0319893368877041, 0.030989670109963344, 0.03032322559146951, 0.029323558813728758, 0.02899033655448184, 0.02865711429523492, 0.028323892035988004, 0.027990669776741087, 0.027657447517494167, 0.027990669776741087, 0.027657447517494167, 0.027990669776741087, 0.03032322559146951, 0.029323558813728758, 0.06531156281239586, 0.04765078307230923, 0.031322892369210265, 0.032322559146951015, 0.6587804065311563, 0.6487837387537487, 0.36821059646784404, 0.028323892035988004, 0.028323892035988004, 0.028323892035988004, 0.02999000333222259, 0.02865711429523492, 0.027657447517494167, 0.02432522492502499, 0.021992669110296566, 0.02299233588803732, 0.022325891369543487, 0.027657447517494167, 0.3128957014328557, 0.026657780739753417, 0.02999000333222259, 0.02165944685104965, 0.02032655781406198, 0.020659780073308896, 0.020659780073308896, 0.02165944685104965, 0.025658113962012664, 0.024991669443518827, 0.023992002665778073, 0.02465844718427191, 0.025324891702765744, 0.026657780739753417, 0.7644118627124292, 0.8357214261912695, 0.8517160946351217, 0.8730423192269243, 0.931022992335888, 0.9403532155948018, 0.9380206597800733, 0.8850383205598134, 0.8570476507830723, 0.8407197600799733, 0.8303898700433189, 0.7527490836387871, 0.047317560813062313, 0.07430856381206265, 0.07264245251582806, 0.07297567477507498, 0.2202599133622126, 0.08430523158947018, 0.9460179940019994, 0.07697434188603798, 0.06931022992335888, 0.06797734088637121, 0.07030989670109963, 0.0696434521826058, 0.07297567477507498, 0.07364211929356881, 0.07664111962679107, 0.0789736754415195, 0.0793068977007664, 0.08063978673775409, 0.1449516827724092, 0.13628790403198934, 0.12362545818060647, 0.10329890036654449, 0.09863378873708764, 0.09830056647784072, 0.09663445518160613, 0.08563812062645784, 0.08630456514495169, 0.08863712095968011, 0.08863712095968011, 0.08963678773742086, 0.09263578807064311, 0.09663445518160613, 0.09730089970009996, 0.09563478840386538, 0.0959680106631123, 0.09796734421859381, 0.09763412195934688, 0.10696434521826058, 0.10296567810729756, 0.10296567810729756, 0.1016327890703099, 0.16827724091969343, 0.16594468510496502, 0.10429856714428523, 0.1016327890703099, 0.09930023325558147, 0.09930023325558147, 0.09930023325558147, 0.10029990003332223, 0.10029990003332223, 0.10063312229256914, 0.10063312229256914, 0.10229923358880373, 0.10296567810729756, 0.10863045651449517, 0.10463178940353215, 0.10429856714428523, 0.10496501166277908, 0.10629790069976675, 0.1072975674775075, 0.10896367877374209, 0.11062979006997667, 0.11096301232922359, 0.11062979006997667, 0.11096301232922359, 0.11096301232922359, 0.11162945684771743, 0.11162945684771743, 0.11296234588470509, 0.11429523492169277, 0.11629456847717427, 0.12029323558813729, 0.12362545818060647, 0.12662445851382872, 0.1299566811062979, 0.1339553482172609, 0.13862045984671775, 0.15194935021659448, 0.16461179606797735, 0.18393868710429856, 0.21059646784405198, 0.2425858047317561, 0.38720426524491836, 0.8700433188937021], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_5.gap.json b/pfam_gap_rates/Glyco_transf_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7185882e86d442fe33d619d0861d2a134ad9752a
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_54.gap.json b/pfam_gap_rates/Glyco_transf_54.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bd655657e2a034768b8cfdae05e0248f529f398
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_54.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glycolytic.gap.json b/pfam_gap_rates/Glycolytic.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b73bac418c48ef53444346e195e477e0dd6d796
--- /dev/null
+++ b/pfam_gap_rates/Glycolytic.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glycos_trans_3N.gap.json b/pfam_gap_rates/Glycos_trans_3N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..693a5f966cba74b51c4a2c37c6a0cd5926f701b5
--- /dev/null
+++ b/pfam_gap_rates/Glycos_trans_3N.gap.json
@@ -0,0 +1 @@
+{"family": "Glycos_trans_3N", "n_seqs": 3013, "length": 69, "gap_rates": [0.7982077663458347, 0.35313640889478926, 0.1885164288084965, 0.12844341188184533, 0.1072021241287753, 0.09259873879853966, 0.08031861931629605, 0.07002987056090275, 0.05940922668436774, 0.05044805841354132, 0.030866246266179887, 0.9253235977431131, 0.9359442416196482, 0.9269830733488218, 0.890142714902091, 0.014935280451377365, 0.01294390972452705, 0.010952538997676734, 0.009624958513109858, 0.008961168270826419, 0.0086292731496847, 0.00829737802854298, 0.007965482907401261, 0.007301692665117823, 0.0069697975439761035, 0.004646531695984069, 0.00431463657484235, 0.004646531695984069, 0.003318951211417192, 0.002655160969133754, 0.002655160969133754, 0.01659475605708596, 0.008961168270826419, 0.002655160969133754, 0.003318951211417192, 0.0019913707268503153, 0.002655160969133754, 0.001659475605708596, 0.00033189512114171923, 0.0006637902422834385, 0.0009956853634251576, 0.0009956853634251576, 0.001327580484566877, 0.001327580484566877, 0.001659475605708596, 0.0019913707268503153, 0.0023232658479920344, 0.005974112180550946, 0.0036508463325589115, 0.002987056090275473, 0.945569200132758, 0.943245934284766, 0.001659475605708596, 0.001659475605708596, 0.0023232658479920344, 0.002655160969133754, 0.002655160969133754, 0.0036508463325589115, 0.003982741453700631, 0.00431463657484235, 0.00431463657484235, 0.006306007301692665, 0.00829737802854298, 0.013275804845668768, 0.031861931629605045, 0.061732492532359774, 0.0916030534351145, 0.2678393627613674, 0.4284766013939595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glycos_transf_N.gap.json b/pfam_gap_rates/Glycos_transf_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19a897884817d233858cdb1ca999e1169a56cdfe
--- /dev/null
+++ b/pfam_gap_rates/Glycos_transf_N.gap.json
@@ -0,0 +1 @@
+{"family": "Glycos_transf_N", "n_seqs": 970, "length": 192, "gap_rates": [0.9103092783505154, 0.5824742268041238, 0.42061855670103093, 0.3371134020618557, 0.2907216494845361, 0.2690721649484536, 0.26804123711340205, 0.25773195876288657, 0.24742268041237114, 0.39278350515463917, 0.634020618556701, 0.8556701030927835, 0.9268041237113402, 0.7072164948453609, 0.4690721649484536, 0.34123711340206186, 0.18762886597938144, 0.10309278350515463, 0.5041237113402062, 0.7690721649484537, 0.9206185567010309, 0.8597938144329897, 0.5804123711340207, 0.4670103092783505, 0.06494845360824743, 0.04020618556701031, 0.03711340206185567, 0.03608247422680412, 0.03402061855670103, 0.03402061855670103, 0.032989690721649485, 0.032989690721649485, 0.032989690721649485, 0.03402061855670103, 0.030927835051546393, 0.030927835051546393, 0.0288659793814433, 0.027835051546391754, 0.02268041237113402, 0.02268041237113402, 0.021649484536082474, 0.021649484536082474, 0.021649484536082474, 0.020618556701030927, 0.020618556701030927, 0.01958762886597938, 0.01958762886597938, 0.02268041237113402, 0.026804123711340205, 0.032989690721649485, 0.18762886597938144, 0.19278350515463918, 0.0731958762886598, 0.03608247422680412, 0.024742268041237112, 0.021649484536082474, 0.020618556701030927, 0.018556701030927835, 0.018556701030927835, 0.01958762886597938, 0.02268041237113402, 0.02268041237113402, 0.01958762886597938, 0.018556701030927835, 0.018556701030927835, 0.01752577319587629, 0.015463917525773196, 0.023711340206185566, 0.02268041237113402, 0.021649484536082474, 0.01958762886597938, 0.01958762886597938, 0.020618556701030927, 0.9422680412371134, 0.04020618556701031, 0.37628865979381443, 0.8762886597938144, 0.9164948453608247, 0.8360824742268042, 0.26082474226804125, 0.03608247422680412, 0.01958762886597938, 0.015463917525773196, 0.01443298969072165, 0.711340206185567, 0.01134020618556701, 0.01134020618556701, 0.01134020618556701, 0.01134020618556701, 0.01134020618556701, 0.010309278350515464, 0.03814432989690722, 0.03711340206185567, 0.03402061855670103, 0.03402061855670103, 0.031958762886597936, 0.027835051546391754, 0.012371134020618556, 0.01134020618556701, 0.01134020618556701, 0.012371134020618556, 0.01443298969072165, 0.013402061855670102, 0.012371134020618556, 0.01134020618556701, 0.01134020618556701, 0.01134020618556701, 0.01134020618556701, 0.01134020618556701, 0.007216494845360825, 0.007216494845360825, 0.007216494845360825, 0.009278350515463918, 0.008247422680412371, 0.008247422680412371, 0.007216494845360825, 0.007216494845360825, 0.007216494845360825, 0.007216494845360825, 0.01134020618556701, 0.01134020618556701, 0.01134020618556701, 0.01134020618556701, 0.013402061855670102, 0.015463917525773196, 0.024742268041237112, 0.01443298969072165, 0.01134020618556701, 0.01134020618556701, 0.009278350515463918, 0.009278350515463918, 0.010309278350515464, 0.009278350515463918, 0.013402061855670102, 0.013402061855670102, 0.01752577319587629, 0.01752577319587629, 0.016494845360824743, 0.01752577319587629, 0.01752577319587629, 0.01958762886597938, 0.16391752577319588, 0.03814432989690722, 0.029896907216494847, 0.029896907216494847, 0.02577319587628866, 0.031958762886597936, 0.030927835051546393, 0.0288659793814433, 0.02268041237113402, 0.02268041237113402, 0.021649484536082474, 0.018556701030927835, 0.018556701030927835, 0.018556701030927835, 0.018556701030927835, 0.01958762886597938, 0.04020618556701031, 0.04020618556701031, 0.02268041237113402, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.02268041237113402, 0.02268041237113402, 0.023711340206185566, 0.024742268041237112, 0.02577319587628866, 0.027835051546391754, 0.0443298969072165, 0.4742268041237113, 0.44123711340206184, 0.03402061855670103, 0.03505154639175258, 0.03608247422680412, 0.03608247422680412, 0.03608247422680412, 0.04845360824742268, 0.058762886597938144, 0.07216494845360824, 0.11030927835051546, 0.2, 0.6371134020618556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gmad1.gap.json b/pfam_gap_rates/Gmad1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c85ac00a4258f048fdae5f7f1806dc858302f370
--- /dev/null
+++ b/pfam_gap_rates/Gmad1.gap.json
@@ -0,0 +1 @@
+{"family": "Gmad1", "n_seqs": 217, "length": 305, "gap_rates": [0.6820276497695853, 0.631336405529954, 0.5944700460829493, 0.5806451612903226, 0.5576036866359447, 0.9400921658986175, 0.511520737327189, 0.4470046082949309, 0.4147465437788018, 0.3686635944700461, 0.35023041474654376, 0.3271889400921659, 0.3087557603686636, 0.2903225806451613, 0.2764976958525346, 0.271889400921659, 0.2626728110599078, 0.2488479262672811, 0.23963133640552994, 0.2304147465437788, 0.22580645161290322, 0.22580645161290322, 0.21658986175115208, 0.46543778801843316, 0.17050691244239632, 0.12903225806451613, 0.11059907834101383, 0.11059907834101383, 0.11059907834101383, 0.0967741935483871, 0.0967741935483871, 0.09216589861751152, 0.08755760368663594, 0.09216589861751152, 0.08755760368663594, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.06912442396313365, 0.06451612903225806, 0.7926267281105991, 0.8525345622119815, 0.8940092165898618, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GpcrRhopsn4.gap.json b/pfam_gap_rates/GpcrRhopsn4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..330c9fd5a2ed41c1e3398422c783ac10836442bd
--- /dev/null
+++ b/pfam_gap_rates/GpcrRhopsn4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ground-like.gap.json b/pfam_gap_rates/Ground-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f118c3780ba318dae088b09b6416f482dffe8118
--- /dev/null
+++ b/pfam_gap_rates/Ground-like.gap.json
@@ -0,0 +1 @@
+{"family": "Ground-like", "n_seqs": 424, "length": 87, "gap_rates": [0.5731132075471698, 0.33490566037735847, 0.19103773584905662, 0.18632075471698112, 0.18632075471698112, 0.18396226415094338, 0.18160377358490565, 0.17688679245283018, 0.1650943396226415, 0.16273584905660377, 0.15566037735849056, 0.15566037735849056, 0.14386792452830188, 0.13679245283018868, 0.8985849056603774, 0.9033018867924528, 0.8962264150943396, 0.10613207547169812, 0.10613207547169812, 0.05660377358490566, 0.8490566037735849, 0.8584905660377359, 0.8915094339622641, 0.9363207547169812, 0.9457547169811321, 0.9268867924528302, 0.8797169811320755, 0.8490566037735849, 0.8042452830188679, 0.625, 0.03773584905660377, 0.02830188679245283, 0.02122641509433962, 0.018867924528301886, 0.01650943396226415, 0.01179245283018868, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.007075471698113208, 0.0047169811320754715, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0, 0.0047169811320754715, 0.0023584905660377358, 0.04009433962264151, 0.01179245283018868, 0.01179245283018868, 0.8820754716981132, 0.0023584905660377358, 0.0, 0.0, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.007075471698113208, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.6627358490566038, 0.0047169811320754715, 0.7759433962264151, 0.009433962264150943, 0.014150943396226415, 0.01650943396226415, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.02122641509433962, 0.02358490566037736, 0.025943396226415096, 0.02830188679245283, 0.030660377358490566, 0.03537735849056604, 0.04009433962264151, 0.04481132075471698, 0.05188679245283019, 0.07783018867924528, 0.1320754716981132], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Guanylate_kin.gap.json b/pfam_gap_rates/Guanylate_kin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43bd5f547f9c2c6569b09371efc035f508930751
--- /dev/null
+++ b/pfam_gap_rates/Guanylate_kin.gap.json
@@ -0,0 +1 @@
+{"family": "Guanylate_kin", "n_seqs": 3854, "length": 193, "gap_rates": [0.9460300985988583, 0.660352880124546, 0.4774260508562532, 0.2433834976647639, 0.1442656979761287, 0.1388168137000519, 0.1305137519460301, 0.12895692786715102, 0.12740010378827193, 0.12610275038920601, 0.12610275038920601, 0.16709911779968864, 0.16658017644006226, 0.16476388168137002, 0.12298910223144785, 0.12247016087182148, 0.12221069019200831, 0.12195121951219512, 0.12169174883238194, 0.12247016087182148, 0.12532433834976647, 0.12221069019200831, 0.14348728593668916, 0.1276595744680851, 0.1344058121432278, 0.14193046185781008, 0.16294758692267775, 0.16865594187856772, 0.2309289050337312, 0.230669434353918, 0.9439543331603529, 0.1855215360664245, 0.9348728593668916, 0.10482615464452517, 0.08899844317592112, 0.09107420861442657, 0.08692267773741567, 0.08303061754021795, 0.07939802802283343, 0.07939802802283343, 0.08017644006227297, 0.08017644006227297, 0.07991696938245978, 0.08095485210171251, 0.08017644006227297, 0.1333679294239751, 0.1307732226258433, 0.12999481058640375, 0.12454592631032693, 0.12428645563051376, 0.1193565127140633, 0.12013492475350285, 0.11883757135443695, 0.11728074727555786, 0.11650233523611832, 0.11442656979761287, 0.06824078879086663, 0.06850025947067981, 0.06694343539180073, 0.06564608199273482, 0.06305137519460301, 0.06512714063310845, 0.07524649714582252, 0.0783601453035807, 0.07913855734302024, 0.07602490918526207, 0.06694343539180073, 0.06071613907628438, 0.05864037363777893, 0.05786196159833939, 0.05708354955889985, 0.057602490918526206, 0.056824078879086665, 0.056824078879086665, 0.05889984431759211, 0.8967306694343539, 0.05889984431759211, 0.06175402179553711, 0.09782044628956928, 0.07187337830825116, 0.07265179034769072, 0.07291126102750389, 0.0742086144265698, 0.07939802802283343, 0.07939802802283343, 0.08043591074208614, 0.07394914374675661, 0.07265179034769072, 0.07576543850544888, 0.07680332122470161, 0.08017644006227297, 0.08406850025947069, 0.08147379346133887, 0.07991696938245978, 0.07810067462376752, 0.07732226258432798, 0.07758173326414115, 0.07654385054488842, 0.9460300985988583, 0.9400622729631551, 0.07524649714582252, 0.07472755578619616, 0.07602490918526207, 0.07732226258432798, 0.07758173326414115, 0.07887908666320706, 0.9449922158796056, 0.08095485210171251, 0.07861961598339387, 0.07784120394395433, 0.0796574987026466, 0.08121432278152568, 0.08043591074208614, 0.0796574987026466, 0.08017644006227297, 0.08303061754021795, 0.08303061754021795, 0.8409444732745199, 0.08277114686040478, 0.07991696938245978, 0.07913855734302024, 0.07887908666320706, 0.07913855734302024, 0.07861961598339387, 0.0783601453035807, 0.07887908666320706, 0.07939802802283343, 0.096004151530877, 0.08432797093928386, 0.08484691229891023, 0.08640373637778931, 0.08251167618059159, 0.08199273482096522, 0.08277114686040478, 0.0838090295796575, 0.0851063829787234, 0.08640373637778931, 0.08847950181629476, 0.1263622210690192, 0.12221069019200831, 0.12065386611312921, 0.12039439543331604, 0.12169174883238194, 0.11053450960041515, 0.1141670991177997, 0.11209133367929423, 0.10897768552153607, 0.11157239231966788, 0.10975609756097561, 0.10897768552153607, 0.11105345096004152, 0.11312921639854696, 0.11312921639854696, 0.1139076284379865, 0.11520498183705241, 0.11702127659574468, 0.1196159833938765, 0.12065386611312921, 0.12298910223144785, 0.12480539699014011, 0.12584327970939285, 0.12714063310845874, 0.1292163985469642, 0.1333679294239751, 0.4244940321743643, 0.29475869226777374, 0.8578100674623768, 0.895433316035288, 0.7208095485210171, 0.13933575505967827, 0.13959522573949143, 0.1414115204981837, 0.14218993253762324, 0.14322781525687597, 0.14478463933575506, 0.14634146341463414, 0.14763881681370006, 0.15023352361183187, 0.15282823040996368, 0.15360664244940322, 0.15438505448884277, 0.15594187856772185, 0.1580176440062273, 0.1606123508043591, 0.1637259989621173, 0.16917488323819407, 0.18370524130773222, 0.19460300985988582, 0.21613907628437987, 0.24675661650233524, 0.37856772184743126, 0.5620134924753503, 0.9387649195640893], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HAP2-GCS1.gap.json b/pfam_gap_rates/HAP2-GCS1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff5bcedf38a53d9072ffcb12aab3575dcc31962a
--- /dev/null
+++ b/pfam_gap_rates/HAP2-GCS1.gap.json
@@ -0,0 +1 @@
+{"family": "HAP2-GCS1", "n_seqs": 113, "length": 49, "gap_rates": [0.20353982300884957, 0.07964601769911504, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.05309734513274336, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.07079646017699115, 0.017699115044247787, 0.02654867256637168, 0.035398230088495575, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.831858407079646, 0.02654867256637168, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.02654867256637168, 0.5398230088495575], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HBB.gap.json b/pfam_gap_rates/HBB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c22c1b28bc712db51fc1a73f08731adb17c438bc
--- /dev/null
+++ b/pfam_gap_rates/HBB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HELP.gap.json b/pfam_gap_rates/HELP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d65cd55ec33faf4a1be036ca1f1695317a31bcbd
--- /dev/null
+++ b/pfam_gap_rates/HELP.gap.json
@@ -0,0 +1 @@
+{"family": "HELP", "n_seqs": 442, "length": 76, "gap_rates": [0.8461538461538461, 0.7647058823529411, 0.6447963800904978, 0.6221719457013575, 0.6063348416289592, 0.5995475113122172, 0.579185520361991, 0.5542986425339367, 0.5339366515837104, 0.5226244343891403, 0.49321266968325794, 0.4841628959276018, 0.4502262443438914, 0.42081447963800905, 0.4004524886877828, 0.38687782805429866, 0.36877828054298645, 0.37104072398190047, 0.5452488687782805, 0.8619909502262444, 0.5407239819004525, 0.47058823529411764, 0.41855203619909503, 0.30995475113122173, 0.2895927601809955, 0.3733031674208145, 0.2171945701357466, 0.1832579185520362, 0.11312217194570136, 0.09728506787330317, 0.08823529411764706, 0.08144796380090498, 0.09728506787330317, 0.058823529411764705, 0.04072398190045249, 0.033936651583710405, 0.033936651583710405, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.038461538461538464, 0.038461538461538464, 0.02262443438914027, 0.020361990950226245, 0.020361990950226245, 0.01809954751131222, 0.01809954751131222, 0.029411764705882353, 0.027149321266968326, 0.01809954751131222, 0.01809954751131222, 0.02262443438914027, 0.020361990950226245, 0.024886877828054297, 0.024886877828054297, 0.027149321266968326, 0.027149321266968326, 0.8280542986425339, 0.03619909502262444, 0.029411764705882353, 0.027149321266968326, 0.027149321266968326, 0.024886877828054297, 0.024886877828054297, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.029411764705882353, 0.03167420814479638, 0.03167420814479638, 0.04751131221719457, 0.05429864253393665, 0.14479638009049775, 0.8257918552036199], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HGD-D.gap.json b/pfam_gap_rates/HGD-D.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc9326738221b2ff2ebe5aabb0f6dd083ecfc9d3
--- /dev/null
+++ b/pfam_gap_rates/HGD-D.gap.json
@@ -0,0 +1 @@
+{"family": "HGD-D", "n_seqs": 1301, "length": 497, "gap_rates": [0.4465795541890853, 0.35972328977709456, 0.2444273635664873, 0.19907763259031513, 0.1813989239046887, 0.1760184473481937, 0.1706379707916987, 0.16295157571099156, 0.16218293620292082, 0.15987701767870868, 0.15910837817063797, 0.15757109915449655, 0.1652574942352037, 0.4550345887778632, 0.4573405073020753, 0.4488854727132975, 0.8063028439661799, 0.8070714834742506, 0.8508839354342813, 0.8554957724827056, 0.9208301306687163, 0.8531898539584934, 0.8078401229823213, 0.8070714834742506, 0.8016910069177555, 0.42890084550345886, 0.5088393543428132, 0.4404304381245196, 0.7747886241352806, 0.16295157571099156, 0.13297463489623368, 0.14296694850115296, 0.1299000768639508, 0.14142966948501154, 0.11683320522674866, 0.11606456571867795, 0.11299000768639508, 0.10914681014604151, 0.10914681014604151, 0.10914681014604151, 0.10914681014604151, 0.42198308993082245, 0.41275941583397385, 0.7624903920061491, 0.11145272867025365, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HMGL-like.gap.json b/pfam_gap_rates/HMGL-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b742e34d8c56cf6352e0a9ebd7f66ef5c1d89b70
--- /dev/null
+++ b/pfam_gap_rates/HMGL-like.gap.json
@@ -0,0 +1 @@
+{"family": "HMGL-like", "n_seqs": 5000, "length": 321, "gap_rates": [0.844, 0.287, 0.1784, 0.092, 0.0838, 0.0808, 0.0802, 0.0794, 0.0692, 0.068, 0.0678, 0.068, 0.068, 0.0672, 0.0674, 0.0798, 0.7802, 0.0718, 0.0672, 0.0644, 0.0622, 0.0618, 0.0614, 0.061, 0.061, 0.061, 0.0612, 0.0612, 0.0598, 0.0598, 0.0596, 0.058, 0.0574, 0.057, 0.0584, 0.0596, 0.9422, 0.9414, 0.0572, 0.0562, 0.0562, 0.056, 0.055, 0.055, 0.0546, 0.5696, 0.5854, 0.5862, 0.7444, 0.9402, 0.9366, 0.5864, 0.586, 0.573, 0.5634, 0.0558, 0.0654, 0.066, 0.0644, 0.0648, 0.0658, 0.2556, 0.1208, 0.0666, 0.0636, 0.0622, 0.0572, 0.0576, 0.058, 0.058, 0.0604, 0.0596, 0.0586, 0.0592, 0.059, 0.072, 0.0684, 0.0732, 0.8394, 0.8426, 0.8488, 0.8456, 0.8406, 0.8334, 0.1496, 0.5288, 0.8548, 0.9036, 0.9192, 0.9284, 0.9124, 0.8878, 0.5624, 0.4434, 0.1356, 0.0608, 0.0582, 0.0598, 0.0586, 0.0614, 0.058, 0.0572, 0.0558, 0.0554, 0.055, 0.0554, 0.0546, 0.055, 0.0548, 0.0544, 0.0554, 0.3926, 0.3812, 0.3738, 0.3534, 0.0554, 0.0538, 0.053, 0.0518, 0.0504, 0.0496, 0.0494, 0.049, 0.0492, 0.049, 0.0498, 0.0492, 0.0492, 0.049, 0.3154, 0.2912, 0.2912, 0.2402, 0.2382, 0.243, 0.2356, 0.2328, 0.2292, 0.2356, 0.2362, 0.2428, 0.2344, 0.232, 0.0512, 0.0466, 0.045, 0.0442, 0.041, 0.0398, 0.0382, 0.0356, 0.0352, 0.0368, 0.0372, 0.0378, 0.036, 0.0358, 0.0386, 0.0474, 0.0506, 0.5598, 0.6592, 0.6802, 0.9252, 0.863, 0.6744, 0.651, 0.5402, 0.0598, 0.0668, 0.0552, 0.0454, 0.0374, 0.037, 0.0352, 0.0324, 0.0332, 0.932, 0.9328, 0.9226, 0.0308, 0.0294, 0.0288, 0.0286, 0.028, 0.0276, 0.0276, 0.0272, 0.027, 0.0266, 0.0258, 0.026, 0.0258, 0.0258, 0.0258, 0.0266, 0.0262, 0.8636, 0.8672, 0.875, 0.8708, 0.8668, 0.8532, 0.028, 0.0256, 0.025, 0.025, 0.0254, 0.0254, 0.025, 0.025, 0.0256, 0.0248, 0.0248, 0.0248, 0.0246, 0.0248, 0.0248, 0.0252, 0.0252, 0.0256, 0.0256, 0.0256, 0.0252, 0.026, 0.0248, 0.025, 0.0254, 0.0254, 0.0256, 0.0278, 0.029, 0.0276, 0.0272, 0.7136, 0.6826, 0.5752, 0.3336, 0.0328, 0.0288, 0.0258, 0.0264, 0.0252, 0.0248, 0.025, 0.0248, 0.0248, 0.0252, 0.0246, 0.0246, 0.024, 0.0234, 0.0244, 0.0242, 0.0244, 0.0244, 0.0244, 0.0242, 0.0244, 0.0246, 0.0244, 0.025, 0.025, 0.0252, 0.0254, 0.0258, 0.0252, 0.0252, 0.0254, 0.0256, 0.0262, 0.0264, 0.0268, 0.027, 0.0268, 0.8248, 0.8254, 0.8256, 0.8256, 0.8252, 0.8248, 0.0274, 0.0278, 0.0276, 0.028, 0.0282, 0.0282, 0.028, 0.0282, 0.0282, 0.0288, 0.0294, 0.0304, 0.032, 0.0342, 0.0378, 0.0418, 0.052, 0.0648, 0.0796, 0.766, 0.8492, 0.7752, 0.6868, 0.0968, 0.105, 0.1112, 0.1134, 0.115, 0.1166, 0.1206, 0.1246, 0.1284, 0.1334, 0.1428, 0.1564, 0.179, 0.2428, 0.33, 0.5028, 0.6568], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HNF-1_N.gap.json b/pfam_gap_rates/HNF-1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77b37f243746cd270fe72b0f4fd99238e4848634
--- /dev/null
+++ b/pfam_gap_rates/HNF-1_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HNOB.gap.json b/pfam_gap_rates/HNOB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd4492b065897839b6ed142f0e493ea26d4fbaa1
--- /dev/null
+++ b/pfam_gap_rates/HNOB.gap.json
@@ -0,0 +1 @@
+{"family": "HNOB", "n_seqs": 549, "length": 169, "gap_rates": [0.3551912568306011, 0.273224043715847, 0.26958105646630237, 0.2604735883424408, 0.2568306010928962, 0.2550091074681239, 0.25318761384335153, 0.25318761384335153, 0.25136612021857924, 0.2495446265938069, 0.2459016393442623, 0.23861566484517305, 0.23497267759562843, 0.23132969034608378, 0.22404371584699453, 0.22404371584699453, 0.22404371584699453, 0.22404371584699453, 0.22404371584699453, 0.22404371584699453, 0.2222222222222222, 0.2222222222222222, 0.2204007285974499, 0.2204007285974499, 0.2204007285974499, 0.2058287795992714, 0.20036429872495445, 0.19489981785063754, 0.1912568306010929, 0.20218579234972678, 0.2859744990892532, 0.6211293260473588, 0.16757741347905283, 0.1657559198542805, 0.1657559198542805, 0.16393442622950818, 0.16393442622950818, 0.16029143897996356, 0.15846994535519127, 0.151183970856102, 0.1493624772313297, 0.1493624772313297, 0.14754098360655737, 0.1493624772313297, 0.14754098360655737, 0.12750455373406194, 0.11839708561020036, 0.11657559198542805, 0.1092896174863388, 0.1092896174863388, 0.10746812386156648, 0.10746812386156648, 0.10746812386156648, 0.10564663023679417, 0.10382513661202186, 0.10200364298724955, 0.10018214936247723, 0.0965391621129326, 0.07468123861566485, 0.06739526411657559, 0.051001821493624776, 0.051001821493624776, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04189435336976321, 0.04007285974499089, 0.04007285974499089, 0.03825136612021858, 0.03825136612021858, 0.04007285974499089, 0.04189435336976321, 0.04189435336976321, 0.04371584699453552, 0.04371584699453552, 0.37340619307832423, 0.04553734061930783, 0.04189435336976321, 0.03825136612021858, 0.03825136612021858, 0.03642987249544627, 0.03460837887067395, 0.03460837887067395, 0.03460837887067395, 0.29690346083788705, 0.2204007285974499, 0.04189435336976321, 0.04553734061930783, 0.9216757741347905, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03825136612021858, 0.03460837887067395, 0.03460837887067395, 0.03278688524590164, 0.03460837887067395, 0.03460837887067395, 0.8269581056466302, 0.03460837887067395, 0.03278688524590164, 0.6703096539162113, 0.03460837887067395, 0.03460837887067395, 0.03460837887067395, 0.03278688524590164, 0.051001821493624776, 0.2459016393442623, 0.03825136612021858, 0.03460837887067395, 0.8743169398907104, 0.03642987249544627, 0.03642987249544627, 0.04007285974499089, 0.04007285974499089, 0.04007285974499089, 0.04007285974499089, 0.04007285974499089, 0.04007285974499089, 0.04007285974499089, 0.04007285974499089, 0.04189435336976321, 0.8925318761384335, 0.1092896174863388, 0.052823315118397086, 0.052823315118397086, 0.0546448087431694, 0.04918032786885246, 0.04735883424408015, 0.04735883424408015, 0.04735883424408015, 0.04735883424408015, 0.04735883424408015, 0.04735883424408015, 0.0546448087431694, 0.056466302367941715, 0.058287795992714025, 0.3442622950819672, 0.056466302367941715, 0.056466302367941715, 0.056466302367941715, 0.056466302367941715, 0.056466302367941715, 0.058287795992714025, 0.058287795992714025, 0.060109289617486336, 0.06375227686703097, 0.0692167577413479, 0.07103825136612021, 0.07468123861566485, 0.07650273224043716, 0.07650273224043716, 0.47176684881602915, 0.08014571948998178, 0.08014571948998178, 0.08743169398907104, 0.12021857923497267, 0.14207650273224043, 0.15846994535519127, 0.1657559198542805, 0.18032786885245902, 0.20036429872495445, 0.3005464480874317, 0.7431693989071039], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HNOBA.gap.json b/pfam_gap_rates/HNOBA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86d76fcfb35541389dc3be304d3d15327566e690
--- /dev/null
+++ b/pfam_gap_rates/HNOBA.gap.json
@@ -0,0 +1 @@
+{"family": "HNOBA", "n_seqs": 736, "length": 231, "gap_rates": [0.7581521739130435, 0.6019021739130435, 0.5842391304347826, 0.5760869565217391, 0.5665760869565217, 0.5557065217391305, 0.5516304347826086, 0.5516304347826086, 0.5516304347826086, 0.5516304347826086, 0.5516304347826086, 0.5516304347826086, 0.5516304347826086, 0.5516304347826086, 0.5516304347826086, 0.5516304347826086, 0.5502717391304348, 0.5502717391304348, 0.5502717391304348, 0.5516304347826086, 0.5502717391304348, 0.5502717391304348, 0.5502717391304348, 0.5502717391304348, 0.5475543478260869, 0.5448369565217391, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.8777173913043478, 0.7051630434782609, 0.6413043478260869, 0.5448369565217391, 0.5475543478260869, 0.5502717391304348, 0.5516304347826086, 0.5516304347826086, 0.5448369565217391, 0.5448369565217391, 0.5448369565217391, 0.5448369565217391, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5407608695652174, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.8641304347826086, 0.5421195652173914, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5434782608695652, 0.5448369565217391, 0.5448369565217391, 0.5448369565217391, 0.5475543478260869, 0.5475543478260869, 0.5502717391304348, 0.5516304347826086, 0.5502717391304348, 0.5516304347826086, 0.5557065217391305, 0.5529891304347826, 0.5543478260869565, 0.5543478260869565, 0.5557065217391305, 0.5570652173913043, 0.5720108695652174, 0.5788043478260869, 0.5815217391304348, 0.5842391304347826, 0.59375, 0.6005434782608695, 0.7309782608695652, 0.7364130434782609, 0.748641304347826, 0.779891304347826, 0.8369565217391305, 0.8355978260869565, 0.8315217391304348, 0.8247282608695652, 0.8301630434782609, 0.8315217391304348, 0.8505434782608695, 0.8614130434782609, 0.8546195652173914, 0.8546195652173914, 0.8627717391304348, 0.8627717391304348, 0.8559782608695652, 0.8559782608695652, 0.8505434782608695, 0.8328804347826086, 0.8233695652173914, 0.8152173913043478, 0.7472826086956522, 0.7160326086956522, 0.625, 0.9307065217391305, 0.9347826086956522, 0.938858695652174, 0.9456521739130435, 0.9470108695652174, 0.9497282608695652, 0.9470108695652174, 0.9470108695652174, 0.9442934782608695, 0.938858695652174, 0.9334239130434783, 0.9307065217391305, 0.5869565217391305, 0.5842391304347826, 0.5733695652173914, 0.563858695652174, 0.5625, 0.5584239130434783, 0.5584239130434783, 0.5557065217391305, 0.5529891304347826, 0.5516304347826086, 0.5394021739130435, 0.5407608695652174, 0.5407608695652174, 0.5380434782608695, 0.5394021739130435, 0.5353260869565217, 0.5353260869565217, 0.5353260869565217, 0.5394021739130435, 0.532608695652174, 0.532608695652174, 0.532608695652174, 0.532608695652174, 0.532608695652174, 0.532608695652174, 0.532608695652174, 0.532608695652174, 0.5353260869565217, 0.5353260869565217, 0.5353260869565217, 0.5353260869565217, 0.5339673913043478, 0.5339673913043478, 0.53125, 0.532608695652174, 0.53125, 0.53125, 0.53125, 0.529891304347826, 0.5271739130434783, 0.5258152173913043, 0.5271739130434783, 0.5258152173913043, 0.5244565217391305, 0.5244565217391305, 0.5258152173913043, 0.5271739130434783, 0.5258152173913043, 0.5230978260869565, 0.5217391304347826, 0.5217391304347826, 0.5122282608695652, 0.5067934782608695, 0.5040760869565217, 0.5, 0.4986413043478261, 0.49728260869565216, 0.49184782608695654, 0.48233695652173914, 0.4782608695652174, 0.4701086956521739, 0.46603260869565216, 0.4578804347826087, 0.43478260869565216, 0.4076086956521739, 0.38315217391304346, 0.328804347826087, 0.3179347826086957, 0.6589673913043478, 0.2798913043478261, 0.22554347826086957, 0.1875, 0.15760869565217392, 0.14945652173913043, 0.13858695652173914, 0.1331521739130435, 0.12771739130434784, 0.12364130434782608, 0.11956521739130435, 0.11956521739130435, 0.11956521739130435, 0.11548913043478261, 0.11956521739130435, 0.11684782608695653, 0.8288043478260869, 0.8288043478260869, 0.8288043478260869, 0.8288043478260869, 0.11820652173913043, 0.11956521739130435, 0.12092391304347826, 0.12092391304347826, 0.12092391304347826, 0.11956521739130435, 0.12228260869565218, 0.12228260869565218, 0.125, 0.125, 0.13179347826086957, 0.1331521739130435, 0.1358695652173913, 0.13722826086956522, 0.13858695652173914, 0.13858695652173914, 0.13858695652173914, 0.13858695652173914, 0.14402173913043478, 0.14402173913043478, 0.1453804347826087, 0.1453804347826087, 0.15625, 0.18885869565217392], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_24.gap.json b/pfam_gap_rates/HTH_24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6515165d193cff59d51a26d653f577c70dea541
--- /dev/null
+++ b/pfam_gap_rates/HTH_24.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_24", "n_seqs": 5000, "length": 48, "gap_rates": [0.547, 0.3692, 0.306, 0.244, 0.2082, 0.1714, 0.1228, 0.0822, 0.0722, 0.0578, 0.0426, 0.0372, 0.035, 0.0316, 0.0302, 0.023, 0.0168, 0.008, 0.005, 0.0032, 0.0016, 0.0014, 0.0012, 0.0006, 0.0004, 0.0004, 0.0004, 0.0002, 0.0002, 0.0004, 0.0004, 0.0006, 0.0008, 0.0012, 0.0016, 0.0022, 0.0032, 0.0036, 0.0068, 0.0108, 0.0158, 0.0208, 0.0244, 0.032, 0.0432, 0.067, 0.0988, 0.4104], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_36.gap.json b/pfam_gap_rates/HTH_36.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a57871f6b482d0efd5c58df8b177dbbcb2a37af1
--- /dev/null
+++ b/pfam_gap_rates/HTH_36.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_36", "n_seqs": 528, "length": 57, "gap_rates": [0.8996212121212122, 0.4431818181818182, 0.24431818181818182, 0.20265151515151514, 0.17613636363636365, 0.1268939393939394, 0.07954545454545454, 0.06439393939393939, 0.045454545454545456, 0.030303030303030304, 0.028409090909090908, 0.028409090909090908, 0.02462121212121212, 0.01893939393939394, 0.015151515151515152, 0.013257575757575758, 0.007575757575757576, 0.007575757575757576, 0.10227272727272728, 0.011363636363636364, 0.007575757575757576, 0.005681818181818182, 0.001893939393939394, 0.6193181818181818, 0.08901515151515152, 0.07765151515151515, 0.07386363636363637, 0.0, 0.0, 0.0, 0.0, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.9375, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.001893939393939394, 0.003787878787878788, 0.013257575757575758, 0.015151515151515152, 0.017045454545454544, 0.02462121212121212, 0.030303030303030304, 0.045454545454545456, 0.06818181818181818, 0.11742424242424243, 0.19128787878787878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_6.gap.json b/pfam_gap_rates/HTH_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9a065c760f39471f50f7372221a39f17b40159f
--- /dev/null
+++ b/pfam_gap_rates/HTH_6.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_6", "n_seqs": 2684, "length": 76, "gap_rates": [0.8826378539493294, 0.7585692995529061, 0.5193740685543964, 0.4128166915052161, 0.3263785394932936, 0.28241430700447095, 0.2596870342771982, 0.2451564828614009, 0.2321162444113264, 0.20752608047690016, 0.1620715350223547, 0.11885245901639344, 0.088301043219076, 0.06929955290611028, 0.06110283159463487, 0.05663189269746647, 0.04992548435171386, 0.046572280178837556, 0.039120715350223545, 0.030923994038748136, 0.02645305514157973, 0.020491803278688523, 0.01788375558867362, 0.01564828614008942, 0.013785394932935917, 0.012295081967213115, 0.011549925484351714, 0.012295081967213115, 0.013040238450074515, 0.012295081967213115, 0.013785394932935917, 0.020491803278688523, 0.013785394932935917, 0.00894187779433681, 0.0037257824143070045, 0.0026080476900149033, 0.0022354694485842027, 0.0014903129657228018, 0.0011177347242921013, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.00037257824143070045, 0.00037257824143070045, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00037257824143070045, 0.00037257824143070045, 0.00037257824143070045, 0.0007451564828614009, 0.0011177347242921013, 0.0018628912071535022, 0.0022354694485842027, 0.0029806259314456036, 0.0026080476900149033, 0.0033532041728763042, 0.0067064083457526085, 0.006333830104321907, 0.007078986587183309, 0.009687034277198211, 0.013040238450074515, 0.02645305514157973, 0.07190760059612519, 0.0912816691505216, 0.10953800298062594, 0.13897168405365126, 0.19970193740685543, 0.29731743666169896, 0.4258569299552906, 0.6102831594634873, 0.7801788375558867], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_CodY.gap.json b/pfam_gap_rates/HTH_CodY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e5e126058a5d5a9eab83ab81c6466d194fd5152
--- /dev/null
+++ b/pfam_gap_rates/HTH_CodY.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_CodY", "n_seqs": 327, "length": 61, "gap_rates": [0.6483180428134556, 0.012232415902140673, 0.009174311926605505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0030581039755351682, 0.0030581039755351682, 0.0030581039755351682, 0.01834862385321101, 0.03363914373088685, 0.06422018348623854, 0.11314984709480122, 0.22324159021406728, 0.47706422018348627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HXXEE.gap.json b/pfam_gap_rates/HXXEE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..752212f683516c25dd01eb4f2294613dbe3a0005
--- /dev/null
+++ b/pfam_gap_rates/HXXEE.gap.json
@@ -0,0 +1 @@
+{"family": "HXXEE", "n_seqs": 173, "length": 148, "gap_rates": [0.5895953757225434, 0.3063583815028902, 0.15606936416184972, 0.10982658959537572, 0.10404624277456648, 0.08092485549132948, 0.08092485549132948, 0.07514450867052024, 0.07514450867052024, 0.07514450867052024, 0.06358381502890173, 0.06358381502890173, 0.06358381502890173, 0.06358381502890173, 0.06358381502890173, 0.06358381502890173, 0.7283236994219653, 0.8323699421965318, 0.8439306358381503, 0.9364161849710982, 0.8439306358381503, 0.7687861271676301, 0.6647398843930635, 0.08092485549132948, 0.07514450867052024, 0.07514450867052024, 0.07514450867052024, 0.07514450867052024, 0.09248554913294797, 0.09826589595375723, 0.12138728323699421, 0.11560693641618497, 0.14450867052023122, 0.1791907514450867, 0.18497109826589594, 0.7283236994219653, 0.30057803468208094, 0.23699421965317918, 0.6820809248554913, 0.9075144508670521, 0.5086705202312138, 0.20809248554913296, 0.3583815028901734, 0.4393063583815029, 0.5549132947976878, 0.5953757225433526, 0.6473988439306358, 0.6763005780346821, 0.7456647398843931, 0.8265895953757225, 0.9248554913294798, 0.8554913294797688, 0.791907514450867, 0.7052023121387283, 0.6705202312138728, 0.6127167630057804, 0.5838150289017341, 0.47398843930635837, 0.37572254335260113, 0.3352601156069364, 0.1907514450867052, 0.4161849710982659, 0.3872832369942196, 0.3236994219653179, 0.3063583815028902, 0.28901734104046245, 0.2832369942196532, 0.2658959537572254, 0.8208092485549133, 0.23121387283236994, 0.21965317919075145, 0.16184971098265896, 0.13872832369942195, 0.1329479768786127, 0.046242774566473986, 0.046242774566473986, 0.04046242774566474, 0.03468208092485549, 0.03468208092485549, 0.04046242774566474, 0.05202312138728324, 0.046242774566473986, 0.046242774566473986, 0.4682080924855491, 0.4393063583815029, 0.41040462427745666, 0.9479768786127167, 0.5491329479768786, 0.3930635838150289, 0.8554913294797688, 0.3699421965317919, 0.3468208092485549, 0.06358381502890173, 0.08092485549132948, 0.27167630057803466, 0.23121387283236994, 0.1676300578034682, 0.017341040462427744, 0.011560693641618497, 0.023121387283236993, 0.011560693641618497, 0.011560693641618497, 0.017341040462427744, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.27167630057803466, 0.017341040462427744, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.028901734104046242, 0.9190751445086706, 0.011560693641618497, 0.34104046242774566, 0.011560693641618497, 0.011560693641618497, 0.8554913294797688, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.017341040462427744, 0.011560693641618497, 0.011560693641618497, 0.8092485549132948, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.017341040462427744, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.2658959537572254, 0.046242774566473986, 0.08092485549132948, 0.06936416184971098, 0.09248554913294797, 0.17341040462427745, 0.2947976878612717, 0.653179190751445], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hairy_orange.gap.json b/pfam_gap_rates/Hairy_orange.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68023381c1382922b13c57fbdfbb5d8c3510e4f0
--- /dev/null
+++ b/pfam_gap_rates/Hairy_orange.gap.json
@@ -0,0 +1 @@
+{"family": "Hairy_orange", "n_seqs": 441, "length": 45, "gap_rates": [0.3968253968253968, 0.24036281179138322, 0.15873015873015872, 0.06575963718820861, 0.011337868480725623, 0.011337868480725623, 0.009070294784580499, 0.009070294784580499, 0.009070294784580499, 0.009070294784580499, 0.009070294784580499, 0.006802721088435374, 0.0045351473922902496, 0.0045351473922902496, 0.0045351473922902496, 0.0045351473922902496, 0.045351473922902494, 0.05215419501133787, 0.05442176870748299, 0.049886621315192746, 0.013605442176870748, 0.9365079365079365, 0.9297052154195011, 0.1564625850340136, 0.12244897959183673, 0.05668934240362812, 0.013605442176870748, 0.7233560090702947, 0.6009070294784581, 0.013605442176870748, 0.013605442176870748, 0.011337868480725623, 0.8866213151927438, 0.011337868480725623, 0.011337868480725623, 0.011337868480725623, 0.011337868480725623, 0.011337868480725623, 0.015873015873015872, 0.018140589569160998, 0.036281179138321996, 0.12244897959183673, 0.20634920634920634, 0.29931972789115646, 0.7664399092970522], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ham1p_like.gap.json b/pfam_gap_rates/Ham1p_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbc1f6f116f04f69f7f1d2c5e8520048aa38fe25
--- /dev/null
+++ b/pfam_gap_rates/Ham1p_like.gap.json
@@ -0,0 +1 @@
+{"family": "Ham1p_like", "n_seqs": 2594, "length": 212, "gap_rates": [0.15034695451040864, 0.07208943716268311, 0.0551272166538165, 0.0543562066306862, 0.05397070161912105, 0.0528141865844256, 0.0520431765612953, 0.0520431765612953, 0.051657671549730146, 0.05127216653816499, 0.05127216653816499, 0.05127216653816499, 0.050501156515034694, 0.050501156515034694, 0.050501156515034694, 0.050501156515034694, 0.05088666152659985, 0.05088666152659985, 0.12875867386276021, 0.3338473400154202, 0.8442559753276793, 0.9248265227447957, 0.8843484965304549, 0.4248265227447957, 0.19429452582883577, 0.09946029298380879, 0.05127216653816499, 0.12606013878180417, 0.110254433307633, 0.9105628373168851, 0.9390902081727063, 0.2644564379336931, 0.06013878180416345, 0.06013878180416345, 0.08635312259059368, 0.08943716268311488, 0.4533538936006168, 0.058982266769468, 0.8573631457208943, 0.23785659213569776, 0.04240555127216654, 0.037393986121819586, 0.9252120277563608, 0.047802621434078645, 0.034309946029298384, 0.03199691595990748, 0.03199691595990748, 0.03199691595990748, 0.9101773323053199, 0.03161141094834233, 0.03161141094834233, 0.03161141094834233, 0.03161141094834233, 0.03161141094834233, 0.03084040092521203, 0.030454895913646876, 0.03084040092521203, 0.03084040092521203, 0.03084040092521203, 0.03084040092521203, 0.03161141094834233, 0.03238242097147263, 0.03161141094834233, 0.03199691595990748, 0.03238242097147263, 0.2663839629915189, 0.9441017733230532, 0.2810331534309946, 0.22089437162683115, 0.03161141094834233, 0.7401696222050886, 0.7779491133384734, 0.7363145720894372, 0.030454895913646876, 0.029298380878951428, 0.027756360832690823, 0.027756360832690823, 0.027756360832690823, 0.027756360832690823, 0.027756360832690823, 0.027756360832690823, 0.027756360832690823, 0.027370855821125674, 0.027370855821125674, 0.027370855821125674, 0.028141865844255976, 0.027756360832690823, 0.028527370855821126, 0.026599845797995375, 0.026985350809560524, 0.026599845797995375, 0.026985350809560524, 0.027370855821125674, 0.029298380878951428, 0.030069390902081727, 0.03199691595990748, 0.03238242097147263, 0.03315343099460293, 0.3608326908249807, 0.648804934464148, 0.9371626831148805, 0.9070932922127988, 0.5161912104857364, 0.3369313801079414, 0.03469545104086353, 0.08095605242868158, 0.563993831919815, 0.9348496530454896, 0.8912875867386276, 0.42521202775636086, 0.04394757131842714, 0.04279105628373169, 0.03932151117964534, 0.036237471087124135, 0.03392444101773323, 0.03315343099460293, 0.034309946029298384, 0.03353893600616808, 0.03315343099460293, 0.03276792598303778, 0.03353893600616808, 0.03353893600616808, 0.03546646106399383, 0.04510408635312259, 0.2220508866615266, 0.48959136468774095, 0.9294525828835775, 0.5104086353122591, 0.24826522744795682, 0.2104857363145721, 0.03315343099460293, 0.03161141094834233, 0.03122590593677718, 0.03122590593677718, 0.03161141094834233, 0.03199691595990748, 0.03122590593677718, 0.03161141094834233, 0.03199691595990748, 0.03199691595990748, 0.03238242097147263, 0.03700848111025443, 0.03855050115651504, 0.17848882035466462, 0.8084040092521203, 0.6407093292212799, 0.04317656129529684, 0.03700848111025443, 0.03700848111025443, 0.03546646106399383, 0.04124903623747109, 0.04163454124903624, 0.04047802621434079, 0.04124903623747109, 0.04047802621434079, 0.038164996144949885, 0.037393986121819586, 0.03662297609868928, 0.03662297609868928, 0.037393986121819586, 0.037393986121819586, 0.038164996144949885, 0.03970701619121048, 0.18388589051657672, 0.038936006168080184, 0.038164996144949885, 0.03932151117964534, 0.03970701619121048, 0.040863531225905934, 0.04163454124903624, 0.04279105628373169, 0.04394757131842714, 0.04124903623747109, 0.04047802621434079, 0.040092521202775636, 0.03970701619121048, 0.03970701619121048, 0.040092521202775636, 0.040863531225905934, 0.0520431765612953, 0.04163454124903624, 0.2725520431765613, 0.9240555127216654, 0.08712413261372398, 0.04356206630686199, 0.8188126445643793, 0.04279105628373169, 0.042020046260601386, 0.04279105628373169, 0.04394757131842714, 0.04548959136468774, 0.045875096376252894, 0.05705474171164225, 0.04664610639938319, 0.047031611410948346, 0.04934464148033924, 0.0551272166538165, 0.0582112567463377, 0.062066306861989204, 0.0659213569776407, 0.06630686198920586, 0.06669236700077101, 0.06746337702390132, 0.06823438704703161, 0.07016191210485737, 0.07016191210485737, 0.07170393215111796, 0.07864302235929067, 0.09020817270624518, 0.13107170393215112, 0.43754818812644564, 0.9441017733230532], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Helicase_C.gap.json b/pfam_gap_rates/Helicase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbf141e2f6c948e271928fe6778a194d04d2ff43
--- /dev/null
+++ b/pfam_gap_rates/Helicase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Helicase_C", "n_seqs": 5000, "length": 158, "gap_rates": [0.7746, 0.7216, 0.6498, 0.584, 0.5228, 0.4852, 0.455, 0.4262, 0.4208, 0.9356, 0.756, 0.5782, 0.3284, 0.27, 0.2176, 0.1914, 0.1744, 0.1582, 0.1498, 0.1428, 0.1364, 0.132, 0.13, 0.1296, 0.1286, 0.1266, 0.125, 0.1232, 0.948, 0.1206, 0.1274, 0.1664, 0.2008, 0.8548, 0.9094, 0.9286, 0.9054, 0.4492, 0.1856, 0.1412, 0.1286, 0.1428, 0.933, 0.9466, 0.9284, 0.397, 0.2596, 0.2054, 0.0912, 0.73, 0.8546, 0.9104, 0.9466, 0.928, 0.8824, 0.7878, 0.6664, 0.0662, 0.0518, 0.0468, 0.0414, 0.0396, 0.0364, 0.0338, 0.0326, 0.0314, 0.0518, 0.0438, 0.0288, 0.0232, 0.021, 0.0188, 0.0194, 0.0164, 0.0156, 0.0142, 0.0134, 0.0124, 0.0118, 0.0114, 0.0386, 0.885, 0.9366, 0.8064, 0.024, 0.0236, 0.0144, 0.0106, 0.0074, 0.8498, 0.0046, 0.0042, 0.004, 0.0036, 0.0032, 0.0036, 0.0036, 0.0038, 0.0038, 0.0036, 0.0036, 0.0042, 0.0048, 0.0054, 0.0198, 0.0376, 0.0124, 0.009, 0.01, 0.0092, 0.0094, 0.0128, 0.0104, 0.0102, 0.011, 0.011, 0.8526, 0.8654, 0.9384, 0.9496, 0.8892, 0.859, 0.7846, 0.0164, 0.0348, 0.0136, 0.8604, 0.8628, 0.8714, 0.8784, 0.8844, 0.8946, 0.909, 0.9264, 0.9358, 0.9332, 0.922, 0.908, 0.8934, 0.8828, 0.8766, 0.866, 0.861, 0.8602, 0.0132, 0.0126, 0.0138, 0.014, 0.0152, 0.0158, 0.0164, 0.017, 0.0186, 0.02, 0.0314, 0.0384, 0.1304, 0.474], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Helicase_C_4.gap.json b/pfam_gap_rates/Helicase_C_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bad0001ebe784534a937b7d83675b4b2b3acfab
--- /dev/null
+++ b/pfam_gap_rates/Helicase_C_4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Helo_like_N.gap.json b/pfam_gap_rates/Helo_like_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8442b808c75381382b56588c871ab29816fa50d6
--- /dev/null
+++ b/pfam_gap_rates/Helo_like_N.gap.json
@@ -0,0 +1 @@
+{"family": "Helo_like_N", "n_seqs": 225, "length": 223, "gap_rates": [0.3022222222222222, 0.21777777777777776, 0.19555555555555557, 0.1688888888888889, 0.16, 0.14222222222222222, 0.1511111111111111, 0.14222222222222222, 0.13777777777777778, 0.12, 0.1111111111111111, 0.10666666666666667, 0.10666666666666667, 0.10222222222222223, 0.09777777777777778, 0.10222222222222223, 0.08444444444444445, 0.08, 0.07111111111111111, 0.07555555555555556, 0.07111111111111111, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06222222222222222, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.07111111111111111, 0.06666666666666667, 0.07111111111111111, 0.07111111111111111, 0.07555555555555556, 0.06666666666666667, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.057777777777777775, 0.05333333333333334, 0.057777777777777775, 0.057777777777777775, 0.48444444444444446, 0.17333333333333334, 0.08888888888888889, 0.25333333333333335, 0.9333333333333333, 0.08888888888888889, 0.07555555555555556, 0.9377777777777778, 0.07555555555555556, 0.9288888888888889, 0.9377777777777778, 0.9333333333333333, 0.9288888888888889, 0.07111111111111111, 0.057777777777777775, 0.06222222222222222, 0.06222222222222222, 0.06666666666666667, 0.07555555555555556, 0.07111111111111111, 0.07111111111111111, 0.07555555555555556, 0.07555555555555556, 0.07555555555555556, 0.07111111111111111, 0.07111111111111111, 0.07555555555555556, 0.07555555555555556, 0.08, 0.08, 0.08, 0.08, 0.08444444444444445, 0.08888888888888889, 0.09333333333333334, 0.09333333333333334, 0.09333333333333334, 0.08888888888888889, 0.09333333333333334, 0.09333333333333334, 0.10666666666666667, 0.11555555555555555, 0.12444444444444444, 0.12444444444444444, 0.28888888888888886, 0.27555555555555555, 0.26222222222222225, 0.9111111111111111, 0.8488888888888889, 0.19555555555555557, 0.17777777777777778, 0.18222222222222223, 0.17333333333333334, 0.18666666666666668, 0.1688888888888889, 0.19111111111111112, 0.9377777777777778, 0.8577777777777778, 0.18666666666666668, 0.17777777777777778, 0.2311111111111111, 0.19111111111111112, 0.18222222222222223, 0.20444444444444446, 0.23555555555555555, 0.17777777777777778, 0.8533333333333334, 0.7244444444444444, 0.16444444444444445, 0.1688888888888889, 0.17333333333333334, 0.16444444444444445, 0.16444444444444445, 0.16444444444444445, 0.16444444444444445, 0.16444444444444445, 0.1688888888888889, 0.1688888888888889, 0.17333333333333334, 0.17777777777777778, 0.18222222222222223, 0.18666666666666668, 0.19111111111111112, 0.19111111111111112, 0.19111111111111112, 0.19111111111111112, 0.20444444444444446, 0.20444444444444446, 0.2088888888888889, 0.22666666666666666, 0.24888888888888888, 0.25333333333333335, 0.26666666666666666, 0.28444444444444444, 0.9244444444444444, 0.30666666666666664, 0.3244444444444444, 0.3288888888888889, 0.3377777777777778, 0.3377777777777778, 0.3511111111111111, 0.3466666666666667, 0.35555555555555557, 0.36, 0.38666666666666666, 0.40444444444444444, 0.44, 0.4622222222222222, 0.4622222222222222, 0.4533333333333333, 0.4533333333333333, 0.4622222222222222, 0.4711111111111111, 0.48444444444444446, 0.48, 0.49333333333333335, 0.49333333333333335, 0.5022222222222222, 0.5022222222222222, 0.5066666666666667, 0.5022222222222222, 0.52, 0.5333333333333333, 0.5466666666666666, 0.5511111111111111, 0.5555555555555556, 0.5555555555555556, 0.5733333333333334, 0.5822222222222222, 0.5911111111111111, 0.6, 0.6044444444444445, 0.6044444444444445, 0.6133333333333333, 0.72, 0.7022222222222222, 0.7022222222222222, 0.6844444444444444, 0.7066666666666667, 0.7066666666666667, 0.7111111111111111, 0.7022222222222222, 0.7111111111111111, 0.7111111111111111, 0.7244444444444444, 0.7244444444444444, 0.7244444444444444, 0.7288888888888889, 0.7333333333333333, 0.8044444444444444, 0.7377777777777778, 0.7377777777777778, 0.7422222222222222, 0.7555555555555555, 0.7555555555555555, 0.7688888888888888, 0.7733333333333333, 0.7822222222222223, 0.7911111111111111, 0.8, 0.8088888888888889, 0.8088888888888889, 0.8133333333333334, 0.8133333333333334, 0.8222222222222222, 0.8622222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HemS.gap.json b/pfam_gap_rates/HemS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b672d7074f9877f114a545d4e02d64734dc086c
--- /dev/null
+++ b/pfam_gap_rates/HemS.gap.json
@@ -0,0 +1 @@
+{"family": "HemS", "n_seqs": 263, "length": 136, "gap_rates": [0.40304182509505704, 0.13688212927756654, 0.10646387832699619, 0.10266159695817491, 0.10266159695817491, 0.09885931558935361, 0.09885931558935361, 0.09505703422053231, 0.09505703422053231, 0.09125475285171103, 0.09505703422053231, 0.11787072243346007, 0.09885931558935361, 0.9239543726235742, 0.07224334600760456, 0.049429657794676805, 0.049429657794676805, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.049429657794676805, 0.45627376425855515, 0.03802281368821293, 0.034220532319391636, 0.030418250950570342, 0.030418250950570342, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.4524714828897338, 0.026615969581749048, 0.026615969581749048, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.030418250950570342, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.026615969581749048, 0.034220532319391636, 0.9163498098859315, 0.022813688212927757, 0.019011406844106463, 0.015209125475285171, 0.015209125475285171, 0.015209125475285171, 0.015209125475285171, 0.011406844106463879, 0.011406844106463879, 0.015209125475285171, 0.015209125475285171, 0.019011406844106463, 0.022813688212927757, 0.026615969581749048, 0.026615969581749048, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.019011406844106463, 0.019011406844106463, 0.026615969581749048, 0.11406844106463879, 0.11026615969581749, 0.10266159695817491, 0.9467680608365019, 0.10266159695817491, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.026615969581749048, 0.026615969581749048, 0.030418250950570342, 0.030418250950570342, 0.03802281368821293, 0.03802281368821293, 0.045627376425855515, 0.49429657794676807, 0.5133079847908745, 0.4752851711026616, 0.053231939163498096, 0.053231939163498096, 0.057034220532319393, 0.057034220532319393, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.06463878326996197, 0.07984790874524715, 0.12547528517110265, 0.20912547528517111, 0.4068441064638783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HflK_N.gap.json b/pfam_gap_rates/HflK_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3da481c8ff807e1a25e6a269efbc7f9817e71679
--- /dev/null
+++ b/pfam_gap_rates/HflK_N.gap.json
@@ -0,0 +1 @@
+{"family": "HflK_N", "n_seqs": 344, "length": 84, "gap_rates": [0.19767441860465115, 0.1686046511627907, 0.16279069767441862, 0.13662790697674418, 0.125, 0.9302325581395349, 0.936046511627907, 0.9447674418604651, 0.9476744186046512, 0.938953488372093, 0.936046511627907, 0.9273255813953488, 0.11337209302325581, 0.11337209302325581, 0.32848837209302323, 0.29651162790697677, 0.45058139534883723, 0.7238372093023255, 0.9156976744186046, 0.9418604651162791, 0.8662790697674418, 0.6540697674418605, 0.36046511627906974, 0.27325581395348836, 0.2703488372093023, 0.06395348837209303, 0.061046511627906974, 0.7151162790697675, 0.7296511627906976, 0.7819767441860465, 0.8052325581395349, 0.875, 0.9011627906976745, 0.9244186046511628, 0.938953488372093, 0.9447674418604651, 0.938953488372093, 0.9302325581395349, 0.9127906976744186, 0.8837209302325582, 0.8691860465116279, 0.7906976744186046, 0.747093023255814, 0.7151162790697675, 0.7151162790697675, 0.4069767441860465, 0.46511627906976744, 0.9040697674418605, 0.8052325581395349, 0.5406976744186046, 0.563953488372093, 0.4127906976744186, 0.8343023255813954, 0.9331395348837209, 0.6424418604651163, 0.1744186046511628, 0.10755813953488372, 0.029069767441860465, 0.011627906976744186, 0.0029069767441860465, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00872093023255814, 0.005813953488372093, 0.00872093023255814, 0.011627906976744186, 0.014534883720930232, 0.020348837209302327, 0.07267441860465117, 0.05232558139534884, 0.05813953488372093, 0.10174418604651163, 0.25872093023255816], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HicB_lk_antitox.gap.json b/pfam_gap_rates/HicB_lk_antitox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04ddc58443551dffd7c012d066e973ed6389b0db
--- /dev/null
+++ b/pfam_gap_rates/HicB_lk_antitox.gap.json
@@ -0,0 +1 @@
+{"family": "HicB_lk_antitox", "n_seqs": 1244, "length": 125, "gap_rates": [0.3512861736334405, 0.29019292604501606, 0.1864951768488746, 0.15192926045016078, 0.12861736334405144, 0.1197749196141479, 0.09485530546623794, 0.8360128617363344, 0.0819935691318328, 0.05787781350482315, 0.05546623794212219, 0.9429260450160771, 0.11012861736334405, 0.027331189710610933, 0.02009646302250804, 0.024115755627009645, 0.01929260450160772, 0.01527331189710611, 0.01527331189710611, 0.01527331189710611, 0.014469453376205787, 0.014469453376205787, 0.023311897106109324, 0.03054662379421222, 0.012057877813504822, 0.01527331189710611, 0.00964630225080386, 0.00964630225080386, 0.008842443729903537, 0.008842443729903537, 0.008038585209003215, 0.008038585209003215, 0.007234726688102894, 0.008038585209003215, 0.007234726688102894, 0.007234726688102894, 0.007234726688102894, 0.007234726688102894, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.008038585209003215, 0.008842443729903537, 0.008842443729903537, 0.012861736334405145, 0.01607717041800643, 0.01929260450160772, 0.022508038585209004, 0.03617363344051447, 0.14790996784565916, 0.1535369774919614, 0.13263665594855306, 0.13585209003215434, 0.14790996784565916, 0.1487138263665595, 0.17041800643086816, 0.1832797427652733, 0.1937299035369775, 0.21221864951768488, 0.25562700964630225, 0.3102893890675241, 0.3954983922829582, 0.44935691318327975, 0.4807073954983923, 0.5305466237942122, 0.572347266881029, 0.6117363344051447, 0.655144694533762, 0.684887459807074, 0.7009646302250804, 0.7146302250803859, 0.7202572347266881, 0.7202572347266881, 0.707395498392283, 0.704983922829582, 0.7001607717041801, 0.7057877813504824, 0.704983922829582, 0.702572347266881, 0.702572347266881, 0.7081993569131833, 0.7090032154340836, 0.7098070739549839, 0.7202572347266881, 0.7210610932475884, 0.7282958199356914, 0.7242765273311897, 0.7218649517684887, 0.7258842443729904, 0.7266881028938906, 0.729903536977492, 0.7363344051446945, 0.7427652733118971, 0.747588424437299, 0.7483922829581994, 0.7483922829581994, 0.7483922829581994, 0.7491961414790996, 0.7491961414790996, 0.7508038585209004, 0.7588424437299035, 0.770096463022508, 0.8207395498392283, 0.8368167202572347, 0.8464630225080386, 0.8520900321543409, 0.8545016077170418, 0.8577170418006431, 0.8641479099678456, 0.8665594855305466, 0.8681672025723473, 0.8721864951768489, 0.8721864951768489, 0.8729903536977492, 0.8737942122186495, 0.8705787781350482, 0.8705787781350482, 0.8705787781350482, 0.8713826366559485, 0.8729903536977492, 0.8729903536977492, 0.8794212218649518, 0.885048231511254, 0.8971061093247589, 0.9155948553054662], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/His_Phos_1.gap.json b/pfam_gap_rates/His_Phos_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..065b969ced0f8763862cffa91c4e88b49a96ef7c
--- /dev/null
+++ b/pfam_gap_rates/His_Phos_1.gap.json
@@ -0,0 +1 @@
+{"family": "His_Phos_1", "n_seqs": 5000, "length": 225, "gap_rates": [0.3368, 0.2526, 0.224, 0.2116, 0.2098, 0.2076, 0.2062, 0.2058, 0.2064, 0.2064, 0.2038, 0.9484, 0.2184, 0.2364, 0.231, 0.3544, 0.3544, 0.8938, 0.3162, 0.2708, 0.2334, 0.2266, 0.2014, 0.1634, 0.1618, 0.151, 0.9414, 0.149, 0.1482, 0.1474, 0.1478, 0.1484, 0.1478, 0.1462, 0.145, 0.1432, 0.1426, 0.1418, 0.1452, 0.145, 0.1436, 0.1422, 0.141, 0.142, 0.1406, 0.717, 0.9432, 0.9222, 0.658, 0.1602, 0.1592, 0.1486, 0.1478, 0.1416, 0.1232, 0.8064, 0.9288, 0.945, 0.9052, 0.7902, 0.122, 0.1214, 0.1214, 0.1212, 0.121, 0.1206, 0.12, 0.1196, 0.1194, 0.1192, 0.1194, 0.1194, 0.1204, 0.1208, 0.1246, 0.13, 0.17, 0.2598, 0.2412, 0.2132, 0.6806, 0.897, 0.9488, 0.9392, 0.7468, 0.6166, 0.1734, 0.1706, 0.1742, 0.1806, 0.187, 0.1952, 0.2016, 0.2084, 0.2118, 0.2254, 0.2282, 0.2738, 0.262, 0.263, 0.2672, 0.2714, 0.2692, 0.2684, 0.2728, 0.2706, 0.3332, 0.3078, 0.2982, 0.2874, 0.2812, 0.2748, 0.2714, 0.2684, 0.3748, 0.3572, 0.3148, 0.2896, 0.275, 0.2712, 0.2684, 0.2614, 0.2574, 0.2554, 0.2522, 0.259, 0.265, 0.386, 0.3226, 0.298, 0.2802, 0.268, 0.2444, 0.8576, 0.9224, 0.9446, 0.9332, 0.9052, 0.807, 0.2434, 0.2454, 0.2508, 0.2586, 0.263, 0.2644, 0.2656, 0.2678, 0.2686, 0.2692, 0.27, 0.2704, 0.2718, 0.2714, 0.2724, 0.2728, 0.9446, 0.9044, 0.2738, 0.2794, 0.2804, 0.2818, 0.2842, 0.289, 0.2948, 0.3346, 0.4042, 0.4448, 0.8664, 0.9326, 0.9018, 0.7696, 0.2874, 0.2804, 0.2806, 0.2806, 0.2808, 0.2812, 0.2816, 0.283, 0.2832, 0.2838, 0.2846, 0.2854, 0.2862, 0.2898, 0.2936, 0.2998, 0.3144, 0.3196, 0.9476, 0.3424, 0.3492, 0.35, 0.3514, 0.3596, 0.3746, 0.395, 0.406, 0.401, 0.4044, 0.4052, 0.3976, 0.88, 0.4038, 0.4132, 0.4252, 0.4386, 0.4452, 0.452, 0.4584, 0.463, 0.475, 0.4918, 0.5076, 0.5286, 0.559, 0.594, 0.635, 0.662, 0.6914, 0.7182, 0.7492, 0.7814, 0.8218, 0.8912], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hist_deacetyl.gap.json b/pfam_gap_rates/Hist_deacetyl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2fa2c32c3bffc8b5111ba72d8c60a4cdaee5510
--- /dev/null
+++ b/pfam_gap_rates/Hist_deacetyl.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HlyIII.gap.json b/pfam_gap_rates/HlyIII.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..745797006de53ebf28183a338ff9f681c84e9644
--- /dev/null
+++ b/pfam_gap_rates/HlyIII.gap.json
@@ -0,0 +1 @@
+{"family": "HlyIII", "n_seqs": 2423, "length": 275, "gap_rates": [0.7007841518778374, 0.5596368138671068, 0.42302930251754023, 0.35204292199752374, 0.2443252166735452, 0.1972761040033017, 0.17333883615352869, 0.14733801073049937, 0.12587701196863393, 0.1081304168386298, 0.10152703260420966, 0.09946347503095336, 0.09822534048699959, 0.09739991745769706, 0.09616178291374329, 0.09657449442839455, 0.09616178291374329, 0.09451093685513826, 0.09781262897234833, 0.09698720594304581, 0.21708625670656212, 0.19562525794469665, 0.10565414775072225, 0.09781262897234833, 0.09657449442839455, 0.09533635988444078, 0.09368551382583575, 0.09368551382583575, 0.09244737928188196, 0.09079653322327692, 0.09368551382583575, 0.10359059017746595, 0.11968633924886504, 0.11432108955839868, 0.11968633924886504, 0.5728435823359471, 0.8910441601320677, 0.7796120511762278, 0.2959141560049525, 0.2430870821295914, 0.21914981427981842, 0.11803549319026001, 0.921997523730912, 0.921997523730912, 0.9224102352455633, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Homeobox.gap.json b/pfam_gap_rates/Homeobox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d8cffd3a3f6c9276228c2c10cb74ff5c276b600
--- /dev/null
+++ b/pfam_gap_rates/Homeobox.gap.json
@@ -0,0 +1 @@
+{"family": "Homeobox", "n_seqs": 5000, "length": 62, "gap_rates": [0.3708, 0.2496, 0.173, 0.1438, 0.1234, 0.096, 0.08, 0.0656, 0.0604, 0.0546, 0.0474, 0.0434, 0.034, 0.027, 0.0224, 0.0218, 0.02, 0.018, 0.0176, 0.0166, 0.0148, 0.947, 0.014, 0.013, 0.0122, 0.0114, 0.0116, 0.0112, 0.0116, 0.0116, 0.0106, 0.0112, 0.0108, 0.0102, 0.01, 0.01, 0.0088, 0.0082, 0.9382, 0.939, 0.9386, 0.933, 0.0084, 0.008, 0.008, 0.0082, 0.0082, 0.0092, 0.0188, 0.025, 0.041, 0.0594, 0.0628, 0.0632, 0.0676, 0.0692, 0.0746, 0.0912, 0.1054, 0.1332, 0.1486, 0.3188], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HopJ.gap.json b/pfam_gap_rates/HopJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4dac32cd4c97f9e98b9c45f355d9eecb29b342a1
--- /dev/null
+++ b/pfam_gap_rates/HopJ.gap.json
@@ -0,0 +1 @@
+{"family": "HopJ", "n_seqs": 106, "length": 113, "gap_rates": [0.9245283018867925, 0.4056603773584906, 0.1792452830188679, 0.14150943396226415, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.10377358490566038, 0.10377358490566038, 0.09433962264150944, 0.4056603773584906, 0.330188679245283, 0.08490566037735849, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.8584905660377359, 0.8773584905660378, 0.8584905660377359, 0.839622641509434, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.0, 0.0, 0.009433962264150943, 0.009433962264150943, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.42452830188679247, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.0660377358490566, 0.08490566037735849, 0.1320754716981132, 0.1320754716981132, 0.1792452830188679], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Host_attach.gap.json b/pfam_gap_rates/Host_attach.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1422922d48454a39d8139d8afae2713604bb8ca
--- /dev/null
+++ b/pfam_gap_rates/Host_attach.gap.json
@@ -0,0 +1 @@
+{"family": "Host_attach", "n_seqs": 291, "length": 152, "gap_rates": [0.2920962199312715, 0.15463917525773196, 0.10652920962199312, 0.10652920962199312, 0.10309278350515463, 0.10309278350515463, 0.10309278350515463, 0.10309278350515463, 0.10309278350515463, 0.09965635738831616, 0.09965635738831616, 0.09965635738831616, 0.09965635738831616, 0.09965635738831616, 0.8934707903780069, 0.9072164948453608, 0.9243986254295533, 0.9243986254295533, 0.9003436426116839, 0.8831615120274914, 0.09965635738831616, 0.10652920962199312, 0.09621993127147767, 0.12027491408934708, 0.12714776632302405, 0.18556701030927836, 0.13745704467353953, 0.11683848797250859, 0.12027491408934708, 0.12027491408934708, 0.9381443298969072, 0.7319587628865979, 0.17869415807560138, 0.15463917525773196, 0.17525773195876287, 0.15807560137457044, 0.15120274914089346, 0.13402061855670103, 0.14776632302405499, 0.3539518900343643, 0.1718213058419244, 0.13058419243986255, 0.12027491408934708, 0.10309278350515463, 0.09621993127147767, 0.09621993127147767, 0.09278350515463918, 0.08934707903780069, 0.07216494845360824, 0.058419243986254296, 0.058419243986254296, 0.054982817869415807, 0.058419243986254296, 0.06529209621993128, 0.06529209621993128, 0.07216494845360824, 0.0859106529209622, 0.10309278350515463, 0.36082474226804123, 0.2646048109965636, 0.22336769759450173, 0.5773195876288659, 0.21993127147766323, 0.21305841924398625, 0.140893470790378, 0.12371134020618557, 0.1134020618556701, 0.09965635738831616, 0.9312714776632303, 0.9484536082474226, 0.9484536082474226, 0.9278350515463918, 0.422680412371134, 0.048109965635738834, 0.037800687285223365, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.01718213058419244, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.8831615120274914, 0.013745704467353952, 0.013745704467353952, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.006872852233676976, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.006872852233676976, 0.027491408934707903, 0.030927835051546393, 0.01718213058419244, 0.020618556701030927, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.003436426116838488, 0.013745704467353952, 0.010309278350515464, 0.9347079037800687, 0.01718213058419244, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.010309278350515464, 0.006872852233676976, 0.010309278350515464, 0.027491408934707903, 0.037800687285223365, 0.037800687285223365, 0.03436426116838488, 0.037800687285223365, 0.03436426116838488, 0.041237113402061855, 0.044673539518900345, 0.048109965635738834, 0.054982817869415807, 0.061855670103092786, 0.06872852233676977, 0.09278350515463918, 0.140893470790378, 0.21993127147766323, 0.5257731958762887], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hpr_kinase_N.gap.json b/pfam_gap_rates/Hpr_kinase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad3c05c9170782880cadd97cfb78cedf55d278b3
--- /dev/null
+++ b/pfam_gap_rates/Hpr_kinase_N.gap.json
@@ -0,0 +1 @@
+{"family": "Hpr_kinase_N", "n_seqs": 764, "length": 131, "gap_rates": [0.3887434554973822, 0.21596858638743455, 0.14267015706806283, 0.12041884816753927, 0.10863874345549739, 0.08638743455497382, 0.08115183246073299, 0.07329842931937172, 0.058900523560209424, 0.0549738219895288, 0.7735602094240838, 0.9410994764397905, 0.9345549738219895, 0.7604712041884817, 0.051047120418848166, 0.04450261780104712, 0.04057591623036649, 0.03926701570680628, 0.03795811518324607, 0.03926701570680628, 0.8259162303664922, 0.7931937172774869, 0.07460732984293193, 0.07198952879581152, 0.041884816753926704, 0.03926701570680628, 0.03795811518324607, 0.051047120418848166, 0.0549738219895288, 0.049738219895287955, 0.5, 0.051047120418848166, 0.04057591623036649, 0.028795811518324606, 0.02617801047120419, 0.028795811518324606, 0.031413612565445025, 0.02617801047120419, 0.031413612565445025, 0.030104712041884817, 0.02617801047120419, 0.028795811518324606, 0.01963350785340314, 0.014397905759162303, 0.014397905759162303, 0.014397905759162303, 0.014397905759162303, 0.014397905759162303, 0.014397905759162303, 0.014397905759162303, 0.014397905759162303, 0.015706806282722512, 0.014397905759162303, 0.015706806282722512, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.014397905759162303, 0.013089005235602094, 0.014397905759162303, 0.014397905759162303, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.014397905759162303, 0.014397905759162303, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.011780104712041885, 0.010471204188481676, 0.011780104712041885, 0.007853403141361256, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.011780104712041885, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.006544502617801047, 0.006544502617801047, 0.006544502617801047, 0.006544502617801047, 0.006544502617801047, 0.006544502617801047, 0.006544502617801047, 0.006544502617801047, 0.009162303664921465, 0.009162303664921465, 0.009162303664921465, 0.009162303664921465, 0.009162303664921465, 0.014397905759162303, 0.015706806282722512, 0.01963350785340314, 0.031413612565445025, 0.04581151832460733, 0.07198952879581152, 0.1387434554973822], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IDH.gap.json b/pfam_gap_rates/IDH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf28a318a787cb4d0c27af4dd64467b0697dfc59
--- /dev/null
+++ b/pfam_gap_rates/IDH.gap.json
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diff --git a/pfam_gap_rates/IFRD.gap.json b/pfam_gap_rates/IFRD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f6dbca52b17b64adf6f6f4d76c7c16d8190423b
--- /dev/null
+++ b/pfam_gap_rates/IFRD.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/IFRD_C.gap.json b/pfam_gap_rates/IFRD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de5ffa6fb22344d851473192b0c7af15cd501938
--- /dev/null
+++ b/pfam_gap_rates/IFRD_C.gap.json
@@ -0,0 +1 @@
+{"family": "IFRD_C", "n_seqs": 129, "length": 57, "gap_rates": [0.10077519379844961, 0.06201550387596899, 0.06201550387596899, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.6434108527131783, 0.5891472868217055, 0.4263565891472868, 0.3023255813953488, 0.21705426356589147, 0.10077519379844961, 0.046511627906976744, 0.046511627906976744, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.7906976744186046, 0.7906976744186046, 0.7829457364341085, 0.03875968992248062, 0.023255813953488372, 0.023255813953488372, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.023255813953488372, 0.07751937984496124, 0.09302325581395349, 0.15503875968992248, 0.4108527131782946], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IL6Ra-bind.gap.json b/pfam_gap_rates/IL6Ra-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62cdd1294ae29c262cc8d3cd9e1c1165c2603844
--- /dev/null
+++ b/pfam_gap_rates/IL6Ra-bind.gap.json
@@ -0,0 +1 @@
+{"family": "IL6Ra-bind", "n_seqs": 106, "length": 111, "gap_rates": [0.20754716981132076, 0.05660377358490566, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.8773584905660378, 0.8867924528301887, 0.8773584905660378, 0.7830188679245284, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.08490566037735849, 0.11320754716981132, 0.009433962264150943, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.04716981132075472, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.0, 0.0, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.2169811320754717, 0.1792452830188679, 0.02830188679245283, 0.02830188679245283, 0.8207547169811321, 0.9056603773584906, 0.9433962264150944, 0.8962264150943396, 0.7924528301886793, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.03773584905660377, 0.09433962264150944, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.6226415094339622, 0.19811320754716982, 0.16037735849056603, 0.8867924528301887, 0.9056603773584906, 0.8867924528301887, 0.8867924528301887, 0.07547169811320754, 0.08490566037735849, 0.05660377358490566, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.36792452830188677, 0.6509433962264151, 0.27358490566037735, 0.19811320754716982, 0.12264150943396226, 0.08490566037735849, 0.9245283018867925, 0.03773584905660377, 0.04716981132075472, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.22641509433962265, 0.24528301886792453, 0.09433962264150944, 0.10377358490566038, 0.11320754716981132, 0.1320754716981132, 0.1509433962264151, 0.1509433962264151, 0.16981132075471697, 0.19811320754716982, 0.2169811320754717, 0.24528301886792453, 0.29245283018867924, 0.32075471698113206, 0.3490566037735849, 0.36792452830188677, 0.39622641509433965, 0.42452830188679247, 0.46226415094339623, 0.5660377358490566, 0.8207547169811321], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IMS_HHH.gap.json b/pfam_gap_rates/IMS_HHH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e68e5e56102bf770a9e7ef148805371236c7836f
--- /dev/null
+++ b/pfam_gap_rates/IMS_HHH.gap.json
@@ -0,0 +1 @@
+{"family": "IMS_HHH", "n_seqs": 1200, "length": 33, "gap_rates": [0.5816666666666667, 0.3383333333333333, 0.1675, 0.08666666666666667, 0.035, 0.0125, 0.006666666666666667, 0.004166666666666667, 0.0016666666666666668, 0.0008333333333333334, 0.0, 0.8791666666666667, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0025, 0.005833333333333334, 0.013333333333333334, 0.020833333333333332, 0.03833333333333333, 0.056666666666666664, 0.12166666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ITI_HC_C.gap.json b/pfam_gap_rates/ITI_HC_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e78f0ce945599e966448b0419c72c6d55af0555f
--- /dev/null
+++ b/pfam_gap_rates/ITI_HC_C.gap.json
@@ -0,0 +1 @@
+{"family": "ITI_HC_C", "n_seqs": 115, "length": 207, "gap_rates": [0.8695652173913043, 0.3130434782608696, 0.25217391304347825, 0.23478260869565218, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.20869565217391303, 0.21739130434782608, 0.5130434782608696, 0.3565217391304348, 0.19130434782608696, 0.19130434782608696, 0.17391304347826086, 0.1565217391304348, 0.1565217391304348, 0.14782608695652175, 0.1391304347826087, 0.1391304347826087, 0.13043478260869565, 0.10434782608695652, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.9391304347826087, 0.7304347826086957, 0.1826086956521739, 0.17391304347826086, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.10434782608695652, 0.45217391304347826, 0.9478260869565217, 0.16521739130434782, 0.10434782608695652, 0.10434782608695652, 0.09565217391304348, 0.11304347826086956, 0.11304347826086956, 0.10434782608695652, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.08695652173913043, 0.10434782608695652, 0.11304347826086956, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.13043478260869565, 0.12173913043478261, 0.1391304347826087, 0.12173913043478261, 0.9478260869565217, 0.9478260869565217, 0.1565217391304348, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.1391304347826087, 0.13043478260869565, 0.20869565217391303, 0.17391304347826086, 0.16521739130434782, 0.16521739130434782, 0.14782608695652175, 0.19130434782608696, 0.17391304347826086, 0.1826086956521739, 0.9478260869565217, 0.17391304347826086, 0.14782608695652175, 0.1565217391304348, 0.14782608695652175, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.11304347826086956, 0.12173913043478261, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.11304347826086956, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.4782608695652174, 0.1565217391304348, 0.1565217391304348, 0.1391304347826087, 0.11304347826086956, 0.11304347826086956, 0.14782608695652175, 0.16521739130434782, 0.1826086956521739, 0.22608695652173913, 0.3130434782608696, 0.7913043478260869, 0.8173913043478261, 0.8173913043478261, 0.8260869565217391, 0.8260869565217391, 0.9304347826086956, 0.8695652173913043, 0.8260869565217391, 0.8173913043478261, 0.8173913043478261, 0.8, 0.7913043478260869, 0.28695652173913044, 0.24347826086956523, 0.22608695652173913, 0.20869565217391303, 0.20869565217391303, 0.1826086956521739, 0.1565217391304348, 0.1565217391304348, 0.1565217391304348, 0.14782608695652175, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.16521739130434782, 0.2, 0.2, 0.1826086956521739, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.5565217391304348, 0.4260869565217391, 0.4260869565217391, 0.41739130434782606, 0.2, 0.2, 0.1826086956521739, 0.1826086956521739, 0.1826086956521739, 0.1826086956521739, 0.1826086956521739, 0.20869565217391303, 0.30434782608695654, 0.48695652173913045], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Inhibitor_I9.gap.json b/pfam_gap_rates/Inhibitor_I9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0a2b24ab9053cfcc1cde0a31091fbc4dda4f60e
--- /dev/null
+++ b/pfam_gap_rates/Inhibitor_I9.gap.json
@@ -0,0 +1 @@
+{"family": "Inhibitor_I9", "n_seqs": 2587, "length": 119, "gap_rates": [0.47081561654425974, 0.23115577889447236, 0.20487050637804408, 0.20216466950135292, 0.20216466950135292, 0.19984538074990335, 0.198299188248937, 0.2033243138770777, 0.3332044839582528, 0.8639350599149594, 0.8790104367993815, 0.8909934286818709, 0.9002705836876691, 0.9064553536915346, 0.9110939311944337, 0.9141863161963665, 0.9250096637031311, 0.9319675299574797, 0.947816003092385, 0.9404715887127948, 0.9284885968303054, 0.9157325086973328, 0.9118670274449169, 0.908001546192501, 0.9018167761886355, 0.8979512949362196, 0.8848086586780054, 0.8678005411673754, 0.8608426749130267, 0.29764205643602626, 0.26246617703904135, 0.24352531890220333, 0.24197912640123695, 0.22806339389253963, 0.8987243911867028, 0.9300347893312717, 0.8658678005411674, 0.5736374178585234, 0.20371086200231928, 0.17626594511016622, 0.15345960572091225, 0.1349052957093158, 0.12756088132972554, 0.12098956320061847, 0.12098956320061847, 0.11789717819868574, 0.12214920757634326, 0.2489369926555856, 0.24352531890220333, 0.24313877077696172, 0.2342481638964051, 0.17549284885968303, 0.8395825280247391, 0.8793969849246231, 0.9126401236954, 0.9377657518361036, 0.9304213374565133, 0.8948589099342869, 0.8554310011596443, 0.8245071511403169, 0.2346347120216467, 0.32586006957866254, 0.3293390027058369, 0.3448009277155006, 0.27831465017394663, 0.8314650173946656, 0.9246231155778895, 0.8790104367993815, 0.74758407421724, 0.41012756088132973, 0.2717433320448396, 0.19172787011982992, 0.04870506378044066, 0.03672207189795129, 0.027831465017394665, 0.020873598763045998, 0.015848473134905297, 0.012756088132972555, 0.011209895632006184, 0.008117510630073444, 0.008117510630073444, 0.07460378817162737, 0.9424043293390028, 0.8589099342868187, 0.007730962504831852, 0.0011596443757247777, 0.0007730962504831851, 0.0, 0.0, 0.0, 0.0, 0.00038654812524159255, 0.00038654812524159255, 0.0007730962504831851, 0.0007730962504831851, 0.0011596443757247777, 0.0011596443757247777, 0.0023192887514495554, 0.004252029377657518, 0.004252029377657518, 0.005025125628140704, 0.007730962504831852, 0.014302280633938926, 0.015461925009663703, 0.01778121376111326, 0.019713954387321223, 0.02280633938925396, 0.028218013142636257, 0.029377657518361036, 0.03015075376884422, 0.03362968689601856, 0.03672207189795129, 0.04638577502899111, 0.06146115191341322, 0.10475454194047158, 0.16776188635485118, 0.23154232701971394, 0.38770776961731734, 0.6795516041747197], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Integrase_AP2.gap.json b/pfam_gap_rates/Integrase_AP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87e9d038fa760a57af8f9dc9db162731ef5e445a
--- /dev/null
+++ b/pfam_gap_rates/Integrase_AP2.gap.json
@@ -0,0 +1 @@
+{"family": "Integrase_AP2", "n_seqs": 456, "length": 46, "gap_rates": [0.3991228070175439, 0.1162280701754386, 0.10307017543859649, 0.07894736842105263, 0.07456140350877193, 0.07017543859649122, 0.4298245614035088, 0.6425438596491229, 0.2565789473684211, 0.07675438596491228, 0.05701754385964912, 0.125, 0.17763157894736842, 0.03289473684210526, 0.03070175438596491, 0.03728070175438596, 0.03070175438596491, 0.017543859649122806, 0.0, 0.015350877192982455, 0.013157894736842105, 0.0043859649122807015, 0.0021929824561403508, 0.05482456140350877, 0.008771929824561403, 0.0043859649122807015, 0.0021929824561403508, 0.0021929824561403508, 0.0021929824561403508, 0.0021929824561403508, 0.0043859649122807015, 0.006578947368421052, 0.015350877192982455, 0.02850877192982456, 0.05701754385964912, 0.06359649122807018, 0.08114035087719298, 0.13596491228070176, 0.1600877192982456, 0.19298245614035087, 0.21929824561403508, 0.2565789473684211, 0.32456140350877194, 0.43640350877192985, 0.5175438596491229, 0.7324561403508771], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Intron_maturas2.gap.json b/pfam_gap_rates/Intron_maturas2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37a11ad50eb68748e68c2907fe538205c4993144
--- /dev/null
+++ b/pfam_gap_rates/Intron_maturas2.gap.json
@@ -0,0 +1 @@
+{"family": "Intron_maturas2", "n_seqs": 269, "length": 150, "gap_rates": [0.8401486988847584, 0.7100371747211895, 0.6096654275092936, 0.44609665427509293, 0.31226765799256506, 0.3048327137546468, 0.29739776951672864, 0.2936802973977695, 0.2899628252788104, 0.27137546468401486, 0.25650557620817843, 0.2527881040892193, 0.24535315985130113, 0.241635687732342, 0.23048327137546468, 0.22304832713754646, 0.22304832713754646, 0.20817843866171004, 0.20817843866171004, 0.20817843866171004, 0.17843866171003717, 0.16728624535315986, 0.17843866171003717, 0.1821561338289963, 0.3940520446096654, 0.7769516728624535, 0.8438661710037175, 0.8661710037174721, 0.9219330855018587, 0.8661710037174721, 0.8141263940520446, 0.5278810408921933, 0.40892193308550184, 0.11524163568773234, 0.10780669144981413, 0.10408921933085502, 0.10037174721189591, 0.09293680297397769, 0.08550185873605948, 0.08921933085501858, 0.08550185873605948, 0.08178438661710037, 0.07806691449814127, 0.07806691449814127, 0.07806691449814127, 0.07806691449814127, 0.07806691449814127, 0.08178438661710037, 0.07806691449814127, 0.07806691449814127, 0.07806691449814127, 0.07063197026022305, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.03345724907063197, 0.02973977695167286, 0.026022304832713755, 0.026022304832713755, 0.03717472118959108, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.02973977695167286, 0.02973977695167286, 0.026022304832713755, 0.03345724907063197, 0.02973977695167286, 0.03345724907063197, 0.02973977695167286, 0.026022304832713755, 0.026022304832713755, 0.03345724907063197, 0.026022304832713755, 0.026022304832713755, 0.4646840148698885, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.09293680297397769, 0.09293680297397769, 0.09665427509293681, 0.09665427509293681, 0.09665427509293681, 0.09665427509293681, 0.10037174721189591, 0.10037174721189591, 0.10037174721189591, 0.10037174721189591, 0.10037174721189591, 0.10408921933085502, 0.10408921933085502, 0.10408921933085502, 0.10780669144981413, 0.11152416356877323, 0.7881040892193308, 0.16728624535315986, 0.17100371747211895, 0.16728624535315986, 0.17843866171003717, 0.17843866171003717, 0.1821561338289963, 0.22304832713754646, 0.2379182156133829, 0.3048327137546468, 0.39776951672862454, 0.8810408921933085, 0.9107806691449815, 0.9405204460966543, 0.9442379182156134, 0.9479553903345725, 0.9442379182156134, 0.9107806691449815, 0.9070631970260223, 0.8736059479553904, 0.7881040892193308, 0.7955390334572491, 0.7843866171003717, 0.6394052044609665, 0.6691449814126395, 0.6728624535315985, 0.6988847583643123, 0.8327137546468402, 0.7174721189591078, 0.7286245353159851, 0.7509293680297398, 0.758364312267658, 0.7695167286245354, 0.7769516728624535, 0.7769516728624535, 0.7843866171003717, 0.7955390334572491, 0.8066914498141264, 0.9368029739776952, 0.9330855018587361, 0.9330855018587361, 0.9368029739776952, 0.8698884758364313, 0.8810408921933085, 0.8810408921933085, 0.8921933085501859, 0.895910780669145, 0.8921933085501859, 0.895910780669145, 0.9033457249070632, 0.9070631970260223, 0.9144981412639405, 0.9144981412639405, 0.9219330855018587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Invasin_D3.gap.json b/pfam_gap_rates/Invasin_D3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b97a044aaaf89d7da4b82c5a161f964c6031458
--- /dev/null
+++ b/pfam_gap_rates/Invasin_D3.gap.json
@@ -0,0 +1 @@
+{"family": "Invasin_D3", "n_seqs": 137, "length": 108, "gap_rates": [0.8467153284671532, 0.5328467153284672, 0.24087591240875914, 0.17518248175182483, 0.15328467153284672, 0.12408759124087591, 0.0948905109489051, 0.08029197080291971, 0.06569343065693431, 0.051094890510948905, 0.043795620437956206, 0.0364963503649635, 0.0364963503649635, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.0364963503649635, 0.058394160583941604, 0.043795620437956206, 0.029197080291970802, 0.021897810218978103, 0.021897810218978103, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.014598540145985401, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0, 0.0072992700729927005, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0072992700729927005, 0.8540145985401459, 0.948905109489051, 0.9124087591240876, 0.8175182481751825, 0.656934306569343, 0.029197080291970802, 0.014598540145985401, 0.014598540145985401, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.014598540145985401, 0.9124087591240876, 0.8832116788321168, 0.058394160583941604, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.6496350364963503, 0.0072992700729927005, 0.0072992700729927005, 0.8467153284671532, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.014598540145985401, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.014598540145985401, 0.029197080291970802, 0.051094890510948905, 0.058394160583941604, 0.072992700729927, 0.0948905109489051, 0.15328467153284672, 0.43795620437956206, 0.291970802919708, 0.30656934306569344, 0.43795620437956206, 0.48175182481751827, 0.49635036496350365, 0.5547445255474452, 0.6204379562043796, 0.6496350364963503, 0.6934306569343066, 0.7518248175182481, 0.948905109489051], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IspA.gap.json b/pfam_gap_rates/IspA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..249611831ae1988ba66176c5f1fff744895d03ef
--- /dev/null
+++ b/pfam_gap_rates/IspA.gap.json
@@ -0,0 +1 @@
+{"family": "IspA", "n_seqs": 466, "length": 216, "gap_rates": [0.27467811158798283, 0.13948497854077252, 0.0944206008583691, 0.08369098712446352, 0.07725321888412018, 0.06437768240343347, 0.0536480686695279, 0.0536480686695279, 0.05150214592274678, 0.05150214592274678, 0.045064377682403435, 0.045064377682403435, 0.045064377682403435, 0.045064377682403435, 0.045064377682403435, 0.045064377682403435, 0.04721030042918455, 0.045064377682403435, 0.8218884120171673, 0.8283261802575107, 0.8304721030042919, 0.8476394849785408, 0.851931330472103, 0.8605150214592274, 0.8669527896995708, 0.8562231759656652, 0.851931330472103, 0.8433476394849786, 0.8283261802575107, 0.8283261802575107, 0.7746781115879828, 0.045064377682403435, 0.04721030042918455, 0.03862660944206009, 0.7725321888412017, 0.778969957081545, 0.778969957081545, 0.7854077253218884, 0.8004291845493562, 0.8090128755364807, 0.8261802575107297, 0.8948497854077253, 0.9012875536480687, 0.9034334763948498, 0.907725321888412, 0.9163090128755365, 0.9377682403433476, 0.9484978540772532, 0.9334763948497854, 0.9120171673819742, 0.9034334763948498, 0.9034334763948498, 0.8991416309012875, 0.8412017167381974, 0.8111587982832618, 0.8047210300429185, 0.7875536480686696, 0.7811158798283262, 0.778969957081545, 0.778969957081545, 0.7553648068669528, 0.03862660944206009, 0.03862660944206009, 0.034334763948497854, 0.032188841201716736, 0.032188841201716736, 0.030042918454935622, 0.027896995708154508, 0.027896995708154508, 0.02575107296137339, 0.02575107296137339, 0.023605150214592276, 0.023605150214592276, 0.023605150214592276, 0.023605150214592276, 0.023605150214592276, 0.023605150214592276, 0.023605150214592276, 0.023605150214592276, 0.023605150214592276, 0.023605150214592276, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.017167381974248927, 0.017167381974248927, 0.019313304721030045, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.015021459227467811, 0.015021459227467811, 0.015021459227467811, 0.017167381974248927, 0.019313304721030045, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.015021459227467811, 0.015021459227467811, 0.015021459227467811, 0.015021459227467811, 0.015021459227467811, 0.015021459227467811, 0.017167381974248927, 0.017167381974248927, 0.019313304721030045, 0.019313304721030045, 0.02145922746781116, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.5064377682403434, 0.023605150214592276, 0.02575107296137339, 0.023605150214592276, 0.023605150214592276, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.023605150214592276, 0.02575107296137339, 0.023605150214592276, 0.023605150214592276, 0.9291845493562232, 0.019313304721030045, 0.02145922746781116, 0.019313304721030045, 0.02145922746781116, 0.02145922746781116, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.02145922746781116, 0.03862660944206009, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.019313304721030045, 0.02145922746781116, 0.019313304721030045, 0.02145922746781116, 0.027896995708154508, 0.03862660944206009, 0.023605150214592276, 0.023605150214592276, 0.02575107296137339, 0.04721030042918455, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.027896995708154508, 0.027896995708154508, 0.027896995708154508, 0.032188841201716736, 0.03648068669527897, 0.04291845493562232, 0.045064377682403435, 0.04721030042918455, 0.04935622317596566, 0.0536480686695279, 0.06652360515021459, 0.07296137339055794, 0.07725321888412018, 0.12875536480686695, 0.2918454935622318, 0.47854077253218885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IstB_IS21.gap.json b/pfam_gap_rates/IstB_IS21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6fd954dec0d369ce3465b26edd4486df224fcebb
--- /dev/null
+++ b/pfam_gap_rates/IstB_IS21.gap.json
@@ -0,0 +1 @@
+{"family": "IstB_IS21", "n_seqs": 2480, "length": 187, "gap_rates": [0.9467741935483871, 0.7064516129032258, 0.632258064516129, 0.5907258064516129, 0.5451612903225806, 0.530241935483871, 0.5205645161290322, 0.5125, 0.5064516129032258, 0.5032258064516129, 0.5016129032258064, 0.49959677419354837, 0.4975806451612903, 0.4971774193548387, 0.9233870967741935, 0.49112903225806454, 0.4790322580645161, 0.47096774193548385, 0.4681451612903226, 0.46411290322580645, 0.4705645161290323, 0.4629032258064516, 0.45564516129032256, 0.45241935483870965, 0.4504032258064516, 0.4508064516129032, 0.4483870967741935, 0.4491935483870968, 0.5032258064516129, 0.4399193548387097, 0.4366935483870968, 0.4346774193548387, 0.43024193548387096, 0.42620967741935484, 0.42258064516129035, 0.4120967741935484, 0.41008064516129034, 0.4036290322580645, 0.4020161290322581, 0.9495967741935484, 0.38911290322580644, 0.37540322580645163, 0.3487903225806452, 0.3189516129032258, 0.30766129032258066, 0.29354838709677417, 0.2524193548387097, 0.20524193548387096, 0.16612903225806452, 0.1350806451612903, 0.12056451612903225, 0.10806451612903226, 0.10403225806451613, 0.10201612903225807, 0.10040322580645161, 0.10040322580645161, 0.1, 0.09838709677419355, 0.09838709677419355, 0.09798387096774193, 0.09758064516129032, 0.09919354838709678, 0.09919354838709678, 0.09959677419354838, 0.0967741935483871, 0.09798387096774193, 0.09798387096774193, 0.09798387096774193, 0.09475806451612903, 0.09596774193548387, 0.09475806451612903, 0.09435483870967742, 0.09435483870967742, 0.0935483870967742, 0.09233870967741936, 0.9125, 0.09274193548387097, 0.09112903225806451, 0.09193548387096774, 0.09193548387096774, 0.0907258064516129, 0.08709677419354839, 0.08709677419354839, 0.08669354838709678, 0.08870967741935484, 0.08951612903225807, 0.08709677419354839, 0.08830645161290322, 0.0875, 0.08911290322580645, 0.08629032258064516, 0.08669354838709678, 0.08709677419354839, 0.08790322580645162, 0.09233870967741936, 0.09637096774193549, 0.9415322580645161, 0.09556451612903226, 0.0939516129032258, 0.09153225806451613, 0.08991935483870968, 0.09798387096774193, 0.11330645161290323, 0.11451612903225807, 0.09435483870967742, 0.08669354838709678, 0.08346774193548387, 0.0846774193548387, 0.08306451612903226, 0.08225806451612903, 0.08024193548387097, 0.07862903225806452, 0.07701612903225806, 0.07620967741935483, 0.07338709677419354, 0.07137096774193548, 0.07137096774193548, 0.07056451612903226, 0.07016129032258064, 0.07056451612903226, 0.07016129032258064, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.0717741935483871, 0.07016129032258064, 0.06895161290322581, 0.06935483870967742, 0.07096774193548387, 0.06935483870967742, 0.06814516129032258, 0.06854838709677419, 0.06935483870967742, 0.06733870967741935, 0.06693548387096775, 0.06451612903225806, 0.06330645161290323, 0.06330645161290323, 0.062096774193548386, 0.06290322580645161, 0.06411290322580646, 0.9346774193548387, 0.06653225806451613, 0.8911290322580645, 0.06612903225806452, 0.9241935483870968, 0.06532258064516129, 0.9254032258064516, 0.07016129032258064, 0.9395161290322581, 0.07056451612903226, 0.06653225806451613, 0.06935483870967742, 0.06814516129032258, 0.06733870967741935, 0.06854838709677419, 0.07096774193548387, 0.07459677419354839, 0.08225806451612903, 0.08911290322580645, 0.09516129032258064, 0.11330645161290323, 0.13629032258064516, 0.16330645161290322, 0.19153225806451613, 0.22903225806451613, 0.2608870967741935, 0.2842741935483871, 0.35846774193548386, 0.3548387096774194, 0.3713709677419355, 0.3870967741935484, 0.41411290322580646, 0.41854838709677417, 0.4213709677419355, 0.4245967741935484, 0.42620967741935484, 0.4266129032258065, 0.4274193548387097, 0.4314516129032258, 0.4399193548387097, 0.4504032258064516, 0.4584677419354839, 0.4625, 0.5112903225806451, 0.5637096774193548, 0.8100806451612903], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Jun.gap.json b/pfam_gap_rates/Jun.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..353d1fc88133169b2a24caf6165a283bad2961e3
--- /dev/null
+++ b/pfam_gap_rates/Jun.gap.json
@@ -0,0 +1 @@
+{"family": "Jun", "n_seqs": 100, "length": 311, "gap_rates": [0.48, 0.48, 0.48, 0.47, 0.45, 0.45, 0.65, 0.46, 0.45, 0.46, 0.46, 0.45, 0.49, 0.52, 0.5, 0.47, 0.48, 0.48, 0.49, 0.93, 0.93, 0.94, 0.95, 0.95, 0.95, 0.95, 0.95, 0.93, 0.93, 0.93, 0.89, 0.64, 0.6, 0.53, 0.5, 0.5, 0.46, 0.5, 0.42, 0.38, 0.32, 0.32, 0.26, 0.26, 0.26, 0.91, 0.24, 0.24, 0.24, 0.25, 0.24, 0.24, 0.24, 0.23, 0.23, 0.24, 0.31, 0.78, 0.29, 0.26, 0.25, 0.9, 0.91, 0.93, 0.94, 0.93, 0.93, 0.9, 0.85, 0.21, 0.22, 0.24, 0.25, 0.28, 0.36, 0.32, 0.27, 0.82, 0.85, 0.87, 0.87, 0.92, 0.95, 0.95, 0.88, 0.87, 0.85, 0.83, 0.8, 0.27, 0.33, 0.28, 0.15, 0.14, 0.13, 0.13, 0.13, 0.13, 0.9, 0.13, 0.13, 0.13, 0.12, 0.12, 0.12, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.1, 0.5, 0.22, 0.17, 0.12, 0.28, 0.32, 0.25, 0.1, 0.09, 0.09, 0.08, 0.08, 0.1, 0.94, 0.95, 0.84, 0.14, 0.12, 0.08, 0.11, 0.09, 0.09, 0.93, 0.93, 0.93, 0.93, 0.93, 0.95, 0.95, 0.95, 0.93, 0.93, 0.93, 0.93, 0.92, 0.09, 0.94, 0.92, 0.07, 0.07, 0.07, 0.07, 0.07, 0.09, 0.08, 0.07, 0.07, 0.07, 0.07, 0.07, 0.08, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.11, 0.11, 0.11, 0.85, 0.42, 0.37, 0.36, 0.21, 0.2, 0.25, 0.26, 0.25, 0.24, 0.29, 0.29, 0.3, 0.34, 0.33, 0.42, 0.9, 0.94, 0.85, 0.56, 0.51, 0.43, 0.39, 0.36, 0.34, 0.34, 0.37, 0.37, 0.37, 0.41, 0.43, 0.45, 0.62, 0.81, 0.81, 0.92, 0.93, 0.94, 0.93, 0.81, 0.81, 0.8, 0.51, 0.49, 0.42, 0.42, 0.42, 0.42, 0.43, 0.43, 0.43, 0.42, 0.42, 0.43, 0.43, 0.43, 0.44, 0.43, 0.45, 0.72, 0.67, 0.6, 0.53, 0.51, 0.48, 0.49, 0.49, 0.52, 0.93, 0.95, 0.95, 0.95, 0.91, 0.67, 0.57, 0.54, 0.53, 0.52, 0.57, 0.53, 0.57, 0.55, 0.54, 0.55, 0.56, 0.55, 0.51, 0.52, 0.55, 0.56, 0.55, 0.9, 0.92, 0.95, 0.95, 0.92, 0.9, 0.86, 0.73, 0.67, 0.64, 0.58, 0.95, 0.54, 0.52, 0.49, 0.49, 0.95, 0.95, 0.77, 0.76, 0.73, 0.56, 0.54, 0.53, 0.52, 0.52, 0.52, 0.51, 0.51, 0.51, 0.51, 0.51, 0.51, 0.52, 0.52, 0.52, 0.56, 0.78, 0.78, 0.63, 0.62, 0.62, 0.62, 0.64], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KH_5.gap.json b/pfam_gap_rates/KH_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2d0cf036dfc20df821732873ec6cead396ea884
--- /dev/null
+++ b/pfam_gap_rates/KH_5.gap.json
@@ -0,0 +1 @@
+{"family": "KH_5", "n_seqs": 2189, "length": 69, "gap_rates": [0.07948835084513477, 0.02375513933302878, 0.01416171767930562, 0.009136592051164915, 0.00867976244860667, 0.00867976244860667, 0.007309273640931932, 0.007309273640931932, 0.007309273640931932, 0.007309273640931932, 0.006852444038373686, 0.006852444038373686, 0.007309273640931932, 0.028780264961169484, 0.02832343535861124, 0.0269529465509365, 0.0269529465509365, 0.026496116948378255, 0.006395614435815441, 0.006395614435815441, 0.006395614435815441, 0.006395614435815441, 0.006395614435815441, 0.005938784833257195, 0.005025125628140704, 0.005025125628140704, 0.0045682960255824575, 0.0045682960255824575, 0.004111466423024212, 0.004111466423024212, 0.003654636820465966, 0.003654636820465966, 0.0031978072179077205, 0.0013704888076747374, 0.0013704888076747374, 0.00045682960255824577, 0.00045682960255824577, 0.021014161717679305, 0.0, 0.0, 0.0, 0.00045682960255824577, 0.00045682960255824577, 0.00045682960255824577, 0.0009136592051164915, 0.0009136592051164915, 0.0013704888076747374, 0.0013704888076747374, 0.0013704888076747374, 0.0013704888076747374, 0.0013704888076747374, 0.0013704888076747374, 0.0013704888076747374, 0.0013704888076747374, 0.0013704888076747374, 0.0013704888076747374, 0.0031978072179077205, 0.003654636820465966, 0.004111466423024212, 0.00548195523069895, 0.006395614435815441, 0.006395614435815441, 0.006395614435815441, 0.013704888076747372, 0.01735952489721334, 0.025582457743261764, 0.05116491548652353, 0.2165372316126085, 0.7272727272727273], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KIX_2.gap.json b/pfam_gap_rates/KIX_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf73f7484e6a241398da533a8db81fccc581c062
--- /dev/null
+++ b/pfam_gap_rates/KIX_2.gap.json
@@ -0,0 +1 @@
+{"family": "KIX_2", "n_seqs": 218, "length": 82, "gap_rates": [0.463302752293578, 0.3211009174311927, 0.3119266055045872, 0.30275229357798167, 0.2889908256880734, 0.2889908256880734, 0.26146788990825687, 0.24770642201834864, 0.24311926605504589, 0.23394495412844038, 0.22477064220183487, 0.22018348623853212, 0.22018348623853212, 0.22018348623853212, 0.21559633027522937, 0.21100917431192662, 0.19724770642201836, 0.18807339449541285, 0.17889908256880735, 0.04128440366972477, 0.04128440366972477, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.7431192660550459, 0.04128440366972477, 0.2706422018348624, 0.22018348623853212, 0.22935779816513763, 0.16972477064220184, 0.05504587155963303, 0.9311926605504587, 0.03211009174311927, 0.01834862385321101, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.013761467889908258, 0.013761467889908258, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.01834862385321101, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.027522935779816515, 0.009174311926605505, 0.03211009174311927, 0.045871559633027525, 0.05045871559633028, 0.05504587155963303, 0.0779816513761468, 0.09174311926605505, 0.0963302752293578, 0.0963302752293578, 0.10091743119266056, 0.13302752293577982, 0.13302752293577982, 0.13302752293577982, 0.13761467889908258, 0.13761467889908258, 0.14220183486238533, 0.14678899082568808, 0.1559633027522936, 0.20642201834862386, 0.23394495412844038, 0.25688073394495414, 0.26605504587155965, 0.3211009174311927, 0.4541284403669725, 0.6284403669724771], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KR.gap.json b/pfam_gap_rates/KR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4fd7de1d016a963be71bff684f19ec43d76fc25b
--- /dev/null
+++ b/pfam_gap_rates/KR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/KTSC.gap.json b/pfam_gap_rates/KTSC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a273c65a630b2d225dc292f1a735680f4069fd86
--- /dev/null
+++ b/pfam_gap_rates/KTSC.gap.json
@@ -0,0 +1 @@
+{"family": "KTSC", "n_seqs": 213, "length": 58, "gap_rates": [0.6056338028169014, 0.27699530516431925, 0.2300469483568075, 0.19718309859154928, 0.13615023474178403, 0.11737089201877934, 0.14084507042253522, 0.10328638497652583, 0.03286384976525822, 0.014084507042253521, 0.014084507042253521, 0.056338028169014086, 0.046948356807511735, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.014084507042253521, 0.03286384976525822, 0.004694835680751174, 0.004694835680751174, 0.018779342723004695, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.009389671361502348, 0.014084507042253521, 0.014084507042253521, 0.028169014084507043, 0.04225352112676056, 0.046948356807511735, 0.051643192488262914, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.06572769953051644, 0.07042253521126761, 0.07511737089201878, 0.08450704225352113, 0.09859154929577464, 0.15492957746478872, 0.19718309859154928], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KdgT.gap.json b/pfam_gap_rates/KdgT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65be881fa7c2ae414a67295a8df4947a98a07371
--- /dev/null
+++ b/pfam_gap_rates/KdgT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Kelch_2.gap.json b/pfam_gap_rates/Kelch_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..189c35610f41e39b46f8c8d1fd1d5087cedc381c
--- /dev/null
+++ b/pfam_gap_rates/Kelch_2.gap.json
@@ -0,0 +1 @@
+{"family": "Kelch_2", "n_seqs": 571, "length": 57, "gap_rates": [0.4395796847635727, 0.17688266199649738, 0.1330998248686515, 0.08056042031523643, 0.03327495621716287, 0.028021015761821366, 0.02276707530647986, 0.017513134851138354, 0.012259194395796848, 0.010507880910683012, 0.005253940455341506, 0.0035026269702276708, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7355516637478109, 0.8266199649737302, 0.8966725043782837, 0.9439579684763573, 0.9387040280210157, 0.8581436077057794, 0.7933450087565674, 0.6077057793345009, 0.5096322241681261, 0.39929947460595444, 0.24168126094570927, 0.024518388791593695, 0.005253940455341506, 0.005253940455341506, 0.005253940455341506, 0.0070052539404553416, 0.010507880910683012, 0.0070052539404553416, 0.010507880910683012, 0.008756567425569177, 0.040280210157618214, 0.03152364273204904, 0.021015761821366025, 0.012259194395796848, 0.012259194395796848, 0.012259194395796848, 0.012259194395796848, 0.012259194395796848, 0.01576182136602452, 0.01926444833625219, 0.07180385288966724, 0.1190893169877408, 0.2381786339754816, 0.3204903677758319, 0.5814360770577933, 0.6777583187390543, 0.7828371278458844], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ku.gap.json b/pfam_gap_rates/Ku.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74bac434ce12784211496feae5df11cbd50ad615
--- /dev/null
+++ b/pfam_gap_rates/Ku.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Kunitz_legume.gap.json b/pfam_gap_rates/Kunitz_legume.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6cf734b059029d5e0ea271a3ccdc4a170bd20d5
--- /dev/null
+++ b/pfam_gap_rates/Kunitz_legume.gap.json
@@ -0,0 +1 @@
+{"family": "Kunitz_legume", "n_seqs": 226, "length": 206, "gap_rates": [0.1504424778761062, 0.13716814159292035, 0.13716814159292035, 0.13716814159292035, 0.13716814159292035, 0.13716814159292035, 0.13716814159292035, 0.13716814159292035, 0.13716814159292035, 0.13716814159292035, 0.13716814159292035, 0.13274336283185842, 0.13716814159292035, 0.12831858407079647, 0.12831858407079647, 0.12831858407079647, 0.12831858407079647, 0.13274336283185842, 0.12389380530973451, 0.12389380530973451, 0.15486725663716813, 0.15486725663716813, 0.1415929203539823, 0.12831858407079647, 0.23893805309734514, 0.6327433628318584, 0.9203539823008849, 0.9424778761061947, 0.9336283185840708, 0.8849557522123894, 0.11946902654867257, 0.11946902654867257, 0.12389380530973451, 0.11946902654867257, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.1415929203539823, 0.18584070796460178, 0.8539823008849557, 0.16371681415929204, 0.24778761061946902, 0.911504424778761, 0.11061946902654868, 0.11061946902654868, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.11061946902654868, 0.11504424778761062, 0.11061946902654868, 0.11946902654867257, 0.9469026548672567, 0.9203539823008849, 0.13716814159292035, 0.26548672566371684, 0.26991150442477874, 0.13274336283185842, 0.11061946902654868, 0.10619469026548672, 0.11061946902654868, 0.11061946902654868, 0.11061946902654868, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.37610619469026546, 0.22566371681415928, 0.7610619469026548, 0.4336283185840708, 0.3274336283185841, 0.15486725663716813, 0.12831858407079647, 0.12831858407079647, 0.11504424778761062, 0.9380530973451328, 0.10619469026548672, 0.10176991150442478, 0.09734513274336283, 0.09734513274336283, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.09292035398230089, 0.09734513274336283, 0.5309734513274337, 0.12389380530973451, 0.11504424778761062, 0.12389380530973451, 0.11946902654867257, 0.17699115044247787, 0.8628318584070797, 0.8097345132743363, 0.09734513274336283, 0.09734513274336283, 0.911504424778761, 0.12389380530973451, 0.915929203539823, 0.08849557522123894, 0.08849557522123894, 0.084070796460177, 0.084070796460177, 0.084070796460177, 0.084070796460177, 0.084070796460177, 0.20353982300884957, 0.1504424778761062, 0.1592920353982301, 0.22566371681415928, 0.2345132743362832, 0.19911504424778761, 0.18141592920353983, 0.9469026548672567, 0.1902654867256637, 0.13716814159292035, 0.09734513274336283, 0.09292035398230089, 0.09292035398230089, 0.09734513274336283, 0.09292035398230089, 0.10176991150442478, 0.30973451327433627, 0.3274336283185841, 0.415929203539823, 0.5088495575221239, 0.4646017699115044, 0.336283185840708, 0.252212389380531, 0.8982300884955752, 0.168141592920354, 0.12831858407079647, 0.08849557522123894, 0.07964601769911504, 0.0752212389380531, 0.0752212389380531, 0.0752212389380531, 0.0752212389380531, 0.0752212389380531, 0.0752212389380531, 0.07079646017699115, 0.8849557522123894, 0.08849557522123894, 0.11504424778761062, 0.168141592920354, 0.37168141592920356, 0.37168141592920356, 0.7831858407079646, 0.9070796460176991, 0.7300884955752213, 0.18584070796460178, 0.06637168141592921, 0.06637168141592921, 0.06637168141592921, 0.061946902654867256, 0.061946902654867256, 0.06637168141592921, 0.07079646017699115, 0.07079646017699115, 0.30973451327433627, 0.4557522123893805, 0.7831858407079646, 0.9247787610619469, 0.9336283185840708, 0.8849557522123894, 0.504424778761062, 0.39823008849557523, 0.22566371681415928, 0.09292035398230089, 0.18584070796460178, 0.17256637168141592, 0.13274336283185842, 0.12831858407079647, 0.09734513274336283, 0.09734513274336283, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.11946902654867257, 0.9292035398230089, 0.4911504424778761, 0.12831858407079647, 0.11946902654867257, 0.12831858407079647, 0.19469026548672566, 0.1415929203539823, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.5486725663716814, 0.12831858407079647, 0.13716814159292035, 0.13716814159292035, 0.1415929203539823, 0.911504424778761, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.14601769911504425, 0.14601769911504425, 0.14601769911504425, 0.29646017699115046, 0.4469026548672566], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LCCL.gap.json b/pfam_gap_rates/LCCL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fd556010a81b93f4b771fd207123c0a188d3736
--- /dev/null
+++ b/pfam_gap_rates/LCCL.gap.json
@@ -0,0 +1 @@
+{"family": "LCCL", "n_seqs": 506, "length": 134, "gap_rates": [0.6027667984189723, 0.525691699604743, 0.45652173913043476, 0.4525691699604743, 0.44466403162055335, 0.43873517786561267, 0.4308300395256917, 0.4268774703557312, 0.4288537549407115, 0.424901185770751, 0.36363636363636365, 0.7984189723320159, 0.8122529644268774, 0.8260869565217391, 0.8320158102766798, 0.8320158102766798, 0.8181818181818182, 0.8043478260869565, 0.7924901185770751, 0.5158102766798419, 0.43280632411067194, 0.3695652173913043, 0.30632411067193677, 0.21146245059288538, 0.18379446640316205, 0.12845849802371542, 0.10869565217391304, 0.09486166007905138, 0.08300395256916997, 0.07707509881422925, 0.07312252964426877, 0.05928853754940711, 0.05731225296442688, 0.05533596837944664, 0.05138339920948617, 0.04743083003952569, 0.05533596837944664, 0.8715415019762845, 0.0533596837944664, 0.05731225296442688, 0.05138339920948617, 0.05533596837944664, 0.6146245059288538, 0.9446640316205533, 0.6383399209486166, 0.5869565217391305, 0.03359683794466403, 0.02766798418972332, 0.025691699604743084, 0.023715415019762844, 0.023715415019762844, 0.023715415019762844, 0.021739130434782608, 0.6205533596837944, 0.7272727272727273, 0.7292490118577075, 0.7292490118577075, 0.7312252964426877, 0.7312252964426877, 0.7509881422924901, 0.758893280632411, 0.8122529644268774, 0.8399209486166008, 0.9130434782608695, 0.9387351778656127, 0.8735177865612648, 0.8181818181818182, 0.808300395256917, 0.7529644268774703, 0.7450592885375494, 0.7312252964426877, 0.7292490118577075, 0.7292490118577075, 0.7292490118577075, 0.7272727272727273, 0.567193675889328, 0.011857707509881422, 0.009881422924901186, 0.005928853754940711, 0.003952569169960474, 0.0, 0.0, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.003952569169960474, 0.001976284584980237, 0.001976284584980237, 0.4624505928853755, 0.03162055335968379, 0.007905138339920948, 0.011857707509881422, 0.009881422924901186, 0.007905138339920948, 0.009881422924901186, 0.007905138339920948, 0.007905138339920948, 0.009881422924901186, 0.009881422924901186, 0.011857707509881422, 0.011857707509881422, 0.021739130434782608, 0.023715415019762844, 0.025691699604743084, 0.025691699604743084, 0.029644268774703556, 0.029644268774703556, 0.029644268774703556, 0.037549407114624504, 0.039525691699604744, 0.043478260869565216, 0.8972332015810277, 0.05533596837944664, 0.06324110671936758, 0.06719367588932806, 0.07114624505928854, 0.07707509881422925, 0.09288537549407115, 0.1225296442687747, 0.16996047430830039, 0.22924901185770752, 0.33992094861660077, 0.466403162055336, 0.642292490118577, 0.7292490118577075, 0.7628458498023716, 0.808300395256917, 0.8774703557312253], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LGT.gap.json b/pfam_gap_rates/LGT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5f20d78841b503637d4fbe2b5787957a65f06d5
--- /dev/null
+++ b/pfam_gap_rates/LGT.gap.json
@@ -0,0 +1 @@
+{"family": "LGT", "n_seqs": 2364, "length": 321, "gap_rates": [0.5194585448392555, 0.41455160744500846, 0.3134517766497462, 0.2263113367174281, 0.19839255499153977, 0.1831641285956007, 0.862098138747885, 0.16751269035532995, 0.2707275803722504, 0.1260575296108291, 0.11336717428087986, 0.09983079526226735, 0.0922165820642978, 0.08375634517766498, 0.07952622673434856, 0.07952622673434856, 0.07191201353637902, 0.06387478849407784, 0.06175972927241963, 0.05668358714043993, 0.05372250423011844, 0.0532994923857868, 0.05203045685279188, 0.050761421319796954, 0.04991539763113367, 0.049069373942470386, 0.049069373942470386, 0.048646362098138746, 0.048223350253807105, 0.048646362098138746, 0.048223350253807105, 0.047377326565143825, 0.047377326565143825, 0.046954314720812185, 0.04568527918781726, 0.04568527918781726, 0.10109983079526226, 0.856175972927242, 0.9077834179357022, 0.9208967851099831, 0.9022842639593909, 0.8409475465313029, 0.07656514382402707, 0.077834179357022, 0.07148900169204737, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LIAS_N.gap.json b/pfam_gap_rates/LIAS_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f540bc95c2dcc972c80dc50cdf822c8095b598fd
--- /dev/null
+++ b/pfam_gap_rates/LIAS_N.gap.json
@@ -0,0 +1 @@
+{"family": "LIAS_N", "n_seqs": 1093, "length": 99, "gap_rates": [0.9451052150045746, 0.9423604757548033, 0.9322964318389753, 0.9240622140896615, 0.9258920402561757, 0.9002744739249772, 0.8947849954254345, 0.8865507776761208, 0.8764867337602927, 0.8636779505946935, 0.8545288197621226, 0.848124428179323, 0.8426349496797805, 0.8371454711802379, 0.8307410795974383, 0.8252516010978957, 0.818847209515096, 0.8151875571820677, 0.8115279048490394, 0.8096980786825252, 0.807868252516011, 0.8069533394327539, 0.8060384263494969, 0.8069533394327539, 0.8032936870997255, 0.8014638609332113, 0.7968892955169259, 0.7932296431838975, 0.7895699908508692, 0.7895699908508692, 0.787740164684355, 0.7868252516010978, 0.7849954254345837, 0.7840805123513266, 0.7840805123513266, 0.7840805123513266, 0.7840805123513266, 0.7785910338517841, 0.7767612076852699, 0.7758462946020128, 0.9405306495882891, 0.8664226898444648, 0.8289112534309241, 0.8115279048490394, 0.7913998170173834, 0.7648673376029277, 0.7447392497712717, 0.7154620311070449, 0.6633119853613907, 0.6450137236962489, 0.616651418115279, 0.6020128087831657, 0.5580969807868252, 0.4839890210430009, 0.494967978042086, 0.43000914913083255, 0.39066788655077767, 0.909423604757548, 0.9414455626715462, 0.8508691674290942, 0.3193046660567246, 0.3010064043915828, 0.08325709057639524, 0.059469350411710885, 0.008234217749313814, 0.0054894784995425435, 0.0054894784995425435, 0.0054894784995425435, 0.0027447392497712718, 0.0027447392497712718, 0.0036596523330283625, 0.0027447392497712718, 0.0009149130832570906, 0.0009149130832570906, 0.009149130832570906, 0.0009149130832570906, 0.0018298261665141812, 0.0009149130832570906, 0.0009149130832570906, 0.0009149130832570906, 0.0009149130832570906, 0.0009149130832570906, 0.0009149130832570906, 0.0009149130832570906, 0.0018298261665141812, 0.0018298261665141812, 0.0018298261665141812, 0.0009149130832570906, 0.0009149130832570906, 0.0009149130832570906, 0.0009149130832570906, 0.0009149130832570906, 0.0009149130832570906, 0.0018298261665141812, 0.0018298261665141812, 0.0018298261665141812, 0.0018298261665141812, 0.0018298261665141812, 0.0018298261665141812], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LTD.gap.json b/pfam_gap_rates/LTD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fc6c35f9dd526b942d878ed133cd3089f49750f
--- /dev/null
+++ b/pfam_gap_rates/LTD.gap.json
@@ -0,0 +1 @@
+{"family": "LTD", "n_seqs": 1815, "length": 160, "gap_rates": [0.7977961432506887, 0.615426997245179, 0.4644628099173554, 0.30413223140495865, 0.16363636363636364, 0.1046831955922865, 0.07162534435261708, 0.05399449035812672, 0.047382920110192836, 0.046831955922865015, 0.04297520661157025, 0.04022038567493113, 0.03526170798898071, 0.03471074380165289, 0.03636363636363636, 0.02975206611570248, 0.25179063360881543, 0.1840220385674931, 0.21046831955922865, 0.20606060606060606, 0.34655647382920113, 0.37300275482093664, 0.6550964187327823, 0.818732782369146, 0.8688705234159779, 0.9349862258953168, 0.8418732782369146, 0.7079889807162535, 0.4743801652892562, 0.006611570247933884, 0.0027548209366391185, 0.0022038567493112946, 0.0022038567493112946, 0.001652892561983471, 0.001652892561983471, 0.005509641873278237, 0.005509641873278237, 0.001652892561983471, 0.003856749311294766, 0.0027548209366391185, 0.9333333333333333, 0.0011019283746556473, 0.0, 0.0, 0.0005509641873278236, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005509641873278236, 0.07988980716253444, 0.06501377410468319, 0.3955922865013774, 0.6578512396694215, 0.8732782369146006, 0.9327823691460055, 0.7471074380165289, 0.5019283746556474, 0.24242424242424243, 0.11790633608815428, 0.1674931129476584, 0.16914600550964187, 0.16639118457300275, 0.13388429752066117, 0.10523415977961433, 0.15702479338842976, 0.7146005509641873, 0.7669421487603306, 0.8440771349862259, 0.8815426997245179, 0.9129476584022038, 0.931129476584022, 0.89366391184573, 0.8639118457300275, 0.8, 0.7349862258953168, 0.6898071625344353, 0.007713498622589532, 0.006611570247933884, 0.0049586776859504135, 0.003856749311294766, 0.004407713498622589, 0.004407713498622589, 0.005509641873278237, 0.006060606060606061, 0.007162534435261708, 0.006611570247933884, 0.008815426997245178, 0.009917355371900827, 0.011570247933884297, 0.051790633608815424, 0.325068870523416, 0.36639118457300274, 0.37300275482093664, 0.7267217630853995, 0.781267217630854, 0.8490358126721763, 0.8914600550964187, 0.9212121212121213, 0.9415977961432507, 0.9322314049586777, 0.9068870523415978, 0.8661157024793389, 0.8110192837465565, 0.7465564738292011, 0.7046831955922865, 0.41652892561983473, 0.5371900826446281, 0.5118457300275482, 0.39834710743801655, 0.3746556473829201, 0.47768595041322315, 0.465564738292011, 0.3944903581267218, 0.32011019283746556, 0.7559228650137741, 0.9245179063360881, 0.6451790633608815, 0.21322314049586777, 0.18236914600550963, 0.153168044077135, 0.13663911845730028, 0.13333333333333333, 0.12617079889807162, 0.0837465564738292, 0.7173553719008264, 0.7559228650137741, 0.8011019283746557, 0.9410468319559229, 0.946556473829201, 0.859504132231405, 0.7801652892561983, 0.7338842975206612, 0.6567493112947659, 0.07933884297520662, 0.0765840220385675, 0.07603305785123966, 0.07713498622589532, 0.0765840220385675, 0.07713498622589532, 0.07823691460055096, 0.09201101928374655, 0.09256198347107437, 0.21212121212121213, 0.13663911845730028, 0.14214876033057852, 0.15041322314049588, 0.15922865013774104, 0.9415977961432507, 0.17520661157024794, 0.18953168044077134, 0.21322314049586777, 0.2628099173553719, 0.3559228650137741, 0.4666666666666667, 0.6776859504132231], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LZ_Tnp_IS481.gap.json b/pfam_gap_rates/LZ_Tnp_IS481.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73be3c0607acfadb31f456a77d912c5bfc9c213c
--- /dev/null
+++ b/pfam_gap_rates/LZ_Tnp_IS481.gap.json
@@ -0,0 +1 @@
+{"family": "LZ_Tnp_IS481", "n_seqs": 240, "length": 85, "gap_rates": [0.5208333333333334, 0.7291666666666666, 0.2375, 0.20416666666666666, 0.2, 0.18333333333333332, 0.18333333333333332, 0.175, 0.15416666666666667, 0.15416666666666667, 0.15416666666666667, 0.14166666666666666, 0.13333333333333333, 0.12916666666666668, 0.12916666666666668, 0.12083333333333333, 0.10416666666666667, 0.08333333333333333, 0.075, 0.06666666666666667, 0.05416666666666667, 0.12916666666666668, 0.11666666666666667, 0.07916666666666666, 0.058333333333333334, 0.0375, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.029166666666666667, 0.025, 0.020833333333333332, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.008333333333333333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.020833333333333332, 0.12916666666666668, 0.09583333333333334, 0.09583333333333334, 0.13333333333333333, 0.020833333333333332, 0.025, 0.03333333333333333, 0.0375, 0.03333333333333333, 0.041666666666666664, 0.04583333333333333, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.0625, 0.07083333333333333, 0.0875, 0.09166666666666666, 0.10416666666666667, 0.10416666666666667, 0.1125, 0.14583333333333334, 0.12916666666666668, 0.14166666666666666, 0.14583333333333334, 0.15, 0.17916666666666667, 0.2125, 0.22083333333333333, 0.24166666666666667, 0.5458333333333333, 0.8958333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LamB_YcsF.gap.json b/pfam_gap_rates/LamB_YcsF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0280c7181edf29b392501a6b45ebd347ff1c966
--- /dev/null
+++ b/pfam_gap_rates/LamB_YcsF.gap.json
@@ -0,0 +1 @@
+{"family": "LamB_YcsF", "n_seqs": 849, "length": 246, "gap_rates": [0.2249705535924617, 0.12838633686690223, 0.06713780918727916, 0.06595995288574794, 0.06478209658421673, 0.06478209658421673, 0.05653710247349823, 0.05653710247349823, 0.05653710247349823, 0.06007067137809187, 0.15076560659599528, 0.14840989399293286, 0.160188457008245, 0.15783274440518258, 0.15547703180212014, 0.07538280329799764, 0.0624263839811543, 0.05182567726737338, 0.04946996466431095, 0.04711425206124853, 0.04711425206124853, 0.045936395759717315, 0.04122497055359246, 0.04004711425206125, 0.03769140164899882, 0.03651354534746761, 0.03651354534746761, 0.03651354534746761, 0.03651354534746761, 0.03651354534746761, 0.03651354534746761, 0.03651354534746761, 0.03651354534746761, 0.03651354534746761, 0.03651354534746761, 0.03651354534746761, 0.0353356890459364, 0.0353356890459364, 0.0353356890459364, 0.0353356890459364, 0.03651354534746761, 0.04004711425206125, 0.03415783274440518, 0.03415783274440518, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LicD.gap.json b/pfam_gap_rates/LicD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1944c697c03303ced467119a9b2e3eef2eade5a3
--- /dev/null
+++ b/pfam_gap_rates/LicD.gap.json
@@ -0,0 +1 @@
+{"family": "LicD", "n_seqs": 950, "length": 259, "gap_rates": [0.5947368421052631, 0.4842105263157895, 0.35157894736842105, 0.3, 0.21473684210526317, 0.2, 0.16, 0.12, 0.11263157894736842, 0.11052631578947368, 0.10842105263157895, 0.10736842105263159, 0.10736842105263159, 0.10736842105263159, 0.1031578947368421, 0.1031578947368421, 0.10210526315789474, 0.10210526315789474, 0.10210526315789474, 0.10210526315789474, 0.1031578947368421, 0.10210526315789474, 0.10210526315789474, 0.10105263157894737, 0.1, 0.09894736842105263, 0.1, 0.09894736842105263, 0.09894736842105263, 0.09894736842105263, 0.09789473684210526, 0.09789473684210526, 0.09473684210526316, 0.10105263157894737, 0.10526315789473684, 0.12, 0.13052631578947368, 0.14, 0.15473684210526314, 0.1705263157894737, 0.18210526315789474, 0.20842105263157895, 0.23578947368421052, 0.23789473684210527, 0.24, 0.2505263157894737, 0.24947368421052632, 0.2505263157894737, 0.2557894736842105, 0.8442105263157895, 0.5052631578947369, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LigA.gap.json b/pfam_gap_rates/LigA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14f18d80056b1a4efcee6ded5c20534fbb576442
--- /dev/null
+++ b/pfam_gap_rates/LigA.gap.json
@@ -0,0 +1 @@
+{"family": "LigA", "n_seqs": 127, "length": 88, "gap_rates": [0.12598425196850394, 0.07086614173228346, 0.031496062992125984, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.8503937007874016, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.047244094488188976, 0.05511811023622047, 0.05511811023622047, 0.06299212598425197, 0.07086614173228346, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.09448818897637795, 0.10236220472440945, 0.10236220472440945, 0.11023622047244094, 0.12598425196850394, 0.12598425196850394, 0.13385826771653545, 0.13385826771653545, 0.13385826771653545, 0.13385826771653545, 0.13385826771653545, 0.14173228346456693, 0.14173228346456693, 0.1732283464566929, 0.1732283464566929, 0.18110236220472442, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1968503937007874, 0.7086614173228346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LigB.gap.json b/pfam_gap_rates/LigB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..674b4f46606a01cd73c7794b6cb059e67a7aef47
--- /dev/null
+++ b/pfam_gap_rates/LigB.gap.json
@@ -0,0 +1 @@
+{"family": "LigB", "n_seqs": 1405, "length": 316, "gap_rates": [0.6391459074733096, 0.4604982206405694, 0.3807829181494662, 0.34661921708185056, 0.3366548042704626, 0.3302491103202847, 0.3295373665480427, 0.3281138790035587, 0.3288256227758007, 0.32669039145907475, 0.3530249110320285, 0.33451957295373663, 0.3295373665480427, 0.3274021352313167, 0.3295373665480427, 0.802846975088968, 0.6768683274021352, 0.4555160142348754, 0.4213523131672598, 0.4128113879003559, 0.37722419928825623, 0.398576512455516, 0.6498220640569395, 0.600711743772242, 0.503202846975089, 0.5409252669039146, 0.45409252669039146, 0.4106761565836299, 0.3437722419928826, 0.2896797153024911, 0.2889679715302491, 0.24768683274021353, 0.18718861209964413, 0.1686832740213523, 0.1601423487544484, 0.1480427046263345, 0.13736654804270462, 0.1309608540925267, 0.14448398576512456, 0.16583629893238433, 0.11530249110320284, 0.80711743772242, 0.59644128113879, 0.06334519572953737, 0.06334519572953737, 0.06263345195729537, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Lig_chan-Glu_bd.gap.json b/pfam_gap_rates/Lig_chan-Glu_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de4f29eaf9e70851b2501138be9c391347b0efa6
--- /dev/null
+++ b/pfam_gap_rates/Lig_chan-Glu_bd.gap.json
@@ -0,0 +1 @@
+{"family": "Lig_chan-Glu_bd", "n_seqs": 1224, "length": 127, "gap_rates": [0.8937908496732027, 0.5931372549019608, 0.477124183006536, 0.45751633986928103, 0.44281045751633985, 0.434640522875817, 0.41748366013071897, 0.40032679738562094, 0.37745098039215685, 0.36519607843137253, 0.3553921568627451, 0.3472222222222222, 0.3341503267973856, 0.33088235294117646, 0.3292483660130719, 0.4395424836601307, 0.8374183006535948, 0.8962418300653595, 0.940359477124183, 0.9477124183006536, 0.9330065359477124, 0.8464052287581699, 0.6160130718954249, 0.4599673202614379, 0.47058823529411764, 0.39950980392156865, 0.32516339869281047, 0.2916666666666667, 0.2638888888888889, 0.24019607843137256, 0.2222222222222222, 0.2173202614379085, 0.869281045751634, 0.14950980392156862, 0.11029411764705882, 0.9215686274509803, 0.08088235294117647, 0.07352941176470588, 0.06290849673202614, 0.05718954248366013, 0.05392156862745098, 0.049019607843137254, 0.04330065359477124, 0.0392156862745098, 0.03758169934640523, 0.03676470588235294, 0.03431372549019608, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.031862745098039214, 0.029411764705882353, 0.027777777777777776, 0.02696078431372549, 0.026143790849673203, 0.027777777777777776, 0.026143790849673203, 0.02696078431372549, 0.028594771241830064, 0.026143790849673203, 0.04411764705882353, 0.05065359477124183, 0.05392156862745098, 0.05473856209150327, 0.05065359477124183, 0.03431372549019608, 0.028594771241830064, 0.024509803921568627, 0.02287581699346405, 0.026143790849673203, 0.032679738562091505, 0.0457516339869281, 0.13725490196078433, 0.5931372549019608, 0.9436274509803921, 0.9419934640522876, 0.13316993464052287, 0.021241830065359478, 0.017973856209150325, 0.018790849673202614, 0.01715686274509804, 0.017973856209150325, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.02042483660130719, 0.0196078431372549, 0.026143790849673203, 0.03431372549019608, 0.03758169934640523, 0.041666666666666664, 0.04330065359477124, 0.04656862745098039, 0.05392156862745098, 0.05473856209150327, 0.05555555555555555, 0.0457516339869281, 0.04738562091503268, 0.04820261437908497, 0.04656862745098039, 0.04738562091503268, 0.04820261437908497, 0.049836601307189546, 0.049836601307189546, 0.049836601307189546, 0.049836601307189546, 0.05065359477124183, 0.056372549019607844, 0.05800653594771242, 0.05800653594771242, 0.06290849673202614, 0.06454248366013073, 0.06781045751633986, 0.0727124183006536, 0.07434640522875817, 0.08251633986928104, 0.9444444444444444, 0.0857843137254902, 0.08823529411764706, 0.09313725490196079, 0.09640522875816994, 0.10130718954248366, 0.1111111111111111, 0.14705882352941177, 0.2042483660130719, 0.40032679738562094, 0.8047385620915033], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lin0512_fam.gap.json b/pfam_gap_rates/Lin0512_fam.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d734751d64adea62ae04d92cb8225561ba6c45b2
--- /dev/null
+++ b/pfam_gap_rates/Lin0512_fam.gap.json
@@ -0,0 +1 @@
+{"family": "Lin0512_fam", "n_seqs": 187, "length": 119, "gap_rates": [0.5454545454545454, 0.0748663101604278, 0.06951871657754011, 0.06417112299465241, 0.058823529411764705, 0.053475935828877004, 0.053475935828877004, 0.0374331550802139, 0.03208556149732621, 0.03208556149732621, 0.0374331550802139, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.016042780748663103, 0.016042780748663103, 0.32085561497326204, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.016042780748663103, 0.46524064171123, 0.33689839572192515, 0.058823529411764705, 0.0427807486631016, 0.34759358288770054, 0.26737967914438504, 0.36363636363636365, 0.3155080213903743, 0.2887700534759358, 0.03208556149732621, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.7486631016042781, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.8502673796791443, 0.8449197860962567, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.03208556149732621, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.7754010695187166, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.5828877005347594, 0.34759358288770054, 0.34759358288770054, 0.34759358288770054, 0.33689839572192515, 0.3155080213903743, 0.06417112299465241, 0.0374331550802139, 0.0481283422459893, 0.053475935828877004, 0.20320855614973263, 0.29411764705882354, 0.0481283422459893, 0.0427807486631016, 0.0427807486631016, 0.0427807486631016, 0.0427807486631016, 0.0427807486631016, 0.0427807486631016, 0.0481283422459893, 0.0481283422459893, 0.0481283422459893, 0.0481283422459893, 0.053475935828877004, 0.22459893048128343], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipin_mid.gap.json b/pfam_gap_rates/Lipin_mid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b817caca8060cb6f554fde25270f61fc1c796717
--- /dev/null
+++ b/pfam_gap_rates/Lipin_mid.gap.json
@@ -0,0 +1 @@
+{"family": "Lipin_mid", "n_seqs": 228, "length": 122, "gap_rates": [0.39473684210526316, 0.10087719298245613, 0.09210526315789473, 0.09210526315789473, 0.09210526315789473, 0.09210526315789473, 0.08771929824561403, 0.09210526315789473, 0.08771929824561403, 0.4298245614035088, 0.9298245614035088, 0.5131578947368421, 0.12719298245614036, 0.10087719298245613, 0.6929824561403509, 0.08771929824561403, 0.07017543859649122, 0.06578947368421052, 0.05263157894736842, 0.039473684210526314, 0.9429824561403509, 0.02631578947368421, 0.02631578947368421, 0.021929824561403508, 0.021929824561403508, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.013157894736842105, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.6491228070175439, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.9078947368421053, 0.8728070175438597, 0.0, 0.0, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.013157894736842105, 0.013157894736842105, 0.017543859649122806, 0.021929824561403508, 0.02631578947368421, 0.03070175438596491, 0.039473684210526314, 0.039473684210526314, 0.05701754385964912, 0.05701754385964912, 0.06578947368421052, 0.06578947368421052, 0.07456140350877193, 0.07894736842105263, 0.10526315789473684, 0.11842105263157894, 0.12719298245614036, 0.2543859649122807, 0.9166666666666666, 0.9385964912280702, 0.9122807017543859, 0.3201754385964912, 0.3508771929824561, 0.36403508771929827, 0.35526315789473684, 0.33771929824561403, 0.7675438596491229, 0.8464912280701754, 0.9210526315789473, 0.9342105263157895, 0.9385964912280702, 0.9298245614035088, 0.8771929824561403, 0.8026315789473685, 0.7412280701754386, 0.6403508771929824, 0.6052631578947368, 0.5921052631578947, 0.5701754385964912, 0.5701754385964912, 0.5570175438596491, 0.5307017543859649, 0.5350877192982456, 0.39473684210526316, 0.30701754385964913, 0.3157894736842105, 0.31140350877192985, 0.35964912280701755, 0.37280701754385964, 0.37280701754385964], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipocalin_4.gap.json b/pfam_gap_rates/Lipocalin_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb51456c3b9bda3f7df10c48556a7cdb29ccedc8
--- /dev/null
+++ b/pfam_gap_rates/Lipocalin_4.gap.json
@@ -0,0 +1 @@
+{"family": "Lipocalin_4", "n_seqs": 174, "length": 134, "gap_rates": [0.367816091954023, 0.21264367816091953, 0.14942528735632185, 0.08045977011494253, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.9137931034482759, 0.9367816091954023, 0.8620689655172413, 0.06896551724137931, 0.14367816091954022, 0.13793103448275862, 0.11494252873563218, 0.5, 0.5862068965517241, 0.6839080459770115, 0.7816091954022989, 0.9310344827586207, 0.9482758620689655, 0.9425287356321839, 0.8333333333333334, 0.764367816091954, 0.6264367816091954, 0.5402298850574713, 0.45977011494252873, 0.11494252873563218, 0.20114942528735633, 0.1896551724137931, 0.05747126436781609, 0.6839080459770115, 0.8160919540229885, 0.9137931034482759, 0.764367816091954, 0.603448275862069, 0.04597701149425287, 0.09195402298850575, 0.10344827586206896, 0.05172413793103448, 0.040229885057471264, 0.017241379310344827, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.07471264367816093, 0.9137931034482759, 0.16091954022988506, 0.21264367816091953, 0.11494252873563218, 0.06896551724137931, 0.06896551724137931, 0.9425287356321839, 0.011494252873563218, 0.005747126436781609, 0.028735632183908046, 0.3218390804597701, 0.27586206896551724, 0.8850574712643678, 0.10344827586206896, 0.09770114942528736, 0.3218390804597701, 0.22413793103448276, 0.25287356321839083, 0.21839080459770116, 0.14367816091954022, 0.10344827586206896, 0.39655172413793105, 0.867816091954023, 0.9310344827586207, 0.9425287356321839, 0.9367816091954023, 0.896551724137931, 0.8505747126436781, 0.034482758620689655, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.022988505747126436, 0.8218390804597702, 0.6781609195402298, 0.028735632183908046, 0.05172413793103448, 0.07471264367816093, 0.040229885057471264, 0.05747126436781609, 0.10919540229885058, 0.764367816091954, 0.8045977011494253, 0.8505747126436781, 0.8793103448275862, 0.9367816091954023, 0.9482758620689655, 0.9482758620689655, 0.9137931034482759, 0.8620689655172413, 0.8333333333333334, 0.7931034482758621, 0.7183908045977011, 0.15517241379310345, 0.1781609195402299, 0.13793103448275862, 0.16091954022988506, 0.9482758620689655, 0.29310344827586204, 0.9195402298850575, 0.21839080459770116, 0.1724137931034483, 0.16091954022988506, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.16666666666666666, 0.16091954022988506, 0.1724137931034483, 0.1724137931034483, 0.19540229885057472, 0.20689655172413793, 0.23563218390804597, 0.27586206896551724, 0.45977011494252873], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipoprotein_15.gap.json b/pfam_gap_rates/Lipoprotein_15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5ddef4fdcd3baa9bbfbea9901593b2610af301e
--- /dev/null
+++ b/pfam_gap_rates/Lipoprotein_15.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Lipoprotein_18.gap.json b/pfam_gap_rates/Lipoprotein_18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e10ec059d7e2bc1a66eb0ac6508e32f15987ff61
--- /dev/null
+++ b/pfam_gap_rates/Lipoprotein_18.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Lipoprotein_9.gap.json b/pfam_gap_rates/Lipoprotein_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36380aa32fd37ddb0957c6a70c117df43f17496e
--- /dev/null
+++ b/pfam_gap_rates/Lipoprotein_9.gap.json
@@ -0,0 +1 @@
+{"family": "Lipoprotein_9", "n_seqs": 1553, "length": 250, "gap_rates": [0.1751448808757244, 0.11268512556342562, 0.09723116548615583, 0.0901481004507405, 0.08692852543464263, 0.08113329040566646, 0.1571152607855763, 0.07405022537025113, 0.06825499034127495, 0.06374758531873792, 0.05859626529298133, 0.05730843528654218, 0.054732775273663874, 0.07855763039278815, 0.04829362524146812, 0.8493238892466195, 0.054732775273663874, 0.04700579523502898, 0.04571796522858983, 0.04571796522858983, 0.0463618802318094, 0.04764971023824855, 0.04764971023824855, 0.049581455247907275, 0.044430135222150675, 0.044430135222150675, 0.8512556342562781, 0.043142305215711524, 0.04185447520927238, 0.04185447520927238, 0.0412105602060528, 0.04056664520283323, 0.04056664520283323, 0.04056664520283323, 0.0412105602060528, 0.04249839021249195, 0.0412105602060528, 0.04185447520927238, 0.04056664520283323, 0.04185447520927238, 0.04185447520927238, 0.04185447520927238, 0.0412105602060528, 0.0412105602060528, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LptC.gap.json b/pfam_gap_rates/LptC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a23333092457070e3bc06a14a2cc1f7f32c43884
--- /dev/null
+++ b/pfam_gap_rates/LptC.gap.json
@@ -0,0 +1 @@
+{"family": "LptC", "n_seqs": 942, "length": 187, "gap_rates": [0.7611464968152867, 0.6369426751592356, 0.5456475583864119, 0.5042462845010616, 0.47558386411889597, 0.4564755838641189, 0.4447983014861996, 0.43842887473460723, 0.43312101910828027, 0.4309978768577495, 0.42462845010615713, 0.4267515923566879, 0.42038216560509556, 0.4171974522292994, 0.416135881104034, 0.416135881104034, 0.4150743099787686, 0.4171974522292994, 0.42250530785562634, 0.43312101910828027, 0.9150743099787686, 0.9384288747346072, 0.8142250530785563, 0.6273885350318471, 0.5116772823779193, 0.4426751592356688, 0.4002123142250531, 0.35668789808917195, 0.33970276008492567, 0.32590233545647557, 0.3227176220806794, 0.3174097664543524, 0.31210191082802546, 0.31210191082802546, 0.3036093418259023, 0.2951167728237792, 0.2908704883227176, 0.2791932059447983, 0.27282377919320594, 0.2611464968152866, 0.25477707006369427, 0.25796178343949044, 0.2537154989384289, 0.24203821656050956, 0.23354564755838642, 0.23142250530785563, 0.31104033970276007, 0.21656050955414013, 0.20063694267515925, 0.18152866242038215, 0.18577494692144372, 0.21762208067940553, 0.2197452229299363, 0.16560509554140126, 0.1592356687898089, 0.15498938428874734, 0.15180467091295116, 0.14968152866242038, 0.14861995753715498, 0.14861995753715498, 0.1464968152866242, 0.1464968152866242, 0.1475583864118896, 0.14437367303609341, 0.14331210191082802, 0.14225053078556263, 0.8842887473460722, 0.1762208067940552, 0.15711252653927812, 0.13800424628450106, 0.173036093418259, 0.9447983014861996, 0.14012738853503184, 0.13481953290870488, 0.12738853503184713, 0.11995753715498939, 0.11358811040339703, 0.1040339702760085, 0.10084925690021232, 0.09766454352441614, 0.09023354564755838, 0.09023354564755838, 0.08174097664543524, 0.07218683651804671, 0.07006369426751592, 0.06794055201698514, 0.14225053078556263, 0.9023354564755839, 0.9299363057324841, 0.6985138004246284, 0.06050955414012739, 0.0435244161358811, 0.036093418259023353, 0.02653927813163482, 0.021231422505307854, 0.021231422505307854, 0.021231422505307854, 0.021231422505307854, 0.021231422505307854, 0.022292993630573247, 0.022292993630573247, 0.018046709129511677, 0.018046709129511677, 0.018046709129511677, 0.12845010615711253, 0.03078556263269639, 0.018046709129511677, 0.018046709129511677, 0.016985138004246284, 0.016985138004246284, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.016985138004246284, 0.016985138004246284, 0.01910828025477707, 0.018046709129511677, 0.018046709129511677, 0.021231422505307854, 0.022292993630573247, 0.6326963906581741, 0.6252653927813163, 0.6210191082802548, 0.4861995753715499, 0.11571125265392782, 0.9479830148619958, 0.79723991507431, 0.058386411889596604, 0.045647558386411886, 0.040339702760084924, 0.027600849256900213, 0.027600849256900213, 0.02653927813163482, 0.02653927813163482, 0.02653927813163482, 0.025477707006369428, 0.027600849256900213, 0.029723991507430998, 0.03078556263269639, 0.03078556263269639, 0.03503184713375796, 0.037154989384288746, 0.040339702760084924, 0.04670912951167728, 0.049893842887473464, 0.054140127388535034, 0.054140127388535034, 0.05307855626326964, 0.054140127388535034, 0.05626326963906582, 0.05626326963906582, 0.059447983014861996, 0.06157112526539278, 0.06369426751592357, 0.06581740976645435, 0.07218683651804671, 0.07430997876857749, 0.07855626326963906, 0.945859872611465, 0.910828025477707, 0.08280254777070063, 0.08280254777070063, 0.08492569002123142, 0.08598726114649681, 0.0870488322717622, 0.08917197452229299, 0.09235668789808917, 0.09447983014861996, 0.09660297239915075, 0.10615711252653928, 0.11464968152866242, 0.1305732484076433, 0.14968152866242038, 0.15817409766454352, 0.17197452229299362, 0.18152866242038215, 0.208067940552017, 0.2208067940552017, 0.2770700636942675, 0.31104033970276007, 0.3630573248407643, 0.3832271762208068, 0.4267515923566879, 0.5169851380042463, 0.5881104033970276, 0.7091295116772823, 0.851380042462845], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lyase_1.gap.json b/pfam_gap_rates/Lyase_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b42bce1a2beb57f3bbb7d036eaec22178bbc5be
--- /dev/null
+++ b/pfam_gap_rates/Lyase_1.gap.json
@@ -0,0 +1 @@
+{"family": "Lyase_1", "n_seqs": 5000, "length": 338, "gap_rates": [0.5146, 0.452, 0.4346, 0.4234, 0.418, 0.3832, 0.3234, 0.2962, 0.2794, 0.2698, 0.2624, 0.2494, 0.2432, 0.2382, 0.2354, 0.2332, 0.231, 0.2286, 0.2244, 0.2166, 0.2106, 0.209, 0.2056, 0.203, 0.203, 0.4296, 0.369, 0.364, 0.3576, 0.3656, 0.6994, 0.7002, 0.8696, 0.8906, 0.7032, 0.6994, 0.6994, 0.1744, 0.1706, 0.1654, 0.1604, 0.157, 0.1564, 0.1546, 0.1506, 0.148, 0.146, 0.144, 0.143, 0.1402, 0.1388, 0.141, 0.143, 0.6924, 0.7322, 0.6972, 0.6658, 0.278, 0.2686, 0.2038, 0.1776, 0.131, 0.129, 0.1298, 0.13, 0.1288, 0.129, 0.1282, 0.1284, 0.132, 0.1296, 0.1278, 0.1256, 0.5478, 0.1602, 0.1482, 0.1404, 0.1364, 0.4336, 0.151, 0.1418, 0.1078, 0.1026, 0.0982, 0.0976, 0.096, 0.0954, 0.0936, 0.0916, 0.091, 0.0902, 0.0896, 0.0894, 0.0884, 0.0892, 0.087, 0.2394, 0.0922, 0.0844, 0.079, 0.0774, 0.0766, 0.0802, 0.693, 0.7366, 0.7106, 0.6742, 0.5314, 0.5392, 0.5314, 0.4852, 0.6092, 0.7138, 0.7568, 0.949, 0.7236, 0.6424, 0.5742, 0.4968, 0.4828, 0.3766, 0.0536, 0.0512, 0.0488, 0.0464, 0.0442, 0.0414, 0.04, 0.0398, 0.0398, 0.0392, 0.039, 0.0394, 0.0394, 0.0394, 0.0394, 0.0392, 0.0392, 0.0392, 0.0394, 0.0392, 0.0398, 0.0378, 0.0372, 0.0372, 0.037, 0.0362, 0.0366, 0.036, 0.5866, 0.0438, 0.1356, 0.037, 0.0366, 0.0358, 0.0358, 0.0358, 0.0368, 0.0358, 0.036, 0.0362, 0.0358, 0.036, 0.0354, 0.0352, 0.0352, 0.0354, 0.035, 0.0352, 0.0364, 0.0388, 0.0376, 0.0364, 0.0374, 0.0362, 0.0334, 0.0332, 0.0334, 0.034, 0.0346, 0.0348, 0.035, 0.0342, 0.0344, 0.0342, 0.0338, 0.0336, 0.0332, 0.0334, 0.0334, 0.0332, 0.0332, 0.0366, 0.0362, 0.0332, 0.033, 0.0334, 0.0332, 0.0328, 0.0324, 0.0328, 0.0326, 0.0326, 0.0328, 0.0338, 0.0338, 0.0476, 0.0406, 0.041, 0.0354, 0.038, 0.0382, 0.4028, 0.1252, 0.1232, 0.0412, 0.0374, 0.0352, 0.036, 0.0372, 0.0374, 0.037, 0.1696, 0.16, 0.0376, 0.037, 0.0368, 0.0366, 0.0368, 0.037, 0.0376, 0.0374, 0.0374, 0.0382, 0.0404, 0.4548, 0.4388, 0.332, 0.0444, 0.039, 0.0378, 0.0382, 0.038, 0.038, 0.0384, 0.8702, 0.8464, 0.481, 0.1346, 0.1368, 0.076, 0.4736, 0.4682, 0.5566, 0.4496, 0.0844, 0.0612, 0.0396, 0.038, 0.0408, 0.0422, 0.1292, 0.073, 0.0704, 0.0348, 0.0344, 0.0334, 0.0332, 0.033, 0.0332, 0.0344, 0.0354, 0.034, 0.0324, 0.0324, 0.0328, 0.0326, 0.0324, 0.0324, 0.0324, 0.0322, 0.032, 0.032, 0.0318, 0.0308, 0.0308, 0.0304, 0.0304, 0.0306, 0.0304, 0.0304, 0.0302, 0.0304, 0.0302, 0.0302, 0.0302, 0.2694, 0.249, 0.6742, 0.0374, 0.0342, 0.0326, 0.0332, 0.033, 0.0332, 0.0336, 0.0344, 0.035, 0.0348, 0.0336, 0.0346, 0.3236, 0.034, 0.0328, 0.033, 0.0332, 0.0326, 0.0328, 0.033, 0.0334, 0.0338, 0.034, 0.0342, 0.0342, 0.0362, 0.0368, 0.0382, 0.0384, 0.0406, 0.062, 0.078, 0.164, 0.1878, 0.223, 0.2696, 0.2936, 0.3722, 0.4284], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lyase_8.gap.json b/pfam_gap_rates/Lyase_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aee9f0b0c80fa097787d26640d60ec2b13f74637
--- /dev/null
+++ b/pfam_gap_rates/Lyase_8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LysE.gap.json b/pfam_gap_rates/LysE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de8051400e9245f07c114b61e6e3dbb422542b3a
--- /dev/null
+++ b/pfam_gap_rates/LysE.gap.json
@@ -0,0 +1 @@
+{"family": "LysE", "n_seqs": 4024, "length": 202, "gap_rates": [0.8809642147117296, 0.41302186878727637, 0.12624254473161034, 0.06262425447316103, 0.04572564612326044, 0.03429423459244533, 0.030815109343936383, 0.02982107355864811, 0.02982107355864811, 0.029572564612326043, 0.028578528827037774, 0.02808151093439364, 0.026341948310139165, 0.025347912524850896, 0.02286282306163022, 0.022614314115308152, 0.022365805168986085, 0.02186878727634195, 0.0352882703777336, 0.023111332007952286, 0.022614314115308152, 0.02062624254473161, 0.13817097415506957, 0.12997017892644136, 0.020377733598409543, 0.019135188866799206, 0.019135188866799206, 0.018141153081510934, 0.018141153081510934, 0.018389662027833, 0.01739562624254473, 0.01665009940357853, 0.016898608349900597, 0.016898608349900597, 0.016153081510934395, 0.016153081510934395, 0.01665009940357853, 0.016401590457256462, 0.015407554671968192, 0.015656063618290257, 0.01341948310139165, 0.013667992047713717, 0.013916500994035786, 0.013916500994035786, 0.013916500994035786, 0.013916500994035786, 0.018389662027833, 0.014165009940357853, 0.013916500994035786, 0.01341948310139165, 0.013667992047713717, 0.014662027833001988, 0.014662027833001988, 0.11754473161033797, 0.028578528827037774, 0.02360834990059642, 0.013916500994035786, 0.013667992047713717, 0.012673956262425448, 0.012922465208747515, 0.013170974155069582, 0.010685884691848906, 0.010188866799204771, 0.009443339960238568, 0.0091948310139165, 0.009443339960238568, 0.009443339960238568, 0.009443339960238568, 0.009691848906560637, 0.009940357852882704, 0.009940357852882704, 0.010685884691848906, 0.009940357852882704, 0.009940357852882704, 0.010437375745526839, 0.010934393638170975, 0.011928429423459244, 0.011679920477137177, 0.012176938369781311, 0.013170974155069582, 0.01441351888667992, 0.015159045725646123, 0.014662027833001988, 0.012673956262425448, 0.013170974155069582, 0.0360337972166998, 0.09517892644135188, 0.05541749502982107, 0.040755467196819085, 0.9465705765407555, 0.937624254473161, 0.03578528827037773, 0.06709741550695825, 0.08225646123260437, 0.13046719681908547, 0.7025347912524851, 0.8613320079522863, 0.9321570576540755, 0.9035785288270378, 0.8024353876739563, 0.6021371769383698, 0.349155069582505, 0.1824055666003976, 0.13643141153081512, 0.10561630218687873, 0.06560636182902585, 0.027335984095427434, 0.010934393638170975, 0.011182902584493042, 0.010437375745526839, 0.010188866799204771, 0.010188866799204771, 0.009443339960238568, 0.0091948310139165, 0.0091948310139165, 0.008946322067594433, 0.008946322067594433, 0.01441351888667992, 0.0091948310139165, 0.009443339960238568, 0.009940357852882704, 0.02186878727634195, 0.02186878727634195, 0.011679920477137177, 0.010685884691848906, 0.011679920477137177, 0.01242544731610338, 0.011679920477137177, 0.011679920477137177, 0.013667992047713717, 0.014165009940357853, 0.01341948310139165, 0.013667992047713717, 0.014165009940357853, 0.2691351888667992, 0.5126739562624254, 0.8817097415506958, 0.3205765407554672, 0.07678926441351888, 0.041749502982107355, 0.027335984095427434, 0.022614314115308152, 0.022365805168986085, 0.021123260437375745, 0.027087475149105367, 0.02385685884691849, 0.023359840954274354, 0.022614314115308152, 0.04498011928429423, 0.031560636182902585, 0.022614314115308152, 0.020377733598409543, 0.021123260437375745, 0.022117296222664017, 0.02162027833001988, 0.02162027833001988, 0.022614314115308152, 0.025347912524850896, 0.025596421471172963, 0.022117296222664017, 0.02286282306163022, 0.026341948310139165, 0.027087475149105367, 0.026590457256461232, 0.027087475149105367, 0.026590457256461232, 0.02509940357852883, 0.024353876739562623, 0.02460238568588469, 0.025596421471172963, 0.02808151093439364, 0.02882703777335984, 0.027087475149105367, 0.026590457256461232, 0.028330019880715707, 0.030069582504970178, 0.03106361829025845, 0.0628727634194831, 0.11978131212723658, 0.08474155069582505, 0.8571073558648111, 0.16625248508946322, 0.03702783300198807, 0.029572564612326043, 0.02882703777335984, 0.028330019880715707, 0.028330019880715707, 0.02882703777335984, 0.030069582504970178, 0.03180914512922465, 0.03305168986083499, 0.03827037773359841, 0.042992047713717695, 0.07082504970178927, 0.09045725646123261, 0.09691848906560636, 0.10909542743538768, 0.14935387673956263, 0.1901093439363817, 0.25024850894632206, 0.41525844930417494, 0.7947316103379721], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LysM.gap.json b/pfam_gap_rates/LysM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41af1c2adf92736e68ee461a9ddb741083c50176
--- /dev/null
+++ b/pfam_gap_rates/LysM.gap.json
@@ -0,0 +1 @@
+{"family": "LysM", "n_seqs": 5000, "length": 50, "gap_rates": [0.1916, 0.0988, 0.0646, 0.0438, 0.0246, 0.0176, 0.0116, 0.0088, 0.0064, 0.004, 0.0034, 0.003, 0.002, 0.0012, 0.0012, 0.0014, 0.827, 0.84, 0.8128, 0.0012, 0.0028, 0.0032, 0.019, 0.0102, 0.0034, 0.0026, 0.0034, 0.0044, 0.0054, 0.0056, 0.9208, 0.6538, 0.0232, 0.0294, 0.0374, 0.043, 0.0676, 0.0636, 0.9272, 0.4588, 0.0614, 0.0654, 0.0684, 0.0716, 0.08, 0.0856, 0.0944, 0.1252, 0.1986, 0.4426], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LytTR.gap.json b/pfam_gap_rates/LytTR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce173e51ac6196754c84f53a796212062421aadf
--- /dev/null
+++ b/pfam_gap_rates/LytTR.gap.json
@@ -0,0 +1 @@
+{"family": "LytTR", "n_seqs": 4475, "length": 101, "gap_rates": [0.595977653631285, 0.3856983240223464, 0.2046927374301676, 0.10145251396648045, 0.06368715083798883, 0.05072625698324022, 0.04357541899441341, 0.033072625698324025, 0.02770949720670391, 0.021899441340782123, 0.018324022346368714, 0.016312849162011173, 0.01452513966480447, 0.014301675977653631, 0.014078212290502793, 0.013184357541899441, 0.012960893854748603, 0.012513966480446927, 0.012290502793296089, 0.012067039106145252, 0.0111731843575419, 0.010726256983240224, 0.010279329608938547, 0.010502793296089385, 0.010502793296089385, 0.9253631284916201, 0.7030167597765363, 0.0111731843575419, 0.008938547486033519, 0.008268156424581006, 0.007374301675977654, 0.007150837988826816, 0.006480446927374301, 0.006256983240223463, 0.005810055865921788, 0.00558659217877095, 0.005139664804469274, 0.005139664804469274, 0.004916201117318436, 0.0046927374301675975, 0.004469273743016759, 0.004469273743016759, 0.0046927374301675975, 0.019217877094972066, 0.04335195530726257, 0.2382122905027933, 0.9318435754189944, 0.005139664804469274, 0.004022346368715084, 0.002905027932960894, 0.0022346368715083797, 0.002905027932960894, 0.003798882681564246, 0.003798882681564246, 0.003575418994413408, 0.003798882681564246, 0.003575418994413408, 0.003575418994413408, 0.0033519553072625698, 0.003575418994413408, 0.003575418994413408, 0.003575418994413408, 0.003575418994413408, 0.004245810055865922, 0.004245810055865922, 0.004916201117318436, 0.004469273743016759, 0.0046927374301675975, 0.23307262569832402, 0.24603351955307262, 0.5414525139664804, 0.4981005586592179, 0.5177653631284916, 0.15307262569832403, 0.128268156424581, 0.02547486033519553, 0.015418994413407822, 0.01743016759776536, 0.01698324022346369, 0.01899441340782123, 0.16402234636871507, 0.8650279329608939, 0.6983240223463687, 0.021229050279329607, 0.021899441340782123, 0.022793296089385476, 0.023687150837988828, 0.024581005586592177, 0.025251396648044693, 0.028156424581005587, 0.029497206703910615, 0.031508379888268156, 0.03597765363128492, 0.04446927374301676, 0.05184357541899441, 0.0670391061452514, 0.0846927374301676, 0.1336312849162011, 0.18078212290502793, 0.30145251396648043, 0.4694972067039106], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MARVEL.gap.json b/pfam_gap_rates/MARVEL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85fb6bd3d8c74dcd7832be06ea92cb82ed538277
--- /dev/null
+++ b/pfam_gap_rates/MARVEL.gap.json
@@ -0,0 +1 @@
+{"family": "MARVEL", "n_seqs": 1176, "length": 214, "gap_rates": [0.8282312925170068, 0.6479591836734694, 0.5722789115646258, 0.560374149659864, 0.5255102040816326, 0.32908163265306123, 0.22534013605442177, 0.18197278911564627, 0.16666666666666666, 0.16071428571428573, 0.14285714285714285, 0.12755102040816327, 0.12159863945578231, 0.10374149659863946, 0.058673469387755105, 0.055272108843537414, 0.05442176870748299, 0.05272108843537415, 0.05187074829931973, 0.05187074829931973, 0.04931972789115646, 0.04931972789115646, 0.047619047619047616, 0.047619047619047616, 0.04846938775510204, 0.047619047619047616, 0.04931972789115646, 0.04846938775510204, 0.4965986394557823, 0.6972789115646258, 0.7210884353741497, 0.7491496598639455, 0.8341836734693877, 0.8494897959183674, 0.8545918367346939, 0.8571428571428571, 0.8630952380952381, 0.8673469387755102, 0.8724489795918368, 0.8784013605442177, 0.8809523809523809, 0.8886054421768708, 0.8886054421768708, 0.8886054421768708, 0.8962585034013606, 0.8971088435374149, 0.9030612244897959, 0.9132653061224489, 0.9226190476190477, 0.9294217687074829, 0.9379251700680272, 0.9251700680272109, 0.9158163265306123, 0.9081632653061225, 0.8988095238095238, 0.8971088435374149, 0.891156462585034, 0.8886054421768708, 0.8886054421768708, 0.8877551020408163, 0.8792517006802721, 0.8767006802721088, 0.8681972789115646, 0.8647959183673469, 0.8622448979591837, 0.8554421768707483, 0.8528911564625851, 0.8443877551020408, 0.7721088435374149, 0.7346938775510204, 0.7125850340136054, 0.6539115646258503, 0.4906462585034014, 0.48554421768707484, 0.45918367346938777, 0.40476190476190477, 0.32568027210884354, 0.22193877551020408, 0.09183673469387756, 0.07738095238095238, 0.07227891156462585, 0.04336734693877551, 0.0391156462585034, 0.03571428571428571, 0.025510204081632654, 0.0195578231292517, 0.01870748299319728, 0.017857142857142856, 0.01445578231292517, 0.012755102040816327, 0.011904761904761904, 0.011904761904761904, 0.011054421768707483, 0.012755102040816327, 0.011054421768707483, 0.011904761904761904, 0.012755102040816327, 0.016156462585034014, 0.016156462585034014, 0.012755102040816327, 0.011904761904761904, 0.012755102040816327, 0.011904761904761904, 0.013605442176870748, 0.013605442176870748, 0.1564625850340136, 0.18027210884353742, 0.30357142857142855, 0.34183673469387754, 0.7738095238095238, 0.8188775510204082, 0.5433673469387755, 0.33163265306122447, 0.28316326530612246, 0.1292517006802721, 0.1054421768707483, 0.08503401360544217, 0.07653061224489796, 0.015306122448979591, 0.012755102040816327, 0.00935374149659864, 0.008503401360544218, 0.007653061224489796, 0.005952380952380952, 0.002551020408163265, 0.002551020408163265, 0.0017006802721088435, 0.002551020408163265, 0.004251700680272109, 0.003401360544217687, 0.003401360544217687, 0.004251700680272109, 0.004251700680272109, 0.004251700680272109, 0.00510204081632653, 0.005952380952380952, 0.00510204081632653, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.006802721088435374, 0.007653061224489796, 0.007653061224489796, 0.011904761904761904, 0.013605442176870748, 0.013605442176870748, 0.01445578231292517, 0.4897959183673469, 0.45918367346938777, 0.4651360544217687, 0.5212585034013606, 0.6641156462585034, 0.7049319727891157, 0.7440476190476191, 0.7967687074829932, 0.8324829931972789, 0.8477891156462585, 0.8928571428571429, 0.9183673469387755, 0.9251700680272109, 0.9413265306122449, 0.935374149659864, 0.9217687074829932, 0.8979591836734694, 0.8681972789115646, 0.8375850340136054, 0.814625850340136, 0.7857142857142857, 0.7261904761904762, 0.6870748299319728, 0.6632653061224489, 0.5450680272108843, 0.5841836734693877, 0.7814625850340136, 0.9328231292517006, 0.875, 0.6658163265306123, 0.5153061224489796, 0.429421768707483, 0.32142857142857145, 0.2534013605442177, 0.2193877551020408, 0.21598639455782312, 0.179421768707483, 0.15731292517006804, 0.125, 0.12755102040816327, 0.12159863945578231, 0.07227891156462585, 0.04931972789115646, 0.047619047619047616, 0.04591836734693878, 0.0467687074829932, 0.045068027210884355, 0.0467687074829932, 0.0467687074829932, 0.050170068027210885, 0.05272108843537415, 0.05272108843537415, 0.05272108843537415, 0.05357142857142857, 0.05442176870748299, 0.05782312925170068, 0.06547619047619048, 0.06802721088435375, 0.06972789115646258, 0.07482993197278912, 0.08418367346938775, 0.09863945578231292, 0.1522108843537415, 0.2227891156462585, 0.5348639455782312], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MAT1.gap.json b/pfam_gap_rates/MAT1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14d3d421887da43f9f73620c20a576e259838c3b
--- /dev/null
+++ b/pfam_gap_rates/MAT1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MDMPI_N.gap.json b/pfam_gap_rates/MDMPI_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82501c2dc8522f6272a90b65f0e5e789372054d4
--- /dev/null
+++ b/pfam_gap_rates/MDMPI_N.gap.json
@@ -0,0 +1 @@
+{"family": "MDMPI_N", "n_seqs": 1250, "length": 153, "gap_rates": [0.8336, 0.5808, 0.4056, 0.3096, 0.2416, 0.1968, 0.1688, 0.1384, 0.112, 0.0936, 0.0656, 0.0504, 0.0464, 0.044, 0.0432, 0.048, 0.0464, 0.0608, 0.0432, 0.0184, 0.0168, 0.016, 0.0168, 0.0144, 0.0384, 0.8328, 0.012, 0.0096, 0.0104, 0.0104, 0.0088, 0.0088, 0.0088, 0.0088, 0.0088, 0.008, 0.008, 0.0088, 0.0088, 0.0088, 0.0104, 0.0144, 0.0176, 0.0168, 0.0216, 0.0232, 0.0232, 0.0224, 0.024, 0.0712, 0.0704, 0.0752, 0.248, 0.4416, 0.2784, 0.2456, 0.28, 0.2696, 0.3648, 0.3768, 0.4104, 0.3952, 0.5416, 0.4648, 0.4776, 0.5264, 0.6088, 0.5456, 0.5336, 0.5296, 0.508, 0.6064, 0.8176, 0.8656, 0.9048, 0.9264, 0.936, 0.9168, 0.8792, 0.8392, 0.808, 0.108, 0.0984, 0.0848, 0.076, 0.072, 0.0672, 0.0704, 0.0688, 0.0688, 0.0696, 0.072, 0.0688, 0.072, 0.072, 0.0848, 0.0776, 0.0744, 0.0744, 0.0728, 0.0736, 0.076, 0.088, 0.1016, 0.1056, 0.1152, 0.1288, 0.1416, 0.1456, 0.152, 0.1592, 0.1648, 0.1904, 0.2736, 0.2624, 0.212, 0.2, 0.1984, 0.2032, 0.2048, 0.2048, 0.2096, 0.2152, 0.7816, 0.4328, 0.4088, 0.32, 0.2304, 0.2168, 0.216, 0.2192, 0.2272, 0.4304, 0.432, 0.4096, 0.8312, 0.2152, 0.2112, 0.212, 0.2112, 0.2112, 0.212, 0.2136, 0.2128, 0.2136, 0.2144, 0.2152, 0.2144, 0.2152, 0.2184, 0.2192, 0.2296, 0.52], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MEDS.gap.json b/pfam_gap_rates/MEDS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63cd2ae818dc6a6c3675a5910c142317881a38b4
--- /dev/null
+++ b/pfam_gap_rates/MEDS.gap.json
@@ -0,0 +1 @@
+{"family": "MEDS", "n_seqs": 235, "length": 168, "gap_rates": [0.6170212765957447, 0.13191489361702127, 0.1276595744680851, 0.12340425531914893, 0.10638297872340426, 0.09361702127659574, 0.07659574468085106, 0.06382978723404255, 0.059574468085106386, 0.05531914893617021, 0.05531914893617021, 0.05531914893617021, 0.05106382978723404, 0.05106382978723404, 0.05106382978723404, 0.05106382978723404, 0.05106382978723404, 0.04680851063829787, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.029787234042553193, 0.02127659574468085, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.8851063829787233, 0.11063829787234042, 0.07234042553191489, 0.03829787234042553, 0.03404255319148936, 0.02553191489361702, 0.01702127659574468, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.20425531914893616, 0.2, 0.23404255319148937, 0.07234042553191489, 0.059574468085106386, 0.14042553191489363, 0.0851063829787234, 0.06808510638297872, 0.06382978723404255, 0.20425531914893616, 0.1829787234042553, 0.16595744680851063, 0.13191489361702127, 0.1276595744680851, 0.32340425531914896, 0.2936170212765957, 0.2851063829787234, 0.2680851063829787, 0.26382978723404255, 0.25957446808510637, 0.28085106382978725, 0.2680851063829787, 0.2680851063829787, 0.28085106382978725, 0.2765957446808511, 0.9276595744680851, 0.9319148936170213, 0.8978723404255319, 0.11063829787234042, 0.08936170212765958, 0.06808510638297872, 0.05106382978723404, 0.05106382978723404, 0.04680851063829787, 0.05106382978723404, 0.04680851063829787, 0.09787234042553192, 0.08085106382978724, 0.06808510638297872, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.01276595744680851, 0.059574468085106386, 0.10638297872340426, 0.9446808510638298, 0.19148936170212766, 0.1276595744680851, 0.25957446808510637, 0.13617021276595745, 0.0425531914893617, 0.01702127659574468, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.9191489361702128, 0.029787234042553193, 0.03404255319148936, 0.03404255319148936, 0.02127659574468085, 0.02127659574468085, 0.14042553191489363, 0.4595744680851064, 0.04680851063829787, 0.03404255319148936, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.8808510638297873, 0.0425531914893617, 0.03829787234042553, 0.03829787234042553, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.03404255319148936, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.03404255319148936, 0.03404255319148936, 0.05531914893617021, 0.05106382978723404, 0.06382978723404255, 0.06382978723404255, 0.06382978723404255, 0.06382978723404255, 0.06808510638297872, 0.0851063829787234, 0.09361702127659574, 0.09787234042553192, 0.10638297872340426, 0.11063829787234042, 0.11063829787234042, 0.1276595744680851, 0.14042553191489363, 0.14893617021276595, 0.37446808510638296], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MEKHLA.gap.json b/pfam_gap_rates/MEKHLA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc9c1266528d1a43bd65569ad48545edea6550ed
--- /dev/null
+++ b/pfam_gap_rates/MEKHLA.gap.json
@@ -0,0 +1 @@
+{"family": "MEKHLA", "n_seqs": 259, "length": 153, "gap_rates": [0.25096525096525096, 0.13513513513513514, 0.09652509652509653, 0.07335907335907337, 0.06177606177606178, 0.05405405405405406, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.44787644787644787, 0.22393822393822393, 0.13127413127413126, 0.10810810810810811, 0.9382239382239382, 0.9034749034749034, 0.07722007722007722, 0.05791505791505792, 0.04247104247104247, 0.03861003861003861, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.9382239382239382, 0.023166023166023165, 0.023166023166023165, 0.019305019305019305, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.011583011583011582, 0.015444015444015444, 0.015444015444015444, 0.019305019305019305, 0.023166023166023165, 0.8764478764478765, 0.8648648648648649, 0.015444015444015444, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.015444015444015444, 0.011583011583011582, 0.011583011583011582, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.019305019305019305, 0.023166023166023165, 0.023166023166023165, 0.9459459459459459, 0.9227799227799228, 0.03088803088803089, 0.03088803088803089, 0.03088803088803089, 0.03474903474903475, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.023166023166023165, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.03088803088803089, 0.03088803088803089, 0.03088803088803089, 0.05019305019305019, 0.05019305019305019, 0.05405405405405406, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.05019305019305019, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.04633204633204633, 0.05019305019305019, 0.05019305019305019, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.9266409266409267, 0.05405405405405406, 0.05405405405405406, 0.9498069498069498, 0.9420849420849421, 0.06177606177606178, 0.06177606177606178, 0.06177606177606178, 0.06177606177606178, 0.06177606177606178, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05791505791505792, 0.07335907335907337, 0.09266409266409266, 0.11583011583011583, 0.14285714285714285, 0.3783783783783784], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MIF4G_like.gap.json b/pfam_gap_rates/MIF4G_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..487e92c563d424f0a2088c2d727d1dfad9806d3f
--- /dev/null
+++ b/pfam_gap_rates/MIF4G_like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MIT.gap.json b/pfam_gap_rates/MIT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3cd8a98f2fe03e818c22603e56913ad7b8a5aef
--- /dev/null
+++ b/pfam_gap_rates/MIT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MP.gap.json b/pfam_gap_rates/MP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ac8012896151d709676d8620b0ea97e4d43f48e
--- /dev/null
+++ b/pfam_gap_rates/MP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mannitol_dh_C.gap.json b/pfam_gap_rates/Mannitol_dh_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e363667096edf53641b97bbc6995832914655cd
--- /dev/null
+++ b/pfam_gap_rates/Mannitol_dh_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mannosyl_trans3.gap.json b/pfam_gap_rates/Mannosyl_trans3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9db2ea99bef25ecc253c765367af57743195968
--- /dev/null
+++ b/pfam_gap_rates/Mannosyl_trans3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MatC_N.gap.json b/pfam_gap_rates/MatC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4dd1292590366c3e82f684f85568c571b52a0aaf
--- /dev/null
+++ b/pfam_gap_rates/MatC_N.gap.json
@@ -0,0 +1 @@
+{"family": "MatC_N", "n_seqs": 123, "length": 149, "gap_rates": [0.5284552845528455, 0.5040650406504065, 0.42276422764227645, 0.2764227642276423, 0.16260162601626016, 0.13008130081300814, 0.10569105691056911, 0.08943089430894309, 0.08943089430894309, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.056910569105691054, 0.04878048780487805, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.024390243902439025, 0.04065040650406504, 0.032520325203252036, 0.07317073170731707, 0.04878048780487805, 0.13008130081300814, 0.024390243902439025, 0.016260162601626018, 0.024390243902439025, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.032520325203252036, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.016260162601626018, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.04065040650406504, 0.032520325203252036, 0.032520325203252036, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.016260162601626018, 0.04878048780487805, 0.032520325203252036, 0.056910569105691054, 0.04878048780487805, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.024390243902439025, 0.04065040650406504, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.04065040650406504, 0.056910569105691054, 0.04878048780487805, 0.056910569105691054, 0.06504065040650407, 0.10569105691056911, 0.14634146341463414, 0.37398373983739835], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MbtH.gap.json b/pfam_gap_rates/MbtH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52b962baeec18b2ffbdc29a6debc86c42f1fdd50
--- /dev/null
+++ b/pfam_gap_rates/MbtH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med17.gap.json b/pfam_gap_rates/Med17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..efa425e8006e29c45e7e058932ecc9fa9925aa04
--- /dev/null
+++ b/pfam_gap_rates/Med17.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med21.gap.json b/pfam_gap_rates/Med21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1acb6b8b4157666e9fe85f4231194d1420409c2b
--- /dev/null
+++ b/pfam_gap_rates/Med21.gap.json
@@ -0,0 +1 @@
+{"family": "Med21", "n_seqs": 280, "length": 171, "gap_rates": [0.24285714285714285, 0.4142857142857143, 0.17142857142857143, 0.17142857142857143, 0.16785714285714284, 0.16785714285714284, 0.16785714285714284, 0.16785714285714284, 0.16785714285714284, 0.16785714285714284, 0.16785714285714284, 0.16428571428571428, 0.16428571428571428, 0.16071428571428573, 0.15357142857142858, 0.15357142857142858, 0.15357142857142858, 0.15357142857142858, 0.1392857142857143, 0.1357142857142857, 0.1357142857142857, 0.1357142857142857, 0.13214285714285715, 0.13214285714285715, 0.13214285714285715, 0.13214285714285715, 0.13214285714285715, 0.13214285714285715, 0.13214285714285715, 0.125, 0.125, 0.12142857142857143, 0.12142857142857143, 0.12142857142857143, 0.12142857142857143, 0.125, 0.20357142857142857, 0.14285714285714285, 0.14285714285714285, 0.15357142857142858, 0.45714285714285713, 0.4607142857142857, 0.425, 0.42142857142857143, 0.4035714285714286, 0.44285714285714284, 0.4607142857142857, 0.6071428571428571, 0.6178571428571429, 0.65, 0.7571428571428571, 0.7464285714285714, 0.7428571428571429, 0.8571428571428571, 0.8642857142857143, 0.8678571428571429, 0.8678571428571429, 0.8785714285714286, 0.8785714285714286, 0.8892857142857142, 0.9071428571428571, 0.9142857142857143, 0.9285714285714286, 0.9357142857142857, 0.9464285714285714, 0.95, 0.95, 0.95, 0.9392857142857143, 0.9357142857142857, 0.9214285714285714, 0.9071428571428571, 0.9071428571428571, 0.8892857142857142, 0.8785714285714286, 0.875, 0.8678571428571429, 0.8678571428571429, 0.8607142857142858, 0.85, 0.8178571428571428, 0.7607142857142857, 0.6821428571428572, 0.6428571428571429, 0.55, 0.48214285714285715, 0.42142857142857143, 0.30357142857142855, 0.26785714285714285, 0.22857142857142856, 0.16785714285714284, 0.13214285714285715, 0.12857142857142856, 0.125, 0.12142857142857143, 0.11785714285714285, 0.10357142857142858, 0.09642857142857143, 0.08571428571428572, 0.08214285714285714, 0.075, 0.06785714285714285, 0.060714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.175, 0.09285714285714286, 0.05714285714285714, 0.06785714285714285, 0.06785714285714285, 0.06785714285714285, 0.075, 0.07142857142857142, 0.07857142857142857, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08928571428571429, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09285714285714286, 0.09642857142857143, 0.1, 0.10357142857142858, 0.11071428571428571, 0.13214285714285715, 0.13214285714285715, 0.1392857142857143, 0.1392857142857143, 0.1392857142857143, 0.1392857142857143, 0.1392857142857143, 0.1392857142857143, 0.1392857142857143, 0.14285714285714285, 0.17142857142857143, 0.21785714285714286, 0.30714285714285716, 0.45, 0.9357142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Med26.gap.json b/pfam_gap_rates/Med26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2b252d2048331f9ef3741a89eac684c2211f8a9
--- /dev/null
+++ b/pfam_gap_rates/Med26.gap.json
@@ -0,0 +1 @@
+{"family": "Med26", "n_seqs": 1342, "length": 55, "gap_rates": [0.7175856929955291, 0.28688524590163933, 0.18479880774962743, 0.14903129657228018, 0.12071535022354694, 0.09910581222056632, 0.08345752608047691, 0.07898658718330849, 0.07078986587183309, 0.1721311475409836, 0.12071535022354694, 0.8859910581222057, 0.04843517138599106, 0.044709388971684055, 0.029806259314456036, 0.8614008941877794, 0.022354694485842028, 0.020119225037257823, 0.01564828614008942, 0.010432190760059613, 0.005961251862891207, 0.004470938897168405, 0.004470938897168405, 0.004470938897168405, 0.004470938897168405, 0.0007451564828614009, 0.0007451564828614009, 0.0, 0.0, 0.0, 0.05886736214605067, 0.10283159463487332, 0.22503725782414308, 0.2757078986587183, 0.27421758569299554, 0.3651266766020864, 0.0007451564828614009, 0.0014903129657228018, 0.0007451564828614009, 0.0014903129657228018, 0.0022354694485842027, 0.0022354694485842027, 0.0022354694485842027, 0.0029806259314456036, 0.005961251862891207, 0.005961251862891207, 0.0067064083457526085, 0.0067064083457526085, 0.00894187779433681, 0.014903129657228018, 0.01788375558867362, 0.02608047690014903, 0.07078986587183309, 0.20044709388971685, 0.45752608047690013], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Med6.gap.json b/pfam_gap_rates/Med6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6662969b646e1dae030dfc80be5533f5a2e74182
--- /dev/null
+++ b/pfam_gap_rates/Med6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Membralin.gap.json b/pfam_gap_rates/Membralin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9562a9a075790648818440e19444b942fe48050c
--- /dev/null
+++ b/pfam_gap_rates/Membralin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltranf_PUA.gap.json b/pfam_gap_rates/Methyltranf_PUA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1b0ab5c67673ef06def3274da0313e1eb27b6a1
--- /dev/null
+++ b/pfam_gap_rates/Methyltranf_PUA.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltranf_PUA", "n_seqs": 481, "length": 57, "gap_rates": [0.5654885654885655, 0.1392931392931393, 0.02702702702702703, 0.010395010395010396, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.002079002079002079, 0.002079002079002079, 0.9459459459459459, 0.9168399168399168, 0.002079002079002079, 0.04365904365904366, 0.25571725571725573, 0.4864864864864865, 0.841995841995842, 0.9293139293139293, 0.9438669438669439, 0.8835758835758836, 0.8024948024948025, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008316008316008316, 0.0, 0.002079002079002079, 0.002079002079002079, 0.002079002079002079, 0.002079002079002079, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.018711018711018712, 0.02702702702702703, 0.04781704781704782, 0.24532224532224534], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_10.gap.json b/pfam_gap_rates/Methyltransf_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5ca2b705dc69393552030c1f8820bd6063866cb
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_11.gap.json b/pfam_gap_rates/Methyltransf_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a91b0cf4fc1a8ed226d39006a7fdf592b2c70590
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_11.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_11", "n_seqs": 5000, "length": 110, "gap_rates": [0.3776, 0.2208, 0.2002, 0.1958, 0.1926, 0.1874, 0.1854, 0.1832, 0.1804, 0.179, 0.179, 0.175, 0.1716, 0.1692, 0.1684, 0.9292, 0.218, 0.2124, 0.1856, 0.8096, 0.9388, 0.6486, 0.2048, 0.1664, 0.1496, 0.1476, 0.1456, 0.1442, 0.1418, 0.1478, 0.1424, 0.1418, 0.1392, 0.1384, 0.1396, 0.1858, 0.1804, 0.1702, 0.1804, 0.1796, 0.1704, 0.1548, 0.15, 0.1514, 0.1718, 0.2388, 0.4716, 0.7316, 0.8954, 0.9412, 0.9234, 0.7946, 0.6156, 0.3224, 0.3104, 0.1908, 0.043, 0.0332, 0.0274, 0.023, 0.02, 0.0144, 0.0208, 0.9042, 0.0166, 0.908, 0.0118, 0.007, 0.0064, 0.0074, 0.022, 0.008, 0.0052, 0.004, 0.0036, 0.0036, 0.004, 0.0038, 0.0048, 0.006, 0.016, 0.014, 0.0136, 0.0146, 0.0144, 0.756, 0.8756, 0.7364, 0.0898, 0.0472, 0.03, 0.0284, 0.0288, 0.0288, 0.0266, 0.0232, 0.0234, 0.0242, 0.0258, 0.0272, 0.0286, 0.0386, 0.0444, 0.0632, 0.0802, 0.0974, 0.105, 0.1242, 0.2194, 0.5502], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_18.gap.json b/pfam_gap_rates/Methyltransf_18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6b5b8aabc95c91c3fba82488c1658b795b98abb
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_18.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_18", "n_seqs": 383, "length": 154, "gap_rates": [0.3524804177545692, 0.19843342036553524, 0.12010443864229765, 0.09921671018276762, 0.08877284595300261, 0.08616187989556136, 0.08093994778067885, 0.07571801566579635, 0.07571801566579635, 0.0731070496083551, 0.06266318537859007, 0.04699738903394256, 0.03655352480417755, 0.08093994778067885, 0.02610966057441253, 0.02610966057441253, 0.9347258485639687, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.031331592689295036, 0.031331592689295036, 0.018276762402088774, 0.02610966057441253, 0.028720626631853787, 0.04177545691906005, 0.02610966057441253, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.013054830287206266, 0.007832898172323759, 0.005221932114882507, 0.005221932114882507, 0.007832898172323759, 0.007832898172323759, 0.007832898172323759, 0.007832898172323759, 0.005221932114882507, 0.007832898172323759, 0.020887728459530026, 0.031331592689295036, 0.04960835509138381, 0.10704960835509138, 0.08093994778067885, 0.02610966057441253, 0.010443864229765013, 0.007832898172323759, 0.007832898172323759, 0.007832898172323759, 0.007832898172323759, 0.007832898172323759, 0.007832898172323759, 0.010443864229765013, 0.018276762402088774, 0.013054830287206266, 0.010443864229765013, 0.010443864229765013, 0.04177545691906005, 0.13315926892950392, 0.0731070496083551, 0.02610966057441253, 0.8798955613577023, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.013054830287206266, 0.028720626631853787, 0.02610966057441253, 0.013054830287206266, 0.015665796344647518, 0.013054830287206266, 0.013054830287206266, 0.013054830287206266, 0.015665796344647518, 0.015665796344647518, 0.9425587467362925, 0.10704960835509138, 0.10443864229765012, 0.0835509138381201, 0.04960835509138381, 0.05483028720626632, 0.09399477806788512, 0.08616187989556136, 0.04960835509138381, 0.04960835509138381, 0.028720626631853787, 0.028720626631853787, 0.031331592689295036, 0.031331592689295036, 0.03655352480417755, 0.04177545691906005, 0.04177545691906005, 0.057441253263707574, 0.06005221932114883, 0.06266318537859007, 0.06266318537859007, 0.06266318537859007, 0.06266318537859007, 0.06527415143603134, 0.06527415143603134, 0.06527415143603134, 0.06527415143603134, 0.06788511749347259, 0.06788511749347259, 0.07049608355091384, 0.06788511749347259, 0.06788511749347259, 0.06788511749347259, 0.06788511749347259, 0.07049608355091384, 0.06788511749347259, 0.07049608355091384, 0.06788511749347259, 0.06788511749347259, 0.0731070496083551, 0.0731070496083551, 0.0783289817232376, 0.0783289817232376, 0.08877284595300261, 0.08877284595300261, 0.09138381201044386, 0.09921671018276762, 0.1409921671018277, 0.23237597911227154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_1N.gap.json b/pfam_gap_rates/Methyltransf_1N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9365f26da7411fd213d0f56157312283f1208aa
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_1N.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_1N", "n_seqs": 650, "length": 92, "gap_rates": [0.8815384615384615, 0.6061538461538462, 0.4323076923076923, 0.36153846153846153, 0.26461538461538464, 0.18, 0.08, 0.038461538461538464, 0.026153846153846153, 0.021538461538461538, 0.016923076923076923, 0.015384615384615385, 0.004615384615384616, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.006153846153846154, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.9461538461538461, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.003076923076923077, 0.004615384615384616, 0.004615384615384616, 0.004615384615384616, 0.006153846153846154, 0.05076923076923077, 0.7184615384615385, 0.7984615384615384, 0.9015384615384615, 0.8307692307692308, 0.76, 0.68, 0.5230769230769231, 0.3415384615384615, 0.2876923076923077, 0.18307692307692308, 0.14615384615384616, 0.12, 0.07230769230769231, 0.05692307692307692, 0.05692307692307692, 0.055384615384615386, 0.04923076923076923, 0.05076923076923077, 0.046153846153846156, 0.72, 0.8492307692307692, 0.9215384615384615, 0.8861538461538462, 0.7584615384615384, 0.676923076923077, 0.5261538461538462, 0.19230769230769232, 0.12153846153846154, 0.038461538461538464, 0.03538461538461538, 0.036923076923076927, 0.036923076923076927, 0.03538461538461538, 0.033846153846153845, 0.03076923076923077, 0.03538461538461538, 0.036923076923076927, 0.04153846153846154, 0.043076923076923075, 0.04461538461538461, 0.047692307692307694, 0.05076923076923077, 0.05076923076923077, 0.052307692307692305, 0.06307692307692307, 0.08307692307692308, 0.9415384615384615, 0.936923076923077, 0.8861538461538462, 0.12, 0.12461538461538461, 0.14153846153846153, 0.16615384615384615, 0.20923076923076922, 0.23076923076923078, 0.35384615384615387, 0.7861538461538462], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_2.gap.json b/pfam_gap_rates/Methyltransf_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0da1ede07fad7256aeba8bdf3b1ad3595694906d
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_3.gap.json b/pfam_gap_rates/Methyltransf_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dda79d1cb533cef437c5036fc77c8c4726defbd5
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_PK.gap.json b/pfam_gap_rates/Methyltransf_PK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..84ef5b553b9bdb98f9c37fc8fe62f67f3a79ea3d
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_PK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mga.gap.json b/pfam_gap_rates/Mga.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e0e91ae52f451890a2da2c3894c7c1de08e08ed
--- /dev/null
+++ b/pfam_gap_rates/Mga.gap.json
@@ -0,0 +1 @@
+{"family": "Mga", "n_seqs": 979, "length": 91, "gap_rates": [0.9468845760980592, 0.8907048008171604, 0.8273748723186926, 0.7834525025536262, 0.7303370786516854, 0.6843718079673136, 0.6527068437180796, 0.6292134831460674, 0.5893769152196119, 0.5546475995914198, 0.5280898876404494, 0.48927477017364657, 0.3840653728294178, 0.3023493360572012, 0.24004085801838612, 0.21756894790602654, 0.195097037793667, 0.17058222676200205, 0.14504596527068436, 0.09805924412665985, 0.08478038815117467, 0.07048008171603677, 0.05720122574055159, 0.04800817160367722, 0.04085801838610827, 0.9499489274770173, 0.8232890704800817, 0.06230847803881512, 0.02247191011235955, 0.017364657814096015, 0.013278855975485188, 0.010214504596527068, 0.009193054136874362, 0.008171603677221655, 0.0040858018386108275, 0.0030643513789581204, 0.0030643513789581204, 0.0020429009193054137, 0.0030643513789581204, 0.0020429009193054137, 0.0010214504596527069, 0.0010214504596527069, 0.0020429009193054137, 0.0010214504596527069, 0.0010214504596527069, 0.0010214504596527069, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0010214504596527069, 0.0010214504596527069, 0.0010214504596527069, 0.0030643513789581204, 0.005107252298263534, 0.007150153217568948, 0.011235955056179775, 0.013278855975485188, 0.01634320735444331, 0.3258426966292135, 0.5056179775280899, 0.2665985699693565, 0.09499489274770173, 0.0735444330949949, 0.02247191011235955, 0.024514811031664963, 0.033707865168539325, 0.03779366700715015, 0.03779366700715015, 0.03983656792645557, 0.04085801838610827, 0.0449438202247191, 0.049029622063329927, 0.05209397344228805, 0.05822267620020429, 0.06332992849846783, 0.07150153217568948, 0.11133810010214505, 0.16036772216547499, 0.24514811031664965, 0.33094994892747703, 0.432073544433095, 0.5168539325842697, 0.7497446373850868], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mis14.gap.json b/pfam_gap_rates/Mis14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..486f9387d40f212dceedf24af50035bca763f35a
--- /dev/null
+++ b/pfam_gap_rates/Mis14.gap.json
@@ -0,0 +1 @@
+{"family": "Mis14", "n_seqs": 120, "length": 174, "gap_rates": [0.8333333333333334, 0.44166666666666665, 0.23333333333333334, 0.14166666666666666, 0.125, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.11666666666666667, 0.15, 0.75, 0.8333333333333334, 0.8583333333333333, 0.875, 0.8833333333333333, 0.9083333333333333, 0.925, 0.9416666666666667, 0.95, 0.95, 0.95, 0.95, 0.9333333333333333, 0.9083333333333333, 0.9, 0.8833333333333333, 0.8583333333333333, 0.8416666666666667, 0.8166666666666667, 0.5583333333333333, 0.15833333333333333, 0.44166666666666665, 0.4083333333333333, 0.375, 0.325, 0.31666666666666665, 0.275, 0.26666666666666666, 0.3333333333333333, 0.2916666666666667, 0.275, 0.26666666666666666, 0.21666666666666667, 0.16666666666666666, 0.15, 0.06666666666666667, 0.05, 0.058333333333333334, 0.7916666666666666, 0.875, 0.95, 0.9166666666666666, 0.8166666666666667, 0.7083333333333334, 0.03333333333333333, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.09166666666666666, 0.06666666666666667, 0.03333333333333333, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.0, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008333333333333333, 0.016666666666666666, 0.016666666666666666, 0.008333333333333333, 0.016666666666666666, 0.016666666666666666, 0.03333333333333333, 0.041666666666666664, 0.05, 0.058333333333333334, 0.058333333333333334, 0.06666666666666667, 0.06666666666666667, 0.475, 0.43333333333333335, 0.4, 0.1, 0.08333333333333333, 0.08333333333333333, 0.10833333333333334, 0.10833333333333334, 0.125, 0.125, 0.7166666666666667, 0.7416666666666667, 0.8166666666666667, 0.85, 0.9, 0.9333333333333333, 0.9416666666666667, 0.95, 0.9416666666666667, 0.9333333333333333, 0.9083333333333333, 0.875, 0.8416666666666667, 0.8, 0.7416666666666667, 0.6583333333333333, 0.5166666666666667, 0.45, 0.275, 0.21666666666666667, 0.175, 0.16666666666666666, 0.18333333333333332, 0.2, 0.20833333333333334, 0.21666666666666667, 0.23333333333333334, 0.23333333333333334, 0.225, 0.225, 0.225, 0.225, 0.23333333333333334, 0.25, 0.26666666666666666, 0.275, 0.275, 0.275, 0.3, 0.30833333333333335, 0.31666666666666665, 0.31666666666666665, 0.31666666666666665, 0.325, 0.325, 0.3333333333333333, 0.35833333333333334, 0.35833333333333334, 0.38333333333333336, 0.4083333333333333, 0.425, 0.4583333333333333, 0.5083333333333333, 0.5666666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mit_KHE1.gap.json b/pfam_gap_rates/Mit_KHE1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21c87ed332a2352d4140b9c4e141d31a01effbb0
--- /dev/null
+++ b/pfam_gap_rates/Mit_KHE1.gap.json
@@ -0,0 +1 @@
+{"family": "Mit_KHE1", "n_seqs": 182, "length": 249, "gap_rates": [0.1978021978021978, 0.13736263736263737, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.8076923076923077, 0.8076923076923077, 0.8296703296703297, 0.8626373626373627, 0.9010989010989011, 0.9065934065934066, 0.8846153846153846, 0.8461538461538461, 0.8131868131868132, 0.8076923076923077, 0.8076923076923077, 0.2692307692307692, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.12637362637362637, 0.12637362637362637, 0.12637362637362637, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.9175824175824175, 0.6428571428571429, 0.5989010989010989, 0.9340659340659341, 0.5769230769230769, 0.4945054945054945, 0.521978021978022, 0.521978021978022, 0.5164835164835165, 0.44505494505494503, 0.34065934065934067, 0.3076923076923077, 0.2802197802197802, 0.25824175824175827, 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\ No newline at end of file
diff --git a/pfam_gap_rates/MlaC.gap.json b/pfam_gap_rates/MlaC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe5b7b50e939d442cd0c685999adf3a50df8b78e
--- /dev/null
+++ b/pfam_gap_rates/MlaC.gap.json
@@ -0,0 +1 @@
+{"family": "MlaC", "n_seqs": 657, "length": 174, "gap_rates": [0.8751902587519026, 0.4946727549467275, 0.3242009132420091, 0.243531202435312, 0.1933028919330289, 0.1582952815829528, 0.1400304414003044, 0.1339421613394216, 0.1263318112633181, 0.1141552511415525, 0.1080669710806697, 0.0989345509893455, 0.0928462709284627, 0.0928462709284627, 0.0943683409436834, 0.0928462709284627, 0.1141552511415525, 0.2237442922374429, 0.3576864535768645, 0.3242009132420091, 0.273972602739726, 0.2100456621004566, 0.0350076103500761, 0.0243531202435312, 0.0197869101978691, 0.0197869101978691, 0.0182648401826484, 0.0167427701674277, 0.015220700152207, 0.015220700152207, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0121765601217656, 0.0121765601217656, 0.0121765601217656, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.9178082191780822, 0.0106544901065449, 0.0091324200913242, 0.0091324200913242, 0.015220700152207, 0.0136986301369863, 0.0121765601217656, 0.0121765601217656, 0.0121765601217656, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.0091324200913242, 0.0091324200913242, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.015220700152207, 0.0167427701674277, 0.0121765601217656, 0.0121765601217656, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0106544901065449, 0.0106544901065449, 0.0091324200913242, 0.0228310502283105, 0.1537290715372907, 0.2602739726027397, 0.7656012176560122, 0.2617960426179604, 0.0578386605783866, 0.0136986301369863, 0.0106544901065449, 0.0091324200913242, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.015220700152207, 0.91324200913242, 0.2450532724505327, 0.8949771689497716, 0.0106544901065449, 0.0106544901065449, 0.0091324200913242, 0.0060882800608828, 0.0060882800608828, 0.0060882800608828, 0.0060882800608828, 0.0060882800608828, 0.0060882800608828, 0.0258751902587519, 0.0182648401826484, 0.0167427701674277, 0.8599695585996956, 0.7442922374429224, 0.0106544901065449, 0.0091324200913242, 0.0121765601217656, 0.0091324200913242, 0.0060882800608828, 0.0060882800608828, 0.0060882800608828, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.0076103500761035, 0.9452054794520548, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.0106544901065449, 0.015220700152207, 0.015220700152207, 0.0167427701674277, 0.0213089802130898, 0.0289193302891933, 0.786910197869102, 0.7579908675799086, 0.0289193302891933, 0.0350076103500761, 0.0365296803652968, 0.0380517503805175, 0.0395738203957382, 0.0395738203957382, 0.0410958904109589, 0.0426179604261796, 0.0487062404870624, 0.1552511415525114, 0.7686453576864536], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MlrC_C.gap.json b/pfam_gap_rates/MlrC_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb1c1d9c9d26b93b07fc4757a988d78e35c7f12d
--- /dev/null
+++ b/pfam_gap_rates/MlrC_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MoaC.gap.json b/pfam_gap_rates/MoaC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9361353de7fba0b9246fca57bde4c2fcf6de68e5
--- /dev/null
+++ b/pfam_gap_rates/MoaC.gap.json
@@ -0,0 +1 @@
+{"family": "MoaC", "n_seqs": 1543, "length": 143, "gap_rates": [0.03888528839922229, 0.03305249513933895, 0.031756318859364877, 0.031756318859364877, 0.031108230719377836, 0.02916396629941672, 0.02916396629941672, 0.027867790019442645, 0.027867790019442645, 0.027867790019442645, 0.027867790019442645, 0.027219701879455604, 0.026571613739468567, 0.026571613739468567, 0.026571613739468567, 0.026571613739468567, 0.026571613739468567, 0.026571613739468567, 0.026571613739468567, 0.026571613739468567, 0.026571613739468567, 0.02462734931950745, 0.023979261179520414, 0.02462734931950745, 0.023331173039533377, 0.02268308489954634, 0.0220349967595593, 0.02138690861957226, 0.020738820479585224, 0.019442644199611146, 0.019442644199611146, 0.027219701879455604, 0.02462734931950745, 0.018794556059624108, 0.016850291639662993, 0.016850291639662993, 0.016850291639662993, 0.017498379779650033, 0.016850291639662993, 0.016850291639662993, 0.016850291639662993, 0.016850291639662993, 0.016850291639662993, 0.016850291639662993, 0.016850291639662993, 0.016202203499675955, 0.016202203499675955, 0.016202203499675955, 0.016202203499675955, 0.013609850939727802, 0.012313674659753726, 0.012313674659753726, 0.012313674659753726, 0.012313674659753726, 0.012313674659753726, 0.012961762799740765, 0.012961762799740765, 0.012961762799740765, 0.012961762799740765, 0.012961762799740765, 0.011665586519766688, 0.011665586519766688, 0.011665586519766688, 0.012313674659753726, 0.012313674659753726, 0.012313674659753726, 0.011665586519766688, 0.012313674659753726, 0.012313674659753726, 0.012313674659753726, 0.011665586519766688, 0.011665586519766688, 0.011665586519766688, 0.012313674659753726, 0.010369410239792612, 0.013609850939727802, 0.016202203499675955, 0.27090084251458196, 0.8768632534024627, 0.9170447180816591, 0.9345430978613092, 0.9468567725210628, 0.9390797148412184, 0.9254698639014906, 0.8846403110823072, 0.36033700583279327, 0.016850291639662993, 0.013609850939727802, 0.012961762799740765, 0.009073233959818535, 0.009073233959818535, 0.009073233959818535, 0.009073233959818535, 0.009073233959818535, 0.009073233959818535, 0.008425145819831496, 0.007777057679844459, 0.008425145819831496, 0.007777057679844459, 0.007777057679844459, 0.008425145819831496, 0.008425145819831496, 0.008425145819831496, 0.008425145819831496, 0.008425145819831496, 0.007777057679844459, 0.007777057679844459, 0.008425145819831496, 0.008425145819831496, 0.008425145819831496, 0.008425145819831496, 0.008425145819831496, 0.007777057679844459, 0.007777057679844459, 0.007777057679844459, 0.007777057679844459, 0.007777057679844459, 0.008425145819831496, 0.009073233959818535, 0.009721322099805573, 0.009721322099805573, 0.009721322099805573, 0.009721322099805573, 0.009721322099805573, 0.009721322099805573, 0.010369410239792612, 0.011665586519766688, 0.012313674659753726, 0.012313674659753726, 0.015554115359688918, 0.016850291639662993, 0.016850291639662993, 0.01814646791963707, 0.017498379779650033, 0.018794556059624108, 0.018794556059624108, 0.018794556059624108, 0.019442644199611146, 0.020090732339598186, 0.02138690861957226, 0.02268308489954634, 0.04277381723914452, 0.06480881399870382], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mpv17_PMP22.gap.json b/pfam_gap_rates/Mpv17_PMP22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c23a067bb03b041b0a54b680edff5e6a5160b03b
--- /dev/null
+++ b/pfam_gap_rates/Mpv17_PMP22.gap.json
@@ -0,0 +1 @@
+{"family": "Mpv17_PMP22", "n_seqs": 1473, "length": 62, "gap_rates": [0.748133061778683, 0.3937542430414121, 0.2837746096401901, 0.2606924643584521, 0.21656483367277665, 0.17311608961303462, 0.1826205023761032, 0.208418194161575, 0.1425661914460285, 0.10183299389002037, 0.058384249830278345, 0.05227427019687712, 0.0461642905634759, 0.041412084181941616, 0.03665987780040733, 0.032586558044806514, 0.028513238289205704, 0.025797691785471828, 0.021045485403937542, 0.021045485403937542, 0.021045485403937542, 0.02172437202987101, 0.014256619144602852, 0.013577732518669382, 0.012219959266802444, 0.011541072640868975, 0.009504412763068567, 0.0047522063815342835, 0.0033944331296673455, 0.002036659877800407, 0.0013577732518669382, 0.0013577732518669382, 0.0013577732518669382, 0.0013577732518669382, 0.0013577732518669382, 0.0027155465037338763, 0.0047522063815342835, 0.005431093007467753, 0.010183299389002037, 0.008825526137135099, 0.005431093007467753, 0.006788866259334691, 0.006788866259334691, 0.006788866259334691, 0.010183299389002037, 0.012898845892735914, 0.014256619144602852, 0.015614392396469789, 0.020366598778004074, 0.02308214528173795, 0.025797691785471828, 0.027155465037338764, 0.029192124915139173, 0.02987101154107264, 0.03326544467073999, 0.03665987780040733, 0.04005431093007468, 0.04548540393754243, 0.05023761031907671, 0.059063136456211814, 0.07128309572301425, 0.2905634758995248], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MreC.gap.json b/pfam_gap_rates/MreC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b492fdd43718224c6fcaea85434fa97492254906
--- /dev/null
+++ b/pfam_gap_rates/MreC.gap.json
@@ -0,0 +1 @@
+{"family": "MreC", "n_seqs": 1760, "length": 160, "gap_rates": [0.3528409090909091, 0.26988636363636365, 0.23352272727272727, 0.20113636363636364, 0.1721590909090909, 0.14488636363636365, 0.12954545454545455, 0.11761363636363636, 0.0971590909090909, 0.07840909090909091, 0.05795454545454545, 0.04659090909090909, 0.042045454545454546, 0.03806818181818182, 0.036931818181818184, 0.03636363636363636, 0.036931818181818184, 0.038636363636363635, 0.03920454545454546, 0.0375, 0.035227272727272725, 0.031818181818181815, 0.029545454545454545, 0.028409090909090908, 0.02727272727272727, 0.026136363636363635, 0.026136363636363635, 0.024431818181818183, 0.024431818181818183, 0.024431818181818183, 0.024431818181818183, 0.025, 0.033522727272727273, 0.024431818181818183, 0.8607954545454546, 0.024431818181818183, 0.023863636363636365, 0.023295454545454546, 0.023295454545454546, 0.02215909090909091, 0.02159090909090909, 0.02159090909090909, 0.02159090909090909, 0.02159090909090909, 0.021022727272727273, 0.020454545454545454, 0.020454545454545454, 0.021022727272727273, 0.020454545454545454, 0.020454545454545454, 0.019318181818181818, 0.017613636363636363, 0.01818181818181818, 0.016477272727272726, 0.011931818181818182, 0.9215909090909091, 0.9136363636363637, 0.010795454545454546, 0.017045454545454544, 0.01818181818181818, 0.011363636363636364, 0.9426136363636364, 0.9392045454545455, 0.010795454545454546, 0.011363636363636364, 0.010795454545454546, 0.02727272727272727, 0.014772727272727272, 0.014772727272727272, 0.8806818181818182, 0.03465909090909091, 0.9221590909090909, 0.8488636363636364, 0.023863636363636365, 0.017613636363636363, 0.02784090909090909, 0.021022727272727273, 0.013636363636363636, 0.013068181818181817, 0.010795454545454546, 0.011363636363636364, 0.013636363636363636, 0.8494318181818182, 0.8210227272727273, 0.5136363636363637, 0.4278409090909091, 0.11931818181818182, 0.04375, 0.01875, 0.013636363636363636, 0.014772727272727272, 0.013636363636363636, 0.013636363636363636, 0.013068181818181817, 0.017045454545454544, 0.04375, 0.014204545454545454, 0.019886363636363636, 0.0125, 0.019886363636363636, 0.9022727272727272, 0.011931818181818182, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.008522727272727272, 0.007954545454545454, 0.007954545454545454, 0.00909090909090909, 0.00909090909090909, 0.008522727272727272, 0.009659090909090909, 0.010227272727272727, 0.010795454545454546, 0.042045454545454546, 0.04147727272727273, 0.035227272727272725, 0.04715909090909091, 0.036931818181818184, 0.031818181818181815, 0.03125, 0.023295454545454546, 0.0125, 0.011931818181818182, 0.013068181818181817, 0.011931818181818182, 0.013636363636363636, 0.014772727272727272, 0.014772727272727272, 0.021022727272727273, 0.0375, 0.04147727272727273, 0.05397727272727273, 0.07443181818181818, 0.08238636363636363, 0.08409090909090909, 0.12897727272727272, 0.0971590909090909, 0.07784090909090909, 0.06136363636363636, 0.04261363636363636, 0.029545454545454545, 0.025, 0.02556818181818182, 0.02556818181818182, 0.026704545454545453, 0.028409090909090908, 0.028409090909090908, 0.029545454545454545, 0.03125, 0.033522727272727273, 0.03465909090909091, 0.03806818181818182, 0.040340909090909094, 0.042045454545454546, 0.04943181818181818, 0.06079545454545455, 0.075, 0.16363636363636364, 0.9073863636363636], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MspA.gap.json b/pfam_gap_rates/MspA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7867e08ed7a1ddbacc0fdb524dbdf09197ea9d91
--- /dev/null
+++ b/pfam_gap_rates/MspA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mucin2_WxxW.gap.json b/pfam_gap_rates/Mucin2_WxxW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6f3fec47ece4f8fe23dff1666fbdb87ea0a2cec
--- /dev/null
+++ b/pfam_gap_rates/Mucin2_WxxW.gap.json
@@ -0,0 +1 @@
+{"family": "Mucin2_WxxW", "n_seqs": 414, "length": 101, "gap_rates": [0.38405797101449274, 0.14009661835748793, 0.10869565217391304, 0.10628019323671498, 0.10628019323671498, 0.10628019323671498, 0.10628019323671498, 0.10628019323671498, 0.10628019323671498, 0.10628019323671498, 0.10628019323671498, 0.10628019323671498, 0.4975845410628019, 0.9492753623188406, 0.6159420289855072, 0.4492753623188406, 0.10386473429951691, 0.10869565217391304, 0.10869565217391304, 0.9251207729468599, 0.0966183574879227, 0.09903381642512077, 0.09903381642512077, 0.0966183574879227, 0.10144927536231885, 0.11835748792270531, 0.12318840579710146, 0.13285024154589373, 0.1280193236714976, 0.6980676328502415, 0.1280193236714976, 0.12077294685990338, 0.27053140096618356, 0.2632850241545894, 0.12318840579710146, 0.9371980676328503, 0.07971014492753623, 0.07729468599033816, 0.0748792270531401, 0.07246376811594203, 0.0748792270531401, 0.8695652173913043, 0.8647342995169082, 0.07729468599033816, 0.06763285024154589, 0.06763285024154589, 0.07004830917874397, 0.07004830917874397, 0.07004830917874397, 0.10386473429951691, 0.14492753623188406, 0.4855072463768116, 0.15217391304347827, 0.7367149758454107, 0.9082125603864735, 0.5917874396135265, 0.1280193236714976, 0.16908212560386474, 0.12560386473429952, 0.11835748792270531, 0.09178743961352658, 0.08454106280193237, 0.07971014492753623, 0.07729468599033816, 0.0748792270531401, 0.06521739130434782, 0.8695652173913043, 0.05555555555555555, 0.050724637681159424, 0.8357487922705314, 0.04830917874396135, 0.04589371980676329, 0.06038647342995169, 0.050724637681159424, 0.043478260869565216, 0.043478260869565216, 0.04589371980676329, 0.03864734299516908, 0.03864734299516908, 0.03864734299516908, 0.03864734299516908, 0.043478260869565216, 0.04589371980676329, 0.043478260869565216, 0.1497584541062802, 0.09178743961352658, 0.06521739130434782, 0.7246376811594203, 0.8913043478260869, 0.47101449275362317, 0.04106280193236715, 0.04106280193236715, 0.04589371980676329, 0.04830917874396135, 0.050724637681159424, 0.050724637681159424, 0.05555555555555555, 0.06280193236714976, 0.06763285024154589, 0.07971014492753623, 0.0821256038647343], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Myelin_PLP.gap.json b/pfam_gap_rates/Myelin_PLP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f94b47b2b653c8ebf46526b984cf6c4216ac571d
--- /dev/null
+++ b/pfam_gap_rates/Myelin_PLP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NADH5_C.gap.json b/pfam_gap_rates/NADH5_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bff79f828a0f5d119010bd311a3d3a57a754e1e
--- /dev/null
+++ b/pfam_gap_rates/NADH5_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NADH_4Fe-4S.gap.json b/pfam_gap_rates/NADH_4Fe-4S.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..956f950752dffd7d9af44ba8e96cc2908790eb68
--- /dev/null
+++ b/pfam_gap_rates/NADH_4Fe-4S.gap.json
@@ -0,0 +1 @@
+{"family": "NADH_4Fe-4S", "n_seqs": 2427, "length": 85, "gap_rates": [0.8067573135558302, 0.28224145035022663, 0.10918829831067162, 0.049443757725587144, 0.03172641120725175, 0.026782035434693038, 0.022249690976514216, 0.02018953440461475, 0.018953440461475072, 0.017717346518335394, 0.012360939431396786, 0.010712814173877214, 0.010300782859497322, 0.010300782859497322, 0.009888751545117428, 0.009888751545117428, 0.009476720230737536, 0.009064688916357644, 0.009064688916357644, 0.009064688916357644, 0.009064688916357644, 0.009064688916357644, 0.009064688916357644, 0.009064688916357644, 0.009064688916357644, 0.00865265760197775, 0.00865265760197775, 0.007004532344458179, 0.006592501030078286, 0.006180469715698393, 0.006180469715698393, 0.006180469715698393, 0.006592501030078286, 0.007828594973217964, 0.018129377832715288, 0.021837659662134322, 0.023485784919653894, 0.024721878862793572, 0.027194066749072928, 0.03172641120725175, 0.03419859909353111, 0.07334157395962093, 0.060156571899464356, 0.0403790688092295, 0.03378656777915121, 0.025133910177173466, 0.016481252575195716, 0.006592501030078286, 0.006180469715698393, 0.006180469715698393, 0.006180469715698393, 0.006180469715698393, 0.006592501030078286, 0.006592501030078286, 0.006592501030078286, 0.006180469715698393, 0.007828594973217964, 0.013597033374536464, 0.006180469715698393, 0.006180469715698393, 0.006180469715698393, 0.006180469715698393, 0.006180469715698393, 0.006180469715698393, 0.006592501030078286, 0.007004532344458179, 0.007004532344458179, 0.007004532344458179, 0.007004532344458179, 0.007004532344458179, 0.007004532344458179, 0.007828594973217964, 0.008240626287597858, 0.008240626287597858, 0.009888751545117428, 0.010712814173877214, 0.018129377832715288, 0.02018953440461475, 0.020601565718994644, 0.022249690976514216, 0.030490317264112072, 0.0407911001236094, 0.10094767202307375, 0.23897816234033786, 0.5566543057272353], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_2.gap.json b/pfam_gap_rates/NAD_binding_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb8db7840671f443ad920cf05cc30763ba10a803
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_2.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_binding_2", "n_seqs": 5000, "length": 182, "gap_rates": [0.3764, 0.1062, 0.0898, 0.0844, 0.0838, 0.0824, 0.0808, 0.0792, 0.079, 0.0488, 0.0478, 0.0474, 0.0474, 0.0386, 0.0376, 0.0374, 0.0372, 0.037, 0.948, 0.0366, 0.039, 0.0422, 0.038, 0.0356, 0.0344, 0.033, 0.0326, 0.0328, 0.0326, 0.0324, 0.0348, 0.0344, 0.0554, 0.0474, 0.0468, 0.0472, 0.0472, 0.055, 0.057, 0.0596, 0.0726, 0.0652, 0.0598, 0.698, 0.73, 0.915, 0.9498, 0.9318, 0.7982, 0.7174, 0.6518, 0.0544, 0.0594, 0.0506, 0.0416, 0.04, 0.0372, 0.0364, 0.0354, 0.0404, 0.0374, 0.038, 0.0384, 0.0372, 0.0444, 0.691, 0.6934, 0.6866, 0.0336, 0.032, 0.0318, 0.0312, 0.0314, 0.0294, 0.0284, 0.0286, 0.0298, 0.0518, 0.0372, 0.0324, 0.0328, 0.0354, 0.033, 0.0342, 0.0318, 0.0314, 0.0328, 0.536, 0.9256, 0.564, 0.502, 0.0412, 0.0418, 0.04, 0.0428, 0.0398, 0.0518, 0.033, 0.0326, 0.0328, 0.0328, 0.0324, 0.033, 0.0358, 0.0358, 0.0352, 0.0352, 0.0352, 0.035, 0.0354, 0.0362, 0.036, 0.0358, 0.0362, 0.0366, 0.0362, 0.0362, 0.0374, 0.0388, 0.0478, 0.049, 0.0494, 0.045, 0.0412, 0.9482, 0.04, 0.0392, 0.0382, 0.0376, 0.0378, 0.038, 0.0392, 0.0406, 0.0448, 0.0476, 0.0486, 0.049, 0.051, 0.0504, 0.0532, 0.055, 0.056, 0.0564, 0.0564, 0.3858, 0.0578, 0.0562, 0.0562, 0.0566, 0.057, 0.0578, 0.0612, 0.0616, 0.0638, 0.068, 0.071, 0.0708, 0.072, 0.072, 0.0724, 0.0728, 0.0742, 0.0772, 0.0844, 0.087, 0.0938, 0.1204, 0.1508, 0.83, 0.8362, 0.8384, 0.9472, 0.8362, 0.836, 0.829, 0.2318, 0.2734, 0.312, 0.6576, 0.5066, 0.814, 0.6218], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_6.gap.json b/pfam_gap_rates/NAD_binding_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e4a08e51fde926923b996481598525f30a36d19
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_6.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_binding_6", "n_seqs": 2149, "length": 339, "gap_rates": [0.41554211261051655, 0.27175430432759423, 0.1814797580269893, 0.15355979525360633, 0.05072126570497906, 0.04792926942764077, 0.04746393671475105, 0.04699860400186133, 0.04653327128897161, 0.04560260586319218, 0.045137273150302464, 0.045137273150302464, 0.045137273150302464, 0.045137273150302464, 0.045137273150302464, 0.043275942298743604, 0.043275942298743604, 0.043275942298743604, 0.043275942298743604, 0.042810609585853886, 0.043275942298743604, 0.04467194043741275, 0.042810609585853886, 0.04234527687296417, 0.043275942298743604, 0.044206607724523034, 0.04699860400186133, 0.051186598417868774, 0.5816658911121452, 0.7319683573755235, 0.7729176361098186, 0.7952536063285249, 0.811540251279665, 0.8236389018147976, 0.8385295486272685, 0.8613308515588646, 0.8906468124709167, 0.9190321079571894, 0.9250814332247557, 0.9297347603536529, 0.9339227547696604, 0.9395067473243369, 0.9446254071661238, 0.9469520707305723, 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\ No newline at end of file
diff --git a/pfam_gap_rates/NAS.gap.json b/pfam_gap_rates/NAS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0cd55ec8bc40bc649c85cf05a35627c779c3845
--- /dev/null
+++ b/pfam_gap_rates/NAS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NDT80_PhoG.gap.json b/pfam_gap_rates/NDT80_PhoG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bbd58966abb4176bd74d6adc6a4cbfbaf7741fd4
--- /dev/null
+++ b/pfam_gap_rates/NDT80_PhoG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NDUFA12.gap.json b/pfam_gap_rates/NDUFA12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..838160be02b27d78d11dffa8ebc2b182ef9db8a3
--- /dev/null
+++ b/pfam_gap_rates/NDUFA12.gap.json
@@ -0,0 +1 @@
+{"family": "NDUFA12", "n_seqs": 709, "length": 125, "gap_rates": [0.41889985895627646, 0.2623413258110014, 0.04372355430183357, 0.031029619181946404, 0.028208744710860368, 0.028208744710860368, 0.02679830747531735, 0.023977433004231313, 0.022566995768688293, 0.021156558533145273, 0.021156558533145273, 0.021156558533145273, 0.019746121297602257, 0.019746121297602257, 0.019746121297602257, 0.019746121297602257, 0.018335684062059238, 0.9294781382228491, 0.9139633286318759, 0.07475317348377997, 0.6826516220028209, 0.11001410437235543, 0.2016925246826516, 0.08039492242595205, 0.7009873060648801, 0.8674188998589563, 0.9294781382228491, 0.7771509167842031, 0.6389280677009873, 0.06205923836389281, 0.018335684062059238, 0.014104372355430184, 0.014104372355430184, 0.014104372355430184, 0.014104372355430184, 0.018335684062059238, 0.018335684062059238, 0.019746121297602257, 0.29619181946403383, 0.0380818053596615, 0.10296191819464035, 0.03526093088857546, 0.7108603667136812, 0.8772919605077574, 0.9308885754583921, 0.9167842031029619, 0.7433004231311706, 0.5472496473906912, 0.02538787023977433, 0.02538787023977433, 0.021156558533145273, 0.021156558533145273, 0.018335684062059238, 0.01692524682651622, 0.018335684062059238, 0.019746121297602257, 0.022566995768688293, 0.01692524682651622, 0.018335684062059238, 0.018335684062059238, 0.01692524682651622, 0.01692524682651622, 0.01692524682651622, 0.01692524682651622, 0.01692524682651622, 0.01692524682651622, 0.01692524682651622, 0.01692524682651622, 0.015514809590973202, 0.015514809590973202, 0.02679830747531735, 0.09167842031029619, 0.07334273624823695, 0.37376586741889983, 0.09732016925246827, 0.07898448519040903, 0.7926657263751763, 0.7729196050775741, 0.1001410437235543, 0.11847672778561354, 0.1311706629055007, 0.1325811001410437, 0.13540197461212977, 0.153737658674189, 0.153737658674189, 0.16502115655853314, 0.16643159379407615, 0.1763046544428773, 0.9153737658674189, 0.2016925246826516, 0.21297602256699577, 0.22002820874471085, 0.2397743300423131, 0.24964739069111425, 0.2651622002820874, 0.2736248236953456, 0.28913963328631875, 0.29760225669957685, 0.3215796897038082, 0.3300423131170663, 0.3328631875881523, 0.3455571227080395, 0.3554301833568406, 0.36812411847672777, 0.9308885754583921, 0.9351198871650211, 0.8942172073342737, 0.37799717912552894, 0.4132581100141044, 0.37940761636107195, 0.6741889985895627, 0.6755994358251057, 0.7179125528913963, 0.8110014104372355, 0.8307475317348378, 0.7418899858956276, 0.7066290550070522, 0.6741889985895627, 0.6741889985895627, 0.382228490832158, 0.383638928067701, 0.385049365303244, 0.38787023977433005, 0.4033850493653032, 0.4203102961918195], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NDUFB10.gap.json b/pfam_gap_rates/NDUFB10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99ef28c252cf1dd928253fab70425d78a5aff055
--- /dev/null
+++ b/pfam_gap_rates/NDUFB10.gap.json
@@ -0,0 +1 @@
+{"family": "NDUFB10", "n_seqs": 107, "length": 131, "gap_rates": [0.35514018691588783, 0.32710280373831774, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.29906542056074764, 0.29906542056074764, 0.45794392523364486, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.6074766355140186, 0.5514018691588785, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.24299065420560748, 0.2336448598130841, 0.21495327102803738, 0.205607476635514, 0.205607476635514, 0.205607476635514, 0.205607476635514, 0.205607476635514, 0.19626168224299065, 0.17757009345794392, 0.17757009345794392, 0.16822429906542055, 0.16822429906542055, 0.16822429906542055, 0.1588785046728972, 0.1308411214953271, 0.056074766355140186, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.9158878504672897, 0.9158878504672897, 0.9158878504672897, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.06542056074766354, 0.04672897196261682, 0.056074766355140186, 0.07476635514018691, 0.07476635514018691, 0.2616822429906542, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.102803738317757, 0.12149532710280374, 0.16822429906542055, 0.24299065420560748, 0.2523364485981308, 0.2523364485981308, 0.27102803738317754, 0.27102803738317754, 0.2803738317757009, 0.2803738317757009, 0.29906542056074764, 0.29906542056074764, 0.29906542056074764, 0.29906542056074764, 0.29906542056074764, 0.29906542056074764, 0.29906542056074764, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.308411214953271, 0.3925233644859813], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NIR_SIR_ferr.gap.json b/pfam_gap_rates/NIR_SIR_ferr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2fba469a0434fa597559ce23ce82bd185e958b07
--- /dev/null
+++ b/pfam_gap_rates/NIR_SIR_ferr.gap.json
@@ -0,0 +1 @@
+{"family": "NIR_SIR_ferr", "n_seqs": 4060, "length": 78, "gap_rates": [0.8704433497536945, 0.7448275862068966, 0.48300492610837437, 0.4169950738916256, 0.35541871921182266, 0.47413793103448276, 0.2874384236453202, 0.48645320197044334, 0.4753694581280788, 0.26108374384236455, 0.03669950738916256, 0.026847290640394088, 0.022413793103448276, 0.0187192118226601, 0.01650246305418719, 0.013300492610837438, 0.010098522167487686, 0.03300492610837438, 0.9366995073891625, 0.9431034482758621, 0.9433497536945813, 0.9366995073891625, 0.9364532019704433, 0.011330049261083743, 0.0041871921182266006, 0.0032019704433497538, 0.8837438423645321, 0.0034482758620689655, 0.0034482758620689655, 0.002955665024630542, 0.9027093596059114, 0.903448275862069, 0.9024630541871921, 0.002955665024630542, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0022167487684729066, 0.0019704433497536944, 0.0019704433497536944, 0.0017241379310344827, 0.0017241379310344827, 0.008620689655172414, 0.007881773399014778, 0.005665024630541872, 0.004679802955665025, 0.21995073891625616, 0.0041871921182266006, 0.00270935960591133, 0.003694581280788177, 0.003694581280788177, 0.003694581280788177, 0.003940886699507389, 0.004433497536945813, 0.0041871921182266006, 0.004433497536945813, 0.004433497536945813, 0.00541871921182266, 0.005172413793103448, 0.00541871921182266, 0.0064039408866995075, 0.010591133004926109, 0.008374384236453201, 0.010591133004926109, 0.01600985221674877, 0.02413793103448276, 0.030295566502463053, 0.0332512315270936, 0.034975369458128076, 0.037684729064039406, 0.04334975369458128, 0.04876847290640394, 0.06330049261083744, 0.08078817733990148, 0.13448275862068965, 0.24310344827586206, 0.46551724137931033, 0.8711822660098523], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NIT.gap.json b/pfam_gap_rates/NIT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..807ddd2ec2051c46c6a9f45080da3b77689f0495
--- /dev/null
+++ b/pfam_gap_rates/NIT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NMT.gap.json b/pfam_gap_rates/NMT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff528da51a0fe325640714aae26a99c2a0497762
--- /dev/null
+++ b/pfam_gap_rates/NMT.gap.json
@@ -0,0 +1 @@
+{"family": "NMT", "n_seqs": 415, "length": 160, "gap_rates": [0.727710843373494, 0.4891566265060241, 0.46987951807228917, 0.4650602409638554, 0.491566265060241, 0.3204819277108434, 0.1686746987951807, 0.15180722891566265, 0.12771084337349398, 0.1108433734939759, 0.10843373493975904, 0.10361445783132531, 0.10120481927710843, 0.09879518072289156, 0.09156626506024096, 0.0891566265060241, 0.0891566265060241, 0.08433734939759036, 0.08433734939759036, 0.0819277108433735, 0.0819277108433735, 0.07951807228915662, 0.0746987951807229, 0.0746987951807229, 0.0746987951807229, 0.0746987951807229, 0.0746987951807229, 0.0746987951807229, 0.10120481927710843, 0.10361445783132531, 0.09156626506024096, 0.09156626506024096, 0.08433734939759036, 0.060240963855421686, 0.060240963855421686, 0.05783132530120482, 0.05783132530120482, 0.05542168674698795, 0.05542168674698795, 0.05542168674698795, 0.05542168674698795, 0.05542168674698795, 0.05542168674698795, 0.05542168674698795, 0.05542168674698795, 0.05542168674698795, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.06265060240963856, 0.06506024096385542, 0.06746987951807229, 0.06265060240963856, 0.06265060240963856, 0.05783132530120482, 0.05783132530120482, 0.05542168674698795, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.06265060240963856, 0.05542168674698795, 0.06265060240963856, 0.060240963855421686, 0.06506024096385542, 0.06987951807228916, 0.06506024096385542, 0.06506024096385542, 0.06265060240963856, 0.05301204819277108, 0.05542168674698795, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.060240963855421686, 0.060240963855421686, 0.07228915662650602, 0.13012048192771083, 0.10843373493975904, 0.06265060240963856, 0.06265060240963856, 0.06265060240963856, 0.06506024096385542, 0.06746987951807229, 0.06987951807228916, 0.06987951807228916, 0.06987951807228916, 0.06987951807228916, 0.06987951807228916, 0.06746987951807229, 0.06746987951807229, 0.06746987951807229, 0.06746987951807229, 0.06746987951807229, 0.06746987951807229, 0.06746987951807229, 0.06746987951807229, 0.06506024096385542, 0.06987951807228916, 0.07228915662650602, 0.07228915662650602, 0.06746987951807229, 0.060240963855421686, 0.060240963855421686, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05783132530120482, 0.05542168674698795, 0.05542168674698795, 0.05301204819277108, 0.05301204819277108, 0.05301204819277108, 0.05301204819277108, 0.05301204819277108, 0.05301204819277108, 0.05542168674698795, 0.05542168674698795, 0.05542168674698795, 0.05301204819277108, 0.05542168674698795, 0.05542168674698795, 0.05542168674698795, 0.05783132530120482, 0.060240963855421686, 0.06265060240963856, 0.06265060240963856, 0.06265060240963856, 0.06265060240963856, 0.06265060240963856, 0.06265060240963856, 0.06265060240963856, 0.06506024096385542, 0.06506024096385542, 0.06506024096385542, 0.06506024096385542, 0.06506024096385542, 0.06506024096385542, 0.06746987951807229, 0.06746987951807229, 0.06746987951807229, 0.06987951807228916, 0.07710843373493977, 0.08433734939759036, 0.08433734939759036, 0.08674698795180723, 0.08674698795180723, 0.08674698795180723, 0.09397590361445783, 0.09879518072289156, 0.1614457831325301, 0.27228915662650605], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NMT1.gap.json b/pfam_gap_rates/NMT1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..261ead6963ab65578117cf7dd75b98dc7c6ba4bc
--- /dev/null
+++ b/pfam_gap_rates/NMT1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NMT1_2.gap.json b/pfam_gap_rates/NMT1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1dcde2cfdb3265a5791d6cbd5274f0dbdebcd41b
--- /dev/null
+++ b/pfam_gap_rates/NMT1_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NMT_C.gap.json b/pfam_gap_rates/NMT_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55a209243cc9204059e86503171bf160ade856d9
--- /dev/null
+++ b/pfam_gap_rates/NMT_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NOG1.gap.json b/pfam_gap_rates/NOG1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b271507bc9ffccc9776ff0a7c2bfc2a7b4550eb4
--- /dev/null
+++ b/pfam_gap_rates/NOG1.gap.json
@@ -0,0 +1 @@
+{"family": "NOG1", "n_seqs": 461, "length": 58, "gap_rates": [0.3080260303687636, 0.019522776572668113, 0.015184381778741865, 0.013015184381778741, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.008676789587852495, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.010845986984815618, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.010845986984815618, 0.008676789587852495, 0.015184381778741865, 0.015184381778741865, 0.006507592190889371, 0.008676789587852495, 0.0021691973969631237, 0.004338394793926247, 0.004338394793926247, 0.006507592190889371, 0.008676789587852495, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.008676789587852495, 0.008676789587852495, 0.013015184381778741, 0.015184381778741865, 0.10629067245119306, 0.01735357917570499, 0.01735357917570499, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.013015184381778741, 0.013015184381778741, 0.013015184381778741, 0.019522776572668113, 0.03036876355748373], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NPA.gap.json b/pfam_gap_rates/NPA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8580380deda435e59f37c4e1323be7e3fefe383
--- /dev/null
+++ b/pfam_gap_rates/NPA.gap.json
@@ -0,0 +1 @@
+{"family": "NPA", "n_seqs": 189, "length": 125, "gap_rates": [0.656084656084656, 0.5343915343915344, 0.4444444444444444, 0.41798941798941797, 0.3862433862433862, 0.36507936507936506, 0.35978835978835977, 0.31746031746031744, 0.23809523809523808, 0.164021164021164, 0.14814814814814814, 0.10582010582010581, 0.08994708994708994, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07407407407407407, 0.07407407407407407, 0.06878306878306878, 0.9153439153439153, 0.05291005291005291, 0.05291005291005291, 0.05291005291005291, 0.0582010582010582, 0.0582010582010582, 0.06349206349206349, 0.0582010582010582, 0.0582010582010582, 0.35978835978835977, 0.05291005291005291, 0.047619047619047616, 0.047619047619047616, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.026455026455026454, 0.026455026455026454, 0.026455026455026454, 0.026455026455026454, 0.031746031746031744, 0.031746031746031744, 0.042328042328042326, 0.042328042328042326, 0.026455026455026454, 0.026455026455026454, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.037037037037037035, 0.031746031746031744, 0.037037037037037035, 0.031746031746031744, 0.031746031746031744, 0.026455026455026454, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.037037037037037035, 0.037037037037037035, 0.042328042328042326, 0.042328042328042326, 0.042328042328042326, 0.042328042328042326, 0.047619047619047616, 0.047619047619047616, 0.05291005291005291, 0.05291005291005291, 0.05291005291005291, 0.05291005291005291, 0.042328042328042326, 0.873015873015873, 0.25925925925925924, 0.1111111111111111, 0.05291005291005291, 0.05291005291005291, 0.0582010582010582, 0.06349206349206349, 0.06878306878306878, 0.06349206349206349, 0.08465608465608465, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.08465608465608465, 0.12169312169312169, 0.10052910052910052, 0.10052910052910052, 0.2275132275132275, 0.15343915343915343, 0.15343915343915343, 0.15343915343915343, 0.14814814814814814, 0.08994708994708994, 0.08994708994708994, 0.2962962962962963, 0.08994708994708994, 0.09523809523809523, 0.10052910052910052, 0.10052910052910052, 0.1164021164021164, 0.1164021164021164, 0.1164021164021164, 0.1164021164021164, 0.12698412698412698, 0.14814814814814814, 0.17989417989417988, 0.25396825396825395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NPL4.gap.json b/pfam_gap_rates/NPL4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b36501d219a52b294434d3e120fefba141f2195
--- /dev/null
+++ b/pfam_gap_rates/NPL4.gap.json
@@ -0,0 +1 @@
+{"family": "NPL4", "n_seqs": 374, "length": 347, "gap_rates": [0.2914438502673797, 0.23796791443850268, 0.20588235294117646, 0.19518716577540107, 0.19518716577540107, 0.19518716577540107, 0.19518716577540107, 0.19518716577540107, 0.1925133689839572, 0.1925133689839572, 0.18983957219251338, 0.1925133689839572, 0.1925133689839572, 0.22459893048128343, 0.26737967914438504, 0.3074866310160428, 0.3048128342245989, 0.2994652406417112, 0.28342245989304815, 0.20855614973262032, 0.16042780748663102, 0.13101604278074866, 0.12834224598930483, 0.12834224598930483, 0.12834224598930483, 0.12834224598930483, 0.12834224598930483, 0.12834224598930483, 0.12834224598930483, 0.12566844919786097, 0.12566844919786097, 0.12299465240641712, 0.12299465240641712, 0.12299465240641712, 0.12299465240641712, 0.12834224598930483, 0.12834224598930483, 0.12834224598930483, 0.12834224598930483, 0.12834224598930483, 0.7620320855614974, 0.12299465240641712, 0.12566844919786097, 0.12566844919786097, 0.8957219251336899, 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\ No newline at end of file
diff --git a/pfam_gap_rates/NT5C.gap.json b/pfam_gap_rates/NT5C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19b915380d9ead4d21b60aa9187e827c77d2b4a3
--- /dev/null
+++ b/pfam_gap_rates/NT5C.gap.json
@@ -0,0 +1 @@
+{"family": "NT5C", "n_seqs": 471, "length": 232, "gap_rates": [0.921443736730361, 0.772823779193206, 0.673036093418259, 0.24203821656050956, 0.19745222929936307, 0.17197452229299362, 0.17197452229299362, 0.16560509554140126, 0.16348195329087048, 0.16348195329087048, 0.16348195329087048, 0.1613588110403397, 0.1613588110403397, 0.18259023354564755, 0.18259023354564755, 0.18471337579617833, 0.1910828025477707, 0.1910828025477707, 0.1613588110403397, 0.15498938428874734, 0.15286624203821655, 0.15498938428874734, 0.1592356687898089, 0.16985138004246284, 0.1740976645435244, 0.16560509554140126, 0.16560509554140126, 0.16348195329087048, 0.16348195329087048, 0.16560509554140126, 0.851380042462845, 0.9384288747346072, 0.7622080679405521, 0.15711252653927812, 0.1613588110403397, 0.15711252653927812, 0.15711252653927812, 0.15286624203821655, 0.14861995753715498, 0.14861995753715498, 0.22929936305732485, 0.940552016985138, 0.7261146496815286, 0.18471337579617833, 0.1613588110403397, 0.15286624203821655, 0.15711252653927812, 0.15498938428874734, 0.15498938428874734, 0.6985138004246284, 0.9150743099787686, 0.5902335456475584, 0.29936305732484075, 0.22505307855626328, 0.17834394904458598, 0.16348195329087048, 0.15711252653927812, 0.1464968152866242, 0.12314225053078556, 0.12526539278131635, 0.11677282377919321, 0.1337579617834395, 0.11889596602972399, 0.11889596602972399, 0.9469214437367304, 0.8450106157112527, 0.1040339702760085, 0.09978768577494693, 0.09978768577494693, 0.06794055201698514, 0.055201698513800426, 0.050955414012738856, 0.04670912951167728, 0.044585987261146494, 0.040339702760084924, 0.03821656050955414, 0.03184713375796178, 0.036093418259023353, 0.03821656050955414, 0.03184713375796178, 0.027600849256900213, 0.025477707006369428, 0.02335456475583864, 0.02335456475583864, 0.02335456475583864, 0.02335456475583864, 0.02335456475583864, 0.02335456475583864, 0.025477707006369428, 0.02335456475583864, 0.02335456475583864, 0.02335456475583864, 0.12738853503184713, 0.5817409766454352, 0.027600849256900213, 0.025477707006369428, 0.025477707006369428, 0.027600849256900213, 0.014861995753715499, 0.016985138004246284, 0.01910828025477707, 0.01910828025477707, 0.027600849256900213, 0.027600849256900213, 0.050955414012738856, 0.4309978768577495, 0.43312101910828027, 0.4140127388535032, 0.9002123142250531, 0.9447983014861996, 0.9490445859872612, 0.9087048832271762, 0.8152866242038217, 0.11252653927813164, 0.07430997876857749, 0.059447983014861996, 0.044585987261146494, 0.03397027600849257, 0.029723991507430998, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.02335456475583864, 0.025477707006369428, 0.025477707006369428, 0.2929936305732484, 0.28662420382165604, 0.040339702760084924, 0.910828025477707, 0.9193205944798302, 0.9129511677282378, 0.910828025477707, 0.050955414012738856, 0.07218683651804671, 0.08917197452229299, 0.09129511677282377, 0.08280254777070063, 0.0870488322717622, 0.08492569002123142, 0.08917197452229299, 0.9447983014861996, 0.09554140127388536, 0.9426751592356688, 0.9341825902335457, 0.09554140127388536, 0.9490445859872612, 0.10615711252653928, 0.9469214437367304, 0.9426751592356688, 0.12526539278131635, 0.8938428874734607, 0.9065817409766455, 0.9002123142250531, 0.8832271762208068, 0.1316348195329087, 0.9171974522292994, 0.9256900212314225, 0.9171974522292994, 0.9087048832271762, 0.1337579617834395, 0.9384288747346072, 0.9490445859872612, 0.9341825902335457, 0.13588110403397027, 0.9278131634819533, 0.9469214437367304, 0.9235668789808917, 0.13588110403397027, 0.13588110403397027, 0.9447983014861996, 0.9426751592356688, 0.13588110403397027, 0.1337579617834395, 0.12951167728237792, 0.12951167728237792, 0.12951167728237792, 0.12951167728237792, 0.12951167728237792, 0.1337579617834395, 0.15711252653927812, 0.16985138004246284, 0.16985138004246284, 0.16985138004246284, 0.16985138004246284, 0.17197452229299362, 0.1740976645435244, 0.1740976645435244, 0.18259023354564755, 0.18046709129511676, 0.524416135881104, 0.9384288747346072, 0.5753715498938429, 0.39065817409766457, 0.1910828025477707, 0.1910828025477707, 0.1910828025477707, 0.1910828025477707, 0.19745222929936307, 0.22505307855626328, 0.22717622080679406, 0.23142250530785563, 0.23354564755838642, 0.2356687898089172, 0.9490445859872612, 0.9447983014861996, 0.23779193205944799, 0.9363057324840764, 0.9256900212314225, 0.24628450106157113, 0.8832271762208068, 0.9278131634819533, 0.8662420382165605, 0.39065817409766457, 0.9299363057324841, 0.921443736730361, 0.25477707006369427, 0.2526539278131635, 0.25477707006369427, 0.25690021231422505, 0.267515923566879, 0.2653927813163482, 0.267515923566879, 0.27176220806794055, 0.2760084925690021, 0.30148619957537154, 0.33970276008492567, 0.37154989384288745, 0.4437367303609342, 0.5222929936305732, 0.89171974522293, 0.9256900212314225, 0.9447983014861996], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NTP_transf_3.gap.json b/pfam_gap_rates/NTP_transf_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa9dde49683c00d9f790fba8456d0886825bd139
--- /dev/null
+++ b/pfam_gap_rates/NTP_transf_3.gap.json
@@ -0,0 +1 @@
+{"family": "NTP_transf_3", "n_seqs": 4306, "length": 196, "gap_rates": [0.3330236878773804, 0.1158848118903855, 0.09033906177426847, 0.07826288899210404, 0.07106363214119833, 0.07454714352066884, 0.07083139804923362, 0.06990246168137483, 0.06549001393404552, 0.06456107756618672, 0.06270320483046911, 0.047143520668834184, 0.9391546679052485, 0.9405480724570366, 0.9391546679052485, 0.04435671156525778, 0.9372967951695309, 0.924059451927543, 0.035764050162563864, 0.6065954482117974, 0.9468183929400836, 0.920111472364143, 0.40687412912215515, 0.028797027403622853, 0.026706920575940547, 0.025545750116117046, 0.024384579656293544, 0.023687877380399444, 0.024152345564328843, 0.026010218300046448, 0.9233627496516489, 0.023455643288434743, 0.021597770552717138, 0.021365536460752437, 0.018810961449140733, 0.01648862052949373, 0.015095215977705528, 0.013934045517882025, 0.012540640966093822, 0.011611704598235021, 0.010682768230376219, 0.010218300046446818, 0.01045053413841152, 0.010218300046446818, 0.01045053413841152, 0.012076172782164421, 0.012540640966093822, 0.30143985137018114, 0.06943799349744542, 0.03529958197863446, 0.012540640966093822, 0.012308406874129122, 0.012308406874129122, 0.012308406874129122, 0.012308406874129122, 0.012540640966093822, 0.014630747793776126, 0.013469577333952624, 0.5578262888992104, 0.48676265675801206, 0.025081281932187643, 0.9458894565722248, 0.9384579656293544, 0.06014862981885741, 0.08987459359033906, 0.12679981421272643, 0.21017185322805387, 0.9454249883882954, 0.18578727357176034, 0.13539247561542034, 0.1121690664189503, 0.08197863446353924, 0.03855085926614027, 0.9029261495587553, 0.9489084997677659, 0.935671156525778, 0.8801672085462146, 0.02740362285183465, 0.9024616813748259, 0.02299117510450534, 0.021597770552717138, 0.019507663725034836, 0.017882025081281932, 0.01579191825359963, 0.01602415234556433, 0.03390617742684626, 0.25917324663260566, 0.09335810496980956, 0.9173246632605666, 0.03855085926614027, 0.8615884811890385, 0.023223409196470042, 0.021597770552717138, 0.02090106827682304, 0.02090106827682304, 0.020668834184858337, 0.020436600092893636, 0.020436600092893636, 0.02113330236878774, 0.021365536460752437, 0.02183000464468184, 0.02206223873664654, 0.02229447282861124, 0.03344170924291686, 0.9129122155132373, 0.04017649790989317, 0.3889921040408732, 0.826288899210404, 0.9451927542963307, 0.9156990246168137, 0.669763121226196, 0.1133302368787738, 0.04528564793311658, 0.029493729679516953, 0.026706920575940547, 0.027635856943799348, 0.027635856943799348, 0.02786809103576405, 0.02786809103576405, 0.02902926149558755, 0.029725963771481654, 0.030654900139340455, 0.034370645610775664, 0.06386437529029261, 0.0524849047840223, 0.12749651648862054, 0.056432884347422205, 0.054110543427775194, 0.0531816070599164, 0.0543427775197399, 0.056432884347422205, 0.057129586623316304, 0.06200650255457501, 0.06502554575011611, 0.06711565257779842, 0.07013469577333953, 0.07988852763585694, 0.14793311658151417, 0.20668834184858337, 0.3615884811890385, 0.2761263353460288, 0.1683697166744078, 0.1751045053413841, 0.18276823037621923, 0.18532280538783094, 0.20041802136553646, 0.20715281003251276, 0.22921504876915932, 0.2573153738968881, 0.2951695308871342, 0.32652113330236876, 0.39642359498374363, 0.4231305155596842, 0.4064096609382257, 0.9331165815141663, 0.9398513701811426, 0.9475150952159777, 0.9498374361356247, 0.9489084997677659, 0.944960520204366, 0.9352066883418486, 0.929400836042731, 0.5222944728286112, 0.46144914073385973, 0.451927542963307, 0.4540176497909893, 0.7870413376683697, 0.7749651648862053, 0.46655829075708316, 0.4691128657686948, 0.47886669763121226, 0.4828146771946122, 0.4888527635856944, 0.493032977241059, 0.4986065954482118, 0.5065025545750116, 0.5085926614026939, 0.5125406409660939, 0.5176497909893172, 0.5267069205759406, 0.532512772875058, 0.9470506270320483, 0.5503947979563399, 0.5973060845332094, 0.6223873664653972, 0.5854621458430097, 0.5912679981421273, 0.6042731072921504, 0.6177426846261032, 0.6300510915002322, 0.6418950301904319, 0.6662796098467255, 0.7004180213655364, 0.7703204830469113, 0.8281467719461217, 0.9398513701811426], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NTP_transf_8.gap.json b/pfam_gap_rates/NTP_transf_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fcce7c39ef5036693d821c3ee10d1f1231c1517
--- /dev/null
+++ b/pfam_gap_rates/NTP_transf_8.gap.json
@@ -0,0 +1 @@
+{"family": "NTP_transf_8", "n_seqs": 101, "length": 225, "gap_rates": [0.693069306930693, 0.3465346534653465, 0.27722772277227725, 0.2079207920792079, 0.18811881188118812, 0.16831683168316833, 0.12871287128712872, 0.12871287128712872, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.0891089108910891, 0.0891089108910891, 0.16831683168316833, 0.09900990099009901, 0.21782178217821782, 0.07920792079207921, 0.07920792079207921, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.06930693069306931, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.06930693069306931, 0.12871287128712872, 0.7524752475247525, 0.2079207920792079, 0.1782178217821782, 0.09900990099009901, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.5247524752475248, 0.5148514851485149, 0.07920792079207921, 0.12871287128712872, 0.22772277227722773, 0.1782178217821782, 0.1188118811881188, 0.1782178217821782, 0.13861386138613863, 0.10891089108910891, 0.1782178217821782, 0.32673267326732675, 0.25742574257425743, 0.25742574257425743, 0.297029702970297, 0.8613861386138614, 0.19801980198019803, 0.1485148514851485, 0.19801980198019803, 0.09900990099009901, 0.0891089108910891, 0.09900990099009901, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.4158415841584158, 0.40594059405940597, 0.1188118811881188, 0.10891089108910891, 0.0891089108910891, 0.07920792079207921, 0.09900990099009901, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.0594059405940594, 0.0594059405940594, 0.06930693069306931, 0.06930693069306931, 0.42574257425742573, 0.42574257425742573, 0.33663366336633666, 0.2871287128712871, 0.42574257425742573, 0.8712871287128713, 0.0594059405940594, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.0594059405940594, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.13861386138613863, 0.7326732673267327, 0.6831683168316832, 0.4752475247524752, 0.21782178217821782, 0.1188118811881188, 0.8712871287128713, 0.09900990099009901, 0.0891089108910891, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.1188118811881188, 0.6534653465346535, 0.07920792079207921, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.0891089108910891, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.7425742574257426, 0.0891089108910891, 0.10891089108910891, 0.12871287128712872, 0.1188118811881188, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.19801980198019803, 0.1782178217821782, 0.13861386138613863, 0.7425742574257426, 0.7029702970297029, 0.09900990099009901, 0.0891089108910891, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.2871287128712871, 0.8910891089108911, 0.6732673267326733, 0.25742574257425743, 0.2079207920792079, 0.10891089108910891, 0.0891089108910891, 0.09900990099009901, 0.07920792079207921, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.06930693069306931, 0.06930693069306931, 0.0891089108910891, 0.09900990099009901, 0.10891089108910891, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.13861386138613863, 0.1485148514851485, 0.1485148514851485, 0.16831683168316833, 0.1782178217821782, 0.6336633663366337, 0.27722772277227725, 0.297029702970297, 0.31683168316831684, 0.32673267326732675, 0.32673267326732675, 0.3564356435643564, 0.38613861386138615, 0.43564356435643564, 0.48514851485148514, 0.5346534653465347, 0.5841584158415841, 0.6732673267326733, 0.9405940594059405], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NTP_transf_9.gap.json b/pfam_gap_rates/NTP_transf_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c2b0273ab20bf91159df460dbc3cf88bdafc2f5
--- /dev/null
+++ b/pfam_gap_rates/NTP_transf_9.gap.json
@@ -0,0 +1 @@
+{"family": "NTP_transf_9", "n_seqs": 797, "length": 95, "gap_rates": [0.4454203262233375, 0.13801756587202008, 0.06148055207026349, 0.043914680050188205, 0.03889585947302384, 0.03262233375156838, 0.026348808030112924, 0.025094102885821833, 0.02258469259723965, 0.02132998745294856, 0.020075282308657464, 0.020075282308657464, 0.020075282308657464, 0.020075282308657464, 0.018820577164366373, 0.018820577164366373, 0.01756587202007528, 0.01756587202007528, 0.01756587202007528, 0.01631116687578419, 0.01631116687578419, 0.33877038895859474, 0.33751568381430364, 0.3337515683814304, 0.328732747804266, 0.32496863237139273, 0.015056461731493099, 0.015056461731493099, 0.015056461731493099, 0.015056461731493099, 0.012547051442910916, 0.012547051442910916, 0.012547051442910916, 0.012547051442910916, 0.011292346298619825, 0.012547051442910916, 0.018820577164366373, 0.01631116687578419, 0.03638644918444166, 0.03513174404015056, 0.01756587202007528, 0.020075282308657464, 0.01756587202007528, 0.025094102885821833, 0.027603513174404015, 0.04767879548306148, 0.03262233375156838, 0.03889585947302384, 0.037641154328732745, 0.03638644918444166, 0.033877038895859475, 0.03638644918444166, 0.03262233375156838, 0.028858218318695106, 0.028858218318695106, 0.028858218318695106, 0.028858218318695106, 0.027603513174404015, 0.027603513174404015, 0.028858218318695106, 0.030112923462986198, 0.09410288582183186, 0.9335006273525721, 0.08657465495608532, 0.08030112923462986, 0.07779171894604768, 0.944792973651192, 0.04140526976160602, 0.03513174404015056, 0.03513174404015056, 0.033877038895859475, 0.03513174404015056, 0.03513174404015056, 0.03513174404015056, 0.03513174404015056, 0.03513174404015056, 0.037641154328732745, 0.04140526976160602, 0.050188205771643665, 0.05144291091593475, 0.060225846925972396, 0.06649937264742785, 0.060225846925972396, 0.05771643663739021, 0.060225846925972396, 0.06148055207026349, 0.06524466750313676, 0.06649937264742785, 0.06775407779171895, 0.06775407779171895, 0.07151819322459223, 0.07151819322459223, 0.07653701380175659, 0.12672521957340024, 0.8607277289836889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NUDIX_2.gap.json b/pfam_gap_rates/NUDIX_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45ee7a62e8ede9b7519d80dfb055a26cc746d3e5
--- /dev/null
+++ b/pfam_gap_rates/NUDIX_2.gap.json
@@ -0,0 +1 @@
+{"family": "NUDIX_2", "n_seqs": 365, "length": 202, "gap_rates": [0.31232876712328766, 0.21095890410958903, 0.20273972602739726, 0.19452054794520549, 0.18082191780821918, 0.18082191780821918, 0.1780821917808219, 0.1780821917808219, 0.17534246575342466, 0.1726027397260274, 0.1726027397260274, 0.16712328767123288, 0.16712328767123288, 0.16712328767123288, 0.16712328767123288, 0.16712328767123288, 0.1780821917808219, 0.1643835616438356, 0.1589041095890411, 0.16986301369863013, 0.15616438356164383, 0.1506849315068493, 0.14520547945205478, 0.136986301369863, 0.13972602739726028, 0.13972602739726028, 0.13972602739726028, 0.136986301369863, 0.136986301369863, 0.13424657534246576, 0.13150684931506848, 0.1232876712328767, 0.10684931506849316, 0.10684931506849316, 0.10410958904109589, 0.10410958904109589, 0.10410958904109589, 0.09863013698630137, 0.0958904109589041, 0.09315068493150686, 0.07945205479452055, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.08493150684931507, 0.09041095890410959, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.08493150684931507, 0.11506849315068493, 0.08493150684931507, 0.08493150684931507, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.08493150684931507, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.09041095890410959, 0.08767123287671233, 0.08493150684931507, 0.08493150684931507, 0.08493150684931507, 0.08493150684931507, 0.0821917808219178, 0.07945205479452055, 0.07945205479452055, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.07945205479452055, 0.07945205479452055, 0.0821917808219178, 0.0821917808219178, 0.08493150684931507, 0.08767123287671233, 0.08767123287671233, 0.08767123287671233, 0.09863013698630137, 0.13424657534246576, 0.7780821917808219, 0.13150684931506848, 0.11232876712328767, 0.6547945205479452, 0.6821917808219178, 0.7835616438356164, 0.8712328767123287, 0.915068493150685, 0.9315068493150684, 0.947945205479452, 0.9315068493150684, 0.9260273972602739, 0.873972602739726, 0.8657534246575342, 0.7041095890410959, 0.6684931506849315, 0.6493150684931507, 0.10684931506849316, 0.10410958904109589, 0.10136986301369863, 0.10136986301369863, 0.09863013698630137, 0.09863013698630137, 0.10136986301369863, 0.09863013698630137, 0.10684931506849316, 0.10684931506849316, 0.1095890410958904, 0.10684931506849316, 0.10684931506849316, 0.10684931506849316, 0.10684931506849316, 0.10684931506849316, 0.10684931506849316, 0.10684931506849316, 0.1095890410958904, 0.1095890410958904, 0.12876712328767123, 0.1178082191780822, 0.11232876712328767, 0.11232876712328767, 0.1095890410958904, 0.11506849315068493, 0.11506849315068493, 0.11506849315068493, 0.1178082191780822, 0.11506849315068493, 0.11506849315068493, 0.11506849315068493, 0.11506849315068493, 0.11232876712328767, 0.1178082191780822, 0.1178082191780822, 0.1178082191780822, 0.11506849315068493, 0.11506849315068493, 0.11232876712328767, 0.11506849315068493, 0.11506849315068493, 0.1178082191780822, 0.12054794520547946, 0.12054794520547946, 0.1178082191780822, 0.12054794520547946, 0.12054794520547946, 0.12876712328767123, 0.12876712328767123, 0.13424657534246576, 0.13150684931506848, 0.13150684931506848, 0.13150684931506848, 0.13150684931506848, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.13150684931506848, 0.13150684931506848, 0.13150684931506848, 0.13150684931506848, 0.13150684931506848, 0.1780821917808219, 0.16986301369863013, 0.15342465753424658, 0.15342465753424658, 0.13972602739726028, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.14520547945205478, 0.14520547945205478, 0.14520547945205478, 0.14520547945205478, 0.14520547945205478, 0.14520547945205478, 0.14794520547945206, 0.15616438356164383, 0.25205479452054796], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NYN_YacP.gap.json b/pfam_gap_rates/NYN_YacP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..255dc11bc3fa85bc6d5e20d030f1003304d070de
--- /dev/null
+++ b/pfam_gap_rates/NYN_YacP.gap.json
@@ -0,0 +1 @@
+{"family": "NYN_YacP", "n_seqs": 750, "length": 171, "gap_rates": [0.14, 0.056, 0.052, 0.04666666666666667, 0.04666666666666667, 0.04666666666666667, 0.04666666666666667, 0.042666666666666665, 0.042666666666666665, 0.042666666666666665, 0.04133333333333333, 0.14533333333333334, 0.14266666666666666, 0.092, 0.08933333333333333, 0.1, 0.09333333333333334, 0.06133333333333333, 0.068, 0.636, 0.15866666666666668, 0.12933333333333333, 0.11733333333333333, 0.068, 0.05333333333333334, 0.042666666666666665, 0.03866666666666667, 0.032, 0.03333333333333333, 0.03333333333333333, 0.030666666666666665, 0.030666666666666665, 0.030666666666666665, 0.030666666666666665, 0.030666666666666665, 0.030666666666666665, 0.03333333333333333, 0.034666666666666665, 0.03333333333333333, 0.030666666666666665, 0.030666666666666665, 0.030666666666666665, 0.05466666666666667, 0.029333333333333333, 0.025333333333333333, 0.025333333333333333, 0.025333333333333333, 0.025333333333333333, 0.025333333333333333, 0.025333333333333333, 0.025333333333333333, 0.02666666666666667, 0.032, 0.030666666666666665, 0.03333333333333333, 0.034666666666666665, 0.030666666666666665, 0.050666666666666665, 0.036, 0.034666666666666665, 0.042666666666666665, 0.04133333333333333, 0.14533333333333334, 0.092, 0.08133333333333333, 0.2866666666666667, 0.032, 0.028, 0.021333333333333333, 0.02266666666666667, 0.02, 0.02, 0.02, 0.02, 0.02, 0.10533333333333333, 0.03333333333333333, 0.029333333333333333, 0.02, 0.02, 0.018666666666666668, 0.018666666666666668, 0.018666666666666668, 0.02, 0.02, 0.02, 0.02266666666666667, 0.025333333333333333, 0.02266666666666667, 0.024, 0.025333333333333333, 0.028, 0.5506666666666666, 0.07466666666666667, 0.9093333333333333, 0.9266666666666666, 0.924, 0.8413333333333334, 0.05466666666666667, 0.02666666666666667, 0.024, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.02266666666666667, 0.02266666666666667, 0.025333333333333333, 0.025333333333333333, 0.025333333333333333, 0.028, 0.025333333333333333, 0.028, 0.028, 0.028, 0.029333333333333333, 0.029333333333333333, 0.029333333333333333, 0.029333333333333333, 0.030666666666666665, 0.03333333333333333, 0.034666666666666665, 0.034666666666666665, 0.034666666666666665, 0.04, 0.048, 0.058666666666666666, 0.08933333333333333, 0.12266666666666666, 0.13866666666666666, 0.15333333333333332, 0.15466666666666667, 0.16666666666666666, 0.172, 0.18, 0.208, 0.236, 0.236, 0.252, 0.26266666666666666, 0.28, 0.31333333333333335, 0.332, 0.5853333333333334, 0.892, 0.3453333333333333, 0.344, 0.344, 0.3506666666666667, 0.352, 0.36, 0.36, 0.364, 0.37066666666666664, 0.37866666666666665, 0.384, 0.39066666666666666, 0.39466666666666667, 0.39866666666666667, 0.4026666666666667, 0.408, 0.412, 0.42, 0.43466666666666665, 0.46266666666666667, 0.508, 0.7186666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Na_Ca_ex.gap.json b/pfam_gap_rates/Na_Ca_ex.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a781fa52b39e15d971a1b59c5b28f23edb2eee71
--- /dev/null
+++ b/pfam_gap_rates/Na_Ca_ex.gap.json
@@ -0,0 +1 @@
+{"family": "Na_Ca_ex", "n_seqs": 5000, "length": 180, "gap_rates": [0.679, 0.2918, 0.1522, 0.1006, 0.068, 0.0552, 0.0464, 0.0428, 0.0408, 0.039, 0.037, 0.0346, 0.0342, 0.0314, 0.0306, 0.03, 0.0302, 0.0294, 0.0276, 0.0266, 0.0264, 0.0262, 0.0256, 0.0246, 0.0236, 0.023, 0.0228, 0.187, 0.2032, 0.188, 0.0232, 0.0198, 0.0196, 0.0186, 0.0314, 0.0192, 0.0158, 0.0146, 0.0148, 0.0478, 0.0182, 0.0128, 0.0126, 0.0128, 0.0126, 0.0124, 0.0118, 0.0114, 0.011, 0.0104, 0.0104, 0.01, 0.0096, 0.0102, 0.0092, 0.009, 0.0092, 0.0096, 0.0088, 0.0158, 0.948, 0.0086, 0.011, 0.8858, 0.913, 0.8322, 0.0092, 0.009, 0.0084, 0.0084, 0.0086, 0.0092, 0.0094, 0.0094, 0.0096, 0.0098, 0.01, 0.0102, 0.0106, 0.0112, 0.0116, 0.0114, 0.0124, 0.0128, 0.0336, 0.0176, 0.018, 0.017, 0.017, 0.017, 0.018, 0.0188, 0.092, 0.0962, 0.8234, 0.8892, 0.9196, 0.9488, 0.9328, 0.9036, 0.8662, 0.7754, 0.2454, 0.1236, 0.1046, 0.0856, 0.0938, 0.155, 0.1214, 0.938, 0.9462, 0.9286, 0.2224, 0.0942, 0.0498, 0.0436, 0.0444, 0.7554, 0.215, 0.0814, 0.093, 0.0674, 0.048, 0.0478, 0.0384, 0.0374, 0.0372, 0.0374, 0.1376, 0.0998, 0.1726, 0.1058, 0.0656, 0.0764, 0.2366, 0.1354, 0.4638, 0.438, 0.453, 0.566, 0.477, 0.6918, 0.783, 0.81, 0.8264, 0.8608, 0.8964, 0.9354, 0.9438, 0.9194, 0.8758, 0.8556, 0.8176, 0.7982, 0.7552, 0.653, 0.3156, 0.0688, 0.0682, 0.068, 0.0682, 0.0726, 0.0706, 0.0692, 0.0698, 0.07, 0.0708, 0.072, 0.0728, 0.0742, 0.0782, 0.0806, 0.082, 0.0852, 0.101, 0.1276, 0.164, 0.2338, 0.3244, 0.546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Na_sulph_symp.gap.json b/pfam_gap_rates/Na_sulph_symp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46312d9a97e872fc598ef6c41db04cbf0f156c64
--- /dev/null
+++ b/pfam_gap_rates/Na_sulph_symp.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NapB.gap.json b/pfam_gap_rates/NapB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32034838ecfac34824e96da546f2b36be89dbe19
--- /dev/null
+++ b/pfam_gap_rates/NapB.gap.json
@@ -0,0 +1 @@
+{"family": "NapB", "n_seqs": 159, "length": 130, "gap_rates": [0.8867924528301887, 0.7610062893081762, 0.6540880503144654, 0.5471698113207547, 0.4968553459119497, 0.48427672955974843, 0.4088050314465409, 0.3270440251572327, 0.3081761006289308, 0.3018867924528302, 0.29559748427672955, 0.29559748427672955, 0.2830188679245283, 0.27044025157232704, 0.31446540880503143, 0.2389937106918239, 0.22641509433962265, 0.20754716981132076, 0.20125786163522014, 0.20125786163522014, 0.20125786163522014, 0.16981132075471697, 0.1509433962264151, 0.1320754716981132, 0.1320754716981132, 0.1320754716981132, 0.12578616352201258, 0.8238993710691824, 0.8930817610062893, 0.8364779874213837, 0.8238993710691824, 0.1069182389937107, 0.11320754716981132, 0.11320754716981132, 0.09433962264150944, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.12578616352201258, 0.07547169811320754, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.05660377358490566, 0.05660377358490566, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.09433962264150944, 0.06918238993710692, 0.7610062893081762, 0.06289308176100629, 0.06289308176100629, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.050314465408805034, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.06289308176100629, 0.06289308176100629, 0.06289308176100629, 0.0880503144654088, 0.10062893081761007, 0.1320754716981132, 0.11949685534591195, 0.11949685534591195, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.10062893081761007, 0.09433962264150944, 0.0880503144654088, 0.0880503144654088, 0.0880503144654088, 0.0880503144654088, 0.0880503144654088, 0.0880503144654088, 0.08176100628930817, 0.1069182389937107, 0.8238993710691824, 0.1069182389937107, 0.11320754716981132, 0.08176100628930817, 0.10062893081761007, 0.1509433962264151, 0.13836477987421383, 0.1069182389937107, 0.11320754716981132, 0.9433962264150944, 0.0880503144654088, 0.0880503144654088, 0.09433962264150944, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.0880503144654088, 0.09433962264150944, 0.10062893081761007, 0.11949685534591195, 0.11949685534591195, 0.12578616352201258, 0.1320754716981132, 0.15723270440251572, 0.15723270440251572, 0.16352201257861634, 0.16352201257861634, 0.16352201257861634, 0.18238993710691823, 0.7861635220125787], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nbl1_Borealin_N.gap.json b/pfam_gap_rates/Nbl1_Borealin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07f3727a1f1042cb44e26ee2fbeea3a1a9763e8e
--- /dev/null
+++ b/pfam_gap_rates/Nbl1_Borealin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Nbl1_Borealin_N", "n_seqs": 159, "length": 61, "gap_rates": [0.4339622641509434, 0.2641509433962264, 0.1761006289308176, 0.13836477987421383, 0.11320754716981132, 0.0880503144654088, 0.06289308176100629, 0.06289308176100629, 0.031446540880503145, 0.025157232704402517, 0.018867924528301886, 0.012578616352201259, 0.949685534591195, 0.949685534591195, 0.949685534591195, 0.949685534591195, 0.006289308176100629, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006289308176100629, 0.006289308176100629, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.06289308176100629, 0.2578616352201258, 0.610062893081761], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ndr.gap.json b/pfam_gap_rates/Ndr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89eaab9e9ace5223e6f92162dae046f878edd001
--- /dev/null
+++ b/pfam_gap_rates/Ndr.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nefa_Nip30_N.gap.json b/pfam_gap_rates/Nefa_Nip30_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98b6a79a54716edc34853e140c5a2ee7d21bf7d3
--- /dev/null
+++ b/pfam_gap_rates/Nefa_Nip30_N.gap.json
@@ -0,0 +1 @@
+{"family": "Nefa_Nip30_N", "n_seqs": 264, "length": 111, "gap_rates": [0.4393939393939394, 0.4318181818181818, 0.42803030303030304, 0.42045454545454547, 0.4090909090909091, 0.4053030303030303, 0.38636363636363635, 0.49242424242424243, 0.36363636363636365, 0.3484848484848485, 0.32575757575757575, 0.3068181818181818, 0.2916666666666667, 0.2840909090909091, 0.2803030303030303, 0.26136363636363635, 0.24621212121212122, 0.24621212121212122, 0.23484848484848486, 0.22348484848484848, 0.21212121212121213, 0.20075757575757575, 0.1856060606060606, 0.17045454545454544, 0.15151515151515152, 0.12121212121212122, 0.10606060606060606, 0.09090909090909091, 0.4621212121212121, 0.4621212121212121, 0.4696969696969697, 0.9128787878787878, 0.6818181818181818, 0.10984848484848485, 0.09848484848484848, 0.08333333333333333, 0.06439393939393939, 0.06439393939393939, 0.056818181818181816, 0.821969696969697, 0.9204545454545454, 0.6856060606060606, 0.056818181818181816, 0.06439393939393939, 0.04924242424242424, 0.04924242424242424, 0.045454545454545456, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.03787878787878788, 0.03787878787878788, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.045454545454545456, 0.041666666666666664, 0.041666666666666664, 0.03787878787878788, 0.03787878787878788, 0.03409090909090909, 0.04924242424242424, 0.04924242424242424, 0.041666666666666664, 0.04924242424242424, 0.05303030303030303, 0.05303030303030303, 0.16666666666666666, 0.9393939393939394, 0.06818181818181818, 0.06060606060606061, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.06060606060606061, 0.06060606060606061, 0.06439393939393939, 0.06439393939393939, 0.06439393939393939, 0.06439393939393939, 0.06439393939393939, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.07196969696969698, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07954545454545454, 0.08333333333333333, 0.08712121212121213, 0.10227272727272728, 0.10984848484848485, 0.11363636363636363, 0.12878787878787878, 0.17045454545454544, 0.21212121212121213, 0.3522727272727273], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Neugrin.gap.json b/pfam_gap_rates/Neugrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7d234a0d9470bf3413641bb60828ebb4ed0d240
--- /dev/null
+++ b/pfam_gap_rates/Neugrin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nif11.gap.json b/pfam_gap_rates/Nif11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1da801a1b2342019790977a02e6b2e8359401b6d
--- /dev/null
+++ b/pfam_gap_rates/Nif11.gap.json
@@ -0,0 +1 @@
+{"family": "Nif11", "n_seqs": 220, "length": 60, "gap_rates": [0.2545454545454545, 0.24545454545454545, 0.23636363636363636, 0.1590909090909091, 0.1, 0.07272727272727272, 0.06363636363636363, 0.05909090909090909, 0.045454545454545456, 0.03636363636363636, 0.03636363636363636, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.031818181818181815, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.8954545454545455, 0.8045454545454546, 0.02727272727272727, 0.8909090909090909, 0.9454545454545454, 0.9454545454545454, 0.9454545454545454, 0.9181818181818182, 0.8818181818181818, 0.00909090909090909, 0.01818181818181818, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.85, 0.8590909090909091, 0.8545454545454545, 0.8409090909090909, 0.013636363636363636, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.02727272727272727, 0.031818181818181815, 0.03636363636363636, 0.03636363636363636, 0.045454545454545456, 0.06363636363636363, 0.1, 0.16818181818181818, 0.38636363636363635], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NifT.gap.json b/pfam_gap_rates/NifT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c87114e6f94f2260d51cf83bf27525c63b8b95e4
--- /dev/null
+++ b/pfam_gap_rates/NifT.gap.json
@@ -0,0 +1 @@
+{"family": "NifT", "n_seqs": 111, "length": 67, "gap_rates": [0.06306306306306306, 0.6936936936936937, 0.06306306306306306, 0.06306306306306306, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.05405405405405406, 0.018018018018018018, 0.12612612612612611, 0.12612612612612611, 0.009009009009009009, 0.009009009009009009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6846846846846847, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6936936936936937, 0.0, 0.23423423423423423, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009009009009009009, 0.05405405405405406, 0.036036036036036036, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0990990990990991], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NifZ.gap.json b/pfam_gap_rates/NifZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f2ab0a7943a13d88423a0c98f704e452d4f7741
--- /dev/null
+++ b/pfam_gap_rates/NifZ.gap.json
@@ -0,0 +1 @@
+{"family": "NifZ", "n_seqs": 151, "length": 78, "gap_rates": [0.7086092715231788, 0.1986754966887417, 0.09271523178807947, 0.06622516556291391, 0.033112582781456956, 0.013245033112582781, 0.006622516556291391, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9205298013245033, 0.7748344370860927, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.013245033112582781, 0.0, 0.0, 0.0, 0.9403973509933775, 0.9403973509933775, 0.9403973509933775, 0.9403973509933775, 0.16556291390728478, 0.039735099337748346, 0.013245033112582781, 0.013245033112582781, 0.006622516556291391, 0.0, 0.006622516556291391, 0.006622516556291391, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.10596026490066225], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nitrate_red_gam.gap.json b/pfam_gap_rates/Nitrate_red_gam.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d672ca1e34eb5fb14e9bf6007984b1de973b7124
--- /dev/null
+++ b/pfam_gap_rates/Nitrate_red_gam.gap.json
@@ -0,0 +1 @@
+{"family": "Nitrate_red_gam", "n_seqs": 608, "length": 232, "gap_rates": [0.8026315789473685, 0.5608552631578947, 0.5032894736842105, 0.49835526315789475, 0.4901315789473684, 0.4901315789473684, 0.48848684210526316, 0.48848684210526316, 0.48848684210526316, 0.48848684210526316, 0.48519736842105265, 0.4819078947368421, 0.4769736842105263, 0.4720394736842105, 0.47039473684210525, 0.47039473684210525, 0.46710526315789475, 0.4654605263157895, 0.46381578947368424, 0.46381578947368424, 0.46381578947368424, 0.46381578947368424, 0.46381578947368424, 0.4621710526315789, 0.4605263157894737, 0.4605263157894737, 0.4605263157894737, 0.46381578947368424, 0.46381578947368424, 0.46381578947368424, 0.4605263157894737, 0.4605263157894737, 0.46381578947368424, 0.4621710526315789, 0.4621710526315789, 0.45723684210526316, 0.4457236842105263, 0.41118421052631576, 0.3980263157894737, 0.3536184210526316, 0.3190789473684211, 0.29276315789473684, 0.2730263157894737, 0.2631578947368421, 0.25493421052631576, 0.24013157894736842, 0.24013157894736842, 0.23355263157894737, 0.2236842105263158, 0.2138157894736842, 0.20723684210526316, 0.20230263157894737, 0.19407894736842105, 0.1924342105263158, 0.19736842105263158, 0.19407894736842105, 0.1924342105263158, 0.1875, 0.18092105263157895, 0.18421052631578946, 0.1924342105263158, 0.20065789473684212, 0.19572368421052633, 0.19736842105263158, 0.18914473684210525, 0.1825657894736842, 0.17927631578947367, 0.18092105263157895, 0.18092105263157895, 0.18092105263157895, 0.17763157894736842, 0.17927631578947367, 0.1825657894736842, 0.17434210526315788, 0.17434210526315788, 0.17763157894736842, 0.3569078947368421, 0.25493421052631576, 0.22697368421052633, 0.21217105263157895, 0.20559210526315788, 0.19736842105263158, 0.15296052631578946, 0.15953947368421054, 0.1875, 0.17763157894736842, 0.28289473684210525, 0.2138157894736842, 0.10526315789473684, 0.09375, 0.11677631578947369, 0.06578947368421052, 0.03618421052631579, 0.03289473684210526, 0.03289473684210526, 0.03125, 0.03453947368421053, 0.03453947368421053, 0.03289473684210526, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.029605263157894735, 0.029605263157894735, 0.029605263157894735, 0.029605263157894735, 0.03618421052631579, 0.03618421052631579, 0.03289473684210526, 0.03289473684210526, 0.04111842105263158, 0.03782894736842105, 0.03453947368421053, 0.03618421052631579, 0.03289473684210526, 0.03289473684210526, 0.029605263157894735, 0.029605263157894735, 0.027960526315789474, 0.027960526315789474, 0.027960526315789474, 0.027960526315789474, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.024671052631578948, 0.027960526315789474, 0.03618421052631579, 0.04276315789473684, 0.05098684210526316, 0.06578947368421052, 0.07072368421052631, 0.6694078947368421, 0.7598684210526315, 0.9111842105263158, 0.9292763157894737, 0.8075657894736842, 0.7171052631578947, 0.649671052631579, 0.13157894736842105, 0.18585526315789475, 0.7532894736842105, 0.5641447368421053, 0.47368421052631576, 0.40460526315789475, 0.9325657894736842, 0.23519736842105263, 0.08717105263157894, 0.08388157894736842, 0.08223684210526316, 0.08223684210526316, 0.08388157894736842, 0.08388157894736842, 0.08717105263157894, 0.09375, 0.09210526315789473, 0.08881578947368421, 0.09539473684210527, 0.09375, 0.09703947368421052, 0.09703947368421052, 0.10197368421052631, 0.10855263157894737, 0.9424342105263158, 0.7467105263157895, 0.12006578947368421, 0.15789473684210525, 0.2565789473684211, 0.23190789473684212, 0.1513157894736842, 0.1069078947368421, 0.10855263157894737, 0.09539473684210527, 0.09703947368421052, 0.09703947368421052, 0.10526315789473684, 0.11019736842105263, 0.09210526315789473, 0.09375, 0.09210526315789473, 0.09046052631578948, 0.09046052631578948, 0.09046052631578948, 0.09046052631578948, 0.09046052631578948, 0.09210526315789473, 0.09210526315789473, 0.09046052631578948, 0.09210526315789473, 0.09210526315789473, 0.09210526315789473, 0.09375, 0.09375, 0.09375, 0.09703947368421052, 0.09703947368421052, 0.09703947368421052, 0.10032894736842106, 0.23190789473684212, 0.2598684210526316, 0.912828947368421, 0.9095394736842105, 0.29605263157894735, 0.31085526315789475, 0.3223684210526316, 0.34210526315789475, 0.3684210526315789, 0.3815789473684211, 0.3996710526315789, 0.42269736842105265, 0.4440789473684211, 0.48026315789473684, 0.4868421052631579, 0.4901315789473684, 0.4901315789473684, 0.49835526315789475, 0.506578947368421, 0.5773026315789473], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nodulin_late.gap.json b/pfam_gap_rates/Nodulin_late.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2366206662eed475eb552c07535f20ac3f1aa8fa
--- /dev/null
+++ b/pfam_gap_rates/Nodulin_late.gap.json
@@ -0,0 +1 @@
+{"family": "Nodulin_late", "n_seqs": 573, "length": 66, "gap_rates": [0.07853403141361257, 0.07329842931937172, 0.05410122164048865, 0.06108202443280977, 0.05410122164048865, 0.02268760907504363, 0.019197207678883072, 0.017452006980802792, 0.019197207678883072, 0.013961605584642234, 0.008726003490401396, 0.0017452006980802793, 0.0017452006980802793, 0.0, 0.0, 0.0, 0.0017452006980802793, 0.0034904013961605585, 0.005235602094240838, 0.0034904013961605585, 0.02443280977312391, 0.02268760907504363, 0.015706806282722512, 0.015706806282722512, 0.020942408376963352, 0.6893542757417103, 0.787085514834206, 0.8795811518324608, 0.9284467713787086, 0.944153577661431, 0.9109947643979057, 0.8132635253054101, 0.7556719022687609, 0.5863874345549738, 0.32111692844677137, 0.14485165794066318, 0.04537521815008726, 0.031413612565445025, 0.02617801047120419, 0.02617801047120419, 0.027923211169284468, 0.029668411867364748, 0.029668411867364748, 0.03315881326352531, 0.031413612565445025, 0.031413612565445025, 0.038394415357766144, 0.04363001745200698, 0.8638743455497382, 0.4851657940663176, 0.35776614310645727, 0.2181500872600349, 0.07853403141361257, 0.06282722513089005, 0.8952879581151832, 0.06282722513089005, 0.06457242582897033, 0.059336823734729496, 0.06457242582897033, 0.06806282722513089, 0.07155322862129145, 0.11518324607329843, 0.14659685863874344, 0.16055846422338568, 0.16404886561954624, 0.5549738219895288], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nop52.gap.json b/pfam_gap_rates/Nop52.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d21f3069d42ef5317f0f3aa386b1d19e90ac5ba5
--- /dev/null
+++ b/pfam_gap_rates/Nop52.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nop53.gap.json b/pfam_gap_rates/Nop53.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..226563cb9222b5f47c4d60c032a967dcb054dc08
--- /dev/null
+++ b/pfam_gap_rates/Nop53.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Not1.gap.json b/pfam_gap_rates/Not1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b304621184dd5eda5d327337513c21acfaf77af2
--- /dev/null
+++ b/pfam_gap_rates/Not1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NqrM.gap.json b/pfam_gap_rates/NqrM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dabe14396a1b13b5eb4edab44752b4d4e7abfb3f
--- /dev/null
+++ b/pfam_gap_rates/NqrM.gap.json
@@ -0,0 +1 @@
+{"family": "NqrM", "n_seqs": 143, "length": 47, "gap_rates": [0.08391608391608392, 0.006993006993006993, 0.006993006993006993, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006993006993006993, 0.013986013986013986, 0.013986013986013986, 0.03496503496503497, 0.03496503496503497, 0.04195804195804196, 0.027972027972027972, 0.013986013986013986, 0.027972027972027972, 0.006993006993006993, 0.006993006993006993, 0.46153846153846156, 0.013986013986013986, 0.5734265734265734, 0.6223776223776224, 0.5664335664335665, 0.013986013986013986, 0.03496503496503497, 0.04895104895104895, 0.13986013986013987, 0.14685314685314685, 0.15384615384615385, 0.15384615384615385, 0.1958041958041958, 0.20279720279720279, 0.23076923076923078, 0.3006993006993007, 0.32867132867132864, 0.3916083916083916, 0.42657342657342656, 0.48951048951048953, 0.6573426573426573, 0.9440559440559441], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nucleos_tra2_N.gap.json b/pfam_gap_rates/Nucleos_tra2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..993c24bf534cdc7d0a5118566efe4adb7daeaef5
--- /dev/null
+++ b/pfam_gap_rates/Nucleos_tra2_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ODR4-like.gap.json b/pfam_gap_rates/ODR4-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f1a6e92207f1e2b323dd3499213bc988b821ebc
--- /dev/null
+++ b/pfam_gap_rates/ODR4-like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ORC6.gap.json b/pfam_gap_rates/ORC6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7309179b0ff6c2797ee91484e4e0d4949b7f6043
--- /dev/null
+++ b/pfam_gap_rates/ORC6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Octopine_DH.gap.json b/pfam_gap_rates/Octopine_DH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a54382214b30cf58b9eab749696be48f8923ad0f
--- /dev/null
+++ b/pfam_gap_rates/Octopine_DH.gap.json
@@ -0,0 +1 @@
+{"family": "Octopine_DH", "n_seqs": 239, "length": 192, "gap_rates": [0.9330543933054394, 0.36401673640167365, 0.10460251046025104, 0.05439330543933055, 0.04602510460251046, 0.03765690376569038, 0.03765690376569038, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.06694560669456066, 0.03765690376569038, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.28451882845188287, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.7364016736401674, 0.7489539748953975, 0.7782426778242678, 0.8242677824267782, 0.8828451882845189, 0.9456066945606695, 0.9121338912133892, 0.8493723849372385, 0.8075313807531381, 0.7531380753138075, 0.7405857740585774, 0.7280334728033473, 0.029288702928870293, 0.08786610878661087, 0.08368200836820083, 0.08786610878661087, 0.9246861924686193, 0.9414225941422594, 0.9414225941422594, 0.9414225941422594, 0.9414225941422594, 0.9372384937238494, 0.9205020920502092, 0.4100418410041841, 0.21338912133891214, 0.21338912133891214, 0.19246861924686193, 0.13807531380753138, 0.1297071129707113, 0.13807531380753138, 0.100418410041841, 0.058577405857740586, 0.029288702928870293, 0.029288702928870293, 0.02510460251046025, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.02092050209205021, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.7698744769874477, 0.7782426778242678, 0.7949790794979079, 0.8284518828451883, 0.7866108786610879, 0.7698744769874477, 0.7573221757322176, 0.012552301255230125, 0.012552301255230125, 0.7405857740585774, 0.0502092050209205, 0.11297071129707113, 0.10460251046025104, 0.03765690376569038, 0.04184100418410042, 0.04184100418410042, 0.10460251046025104, 0.09205020920502092, 0.899581589958159, 0.029288702928870293, 0.012552301255230125, 0.008368200836820083, 0.012552301255230125, 0.012552301255230125, 0.13807531380753138, 0.5146443514644351, 0.47280334728033474, 0.4309623430962343, 0.09205020920502092, 0.9414225941422594, 0.0794979079497908, 0.06276150627615062, 0.0502092050209205, 0.03765690376569038, 0.03765690376569038, 0.02092050209205021, 0.016736401673640166, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.0041841004184100415, 0.9414225941422594, 0.012552301255230125, 0.0, 0.06694560669456066, 0.06276150627615062, 0.0041841004184100415, 0.0, 0.0, 0.0041841004184100415, 0.0, 0.0, 0.029288702928870293, 0.02092050209205021, 0.04184100418410042, 0.7907949790794979, 0.0041841004184100415, 0.6317991631799164, 0.6359832635983264, 0.6443514644351465, 0.702928870292887, 0.899581589958159, 0.9330543933054394, 0.7740585774058577, 0.6485355648535565, 0.6443514644351465, 0.6359832635983264, 0.6317991631799164, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0041841004184100415, 0.012552301255230125, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.03765690376569038, 0.06276150627615062, 0.14225941422594143, 0.36401673640167365, 0.803347280334728], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OpuAC.gap.json b/pfam_gap_rates/OpuAC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa838f3e9e02f43921e7f8640e77e1b4a09c17a7
--- /dev/null
+++ b/pfam_gap_rates/OpuAC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OsmC.gap.json b/pfam_gap_rates/OsmC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c27e7bf9ad3d90074569102926e85a949b01f668
--- /dev/null
+++ b/pfam_gap_rates/OsmC.gap.json
@@ -0,0 +1 @@
+{"family": "OsmC", "n_seqs": 3314, "length": 115, "gap_rates": [0.49064574532287264, 0.33977066988533494, 0.18346409173204586, 0.09535304767652383, 0.04164152082076041, 0.026554013277006638, 0.02172601086300543, 0.015992757996378996, 0.01448400724200362, 0.01388050694025347, 0.012975256487628244, 0.012673506336753168, 0.011768255884127943, 0.010259505129752565, 0.010259505129752565, 0.009354254677127338, 0.009052504526252263, 0.009052504526252263, 0.009052504526252263, 0.009052504526252263, 0.007543753771876886, 0.00724200362100181, 0.006638503319251659, 0.006336753168376584, 0.006035003017501509, 0.005431502715751358, 0.006035003017501509, 0.0051297525648762825, 0.005431502715751358, 0.005431502715751358, 0.005431502715751358, 0.028364514182257092, 0.01659625829812915, 0.009052504526252263, 0.007543753771876886, 0.8611949305974653, 0.010259505129752565, 0.007845503922751962, 0.006336753168376584, 0.8955944477972239, 0.8820156910078455, 0.0051297525648762825, 0.006638503319251659, 0.006336753168376584, 0.00724200362100181, 0.013578756789378395, 0.024743512371756187, 0.8949909474954737, 0.8735666867833434, 0.014785757392878697, 0.015389257694628847, 0.016898008449004225, 0.026554013277006638, 0.02715751357875679, 0.13427881713940856, 0.17350633675316837, 0.1499698249849125, 0.7899818949909475, 0.8286059143029572, 0.8394689197344599, 0.8817139408569704, 0.8470126735063368, 0.8313216656608329, 0.8210621605310803, 0.7498491249245625, 0.412190706095353, 0.038322269161134584, 0.016294508147254073, 0.011768255884127943, 0.011768255884127943, 0.02504526252263126, 0.008750754375377187, 0.008147254073627036, 0.006336753168376584, 0.008750754375377187, 0.008750754375377187, 0.09293904646952324, 0.13940856970428486, 0.02383826191913096, 0.024743512371756187, 0.05974652987326494, 0.028666264333132168, 0.6511768255884128, 0.24683162341581172, 0.017501508750754374, 0.014785757392878697, 0.012673506336753168, 0.008147254073627036, 0.008750754375377187, 0.009052504526252263, 0.01448400724200362, 0.009052504526252263, 0.03047676523838262, 0.011164755582377792, 0.807785153892577, 0.056729028364514184, 0.011164755582377792, 0.009957754978877489, 0.010259505129752565, 0.009957754978877489, 0.010863005431502716, 0.011466505733252867, 0.012371756185878094, 0.012673506336753168, 0.013277006638503319, 0.9423657211828605, 0.029571514785757393, 0.06487628243814123, 0.040132770066385035, 0.056729028364514184, 0.08931804465902234, 0.13397706698853348, 0.23355461677730838, 0.44327097163548584, 0.9484007242003621], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OstA.gap.json b/pfam_gap_rates/OstA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88cd6475841ee32d0e5fca91b788bf8168607942
--- /dev/null
+++ b/pfam_gap_rates/OstA.gap.json
@@ -0,0 +1 @@
+{"family": "OstA", "n_seqs": 1114, "length": 148, "gap_rates": [0.6409335727109515, 0.34560143626570916, 0.2594254937163375, 0.2001795332136445, 0.17863554757630162, 0.16786355475763015, 0.15350089766606823, 0.13734290843806105, 0.12926391382405744, 0.12836624775583483, 0.12746858168761221, 0.11400359066427289, 0.10323159784560143, 0.10323159784560143, 0.19569120287253142, 0.09694793536804308, 0.08886894075403949, 0.08797127468581688, 0.08617594254937164, 0.08348294434470377, 0.08258527827648116, 0.08258527827648116, 0.08168761220825853, 0.07989228007181329, 0.07809694793536805, 0.07360861759425494, 0.07091561938958707, 0.07091561938958707, 0.06373429084380611, 0.06373429084380611, 0.06014362657091562, 0.05834829443447038, 0.05655296229802514, 0.05655296229802514, 0.05655296229802514, 0.05745062836624776, 0.05745062836624776, 0.05834829443447038, 0.059245960502693, 0.06283662477558348, 0.06283662477558348, 0.06552962298025135, 0.06642728904847396, 0.5601436265709157, 0.6166965888689407, 0.6615798922800719, 0.6822262118491921, 0.6947935368043088, 0.7073608617594255, 0.718132854578097, 0.7342908438061041, 0.7666068222621185, 0.8563734290843806, 0.8868940754039497, 0.900359066427289, 0.921903052064632, 0.9281867145421903, 0.9138240574506283, 0.895870736086176, 0.8788150807899462, 0.7881508078994613, 0.744165170556553, 0.7289048473967684, 0.7145421903052065, 0.7010771992818672, 0.6876122082585279, 0.6678635547576302, 0.6579892280071813, 0.5825852782764811, 0.5305206463195691, 0.3904847396768402, 0.2791741472172352, 0.13734290843806105, 0.12746858168761221, 0.12477558348294435, 0.09066427289048475, 0.08976660682226212, 0.08797127468581688, 0.09066427289048475, 0.09156193895870736, 0.09425493716337523, 0.8877917414721723, 0.9425493716337523, 0.6732495511669659, 0.48922800718132853, 0.45511669658886894, 0.43357271095152605, 0.42100538599640935, 0.4012567324955117, 0.388689407540395, 0.09605026929982047, 0.09245960502692999, 0.09156193895870736, 0.19210053859964094, 0.09066427289048475, 0.07091561938958707, 0.05475763016157989, 0.05296229802513465, 0.05206463195691203, 0.05026929982046679, 0.05296229802513465, 0.05565529622980251, 0.05475763016157989, 0.05565529622980251, 0.05655296229802514, 0.05655296229802514, 0.06104129263913824, 0.06193895870736086, 0.06193895870736086, 0.11669658886894076, 0.0807899461400359, 0.06822262118491922, 0.07001795332136446, 0.13734290843806105, 0.08617594254937164, 0.0718132854578097, 0.07450628366247755, 0.07360861759425494, 0.22980251346499103, 0.9344703770197487, 0.0807899461400359, 0.07989228007181329, 0.0807899461400359, 0.08258527827648116, 0.08707360861759425, 0.7190305206463196, 0.7612208258527827, 0.7764811490125674, 0.7549371633752244, 0.6903052064631957, 0.0933572710951526, 0.09605026929982047, 0.09694793536804308, 0.10053859964093358, 0.10143626570915619, 0.10323159784560143, 0.1059245960502693, 0.10861759425493717, 0.12208258527827648, 0.12836624775583483, 0.1319569120287253, 0.13734290843806105, 0.15170556552962297, 0.16427289048473967, 0.18940754039497307, 0.24057450628366248, 0.2980251346499102, 0.43357271095152605], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxidored_q5_N.gap.json b/pfam_gap_rates/Oxidored_q5_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd0b5d6af0c5fa4474c227fbddf6d72c3c26cc48
--- /dev/null
+++ b/pfam_gap_rates/Oxidored_q5_N.gap.json
@@ -0,0 +1 @@
+{"family": "Oxidored_q5_N", "n_seqs": 350, "length": 120, "gap_rates": [0.94, 0.9371428571428572, 0.9314285714285714, 0.9085714285714286, 0.8942857142857142, 0.8885714285714286, 0.8857142857142857, 0.8828571428571429, 0.8742857142857143, 0.8685714285714285, 0.8685714285714285, 0.8657142857142858, 0.8628571428571429, 0.86, 0.8571428571428571, 0.8571428571428571, 0.8571428571428571, 0.86, 0.84, 0.82, 0.8285714285714286, 0.7628571428571429, 0.7542857142857143, 0.7542857142857143, 0.7285714285714285, 0.7142857142857143, 0.6942857142857143, 0.6885714285714286, 0.6657142857142857, 0.6657142857142857, 0.6628571428571428, 0.6628571428571428, 0.66, 0.6542857142857142, 0.6485714285714286, 0.64, 0.62, 0.6, 0.5828571428571429, 0.5771428571428572, 0.7885714285714286, 0.5371428571428571, 0.8657142857142858, 0.8657142857142858, 0.8657142857142858, 0.9485714285714286, 0.9457142857142857, 0.8657142857142858, 0.8657142857142858, 0.8657142857142858, 0.5057142857142857, 0.4542857142857143, 0.43142857142857144, 0.38285714285714284, 0.3485714285714286, 0.3142857142857143, 0.26, 0.21142857142857144, 0.18, 0.08857142857142856, 0.9114285714285715, 0.017142857142857144, 0.011428571428571429, 0.008571428571428572, 0.008571428571428572, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.005714285714285714, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.008571428571428572, 0.008571428571428572, 0.011428571428571429, 0.011428571428571429, 0.4685714285714286, 0.32857142857142857, 0.29428571428571426, 0.27714285714285714, 0.05714285714285714, 0.02, 0.022857142857142857, 0.02, 0.02, 0.022857142857142857, 0.025714285714285714, 0.045714285714285714, 0.09142857142857143, 0.16857142857142857, 0.22, 0.28285714285714286, 0.4742857142857143, 0.64, 0.6971428571428572, 0.7228571428571429, 0.8257142857142857, 0.9371428571428572, 0.9428571428571428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxysterol_BP.gap.json b/pfam_gap_rates/Oxysterol_BP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1381dfe78ed63f66c98f87af7bd9b428cf8ffa5
--- /dev/null
+++ b/pfam_gap_rates/Oxysterol_BP.gap.json
@@ -0,0 +1 @@
+{"family": "Oxysterol_BP", "n_seqs": 1988, "length": 464, "gap_rates": [0.5543259557344065, 0.4104627766599598, 0.3606639839034205, 0.30935613682092555, 0.29979879275653926, 0.28722334004024147, 0.2761569416498994, 0.5306841046277666, 0.5010060362173038, 0.22484909456740443, 0.1976861167002012, 0.19014084507042253, 0.17655935613682092, 0.170523138832998, 0.1675050301810865, 0.15845070422535212, 0.1579476861167002, 0.15543259557344064, 0.1493963782696177, 0.14989939637826963, 0.14788732394366197, 0.14738430583501005, 0.14738430583501005, 0.14688128772635814, 0.14688128772635814, 0.14587525150905434, 0.14587525150905434, 0.14587525150905434, 0.14336016096579476, 0.14336016096579476, 0.14235412474849093, 0.18561368209255533, 0.14084507042253522, 0.14185110663983905, 0.1403420523138833, 0.1398390342052314, 0.13832997987927564, 0.13883299798792756, 0.13883299798792756, 0.13832997987927564, 0.13782696177062373, 0.13732394366197184, 0.1358148893360161, 0.13380281690140844, 0.136317907444668, 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\ No newline at end of file
diff --git a/pfam_gap_rates/P2X_receptor.gap.json b/pfam_gap_rates/P2X_receptor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad32eb71e32c0c34a67c379c5ca45e15910ca590
--- /dev/null
+++ b/pfam_gap_rates/P2X_receptor.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PA14.gap.json b/pfam_gap_rates/PA14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..340f70a3a2c78900e3de78b9616c89a62ed0d779
--- /dev/null
+++ b/pfam_gap_rates/PA14.gap.json
@@ -0,0 +1 @@
+{"family": "PA14", "n_seqs": 1497, "length": 167, "gap_rates": [0.9465597862391449, 0.8162992651970608, 0.6973947895791583, 0.5898463593854375, 0.5865063460253841, 0.9131596526386105, 0.5678022712090849, 0.5337341349365398, 0.5177020708082832, 0.5070140280561122, 0.5043420173680695, 0.5016700066800267, 0.49899799599198397, 0.5404141616566466, 0.5110220440881763, 0.49966599866399464, 0.49498997995991983, 0.49031396125584503, 0.4876419505678023, 0.503006012024048, 0.49432197728790916, 0.48096192384769537, 0.8724114896459586, 0.927187708750835, 0.9318637274549099, 0.9044756179024717, 0.8416833667334669, 0.49031396125584503, 0.47227788911155644, 0.4301937207748831, 0.4188376753507014, 0.41148964595858384, 0.4021376085504342, 0.39946559786239144, 0.3967935871743487, 0.3914495657982632, 0.38744154976619904, 0.3894455577822311, 0.37341349365397464, 0.36472945891783565, 0.4315297261189045, 0.37207748830995324, 0.3406813627254509, 0.312625250501002, 0.2852371409485638, 0.25985303941215765, 0.23513694054776219, 0.19772879091516365, 0.16633266533066132, 0.13159652638610556, 0.09886439545758183, 0.07080828323313293, 0.05410821643286573, 0.04008016032064128, 0.03674014696058784, 0.03006012024048096, 0.026720106880427523, 0.024716098864395457, 0.02338009352037408, 0.02404809619238477, 0.02404809619238477, 0.02137608550434202, 0.09084836339345358, 0.053440213760855046, 0.018704074816299265, 0.013360053440213761, 0.013360053440213761, 0.012692050768203072, 0.012024048096192385, 0.006680026720106881, 0.024716098864395457, 0.02137608550434202, 0.019372077488309953, 0.9311957247828991, 0.006680026720106881, 0.005344021376085505, 0.006680026720106881, 0.004008016032064128, 0.007348029392117568, 0.005344021376085505, 0.004676018704074816, 0.004676018704074816, 0.9492317969271877, 0.005344021376085505, 0.008684034736138945, 0.014696058784235137, 0.01603206412825651, 0.018036072144288578, 0.02137608550434202, 0.026052104208416832, 0.028056112224448898, 0.025384101536406144, 0.02738810955243821, 0.9231796927187709, 0.8964595858383434, 0.13360053440213762, 0.16366065464261856, 0.17234468937875752, 0.16432865731462926, 0.6987307949231797, 0.8603874415497662, 0.9098196392785571, 0.9305277221108884, 0.9418837675350702, 0.9211756847027388, 0.8744154976619907, 0.8450233800935204, 0.6472945891783567, 0.5871743486973948, 0.5711422845691383, 0.5490981963927856, 0.5217100868403474, 0.46092184368737477, 0.43687374749499, 0.3593854375417502, 0.15497661990647962, 0.07548430193720775, 0.06546426185704743, 0.06212424849699399, 0.06279225116900468, 0.05811623246492986, 0.05811623246492986, 0.058784235136940546, 0.06012024048096192, 0.06012024048096192, 0.06479625918503674, 0.06346025384101536, 0.0674682698730795, 0.14428857715430862, 0.08082832331329326, 0.07682030728122913, 0.07147628590514363, 0.07214428857715431, 0.0781563126252505, 0.08082832331329326, 0.09084836339345358, 0.1062124248496994, 0.12157648630594522, 0.13560454241816966, 0.16032064128256512, 0.18303273213092852, 0.20240480961923848, 0.22645290581162325, 0.24916499665998665, 0.280561122244489, 0.30527722110888444, 0.8937875751503006, 0.9305277221108884, 0.9225116900467601, 0.8750835003340013, 0.7962591850367402, 0.39478957915831664, 0.3954575818303273, 0.41282565130260523, 0.4255177020708083, 0.44488977955911824, 0.4742818971275885, 0.5043420173680695, 0.5364061456245826, 0.5791583166332666, 0.6065464261857048, 0.6519706078824316, 0.6913827655310621, 0.7334669338677354, 0.7661990647962592, 0.832999331997328, 0.8931195724782899], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAC3.gap.json b/pfam_gap_rates/PAC3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e319d7ed95b49d8d9f0a26895ae2ef958f41d2a
--- /dev/null
+++ b/pfam_gap_rates/PAC3.gap.json
@@ -0,0 +1 @@
+{"family": "PAC3", "n_seqs": 139, "length": 123, "gap_rates": [0.1223021582733813, 0.08633093525179857, 0.07194244604316546, 0.06474820143884892, 0.05755395683453238, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.02877697841726619, 0.9064748201438849, 0.9496402877697842, 0.9496402877697842, 0.9064748201438849, 0.8776978417266187, 0.3381294964028777, 0.302158273381295, 0.05755395683453238, 0.04316546762589928, 0.050359712230215826, 0.06474820143884892, 0.08633093525179857, 0.05755395683453238, 0.07194244604316546, 0.050359712230215826, 0.007194244604316547, 0.5971223021582733, 0.6690647482014388, 0.7122302158273381, 0.7338129496402878, 0.7841726618705036, 0.8057553956834532, 0.8705035971223022, 0.935251798561151, 0.9496402877697842, 0.9496402877697842, 0.8848920863309353, 0.8057553956834532, 0.8057553956834532, 0.7482014388489209, 0.7122302158273381, 0.6906474820143885, 0.6330935251798561, 0.5683453237410072, 0.0, 0.0, 0.007194244604316547, 0.007194244604316547, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8057553956834532, 0.8920863309352518, 0.8561151079136691, 0.39568345323741005, 0.0, 0.0, 0.007194244604316547, 0.014388489208633094, 0.014388489208633094, 0.9424460431654677, 0.9280575539568345, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.02877697841726619, 0.7266187050359713, 0.9280575539568345, 0.9424460431654677, 0.935251798561151, 0.920863309352518, 0.7050359712230215, 0.20863309352517986, 0.12949640287769784, 0.12949640287769784, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.05755395683453238, 0.05755395683453238, 0.06474820143884892, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07194244604316546, 0.07913669064748201, 0.8345323741007195, 0.8057553956834532, 0.10071942446043165, 0.1366906474820144, 0.1510791366906475, 0.17985611510791366, 0.20863309352517986, 0.2517985611510791, 0.2733812949640288, 0.302158273381295, 0.3237410071942446, 0.33093525179856115, 0.33093525179856115, 0.34532374100719426, 0.37410071942446044, 0.4028776978417266, 0.4748201438848921, 0.5467625899280576, 0.8345323741007195], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PACT_coil_coil.gap.json b/pfam_gap_rates/PACT_coil_coil.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c202012ba6e3130fddc8f1229978c5ac269a7b36
--- /dev/null
+++ b/pfam_gap_rates/PACT_coil_coil.gap.json
@@ -0,0 +1 @@
+{"family": "PACT_coil_coil", "n_seqs": 158, "length": 100, "gap_rates": [0.18354430379746836, 0.06962025316455696, 0.04430379746835443, 0.03164556962025317, 0.03164556962025317, 0.02531645569620253, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.006329113924050633, 0.012658227848101266, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.7088607594936709, 0.8354430379746836, 0.9113924050632911, 0.9240506329113924, 0.9430379746835443, 0.9177215189873418, 0.8734177215189873, 0.8291139240506329, 0.620253164556962, 0.8164556962025317, 0.8354430379746836, 0.8860759493670886, 0.9240506329113924, 0.9367088607594937, 0.9367088607594937, 0.8987341772151899, 0.8481012658227848, 0.8227848101265823, 0.8164556962025317, 0.5759493670886076, 0.46835443037974683, 0.43037974683544306, 0.3860759493670886, 0.2848101265822785, 0.23417721518987342, 0.06962025316455696, 0.056962025316455694, 0.04430379746835443, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.06962025316455696, 0.0759493670886076, 0.08227848101265822, 0.10759493670886076, 0.12025316455696203, 0.12025316455696203, 0.13291139240506328, 0.16455696202531644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAP_fibrillin.gap.json b/pfam_gap_rates/PAP_fibrillin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9de1c7ab94683d544aeb0c0ab31a93d46127110
--- /dev/null
+++ b/pfam_gap_rates/PAP_fibrillin.gap.json
@@ -0,0 +1 @@
+{"family": "PAP_fibrillin", "n_seqs": 701, "length": 250, "gap_rates": [0.6918687589158345, 0.5263908701854494, 0.43509272467902993, 0.39514978601997147, 0.38231098430813126, 0.37375178316690444, 0.3723252496433666, 0.3680456490727532, 0.3609129814550642, 0.3566333808844508, 0.3466476462196862, 0.33951497860199714, 0.33523537803138376, 0.33238231098430815, 0.9472182596291013, 0.340941512125535, 0.3338088445078459, 0.32667617689015693, 0.3209700427960057, 0.9386590584878745, 0.29814550641940085, 0.26105563480741795, 0.2396576319543509, 0.21398002853067047, 0.19115549215406563, 0.9457917261055635, 0.9300998573466477, 0.1840228245363766, 0.17403708987161198, 0.16547788873038516, 0.16405135520684735, 0.16405135520684735, 0.16262482168330955, 0.16262482168330955, 0.16262482168330955, 0.16262482168330955, 0.16119828815977175, 0.16119828815977175, 0.16119828815977175, 0.16405135520684735, 0.16262482168330955, 0.18830242510699002, 0.16975748930099857, 0.17261055634807418, 0.16405135520684735, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PAS_11.gap.json b/pfam_gap_rates/PAS_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..166f32f8581dc699fe5cb301ec560d5c546d199a
--- /dev/null
+++ b/pfam_gap_rates/PAS_11.gap.json
@@ -0,0 +1 @@
+{"family": "PAS_11", "n_seqs": 524, "length": 117, "gap_rates": [0.9236641221374046, 0.5877862595419847, 0.24427480916030533, 0.12786259541984732, 0.08969465648854962, 0.08587786259541985, 0.08206106870229007, 0.08015267175572519, 0.07824427480916031, 0.07061068702290077, 0.0648854961832061, 0.0648854961832061, 0.0648854961832061, 0.06297709923664122, 0.06297709923664122, 0.0648854961832061, 0.06297709923664122, 0.061068702290076333, 0.061068702290076333, 0.8454198473282443, 0.8282442748091603, 0.8091603053435115, 0.061068702290076333, 0.0648854961832061, 0.06297709923664122, 0.06297709923664122, 0.05916030534351145, 0.05534351145038168, 0.04770992366412214, 0.04961832061068702, 0.04961832061068702, 0.05152671755725191, 0.25, 0.1717557251908397, 0.04389312977099236, 0.03816793893129771, 0.03625954198473282, 0.03435114503816794, 0.03625954198473282, 0.03435114503816794, 0.03435114503816794, 0.03435114503816794, 0.03435114503816794, 0.03435114503816794, 0.03625954198473282, 0.03435114503816794, 0.03435114503816794, 0.03435114503816794, 0.898854961832061, 0.8912213740458015, 0.03435114503816794, 0.03625954198473282, 0.03816793893129771, 0.03625954198473282, 0.03625954198473282, 0.03244274809160305, 0.030534351145038167, 0.030534351145038167, 0.026717557251908396, 0.026717557251908396, 0.02862595419847328, 0.02480916030534351, 0.9255725190839694, 0.5648854961832062, 0.061068702290076333, 0.02480916030534351, 0.02099236641221374, 0.02099236641221374, 0.019083969465648856, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.9217557251908397, 0.05343511450381679, 0.019083969465648856, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.02099236641221374, 0.022900763358778626, 0.022900763358778626, 0.02480916030534351, 0.02480916030534351, 0.02480916030534351, 0.02480916030534351, 0.026717557251908396, 0.02862595419847328, 0.030534351145038167, 0.12404580152671756, 0.9255725190839694, 0.11450381679389313, 0.05725190839694656, 0.061068702290076333, 0.0648854961832061, 0.0648854961832061, 0.06297709923664122, 0.06297709923664122, 0.06297709923664122, 0.0648854961832061, 0.06679389312977099, 0.07061068702290077, 0.07251908396946564, 0.07633587786259542, 0.08969465648854962, 0.18129770992366412, 0.22519083969465647, 0.3549618320610687, 0.49236641221374045, 0.5916030534351145, 0.6736641221374046], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAS_7.gap.json b/pfam_gap_rates/PAS_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1778c808d3dc11d6909dcee9d39b5e4e3d8aeff5
--- /dev/null
+++ b/pfam_gap_rates/PAS_7.gap.json
@@ -0,0 +1 @@
+{"family": "PAS_7", "n_seqs": 1310, "length": 123, "gap_rates": [0.22366412213740458, 0.11297709923664122, 0.07633587786259542, 0.04045801526717557, 0.028244274809160305, 0.016793893129770993, 0.01603053435114504, 0.013740458015267175, 0.012213740458015267, 0.009923664122137405, 0.00916030534351145, 0.009923664122137405, 0.011450381679389313, 0.008396946564885497, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.0061068702290076335, 0.0061068702290076335, 0.0061068702290076335, 0.0061068702290076335, 0.0061068702290076335, 0.0061068702290076335, 0.007633587786259542, 0.0061068702290076335, 0.008396946564885497, 0.008396946564885497, 0.007633587786259542, 0.00916030534351145, 0.00916030534351145, 0.011450381679389313, 0.013740458015267175, 0.01450381679389313, 0.0183206106870229, 0.11755725190839694, 0.01984732824427481, 0.012213740458015267, 0.011450381679389313, 0.013740458015267175, 0.017557251908396947, 0.00916030534351145, 0.01603053435114504, 0.00916030534351145, 0.011450381679389313, 0.012213740458015267, 0.01603053435114504, 0.01603053435114504, 0.06412213740458016, 0.0633587786259542, 0.0366412213740458, 0.03435114503816794, 0.030534351145038167, 0.04122137404580153, 0.04732824427480916, 0.8267175572519084, 0.6618320610687023, 0.2648854961832061, 0.15648854961832062, 0.11145038167938931, 0.9404580152671755, 0.09770992366412214, 0.07938931297709924, 0.06717557251908397, 0.061068702290076333, 0.06793893129770992, 0.05725190839694656, 0.051908396946564885, 0.05114503816793893, 0.0450381679389313, 0.15267175572519084, 0.13129770992366413, 0.09541984732824428, 0.07251908396946564, 0.05343511450381679, 0.9152671755725191, 0.0549618320610687, 0.031297709923664124, 0.028244274809160305, 0.022900763358778626, 0.024427480916030534, 0.020610687022900764, 0.016793893129770993, 0.01603053435114504, 0.035114503816793895, 0.02366412213740458, 0.012977099236641221, 0.00916030534351145, 0.011450381679389313, 0.009923664122137405, 0.008396946564885497, 0.008396946564885497, 0.008396946564885497, 0.008396946564885497, 0.008396946564885497, 0.008396946564885497, 0.008396946564885497, 0.008396946564885497, 0.008396946564885497, 0.9244274809160306, 0.9366412213740458, 0.9312977099236641, 0.9206106870229007, 0.008396946564885497, 0.010687022900763359, 0.011450381679389313, 0.009923664122137405, 0.010687022900763359, 0.009923664122137405, 0.009923664122137405, 0.010687022900763359, 0.012213740458015267, 0.01450381679389313, 0.01603053435114504, 0.016793893129770993, 0.0183206106870229, 0.019083969465648856, 0.024427480916030534, 0.0366412213740458, 0.08625954198473282, 0.17022900763358778, 0.27404580152671754, 0.8099236641221375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAS_8.gap.json b/pfam_gap_rates/PAS_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49b1e3c0ac878680206c74d3ed5f00a484cef6ff
--- /dev/null
+++ b/pfam_gap_rates/PAS_8.gap.json
@@ -0,0 +1 @@
+{"family": "PAS_8", "n_seqs": 3642, "length": 77, "gap_rates": [0.7265238879736409, 0.4379461834157057, 0.2775947281713344, 0.1985172981878089, 0.1243822075782537, 0.07331136738056013, 0.04969796814936848, 0.036792970895112576, 0.030203185063152116, 0.022515101592531575, 0.016199890170236132, 0.012081274025260845, 0.008511806699615597, 0.0054914881933003845, 0.004393190554640308, 0.019220208676551345, 0.9047226798462383, 0.9272377814387699, 0.9179022515101593, 0.900054914881933, 0.004667764964305327, 0.023613399231191653, 0.943163097199341, 0.6202635914332785, 0.07880285557386052, 0.11257550796265788, 0.06672158154859967, 0.8822075782537068, 0.929159802306425, 0.9168039538714992, 0.7957166392092258, 0.2701812191103789, 0.001098297638660077, 0.0005491488193300384, 0.0, 0.0, 0.0002745744096650192, 0.0005491488193300384, 0.001098297638660077, 0.0016474464579901153, 0.004118616144975288, 0.008786381109280615, 0.012355848434925865, 0.018396485447556288, 0.043382756727073035, 0.24217462932454695, 0.21801208127402527, 0.8959362987369577, 0.5420098846787479, 0.4247666117517847, 0.43931905546403077, 0.18066996155958265, 0.17325645249862712, 0.17984623833058758, 0.22899505766062603, 0.25343218012081276, 0.2699066447007139, 0.3901702361339923, 0.9360241625480505, 0.8539264140582098, 0.41652937946183416, 0.428061504667765, 0.45799011532125206, 0.48819330038440417, 0.5233388248215266, 0.5664470071389347, 0.6026908292147172, 0.6422295442064799, 0.6831411312465678, 0.7257001647446458, 0.7611202635914333, 0.928610653487095, 0.8509060955518946, 0.8758923668314114, 0.8989566172432729, 0.9173531026908293, 0.942888522789676], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PCDO_beta_N.gap.json b/pfam_gap_rates/PCDO_beta_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aee0b70eded0cf7f2434eb13b61548d108ec481a
--- /dev/null
+++ b/pfam_gap_rates/PCDO_beta_N.gap.json
@@ -0,0 +1 @@
+{"family": "PCDO_beta_N", "n_seqs": 189, "length": 35, "gap_rates": [0.6666666666666666, 0.3968253968253968, 0.2857142857142857, 0.20634920634920634, 0.1111111111111111, 0.8571428571428571, 0.05291005291005291, 0.042328042328042326, 0.042328042328042326, 0.026455026455026454, 0.021164021164021163, 0.005291005291005291, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.021164021164021163, 0.037037037037037035, 0.07936507936507936, 0.18518518518518517, 0.4074074074074074], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PCuAC.gap.json b/pfam_gap_rates/PCuAC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b180b96fde236bb483a2ffaadd911e7ac3555425
--- /dev/null
+++ b/pfam_gap_rates/PCuAC.gap.json
@@ -0,0 +1 @@
+{"family": "PCuAC", "n_seqs": 696, "length": 113, "gap_rates": [0.41810344827586204, 0.2629310344827586, 0.15229885057471265, 0.11637931034482758, 0.10201149425287356, 0.09339080459770115, 0.09195402298850575, 0.09051724137931035, 0.1939655172413793, 0.17385057471264367, 0.06321839080459771, 0.05028735632183908, 0.04454022988505747, 0.04597701149425287, 0.031609195402298854, 0.028735632183908046, 0.027298850574712645, 0.02442528735632184, 0.022988505747126436, 0.021551724137931036, 0.017241379310344827, 0.015804597701149427, 0.08189655172413793, 0.10632183908045977, 0.04310344827586207, 0.028735632183908046, 0.08620689655172414, 0.02442528735632184, 0.015804597701149427, 0.015804597701149427, 0.015804597701149427, 0.015804597701149427, 0.015804597701149427, 0.015804597701149427, 0.015804597701149427, 0.015804597701149427, 0.017241379310344827, 0.015804597701149427, 0.035919540229885055, 0.015804597701149427, 0.015804597701149427, 0.017241379310344827, 0.01293103448275862, 0.011494252873563218, 0.010057471264367816, 0.008620689655172414, 0.7600574712643678, 0.011494252873563218, 0.01293103448275862, 0.021551724137931036, 0.09770114942528736, 0.9123563218390804, 0.3031609195402299, 0.04597701149425287, 0.033045977011494254, 0.9109195402298851, 0.08189655172413793, 0.06321839080459771, 0.01867816091954023, 0.011494252873563218, 0.011494252873563218, 0.01293103448275862, 0.010057471264367816, 0.021551724137931036, 0.646551724137931, 0.01293103448275862, 0.007183908045977011, 0.007183908045977011, 0.004310344827586207, 0.005747126436781609, 0.007183908045977011, 0.004310344827586207, 0.005747126436781609, 0.008620689655172414, 0.005747126436781609, 0.011494252873563218, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.007183908045977011, 0.007183908045977011, 0.005747126436781609, 0.007183908045977011, 0.005747126436781609, 0.005747126436781609, 0.010057471264367816, 0.005747126436781609, 0.008620689655172414, 0.010057471264367816, 0.008620689655172414, 0.035919540229885055, 0.021551724137931036, 0.015804597701149427, 0.014367816091954023, 0.011494252873563218, 0.01293103448275862, 0.010057471264367816, 0.010057471264367816, 0.010057471264367816, 0.010057471264367816, 0.011494252873563218, 0.01293103448275862, 0.01293103448275862, 0.014367816091954023, 0.015804597701149427, 0.01867816091954023, 0.028735632183908046, 0.06465517241379311, 0.12643678160919541, 0.1882183908045977, 0.3333333333333333, 0.5474137931034483], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PDDEXK_3.gap.json b/pfam_gap_rates/PDDEXK_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..469479de9074827840ba88f8c3f74dc6cf6c1e7d
--- /dev/null
+++ b/pfam_gap_rates/PDDEXK_3.gap.json
@@ -0,0 +1 @@
+{"family": "PDDEXK_3", "n_seqs": 604, "length": 123, "gap_rates": [0.9122516556291391, 0.31788079470198677, 0.19701986754966888, 0.152317880794702, 0.1490066225165563, 0.14403973509933773, 0.14072847682119205, 0.13245033112582782, 0.12748344370860928, 0.12582781456953643, 0.12086092715231789, 0.11754966887417219, 0.11754966887417219, 0.11754966887417219, 0.11754966887417219, 0.11754966887417219, 0.11920529801324503, 0.11589403973509933, 0.11589403973509933, 0.11589403973509933, 0.11589403973509933, 0.11423841059602649, 0.11423841059602649, 0.11092715231788079, 0.11092715231788079, 0.11092715231788079, 0.11092715231788079, 0.10927152317880795, 0.1076158940397351, 0.1076158940397351, 0.10430463576158941, 0.10430463576158941, 0.10430463576158941, 0.10596026490066225, 0.10430463576158941, 0.10430463576158941, 0.10430463576158941, 0.10099337748344371, 0.10099337748344371, 0.10596026490066225, 0.1076158940397351, 0.10927152317880795, 0.11092715231788079, 0.10927152317880795, 0.1076158940397351, 0.10596026490066225, 0.1076158940397351, 0.10264900662251655, 0.1076158940397351, 0.13410596026490065, 0.11589403973509933, 0.08278145695364239, 0.07947019867549669, 0.07450331125827815, 0.08278145695364239, 0.08443708609271523, 0.08112582781456953, 0.056291390728476824, 0.057947019867549666, 0.5198675496688742, 0.057947019867549666, 0.046357615894039736, 0.04470198675496689, 0.04470198675496689, 0.04304635761589404, 0.03642384105960265, 0.0347682119205298, 0.9155629139072847, 0.9205298013245033, 0.9089403973509934, 0.0380794701986755, 0.03642384105960265, 0.0380794701986755, 0.0380794701986755, 0.0347682119205298, 0.03642384105960265, 0.03642384105960265, 0.03642384105960265, 0.03642384105960265, 0.03642384105960265, 0.9420529801324503, 0.9288079470198676, 0.0380794701986755, 0.0380794701986755, 0.039735099337748346, 0.039735099337748346, 0.0380794701986755, 0.03642384105960265, 0.041390728476821195, 0.0347682119205298, 0.0347682119205298, 0.0347682119205298, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.04304635761589404, 0.04304635761589404, 0.04470198675496689, 0.046357615894039736, 0.04966887417218543, 0.052980132450331126, 0.057947019867549666, 0.059602649006622516, 0.059602649006622516, 0.402317880794702, 0.4056291390728477, 0.2632450331125828, 0.28311258278145696, 0.33278145695364236, 0.4288079470198676, 0.4586092715231788, 0.48509933774834435, 0.5413907284768212, 0.7466887417218543], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PDDEXK_6.gap.json b/pfam_gap_rates/PDDEXK_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..327e12946f08e66236398cbd0862d4f166367f81
--- /dev/null
+++ b/pfam_gap_rates/PDDEXK_6.gap.json
@@ -0,0 +1 @@
+{"family": "PDDEXK_6", "n_seqs": 346, "length": 254, "gap_rates": [0.9479768786127167, 0.49421965317919075, 0.430635838150289, 0.4161849710982659, 0.41040462427745666, 0.3930635838150289, 0.3901734104046243, 0.3901734104046243, 0.3901734104046243, 0.3901734104046243, 0.3901734104046243, 0.3872832369942196, 0.3872832369942196, 0.3901734104046243, 0.3959537572254335, 0.3959537572254335, 0.3930635838150289, 0.4161849710982659, 0.9421965317919075, 0.47109826589595377, 0.615606936416185, 0.6878612716763006, 0.7803468208092486, 0.8497109826589595, 0.9248554913294798, 0.9479768786127167, 0.8930635838150289, 0.8265895953757225, 0.7196531791907514, 0.6358381502890174, 0.6098265895953757, 0.47398843930635837, 0.6011560693641619, 0.569364161849711, 0.546242774566474, 0.41329479768786126, 0.6820809248554913, 0.8959537572254336, 0.9219653179190751, 0.8497109826589595, 0.6040462427745664, 0.3583815028901734, 0.36416184971098264, 0.3439306358381503, 0.3352601156069364, 0.33236994219653176, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PDZ_2.gap.json b/pfam_gap_rates/PDZ_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3041eb773f1ef0e427a607cab77cc0e5198a0c1a
--- /dev/null
+++ b/pfam_gap_rates/PDZ_2.gap.json
@@ -0,0 +1 @@
+{"family": "PDZ_2", "n_seqs": 5000, "length": 101, "gap_rates": [0.7238, 0.521, 0.4318, 0.3968, 0.3902, 0.3858, 0.3754, 0.3694, 0.3596, 0.3458, 0.3368, 0.2992, 0.6092, 0.6258, 0.6558, 0.6802, 0.735, 0.9258, 0.9424, 0.9476, 0.9368, 0.894, 0.7272, 0.67, 0.6356, 0.6174, 0.6004, 0.4376, 0.3606, 0.1382, 0.1082, 0.0776, 0.0688, 0.0628, 0.0504, 0.0396, 0.0332, 0.0232, 0.0142, 0.0204, 0.012, 0.0112, 0.0072, 0.0036, 0.0026, 0.0582, 0.0006, 0.0006, 0.0004, 0.0002, 0.0002, 0.0, 0.0, 0.0002, 0.0002, 0.0002, 0.0, 0.0002, 0.0004, 0.0006, 0.0004, 0.943, 0.1002, 0.0114, 0.0074, 0.0078, 0.007, 0.0074, 0.0118, 0.9488, 0.0176, 0.0184, 0.0154, 0.039, 0.8918, 0.7972, 0.0518, 0.0454, 0.0436, 0.0426, 0.0412, 0.0404, 0.0396, 0.039, 0.04, 0.0394, 0.0422, 0.0448, 0.05, 0.0578, 0.065, 0.074, 0.0888, 0.116, 0.1526, 0.1834, 0.21, 0.2598, 0.3304, 0.488, 0.699], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEPcase.gap.json b/pfam_gap_rates/PEPcase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab6ab5801562f462d8027695f00cd909863a9a6e
--- /dev/null
+++ b/pfam_gap_rates/PEPcase.gap.json
@@ -0,0 +1 @@
+{"family": "PEPcase", "n_seqs": 1221, "length": 859, "gap_rates": [0.9443079443079443, 0.49713349713349714, 0.33415233415233414, 0.27682227682227684, 0.26371826371826373, 0.2596232596232596, 0.2596232596232596, 0.2588042588042588, 0.2588042588042588, 0.2588042588042588, 0.2588042588042588, 0.257985257985258, 0.257985257985258, 0.257985257985258, 0.257985257985258, 0.2588042588042588, 0.2588042588042588, 0.2588042588042588, 0.2596232596232596, 0.2596232596232596, 0.2596232596232596, 0.2588042588042588, 0.257985257985258, 0.257985257985258, 0.2588042588042588, 0.2596232596232596, 0.2596232596232596, 0.2596232596232596, 0.2588042588042588, 0.2596232596232596, 0.2588042588042588, 0.2596232596232596, 0.2596232596232596, 0.2628992628992629, 0.266994266994267, 0.26863226863226863, 0.4144144144144144, 0.36609336609336607, 0.34725634725634724, 0.3415233415233415, 0.33906633906633904, 0.3366093366093366, 0.3333333333333333, 0.32678132678132676, 0.9295659295659295, 0.9344799344799345, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PET.gap.json b/pfam_gap_rates/PET.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0bd9ee078826e6de949649a33843807a05135e4a
--- /dev/null
+++ b/pfam_gap_rates/PET.gap.json
@@ -0,0 +1 @@
+{"family": "PET", "n_seqs": 272, "length": 86, "gap_rates": [0.5294117647058824, 0.22794117647058823, 0.19117647058823528, 0.15073529411764705, 0.15073529411764705, 0.15073529411764705, 0.14705882352941177, 0.14705882352941177, 0.14338235294117646, 0.21323529411764705, 0.13602941176470587, 0.125, 0.1213235294117647, 0.09558823529411764, 0.0625, 0.0625, 0.0625, 0.0625, 0.058823529411764705, 0.0625, 0.0625, 0.0625, 0.0625, 0.0661764705882353, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.0625, 0.0661764705882353, 0.0661764705882353, 0.058823529411764705, 0.051470588235294115, 0.04411764705882353, 0.03676470588235294, 0.03676470588235294, 0.03676470588235294, 0.022058823529411766, 0.01838235294117647, 0.014705882352941176, 0.011029411764705883, 0.011029411764705883, 0.011029411764705883, 0.011029411764705883, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.014705882352941176, 0.014705882352941176, 0.022058823529411766, 0.022058823529411766, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.9117647058823529, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.025735294117647058, 0.025735294117647058, 0.025735294117647058, 0.025735294117647058, 0.025735294117647058, 0.029411764705882353, 0.029411764705882353, 0.04779411764705882, 0.05514705882352941, 0.04044117647058824, 0.04411764705882353, 0.051470588235294115, 0.0661764705882353, 0.1801470588235294, 0.4264705882352941], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PFK.gap.json b/pfam_gap_rates/PFK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a0a9dfe22680ecbcbc87a44d3cd3ddef3532f83
--- /dev/null
+++ b/pfam_gap_rates/PFK.gap.json
@@ -0,0 +1 @@
+{"family": "PFK", "n_seqs": 3748, "length": 393, "gap_rates": [0.45597652081109924, 0.19797225186766276, 0.1443436499466382, 0.11979722518676628, 0.11339381003201708, 0.08004268943436499, 0.07924226254002134, 0.07897545357524013, 0.0784418356456777, 0.0784418356456777, 0.07790821771611527, 0.07764140875133405, 0.07604055496264675, 0.06670224119530416, 0.06670224119530416, 0.06670224119530416, 0.06643543223052295, 0.06590181430096051, 0.06563500533617929, 0.06563500533617929, 0.06563500533617929, 0.06510138740661686, 0.06510138740661686, 0.06456776947705443, 0.06456776947705443, 0.06910352187833511, 0.06776947705442903, 0.064034151547492, 0.06296691568836713, 0.8025613660618997, 0.6491462113127001, 0.06056563500533618, 0.05869797225186766, 0.9234258271077909, 0.05736392742796158, 0.05656350053361793, 0.05656350053361793, 0.05629669156883671, 0.0576307363927428, 0.05496264674493063, 0.05256136606189968, 0.05256136606189968, 0.052027748132337244, 0.05176093916755603, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PHD.gap.json b/pfam_gap_rates/PHD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8375fe6a8aeff69e71e4589ce79789b52acf7062
--- /dev/null
+++ b/pfam_gap_rates/PHD.gap.json
@@ -0,0 +1 @@
+{"family": "PHD", "n_seqs": 5000, "length": 59, "gap_rates": [0.5402, 0.0554, 0.3152, 0.05, 0.0426, 0.044, 0.044, 0.8922, 0.931, 0.8022, 0.6352, 0.2426, 0.1828, 0.166, 0.0088, 0.007, 0.0062, 0.0018, 0.001, 0.0002, 0.0002, 0.0002, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0362, 0.0402, 0.5056, 0.4676, 0.066, 0.0386, 0.043, 0.0756, 0.2306, 0.8864, 0.95, 0.934, 0.8046, 0.013, 0.009, 0.0098, 0.0098, 0.0108, 0.0254, 0.03, 0.051, 0.344, 0.929], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHD_4.gap.json b/pfam_gap_rates/PHD_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00d7d5ad7c773ee6e6cb8494449047d0dfc17bd7
--- /dev/null
+++ b/pfam_gap_rates/PHD_4.gap.json
@@ -0,0 +1 @@
+{"family": "PHD_4", "n_seqs": 121, "length": 78, "gap_rates": [0.32231404958677684, 0.30578512396694213, 0.2809917355371901, 0.2066115702479339, 0.04132231404958678, 0.008264462809917356, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4628099173553719, 0.5537190082644629, 0.5371900826446281, 0.8347107438016529, 0.8429752066115702, 0.9173553719008265, 0.9173553719008265, 0.8429752066115702, 0.8264462809917356, 0.5041322314049587, 0.4214876033057851, 0.03305785123966942, 0.03305785123966942, 0.01652892561983471, 0.01652892561983471, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.48760330578512395, 0.8512396694214877, 0.9256198347107438, 0.9173553719008265, 0.8429752066115702, 0.30578512396694213, 0.0743801652892562, 0.03305785123966942, 0.04132231404958678, 0.03305785123966942, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.4049586776859504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHF5.gap.json b/pfam_gap_rates/PHF5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0259c7d31ce905837954cb6cb11397f54234669
--- /dev/null
+++ b/pfam_gap_rates/PHF5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PHTB1_N.gap.json b/pfam_gap_rates/PHTB1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1366532b1e8e46b0bcd8711d4aae019d9232e9d1
--- /dev/null
+++ b/pfam_gap_rates/PHTB1_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PHY.gap.json b/pfam_gap_rates/PHY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f274ae67dd0a97bbd1d861fdfaf0ba22b996a0e2
--- /dev/null
+++ b/pfam_gap_rates/PHY.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PI-PLC-Y.gap.json b/pfam_gap_rates/PI-PLC-Y.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b80a97a5b67f27380849951896f925df2554a3f
--- /dev/null
+++ b/pfam_gap_rates/PI-PLC-Y.gap.json
@@ -0,0 +1 @@
+{"family": "PI-PLC-Y", "n_seqs": 1188, "length": 126, "gap_rates": [0.4292929292929293, 0.3947811447811448, 0.38552188552188554, 0.382996632996633, 0.3712121212121212, 0.3661616161616162, 0.3493265993265993, 0.3425925925925926, 0.3367003367003367, 0.33164983164983164, 0.32575757575757575, 0.3223905723905724, 0.3164983164983165, 0.3148148148148148, 0.3552188552188552, 0.33585858585858586, 0.31734006734006737, 0.3223905723905724, 0.39814814814814814, 0.6750841750841751, 0.9452861952861953, 0.92003367003367, 0.4612794612794613, 0.3291245791245791, 0.3282828282828283, 0.41835016835016836, 0.2803030303030303, 0.9452861952861953, 0.17592592592592593, 0.1473063973063973, 0.11784511784511785, 0.08838383838383838, 0.0765993265993266, 0.07491582491582492, 0.07407407407407407, 0.07323232323232323, 0.07323232323232323, 0.0723905723905724, 0.06986531986531987, 0.06902356902356903, 0.0664983164983165, 0.06734006734006734, 0.0664983164983165, 0.0707070707070707, 0.06986531986531987, 0.08333333333333333, 0.21043771043771045, 0.9318181818181818, 0.281986531986532, 0.15993265993265993, 0.058922558922558925, 0.8451178451178452, 0.9351851851851852, 0.8594276094276094, 0.8316498316498316, 0.05808080808080808, 0.06313131313131314, 0.05808080808080808, 0.05134680134680135, 0.050505050505050504, 0.04882154882154882, 0.04882154882154882, 0.047979797979797977, 0.047979797979797977, 0.047979797979797977, 0.047979797979797977, 0.047979797979797977, 0.047979797979797977, 0.047979797979797977, 0.046296296296296294, 0.04713804713804714, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.04461279461279461, 0.04377104377104377, 0.04377104377104377, 0.04292929292929293, 0.041245791245791245, 0.03872053872053872, 0.0361952861952862, 0.037037037037037035, 0.03787878787878788, 0.03787878787878788, 0.03787878787878788, 0.03787878787878788, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.027777777777777776, 0.031144781144781145, 0.03198653198653199, 0.030303030303030304, 0.031144781144781145, 0.030303030303030304, 0.030303030303030304, 0.027777777777777776, 0.026094276094276093, 0.022727272727272728, 0.02356902356902357, 0.026936026936026935, 0.02441077441077441, 0.02441077441077441, 0.02441077441077441, 0.02441077441077441, 0.02441077441077441, 0.025252525252525252, 0.02441077441077441, 0.026094276094276093, 0.026094276094276093, 0.9234006734006734, 0.030303030303030304, 0.16666666666666666, 0.17087542087542087, 0.045454545454545456, 0.031144781144781145, 0.030303030303030304, 0.031144781144781145, 0.034511784511784514, 0.034511784511784514, 0.03535353535353535, 0.03872053872053872, 0.050505050505050504, 0.09175084175084175, 0.2609427609427609], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PIP5K.gap.json b/pfam_gap_rates/PIP5K.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e46987e28729c7aa4a491d419d04668f79410af8
--- /dev/null
+++ b/pfam_gap_rates/PIP5K.gap.json
@@ -0,0 +1 @@
+{"family": "PIP5K", "n_seqs": 2245, "length": 374, "gap_rates": [0.8044543429844098, 0.710913140311804, 0.6712694877505568, 0.6489977728285078, 0.6267260579064587, 0.6102449888641426, 0.5915367483296213, 0.512694877505568, 0.34832962138084633, 0.3256124721603563, 0.3167037861915368, 0.31625835189309576, 0.31135857461024496, 0.3086859688195991, 0.3051224944320713, 0.3046770601336303, 0.2984409799554566, 0.29888641425389756, 0.29665924276169264, 0.29665924276169264, 0.2971046770601336, 0.29977728285077954, 0.2935412026726058, 0.29086859688195993, 0.28997772828507795, 0.289532293986637, 0.289532293986637, 0.288641425389755, 0.2873051224944321, 0.2873051224944321, 0.2864142538975501, 0.28596881959910914, 0.2855233853006682, 0.28507795100222716, 0.28418708240534524, 0.2846325167037862, 0.2873051224944321, 0.2868596881959911, 0.28775055679287304, 0.2873051224944321, 0.28596881959910914, 0.28596881959910914, 0.2864142538975501, 0.2864142538975501, 0.28596881959910914, 0.28596881959910914, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PLA2G12.gap.json b/pfam_gap_rates/PLA2G12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc585c4f268a4f7a3cc331781e0561af1b349b39
--- /dev/null
+++ b/pfam_gap_rates/PLA2G12.gap.json
@@ -0,0 +1 @@
+{"family": "PLA2G12", "n_seqs": 104, "length": 194, "gap_rates": [0.9038461538461539, 0.9038461538461539, 0.8846153846153846, 0.875, 0.8557692307692307, 0.8173076923076923, 0.7980769230769231, 0.7788461538461539, 0.7596153846153846, 0.7596153846153846, 0.6730769230769231, 0.5865384615384616, 0.5288461538461539, 0.875, 0.875, 0.875, 0.875, 0.5096153846153846, 0.5, 0.5, 0.49038461538461536, 0.49038461538461536, 0.49038461538461536, 0.49038461538461536, 0.49038461538461536, 0.6826923076923077, 0.6730769230769231, 0.4807692307692308, 0.4519230769230769, 0.4423076923076923, 0.4423076923076923, 0.4326923076923077, 0.4326923076923077, 0.4326923076923077, 0.41346153846153844, 0.41346153846153844, 0.41346153846153844, 0.41346153846153844, 0.41346153846153844, 0.40384615384615385, 0.3942307692307692, 0.3942307692307692, 0.38461538461538464, 0.375, 0.375, 0.375, 0.36538461538461536, 0.34615384615384615, 0.5288461538461539, 0.5288461538461539, 0.5192307692307693, 0.34615384615384615, 0.34615384615384615, 0.4807692307692308, 0.4807692307692308, 0.41346153846153844, 0.25961538461538464, 0.2403846153846154, 0.23076923076923078, 0.20192307692307693, 0.18269230769230768, 0.18269230769230768, 0.18269230769230768, 0.15384615384615385, 0.15384615384615385, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.3269230769230769, 0.16346153846153846, 0.15384615384615385, 0.15384615384615385, 0.17307692307692307, 0.20192307692307693, 0.20192307692307693, 0.15384615384615385, 0.14423076923076922, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.4230769230769231, 0.4326923076923077, 0.15384615384615385, 0.14423076923076922, 0.11538461538461539, 0.7980769230769231, 0.8365384615384616, 0.8173076923076923, 0.7788461538461539, 0.11538461538461539, 0.1346153846153846, 0.20192307692307693, 0.9326923076923077, 0.9326923076923077, 0.9038461538461539, 0.17307692307692307, 0.16346153846153846, 0.9134615384615384, 0.11538461538461539, 0.1346153846153846, 0.125, 0.8365384615384616, 0.8076923076923077, 0.0673076923076923, 0.057692307692307696, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.04807692307692308, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.038461538461538464, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.057692307692307696, 0.09615384615384616, 0.1346153846153846, 0.10576923076923077, 0.1346153846153846, 0.18269230769230768, 0.22115384615384615, 0.25, 0.23076923076923078, 0.15384615384615385, 0.14423076923076922, 0.11538461538461539, 0.125, 0.09615384615384616, 0.9134615384615384, 0.10576923076923077, 0.10576923076923077, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.1346153846153846, 0.125, 0.125, 0.125, 0.125, 0.125, 0.1346153846153846, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.14423076923076922, 0.16346153846153846, 0.15384615384615385, 0.17307692307692307, 0.19230769230769232, 0.25, 0.3173076923076923, 0.40384615384615385, 0.47115384615384615, 0.5480769230769231, 0.6442307692307693, 0.7019230769230769, 0.7115384615384616], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PMD.gap.json b/pfam_gap_rates/PMD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa92a069c5fe89aee32b7a2874034f3ed8053d7b
--- /dev/null
+++ b/pfam_gap_rates/PMD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PMT_2.gap.json b/pfam_gap_rates/PMT_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d855176b153d8942c239544897b070c55981f8e1
--- /dev/null
+++ b/pfam_gap_rates/PMT_2.gap.json
@@ -0,0 +1 @@
+{"family": "PMT_2", "n_seqs": 5000, "length": 180, "gap_rates": [0.7848, 0.5434, 0.4234, 0.3146, 0.2876, 0.2658, 0.2518, 0.2452, 0.2214, 0.2096, 0.2014, 0.1894, 0.1808, 0.1734, 0.1694, 0.1642, 0.2112, 0.1672, 0.1562, 0.8574, 0.134, 0.1154, 0.089, 0.0736, 0.059, 0.0426, 0.0354, 0.0326, 0.0298, 0.0256, 0.0238, 0.0186, 0.0176, 0.015, 0.015, 0.0138, 0.0136, 0.0132, 0.0134, 0.013, 0.013, 0.0126, 0.0128, 0.0134, 0.0126, 0.0136, 0.0338, 0.0348, 0.0204, 0.731, 0.0202, 0.0186, 0.0172, 0.0154, 0.0144, 0.0126, 0.0122, 0.012, 0.012, 0.0128, 0.012, 0.012, 0.0124, 0.0152, 0.014, 0.0418, 0.0168, 0.0136, 0.0136, 0.013, 0.0136, 0.015, 0.8834, 0.033, 0.0162, 0.0156, 0.0496, 0.019, 0.0174, 0.019, 0.0162, 0.0148, 0.0144, 0.0142, 0.0148, 0.0142, 0.0148, 0.0164, 0.0164, 0.0168, 0.0182, 0.022, 0.0314, 0.049, 0.0654, 0.0676, 0.0596, 0.887, 0.9316, 0.9036, 0.8702, 0.0516, 0.0516, 0.0772, 0.8898, 0.2036, 0.1688, 0.068, 0.0462, 0.9386, 0.897, 0.0376, 0.035, 0.0348, 0.0342, 0.0354, 0.0358, 0.0366, 0.0376, 0.0368, 0.037, 0.0372, 0.0366, 0.037, 0.0384, 0.038, 0.0376, 0.0378, 0.0382, 0.0382, 0.0384, 0.039, 0.0388, 0.1688, 0.0614, 0.0508, 0.0462, 0.75, 0.9122, 0.53, 0.0508, 0.0636, 0.0644, 0.0722, 0.0726, 0.6272, 0.8616, 0.9422, 0.9086, 0.7544, 0.4866, 0.1252, 0.1532, 0.7726, 0.1296, 0.1218, 0.1238, 0.1264, 0.9178, 0.136, 0.1374, 0.1424, 0.147, 0.1538, 0.6458, 0.1902, 0.1808, 0.1756, 0.1786, 0.1886, 0.2052, 0.2282, 0.267, 0.314, 0.402, 0.538, 0.6004, 0.6542, 0.7432, 0.8268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PNISR.gap.json b/pfam_gap_rates/PNISR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90b74d3ab29630e5d980b00353a57b41cce01080
--- /dev/null
+++ b/pfam_gap_rates/PNISR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PNKP-ligase_C.gap.json b/pfam_gap_rates/PNKP-ligase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76ac9dcf3b49624a79bb707267132f40417ef15f
--- /dev/null
+++ b/pfam_gap_rates/PNKP-ligase_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PNKP_ligase.gap.json b/pfam_gap_rates/PNKP_ligase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d4855e24bc64f6981b14cee004c5be112f3211b
--- /dev/null
+++ b/pfam_gap_rates/PNKP_ligase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PNRC.gap.json b/pfam_gap_rates/PNRC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70edd847e6c3d77b168fb77d64816cc4e2277304
--- /dev/null
+++ b/pfam_gap_rates/PNRC.gap.json
@@ -0,0 +1 @@
+{"family": "PNRC", "n_seqs": 189, "length": 85, "gap_rates": [0.7248677248677249, 0.13756613756613756, 0.015873015873015872, 0.005291005291005291, 0.005291005291005291, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2698412698412698, 0.25396825396825395, 0.19047619047619047, 0.1693121693121693, 0.19576719576719576, 0.17989417989417988, 0.1746031746031746, 0.15873015873015872, 0.19576719576719576, 0.26455026455026454, 0.26455026455026454, 0.2857142857142857, 0.328042328042328, 0.3862433862433862, 0.4126984126984127, 0.3968253968253968, 0.42857142857142855, 0.47619047619047616, 0.5132275132275133, 0.5555555555555556, 0.5767195767195767, 0.7037037037037037, 0.7037037037037037, 0.708994708994709, 0.7142857142857143, 0.7301587301587301, 0.7513227513227513, 0.7566137566137566, 0.7671957671957672, 0.7936507936507936, 0.8518518518518519, 0.9206349206349206, 0.8835978835978836, 0.7936507936507936, 0.7777777777777778, 0.7671957671957672, 0.7513227513227513, 0.7354497354497355, 0.7142857142857143, 0.708994708994709, 0.7037037037037037, 0.7037037037037037, 0.6931216931216931, 0.6031746031746031, 0.746031746031746, 0.6613756613756614, 0.582010582010582, 0.4656084656084656, 0.4126984126984127, 0.3862433862433862, 0.35978835978835977, 0.3492063492063492, 0.30687830687830686, 0.291005291005291, 0.291005291005291, 0.291005291005291, 0.291005291005291, 0.291005291005291, 0.291005291005291, 0.291005291005291, 0.291005291005291, 0.2962962962962963, 0.4021164021164021], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PPI_Ypi1.gap.json b/pfam_gap_rates/PPI_Ypi1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5970412f00fbb7465ca934e38dcb1db841d7fd02
--- /dev/null
+++ b/pfam_gap_rates/PPI_Ypi1.gap.json
@@ -0,0 +1 @@
+{"family": "PPI_Ypi1", "n_seqs": 314, "length": 70, "gap_rates": [0.6019108280254777, 0.5222929936305732, 0.49044585987261147, 0.47770700636942676, 0.48089171974522293, 0.4681528662420382, 0.910828025477707, 0.9394904458598726, 0.9490445859872612, 0.9171974522292994, 0.8885350318471338, 0.8407643312101911, 0.7866242038216561, 0.7547770700636943, 0.7070063694267515, 0.5923566878980892, 0.37261146496815284, 0.19745222929936307, 0.10191082802547771, 0.050955414012738856, 0.03184713375796178, 0.01910828025477707, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.03821656050955414, 0.03821656050955414, 0.01592356687898089, 0.01592356687898089, 0.012738853503184714, 0.0031847133757961785, 0.009554140127388535, 0.009554140127388535, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.009554140127388535, 0.028662420382165606, 0.044585987261146494, 0.04777070063694268, 0.04777070063694268, 0.04777070063694268, 0.04777070063694268, 0.041401273885350316, 0.04777070063694268, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.054140127388535034, 0.05732484076433121, 0.05732484076433121, 0.9426751592356688, 0.9490445859872612, 0.9490445859872612, 0.9426751592356688, 0.9426751592356688, 0.06050955414012739, 0.09872611464968153, 0.09554140127388536, 0.08917197452229299, 0.09554140127388536, 0.12101910828025478, 0.20382165605095542, 0.5668789808917197], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PQQ_3.gap.json b/pfam_gap_rates/PQQ_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58bba8b1508a0514f2e054f4a9e1f9ab26ac8ce8
--- /dev/null
+++ b/pfam_gap_rates/PQQ_3.gap.json
@@ -0,0 +1 @@
+{"family": "PQQ_3", "n_seqs": 869, "length": 54, "gap_rates": [0.334867663981588, 0.27502876869965476, 0.17721518987341772, 0.14384349827387802, 0.10356731875719218, 0.08975834292289989, 0.07019562715765247, 0.9182968929804373, 0.9424626006904487, 0.9344073647871116, 0.904487917146145, 0.04948216340621404, 0.05523590333716916, 0.05063291139240506, 0.05408515535097814, 0.9344073647871116, 0.8699654775604143, 0.039125431530494824, 0.03452243958573072, 0.07249712313003452, 0.020713463751438434, 0.01611047180667434, 0.0, 0.9182968929804373, 0.9424626006904487, 0.9493670886075949, 0.9355581127733027, 0.8653624856156502, 0.0, 0.0, 0.0, 0.9263521288837745, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011507479861910242, 0.01726121979286536, 0.9401611047180668, 0.9217491369390104, 0.07249712313003452, 0.023014959723820484, 0.024165707710011506, 0.026467203682393557, 0.028768699654775604, 0.0379746835443038, 0.05293440736478711, 0.14154200230149597, 0.2554660529344074, 0.4108170310701956, 0.5742232451093211], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRE_C2HC.gap.json b/pfam_gap_rates/PRE_C2HC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02da8d778677090803d24967db40bf4778e6fc1f
--- /dev/null
+++ b/pfam_gap_rates/PRE_C2HC.gap.json
@@ -0,0 +1 @@
+{"family": "PRE_C2HC", "n_seqs": 201, "length": 68, "gap_rates": [0.6467661691542289, 0.2935323383084577, 0.14925373134328357, 0.14427860696517414, 0.12935323383084577, 0.11940298507462686, 0.11442786069651742, 0.10945273631840796, 0.09950248756218906, 0.0945273631840796, 0.0845771144278607, 0.07960199004975124, 0.07462686567164178, 0.06965174129353234, 0.06467661691542288, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.06467661691542288, 0.05970149253731343, 0.04975124378109453, 0.04477611940298507, 0.39303482587064675, 0.19402985074626866, 0.03482587064676617, 0.03482587064676617, 0.03980099502487562, 0.029850746268656716, 0.024875621890547265, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.04975124378109453, 0.04477611940298507, 0.01990049751243781, 0.01990049751243781, 0.014925373134328358, 0.01990049751243781, 0.06965174129353234, 0.06965174129353234, 0.9253731343283582, 0.04477611940298507, 0.03482587064676617, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.03980099502487562, 0.04477611940298507, 0.04975124378109453, 0.04975124378109453, 0.05472636815920398, 0.06965174129353234, 0.07462686567164178, 0.07462686567164178, 0.07960199004975124, 0.07960199004975124, 0.0845771144278607, 0.0845771144278607, 0.0845771144278607, 0.08955223880597014, 0.208955223880597, 0.25870646766169153, 0.31343283582089554, 0.417910447761194, 0.6218905472636815, 0.7910447761194029], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRKCSH.gap.json b/pfam_gap_rates/PRKCSH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..139ebb7d349b3568322290f063347036d1fc8b29
--- /dev/null
+++ b/pfam_gap_rates/PRKCSH.gap.json
@@ -0,0 +1 @@
+{"family": "PRKCSH", "n_seqs": 461, "length": 129, "gap_rates": [0.596529284164859, 0.2017353579175705, 0.06073752711496746, 0.05856832971800434, 0.04772234273318872, 0.0455531453362256, 0.021691973969631236, 0.010845986984815618, 0.9414316702819957, 0.006507592190889371, 0.006507592190889371, 0.008676789587852495, 0.008676789587852495, 0.008676789587852495, 0.008676789587852495, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.006507592190889371, 0.004338394793926247, 0.004338394793926247, 0.004338394793926247, 0.004338394793926247, 0.004338394793926247, 0.0, 0.0, 0.0, 0.544468546637744, 0.6876355748373102, 0.720173535791757, 0.7440347071583514, 0.8373101952277657, 0.9327548806941431, 0.9436008676789588, 0.8590021691973969, 0.7765726681127982, 0.7245119305856833, 0.7071583514099783, 0.6290672451193059, 0.4945770065075922, 0.3297180043383948, 0.0737527114967462, 0.05422993492407809, 0.0455531453362256, 0.019522776572668113, 0.019522776572668113, 0.013015184381778741, 0.013015184381778741, 0.010845986984815618, 0.013015184381778741, 0.015184381778741865, 0.015184381778741865, 0.015184381778741865, 0.039045553145336226, 0.028199566160520606, 0.6919739696312365, 0.735357917570499, 0.8264642082429501, 0.8785249457700651, 0.913232104121475, 0.9457700650759219, 0.9219088937093276, 0.8980477223427332, 0.841648590021692, 0.7852494577006508, 0.7136659436008677, 0.6746203904555315, 0.33405639913232105, 0.3644251626898048, 0.27114967462039047, 0.2559652928416486, 0.2386117136659436, 0.19088937093275488, 0.17787418655097614, 0.17787418655097614, 0.1822125813449024, 0.18004338394793926, 0.1735357917570499, 0.18655097613882862, 0.2928416485900217, 0.2950108459869848, 0.29718004338394793, 0.2603036876355748, 0.7462039045553145, 0.7765726681127982, 0.8156182212581344, 0.8524945770065075, 0.8893709327548807, 0.89587852494577, 0.9045553145336226, 0.9219088937093276, 0.93058568329718, 0.9414316702819957, 0.9457700650759219, 0.9414316702819957, 0.9392624728850325, 0.9262472885032538, 0.9154013015184381, 0.8980477223427332, 0.8915401301518439, 0.8785249457700651, 0.8286334056399133, 0.7852494577006508, 0.7613882863340564, 0.6681127982646421, 0.37310195227765725, 0.3383947939262473, 0.2646420824295011, 0.21258134490238612, 0.1735357917570499, 0.12581344902386118, 0.1193058568329718, 0.12147505422993492, 0.1193058568329718, 0.10629067245119306, 0.10412147505422993, 0.10845986984815618, 0.10412147505422993, 0.10412147505422993, 0.10412147505422993, 0.10412147505422993, 0.10412147505422993, 0.10412147505422993, 0.10629067245119306, 0.11279826464208242, 0.10845986984815618, 0.11279826464208242, 0.11279826464208242, 0.11496746203904555], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRMT5.gap.json b/pfam_gap_rates/PRMT5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4907669c318c18cd0575f8b5a7b8b4dc976ff56
--- /dev/null
+++ b/pfam_gap_rates/PRMT5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PRT_C.gap.json b/pfam_gap_rates/PRT_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fab3e6223779b6ca2b96d26696e0699ae4940b24
--- /dev/null
+++ b/pfam_gap_rates/PRT_C.gap.json
@@ -0,0 +1 @@
+{"family": "PRT_C", "n_seqs": 444, "length": 161, "gap_rates": [0.35585585585585583, 0.3108108108108108, 0.29954954954954954, 0.29504504504504503, 0.2927927927927928, 0.2882882882882883, 0.2882882882882883, 0.2882882882882883, 0.28603603603603606, 0.28378378378378377, 0.28153153153153154, 0.27927927927927926, 0.27702702702702703, 0.27702702702702703, 0.27702702702702703, 0.2747747747747748, 0.2747747747747748, 0.2725225225225225, 0.268018018018018, 0.268018018018018, 0.2635135135135135, 0.25675675675675674, 0.2545045045045045, 0.25, 0.9459459459459459, 0.25, 0.24549549549549549, 0.24324324324324326, 0.240990990990991, 0.240990990990991, 0.23873873873873874, 0.23648648648648649, 0.22522522522522523, 0.21396396396396397, 0.2072072072072072, 0.20495495495495494, 0.19369369369369369, 0.1891891891891892, 0.18468468468468469, 0.17567567567567569, 0.17567567567567569, 0.17567567567567569, 0.16891891891891891, 0.16891891891891891, 0.16666666666666666, 0.17342342342342343, 0.17117117117117117, 0.17567567567567569, 0.18243243243243243, 0.18243243243243243, 0.17117117117117117, 0.16666666666666666, 0.14864864864864866, 0.13963963963963963, 0.15090090090090091, 0.13963963963963963, 0.1373873873873874, 0.12612612612612611, 0.14189189189189189, 0.12837837837837837, 0.12162162162162163, 0.12387387387387387, 0.13288288288288289, 0.12162162162162163, 0.0990990990990991, 0.10135135135135136, 0.0990990990990991, 0.0945945945945946, 0.09234234234234234, 0.0945945945945946, 0.09684684684684684, 0.0945945945945946, 0.09234234234234234, 0.09234234234234234, 0.0945945945945946, 0.0990990990990991, 0.0990990990990991, 0.09684684684684684, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.0990990990990991, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.10135135135135136, 0.1036036036036036, 0.10135135135135136, 0.10135135135135136, 0.09684684684684684, 0.09684684684684684, 0.09684684684684684, 0.09684684684684684, 0.09684684684684684, 0.09684684684684684, 0.09684684684684684, 0.0945945945945946, 0.0945945945945946, 0.0945945945945946, 0.09234234234234234, 0.09234234234234234, 0.09234234234234234, 0.09234234234234234, 0.09234234234234234, 0.09234234234234234, 0.09234234234234234, 0.09009009009009009, 0.09009009009009009, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.06981981981981981, 0.06756756756756757, 0.07207207207207207, 0.07432432432432433, 0.08783783783783784, 0.08783783783783784, 0.08783783783783784, 0.09009009009009009, 0.0990990990990991, 0.16441441441441443, 0.0945945945945946, 0.09684684684684684, 0.0990990990990991, 0.10585585585585586, 0.9076576576576577, 0.11036036036036036, 0.10585585585585586, 0.10585585585585586, 0.9481981981981982, 0.9481981981981982, 0.9481981981981982, 0.1036036036036036, 0.1036036036036036, 0.11486486486486487, 0.10810810810810811, 0.10810810810810811, 0.11261261261261261, 0.11261261261261261, 0.11261261261261261, 0.11261261261261261, 0.11261261261261261, 0.11261261261261261, 0.13288288288288289, 0.1373873873873874, 0.19369369369369369, 0.21846846846846846, 0.24774774774774774, 0.2725225225225225, 0.3108108108108108], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSI_PSAK.gap.json b/pfam_gap_rates/PSI_PSAK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..574e254ddedfcab038be69c7e18f79689d56ca99
--- /dev/null
+++ b/pfam_gap_rates/PSI_PSAK.gap.json
@@ -0,0 +1 @@
+{"family": "PSI_PSAK", "n_seqs": 147, "length": 96, "gap_rates": [0.2585034013605442, 0.1360544217687075, 0.10204081632653061, 0.08163265306122448, 0.06802721088435375, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.05442176870748299, 0.05442176870748299, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.7006802721088435, 0.6938775510204082, 0.3333333333333333, 0.3197278911564626, 0.3197278911564626, 0.32653061224489793, 0.29931972789115646, 0.027210884353741496, 0.7346938775510204, 0.7414965986394558, 0.8639455782312925, 0.7414965986394558, 0.7278911564625851, 0.027210884353741496, 0.027210884353741496, 0.47619047619047616, 0.47619047619047616, 0.47619047619047616, 0.47619047619047616, 0.47619047619047616, 0.47619047619047616, 0.47619047619047616, 0.47619047619047616, 0.4897959183673469, 0.5918367346938775, 0.4897959183673469, 0.4897959183673469, 0.47619047619047616, 0.4897959183673469, 0.4897959183673469, 0.54421768707483, 0.46938775510204084, 0.7142857142857143, 0.7346938775510204, 0.54421768707483, 0.10884353741496598, 0.09523809523809523, 0.08163265306122448, 0.07482993197278912, 0.06802721088435375, 0.047619047619047616, 0.7414965986394558, 0.7687074829931972, 0.6054421768707483, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.034013605442176874, 0.027210884353741496, 0.027210884353741496, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.04081632653061224, 0.047619047619047616, 0.05442176870748299, 0.10204081632653061, 0.1292517006802721, 0.6802721088435374], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PS_Dcarbxylase.gap.json b/pfam_gap_rates/PS_Dcarbxylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5ad5eeff2c9c414c11d4d746b4855c6326591a7
--- /dev/null
+++ b/pfam_gap_rates/PS_Dcarbxylase.gap.json
@@ -0,0 +1 @@
+{"family": "PS_Dcarbxylase", "n_seqs": 2144, "length": 333, "gap_rates": [0.5009328358208955, 0.3316231343283582, 0.2462686567164179, 0.16371268656716417, 0.12406716417910447, 0.09934701492537314, 0.08815298507462686, 0.07742537313432836, 0.07276119402985075, 0.07229477611940298, 0.07182835820895522, 0.07462686567164178, 0.09421641791044776, 0.07462686567164178, 0.07042910447761194, 0.06949626865671642, 0.8572761194029851, 0.8078358208955224, 0.16744402985074627, 0.11753731343283583, 0.09188432835820895, 0.10401119402985075, 0.11240671641791045, 0.10727611940298508, 0.9416977611940298, 0.9169776119402985, 0.061567164179104475, 0.05830223880597015, 0.05783582089552239, 0.05783582089552239, 0.057369402985074626, 0.057369402985074626, 0.05643656716417911, 0.055970149253731345, 0.055970149253731345, 0.05457089552238806, 0.05550373134328358, 0.061567164179104475, 0.9249067164179104, 0.09981343283582089, 0.05783582089552239, 0.05317164179104478, 0.049906716417910446, 0.0480410447761194, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PTA_PTB.gap.json b/pfam_gap_rates/PTA_PTB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbd39c26903cdfb8d7ec0b9ca332d6dc3cd6797b
--- /dev/null
+++ b/pfam_gap_rates/PTA_PTB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PTCB-BRCT.gap.json b/pfam_gap_rates/PTCB-BRCT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a55228ca6f4354fd32568fd8bd0e1add3a65b99d
--- /dev/null
+++ b/pfam_gap_rates/PTCB-BRCT.gap.json
@@ -0,0 +1 @@
+{"family": "PTCB-BRCT", "n_seqs": 1407, "length": 70, "gap_rates": [0.5813788201847904, 0.3191186922530206, 0.22174840085287847, 0.20966595593461265, 0.1947405828002843, 0.1869225302061123, 0.1791044776119403, 0.16844349680170576, 0.1677327647476901, 0.15493958777540867, 0.1435678749111585, 0.12224591329068941, 0.9466950959488273, 0.8393745557924662, 0.07960199004975124, 0.06041222459132907, 0.052594171997157074, 0.042643923240938165, 0.03909026297085998, 0.028429282160625444, 0.026297085998578537, 0.02203269367448472, 0.01847903340440654, 0.017057569296375266, 0.01279317697228145, 0.011371712864250177, 0.010660980810234541, 0.010660980810234541, 0.010660980810234541, 0.008528784648187633, 0.007107320540156361, 0.007107320540156361, 0.005685856432125089, 0.8550106609808102, 0.0042643923240938165, 0.0042643923240938165, 0.0028429282160625444, 0.0035536602700781805, 0.0028429282160625444, 0.0028429282160625444, 0.0028429282160625444, 0.0028429282160625444, 0.004975124378109453, 0.9339019189765458, 0.9495380241648899, 0.9232409381663113, 0.012082444918265814, 0.01279317697228145, 0.01847903340440654, 0.021321961620469083, 0.02771855010660981, 0.030561478322672354, 0.03482587064676617, 0.03624733475479744, 0.03980099502487562, 0.0511727078891258, 0.06183368869936034, 0.06609808102345416, 0.06965174129353234, 0.07320540156361052, 0.07960199004975124, 0.8173418621179815, 0.09879175550817342, 0.10660980810234541, 0.10803127221037669, 0.10945273631840796, 0.11513859275053305, 0.11940298507462686, 0.12366737739872068, 0.13361762615493958], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTS_EIIA_2.gap.json b/pfam_gap_rates/PTS_EIIA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32fc1517e894f19795f2621bdf17932430f4196f
--- /dev/null
+++ b/pfam_gap_rates/PTS_EIIA_2.gap.json
@@ -0,0 +1 @@
+{"family": "PTS_EIIA_2", "n_seqs": 3506, "length": 157, "gap_rates": [0.9343981745579008, 0.437250427837992, 0.28978893325727323, 0.24928693667997717, 0.20707358813462637, 0.17655447803764973, 0.15573302909298345, 0.13690815744438106, 0.13063320022818026, 0.1215059897318882, 0.13205932686822588, 0.10239589275527666, 0.09440958357102111, 0.09697661152310325, 0.07900741585852823, 0.056759840273816316, 0.052481460353679406, 0.045636052481460354, 0.04249857387335995, 0.04021677124928694, 0.03650884198516828, 0.03451226468910439, 0.031660011409013124, 0.029948659440958356, 0.029092983456930975, 0.038505419281232175, 0.04763262977752424, 0.028237307472903594, 0.027096406160867084, 0.027096406160867084, 0.025955504848830576, 0.06217912150598973, 0.0387906446092413, 0.02567027952082145, 0.023673702224757558, 0.03593839132915003, 0.029948659440958356, 0.5362236166571591, 0.47832287507130633, 0.019965772960638905, 0.018824871648602397, 0.017969195664575013, 0.017683970336565887, 0.016828294352538506, 0.01654306902452938, 0.01540216771249287, 0.015687393040501995, 0.01540216771249287, 0.015687393040501995, 0.015972618368511125, 0.014831717056474614, 0.01426126640045636, 0.013976041072447234, 0.01426126640045636, 0.013690815744438107, 0.9429549343981746, 0.013976041072447234, 0.7949229891614376, 0.9361095265259555, 0.7866514546491729, 0.02766685681688534, 0.013405590416428978, 0.013405590416428978, 0.013405590416428978, 0.012549914432401598, 0.01226468910439247, 0.01226468910439247, 0.011123787792355962, 0.011123787792355962, 0.015116942384483743, 0.01825442099258414, 0.010838562464346835, 0.9067313177410155, 0.9178551055333714, 0.7441528807758129, 0.009412435824301199, 0.00912721049629207, 0.008556759840273816, 0.007701083856246435, 0.007415858528237307, 0.007415858528237307, 0.007415858528237307, 0.00713063320022818, 0.00713063320022818, 0.00713063320022818, 0.00713063320022818, 0.007986309184255563, 0.009982886480319452, 0.00713063320022818, 0.007415858528237307, 0.01226468910439247, 0.011694238448374215, 0.013120365088419851, 0.9064460924130062, 0.9218482601254991, 0.8904734740444952, 0.3103251568739304, 0.28465487735310896, 0.195094124358243, 0.8730747290359384, 0.011694238448374215, 0.01026811180832858, 0.009412435824301199, 0.009412435824301199, 0.008556759840273816, 0.008841985168282943, 0.008841985168282943, 0.00912721049629207, 0.008841985168282943, 0.009697661152310326, 0.010553337136337706, 0.01026811180832858, 0.01026811180832858, 0.010838562464346835, 0.011409013120365089, 0.01226468910439247, 0.10924130062749572, 0.37763833428408444, 0.9021677124928693, 0.4412435824301198, 0.030233884768967486, 0.025955504848830576, 0.01654306902452938, 0.9463776383342841, 0.014831717056474614, 0.01426126640045636, 0.014546491728465488, 0.015116942384483743, 0.015116942384483743, 0.01540216771249287, 0.015687393040501995, 0.015972618368511125, 0.018824871648602397, 0.023958927552766685, 0.02167712492869367, 0.02167712492869367, 0.02338847689674843, 0.023958927552766685, 0.026811180832857957, 0.02567027952082145, 0.026240730176839703, 0.027096406160867084, 0.027381631488876214, 0.06274957216200798, 0.037079292641186534, 0.03964632059326868, 0.0450656018254421, 0.04791785510553337, 0.0513405590416429, 0.05561893896177981, 0.05904164289788933, 0.06531660011409013, 0.07843696520250998, 0.10154021677124929, 0.12949229891614375, 0.33171705647461497, 0.6297775242441529], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTS_EIIC.gap.json b/pfam_gap_rates/PTS_EIIC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64d584a2efaa631b78f7626172ce4d5ce46d817a
--- /dev/null
+++ b/pfam_gap_rates/PTS_EIIC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PTS_IIB.gap.json b/pfam_gap_rates/PTS_IIB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3285a83576b0a0c027c7477c96004ae651abef7
--- /dev/null
+++ b/pfam_gap_rates/PTS_IIB.gap.json
@@ -0,0 +1 @@
+{"family": "PTS_IIB", "n_seqs": 2759, "length": 101, "gap_rates": [0.5081551286698079, 0.08807538963392533, 0.03624501631025734, 0.022834360275462123, 0.022109459949256977, 0.022109459949256977, 0.026458861906487857, 0.020659659296846683, 0.019572308807538963, 0.023196810438564697, 0.015585357013410656, 0.015585357013410656, 0.015585357013410656, 0.013773106197897789, 0.005799202609641174, 0.0061616527727437476, 0.24139180862631388, 0.005436752446538601, 0.005436752446538601, 0.0025371511417180137, 0.0025371511417180137, 0.0021747009786154403, 0.0021747009786154403, 0.002899601304820587, 0.002899601304820587, 0.0032620514679231605, 0.008698803914461761, 0.017760057992026096, 0.599855019934759, 0.6389996375498369, 0.6284885828198623, 0.540413193185937, 0.007249003262051468, 0.013048205871692642, 0.011598405219282348, 0.004711852120333454, 0.003986951794128307, 0.004349401957230881, 0.005074302283436027, 0.011960855382384922, 0.013048205871692642, 0.6357375860819138, 0.5360637912287061, 0.26603841971728887, 0.23196810438564697, 0.11525915186661834, 0.023921710764769843, 0.011235955056179775, 0.009061254077564335, 0.021022109459949256, 0.012323305545487495, 0.012323305545487495, 0.39434577745559984, 0.007611453425154041, 0.006524102935846321, 0.0061616527727437476, 0.006886553098948894, 0.006886553098948894, 0.008336353751359188, 0.009061254077564335, 0.010148604566872055, 0.017760057992026096, 0.01920985864443639, 0.02138455962305183, 0.286335628851033, 0.7549836897426604, 0.7368611815875317, 0.5295396882928597, 0.1674519753533889, 0.15694092062341428, 0.12830735773831098, 0.11127220007249003, 0.10801014860456687, 0.1022109459949257, 0.1130844508880029, 0.8234867705690467, 0.8579195360637912, 0.7905038057267125, 0.30772018847408483, 0.28162377673069955, 0.18013773106197897, 0.14389271475172163, 0.1185212033345415, 0.12069590431315694, 0.12359550561797752, 0.13156940920623414, 0.13700616165277274, 0.14461761507792678, 0.39289597680318955, 0.20079739035882566, 0.4588619064878579, 0.4621239579557811, 0.19681043856469735, 0.20804639362087712, 0.21891989851395433, 0.23088075389633925, 0.2529902138455962, 0.2852482783617253, 0.3349039507067778, 0.4603117071402682, 0.8075389633925335], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PWWP.gap.json b/pfam_gap_rates/PWWP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff7271e48d761cb64f517ac91d4e25a809860539
--- /dev/null
+++ b/pfam_gap_rates/PWWP.gap.json
@@ -0,0 +1 @@
+{"family": "PWWP", "n_seqs": 1548, "length": 130, "gap_rates": [0.5975452196382429, 0.29780361757105944, 0.11692506459948321, 0.0562015503875969, 0.037467700258397935, 0.02454780361757106, 0.020671834625323, 0.020025839793281652, 0.01744186046511628, 0.016795865633074936, 0.014857881136950904, 0.015503875968992248, 0.008397932816537468, 0.009689922480620155, 0.015503875968992248, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.006459948320413436, 0.004521963824289405, 0.005813953488372093, 0.0071059431524547806, 0.0071059431524547806, 0.009689922480620155, 0.01808785529715762, 0.020025839793281652, 0.02260981912144703, 0.01937984496124031, 0.05813953488372093, 0.05103359173126615, 0.06395348837209303, 0.07751937984496124, 0.10981912144702842, 0.15503875968992248, 0.15503875968992248, 0.2571059431524548, 0.313953488372093, 0.39276485788113696, 0.39018087855297157, 0.4877260981912145, 0.7719638242894057, 0.8268733850129198, 0.8449612403100775, 0.8559431524547804, 0.8624031007751938, 0.877906976744186, 0.8837209302325582, 0.9011627906976745, 0.9050387596899225, 0.937984496124031, 0.9050387596899225, 0.9037467700258398, 0.8914728682170543, 0.8804909560723514, 0.8669250645994832, 0.8598191214470284, 0.8507751937984496, 0.8359173126614987, 0.812015503875969, 0.7332041343669251, 0.5051679586563308, 0.03617571059431524, 0.03229974160206718, 0.027131782945736434, 0.015503875968992248, 0.01614987080103359, 0.01614987080103359, 0.01614987080103359, 0.0665374677002584, 0.02648578811369509, 0.02648578811369509, 0.02131782945736434, 0.9257105943152455, 0.9483204134366925, 0.6937984496124031, 0.023255813953488372, 0.02454780361757106, 0.023255813953488372, 0.9392764857881137, 0.9463824289405685, 0.9250645994832042, 0.037467700258397935, 0.03617571059431524, 0.03488372093023256, 0.03940568475452196, 0.03811369509043928, 0.03165374677002584, 0.03165374677002584, 0.03294573643410853, 0.04198966408268734, 0.043281653746770024, 0.0562015503875969, 0.0665374677002584, 0.17571059431524547, 0.11757105943152454, 0.12144702842377261, 0.12080103359173126, 0.08591731266149871, 0.07816537467700259, 0.07299741602067183, 0.07945736434108527, 0.09043927648578812, 0.11046511627906977, 0.2648578811369509, 0.39276485788113696, 0.46770025839793283, 0.5258397932816538, 0.5187338501291989, 0.8462532299741602, 0.9095607235142119, 0.9366925064599483, 0.9437984496124031, 0.9489664082687338, 0.9418604651162791, 0.9231266149870802, 0.8824289405684754, 0.83656330749354, 0.187984496124031, 0.15633074935400518, 0.15374677002583978, 0.15180878552971577, 0.1582687338501292, 0.16214470284237725, 0.17118863049095606, 0.18152454780361757, 0.19832041343669252, 0.2797157622739018, 0.3772609819121447, 0.5775193798449613, 0.8145994832041343], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pacifastin_I.gap.json b/pfam_gap_rates/Pacifastin_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b068056d230a2306733577f160a60da17e41e840
--- /dev/null
+++ b/pfam_gap_rates/Pacifastin_I.gap.json
@@ -0,0 +1 @@
+{"family": "Pacifastin_I", "n_seqs": 224, "length": 44, "gap_rates": [0.65625, 0.49107142857142855, 0.44642857142857145, 0.21875, 0.09821428571428571, 0.08482142857142858, 0.06696428571428571, 0.05803571428571429, 0.03125, 0.9375, 0.8660714285714286, 0.0, 0.0, 0.9419642857142857, 0.9107142857142857, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3392857142857143, 0.008928571428571428, 0.0, 0.004464285714285714, 0.6116071428571429, 0.008928571428571428, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.022321428571428572, 0.10714285714285714, 0.29017857142857145, 0.38839285714285715, 0.5848214285714286, 0.6964285714285714, 0.7678571428571429, 0.8616071428571429, 0.8928571428571429], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PapC_C.gap.json b/pfam_gap_rates/PapC_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b817be5cc8ef46d67c85ffac482a9b2eba87eff4
--- /dev/null
+++ b/pfam_gap_rates/PapC_C.gap.json
@@ -0,0 +1 @@
+{"family": "PapC_C", "n_seqs": 204, "length": 71, "gap_rates": [0.5588235294117647, 0.29901960784313725, 0.20098039215686275, 0.09313725490196079, 0.06862745098039216, 0.06372549019607843, 0.2107843137254902, 0.04411764705882353, 0.0392156862745098, 0.04411764705882353, 0.029411764705882353, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.004901960784313725, 0.004901960784313725, 0.07352941176470588, 0.024509803921568627, 0.0, 0.0, 0.9019607843137255, 0.9362745098039216, 0.9264705882352942, 0.8088235294117647, 0.024509803921568627, 0.014705882352941176, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004901960784313725, 0.0, 0.0, 0.946078431372549, 0.004901960784313725, 0.004901960784313725, 0.014705882352941176, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.00980392156862745, 0.23039215686274508, 0.5294117647058824, 0.4950980392156863, 0.00980392156862745, 0.024509803921568627, 0.029411764705882353, 0.0784313725490196, 0.11764705882352941, 0.24509803921568626, 0.3137254901960784, 0.47058823529411764, 0.7696078431372549], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PapD-like.gap.json b/pfam_gap_rates/PapD-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b657bd4ff2b5fd1c60ddb9ed4c8d61c33d94a0b0
--- /dev/null
+++ b/pfam_gap_rates/PapD-like.gap.json
@@ -0,0 +1 @@
+{"family": "PapD-like", "n_seqs": 154, "length": 105, "gap_rates": [0.8441558441558441, 0.5974025974025974, 0.5194805194805194, 0.2077922077922078, 0.14285714285714285, 0.07142857142857142, 0.03896103896103896, 0.032467532467532464, 0.032467532467532464, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006493506493506494, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006493506493506494, 0.012987012987012988, 0.0, 0.0, 0.01948051948051948, 0.025974025974025976, 0.03896103896103896, 0.487012987012987, 0.948051948051948, 0.18831168831168832, 0.12987012987012986, 0.9285714285714286, 0.07792207792207792, 0.09740259740259741, 0.1038961038961039, 0.1038961038961039, 0.11038961038961038, 0.12337662337662338, 0.12337662337662338, 0.948051948051948, 0.12987012987012986, 0.9155844155844156, 0.12337662337662338, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.14285714285714285, 0.14935064935064934, 0.14935064935064934, 0.15584415584415584, 0.16233766233766234, 0.16233766233766234, 0.16233766233766234, 0.16233766233766234, 0.16233766233766234, 0.16233766233766234, 0.16233766233766234, 0.17532467532467533, 0.21428571428571427, 0.7077922077922078, 0.3051948051948052, 0.3181818181818182, 0.3246753246753247, 0.37662337662337664, 0.37662337662337664, 0.4025974025974026, 0.4090909090909091, 0.4155844155844156, 0.42207792207792205, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.43506493506493504, 0.44805194805194803, 0.4935064935064935, 0.5064935064935064, 0.525974025974026, 0.5324675324675324, 0.538961038961039, 0.5454545454545454, 0.564935064935065, 0.564935064935065, 0.5909090909090909, 0.6038961038961039, 0.6623376623376623, 0.7337662337662337, 0.7922077922077922, 0.8766233766233766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ParD_like.gap.json b/pfam_gap_rates/ParD_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e12792283d8398b21d2552cf880e87d1eee2028f
--- /dev/null
+++ b/pfam_gap_rates/ParD_like.gap.json
@@ -0,0 +1 @@
+{"family": "ParD_like", "n_seqs": 202, "length": 90, "gap_rates": [0.5891089108910891, 0.2623762376237624, 0.10396039603960396, 0.0297029702970297, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.024752475247524754, 0.01485148514851485, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0049504950495049506, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.04455445544554455, 0.0594059405940594, 0.06930693069306931, 0.0891089108910891, 0.0891089108910891, 0.09405940594059406, 0.09405940594059406, 0.09900990099009901, 0.09900990099009901, 0.9306930693069307, 0.9306930693069307, 0.9306930693069307, 0.9306930693069307, 0.9405940594059405, 0.9405940594059405, 0.9455445544554455, 0.9455445544554455, 0.9455445544554455, 0.9455445544554455, 0.9455445544554455, 0.9455445544554455, 0.9405940594059405, 0.9405940594059405, 0.9405940594059405, 0.9306930693069307, 0.9306930693069307, 0.9306930693069307, 0.9306930693069307, 0.10891089108910891, 0.1188118811881188, 0.12376237623762376, 0.12871287128712872, 0.12871287128712872, 0.13861386138613863, 0.13861386138613863, 0.1485148514851485, 0.15841584158415842, 0.19801980198019803, 0.297029702970297, 0.38613861386138615, 0.4207920792079208, 0.504950495049505, 0.6336633663366337, 0.7029702970297029, 0.7623762376237624, 0.801980198019802, 0.8316831683168316, 0.8564356435643564, 0.8712871287128713, 0.8861386138613861, 0.9306930693069307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Penicillinase_R.gap.json b/pfam_gap_rates/Penicillinase_R.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb7b0e34db67f72a2fee90b2a1e35572fd9daaa5
--- /dev/null
+++ b/pfam_gap_rates/Penicillinase_R.gap.json
@@ -0,0 +1 @@
+{"family": "Penicillinase_R", "n_seqs": 1664, "length": 119, "gap_rates": [0.37740384615384615, 0.18990384615384615, 0.0889423076923077, 0.0655048076923077, 0.061899038461538464, 0.059495192307692304, 0.0546875, 0.05348557692307692, 0.0234375, 0.0234375, 0.0234375, 0.022235576923076924, 0.021634615384615384, 0.021033653846153848, 0.021033653846153848, 0.019831730769230768, 0.019831730769230768, 0.6995192307692307, 0.018629807692307692, 0.017427884615384616, 0.017427884615384616, 0.015625, 0.015625, 0.01622596153846154, 0.017427884615384616, 0.018028846153846152, 0.014423076923076924, 0.018028846153846152, 0.015024038461538462, 0.01622596153846154, 0.019831730769230768, 0.8804086538461539, 0.30528846153846156, 0.12439903846153846, 0.0234375, 0.019230769230769232, 0.01141826923076923, 0.010817307692307692, 0.010817307692307692, 0.010817307692307692, 0.010216346153846154, 0.010216346153846154, 0.009615384615384616, 0.0078125, 0.008413461538461538, 0.0078125, 0.0078125, 0.008413461538461538, 0.008413461538461538, 0.008413461538461538, 0.008413461538461538, 0.008413461538461538, 0.008413461538461538, 0.008413461538461538, 0.008413461538461538, 0.010817307692307692, 0.013221153846153846, 0.10096153846153846, 0.9459134615384616, 0.09194711538461539, 0.060697115384615384, 0.06430288461538461, 0.025240384615384616, 0.03665865384615385, 0.028245192307692308, 0.018028846153846152, 0.015024038461538462, 0.01201923076923077, 0.015024038461538462, 0.013822115384615384, 0.013221153846153846, 0.013221153846153846, 0.013822115384615384, 0.015024038461538462, 0.014423076923076924, 0.01622596153846154, 0.016826923076923076, 0.017427884615384616, 0.020432692307692308, 0.021033653846153848, 0.022235576923076924, 0.021634615384615384, 0.022235576923076924, 0.022235576923076924, 0.027043269230769232, 0.028245192307692308, 0.028846153846153848, 0.1346153846153846, 0.13701923076923078, 0.03365384615384615, 0.03125, 0.028245192307692308, 0.027644230769230768, 0.028245192307692308, 0.028846153846153848, 0.03064903846153846, 0.03365384615384615, 0.03365384615384615, 0.03545673076923077, 0.03545673076923077, 0.03665865384615385, 0.2169471153846154, 0.9110576923076923, 0.18870192307692307, 0.04447115384615385, 0.045072115384615384, 0.045072115384615384, 0.04567307692307692, 0.04567307692307692, 0.046274038461538464, 0.048677884615384616, 0.05108173076923077, 0.051682692307692304, 0.05348557692307692, 0.05889423076923077, 0.06790865384615384, 0.09134615384615384, 0.18389423076923078, 0.8185096153846154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pentaxin.gap.json b/pfam_gap_rates/Pentaxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7d6713c19c331747ae96b3c188e09d911f55727
--- /dev/null
+++ b/pfam_gap_rates/Pentaxin.gap.json
@@ -0,0 +1 @@
+{"family": "Pentaxin", "n_seqs": 461, "length": 213, "gap_rates": [0.8590021691973969, 0.7462039045553145, 0.6702819956616052, 0.559652928416486, 0.4750542299349241, 0.47071583514099785, 0.455531453362256, 0.45336225596529284, 0.4837310195227766, 0.44685466377440347, 0.3752711496746204, 0.3557483731019523, 0.34490238611713664, 0.34273318872017355, 0.3232104121475054, 0.3123644251626898, 0.3123644251626898, 0.3123644251626898, 0.3080260303687636, 0.2993492407809111, 0.279826464208243, 0.25379609544468545, 0.2386117136659436, 0.7114967462039046, 0.227765726681128, 0.227765726681128, 0.22342733188720174, 0.22125813449023862, 0.21908893709327548, 0.21908893709327548, 0.22125813449023862, 0.22125813449023862, 0.21691973969631237, 0.21691973969631237, 0.21691973969631237, 0.21691973969631237, 0.21475054229934923, 0.8329718004338394, 0.21258134490238612, 0.19956616052060738, 0.8676789587852495, 0.6724511930585684, 0.19956616052060738, 0.2039045553145336, 0.18872017353579176, 0.175704989154013, 0.1735357917570499, 0.175704989154013, 0.1735357917570499, 0.1735357917570499, 0.175704989154013, 0.1843817787418655, 0.18004338394793926, 0.20824295010845986, 0.9414316702819957, 0.8980477223427332, 0.1822125813449024, 0.19088937093275488, 0.17787418655097614, 0.17787418655097614, 0.175704989154013, 0.17787418655097614, 0.1822125813449024, 0.23427331887201736, 0.2472885032537961, 0.2017353579175705, 0.22559652928416485, 0.21475054229934923, 0.19522776572668113, 0.1843817787418655, 0.1822125813449024, 0.17787418655097614, 0.17787418655097614, 0.17136659436008678, 0.16702819956616052, 0.16268980477223427, 0.1648590021691974, 0.17136659436008678, 0.17136659436008678, 0.1735357917570499, 0.17136659436008678, 0.175704989154013, 0.1735357917570499, 0.175704989154013, 0.17787418655097614, 0.16919739696312364, 0.17136659436008678, 0.1648590021691974, 0.15184381778741865, 0.8199566160520607, 0.9436008676789588, 0.8980477223427332, 0.6616052060737527, 0.07809110629067245, 0.06290672451193059, 0.049891540130151846, 0.049891540130151846, 0.049891540130151846, 0.052060737527114966, 0.052060737527114966, 0.052060737527114966, 0.05422993492407809, 0.05639913232104121, 0.06073752711496746, 0.06724511930585683, 0.05856832971800434, 0.05422993492407809, 0.05639913232104121, 0.05856832971800434, 0.05856832971800434, 0.05639913232104121, 0.0650759219088937, 0.0650759219088937, 0.06290672451193059, 0.06073752711496746, 0.09978308026030369, 0.08676789587852494, 0.08676789587852494, 0.0911062906724512, 0.9370932754880694, 0.08676789587852494, 0.7396963123644251, 0.07592190889370933, 0.06941431670281996, 0.9479392624728851, 0.07158351409978309, 0.9457700650759219, 0.0737527114967462, 0.0737527114967462, 0.07158351409978309, 0.0737527114967462, 0.07592190889370933, 0.07158351409978309, 0.07592190889370933, 0.07809110629067245, 0.0737527114967462, 0.0737527114967462, 0.06941431670281996, 0.9436008676789588, 0.0737527114967462, 0.0737527114967462, 0.0650759219088937, 0.0650759219088937, 0.0650759219088937, 0.0650759219088937, 0.0650759219088937, 0.07158351409978309, 0.0737527114967462, 0.0824295010845987, 0.07809110629067245, 0.0824295010845987, 0.08026030368763558, 0.07592190889370933, 0.06941431670281996, 0.08676789587852494, 0.11713665943600868, 0.09327548806941431, 0.07592190889370933, 0.06724511930585683, 0.06724511930585683, 0.06724511930585683, 0.07158351409978309, 0.07158351409978309, 0.07592190889370933, 0.07592190889370933, 0.07592190889370933, 0.07592190889370933, 0.07592190889370933, 0.08026030368763558, 0.08026030368763558, 0.0824295010845987, 0.0824295010845987, 0.0824295010845987, 0.08459869848156182, 0.09761388286334056, 0.09544468546637744, 0.10629067245119306, 0.11062906724511931, 0.11713665943600868, 0.1279826464208243, 0.13882863340563992, 0.1475054229934924, 0.1475054229934924, 0.9457700650759219, 0.1648590021691974, 0.18655097613882862, 0.2039045553145336, 0.8112798264642083, 0.9349240780911063, 0.5835140997830802, 0.22125813449023862, 0.2017353579175705, 0.2017353579175705, 0.2039045553145336, 0.20607375271149675, 0.2017353579175705, 0.20824295010845986, 0.21258134490238612, 0.2386117136659436, 0.2754880694143167, 0.30585683297180044, 0.3579175704989154, 0.37093275488069416, 0.3839479392624729, 0.39045553145336226, 0.41431670281995664, 0.4403470715835141, 0.5010845986984815, 0.5336225596529284, 0.6507592190889371, 0.7223427331887202, 0.806941431670282, 0.8308026030368764], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PepSY_TM.gap.json b/pfam_gap_rates/PepSY_TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48a2db259fc218e482f790869724a777245a7574
--- /dev/null
+++ b/pfam_gap_rates/PepSY_TM.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Pept_tRNA_hydro.gap.json b/pfam_gap_rates/Pept_tRNA_hydro.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a609d2e659440f6d12da61b21b118dcc27c19ac
--- /dev/null
+++ b/pfam_gap_rates/Pept_tRNA_hydro.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C10.gap.json b/pfam_gap_rates/Peptidase_C10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..708ec92d8d223244a83da1d97127cbdca941f4c9
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C11.gap.json b/pfam_gap_rates/Peptidase_C11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..451be07c9a3c8f1ffbdb018f14453f6fe23a9c58
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C11.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C12.gap.json b/pfam_gap_rates/Peptidase_C12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27890b4b46d39a38762fde72ad0dafca2c095527
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C12.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C39_2.gap.json b/pfam_gap_rates/Peptidase_C39_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1383603154309a8b79ff43c90f391dd448bef50
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C39_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C48.gap.json b/pfam_gap_rates/Peptidase_C48.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7316f40886d74f76144437384d5843b3ca90b2c5
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C48.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C54.gap.json b/pfam_gap_rates/Peptidase_C54.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e3493ee3821564f16afe0a473328becb6c33489
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C54.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M16.gap.json b/pfam_gap_rates/Peptidase_M16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..098b4aed41796bc83b48fc6d944e073e8c8e2b15
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M16.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M16", "n_seqs": 5000, "length": 154, "gap_rates": [0.8338, 0.598, 0.5256, 0.4868, 0.4462, 0.412, 0.3828, 0.465, 0.312, 0.294, 0.2754, 0.2628, 0.2534, 0.2384, 0.2312, 0.2262, 0.222, 0.2166, 0.2104, 0.2014, 0.1924, 0.1846, 0.1828, 0.1786, 0.1756, 0.1584, 0.1258, 0.1188, 0.1114, 0.1338, 0.066, 0.041, 0.039, 0.0368, 0.0366, 0.0352, 0.0342, 0.034, 0.0328, 0.0262, 0.0252, 0.0246, 0.0244, 0.0244, 0.081, 0.076, 0.0722, 0.0632, 0.0316, 0.0346, 0.7302, 0.086, 0.0712, 0.051, 0.0458, 0.0452, 0.0452, 0.0374, 0.037, 0.037, 0.0374, 0.0374, 0.0368, 0.0368, 0.0368, 0.931, 0.8644, 0.0374, 0.0378, 0.0376, 0.0384, 0.0388, 0.0394, 0.04, 0.0398, 0.0402, 0.0404, 0.0396, 0.0382, 0.037, 0.0378, 0.0402, 0.0522, 0.0614, 0.046, 0.0408, 0.9132, 0.9374, 0.8286, 0.042, 0.042, 0.0416, 0.0414, 0.0406, 0.0416, 0.0428, 0.0434, 0.0436, 0.0442, 0.046, 0.046, 0.0466, 0.0474, 0.0464, 0.0484, 0.0516, 0.053, 0.0572, 0.0604, 0.0664, 0.071, 0.078, 0.0808, 0.2496, 0.2518, 0.2382, 0.2408, 0.2422, 0.2452, 0.2486, 0.1442, 0.1566, 0.1742, 0.1978, 0.2178, 0.2288, 0.2394, 0.2498, 0.2656, 0.4134, 0.4118, 0.4102, 0.4148, 0.3404, 0.3434, 0.3506, 0.3554, 0.3596, 0.3662, 0.3752, 0.3836, 0.3922, 0.4074, 0.4542, 0.4256, 0.4318, 0.4402, 0.4492, 0.469, 0.4872, 0.5082, 0.5478, 0.6288, 0.7192], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M18.gap.json b/pfam_gap_rates/Peptidase_M18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3db9f802c7cb28d90b6cdf11459f51fa92c2e43c
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M18.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M23.gap.json b/pfam_gap_rates/Peptidase_M23.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aaca07c714f8a5599686c80b8fa422ca5f2ff654
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M23.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M23", "n_seqs": 5000, "length": 120, "gap_rates": [0.3306, 0.1552, 0.1098, 0.0966, 0.0884, 0.085, 0.0798, 0.0774, 0.0714, 0.0658, 0.0678, 0.0452, 0.0386, 0.0354, 0.0322, 0.0314, 0.0312, 0.031, 0.0306, 0.0296, 0.0292, 0.0292, 0.029, 0.0284, 0.0302, 0.03, 0.0306, 0.0304, 0.9404, 0.8048, 0.0398, 0.103, 0.89, 0.902, 0.9144, 0.9348, 0.9458, 0.9398, 0.9284, 0.9076, 0.8944, 0.8774, 0.0404, 0.0358, 0.9072, 0.0308, 0.03, 0.0272, 0.026, 0.0256, 0.0258, 0.0258, 0.028, 0.9116, 0.9192, 0.896, 0.0264, 0.0288, 0.0676, 0.0314, 0.0242, 0.0236, 0.0238, 0.0234, 0.0226, 0.0226, 0.0226, 0.0242, 0.0246, 0.0488, 0.0292, 0.8398, 0.8064, 0.0288, 0.0276, 0.027, 0.0254, 0.0262, 0.0234, 0.0124, 0.0128, 0.0132, 0.0152, 0.0166, 0.0178, 0.018, 0.0184, 0.0184, 0.0188, 0.0192, 0.0326, 0.0346, 0.0398, 0.1128, 0.9056, 0.9308, 0.8842, 0.065, 0.057, 0.8988, 0.936, 0.8842, 0.0502, 0.0454, 0.037, 0.0354, 0.035, 0.0358, 0.0374, 0.0406, 0.0552, 0.0846, 0.937, 0.1448, 0.196, 0.2386, 0.2616, 0.2742, 0.2862, 0.3228], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M48_N.gap.json b/pfam_gap_rates/Peptidase_M48_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34ecb2508fc5b7d852567690593b7c9f2f82497a
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M48_N.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M48_N", "n_seqs": 791, "length": 189, "gap_rates": [0.5979772439949431, 0.5549936788874842, 0.4968394437420986, 0.46017699115044247, 0.42983565107458915, 0.40960809102402024, 0.3893805309734513, 0.3843236409608091, 0.3691529709228824, 0.549936788874842, 0.7560050568900126, 0.29077117572692796, 0.2895069532237674, 0.2806573957016435, 0.27560050568900124, 0.27054361567635904, 0.26548672566371684, 0.24525916561314792, 0.213653603034134, 0.18584070796460178, 0.1731984829329962, 0.16687737041719342, 0.16308470290771176, 0.1529709228824273, 0.14917825537294563, 0.14285714285714285, 0.13400758533501897, 0.12389380530973451, 0.12262958280657396, 0.11630847029077118, 0.11378002528445007, 0.11378002528445007, 0.1125158027812895, 0.11125158027812895, 0.1125158027812895, 0.11504424778761062, 0.10240202275600506, 0.10240202275600506, 0.0986093552465234, 0.09481668773704172, 0.0922882427307206, 0.0922882427307206, 0.09355246523388117, 0.0922882427307206, 0.09102402022756005, 0.08723135271807839, 0.08723135271807839, 0.08217446270543616, 0.08091024020227561, 0.08723135271807839, 0.07964601769911504, 0.07458912768647281, 0.07458912768647281, 0.08343868520859671, 0.07964601769911504, 0.08470290771175727, 0.08091024020227561, 0.0897597977243995, 0.07838179519595449, 0.08091024020227561, 0.07458912768647281, 0.07711757269279393, 0.07332490518331226, 0.07332490518331226, 0.07332490518331226, 0.07332490518331226, 0.07711757269279393, 0.07838179519595449, 0.6131479140328698, 0.7130214917825537, 0.8824273072060683, 0.9481668773704172, 0.718078381795196, 0.6586599241466498, 0.5865992414664981, 0.6270543615676359, 0.5335018963337548, 0.8824273072060683, 0.16434892541087232, 0.13527180783817952, 0.09355246523388117, 0.07711757269279393, 0.0606826801517067, 0.0493046776232617, 0.04424778761061947, 0.040455120101137804, 0.040455120101137804, 0.040455120101137804, 0.040455120101137804, 0.039190897597977246, 0.03792667509481669, 0.03666245259165613, 0.03666245259165613, 0.03666245259165613, 0.03792667509481669, 0.03792667509481669, 0.03666245259165613, 0.03792667509481669, 0.035398230088495575, 0.03286978508217446, 0.03286978508217446, 0.03286978508217446, 0.03286978508217446, 0.03286978508217446, 0.03286978508217446, 0.03413400758533502, 0.04804045512010114, 0.0493046776232617, 0.045512010113780026, 0.05562579013906448, 0.04804045512010114, 0.041719342604298354, 0.045512010113780026, 0.03792667509481669, 0.05436156763590392, 0.045512010113780026, 0.039190897597977246, 0.03666245259165613, 0.03666245259165613, 0.03413400758533502, 0.03413400758533502, 0.029077117572692796, 0.0316055625790139, 0.03286978508217446, 0.03034134007585335, 0.03034134007585335, 0.03034134007585335, 0.03034134007585335, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.029077117572692796, 0.029077117572692796, 0.02781289506953224, 0.02781289506953224, 0.02781289506953224, 0.029077117572692796, 0.03034134007585335, 0.03034134007585335, 0.03034134007585335, 0.03034134007585335, 0.03034134007585335, 0.03034134007585335, 0.03034134007585335, 0.03034134007585335, 0.0316055625790139, 0.0316055625790139, 0.0316055625790139, 0.03413400758533502, 0.03413400758533502, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.04298356510745891, 0.041719342604298354, 0.0922882427307206, 0.04424778761061947, 0.040455120101137804, 0.040455120101137804, 0.040455120101137804, 0.039190897597977246, 0.039190897597977246, 0.03666245259165613, 0.03666245259165613, 0.03792667509481669, 0.039190897597977246, 0.03792667509481669, 0.039190897597977246, 0.040455120101137804, 0.04298356510745891, 0.045512010113780026, 0.04804045512010114, 0.04804045512010114, 0.04804045512010114, 0.04804045512010114, 0.04804045512010114, 0.05056890012642225, 0.05056890012642225, 0.05056890012642225, 0.05309734513274336, 0.05562579013906448, 0.05815423514538559, 0.0606826801517067, 0.0632111251580278, 0.0632111251580278, 0.06700379266750948, 0.07711757269279393, 0.25916561314791403], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M49.gap.json b/pfam_gap_rates/Peptidase_M49.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5c1dbf707d5fcfd840332747dec9f803fb6ee74f
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M49.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M64.gap.json b/pfam_gap_rates/Peptidase_M64.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..672f883c020980928c78a5e4ac7655a2468ffd52
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M64.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S41_N.gap.json b/pfam_gap_rates/Peptidase_S41_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72ef96b534f91cebb1ebc826d6457fb19c346200
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S41_N.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_S41_N", "n_seqs": 123, "length": 131, "gap_rates": [0.6585365853658537, 0.6097560975609756, 0.5934959349593496, 0.5853658536585366, 0.5853658536585366, 0.5853658536585366, 0.5853658536585366, 0.5772357723577236, 0.5772357723577236, 0.5772357723577236, 0.5609756097560976, 0.5609756097560976, 0.5609756097560976, 0.5609756097560976, 0.5447154471544715, 0.5365853658536586, 0.5121951219512195, 0.4634146341463415, 0.25203252032520324, 0.11382113821138211, 0.056910569105691054, 0.04065040650406504, 0.032520325203252036, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.04065040650406504, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.016260162601626018, 0.016260162601626018, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.22764227642276422, 0.22764227642276422, 0.14634146341463414, 0.14634146341463414, 0.0, 0.0, 0.0, 0.016260162601626018, 0.04878048780487805, 0.024390243902439025, 0.0, 0.024390243902439025, 0.024390243902439025, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.06504065040650407, 0.06504065040650407, 0.2845528455284553, 0.2926829268292683, 0.34146341463414637, 0.34146341463414637, 0.34146341463414637, 0.34146341463414637, 0.8536585365853658, 0.44715447154471544, 0.5284552845528455, 0.34146341463414637, 0.5447154471544715, 0.5447154471544715, 0.6016260162601627, 0.7804878048780488, 0.6341463414634146, 0.6097560975609756, 0.6178861788617886, 0.6178861788617886, 0.6504065040650406, 0.6097560975609756, 0.5365853658536586, 0.5040650406504065, 0.5203252032520326, 0.5121951219512195, 0.5121951219512195, 0.4959349593495935, 0.4959349593495935, 0.5040650406504065, 0.5121951219512195, 0.5121951219512195, 0.5121951219512195, 0.5284552845528455, 0.5284552845528455, 0.5365853658536586, 0.5365853658536586, 0.5365853658536586, 0.5284552845528455, 0.5284552845528455, 0.5284552845528455, 0.5284552845528455, 0.5365853658536586, 0.5447154471544715, 0.5447154471544715, 0.5447154471544715, 0.6260162601626016], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S55.gap.json b/pfam_gap_rates/Peptidase_S55.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..edeec0c06232abf4fab43c3fae06d736a4672f92
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S55.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_S55", "n_seqs": 473, "length": 212, "gap_rates": [0.9154334038054969, 0.2748414376321353, 0.2156448202959831, 0.19873150105708245, 0.19873150105708245, 0.19873150105708245, 0.19661733615221988, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.1839323467230444, 0.18181818181818182, 0.17758985200845667, 0.17547568710359407, 0.17547568710359407, 0.17547568710359407, 0.17124735729386892, 0.17124735729386892, 0.16913319238900634, 0.16913319238900634, 0.16913319238900634, 0.16913319238900634, 0.16913319238900634, 0.35306553911205074, 0.18181818181818182, 0.16913319238900634, 0.16913319238900634, 0.16913319238900634, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.1649048625792812, 0.16701902748414377, 0.16913319238900634, 0.16913319238900634, 0.1839323467230444, 0.17758985200845667, 0.17124735729386892, 0.1733615221987315, 0.17124735729386892, 0.17124735729386892, 0.17124735729386892, 0.17124735729386892, 0.16913319238900634, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.1649048625792812, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.160676532769556, 0.160676532769556, 0.160676532769556, 0.16701902748414377, 0.16701902748414377, 0.16701902748414377, 0.16279069767441862, 0.16279069767441862, 0.8329809725158562, 0.4397463002114165, 0.23044397463002114, 0.15856236786469344, 0.15856236786469344, 0.15856236786469344, 0.15856236786469344, 0.15856236786469344, 0.15856236786469344, 0.15856236786469344, 0.15856236786469344, 0.15856236786469344, 0.15644820295983086, 0.15644820295983086, 0.15644820295983086, 0.15644820295983086, 0.15644820295983086, 0.15644820295983086, 0.15644820295983086, 0.15856236786469344, 0.16279069767441862, 0.1649048625792812, 0.18181818181818182, 0.2642706131078224, 0.45665961945031713, 0.9090909090909091, 0.35517970401691334, 0.2769556025369979, 0.1522198731501057, 0.1416490486257928, 0.13107822410147993, 0.12896405919661733, 0.1226215644820296, 0.10993657505285412, 0.10782241014799154, 0.10359408033826638, 0.10359408033826638, 0.08456659619450317, 0.06765327695560254, 0.05708245243128964, 0.048625792811839326, 0.046511627906976744, 0.04439746300211417, 0.042283298097251586, 0.035940803382663845, 0.03805496828752643, 0.042283298097251586, 0.042283298097251586, 0.02959830866807611, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.2029598308668076, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.021141649048625793, 0.023255813953488372, 0.02536997885835095, 0.02959830866807611, 0.03805496828752643, 0.0507399577167019, 0.23255813953488372, 0.11416490486257928, 0.03382663847780127, 0.03171247357293869, 0.021141649048625793, 0.016913319238900635, 0.016913319238900635, 0.016913319238900635, 0.016913319238900635, 0.023255813953488372, 0.023255813953488372, 0.019027484143763214, 0.02748414376321353, 0.023255813953488372, 0.02959830866807611, 0.035940803382663845, 0.02959830866807611, 0.02536997885835095, 0.03171247357293869, 0.03382663847780127, 0.021141649048625793, 0.016913319238900635, 0.016913319238900635, 0.019027484143763214, 0.021141649048625793, 0.014799154334038054, 0.016913319238900635, 0.016913319238900635, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.014799154334038054, 0.016913319238900635, 0.019027484143763214, 0.019027484143763214, 0.019027484143763214, 0.02536997885835095, 0.03805496828752643, 0.07610993657505286, 0.09936575052854123, 0.11627906976744186, 0.1226215644820296, 0.1226215644820296, 0.12684989429175475, 0.12684989429175475, 0.12684989429175475, 0.13107822410147993, 0.13107822410147993, 0.1331923890063425, 0.13530655391120508, 0.13742071881606766, 0.13742071881606766, 0.13953488372093023, 0.1416490486257928, 0.14376321353065538, 0.20507399577167018], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peripla_BP_3.gap.json b/pfam_gap_rates/Peripla_BP_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60b4af304382b800b0d7f249f23932421a81bd0b
--- /dev/null
+++ b/pfam_gap_rates/Peripla_BP_3.gap.json
@@ -0,0 +1 @@
+{"family": "Peripla_BP_3", "n_seqs": 5000, "length": 187, "gap_rates": [0.4874, 0.1624, 0.0946, 0.0692, 0.0584, 0.0508, 0.0476, 0.0448, 0.0422, 0.0398, 0.0384, 0.0366, 0.036, 0.0354, 0.0354, 0.0348, 0.9178, 0.9394, 0.9076, 0.8344, 0.7466, 0.1406, 0.0564, 0.0602, 0.0656, 0.0412, 0.0338, 0.0274, 0.0242, 0.0262, 0.0236, 0.0228, 0.0234, 0.0232, 0.0214, 0.021, 0.0206, 0.021, 0.0212, 0.021, 0.9346, 0.0204, 0.0208, 0.0252, 0.0228, 0.0216, 0.0204, 0.9186, 0.0256, 0.0244, 0.0234, 0.0216, 0.0334, 0.0262, 0.048, 0.0332, 0.036, 0.0576, 0.0272, 0.063, 0.0738, 0.0496, 0.032, 0.0244, 0.0232, 0.0188, 0.0214, 0.0458, 0.0538, 0.9212, 0.7828, 0.5132, 0.51, 0.893, 0.9446, 0.7816, 0.421, 0.2802, 0.2756, 0.9182, 0.5874, 0.3794, 0.901, 0.4968, 0.2804, 0.9086, 0.5236, 0.1986, 0.1752, 0.9252, 0.8942, 0.0106, 0.0094, 0.008, 0.0074, 0.0078, 0.0144, 0.0108, 0.0102, 0.009, 0.0066, 0.007, 0.0066, 0.0086, 0.0074, 0.0066, 0.004, 0.0036, 0.004, 0.0042, 0.0042, 0.007, 0.01, 0.0092, 0.0264, 0.0316, 0.027, 0.0154, 0.0094, 0.0062, 0.0044, 0.003, 0.0022, 0.0018, 0.0018, 0.0018, 0.0282, 0.0504, 0.02, 0.0154, 0.0246, 0.934, 0.0104, 0.007, 0.0048, 0.0088, 0.018, 0.0266, 0.0078, 0.0032, 0.0026, 0.0026, 0.0038, 0.004, 0.0036, 0.0038, 0.0038, 0.004, 0.0048, 0.0044, 0.0046, 0.0052, 0.0052, 0.006, 0.0066, 0.007, 0.0064, 0.008, 0.0186, 0.0244, 0.0444, 0.9114, 0.9434, 0.8722, 0.1654, 0.102, 0.0518, 0.0494, 0.0714, 0.0592, 0.0524, 0.0558, 0.0576, 0.0798, 0.1026, 0.7994, 0.1018, 0.0918, 0.0766, 0.0966, 0.0798, 0.0812, 0.0854, 0.0906, 0.0998, 0.1048, 0.2438], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peroxin-13_N.gap.json b/pfam_gap_rates/Peroxin-13_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95b255277704645a70497961e9ea9dea357baa31
--- /dev/null
+++ b/pfam_gap_rates/Peroxin-13_N.gap.json
@@ -0,0 +1 @@
+{"family": "Peroxin-13_N", "n_seqs": 224, "length": 154, "gap_rates": [0.7008928571428571, 0.21428571428571427, 0.1875, 0.16964285714285715, 0.13839285714285715, 0.05357142857142857, 0.05357142857142857, 0.049107142857142856, 0.04017857142857143, 0.04017857142857143, 0.04017857142857143, 0.03571428571428571, 0.026785714285714284, 0.026785714285714284, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.013392857142857142, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.017857142857142856, 0.017857142857142856, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.03125, 0.12053571428571429, 0.125, 0.14285714285714285, 0.05803571428571429, 0.05803571428571429, 0.0625, 0.0625, 0.12946428571428573, 0.8080357142857143, 0.9330357142857143, 0.9375, 0.9464285714285714, 0.9375, 0.9151785714285714, 0.47767857142857145, 0.36607142857142855, 0.16964285714285715, 0.11607142857142858, 0.08035714285714286, 0.05357142857142857, 0.049107142857142856, 0.049107142857142856, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.6339285714285714, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.049107142857142856, 0.05357142857142857, 0.05803571428571429, 0.0625, 0.20089285714285715, 0.2544642857142857, 0.3080357142857143, 0.38392857142857145, 0.8928571428571429, 0.9196428571428571, 0.8348214285714286, 0.5580357142857143, 0.6071428571428571, 0.4642857142857143, 0.33035714285714285, 0.24553571428571427, 0.17410714285714285, 0.13839285714285715, 0.12946428571428573, 0.12946428571428573, 0.07589285714285714, 0.8973214285714286, 0.9375, 0.8616071428571429, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.07142857142857142, 0.07589285714285714, 0.08035714285714286, 0.16964285714285715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pex16.gap.json b/pfam_gap_rates/Pex16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3c055ed5b2ae4c0045572549b1e20b66a2f9b19
--- /dev/null
+++ b/pfam_gap_rates/Pex16.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_Mu_Gam.gap.json b/pfam_gap_rates/Phage_Mu_Gam.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..329790911b73fd32bb9864ac9572392fbdf0ee45
--- /dev/null
+++ b/pfam_gap_rates/Phage_Mu_Gam.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_T4_gp19.gap.json b/pfam_gap_rates/Phage_T4_gp19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7c709fa5277e388c50546d1c21eb6e5027910ee
--- /dev/null
+++ b/pfam_gap_rates/Phage_T4_gp19.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_min_cap2.gap.json b/pfam_gap_rates/Phage_min_cap2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbc50e21e02eee02cfec38f195ee125ef32ce115
--- /dev/null
+++ b/pfam_gap_rates/Phage_min_cap2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_pRha.gap.json b/pfam_gap_rates/Phage_pRha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e478749ac59a57e9ce1151e264ff53d4c88799ce
--- /dev/null
+++ b/pfam_gap_rates/Phage_pRha.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_sheath_1.gap.json b/pfam_gap_rates/Phage_sheath_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cc066a42934586ff9e5e48b7440ec38f1af75fa
--- /dev/null
+++ b/pfam_gap_rates/Phage_sheath_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_tube.gap.json b/pfam_gap_rates/Phage_tube.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e433a85ac8c764a45cd79fb1d5df92095a2b1236
--- /dev/null
+++ b/pfam_gap_rates/Phage_tube.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pho88.gap.json b/pfam_gap_rates/Pho88.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6dfb91a6fa92c1b729300bc0f66f52b92e4dbdb
--- /dev/null
+++ b/pfam_gap_rates/Pho88.gap.json
@@ -0,0 +1 @@
+{"family": "Pho88", "n_seqs": 222, "length": 198, "gap_rates": [0.49099099099099097, 0.4189189189189189, 0.38738738738738737, 0.3333333333333333, 0.3153153153153153, 0.26126126126126126, 0.21171171171171171, 0.17567567567567569, 0.15765765765765766, 0.14864864864864866, 0.14414414414414414, 0.12612612612612611, 0.12162162162162163, 0.10810810810810811, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.09009009009009009, 0.09009009009009009, 0.08108108108108109, 0.07657657657657657, 0.06756756756756757, 0.08108108108108109, 0.07657657657657657, 0.07207207207207207, 0.06306306306306306, 0.06306306306306306, 0.05855855855855856, 0.04954954954954955, 0.04504504504504504, 0.04504504504504504, 0.04954954954954955, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04954954954954955, 0.04504504504504504, 0.04504504504504504, 0.04954954954954955, 0.04504504504504504, 0.04504504504504504, 0.06756756756756757, 0.05855855855855856, 0.07657657657657657, 0.06756756756756757, 0.07207207207207207, 0.06756756756756757, 0.07657657657657657, 0.07207207207207207, 0.9144144144144144, 0.9279279279279279, 0.9144144144144144, 0.18468468468468469, 0.1891891891891892, 0.16216216216216217, 0.14864864864864866, 0.8648648648648649, 0.7162162162162162, 0.09009009009009009, 0.09009009009009009, 0.05855855855855856, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.04054054054054054, 0.04054054054054054, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.036036036036036036, 0.04054054054054054, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04954954954954955, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.05405405405405406, 0.05405405405405406, 0.06756756756756757, 0.07657657657657657, 0.17567567567567569, 0.1891891891891892, 0.21621621621621623, 0.1891891891891892, 0.0990990990990991, 0.0990990990990991, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.2927927927927928, 0.14414414414414414, 0.11261261261261261, 0.11711711711711711, 0.12162162162162163, 0.9099099099099099, 0.8603603603603603, 0.13513513513513514, 0.9279279279279279, 0.14414414414414414, 0.18468468468468469, 0.13513513513513514, 0.40540540540540543, 0.7027027027027027, 0.8738738738738738, 0.9324324324324325, 0.9099099099099099, 0.8108108108108109, 0.5180180180180181, 0.26126126126126126, 0.13963963963963963, 0.20270270270270271, 0.20270270270270271, 0.1981981981981982, 0.20270270270270271, 0.19369369369369369, 0.21621621621621623, 0.22972972972972974, 0.26576576576576577, 0.28378378378378377, 0.2927927927927928, 0.3153153153153153, 0.31981981981981983, 0.34684684684684686, 0.36936936936936937, 0.40540540540540543, 0.527027027027027, 0.6171171171171171, 0.6801801801801802], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhoH.gap.json b/pfam_gap_rates/PhoH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b2110b67a07d5ecc705e9ebf72f7a4e189ab0d7
--- /dev/null
+++ b/pfam_gap_rates/PhoH.gap.json
@@ -0,0 +1 @@
+{"family": "PhoH", "n_seqs": 2587, "length": 222, "gap_rates": [0.135678391959799, 0.052183996907615, 0.04136064940085041, 0.038268264398917666, 0.03440278314650174, 0.031696946269810594, 0.030923850019327407, 0.030923850019327407, 0.029764205643602628, 0.028604561267877852, 0.027831465017394665, 0.027831465017394665, 0.027444916892153073, 0.02705836876691148, 0.025898724391186703, 0.02551217626594511, 0.7267104754541941, 0.7232315423270197, 0.02512562814070352, 0.026285272516428294, 0.02435253189022033, 0.023579435639737148, 0.023579435639737148, 0.023579435639737148, 0.023579435639737148, 0.023579435639737148, 0.023579435639737148, 0.023579435639737148, 0.02396598376497874, 0.02396598376497874, 0.02396598376497874, 0.02396598376497874, 0.02396598376497874, 0.02396598376497874, 0.02396598376497874, 0.023579435639737148, 0.02396598376497874, 0.023579435639737148, 0.02396598376497874, 0.02396598376497874, 0.023192887514495556, 0.02396598376497874, 0.02512562814070352, 0.03478933127174333, 0.04793196752995748, 0.039427908774642445, 0.030537301894085815, 0.7754155392346347, 0.028991109393119444, 0.02705836876691148, 0.028604561267877852, 0.02705836876691148, 0.026285272516428294, 0.026285272516428294, 0.026671820641669886, 0.026285272516428294, 0.025898724391186703, 0.026671820641669886, 0.027444916892153073, 0.028218013142636257, 0.028218013142636257, 0.028604561267877852, 0.030923850019327407, 0.87862388867414, 0.029764205643602628, 0.028604561267877852, 0.028604561267877852, 0.028218013142636257, 0.027831465017394665, 0.028604561267877852, 0.028218013142636257, 0.029377657518361036, 0.028991109393119444, 0.030923850019327407, 0.032856590645535366, 0.028991109393119444, 0.029377657518361036, 0.029377657518361036, 0.028991109393119444, 0.029377657518361036, 0.029377657518361036, 0.029377657518361036, 0.029377657518361036, 0.028604561267877852, 0.028604561267877852, 0.028604561267877852, 0.028218013142636257, 0.028218013142636257, 0.027831465017394665, 0.027831465017394665, 0.027831465017394665, 0.027831465017394665, 0.02705836876691148, 0.027444916892153073, 0.7877850792423656, 0.7935833011209895, 0.8268264398917665, 0.847313490529571, 0.9300347893312717, 0.9431774255894859, 0.8983378430614611, 0.8345574023965984, 0.7959025898724391, 0.7897178198685736, 0.7873985311171241, 0.026285272516428294, 0.02705836876691148, 0.026285272516428294, 0.025898724391186703, 0.026671820641669886, 0.026671820641669886, 0.026671820641669886, 0.027831465017394665, 0.028218013142636257, 0.08504058755315037, 0.032856590645535366, 0.029377657518361036, 0.027831465017394665, 0.027444916892153073, 0.027444916892153073, 0.027444916892153073, 0.027444916892153073, 0.02705836876691148, 0.02705836876691148, 0.02705836876691148, 0.02705836876691148, 0.025898724391186703, 0.026285272516428294, 0.026285272516428294, 0.023579435639737148, 0.023192887514495556, 0.025898724391186703, 0.026285272516428294, 0.026285272516428294, 0.026285272516428294, 0.02705836876691148, 0.025898724391186703, 0.024739080015461924, 0.02435253189022033, 0.02435253189022033, 0.02435253189022033, 0.02435253189022033, 0.02435253189022033, 0.02435253189022033, 0.02396598376497874, 0.02396598376497874, 0.024739080015461924, 0.02435253189022033, 0.023579435639737148, 0.022033243138770777, 0.022033243138770777, 0.02241979126401237, 0.02241979126401237, 0.02241979126401237, 0.02241979126401237, 0.02280633938925396, 0.02280633938925396, 0.02280633938925396, 0.023192887514495556, 0.023579435639737148, 0.023192887514495556, 0.02396598376497874, 0.023192887514495556, 0.023192887514495556, 0.023579435639737148, 0.02396598376497874, 0.023192887514495556, 0.023192887514495556, 0.023192887514495556, 0.023192887514495556, 0.023192887514495556, 0.023192887514495556, 0.023579435639737148, 0.023579435639737148, 0.02396598376497874, 0.947816003092385, 0.6903749516814843, 0.02551217626594511, 0.026671820641669886, 0.8005411673753382, 0.07151140316969462, 0.03556242752222652, 0.027831465017394665, 0.027831465017394665, 0.027831465017394665, 0.028218013142636257, 0.028604561267877852, 0.028991109393119444, 0.028991109393119444, 0.029764205643602628, 0.029764205643602628, 0.029377657518361036, 0.029377657518361036, 0.029377657518361036, 0.029764205643602628, 0.029764205643602628, 0.031696946269810594, 0.031310398144569, 0.030537301894085815, 0.030537301894085815, 0.030923850019327407, 0.031310398144569, 0.03208349439505218, 0.22613065326633167, 0.24816389640510245, 0.08658678005411674, 0.09818322381136452, 0.09741012756088133, 0.07383069192114418, 0.06919211441824508, 0.08078855817549285, 0.0889060688055663, 0.10475454194047158, 0.12292230382682644, 0.13954387321221493, 0.19172787011982992, 0.22110552763819097, 0.2558948589099343, 0.2717433320448396, 0.28875144955546966, 0.32006184770003865, 0.46192500966370315], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phosducin.gap.json b/pfam_gap_rates/Phosducin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04c8447e18a012988181b3dcddbe15d5272f4d14
--- /dev/null
+++ b/pfam_gap_rates/Phosducin.gap.json
@@ -0,0 +1 @@
+{"family": "Phosducin", "n_seqs": 608, "length": 257, "gap_rates": [0.9424342105263158, 0.9358552631578947, 0.9243421052631579, 0.9177631578947368, 0.912828947368421, 0.8963815789473685, 0.8865131578947368, 0.8782894736842105, 0.8651315789473685, 0.8536184210526315, 0.8273026315789473, 0.7976973684210527, 0.7680921052631579, 0.7664473684210527, 0.7664473684210527, 0.7648026315789473, 0.7648026315789473, 0.7648026315789473, 0.7664473684210527, 0.7648026315789473, 0.7631578947368421, 0.7615131578947368, 0.7615131578947368, 0.7615131578947368, 0.7615131578947368, 0.7615131578947368, 0.7615131578947368, 0.8256578947368421, 0.7960526315789473, 0.7911184210526315, 0.78125, 0.78125, 0.774671052631579, 0.7697368421052632, 0.7713815789473685, 0.7680921052631579, 0.7664473684210527, 0.7631578947368421, 0.7648026315789473, 0.7631578947368421, 0.7615131578947368, 0.7582236842105263, 0.7549342105263158, 0.7549342105263158, 0.7516447368421053, 0.75, 0.75, 0.7532894736842105, 0.7483552631578947, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Phosphodiest.gap.json b/pfam_gap_rates/Phosphodiest.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ed4f807ac481b8b5e3361cf1f47a05a0ad341f7
--- /dev/null
+++ b/pfam_gap_rates/Phosphodiest.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PknG_TPR.gap.json b/pfam_gap_rates/PknG_TPR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21ee4349227adc1919faab722e593d823664b78e
--- /dev/null
+++ b/pfam_gap_rates/PknG_TPR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Plus-3.gap.json b/pfam_gap_rates/Plus-3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..058faa632e591b45e0fdffa304e7cc86fb4172dd
--- /dev/null
+++ b/pfam_gap_rates/Plus-3.gap.json
@@ -0,0 +1 @@
+{"family": "Plus-3", "n_seqs": 538, "length": 120, "gap_rates": [0.3643122676579926, 0.1449814126394052, 0.10037174721189591, 0.07992565055762081, 0.0687732342007435, 0.0687732342007435, 0.06133828996282528, 0.05204460966542751, 0.03717472118959108, 0.03717472118959108, 0.03531598513011153, 0.031598513011152414, 0.024163568773234202, 0.024163568773234202, 0.020446096654275093, 0.020446096654275093, 0.7862453531598513, 0.020446096654275093, 0.01858736059479554, 0.020446096654275093, 0.01858736059479554, 0.01858736059479554, 0.03531598513011153, 0.026022304832713755, 0.020446096654275093, 0.01858736059479554, 0.024163568773234202, 0.016728624535315983, 0.016728624535315983, 0.016728624535315983, 0.016728624535315983, 0.01858736059479554, 0.01858736059479554, 0.020446096654275093, 0.020446096654275093, 0.020446096654275093, 0.9107806691449815, 0.949814126394052, 0.9052044609665427, 0.0762081784386617, 0.10594795539033457, 0.5353159851301115, 0.3587360594795539, 0.09293680297397769, 0.8717472118959108, 0.07992565055762081, 0.0762081784386617, 0.031598513011152414, 0.024163568773234202, 0.01486988847583643, 0.013011152416356878, 0.01486988847583643, 0.013011152416356878, 0.011152416356877323, 0.011152416356877323, 0.01858736059479554, 0.022304832713754646, 0.027881040892193308, 0.23048327137546468, 0.36059479553903345, 0.7899628252788105, 0.6895910780669146, 0.08736059479553904, 0.06133828996282528, 0.0724907063197026, 0.05018587360594796, 0.05390334572490706, 0.05947955390334572, 0.06133828996282528, 0.9256505576208178, 0.8252788104089219, 0.6970260223048327, 0.7453531598513011, 0.895910780669145, 0.8234200743494424, 0.17657992565055763, 0.17100371747211895, 0.1524163568773234, 0.12639405204460966, 0.05018587360594796, 0.031598513011152414, 0.031598513011152414, 0.03345724907063197, 0.03531598513011153, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.031598513011152414, 0.8661710037174721, 0.8401486988847584, 0.04275092936802974, 0.07063197026022305, 0.0724907063197026, 0.18401486988847585, 0.17286245353159851, 0.03345724907063197, 0.03345724907063197, 0.04275092936802974, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.04275092936802974, 0.04275092936802974, 0.04460966542750929, 0.04460966542750929, 0.04460966542750929, 0.04460966542750929, 0.05947955390334572, 0.06505576208178439, 0.07434944237918216, 0.08178438661710037, 0.08364312267657993, 0.08736059479553904, 0.09665427509293681, 0.15985130111524162, 0.27695167286245354, 0.4107806691449814, 0.8754646840148699], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PmoA.gap.json b/pfam_gap_rates/PmoA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f829ff804987f4dd048ce2a254b7650bb9fd2eae
--- /dev/null
+++ b/pfam_gap_rates/PmoA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pmp3.gap.json b/pfam_gap_rates/Pmp3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d96b3adfa7f3bd26625fd6cd91749fcf96be8a43
--- /dev/null
+++ b/pfam_gap_rates/Pmp3.gap.json
@@ -0,0 +1 @@
+{"family": "Pmp3", "n_seqs": 1012, "length": 50, "gap_rates": [0.6156126482213439, 0.23221343873517786, 0.12845849802371542, 0.10276679841897234, 0.08102766798418973, 0.07509881422924901, 0.06521739130434782, 0.06126482213438735, 0.05731225296442688, 0.05039525691699605, 0.046442687747035576, 0.04743083003952569, 0.03162055335968379, 0.029644268774703556, 0.030632411067193676, 0.029644268774703556, 0.030632411067193676, 0.02766798418972332, 0.05533596837944664, 0.022727272727272728, 0.018774703557312252, 0.7312252964426877, 0.016798418972332016, 0.016798418972332016, 0.011857707509881422, 0.03557312252964427, 0.010869565217391304, 0.009881422924901186, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.009881422924901186, 0.009881422924901186, 0.009881422924901186, 0.008893280632411068, 0.009881422924901186, 0.011857707509881422, 0.015810276679841896, 0.014822134387351778, 0.016798418972332016, 0.017786561264822136, 0.021739130434782608, 0.023715415019762844, 0.02766798418972332, 0.02766798418972332, 0.029644268774703556, 0.044466403162055336, 0.05632411067193676, 0.16699604743083005, 0.7312252964426877], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Porin_3.gap.json b/pfam_gap_rates/Porin_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b463d3ec4c850d68aff8417ec940951461ba615b
--- /dev/null
+++ b/pfam_gap_rates/Porin_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pox_A32.gap.json b/pfam_gap_rates/Pox_A32.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af1c2127188e1cc656ca638fe01889a04f6424c1
--- /dev/null
+++ b/pfam_gap_rates/Pox_A32.gap.json
@@ -0,0 +1 @@
+{"family": "Pox_A32", "n_seqs": 838, "length": 210, "gap_rates": [0.9498806682577565, 0.9474940334128878, 0.9474940334128878, 0.9463007159904535, 0.9427207637231504, 0.9331742243436754, 0.931980906921241, 0.931980906921241, 0.9307875894988067, 0.9307875894988067, 0.9272076372315036, 0.9260143198090692, 0.9260143198090692, 0.9260143198090692, 0.9260143198090692, 0.9248210023866349, 0.9248210023866349, 0.9248210023866349, 0.9248210023866349, 0.9248210023866349, 0.9248210023866349, 0.9260143198090692, 0.9260143198090692, 0.9260143198090692, 0.9260143198090692, 0.9260143198090692, 0.9248210023866349, 0.9248210023866349, 0.9260143198090692, 0.9260143198090692, 0.9248210023866349, 0.9260143198090692, 0.9248210023866349, 0.9248210023866349, 0.9248210023866349, 0.9272076372315036, 0.9260143198090692, 0.9260143198090692, 0.9260143198090692, 0.9272076372315036, 0.9284009546539379, 0.9284009546539379, 0.9284009546539379, 0.9260143198090692, 0.9248210023866349, 0.9236276849642004, 0.9224343675417661, 0.9307875894988067, 0.931980906921241, 0.9212410501193318, 0.9212410501193318, 0.918854415274463, 0.918854415274463, 0.9224343675417661, 0.9236276849642004, 0.9200477326968973, 0.9224343675417661, 0.9224343675417661, 0.9176610978520287, 0.9152744630071599, 0.9176610978520287, 0.9200477326968973, 0.9212410501193318, 0.9200477326968973, 0.918854415274463, 0.9128878281622912, 0.9116945107398569, 0.9045346062052506, 0.8949880668257757, 0.8818615751789977, 0.860381861575179, 0.8400954653937948, 0.8138424821002387, 0.7589498806682577, 0.6443914081145584, 0.17780429594272076, 0.14797136038186157, 0.08591885441527446, 0.07995226730310262, 0.07637231503579953, 0.07637231503579953, 0.07398568019093078, 0.06921241050119331, 0.2494033412887828, 0.21360381861575178, 0.21241050119331742, 0.21241050119331742, 0.04295942720763723, 0.03699284009546539, 0.3520286396181384, 0.36515513126491644, 0.3460620525059666, 0.050119331742243436, 0.046539379474940336, 0.031026252983293555, 0.010739856801909307, 0.008353221957040573, 0.00477326968973747, 0.00477326968973747, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.0477326968973747, 0.324582338902148, 0.324582338902148, 0.32100238663484487, 0.01909307875894988, 0.0, 0.8997613365155132, 0.9009546539379475, 0.8997613365155132, 0.0011933174224343676, 0.8687350835322196, 0.8687350835322196, 0.8663484486873508, 0.0, 0.0011933174224343676, 0.01909307875894988, 0.0011933174224343676, 0.0, 0.0, 0.0, 0.0011933174224343676, 0.0011933174224343676, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011933174224343676, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.003579952267303103, 0.00477326968973747, 0.0059665871121718375, 0.0059665871121718375, 0.0059665871121718375, 0.0059665871121718375, 0.0059665871121718375, 0.0059665871121718375, 0.0059665871121718375, 0.0059665871121718375, 0.007159904534606206, 0.007159904534606206, 0.011933174224343675, 0.010739856801909307, 0.013126491646778043, 0.7505966587112172, 0.015513126491646777, 0.015513126491646777, 0.015513126491646777, 0.016706443914081145, 0.016706443914081145, 0.33651551312649164, 0.32816229116945106, 0.016706443914081145, 0.022673031026252982, 0.022673031026252982, 0.022673031026252982, 0.031026252983293555, 0.03341288782816229, 0.03699284009546539, 0.050119331742243436, 0.07517899761336516, 0.0883054892601432, 0.09069212410501193, 0.10620525059665871, 0.11813842482100238, 0.1610978520286396, 0.17422434367541767, 0.2064439140811456, 0.20883054892601433, 0.21479713603818615, 0.27088305489260145, 0.3353221957040573, 0.34844868735083534, 0.3568019093078759, 0.3568019093078759, 0.35799522673031026, 0.35799522673031026, 0.3627684964200477, 0.36515513126491644, 0.36634844868735084, 0.3794749403341289, 0.38066825775656327, 0.3818615751789976, 0.3818615751789976, 0.3818615751789976, 0.383054892601432, 0.383054892601432, 0.3914081145584726, 0.39737470167064437, 0.4081145584725537, 0.431980906921241, 0.44630071599045346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pox_MCEL.gap.json b/pfam_gap_rates/Pox_MCEL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82ce835a190dbcf6f2cc0a24cd34057eadb220f8
--- /dev/null
+++ b/pfam_gap_rates/Pox_MCEL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PqiA.gap.json b/pfam_gap_rates/PqiA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec5a4d6f0486e7a63903f7df8cb150d8ab66944f
--- /dev/null
+++ b/pfam_gap_rates/PqiA.gap.json
@@ -0,0 +1 @@
+{"family": "PqiA", "n_seqs": 687, "length": 162, "gap_rates": [0.7379912663755459, 0.5109170305676856, 0.4119359534206696, 0.3304221251819505, 0.2940320232896652, 0.264919941775837, 0.2328966521106259, 0.2197962154294032, 0.20378457059679767, 0.20378457059679767, 0.19796215429403202, 0.1965065502183406, 0.19359534206695778, 0.19068413391557495, 0.18922852983988356, 0.18922852983988356, 0.18922852983988356, 0.18922852983988356, 0.1848617176128093, 0.1848617176128093, 0.1804949053857351, 0.1804949053857351, 0.17903930131004367, 0.17758369723435224, 0.17612809315866085, 0.1717612809315866, 0.1703056768558952, 0.16448326055312956, 0.16302765647743814, 0.9374090247452693, 0.1586608442503639, 0.15138282387190685, 0.14556040756914118, 0.12954876273653565, 0.11790393013100436, 0.1091703056768559, 0.09170305676855896, 0.07714701601164484, 0.07278020378457059, 0.07278020378457059, 0.07278020378457059, 0.07132459970887918, 0.07423580786026202, 0.07132459970887918, 0.07132459970887918, 0.07132459970887918, 0.06695778748180495, 0.06841339155749636, 0.08005822416302766, 0.09315866084425037, 0.053857350800582245, 0.050946142649199416, 0.048034934497816595, 0.03784570596797671, 0.026200873362445413, 0.024745269286754003, 0.024745269286754003, 0.023289665211062592, 0.023289665211062592, 0.023289665211062592, 0.023289665211062592, 0.023289665211062592, 0.023289665211062592, 0.023289665211062592, 0.023289665211062592, 0.023289665211062592, 0.023289665211062592, 0.021834061135371178, 0.021834061135371178, 0.020378457059679767, 0.020378457059679767, 0.020378457059679767, 0.020378457059679767, 0.020378457059679767, 0.020378457059679767, 0.020378457059679767, 0.023289665211062592, 0.021834061135371178, 0.023289665211062592, 0.2096069868995633, 0.1819505094614265, 0.21251819505094613, 0.9155749636098981, 0.8850072780203785, 0.27365356622998543, 0.2197962154294032, 0.17612809315866085, 0.14847161572052403, 0.0975254730713246, 0.026200873362445413, 0.7030567685589519, 0.8777292576419214, 0.8457059679767104, 0.6666666666666666, 0.027656477438136828, 0.027656477438136828, 0.024745269286754003, 0.026200873362445413, 0.026200873362445413, 0.024745269286754003, 0.024745269286754003, 0.024745269286754003, 0.023289665211062592, 0.021834061135371178, 0.021834061135371178, 0.021834061135371178, 0.021834061135371178, 0.021834061135371178, 0.017467248908296942, 0.017467248908296942, 0.017467248908296942, 0.017467248908296942, 0.017467248908296942, 0.018922852983988356, 0.018922852983988356, 0.020378457059679767, 0.018922852983988356, 0.018922852983988356, 0.018922852983988356, 0.023289665211062592, 0.027656477438136828, 0.03202328966521106, 0.039301310043668124, 0.056768558951965066, 0.06259097525473072, 0.07132459970887918, 0.06986899563318777, 0.07423580786026202, 0.07714701601164484, 0.08442503639010189, 0.08733624454148471, 0.09024745269286755, 0.09315866084425037, 0.10771470160116449, 0.11644832605531295, 0.1222707423580786, 0.12663755458515283, 0.12663755458515283, 0.12954876273653565, 0.12954876273653565, 0.13100436681222707, 0.13100436681222707, 0.1339155749636099, 0.13537117903930132, 0.13682678311499272, 0.13828238719068414, 0.13973799126637554, 0.14264919941775836, 0.14992721979621543, 0.17321688500727803, 0.26346433770014555, 0.2328966521106259, 0.25181950509461426, 0.2765647743813683, 0.2867540029112082, 0.2940320232896652, 0.2940320232896652, 0.29839883551673946, 0.30858806404657935, 0.32751091703056767, 0.4032023289665211, 0.6768558951965066], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Prenyltrans.gap.json b/pfam_gap_rates/Prenyltrans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12fe3f796e96919ae74ebb1d745f35a07ad34021
--- /dev/null
+++ b/pfam_gap_rates/Prenyltrans.gap.json
@@ -0,0 +1 @@
+{"family": "Prenyltrans", "n_seqs": 5000, "length": 49, "gap_rates": [0.7914, 0.5716, 0.4564, 0.3676, 0.3048, 0.2388, 0.198, 0.1636, 0.1454, 0.122, 0.113, 0.1026, 0.0886, 0.0756, 0.0844, 0.7424, 0.0738, 0.0606, 0.055, 0.032, 0.031, 0.0382, 0.0542, 0.0648, 0.0828, 0.0822, 0.0802, 0.9336, 0.9496, 0.943, 0.8958, 0.084, 0.1048, 0.086, 0.0866, 0.0882, 0.0878, 0.0902, 0.0934, 0.0956, 0.1062, 0.1194, 0.1328, 0.15, 0.1742, 0.209, 0.2532, 0.3178, 0.5796], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PrlF_antitoxin.gap.json b/pfam_gap_rates/PrlF_antitoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2da271d451c750dfcdc782102ab5f473030dce4
--- /dev/null
+++ b/pfam_gap_rates/PrlF_antitoxin.gap.json
@@ -0,0 +1 @@
+{"family": "PrlF_antitoxin", "n_seqs": 118, "length": 102, "gap_rates": [0.7033898305084746, 0.1440677966101695, 0.059322033898305086, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.03389830508474576, 0.03389830508474576, 0.7203389830508474, 0.03389830508474576, 0.2542372881355932, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.0423728813559322, 0.0423728813559322, 0.059322033898305086, 0.1694915254237288, 0.0847457627118644, 0.05084745762711865, 0.0423728813559322, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.0847457627118644, 0.09322033898305085, 0.1271186440677966, 0.2711864406779661, 0.9152542372881356, 0.3135593220338983, 0.3389830508474576, 0.3644067796610169, 0.3898305084745763, 0.4661016949152542, 0.4915254237288136, 0.4915254237288136, 0.4915254237288136, 0.4915254237288136, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5084745762711864, 0.5084745762711864, 0.5084745762711864, 0.5084745762711864, 0.5084745762711864, 0.5338983050847458, 0.6271186440677966, 0.5338983050847458, 0.5338983050847458, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.6440677966101694, 0.7711864406779662, 0.6440677966101694, 0.5423728813559322, 0.9067796610169492, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.5423728813559322, 0.6016949152542372, 0.7542372881355932], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Profilin.gap.json b/pfam_gap_rates/Profilin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5aa8fcaf06580f7f9ec7435f9428bfdfb975da8
--- /dev/null
+++ b/pfam_gap_rates/Profilin.gap.json
@@ -0,0 +1 @@
+{"family": "Profilin", "n_seqs": 697, "length": 155, "gap_rates": [0.4763271162123386, 0.3113342898134864, 0.24390243902439024, 0.23385939741750358, 0.22094691535150646, 0.2109038737446198, 0.20373027259684362, 0.20229555236728838, 0.38450502152080346, 0.18938307030129126, 0.1750358680057389, 0.16212338593974174, 0.15351506456241032, 0.15494978479196556, 0.14634146341463414, 0.836441893830703, 0.8421807747489239, 0.8005738880918221, 0.1449067431850789, 0.12769010043041606, 0.13629842180774748, 0.12482065997130559, 0.12482065997130559, 0.12482065997130559, 0.12195121951219512, 0.12195121951219512, 0.12338593974175036, 0.12195121951219512, 0.9354375896700143, 0.12195121951219512, 0.12051649928263988, 0.6025824964131994, 0.11764705882352941, 0.10903873744619799, 0.11190817790530846, 0.13199426111908177, 0.11477761836441894, 0.1133428981348637, 0.10616929698708752, 0.10043041606886657, 0.8708751793400287, 0.8923959827833573, 0.866571018651363, 0.09469153515064563, 0.07317073170731707, 0.9497847919655668, 0.9483500717360115, 0.06456241032998565, 0.8005738880918221, 0.06169296987087518, 0.05595408895265423, 0.058823529411764705, 0.05308464849354376, 0.047345767575322814, 0.04591104734576758, 0.043041606886657105, 0.040172166427546625, 0.040172166427546625, 0.03730272596843615, 0.11047345767575323, 0.10616929698708752, 0.040172166427546625, 0.8637015781922525, 0.9325681492109039, 0.9081779053084649, 0.8220946915351507, 0.16642754662840745, 0.10043041606886657, 0.05308464849354376, 0.03730272596843615, 0.03299856527977044, 0.03156384505021521, 0.03012912482065997, 0.028694404591104734, 0.03156384505021521, 0.03012912482065997, 0.03012912482065997, 0.027259684361549498, 0.028694404591104734, 0.028694404591104734, 0.027259684361549498, 0.028694404591104734, 0.03156384505021521, 0.03012912482065997, 0.03012912482065997, 0.03012912482065997, 0.03012912482065997, 0.03156384505021521, 0.03443328550932568, 0.890961262553802, 0.9053084648493543, 0.9067431850789096, 0.8995695839311334, 0.8880918220946915, 0.035868005738880916, 0.9311334289813487, 0.05308464849354376, 0.03873744619799139, 0.8651362984218077, 0.6255380200860832, 0.03730272596843615, 0.03730272596843615, 0.03730272596843615, 0.9383070301291249, 0.03873744619799139, 0.8436154949784792, 0.04591104734576758, 0.047345767575322814, 0.05308464849354376, 0.9354375896700143, 0.9167862266857962, 0.06599713055954089, 0.9053084648493543, 0.05164992826398852, 0.05164992826398852, 0.05164992826398852, 0.05308464849354376, 0.05595408895265423, 0.058823529411764705, 0.06599713055954089, 0.06743185078909612, 0.07173601147776183, 0.07890961262553801, 0.08464849354375897, 0.08751793400286945, 0.09038737446197992, 0.09038737446197992, 0.09469153515064563, 0.09469153515064563, 0.09612625538020086, 0.0975609756097561, 0.10043041606886657, 0.13916786226685796, 0.9124820659971306, 0.12625538020086083, 0.12338593974175036, 0.12338593974175036, 0.12625538020086083, 0.13486370157819225, 0.13773314203730272, 0.13916786226685796, 0.13916786226685796, 0.14203730272596843, 0.14203730272596843, 0.1449067431850789, 0.15064562410329985, 0.15925394548063126, 0.16642754662840745, 0.17360114777618366, 0.1793400286944046, 0.19368723098995697, 0.20946915351506457, 0.24533715925394547, 0.30416068866571017, 0.5308464849354376], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Proton_antipo_M.gap.json b/pfam_gap_rates/Proton_antipo_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bf64b3089b60e34ac0fc5f7e79ea1dd2aad94d5
--- /dev/null
+++ b/pfam_gap_rates/Proton_antipo_M.gap.json
@@ -0,0 +1 @@
+{"family": "Proton_antipo_M", "n_seqs": 5000, "length": 321, "gap_rates": [0.35, 0.2, 0.1108, 0.1048, 0.0984, 0.093, 0.091, 0.0906, 0.0904, 0.0894, 0.0882, 0.0884, 0.088, 0.088, 0.0872, 0.0872, 0.087, 0.0856, 0.085, 0.0846, 0.084, 0.0838, 0.0844, 0.0848, 0.0852, 0.1282, 0.0916, 0.0936, 0.4244, 0.0988, 0.0862, 0.0834, 0.0826, 0.081, 0.0808, 0.0802, 0.0798, 0.0794, 0.0792, 0.0782, 0.0782, 0.0774, 0.0782, 0.0774, 0.0776, 0.0774, 0.0774, 0.0774, 0.0752, 0.075, 0.0752, 0.0762, 0.0766, 0.0804, 0.0808, 0.0804, 0.0802, 0.081, 0.0814, 0.0826, 0.0818, 0.921, 0.9396, 0.8812, 0.0976, 0.0896, 0.0886, 0.0866, 0.088, 0.088, 0.0882, 0.0898, 0.0936, 0.095, 0.441, 0.7368, 0.8434, 0.8866, 0.9114, 0.9234, 0.892, 0.8614, 0.8154, 0.6466, 0.3016, 0.2652, 0.1496, 0.1388, 0.1238, 0.1184, 0.1128, 0.1096, 0.0942, 0.0834, 0.0794, 0.0776, 0.0774, 0.0768, 0.0764, 0.0764, 0.076, 0.0754, 0.076, 0.0776, 0.078, 0.0754, 0.0748, 0.0746, 0.0742, 0.0742, 0.075, 0.0742, 0.074, 0.0768, 0.0686, 0.07, 0.0696, 0.069, 0.069, 0.0692, 0.401, 0.0682, 0.0668, 0.0728, 0.0714, 0.071, 0.071, 0.0708, 0.0708, 0.0704, 0.07, 0.07, 0.67, 0.2204, 0.074, 0.1274, 0.0724, 0.0712, 0.0702, 0.0694, 0.0692, 0.069, 0.0692, 0.0688, 0.0686, 0.0684, 0.0754, 0.075, 0.0748, 0.0748, 0.076, 0.0754, 0.078, 0.7568, 0.9044, 0.9426, 0.8848, 0.4862, 0.4158, 0.1266, 0.1064, 0.0978, 0.088, 0.0832, 0.0834, 0.0806, 0.0688, 0.0678, 0.0676, 0.0668, 0.0654, 0.0652, 0.0644, 0.0644, 0.0646, 0.064, 0.063, 0.0624, 0.0624, 0.0624, 0.0618, 0.062, 0.0622, 0.062, 0.0624, 0.0622, 0.062, 0.0624, 0.0616, 0.0622, 0.0624, 0.062, 0.0618, 0.062, 0.0622, 0.062, 0.062, 0.0616, 0.0614, 0.0614, 0.061, 0.0614, 0.0612, 0.0604, 0.0608, 0.0608, 0.0612, 0.0614, 0.0622, 0.062, 0.8824, 0.9058, 0.9264, 0.9422, 0.916, 0.8916, 0.8692, 0.3, 0.2144, 0.217, 0.0862, 0.128, 0.1202, 0.0756, 0.0734, 0.0702, 0.067, 0.0668, 0.0662, 0.0656, 0.0658, 0.0664, 0.0668, 0.0658, 0.0658, 0.066, 0.0656, 0.0652, 0.065, 0.0656, 0.0652, 0.0654, 0.066, 0.0664, 0.2868, 0.0796, 0.0732, 0.2732, 0.1108, 0.1094, 0.1162, 0.2446, 0.9496, 0.9476, 0.0934, 0.0932, 0.0938, 0.0948, 0.0946, 0.0958, 0.0952, 0.095, 0.096, 0.0962, 0.1006, 0.098, 0.0996, 0.099, 0.0968, 0.0962, 0.0954, 0.0962, 0.0954, 0.0958, 0.0962, 0.0946, 0.095, 0.0944, 0.0946, 0.0948, 0.095, 0.0958, 0.096, 0.0964, 0.1068, 0.0986, 0.0992, 0.0982, 0.099, 0.0992, 0.0998, 0.1, 0.1008, 0.101, 0.1016, 0.1024, 0.1036, 0.1058, 0.1094, 0.1094, 0.1108, 0.115, 0.1228, 0.1374, 0.1552, 0.1782, 0.2004, 0.226, 0.2456, 0.259, 0.2718, 0.2864, 0.304, 0.6886, 0.3664, 0.393, 0.4356, 0.4846, 0.5656, 0.6546, 0.853], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Prp18.gap.json b/pfam_gap_rates/Prp18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..439c6a536dc4601ead3cb5c341c77446779ccc51
--- /dev/null
+++ b/pfam_gap_rates/Prp18.gap.json
@@ -0,0 +1 @@
+{"family": "Prp18", "n_seqs": 352, "length": 143, "gap_rates": [0.26420454545454547, 0.1590909090909091, 0.14772727272727273, 0.14488636363636365, 0.14204545454545456, 0.13636363636363635, 0.13352272727272727, 0.13068181818181818, 0.13068181818181818, 0.1278409090909091, 0.1278409090909091, 0.125, 0.12215909090909091, 0.125, 0.125, 0.125, 0.125, 0.13352272727272727, 0.12215909090909091, 0.16193181818181818, 0.22443181818181818, 0.20738636363636365, 0.16193181818181818, 0.13920454545454544, 0.13068181818181818, 0.10227272727272728, 0.09659090909090909, 0.07670454545454546, 0.07954545454545454, 0.07386363636363637, 0.0625, 0.05965909090909091, 0.056818181818181816, 0.05397727272727273, 0.05397727272727273, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05397727272727273, 0.05397727272727273, 0.05397727272727273, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.048295454545454544, 0.05113636363636364, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.036931818181818184, 0.03409090909090909, 0.03409090909090909, 0.036931818181818184, 0.036931818181818184, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.04261363636363636, 0.04261363636363636, 0.04261363636363636, 0.04261363636363636, 0.04261363636363636, 0.04261363636363636, 0.04261363636363636, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.05113636363636364, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.06534090909090909, 0.0625, 0.0625, 0.0625, 0.9090909090909091, 0.0625, 0.07386363636363637, 0.056818181818181816, 0.05965909090909091, 0.05965909090909091, 0.05965909090909091, 0.05965909090909091, 0.05965909090909091, 0.05965909090909091, 0.0625, 0.07102272727272728, 0.06818181818181818, 0.06818181818181818, 0.06534090909090909, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.07102272727272728, 0.07102272727272728, 0.07670454545454546, 0.07670454545454546, 0.08238636363636363, 0.08238636363636363, 0.08806818181818182, 0.08806818181818182, 0.09090909090909091, 0.09375, 0.10227272727272728, 0.12215909090909091, 0.1846590909090909, 0.21306818181818182, 0.7102272727272727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PseudoU_synth_1.gap.json b/pfam_gap_rates/PseudoU_synth_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3292444635bd399a2b2e242c1dd02316173081e3
--- /dev/null
+++ b/pfam_gap_rates/PseudoU_synth_1.gap.json
@@ -0,0 +1 @@
+{"family": "PseudoU_synth_1", "n_seqs": 4572, "length": 126, "gap_rates": [0.5916447944007, 0.4759405074365704, 0.31758530183727035, 0.09492563429571303, 0.049650043744531934, 0.04199475065616798, 0.04133858267716536, 0.03937007874015748, 0.031714785651793524, 0.030183727034120734, 0.029090113735783026, 0.029090113735783026, 0.3829833770778653, 0.03674540682414698, 0.3779527559055118, 0.37270341207349084, 0.03499562554680665, 0.030183727034120734, 0.030183727034120734, 0.02974628171478565, 0.0284339457567804, 0.9039807524059492, 0.8101487314085739, 0.02252843394575678, 0.019247594050743656, 0.01837270341207349, 0.01837270341207349, 0.01727909011373578, 0.0168416447944007, 0.0168416447944007, 0.0168416447944007, 0.01552930883639545, 0.014873140857392825, 0.014873140857392825, 0.014654418197725285, 0.014654418197725285, 0.3425196850393701, 0.33092738407699035, 0.30621172353455817, 0.27296587926509186, 0.03958880139982502, 0.43919510061242345, 0.4798775153105862, 0.47069116360454943, 0.43197725284339455, 0.336832895888014, 0.8672353455818023, 0.8762029746281714, 0.8919510061242345, 0.9129483814523185, 0.9302274715660542, 0.9416010498687664, 0.9472878390201225, 0.9350393700787402, 0.9241032370953631, 0.9011373578302713, 0.8818897637795275, 0.8713910761154856, 0.8589238845144357, 0.006780402449693788, 0.004593175853018373, 0.0037182852143482063, 0.003499562554680665, 0.003499562554680665, 0.0032808398950131233, 0.003499562554680665, 0.003499562554680665, 0.003499562554680665, 0.003499562554680665, 0.003499562554680665, 0.0032808398950131233, 0.002405949256342957, 0.004593175853018373, 0.003499562554680665, 0.0037182852143482063, 0.003937007874015748, 0.004155730533683289, 0.004155730533683289, 0.004593175853018373, 0.004811898512685914, 0.88167104111986, 0.013779527559055118, 0.007217847769028871, 0.01968503937007874, 0.03237095363079615, 0.014654418197725285, 0.026465441819772527, 0.01727909011373578, 0.017497812773403325, 0.01706036745406824, 0.017716535433070866, 0.020341207349081365, 0.01990376202974628, 0.020341207349081365, 0.02230971128608924, 0.023184601924759404, 0.022747156605424323, 0.02252843394575678, 0.0284339457567804, 0.03237095363079615, 0.031933508311461065, 0.027777777777777776, 0.9044181977252843, 0.06386701662292213, 0.09886264216972879, 0.10695538057742782, 0.9424759405074365, 0.4641294838145232, 0.03937007874015748, 0.03412073490813648, 0.033027121609798774, 0.03455818022747156, 0.03565179352580927, 0.03718285214348206, 0.0415573053368329, 0.04374453193350831, 0.04921259842519685, 0.05533683289588801, 0.3716097987751531, 0.06277340332458442, 0.06605424321959755, 0.07633420822397201, 0.09492563429571303, 0.11832895888013999, 0.1388888888888889, 0.4840332458442695], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PurA.gap.json b/pfam_gap_rates/PurA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dee36c127d8b83adcddad7294a2bb1ac5abd8453
--- /dev/null
+++ b/pfam_gap_rates/PurA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pyr_redox_3.gap.json b/pfam_gap_rates/Pyr_redox_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d3e9f29df0c25a9b9dd7befc39ae7059b64e79b
--- /dev/null
+++ b/pfam_gap_rates/Pyr_redox_3.gap.json
@@ -0,0 +1 @@
+{"family": "Pyr_redox_3", "n_seqs": 2271, "length": 341, "gap_rates": [0.3333333333333333, 0.17393218846323205, 0.17040951122853368, 0.1695288419198591, 0.1690885072655218, 0.1686481726111845, 0.1686481726111845, 0.1686481726111845, 0.166446499339498, 0.166446499339498, 0.16556583003082342, 0.16336415675913693, 0.16336415675913693, 0.16336415675913693, 0.16336415675913693, 0.16292382210479964, 0.16248348745046234, 0.16248348745046234, 0.16292382210479964, 0.16248348745046234, 0.16336415675913693, 0.9299867899603699, 0.678996036988111, 0.19903126376045796, 0.16556583003082342, 0.16336415675913693, 0.16160281814178776, 0.16072214883311317, 0.16424482606781154, 0.16248348745046234, 0.16072214883311317, 0.43593130779392336, 0.16380449141347425, 0.16424482606781154, 0.16512549537648613, 0.16600616468516072, 0.17261118450022017, 0.1787758696609423, 0.1787758696609423, 0.9476001761338617, 0.9396741523557904, 0.17481285777190664, 0.17349185380889476, 0.18361955085865259, 0.20871862615587847, 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\ No newline at end of file
diff --git a/pfam_gap_rates/QLQ.gap.json b/pfam_gap_rates/QLQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f3b77bbbe4ea94209ee2c03d4bfc345f104ae07
--- /dev/null
+++ b/pfam_gap_rates/QLQ.gap.json
@@ -0,0 +1 @@
+{"family": "QLQ", "n_seqs": 493, "length": 36, "gap_rates": [0.34279918864097364, 0.060851926977687626, 0.02636916835699797, 0.02231237322515213, 0.014198782961460446, 0.008113590263691683, 0.008113590263691683, 0.004056795131845842, 0.004056795131845842, 0.004056795131845842, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004056795131845842, 0.9391480730223124, 0.004056795131845842, 0.010141987829614604, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.04259634888438134, 0.0872210953346856, 0.10547667342799188, 0.15212981744421908, 0.5111561866125761], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RAC_head.gap.json b/pfam_gap_rates/RAC_head.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39fc68c9bebdaa8d1e3e070dde8230e3257e973b
--- /dev/null
+++ b/pfam_gap_rates/RAC_head.gap.json
@@ -0,0 +1 @@
+{"family": "RAC_head", "n_seqs": 181, "length": 100, "gap_rates": [0.06629834254143646, 0.055248618784530384, 0.011049723756906077, 0.011049723756906077, 0.0055248618784530384, 0.011049723756906077, 0.0055248618784530384, 0.011049723756906077, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.011049723756906077, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.011049723756906077, 0.7955801104972375, 0.13812154696132597, 0.1270718232044199, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.27071823204419887, 0.011049723756906077, 0.0055248618784530384, 0.0055248618784530384, 0.35359116022099446, 0.35359116022099446, 0.4530386740331492, 0.4419889502762431, 0.11049723756906077, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.016574585635359115, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.049723756906077346, 0.9226519337016574, 0.3259668508287293, 0.9447513812154696, 0.07734806629834254, 0.049723756906077346, 0.049723756906077346, 0.03867403314917127, 0.011049723756906077, 0.011049723756906077, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.022099447513812154, 0.022099447513812154, 0.06077348066298342, 0.0718232044198895, 0.08839779005524862, 0.08839779005524862, 0.12154696132596685, 0.425414364640884, 0.4419889502762431, 0.20994475138121546, 0.2154696132596685, 0.2265193370165746, 0.2596685082872928, 0.281767955801105, 0.32044198895027626, 0.3314917127071823, 0.36464088397790057, 0.43646408839779005, 0.5414364640883977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RALF.gap.json b/pfam_gap_rates/RALF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8710805a37fdb2d13c6e1366e523c6c422774bb1
--- /dev/null
+++ b/pfam_gap_rates/RALF.gap.json
@@ -0,0 +1 @@
+{"family": "RALF", "n_seqs": 351, "length": 74, "gap_rates": [0.8774928774928775, 0.6353276353276354, 0.5698005698005698, 0.5327635327635327, 0.48717948717948717, 0.4415954415954416, 0.4188034188034188, 0.37606837606837606, 0.3418803418803419, 0.30484330484330485, 0.28774928774928776, 0.2849002849002849, 0.26495726495726496, 0.2535612535612536, 0.23931623931623933, 0.8062678062678063, 0.886039886039886, 0.7492877492877493, 0.5128205128205128, 0.19373219373219372, 0.150997150997151, 0.1282051282051282, 0.10541310541310542, 0.07692307692307693, 0.07407407407407407, 0.06552706552706553, 0.06267806267806268, 0.06267806267806268, 0.06267806267806268, 0.05698005698005698, 0.05698005698005698, 0.1396011396011396, 0.11965811965811966, 0.1111111111111111, 0.09686609686609686, 0.045584045584045586, 0.05128205128205128, 0.9031339031339032, 0.7578347578347578, 0.06552706552706553, 0.07122507122507123, 0.05128205128205128, 0.06552706552706553, 0.2022792022792023, 0.18233618233618235, 0.1339031339031339, 0.9373219373219374, 0.8547008547008547, 0.07977207977207977, 0.9316239316239316, 0.9031339031339032, 0.045584045584045586, 0.2706552706552707, 0.8803418803418803, 0.039886039886039885, 0.019943019943019943, 0.019943019943019943, 0.019943019943019943, 0.022792022792022793, 0.02564102564102564, 0.022792022792022793, 0.02849002849002849, 0.02849002849002849, 0.03418803418803419, 0.03418803418803419, 0.037037037037037035, 0.037037037037037035, 0.042735042735042736, 0.05128205128205128, 0.05413105413105413, 0.05413105413105413, 0.05982905982905983, 0.07407407407407407, 0.3333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RBP_receptor.gap.json b/pfam_gap_rates/RBP_receptor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be0fe680d76759e0f4d20cd43f3cf3cc4ba9366d
--- /dev/null
+++ b/pfam_gap_rates/RBP_receptor.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/REPA_OB_2.gap.json b/pfam_gap_rates/REPA_OB_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90b3f509174cc4bf3919754566945909db08bdc4
--- /dev/null
+++ b/pfam_gap_rates/REPA_OB_2.gap.json
@@ -0,0 +1 @@
+{"family": "REPA_OB_2", "n_seqs": 647, "length": 111, "gap_rates": [0.517774343122102, 0.4126738794435858, 0.3848531684698609, 0.35857805255023184, 0.3446676970633694, 0.321483771251932, 0.2921174652241113, 0.24574961360123648, 0.19319938176197837, 0.13137557959814528, 0.08500772797527048, 0.07418856259659969, 0.05873261205564142, 0.05100463678516229, 0.04791344667697063, 0.04791344667697063, 0.04791344667697063, 0.04791344667697063, 0.04482225656877898, 0.04636785162287481, 0.04791344667697063, 0.04791344667697063, 0.0401854714064915, 0.04327666151468315, 0.04482225656877898, 0.04327666151468315, 0.05100463678516229, 0.03709428129829984, 0.03400309119010819, 0.030911901081916538, 0.030911901081916538, 0.03709428129829984, 0.0401854714064915, 0.03554868624420402, 0.3894899536321484, 0.07882534775888717, 0.06027820710973725, 0.02009273570324575, 0.015455950540958269, 0.013910355486862442, 0.013910355486862442, 0.013910355486862442, 0.013910355486862442, 0.013910355486862442, 0.012364760432766615, 0.010819165378670788, 0.0077279752704791345, 0.010819165378670788, 0.015455950540958269, 0.04636785162287481, 0.00927357032457496, 0.00463678516228748, 0.0061823802163833074, 0.0061823802163833074, 0.0077279752704791345, 0.0077279752704791345, 0.0077279752704791345, 0.0061823802163833074, 0.0061823802163833074, 0.8454404945904173, 0.8562596599690881, 0.8516228748068007, 0.8408037094281299, 0.017001545595054096, 0.00927357032457496, 0.012364760432766615, 0.015455950540958269, 0.03400309119010819, 0.017001545595054096, 0.5950540958268934, 0.7310664605873262, 0.8562596599690881, 0.9428129829984544, 0.8948995363214838, 0.848531684698609, 0.6707882534775889, 0.5162287480680062, 0.02009273570324575, 0.021638330757341576, 0.023183925811437404, 0.02472952086553323, 0.021638330757341576, 0.02472952086553323, 0.02627511591962906, 0.03554868624420402, 0.03863987635239567, 0.04636785162287481, 0.04791344667697063, 0.04945904173106646, 0.05564142194744977, 0.0571870170015456, 0.05873261205564142, 0.061823802163833076, 0.06646058732612056, 0.06646058732612056, 0.0695517774343122, 0.8361669242658424, 0.09582689335394126, 0.10819165378670788, 0.1143740340030912, 0.12210200927357033, 0.1375579598145286, 0.16383307573415765, 0.1839258114374034, 0.1901081916537867, 0.20247295208655333, 0.21792890262751158, 0.23956723338485317, 0.26738794435857804, 0.3508500772797527, 0.5162287480680062], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/REV1_C.gap.json b/pfam_gap_rates/REV1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc10747cd8c2b7491e073d050df9967341a10056
--- /dev/null
+++ b/pfam_gap_rates/REV1_C.gap.json
@@ -0,0 +1 @@
+{"family": "REV1_C", "n_seqs": 124, "length": 151, "gap_rates": [0.9193548387096774, 0.9032258064516129, 0.8790322580645161, 0.8548387096774194, 0.8306451612903226, 0.8306451612903226, 0.7983870967741935, 0.7741935483870968, 0.7580645161290323, 0.75, 0.7258064516129032, 0.7338709677419355, 0.7096774193548387, 0.6693548387096774, 0.6532258064516129, 0.6451612903225806, 0.6370967741935484, 0.6370967741935484, 0.6290322580645161, 0.6370967741935484, 0.6209677419354839, 0.5887096774193549, 0.5887096774193549, 0.5483870967741935, 0.5483870967741935, 0.5403225806451613, 0.47580645161290325, 0.4435483870967742, 0.4274193548387097, 0.22580645161290322, 0.6290322580645161, 0.7580645161290323, 0.8951612903225806, 0.8790322580645161, 0.7096774193548387, 0.6048387096774194, 0.0967741935483871, 0.056451612903225805, 0.03225806451612903, 0.016129032258064516, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.0, 0.0, 0.0, 0.0, 0.49193548387096775, 0.4112903225806452, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4435483870967742, 0.04838709677419355, 0.0, 0.024193548387096774, 0.008064516129032258, 0.9274193548387096, 0.9112903225806451, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.04032258064516129, 0.04032258064516129, 0.5241935483870968, 0.4032258064516129, 0.4435483870967742, 0.6290322580645161, 0.75, 0.8064516129032258, 0.8548387096774194, 0.8790322580645161, 0.8951612903225806, 0.8951612903225806, 0.9032258064516129, 0.8951612903225806, 0.8951612903225806, 0.8629032258064516, 0.8467741935483871, 0.7741935483870968, 0.7096774193548387, 0.532258064516129, 0.43548387096774194, 0.06451612903225806, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.04032258064516129, 0.04838709677419355, 0.056451612903225805, 0.056451612903225805, 0.08064516129032258, 0.08870967741935484, 0.12096774193548387, 0.18548387096774194, 0.3951612903225806, 0.4112903225806452, 0.4112903225806452, 0.45161290322580644, 0.46774193548387094, 0.47580645161290325, 0.5403225806451613, 0.6532258064516129], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RHD3.gap.json b/pfam_gap_rates/RHD3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d86a4246a39b3c82326bd0996b15895f557640c4
--- /dev/null
+++ b/pfam_gap_rates/RHD3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RHH_1.gap.json b/pfam_gap_rates/RHH_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4cadb3e0f3b6456033c1e0dc6472f8e316a8fdce
--- /dev/null
+++ b/pfam_gap_rates/RHH_1.gap.json
@@ -0,0 +1 @@
+{"family": "RHH_1", "n_seqs": 1676, "length": 40, "gap_rates": [0.6437947494033412, 0.24463007159904535, 0.15871121718377088, 0.06980906921241051, 0.042362768496420046, 0.025059665871121718, 0.015513126491646777, 0.012529832935560859, 0.008353221957040573, 0.0053699284009546535, 0.0029832935560859188, 0.0017899761336515514, 0.0005966587112171838, 0.0, 0.0, 0.0005966587112171838, 0.0005966587112171838, 0.0017899761336515514, 0.003579952267303103, 0.0017899761336515514, 0.002386634844868735, 0.0011933174224343676, 0.7070405727923628, 0.0005966587112171838, 0.0005966587112171838, 0.0, 0.0011933174224343676, 0.0017899761336515514, 0.003579952267303103, 0.003579952267303103, 0.01909307875894988, 0.026252983293556086, 0.03699284009546539, 0.05608591885441527, 0.07159904534606205, 0.11455847255369929, 0.19689737470167065, 0.27505966587112174, 0.5757756563245824, 0.8126491646778043], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RHH_5.gap.json b/pfam_gap_rates/RHH_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed9790a93bced6c86260596bb20f8d71b479ce45
--- /dev/null
+++ b/pfam_gap_rates/RHH_5.gap.json
@@ -0,0 +1 @@
+{"family": "RHH_5", "n_seqs": 124, "length": 43, "gap_rates": [0.7661290322580645, 0.47580645161290325, 0.3790322580645161, 0.3064516129032258, 0.27419354838709675, 0.25806451612903225, 0.25806451612903225, 0.1774193548387097, 0.12903225806451613, 0.10483870967741936, 0.03225806451612903, 0.024193548387096774, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03225806451612903, 0.056451612903225805, 0.06451612903225806, 0.06451612903225806, 0.07258064516129033, 0.08064516129032258, 0.12096774193548387, 0.12903225806451613, 0.1774193548387097, 0.25, 0.3951612903225806, 0.6129032258064516], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RIC1.gap.json b/pfam_gap_rates/RIC1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2d9745104784caf017e5709c22f01df6d3997a2
--- /dev/null
+++ b/pfam_gap_rates/RIC1.gap.json
@@ -0,0 +1 @@
+{"family": "RIC1", "n_seqs": 295, "length": 328, "gap_rates": [0.535593220338983, 0.4135593220338983, 0.28135593220338984, 0.2542372881355932, 0.2305084745762712, 0.22372881355932203, 0.22033898305084745, 0.22033898305084745, 0.22033898305084745, 0.22033898305084745, 0.22033898305084745, 0.22033898305084745, 0.6440677966101694, 0.21694915254237288, 0.21694915254237288, 0.21694915254237288, 0.21694915254237288, 0.22033898305084745, 0.21694915254237288, 0.21694915254237288, 0.21694915254237288, 0.21694915254237288, 0.2271186440677966, 0.2305084745762712, 0.2305084745762712, 0.23389830508474577, 0.7796610169491526, 0.9152542372881356, 0.6677966101694915, 0.25084745762711863, 0.288135593220339, 0.5152542372881356, 0.6271186440677966, 0.7932203389830509, 0.864406779661017, 0.9016949152542373, 0.9288135593220339, 0.9423728813559322, 0.9491525423728814, 0.9491525423728814, 0.9457627118644067, 0.9389830508474576, 0.9186440677966101, 0.8779661016949153, 0.8372881355932204, 0.7491525423728813, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RICTOR_V.gap.json b/pfam_gap_rates/RICTOR_V.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ea4897138e009603f065463e930bf8a7e00d831
--- /dev/null
+++ b/pfam_gap_rates/RICTOR_V.gap.json
@@ -0,0 +1 @@
+{"family": "RICTOR_V", "n_seqs": 235, "length": 74, "gap_rates": [0.7659574468085106, 0.07659574468085106, 0.03404255319148936, 0.02553191489361702, 0.01702127659574468, 0.01276595744680851, 0.01276595744680851, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.01702127659574468, 0.00425531914893617, 0.00425531914893617, 0.00851063829787234, 0.00851063829787234, 0.00425531914893617, 0.00851063829787234, 0.0, 0.0, 0.10212765957446808, 0.9063829787234042, 0.9404255319148936, 0.8978723404255319, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00425531914893617, 0.0, 0.00851063829787234, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00425531914893617, 0.00851063829787234, 0.00851063829787234, 0.01276595744680851, 0.01702127659574468, 0.02127659574468085, 0.02127659574468085, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03829787234042553, 0.2765957446808511], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_3_Rpc31.gap.json b/pfam_gap_rates/RNA_pol_3_Rpc31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d69a84f016d4c3f601afd9cfa5d89aab78a5623
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_3_Rpc31.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_3_Rpc31", "n_seqs": 280, "length": 310, "gap_rates": [0.5392857142857143, 0.4857142857142857, 0.40714285714285714, 0.3964285714285714, 0.5285714285714286, 0.525, 0.5142857142857142, 0.48214285714285715, 0.43214285714285716, 0.8357142857142857, 0.8928571428571429, 0.9321428571428572, 0.95, 0.925, 0.8607142857142858, 0.7142857142857143, 0.44285714285714284, 0.39285714285714285, 0.35714285714285715, 0.30714285714285716, 0.29642857142857143, 0.30357142857142855, 0.2892857142857143, 0.29285714285714287, 0.2857142857142857, 0.275, 0.275, 0.275, 0.4857142857142857, 0.5142857142857142, 0.8964285714285715, 0.7964285714285714, 0.4107142857142857, 0.4357142857142857, 0.46785714285714286, 0.30714285714285716, 0.2642857142857143, 0.25, 0.35, 0.31785714285714284, 0.2857142857142857, 0.45357142857142857, 0.21428571428571427, 0.20714285714285716, 0.19642857142857142, 0.18571428571428572, 0.175, 0.17142857142857143, 0.17142857142857143, 0.16428571428571428, 0.5535714285714286, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb1_7.gap.json b/pfam_gap_rates/RNA_pol_Rpb1_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6fe7cb4a3677640eb0fdcd8dd663ca930ce991b0
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb1_7.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb1_7", "n_seqs": 372, "length": 148, "gap_rates": [0.07795698924731183, 0.03763440860215054, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.024193548387096774, 0.024193548387096774, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.024193548387096774, 0.024193548387096774, 0.026881720430107527, 0.026881720430107527, 0.03763440860215054, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.03225806451612903, 0.03225806451612903, 0.02956989247311828, 0.02956989247311828, 0.3333333333333333, 0.8306451612903226, 0.31451612903225806, 0.8440860215053764, 0.6774193548387096, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.02956989247311828, 0.026881720430107527, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.043010752688172046, 0.02956989247311828, 0.02956989247311828, 0.026881720430107527, 0.026881720430107527, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.03225806451612903, 0.03763440860215054, 0.03494623655913978, 0.03225806451612903, 0.03763440860215054, 0.03494623655913978, 0.9327956989247311, 0.03763440860215054, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.02956989247311828, 0.03225806451612903, 0.02956989247311828, 0.03225806451612903, 0.03225806451612903, 0.03494623655913978, 0.05913978494623656, 0.03494623655913978, 0.03494623655913978, 0.03494623655913978, 0.03763440860215054, 0.03763440860215054, 0.03763440860215054, 0.04032258064516129, 0.04032258064516129, 0.043010752688172046, 0.043010752688172046, 0.9032258064516129, 0.9274193548387096, 0.9220430107526881, 0.8897849462365591, 0.06451612903225806, 0.23655913978494625, 0.22580645161290322, 0.20967741935483872, 0.717741935483871, 0.8844086021505376, 0.9408602150537635, 0.7795698924731183, 0.7016129032258065, 0.23387096774193547, 0.17204301075268819, 0.13440860215053763, 0.15591397849462366, 0.15053763440860216, 0.13172043010752688, 0.1586021505376344, 0.1478494623655914, 0.11290322580645161, 0.11021505376344086, 0.11021505376344086, 0.10483870967741936, 0.10752688172043011, 0.10752688172043011, 0.11021505376344086, 0.11021505376344086, 0.11021505376344086, 0.11559139784946236, 0.12365591397849462, 0.12365591397849462, 0.12096774193548387, 0.12365591397849462, 0.12634408602150538, 0.12903225806451613, 0.13172043010752688, 0.13440860215053763, 0.1424731182795699, 0.1532258064516129, 0.20698924731182797], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb2_2.gap.json b/pfam_gap_rates/RNA_pol_Rpb2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49833d742b42d8493447c2918a07253540510a96
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb2_2.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb2_2", "n_seqs": 4627, "length": 213, "gap_rates": [0.6161659822779338, 0.4843311000648368, 0.4640155608385563, 0.45882861465312297, 0.45537065052950076, 0.4527771774367841, 0.4506159498595202, 0.44737410849362436, 0.447157985735898, 0.4441322671277286, 0.4406743030041063, 0.4380808299113897, 0.43440674303004106, 0.43138102442187165, 0.4367840933650313, 0.42338448238599524, 0.7776096822995462, 0.881564728765939, 0.8886967797709099, 0.8910741301059002, 0.8979900583531446, 0.9435919602334126, 0.8915063756213529, 0.8899935163172682, 0.8863194294359196, 0.8774583963691377, 0.7685325264750378, 0.6433974497514588, 0.4140912038037605, 0.38707585908796194, 0.37756645774800085, 0.3725956343202939, 0.36049275988761614, 0.35725091852172036, 0.3557380592176356, 0.35336070888264537, 0.3542251999135509, 0.35314458612491895, 0.35011886751674953, 0.34925437648584395, 0.363734601253512, 0.35746704127944673, 0.35444132267127726, 0.3460125351199481, 0.34449967581586344, 0.3425545709963259, 0.34169007996542033, 0.33974497514588287, 0.3386643613572509, 0.3354225199913551, 0.33412578344499677, 0.333693537929544, 0.3468770261508537, 0.3315323103522801, 0.33088394207910093, 0.33650313377998703, 0.37237951156256754, 0.3302355738059218, 0.3280743462286579, 0.32742597795547873, 0.33455802896044956, 0.3228874000432245, 0.3228874000432245, 0.3224551545277718, 0.32223903177004537, 0.32223903177004537, 0.322022909012319, 0.32180678625459264, 0.32180678625459264, 0.3215906634968662, 0.32094229522368706, 0.3202939269505079, 0.32094229522368706, 0.3393127296304301, 0.45364166846768966, 0.3280743462286579, 0.38145666738707584, 0.3330451696563648, 0.3241841365895829, 0.3267776096822995, 0.32612924140912036, 0.33066781932137457, 0.4650961746271882, 0.4350551113032202, 0.4486708450399827, 0.6075210719688783, 0.9301923492543764, 0.9325696995893668, 0.9228441754916793, 0.7279014480224768, 0.6883509833585476, 0.6375621352928463, 0.6163821050356603, 0.6096822995461422, 0.5921763561703047, 0.5787767451912686, 0.4979468338015993, 0.44175491679273826, 0.43267776096822996, 0.4264102009941647, 0.41949427274692025, 0.4127944672574022, 0.3926950507888481, 0.3840501404797925, 0.3788631942943592, 0.3700021612275773, 0.366544197103955, 0.35660255024854115, 0.33779987032634534, 0.3237518910741301, 0.31186513939917876, 0.303652474605576, 0.30257186081694404, 0.29997838772422736, 0.29868165117786905, 0.29695266911605794, 0.2971687918737843, 0.2967365463583315, 0.29695266911605794, 0.2967365463583315, 0.2976010373892371, 0.3014912470283121, 0.9422952236870542, 0.8770261508536848, 0.7858223470931489, 0.7823643829695267, 0.32180678625459264, 0.3185649448886968, 0.3125135076723579, 0.3019234925437649, 0.299762264966501, 0.29868165117786905, 0.2971687918737843, 0.29652042360060515, 0.2950075642965204, 0.29479144153879405, 0.29479144153879405, 0.2950075642965204, 0.29479144153879405, 0.2941430732656149, 0.310352280095094, 0.307542684244651, 0.3347741517181759, 0.47222822563215905, 0.5284201426410201, 0.5312297384914632, 0.5601901880267992, 0.5329587205532743, 0.5301491247028312, 0.5238815647287659, 0.504430516533391, 0.4890858007348174, 0.4787119083639507, 0.4702831208126216, 0.4640155608385563, 0.42705856926734387, 0.4192781499891939, 0.40198832937108275, 0.32569699589366763, 0.2876593905338232, 0.28290468986384265, 0.2818240760752107, 0.2792306029824941, 0.27944672574022045, 0.4449967581586341, 0.2865787767451913, 0.28160795331748434, 0.27361141128160793, 0.2723146747352496, 0.27425977955478714, 0.28204019883293713, 0.29284633671925653, 0.5688350983358548, 0.40609466176788417, 0.40198832937108275, 0.3581154095526259, 0.4903825372811757, 0.694618543332613, 0.4676896477199049, 0.30127512427058567, 0.3019234925437649, 0.30084287875513294, 0.30213961530149125, 0.30516533390966066, 0.3101361573373676, 0.3127296304300843, 0.31294575318781065, 0.3140263669764426, 0.3146747352496218, 0.31510698076507454, 0.31510698076507454, 0.31553922628052733, 0.31553922628052733, 0.31553922628052733, 0.31575534903825375, 0.3233196455586773, 0.3194294359196023, 0.3207261724659607, 0.322022909012319, 0.3224551545277718, 0.32440025934730926, 0.3250486276204884, 0.325913118651394, 0.32656148692457315, 0.3272098551977523, 0.3295872055327426, 0.33218067862545925, 0.3332612924140912, 0.33412578344499677, 0.33628701102226066, 0.3369353792954398, 0.34449967581586344, 0.40112383834017723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb8.gap.json b/pfam_gap_rates/RNA_pol_Rpb8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f444635a0d8f4388b00b3b2e17704d4b03eace70
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb8.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb8", "n_seqs": 367, "length": 157, "gap_rates": [0.21798365122615804, 0.16348773841961853, 0.12806539509536785, 0.11444141689373297, 0.11171662125340599, 0.11171662125340599, 0.10899182561307902, 0.10899182561307902, 0.10899182561307902, 0.10899182561307902, 0.11171662125340599, 0.4114441416893733, 0.39509536784741145, 0.11171662125340599, 0.1008174386920981, 0.1008174386920981, 0.09809264305177112, 0.09809264305177112, 0.08174386920980926, 0.07901907356948229, 0.07901907356948229, 0.07901907356948229, 0.07901907356948229, 0.07629427792915532, 0.07356948228882834, 0.07356948228882834, 0.07356948228882834, 0.10899182561307902, 0.09809264305177112, 0.9182561307901907, 0.0681198910081744, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04904632152588556, 0.04904632152588556, 0.04904632152588556, 0.04904632152588556, 0.04904632152588556, 0.051771117166212535, 0.051771117166212535, 0.04904632152588556, 0.051771117166212535, 0.06267029972752043, 0.051771117166212535, 0.04904632152588556, 0.04904632152588556, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04904632152588556, 0.04904632152588556, 0.051771117166212535, 0.04904632152588556, 0.9209809264305178, 0.9318801089918256, 0.9400544959128065, 0.9346049046321526, 0.9264305177111717, 0.9209809264305178, 0.09809264305177112, 0.11989100817438691, 0.11989100817438691, 0.11171662125340599, 0.1307901907356948, 0.12806539509536785, 0.17983651226158037, 0.1880108991825613, 0.1553133514986376, 0.14986376021798364, 0.17166212534059946, 0.5449591280653951, 0.8010899182561307, 0.3542234332425068, 0.6430517711171662, 0.7329700272479565, 0.8746594005449592, 0.9373297002724795, 0.8474114441416893, 0.667574931880109, 0.6239782016348774, 0.08446866485013624, 0.08446866485013624, 0.07629427792915532, 0.07084468664850137, 0.0653950953678474, 0.0653950953678474, 0.05994550408719346, 0.05449591280653951, 0.05449591280653951, 0.051771117166212535, 0.051771117166212535, 0.051771117166212535, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04632152588555858, 0.04904632152588556, 0.04904632152588556, 0.04904632152588556, 0.04904632152588556, 0.04632152588555858, 0.04632152588555858, 0.04904632152588556, 0.051771117166212535, 0.07629427792915532, 0.5667574931880109, 0.7302452316076294, 0.8555858310626703, 0.659400544959128, 0.3978201634877384, 0.13896457765667575, 0.10899182561307902, 0.10626702997275204, 0.10899182561307902, 0.10626702997275204, 0.10626702997275204, 0.11444141689373297, 0.11444141689373297, 0.11444141689373297, 0.11444141689373297, 0.11716621253405994, 0.11716621253405994, 0.11716621253405994, 0.11716621253405994, 0.11716621253405994, 0.11716621253405994, 0.11716621253405994, 0.11716621253405994, 0.11989100817438691, 0.11989100817438691, 0.1226158038147139, 0.1307901907356948, 0.1307901907356948, 0.1307901907356948, 0.1362397820163488, 0.1362397820163488, 0.1362397820163488, 0.14168937329700274, 0.14168937329700274, 0.3542234332425068, 0.14168937329700274, 0.14168937329700274, 0.1444141689373297, 0.1444141689373297, 0.14713896457765668, 0.14713896457765668, 0.14986376021798364, 0.26430517711171664], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_HII.gap.json b/pfam_gap_rates/RNase_HII.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7440dfbcbf27b8ac0c7e77957f14e50d445bccb3
--- /dev/null
+++ b/pfam_gap_rates/RNase_HII.gap.json
@@ -0,0 +1 @@
+{"family": "RNase_HII", "n_seqs": 2823, "length": 227, "gap_rates": [0.10945802337938364, 0.07970244420828905, 0.06482465462274177, 0.06305348919589089, 0.06234502302515055, 0.06234502302515055, 0.061636556854410204, 0.061636556854410204, 0.061282323769040026, 0.061636556854410204, 0.061636556854410204, 0.06057385759829968, 0.06021962451292951, 0.05951115834218916, 0.05596882748848742, 0.05596882748848742, 0.05561459440311725, 0.05526036131774708, 0.0549061282323769, 0.05526036131774708, 0.0549061282323769, 0.05526036131774708, 0.05526036131774708, 0.05596882748848742, 0.0563230605738576, 0.06057385759829968, 0.06376195536663125, 0.5384342897626638, 0.9401346085724407, 0.6539142755933404, 0.6262840949344669, 0.5667729365922777, 0.19411973078285513, 0.08749557208643287, 0.05986539142755933, 0.053134962805526036, 0.05171803046404534, 0.05171803046404534, 0.052072263549415514, 0.05136379737867517, 0.05100956429330499, 0.05065533120793482, 0.05100956429330499, 0.05065533120793482, 0.05100956429330499, 0.05136379737867517, 0.052072263549415514, 0.052072263549415514, 0.05242649663478569, 0.05171803046404534, 0.05171803046404534, 0.05171803046404534, 0.05171803046404534, 0.05171803046404534, 0.052072263549415514, 0.8473255402054551, 0.8717676230959972, 0.8838115479985831, 0.8916046758767269, 0.9181721572794899, 0.9475735033652143, 0.8944385405596883, 0.8887708111937656, 0.8799149840595112, 0.8604321643641516, 0.8405951115834219, 0.7484945093871768, 0.7368048175699611, 0.7290116896918172, 0.6865037194473964, 0.6238044633368757, 0.09883103081827843, 0.05880269217144881, 0.05951115834218916, 0.06517888770811193, 0.07013815090329437, 0.07793127878143818, 0.12362734679419057, 0.07863974495217853, 0.07863974495217853, 0.17215727948990436, 0.9362380446333688, 0.9096705632306057, 0.13885936946510805, 0.1300035423308537, 0.0736804817569961, 0.05915692525681899, 0.05100956429330499, 0.05030109812256465, 0.04994686503719448, 0.0495926319518243, 0.04852993269571378, 0.048884165781083955, 0.049238398866454126, 0.048175699610343604, 0.04782146652497343, 0.04640453418349274, 0.04605030109812257, 0.04640453418349274, 0.04569606801275239, 0.04605030109812257, 0.044633368756641874, 0.04569606801275239, 0.044633368756641874, 0.9475735033652143, 0.04569606801275239, 0.04675876726886291, 0.04852993269571378, 0.05348919589089621, 0.057739992915338295, 0.9475735033652143, 0.9181721572794899, 0.061282323769040026, 0.057739992915338295, 0.05348919589089621, 0.052780729720155864, 0.053134962805526036, 0.9461565710237336, 0.9337584130357776, 0.04746723343960326, 0.04534183492738222, 0.04534183492738222, 0.04569606801275239, 0.04534183492738222, 0.10131066241586964, 0.10095642933049948, 0.085724406659582, 0.08607863974495218, 0.9472192702798441, 0.9213602550478215, 0.077577045696068, 0.085724406659582, 0.4300389656393907, 0.12787814381863266, 0.07190931633014523, 0.061282323769040026, 0.057385759829968117, 0.0563230605738576, 0.05915692525681899, 0.05561459440311725, 0.9337584130357776, 0.05667729365922777, 0.05986539142755933, 0.06624158696422246, 0.9217144881331917, 0.7892313142047467, 0.7151965993623804, 0.7084661707403471, 0.6921714488133192, 0.6872121856181367, 0.6826071555083245, 0.6730428622033298, 0.6528515763372299, 0.6259298618490967, 0.03896563939071909, 0.039319872476089264, 0.041091037902940136, 0.04215373715905066, 0.04675876726886291, 0.04250797024442083, 0.03825717321997875, 0.03790294013460857, 0.03790294013460857, 0.03790294013460857, 0.03790294013460857, 0.03825717321997875, 0.03790294013460857, 0.03861140630534892, 0.03825717321997875, 0.03790294013460857, 0.0375487070492384, 0.03790294013460857, 0.040028338646829614, 0.03967410556145944, 0.3896563939071909, 0.039319872476089264, 0.040028338646829614, 0.040382571732199786, 0.041091037902940136, 0.043924902585901524, 0.04711300035423308, 0.04994686503719448, 0.05100956429330499, 0.05455189514700673, 0.06021962451292951, 0.06517888770811193, 0.9273822174991144, 0.10414452709883103, 0.08501594048884166, 0.07863974495217853, 0.05455189514700673, 0.053843428976266386, 0.05419766206163656, 0.0549061282323769, 0.05880269217144881, 0.057385759829968117, 0.057385759829968117, 0.057739992915338295, 0.057739992915338295, 0.05844845908607864, 0.05951115834218916, 0.05951115834218916, 0.060928090683669854, 0.05986539142755933, 0.06057385759829968, 0.060928090683669854, 0.061636556854410204, 0.06234502302515055, 0.06269925611052073, 0.06376195536663125, 0.06447042153737159, 0.06588735387885228, 0.8788522848034006, 0.8724760892667375, 0.793836344314559, 0.7906482465462275, 0.7874601487778958, 0.77541622387531, 0.07863974495217853, 0.07120085015940489, 0.07155508324477507, 0.07616011335458732, 0.0789939780375487, 0.0832447750619908, 0.16578108395324123, 0.5327665603967411, 0.8653914275593341], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_Zc3h12a.gap.json b/pfam_gap_rates/RNase_Zc3h12a.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6054dad7a6e150c3e7cd11a38ee2c580928ebfc5
--- /dev/null
+++ b/pfam_gap_rates/RNase_Zc3h12a.gap.json
@@ -0,0 +1 @@
+{"family": "RNase_Zc3h12a", "n_seqs": 371, "length": 185, "gap_rates": [0.42048517520215634, 0.33962264150943394, 0.18328840970350405, 0.16981132075471697, 0.16442048517520216, 0.16442048517520216, 0.16442048517520216, 0.16442048517520216, 0.16442048517520216, 0.16442048517520216, 0.16442048517520216, 0.16172506738544473, 0.2560646900269542, 0.21293800539083557, 0.14016172506738545, 0.12398921832884097, 0.8355795148247979, 0.8787061994609164, 0.9299191374663073, 0.9433962264150944, 0.9164420485175202, 0.8598382749326146, 0.8032345013477089, 0.18598382749326145, 0.12129380053908356, 0.11859838274932614, 0.1078167115902965, 0.1078167115902965, 0.10242587601078167, 0.09973045822102426, 0.09433962264150944, 0.0889487870619946, 0.0889487870619946, 0.09164420485175202, 0.0862533692722372, 0.0862533692722372, 0.0862533692722372, 0.0862533692722372, 0.09433962264150944, 0.0889487870619946, 0.0889487870619946, 0.0862533692722372, 0.0862533692722372, 0.08086253369272237, 0.08086253369272237, 0.15363881401617252, 0.09433962264150944, 0.09703504043126684, 0.09703504043126684, 0.09973045822102426, 0.10242587601078167, 0.09973045822102426, 0.0862533692722372, 0.08355795148247978, 0.07816711590296496, 0.8787061994609164, 0.9002695417789758, 0.9056603773584906, 0.9164420485175202, 0.9272237196765498, 0.9326145552560647, 0.9460916442048517, 0.9407008086253369, 0.9299191374663073, 0.9245283018867925, 0.9110512129380054, 0.9056603773584906, 0.889487870619946, 0.8733153638814016, 0.1967654986522911, 0.24528301886792453, 0.24797843665768193, 0.2641509433962264, 0.5902964959568733, 0.4582210242587601, 0.41509433962264153, 0.2398921832884097, 0.11320754716981132, 0.09433962264150944, 0.08355795148247978, 0.08086253369272237, 0.07277628032345014, 0.0673854447439353, 0.06199460916442048, 0.06199460916442048, 0.06199460916442048, 0.0673854447439353, 0.07008086253369272, 0.0673854447439353, 0.07008086253369272, 0.0646900269541779, 0.0646900269541779, 0.07277628032345014, 0.0673854447439353, 0.07547169811320754, 0.0646900269541779, 0.05929919137466307, 0.0646900269541779, 0.06199460916442048, 0.05929919137466307, 0.0673854447439353, 0.0673854447439353, 0.07547169811320754, 0.0889487870619946, 0.30997304582210244, 0.30727762803234504, 0.9353099730458221, 0.9272237196765498, 0.3045822102425876, 0.2695417789757412, 0.29110512129380056, 0.33962264150943394, 0.31536388140161725, 0.2668463611859838, 0.06199460916442048, 0.05929919137466307, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0673854447439353, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0646900269541779, 0.0673854447439353, 0.0673854447439353, 0.0673854447439353, 0.0673854447439353, 0.0673854447439353, 0.0673854447439353, 0.08086253369272237, 0.0889487870619946, 0.9326145552560647, 0.9487870619946092, 0.9407008086253369, 0.8787061994609164, 0.16172506738544473, 0.8867924528301887, 0.16711590296495957, 0.1725067385444744, 0.16711590296495957, 0.16981132075471697, 0.20485175202156333, 0.19946091644204852, 0.18328840970350405, 0.18328840970350405, 0.215633423180593, 0.18598382749326145, 0.18598382749326145, 0.18598382749326145, 0.19137466307277629, 0.19137466307277629, 0.1940700808625337, 0.1967654986522911, 0.20754716981132076, 0.23180592991913745, 0.261455525606469, 0.2695417789757412, 0.2722371967654987, 0.2722371967654987, 0.8814016172506739, 0.3450134770889488, 0.3288409703504043, 0.3450134770889488, 0.3557951482479784, 0.3881401617250674, 0.40431266846361186, 0.40161725067385445, 0.40431266846361186, 0.42048517520215634, 0.4366576819407008, 0.4474393530997305, 0.4474393530997305, 0.4528301886792453, 0.477088948787062, 0.7574123989218329], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RP-C.gap.json b/pfam_gap_rates/RP-C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d20865cfbe0e951e473b9add56c0d5b34463cde8
--- /dev/null
+++ b/pfam_gap_rates/RP-C.gap.json
@@ -0,0 +1 @@
+{"family": "RP-C", "n_seqs": 145, "length": 180, "gap_rates": [0.4, 0.3931034482758621, 0.36551724137931035, 0.3586206896551724, 0.35172413793103446, 0.35172413793103446, 0.33793103448275863, 0.33793103448275863, 0.33793103448275863, 0.32413793103448274, 0.31724137931034485, 0.30344827586206896, 0.30344827586206896, 0.30344827586206896, 0.2896551724137931, 0.27586206896551724, 0.2689655172413793, 0.38620689655172413, 0.32413793103448274, 0.30344827586206896, 0.3310344827586207, 0.6275862068965518, 0.3310344827586207, 0.9241379310344827, 0.7793103448275862, 0.1103448275862069, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.05517241379310345, 0.06206896551724138, 0.05517241379310345, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.04827586206896552, 0.04827586206896552, 0.06206896551724138, 0.06206896551724138, 0.8758620689655172, 0.1310344827586207, 0.09655172413793103, 0.06896551724137931, 0.9379310344827586, 0.9379310344827586, 0.034482758620689655, 0.020689655172413793, 0.020689655172413793, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.41379310344827586, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.013793103448275862, 0.027586206896551724, 0.027586206896551724, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.013793103448275862, 0.013793103448275862, 0.0, 0.0, 0.006896551724137931, 0.034482758620689655, 0.041379310344827586, 0.04827586206896552, 0.19310344827586207, 0.13793103448275862, 0.04827586206896552, 0.06206896551724138, 0.04827586206896552, 0.06206896551724138, 0.12413793103448276, 0.05517241379310345, 0.006896551724137931, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006896551724137931, 0.006896551724137931, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.020689655172413793, 0.020689655172413793, 0.027586206896551724, 0.034482758620689655, 0.04827586206896552, 0.04827586206896552, 0.05517241379310345, 0.06896551724137931, 0.08275862068965517, 0.0896551724137931, 0.10344827586206896, 0.1103448275862069, 0.13793103448275862, 0.15862068965517243, 0.16551724137931034, 0.1793103448275862, 0.18620689655172415, 0.22758620689655173, 0.2896551724137931, 0.3586206896551724, 0.5793103448275863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RPAP1_N.gap.json b/pfam_gap_rates/RPAP1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c83e1337668cefffbd1397a8c574704d1948ab0e
--- /dev/null
+++ b/pfam_gap_rates/RPAP1_N.gap.json
@@ -0,0 +1 @@
+{"family": "RPAP1_N", "n_seqs": 239, "length": 46, "gap_rates": [0.5983263598326359, 0.13807531380753138, 0.08368200836820083, 0.05439330543933055, 0.03347280334728033, 0.02092050209205021, 0.016736401673640166, 0.016736401673640166, 0.008368200836820083, 0.008368200836820083, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0041841004184100415, 0.0, 0.0041841004184100415, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.029288702928870293, 0.03765690376569038, 0.04184100418410042, 0.058577405857740586, 0.10460251046025104, 0.1506276150627615, 0.2301255230125523, 0.35564853556485354, 0.8075313807531381], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RPE65.gap.json b/pfam_gap_rates/RPE65.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b6b05d352ca09c7518a8f9c7bb2c283c52ad1a9
--- /dev/null
+++ b/pfam_gap_rates/RPE65.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RRM_5.gap.json b/pfam_gap_rates/RRM_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b725807acd631f103cb141cfc9b7b058bd22e973
--- /dev/null
+++ b/pfam_gap_rates/RRM_5.gap.json
@@ -0,0 +1 @@
+{"family": "RRM_5", "n_seqs": 795, "length": 135, "gap_rates": [0.9433962264150944, 0.9245283018867925, 0.9119496855345912, 0.8930817610062893, 0.889308176100629, 0.879245283018868, 0.8716981132075472, 0.8490566037735849, 0.8389937106918239, 0.8276729559748428, 0.8188679245283019, 0.7823899371069183, 0.7471698113207547, 0.7194968553459119, 0.6540880503144654, 0.8553459119496856, 0.9308176100628931, 0.8477987421383648, 0.6, 0.5182389937106918, 0.47547169811320755, 0.4327044025157233, 0.38238993710691827, 0.3584905660377358, 0.37358490566037733, 0.28679245283018867, 0.24779874213836478, 0.23522012578616353, 0.2138364779874214, 0.20251572327044026, 0.19371069182389938, 0.18867924528301888, 0.1861635220125786, 0.9333333333333333, 0.9333333333333333, 0.18364779874213835, 0.18364779874213835, 0.21132075471698114, 0.9358490566037736, 0.19874213836477989, 0.18364779874213835, 0.1610062893081761, 0.11572327044025157, 0.10943396226415095, 0.10817610062893082, 0.09182389937106918, 0.08176100628930817, 0.0779874213836478, 0.07547169811320754, 0.07044025157232704, 0.06415094339622641, 0.05911949685534591, 0.045283018867924525, 0.04654088050314465, 0.042767295597484274, 0.042767295597484274, 0.04025157232704402, 0.03773584905660377, 0.03270440251572327, 0.031446540880503145, 0.03270440251572327, 0.929559748427673, 0.031446540880503145, 0.033962264150943396, 0.03647798742138365, 0.04025157232704402, 0.03647798742138365, 0.0389937106918239, 0.06666666666666667, 0.08176100628930817, 0.8805031446540881, 0.033962264150943396, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.02389937106918239, 0.025157232704402517, 0.02389937106918239, 0.025157232704402517, 0.025157232704402517, 0.026415094339622643, 0.026415094339622643, 0.027672955974842768, 0.026415094339622643, 0.02389937106918239, 0.025157232704402517, 0.027672955974842768, 0.03018867924528302, 0.027672955974842768, 0.028930817610062894, 0.03522012578616352, 0.04025157232704402, 0.04654088050314465, 0.04779874213836478, 0.13836477987421383, 0.10817610062893082, 0.10943396226415095, 0.7396226415094339, 0.9132075471698113, 0.7245283018867924, 0.11320754716981132, 0.11320754716981132, 0.11572327044025157, 0.1220125786163522, 0.12955974842767295, 0.13081761006289308, 0.13584905660377358, 0.1421383647798742, 0.14465408805031446, 0.17232704402515722, 0.189937106918239, 0.22012578616352202, 0.4968553459119497, 0.5647798742138365, 0.810062893081761, 0.5018867924528302, 0.4981132075471698, 0.5081761006289308, 0.5371069182389937, 0.5484276729559748, 0.5723270440251572, 0.5773584905660377, 0.6025157232704402, 0.6113207547169811, 0.620125786163522, 0.6251572327044025, 0.6276729559748427, 0.6327044025157232, 0.6364779874213836, 0.6389937106918239, 0.6427672955974842, 0.6578616352201258, 0.6792452830188679, 0.7194968553459119], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RWP-RK.gap.json b/pfam_gap_rates/RWP-RK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b4577e41f5299ce90b4a4ea97e28d748e9d4461
--- /dev/null
+++ b/pfam_gap_rates/RWP-RK.gap.json
@@ -0,0 +1 @@
+{"family": "RWP-RK", "n_seqs": 779, "length": 49, "gap_rates": [0.7201540436456996, 0.18356867779204109, 0.1540436456996149, 0.1258023106546855, 0.08985879332477535, 0.07445442875481387, 0.05391527599486521, 0.051347881899871634, 0.04236200256739409, 0.038510911424903725, 0.037227214377406934, 0.03209242618741977, 0.026957637997432605, 0.02053915275994865, 0.01797175866495507, 0.01797175866495507, 0.01540436456996149, 0.014120667522464698, 0.014120667522464698, 0.014120667522464698, 0.014120667522464698, 0.011553273427471117, 0.007702182284980745, 0.005134788189987163, 0.0025673940949935813, 0.0025673940949935813, 0.0025673940949935813, 0.0025673940949935813, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012836970474967907, 0.0012836970474967907, 0.0012836970474967907, 0.0012836970474967907, 0.006418485237483954, 0.012836970474967908, 0.010269576379974325, 0.005134788189987163, 0.008985879332477536, 0.019255455712451863, 0.07958921694480103, 0.15661103979460847, 0.3209242618741977, 0.37997432605905007, 0.46084724005134786, 0.5378690629011553], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rad21_Rec8.gap.json b/pfam_gap_rates/Rad21_Rec8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8c106f53035af7e0f3972a2a8aa18657cfddcc7
--- /dev/null
+++ b/pfam_gap_rates/Rad21_Rec8.gap.json
@@ -0,0 +1 @@
+{"family": "Rad21_Rec8", "n_seqs": 477, "length": 55, "gap_rates": [0.8763102725366876, 0.6981132075471698, 0.5786163522012578, 0.4779874213836478, 0.3312368972746331, 0.27882599580712786, 0.24737945492662475, 0.20545073375262055, 0.18238993710691823, 0.16771488469601678, 0.14675052410901468, 0.8301886792452831, 0.10482180293501048, 0.0859538784067086, 0.05450733752620545, 0.03563941299790356, 0.031446540880503145, 0.018867924528301886, 0.006289308176100629, 0.0020964360587002098, 0.0020964360587002098, 0.0020964360587002098, 0.0020964360587002098, 0.0020964360587002098, 0.0020964360587002098, 0.0020964360587002098, 0.0020964360587002098, 0.0041928721174004195, 0.0041928721174004195, 0.0041928721174004195, 0.0041928721174004195, 0.0041928721174004195, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.008385744234800839, 0.008385744234800839, 0.010482180293501049, 0.012578616352201259, 0.05241090146750524, 0.14465408805031446, 0.18658280922431866, 0.19077568134171907, 0.19077568134171907, 0.1928721174004193, 0.1928721174004193, 0.20125786163522014, 0.2180293501048218, 0.2557651991614256, 0.33542976939203356, 0.40461215932914046, 0.4381551362683438, 0.5031446540880503, 0.7232704402515723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rad4.gap.json b/pfam_gap_rates/Rad4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ea9049f19abe07758dcd6f8f9979200ae71eac1
--- /dev/null
+++ b/pfam_gap_rates/Rad4.gap.json
@@ -0,0 +1 @@
+{"family": "Rad4", "n_seqs": 482, "length": 183, "gap_rates": [0.9377593360995851, 0.9190871369294605, 0.9004149377593361, 0.8879668049792531, 0.8630705394190872, 0.8423236514522822, 0.8402489626556017, 0.8049792531120332, 0.7821576763485477, 0.7697095435684648, 0.7489626556016598, 0.7468879668049793, 0.7219917012448133, 0.6784232365145229, 0.8900414937759336, 0.9149377593360996, 0.9294605809128631, 0.9024896265560166, 0.8858921161825726, 0.6970954356846473, 0.6161825726141079, 0.5746887966804979, 0.5456431535269709, 0.524896265560166, 0.504149377593361, 0.491701244813278, 0.48132780082987553, 0.46887966804979253, 0.4460580912863071, 0.4336099585062241, 0.4149377593360996, 0.3962655601659751, 0.37136929460580914, 0.3630705394190871, 0.34647302904564314, 0.3257261410788382, 0.2946058091286307, 0.22199170124481327, 0.06639004149377593, 0.05394190871369295, 0.05394190871369295, 0.04771784232365145, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.9253112033195021, 0.9377593360995851, 0.9190871369294605, 0.04771784232365145, 0.04564315352697095, 0.04564315352697095, 0.043568464730290454, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.035269709543568464, 0.035269709543568464, 0.035269709543568464, 0.035269709543568464, 0.035269709543568464, 0.035269709543568464, 0.22821576763485477, 0.6058091286307054, 0.4896265560165975, 0.4854771784232365, 0.7842323651452282, 0.8174273858921162, 0.9107883817427386, 0.7946058091286307, 0.7593360995850622, 0.487551867219917, 0.32987551867219916, 0.16182572614107885, 0.06639004149377593, 0.058091286307053944, 0.058091286307053944, 0.06016597510373444, 0.06016597510373444, 0.043568464730290454, 0.5622406639004149, 0.8112033195020747, 0.520746887966805, 0.03734439834024896, 0.022821576763485476, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.024896265560165973, 0.016597510373443983, 0.014522821576763486, 0.014522821576763486, 0.014522821576763486, 0.014522821576763486, 0.014522821576763486, 0.014522821576763486, 0.014522821576763486, 0.36721991701244816, 0.014522821576763486, 0.014522821576763486, 0.016597510373443983, 0.014522821576763486, 0.01037344398340249, 0.01037344398340249, 0.01037344398340249, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.8692946058091287, 0.08506224066390042, 0.6307053941908713, 0.12448132780082988, 0.04149377593360996, 0.043568464730290454, 0.03941908713692946, 0.03941908713692946, 0.03941908713692946, 0.04149377593360996, 0.04771784232365145, 0.04771784232365145, 0.05394190871369295, 0.056016597510373446, 0.7946058091286307, 0.8070539419087137, 0.8340248962655602, 0.8506224066390041, 0.8609958506224067, 0.8755186721991701, 0.8858921161825726, 0.8713692946058091, 0.8547717842323651, 0.8464730290456431, 0.8257261410788381, 0.7966804979253111, 0.7261410788381742, 0.5518672199170125, 0.533195020746888, 0.46887966804979253, 0.45850622406639, 0.4024896265560166, 0.07053941908713693, 0.06431535269709543, 0.06431535269709543, 0.06639004149377593, 0.07053941908713693, 0.07676348547717843, 0.08921161825726141, 0.0954356846473029, 0.0975103734439834, 0.12033195020746888, 0.12448132780082988, 0.12655601659751037, 0.13070539419087138, 0.13278008298755187, 0.13900414937759337, 0.14522821576763487, 0.15767634854771784, 0.17012448132780084, 0.7157676348547718, 0.7842323651452282, 0.8049792531120332, 0.8879668049792531, 0.9004149377593361, 0.8900414937759336, 0.8257261410788381, 0.7987551867219918, 0.7240663900414938, 0.6493775933609959, 0.6058091286307054, 0.36099585062240663, 0.24066390041493776, 0.24066390041493776, 0.24896265560165975, 0.2551867219917012, 0.2821576763485477, 0.31950207468879666, 0.35684647302904565, 0.4045643153526971, 0.8900414937759336], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rad60-SLD_2.gap.json b/pfam_gap_rates/Rad60-SLD_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..314d59f9b2b5ed525fc1703821da1db2f9648605
--- /dev/null
+++ b/pfam_gap_rates/Rad60-SLD_2.gap.json
@@ -0,0 +1 @@
+{"family": "Rad60-SLD_2", "n_seqs": 344, "length": 123, "gap_rates": [0.7122093023255814, 0.4186046511627907, 0.32558139534883723, 0.30523255813953487, 0.29069767441860467, 0.2877906976744186, 0.2877906976744186, 0.2877906976744186, 0.2819767441860465, 0.27906976744186046, 0.27325581395348836, 0.2703488372093023, 0.26453488372093026, 0.6133720930232558, 0.25872093023255816, 0.25872093023255816, 0.25, 0.24709302325581395, 0.24127906976744187, 0.23255813953488372, 0.22674418604651161, 0.19476744186046513, 0.9040697674418605, 0.06395348837209303, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.040697674418604654, 0.040697674418604654, 0.0377906976744186, 0.02616279069767442, 0.02616279069767442, 0.029069767441860465, 0.02616279069767442, 0.6744186046511628, 0.07848837209302326, 0.02616279069767442, 0.03197674418604651, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.020348837209302327, 0.020348837209302327, 0.020348837209302327, 0.020348837209302327, 0.020348837209302327, 0.020348837209302327, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.03197674418604651, 0.040697674418604654, 0.06976744186046512, 0.046511627906976744, 0.05232558139534884, 0.06686046511627906, 0.09302325581395349, 0.06976744186046512, 0.0872093023255814, 0.5319767441860465, 0.5058139534883721, 0.9447674418604651, 0.9447674418604651, 0.9273255813953488, 0.502906976744186, 0.4186046511627907, 0.09883720930232558, 0.09593023255813954, 0.07848837209302326, 0.08139534883720931, 0.08430232558139535, 0.08430232558139535, 0.0872093023255814, 0.09302325581395349, 0.0872093023255814, 0.09011627906976744, 0.09883720930232558, 0.10174418604651163, 0.11046511627906977, 0.11918604651162791, 0.1308139534883721, 0.14534883720930233, 0.19186046511627908, 0.20930232558139536, 0.22965116279069767, 0.9098837209302325, 0.936046511627907, 0.9476744186046512, 0.9418604651162791, 0.9302325581395349, 0.7848837209302325, 0.2936046511627907, 0.3430232558139535, 0.3488372093023256, 0.8808139534883721, 0.38372093023255816, 0.4069767441860465, 0.4273255813953488, 0.44476744186046513, 0.46511627906976744, 0.47674418604651164, 0.48546511627906974, 0.4883720930232558, 0.5465116279069767], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rad9.gap.json b/pfam_gap_rates/Rad9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95085264f768b6b316c79c064f709580914ff5ea
--- /dev/null
+++ b/pfam_gap_rates/Rad9.gap.json
@@ -0,0 +1 @@
+{"family": "Rad9", "n_seqs": 346, "length": 344, "gap_rates": [0.5144508670520231, 0.4421965317919075, 0.4046242774566474, 0.2745664739884393, 0.2658959537572254, 0.2658959537572254, 0.2658959537572254, 0.26011560693641617, 0.26011560693641617, 0.26011560693641617, 0.25722543352601157, 0.25722543352601157, 0.2543352601156069, 0.2543352601156069, 0.2514450867052023, 0.2514450867052023, 0.24855491329479767, 0.24855491329479767, 0.24855491329479767, 0.24566473988439305, 0.24277456647398843, 0.2398843930635838, 0.23410404624277456, 0.23121387283236994, 0.23121387283236994, 0.23121387283236994, 0.23121387283236994, 0.22832369942196531, 0.2254335260115607, 0.22254335260115607, 0.23121387283236994, 0.23121387283236994, 0.22254335260115607, 0.22254335260115607, 0.22254335260115607, 0.21965317919075145, 0.22254335260115607, 0.21676300578034682, 0.21676300578034682, 0.21676300578034682, 0.21676300578034682, 0.2138728323699422, 0.8988439306358381, 0.21098265895953758, 0.21098265895953758, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Rav1p_C.gap.json b/pfam_gap_rates/Rav1p_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eeb7eab7a111d141a884838d466ee6e1de607f32
--- /dev/null
+++ b/pfam_gap_rates/Rav1p_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RcpC.gap.json b/pfam_gap_rates/RcpC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f9a70c0db642e62426792649895b16a8621769b
--- /dev/null
+++ b/pfam_gap_rates/RcpC.gap.json
@@ -0,0 +1 @@
+{"family": "RcpC", "n_seqs": 585, "length": 137, "gap_rates": [0.8564102564102564, 0.5230769230769231, 0.358974358974359, 0.3264957264957265, 0.28717948717948716, 0.17264957264957265, 0.08205128205128205, 0.06153846153846154, 0.041025641025641026, 0.03418803418803419, 0.03247863247863248, 0.02564102564102564, 0.023931623931623933, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.013675213675213675, 0.011965811965811967, 0.013675213675213675, 0.9316239316239316, 0.03247863247863248, 0.010256410256410256, 0.011965811965811967, 0.008547008547008548, 0.006837606837606838, 0.008547008547008548, 0.003418803418803419, 0.005128205128205128, 0.003418803418803419, 0.0017094017094017094, 0.0017094017094017094, 0.0017094017094017094, 0.0017094017094017094, 0.0017094017094017094, 0.0017094017094017094, 0.0017094017094017094, 0.0017094017094017094, 0.0017094017094017094, 0.0017094017094017094, 0.0017094017094017094, 0.7435897435897436, 0.8307692307692308, 0.8786324786324786, 0.8991452991452992, 0.947008547008547, 0.935042735042735, 0.8871794871794871, 0.8581196581196581, 0.8, 0.6598290598290598, 0.582905982905983, 0.49914529914529915, 0.39316239316239315, 0.30427350427350425, 0.15555555555555556, 0.07179487179487179, 0.06495726495726496, 0.04786324786324787, 0.037606837606837605, 0.017094017094017096, 0.011965811965811967, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.7811965811965812, 0.8188034188034188, 0.8786324786324786, 0.9213675213675213, 0.9435897435897436, 0.8991452991452992, 0.8512820512820513, 0.8017094017094017, 0.7487179487179487, 0.7025641025641025, 0.6957264957264957, 0.6017094017094017, 0.49230769230769234, 0.30427350427350425, 0.12307692307692308, 0.08547008547008547, 0.07521367521367521, 0.06153846153846154, 0.04786324786324787, 0.042735042735042736, 0.035897435897435895, 0.03076923076923077, 0.037606837606837605, 0.042735042735042736, 0.03418803418803419, 0.05299145299145299, 0.0735042735042735, 0.09914529914529914, 0.48034188034188036, 0.42905982905982903, 0.38974358974358975, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.018803418803418803, 0.020512820512820513, 0.023931623931623933, 0.02564102564102564, 0.02735042735042735, 0.02735042735042735, 0.02735042735042735, 0.02735042735042735, 0.02905982905982906, 0.03247863247863248, 0.035897435897435895, 0.035897435897435895, 0.044444444444444446, 0.05641025641025641, 0.9179487179487179, 0.05811965811965812, 0.06837606837606838, 0.08717948717948718, 0.09743589743589744, 0.11965811965811966, 0.1641025641025641, 0.4444444444444444], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RecR.gap.json b/pfam_gap_rates/RecR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e31d51bfa56642c71680d3cf83e20cebfcf2c48e
--- /dev/null
+++ b/pfam_gap_rates/RecR.gap.json
@@ -0,0 +1 @@
+{"family": "RecR", "n_seqs": 1980, "length": 40, "gap_rates": [0.6565656565656566, 0.2606060606060606, 0.11313131313131314, 0.026767676767676767, 0.012121212121212121, 0.00808080808080808, 0.004545454545454545, 0.00404040404040404, 0.0025252525252525255, 0.0030303030303030303, 0.00202020202020202, 0.0025252525252525255, 0.0035353535353535356, 0.010101010101010102, 0.000505050505050505, 0.000505050505050505, 0.000505050505050505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.000505050505050505, 0.000505050505050505, 0.0, 0.00101010101010101, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035353535353535356, 0.005555555555555556, 0.007575757575757576, 0.010101010101010102, 0.1873737373737374], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rep_fac-A_3.gap.json b/pfam_gap_rates/Rep_fac-A_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4067042fb3e0135251b5df05745caa6e831f171
--- /dev/null
+++ b/pfam_gap_rates/Rep_fac-A_3.gap.json
@@ -0,0 +1 @@
+{"family": "Rep_fac-A_3", "n_seqs": 301, "length": 122, "gap_rates": [0.5249169435215947, 0.4717607973421927, 0.42524916943521596, 0.2724252491694352, 0.7674418604651163, 0.6611295681063123, 0.15946843853820597, 0.10299003322259136, 0.06312292358803986, 0.06312292358803986, 0.06312292358803986, 0.059800664451827246, 0.059800664451827246, 0.053156146179401995, 0.04983388704318937, 0.046511627906976744, 0.04983388704318937, 0.046511627906976744, 0.036544850498338874, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.029900332225913623, 0.029900332225913623, 0.029900332225913623, 0.026578073089700997, 0.023255813953488372, 0.023255813953488372, 0.7408637873754153, 0.6644518272425249, 0.053156146179401995, 0.026578073089700997, 0.019933554817275746, 0.019933554817275746, 0.016611295681063124, 0.016611295681063124, 0.013289036544850499, 0.013289036544850499, 0.013289036544850499, 0.016611295681063124, 0.23255813953488372, 0.2059800664451827, 0.009966777408637873, 0.013289036544850499, 0.946843853820598, 0.9401993355481728, 0.013289036544850499, 0.016611295681063124, 0.019933554817275746, 0.019933554817275746, 0.016611295681063124, 0.019933554817275746, 0.016611295681063124, 0.09966777408637874, 0.18604651162790697, 0.09634551495016612, 0.03322259136212625, 0.029900332225913623, 0.15946843853820597, 0.9269102990033222, 0.03322259136212625, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.016611295681063124, 0.026578073089700997, 0.019933554817275746, 0.029900332225913623, 0.023255813953488372, 0.9335548172757475, 0.8704318936877077, 0.03986710963455149, 0.03986710963455149, 0.029900332225913623, 0.026578073089700997, 0.9036544850498339, 0.026578073089700997, 0.029900332225913623, 0.03322259136212625, 0.03322259136212625, 0.036544850498338874, 0.036544850498338874, 0.03322259136212625, 0.03322259136212625, 0.893687707641196, 0.920265780730897, 0.9036544850498339, 0.8604651162790697, 0.036544850498338874, 0.036544850498338874, 0.813953488372093, 0.9435215946843853, 0.8770764119601329, 0.8039867109634552, 0.03986710963455149, 0.05647840531561462, 0.08637873754152824, 0.08637873754152824, 0.08637873754152824, 0.08970099667774087, 0.08970099667774087, 0.08970099667774087, 0.08970099667774087, 0.08970099667774087, 0.09302325581395349, 0.10631229235880399, 0.11295681063122924, 0.132890365448505, 0.18272425249169436, 0.21926910299003322, 0.4318936877076412, 0.45182724252491696, 0.4950166112956811, 0.4983388704318937, 0.5348837209302325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Reprolysin_3.gap.json b/pfam_gap_rates/Reprolysin_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bc47973b66659e003a0db891d8d7934e1e137d1
--- /dev/null
+++ b/pfam_gap_rates/Reprolysin_3.gap.json
@@ -0,0 +1 @@
+{"family": "Reprolysin_3", "n_seqs": 131, "length": 179, "gap_rates": [0.5725190839694656, 0.46564885496183206, 0.42748091603053434, 0.4122137404580153, 0.40458015267175573, 0.3816793893129771, 0.3511450381679389, 0.3435114503816794, 0.3282442748091603, 0.3053435114503817, 0.3053435114503817, 0.3053435114503817, 0.3053435114503817, 0.3053435114503817, 0.3053435114503817, 0.7557251908396947, 0.5114503816793893, 0.29770992366412213, 0.2900763358778626, 0.2595419847328244, 0.7175572519083969, 0.816793893129771, 0.7022900763358778, 0.2595419847328244, 0.2595419847328244, 0.26717557251908397, 0.26717557251908397, 0.25190839694656486, 0.25190839694656486, 0.8702290076335878, 0.9007633587786259, 0.8549618320610687, 0.25190839694656486, 0.24427480916030533, 0.2366412213740458, 0.24427480916030533, 0.2366412213740458, 0.22137404580152673, 0.22900763358778625, 0.24427480916030533, 0.3053435114503817, 0.7022900763358778, 0.2595419847328244, 0.25190839694656486, 0.2366412213740458, 0.22900763358778625, 0.21374045801526717, 0.1984732824427481, 0.20610687022900764, 0.20610687022900764, 0.7404580152671756, 0.9312977099236641, 0.6793893129770993, 0.1984732824427481, 0.183206106870229, 0.183206106870229, 0.19083969465648856, 0.19083969465648856, 0.19083969465648856, 0.1984732824427481, 0.1984732824427481, 0.1984732824427481, 0.183206106870229, 0.16793893129770993, 0.17557251908396945, 0.17557251908396945, 0.6335877862595419, 0.7022900763358778, 0.9236641221374046, 0.9465648854961832, 0.9236641221374046, 0.7404580152671756, 0.6412213740458015, 0.5877862595419847, 0.16030534351145037, 0.4198473282442748, 0.2595419847328244, 0.1297709923664122, 0.0916030534351145, 0.07633587786259542, 0.07633587786259542, 0.06870229007633588, 0.061068702290076333, 0.061068702290076333, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.16793893129770993, 0.1984732824427481, 0.20610687022900764, 0.46564885496183206, 0.5419847328244275, 0.6106870229007634, 0.6641221374045801, 0.7633587786259542, 0.8091603053435115, 0.6870229007633588, 0.6564885496183206, 0.5877862595419847, 0.4961832061068702, 0.44274809160305345, 0.183206106870229, 0.0916030534351145, 0.015267175572519083, 0.007633587786259542, 0.0, 0.0, 0.030534351145038167, 0.030534351145038167, 0.007633587786259542, 0.8549618320610687, 0.8854961832061069, 0.9083969465648855, 0.9465648854961832, 0.9465648854961832, 0.9389312977099237, 0.8931297709923665, 0.8625954198473282, 0.8396946564885496, 0.007633587786259542, 0.015267175572519083, 0.03816793893129771, 0.03816793893129771, 0.022900763358778626, 0.030534351145038167, 0.030534351145038167, 0.015267175572519083, 0.007633587786259542, 0.6183206106870229, 0.6641221374045801, 0.7404580152671756, 0.9465648854961832, 0.9312977099236641, 0.7251908396946565, 0.6412213740458015, 0.5954198473282443, 0.06870229007633588, 0.07633587786259542, 0.06870229007633588, 0.05343511450381679, 0.05343511450381679, 0.06870229007633588, 0.05343511450381679, 0.24427480916030533, 0.4961832061068702, 0.4198473282442748, 0.1297709923664122, 0.13740458015267176, 0.8931297709923665, 0.1297709923664122, 0.07633587786259542, 0.04580152671755725, 0.7557251908396947, 0.7938931297709924, 0.8473282442748091, 0.9465648854961832, 0.9007633587786259, 0.8320610687022901, 0.7786259541984732, 0.7557251908396947, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.05343511450381679, 0.05343511450381679, 0.061068702290076333, 0.08396946564885496, 0.12213740458015267, 0.1297709923664122, 0.1297709923664122, 0.16030534351145037, 0.16793893129770993, 0.3282442748091603], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Reprolysin_4.gap.json b/pfam_gap_rates/Reprolysin_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0687949e86a9900267a5ea3a0c9a2b31cab212b7
--- /dev/null
+++ b/pfam_gap_rates/Reprolysin_4.gap.json
@@ -0,0 +1 @@
+{"family": "Reprolysin_4", "n_seqs": 148, "length": 263, "gap_rates": [0.8851351351351351, 0.7567567567567568, 0.5472972972972973, 0.4864864864864865, 0.44594594594594594, 0.42567567567567566, 0.42567567567567566, 0.41216216216216217, 0.41216216216216217, 0.40540540540540543, 0.40540540540540543, 0.40540540540540543, 0.40540540540540543, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.40540540540540543, 0.39864864864864863, 0.8445945945945946, 0.8851351351351351, 0.9121621621621622, 0.9324324324324325, 0.918918918918919, 0.8986486486486487, 0.8716216216216216, 0.6081081081081081, 0.3918918918918919, 0.38513513513513514, 0.3918918918918919, 0.38513513513513514, 0.36486486486486486, 0.36486486486486486, 0.3581081081081081, 0.3581081081081081, 0.35135135135135137, 0.35135135135135137, 0.35135135135135137, 0.35135135135135137, 0.34459459459459457, 0.34459459459459457, 0.34459459459459457, 0.34459459459459457, 0.34459459459459457, 0.34459459459459457, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ResIII.gap.json b/pfam_gap_rates/ResIII.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a30ec8a5c9d3cb60792fb5b4aba9f848001dc9f3
--- /dev/null
+++ b/pfam_gap_rates/ResIII.gap.json
@@ -0,0 +1 @@
+{"family": "ResIII", "n_seqs": 5000, "length": 259, "gap_rates": [0.7624, 0.5188, 0.343, 0.2926, 0.2346, 0.1618, 0.14, 0.1356, 0.1278, 0.1232, 0.1198, 0.1162, 0.1144, 0.1186, 0.1254, 0.2266, 0.2328, 0.2674, 0.3078, 0.7078, 0.858, 0.8782, 0.909, 0.92, 0.9404, 0.9466, 0.9428, 0.9332, 0.9148, 0.894, 0.8634, 0.842, 0.1922, 0.0994, 0.0648, 0.0406, 0.0272, 0.025, 0.0234, 0.021, 0.0212, 0.0182, 0.0172, 0.016, 0.0158, 0.0156, 0.0154, 0.0154, 0.0152, 0.0152, 0.015, 0.0148, 0.0148, 0.0168, 0.0154, 0.0154, 0.0146, 0.0146, 0.0138, 0.0142, 0.0202, 0.3718, 0.428, 0.423, 0.5344, 0.5186, 0.8358, 0.9066, 0.9322, 0.9196, 0.88, 0.802, 0.018, 0.0136, 0.0124, 0.0124, 0.0122, 0.0118, 0.0122, 0.014, 0.0244, 0.0152, 0.0142, 0.0154, 0.0142, 0.013, 0.013, 0.014, 0.0168, 0.0168, 0.0168, 0.9484, 0.9496, 0.9474, 0.0182, 0.0426, 0.0442, 0.0472, 0.049, 0.0526, 0.062, 0.145, 0.3066, 0.3738, 0.662, 0.7318, 0.9136, 0.9372, 0.9486, 0.925, 0.8944, 0.7038, 0.573, 0.1902, 0.2108, 0.1748, 0.1586, 0.1516, 0.148, 0.1392, 0.1408, 0.1452, 0.1604, 0.1748, 0.1686, 0.8372, 0.895, 0.9106, 0.9274, 0.9404, 0.944, 0.9332, 0.9184, 0.9032, 0.8776, 0.7566, 0.6524, 0.5978, 0.5708, 0.5056, 0.4314, 0.3748, 0.1792, 0.1172, 0.1042, 0.1024, 0.1018, 0.1012, 0.1026, 0.1014, 0.1012, 0.1014, 0.1026, 0.1036, 0.106, 0.1086, 0.1108, 0.1144, 0.6148, 0.5972, 0.575, 0.8284, 0.8926, 0.9062, 0.915, 0.923, 0.9406, 0.9494, 0.9446, 0.929, 0.9196, 0.9114, 0.9, 0.85, 0.8018, 0.525, 0.5008, 0.362, 0.3382, 0.302, 0.2678, 0.2608, 0.261, 0.2616, 0.1898, 0.1874, 0.187, 0.1526, 0.9138, 0.9256, 0.9348, 0.9464, 0.9408, 0.9306, 0.9218, 0.8844, 0.1548, 0.1568, 0.1684, 0.2274, 0.2694, 0.2694, 0.2716, 0.2758, 0.2766, 0.277, 0.2772, 0.2794, 0.5396, 0.8502, 0.9114, 0.9352, 0.9234, 0.897, 0.8422, 0.3144, 0.8252, 0.8518, 0.8708, 0.918, 0.9354, 0.9414, 0.9282, 0.9042, 0.8666, 0.8416, 0.8146, 0.3124, 0.3228, 0.322, 0.3254, 0.3482, 0.9122, 0.948, 0.9328, 0.8946, 0.3466, 0.3412, 0.3452, 0.3628, 0.347, 0.3764, 0.9108, 0.9258, 0.9488, 0.9208, 0.8882, 0.3376, 0.334, 0.3354, 0.336, 0.3368, 0.3934, 0.3376, 0.3386, 0.3448, 0.3596, 0.5648, 0.904], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rft-1.gap.json b/pfam_gap_rates/Rft-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b841ea1a72c2431a89b4fb94592c11c5988869d
--- /dev/null
+++ b/pfam_gap_rates/Rft-1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RhaA.gap.json b/pfam_gap_rates/RhaA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf26823ea4eb97fedcead3683696475c0fc38adb
--- /dev/null
+++ b/pfam_gap_rates/RhaA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rhodanese_C.gap.json b/pfam_gap_rates/Rhodanese_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a68fd038bdba4b0a5f971a0fee1b6d45a6302417
--- /dev/null
+++ b/pfam_gap_rates/Rhodanese_C.gap.json
@@ -0,0 +1 @@
+{"family": "Rhodanese_C", "n_seqs": 497, "length": 91, "gap_rates": [0.2414486921529175, 0.01006036217303823, 0.008048289738430584, 0.004024144869215292, 0.004024144869215292, 0.004024144869215292, 0.004024144869215292, 0.004024144869215292, 0.004024144869215292, 0.004024144869215292, 0.004024144869215292, 0.778672032193159, 0.778672032193159, 0.004024144869215292, 0.004024144869215292, 0.30181086519114686, 0.4607645875251509, 0.8470824949698189, 0.9215291750503019, 0.9235412474849095, 0.93158953722334, 0.9336016096579477, 0.9416498993963782, 0.9456740442655935, 0.9456740442655935, 0.9336016096579477, 0.9336016096579477, 0.9235412474849095, 0.9215291750503019, 0.9094567404426559, 0.6458752515090543, 0.3561368209255533, 0.2977867203219316, 0.0, 0.15694164989939638, 0.0, 0.7927565392354124, 0.9195171026156942, 0.9456740442655935, 0.8672032193158954, 0.744466800804829, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004024144869215292, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7826961770623743, 0.7766599597585513, 0.052313883299798795, 0.9275653923541247, 0.0, 0.0, 0.0, 0.0, 0.004024144869215292, 0.08651911468812877, 0.08249496981891348, 0.012072434607645875, 0.012072434607645875, 0.002012072434607646, 0.002012072434607646, 0.002012072434607646, 0.004024144869215292, 0.004024144869215292, 0.006036217303822937, 0.008048289738430584, 0.008048289738430584, 0.008048289738430584, 0.008048289738430584, 0.014084507042253521, 0.03420523138832998, 0.05030181086519115, 0.06639839034205232, 0.08249496981891348, 0.08651911468812877, 0.10462776659959759, 0.8832997987927566, 0.1227364185110664, 0.12877263581488935, 0.17706237424547283, 0.1529175050301811, 0.1529175050301811, 0.4426559356136821], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonuc_L-PSP.gap.json b/pfam_gap_rates/Ribonuc_L-PSP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27b110c772cc2216c3c336b78c7c2a00a4e40954
--- /dev/null
+++ b/pfam_gap_rates/Ribonuc_L-PSP.gap.json
@@ -0,0 +1 @@
+{"family": "Ribonuc_L-PSP", "n_seqs": 4972, "length": 129, "gap_rates": [0.7280772325020113, 0.6190667739340305, 0.5514883346741754, 0.5160901045856798, 0.4650040225261464, 0.3901850362027353, 0.35478680611423974, 0.30370072405470633, 0.21842316975060339, 0.18543845534995979, 0.15265486725663716, 0.13676588897827835, 0.9448913917940467, 0.12429605792437651, 0.11967015285599357, 0.11021721641190668, 0.9211584875301689, 0.8734915526950925, 0.09694288012872083, 0.08185840707964602, 0.07240547063555913, 0.06617055510860821, 0.06255028157683025, 0.05913113435237329, 0.05711987127916331, 0.055913113435237326, 0.059734513274336286, 0.06255028157683025, 0.054706355591311345, 0.05430410297666935, 0.0583266291230893, 0.07079646017699115, 0.3175784392598552, 0.9446902654867256, 0.3002815768302494, 0.16472244569589703, 0.1514481094127112, 0.1425985518905873, 0.13616251005631536, 0.3073209975864843, 0.8226065969428801, 0.03700724054706356, 0.023732904263877714, 0.01850362027353178, 0.014883346741753822, 0.015084473049074818, 0.01246983105390185, 0.011866452131938857, 0.01086082059533387, 0.010458567980691875, 0.009855189058728881, 0.00925181013676589, 0.008246178600160902, 0.008246178600160902, 0.008246178600160902, 0.007642799678197908, 0.007240547063555913, 0.007039420756234915, 0.007039420756234915, 0.007039420756234915, 0.006838294448913918, 0.00663716814159292, 0.007039420756234915, 0.007843925985518906, 0.009452936444086887, 0.008045052292839904, 0.007039420756234915, 0.007039420756234915, 0.006436041834271922, 0.00663716814159292, 0.006838294448913918, 0.006033789219629927, 0.006436041834271922, 0.006234915526950925, 0.00663716814159292, 0.007039420756234915, 0.007441673370876911, 0.007843925985518906, 0.008246178600160902, 0.008648431214802896, 0.009452936444086887, 0.009050683829444892, 0.8919951729686243, 0.036403861625100564, 0.019509251810136765, 0.013073209975864843, 0.010659694288012871, 0.010257441673370877, 0.009654062751407884, 0.009654062751407884, 0.01005631536604988, 0.010659694288012871, 0.011061946902654867, 0.011464199517296863, 0.013073209975864843, 0.012872083668543845, 0.012872083668543845, 0.014481094127111826, 0.3067176186645213, 0.9448913917940467, 0.8968222043443282, 0.6432019308125503, 0.5937248592115849, 0.021319388576025743, 0.023531777956556716, 0.021319388576025743, 0.015687851971037812, 0.016492357200321803, 0.019308125502815767, 0.025945293644408687, 0.025543041029766695, 0.03238133547868061, 0.04082864038616251, 0.03378921962992759, 0.036403861625100564, 0.7123893805309734, 0.06938857602574416, 0.04324215607401448, 0.04062751407884151, 0.04123089300080451, 0.0418342719227675, 0.04384553499597747, 0.046460176991150445, 0.05108608205953339, 0.05490748189863234, 0.06375703942075624, 0.09070796460176991, 0.2083668543845535, 0.924979887369268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L15e.gap.json b/pfam_gap_rates/Ribosomal_L15e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef5c3acf5f401a31829822f1ff06cf8dfbd8da60
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L15e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L15e", "n_seqs": 514, "length": 191, "gap_rates": [0.1926070038910506, 0.14202334630350194, 0.1303501945525292, 0.12840466926070038, 0.12062256809338522, 0.11673151750972763, 0.11284046692607004, 0.11089494163424124, 0.10894941634241245, 0.10894941634241245, 0.10894941634241245, 0.11089494163424124, 0.11089494163424124, 0.12062256809338522, 0.11673151750972763, 0.11673151750972763, 0.10894941634241245, 0.08365758754863813, 0.07976653696498054, 0.07976653696498054, 0.08171206225680934, 0.07392996108949416, 0.07198443579766536, 0.07198443579766536, 0.06809338521400778, 0.06614785992217899, 0.06809338521400778, 0.06809338521400778, 0.06420233463035019, 0.0622568093385214, 0.058365758754863814, 0.05642023346303502, 0.05642023346303502, 0.05642023346303502, 0.05642023346303502, 0.05642023346303502, 0.06031128404669261, 0.058365758754863814, 0.06031128404669261, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.05252918287937743, 0.05252918287937743, 0.05252918287937743, 0.05642023346303502, 0.05642023346303502, 0.05642023346303502, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.05642023346303502, 0.05642023346303502, 0.05642023346303502, 0.05058365758754864, 0.042801556420233464, 0.048638132295719845, 0.04669260700389105, 0.048638132295719845, 0.048638132295719845, 0.04669260700389105, 0.04669260700389105, 0.04669260700389105, 0.04669260700389105, 0.05058365758754864, 0.05058365758754864, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.042801556420233464, 0.042801556420233464, 0.042801556420233464, 0.19649805447470817, 0.19455252918287938, 0.04474708171206226, 0.042801556420233464, 0.04085603112840467, 0.04085603112840467, 0.04085603112840467, 0.038910505836575876, 0.038910505836575876, 0.04085603112840467, 0.04085603112840467, 0.04474708171206226, 0.048638132295719845, 0.05252918287937743, 0.05252918287937743, 0.058365758754863814, 0.054474708171206226, 0.0622568093385214, 0.05642023346303502, 0.058365758754863814, 0.06031128404669261, 0.06031128404669261, 0.06031128404669261, 0.06031128404669261, 0.06031128404669261, 0.06031128404669261, 0.06031128404669261, 0.06031128404669261, 0.06031128404669261, 0.05642023346303502, 0.05642023346303502, 0.06614785992217899, 0.06614785992217899, 0.06809338521400778, 0.06809338521400778, 0.06420233463035019, 0.06420233463035019, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.06031128404669261, 0.06031128404669261, 0.06031128404669261, 0.06809338521400778, 0.07003891050583658, 0.07003891050583658, 0.07003891050583658, 0.07003891050583658, 0.07198443579766536, 0.07198443579766536, 0.07198443579766536, 0.07198443579766536, 0.07198443579766536, 0.07198443579766536, 0.07198443579766536, 0.07392996108949416, 0.07782101167315175, 0.07587548638132295, 0.07587548638132295, 0.07587548638132295, 0.07587548638132295, 0.07587548638132295, 0.07587548638132295, 0.07392996108949416, 0.07392996108949416, 0.07587548638132295, 0.07587548638132295, 0.07587548638132295, 0.07392996108949416, 0.07587548638132295, 0.07587548638132295, 0.07587548638132295, 0.07587548638132295, 0.08365758754863813, 0.08560311284046693, 0.08560311284046693, 0.08365758754863813, 0.0914396887159533, 0.09922178988326848, 0.08949416342412451, 0.08560311284046693, 0.08754863813229571, 0.08949416342412451, 0.0933852140077821, 0.0933852140077821, 0.0914396887159533, 0.0914396887159533, 0.0933852140077821, 0.0933852140077821, 0.09533073929961089, 0.09533073929961089, 0.09533073929961089, 0.09533073929961089, 0.09922178988326848, 0.09727626459143969, 0.09922178988326848, 0.09922178988326848, 0.10311284046692606, 0.10505836575875487, 0.5894941634241245, 0.10894941634241245, 0.10894941634241245, 0.10894941634241245, 0.3560311284046693, 0.13813229571984437, 0.11673151750972763, 0.11867704280155641, 0.13229571984435798, 0.11867704280155641, 0.14591439688715954, 0.122568093385214, 0.1517509727626459, 0.16731517509727625, 0.29571984435797666, 0.38132295719844356, 0.46108949416342415, 0.8638132295719845], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L18p.gap.json b/pfam_gap_rates/Ribosomal_L18p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74f519d71fb7137717bbcdd9491daab041ffe37a
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L18p.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L18p", "n_seqs": 2500, "length": 122, "gap_rates": [0.9204, 0.4116, 0.2524, 0.1968, 0.166, 0.1392, 0.1268, 0.1184, 0.1148, 0.112, 0.1112, 0.108, 0.1056, 0.104, 0.1008, 0.0984, 0.0972, 0.0944, 0.0932, 0.9488, 0.8696, 0.0868, 0.0852, 0.088, 0.1952, 0.114, 0.0972, 0.042, 0.028, 0.0256, 0.0244, 0.0232, 0.0232, 0.0204, 0.0204, 0.0204, 0.02, 0.0156, 0.0152, 0.0152, 0.0152, 0.0168, 0.0148, 0.0136, 0.0156, 0.018, 0.0184, 0.0132, 0.0132, 0.0128, 0.0124, 0.0136, 0.0124, 0.0136, 0.018, 0.0272, 0.0356, 0.0352, 0.04, 0.044, 0.052, 0.0516, 0.5676, 0.9232, 0.8968, 0.5208, 0.2852, 0.1796, 0.1024, 0.054, 0.022, 0.0192, 0.0192, 0.0136, 0.0112, 0.0096, 0.0088, 0.0092, 0.0088, 0.008, 0.0084, 0.008, 0.0072, 0.0064, 0.0064, 0.0064, 0.0064, 0.0072, 0.008, 0.008, 0.0084, 0.0084, 0.0088, 0.01, 0.0124, 0.0136, 0.0136, 0.0164, 0.018, 0.018, 0.0192, 0.0192, 0.0192, 0.02, 0.02, 0.0208, 0.0224, 0.0224, 0.0228, 0.0228, 0.0232, 0.024, 0.0264, 0.028, 0.0284, 0.0288, 0.0296, 0.0312, 0.0344, 0.0368, 0.0468, 0.0972], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L26.gap.json b/pfam_gap_rates/Ribosomal_L26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01044d1e66b790ef1d769f67bf21fd06b841e0fb
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L26.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L26", "n_seqs": 524, "length": 116, "gap_rates": [0.24045801526717558, 0.14694656488549618, 0.12022900763358779, 0.11641221374045801, 0.11450381679389313, 0.11259541984732824, 0.11068702290076336, 0.10877862595419847, 0.10877862595419847, 0.10877862595419847, 0.1049618320610687, 0.10305343511450382, 0.10305343511450382, 0.10305343511450382, 0.10305343511450382, 0.09923664122137404, 0.09923664122137404, 0.09541984732824428, 0.09541984732824428, 0.09351145038167939, 0.0916030534351145, 0.08778625954198473, 0.05152671755725191, 0.04770992366412214, 0.05152671755725191, 0.04961832061068702, 0.04961832061068702, 0.04961832061068702, 0.04961832061068702, 0.04961832061068702, 0.04961832061068702, 0.04770992366412214, 0.04770992366412214, 0.04580152671755725, 0.03625954198473282, 0.03625954198473282, 0.04198473282442748, 0.03816793893129771, 0.03816793893129771, 0.02480916030534351, 0.02480916030534351, 0.02480916030534351, 0.015267175572519083, 0.03625954198473282, 0.04198473282442748, 0.04389312977099236, 0.04389312977099236, 0.05916030534351145, 0.061068702290076333, 0.06870229007633588, 0.07061068702290077, 0.07061068702290077, 0.07251908396946564, 0.07633587786259542, 0.08015267175572519, 0.08015267175572519, 0.08396946564885496, 0.08396946564885496, 0.09541984732824428, 0.8187022900763359, 0.08396946564885496, 0.08396946564885496, 0.08015267175572519, 0.08015267175572519, 0.07824427480916031, 0.07442748091603053, 0.07061068702290077, 0.07061068702290077, 0.07061068702290077, 0.06679389312977099, 0.061068702290076333, 0.04961832061068702, 0.04389312977099236, 0.04198473282442748, 0.04007633587786259, 0.03625954198473282, 0.01717557251908397, 0.030534351145038167, 0.02862595419847328, 0.02862595419847328, 0.02862595419847328, 0.026717557251908396, 0.026717557251908396, 0.022900763358778626, 0.02480916030534351, 0.022900763358778626, 0.02862595419847328, 0.02862595419847328, 0.030534351145038167, 0.02862595419847328, 0.03244274809160305, 0.030534351145038167, 0.030534351145038167, 0.03244274809160305, 0.03244274809160305, 0.03435114503816794, 0.04007633587786259, 0.04007633587786259, 0.04198473282442748, 0.04580152671755725, 0.04580152671755725, 0.04770992366412214, 0.04961832061068702, 0.04961832061068702, 0.8568702290076335, 0.04961832061068702, 0.04961832061068702, 0.04961832061068702, 0.05152671755725191, 0.05725190839694656, 0.06297709923664122, 0.06679389312977099, 0.07061068702290077, 0.08587786259541985, 0.12595419847328243, 0.2767175572519084], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L31.gap.json b/pfam_gap_rates/Ribosomal_L31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad8f074541781e0c62601ec87d8ebf410cc7a4fa
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L31.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L31", "n_seqs": 2335, "length": 82, "gap_rates": [0.09207708779443255, 0.032548179871520345, 0.030406852248394005, 0.02740899357601713, 0.026124197002141327, 0.025267665952890792, 0.025267665952890792, 0.022698072805139188, 0.8458244111349036, 0.021413276231263382, 0.9494646680942184, 0.019700214132762312, 0.017558886509635975, 0.016274089935760173, 0.011991434689507495, 0.01113490364025696, 0.009850107066381156, 0.008993576017130621, 0.008137044967880086, 0.6685224839400429, 0.010706638115631691, 0.007280513918629551, 0.007280513918629551, 0.007280513918629551, 0.006852248394004282, 0.004710920770877944, 0.004710920770877944, 0.004710920770877944, 0.004282655246252677, 0.004282655246252677, 0.6115631691648822, 0.7019271948608137, 0.702355460385439, 0.7027837259100642, 0.7027837259100642, 0.7027837259100642, 0.8205567451820128, 0.7027837259100642, 0.7027837259100642, 0.7027837259100642, 0.7019271948608137, 0.6188436830835118, 0.5092077087794432, 0.4214132762312634, 0.005139186295503212, 0.005139186295503212, 0.005139186295503212, 0.005139186295503212, 0.004282655246252677, 0.0029978586723768737, 0.0021413276231263384, 0.0021413276231263384, 0.0021413276231263384, 0.0021413276231263384, 0.0021413276231263384, 0.0021413276231263384, 0.0017130620985010706, 0.0017130620985010706, 0.0021413276231263384, 0.001284796573875803, 0.0017130620985010706, 0.9353319057815845, 0.0021413276231263384, 0.0021413276231263384, 0.0017130620985010706, 0.0021413276231263384, 0.003426124197002141, 0.004710920770877944, 0.005139186295503212, 0.006423982869379015, 0.007280513918629551, 0.006423982869379015, 0.006852248394004282, 0.006852248394004282, 0.007280513918629551, 0.007280513918629551, 0.007708779443254818, 0.007708779443254818, 0.008565310492505354, 0.016274089935760173, 0.10706638115631692, 0.17730192719486082], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L31e.gap.json b/pfam_gap_rates/Ribosomal_L31e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8491b3e7bbd210393f8a5050d92f59ff3cb83c05
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L31e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L31e", "n_seqs": 603, "length": 84, "gap_rates": [0.34991708126036486, 0.28524046434494194, 0.22885572139303484, 0.21061359867330018, 0.1857379767827529, 0.15754560530679934, 0.12935323383084577, 0.12106135986733002, 0.11774461028192372, 0.11608623548922056, 0.16086235489220563, 0.1077943615257048, 0.0912106135986733, 0.0845771144278607, 0.0845771144278607, 0.08291873963515754, 0.07628524046434494, 0.07462686567164178, 0.05306799336650083, 0.04975124378109453, 0.04975124378109453, 0.04809286898839138, 0.04643449419568822, 0.05306799336650083, 0.05140961857379768, 0.05306799336650083, 0.05140961857379768, 0.05140961857379768, 0.04975124378109453, 0.05306799336650083, 0.05306799336650083, 0.05306799336650083, 0.05472636815920398, 0.05472636815920398, 0.05306799336650083, 0.05140961857379768, 0.05306799336650083, 0.05306799336650083, 0.03150912106135987, 0.029850746268656716, 0.03316749585406302, 0.9436152570480929, 0.9353233830845771, 0.029850746268656716, 0.03150912106135987, 0.03150912106135987, 0.03150912106135987, 0.03316749585406302, 0.03316749585406302, 0.03316749585406302, 0.03316749585406302, 0.03648424543946932, 0.03648424543946932, 0.03814262023217247, 0.04311774461028192, 0.04643449419568822, 0.04809286898839138, 0.04809286898839138, 0.04643449419568822, 0.04643449419568822, 0.04809286898839138, 0.04975124378109453, 0.05140961857379768, 0.05140961857379768, 0.05140961857379768, 0.05472636815920398, 0.05638474295190713, 0.05804311774461028, 0.05970149253731343, 0.06301824212271974, 0.06467661691542288, 0.08955223880597014, 0.12603648424543948, 0.14262023217247097, 0.16417910447761194, 0.1724709784411277, 0.18407960199004975, 0.18407960199004975, 0.19900497512437812, 0.20066334991708126, 0.2222222222222222, 0.23383084577114427, 0.2752902155887231, 0.5555555555555556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L34e.gap.json b/pfam_gap_rates/Ribosomal_L34e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f24f81eb61dc77a2a952a3cd9e2a564cbe455d3
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L34e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L34e", "n_seqs": 459, "length": 101, "gap_rates": [0.2962962962962963, 0.30718954248366015, 0.906318082788671, 0.16993464052287582, 0.1655773420479303, 0.16339869281045752, 0.15904139433551198, 0.15904139433551198, 0.1568627450980392, 0.1503267973856209, 0.11328976034858387, 0.10021786492374728, 0.0915032679738562, 0.08714596949891068, 0.0784313725490196, 0.07625272331154684, 0.07625272331154684, 0.0718954248366013, 0.06753812636165578, 0.06535947712418301, 0.06318082788671024, 0.06318082788671024, 0.06318082788671024, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.05010893246187364, 0.04793028322440087, 0.05010893246187364, 0.05010893246187364, 0.05010893246187364, 0.05010893246187364, 0.05228758169934641, 0.05010893246187364, 0.05010893246187364, 0.04793028322440087, 0.04793028322440087, 0.04793028322440087, 0.0457516339869281, 0.0457516339869281, 0.05010893246187364, 0.05010893246187364, 0.05228758169934641, 0.05228758169934641, 0.9455337690631809, 0.9455337690631809, 0.05010893246187364, 0.05010893246187364, 0.054466230936819175, 0.9477124183006536, 0.9411764705882353, 0.04793028322440087, 0.04357298474945534, 0.04357298474945534, 0.0457516339869281, 0.04357298474945534, 0.04139433551198257, 0.04139433551198257, 0.030501089324618737, 0.030501089324618737, 0.034858387799564274, 0.037037037037037035, 0.037037037037037035, 0.04357298474945534, 0.037037037037037035, 0.04139433551198257, 0.04357298474945534, 0.7995642701525054, 0.7973856209150327, 0.04139433551198257, 0.0392156862745098, 0.0392156862745098, 0.037037037037037035, 0.037037037037037035, 0.0392156862745098, 0.0392156862745098, 0.034858387799564274, 0.034858387799564274, 0.034858387799564274, 0.034858387799564274, 0.034858387799564274, 0.034858387799564274, 0.034858387799564274, 0.037037037037037035, 0.034858387799564274, 0.034858387799564274, 0.034858387799564274, 0.037037037037037035, 0.037037037037037035, 0.0392156862745098, 0.04139433551198257, 0.04139433551198257, 0.0392156862745098, 0.04357298474945534, 0.04357298474945534, 0.058823529411764705, 0.06971677559912855, 0.0784313725490196, 0.0915032679738562, 0.12200435729847495, 0.13071895424836602], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L36.gap.json b/pfam_gap_rates/Ribosomal_L36.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee5d14538904693b1d042734ff1686890f817a41
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L36.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L36", "n_seqs": 1683, "length": 41, "gap_rates": [0.027332144979203804, 0.009506833036244802, 0.0071301247771836, 0.0071301247771836, 0.0071301247771836, 0.0059417706476530005, 0.004753416518122401, 0.0041592394533571005, 0.0041592394533571005, 0.0017825311942959, 0.0017825311942959, 0.809863339275104, 0.8508615567439097, 0.803921568627451, 0.0011883541295306002, 0.0011883541295306002, 0.0011883541295306002, 0.0011883541295306002, 0.0011883541295306002, 0.0005941770647653001, 0.0005941770647653001, 0.0005941770647653001, 0.0, 0.0, 0.0005941770647653001, 0.0005941770647653001, 0.0011883541295306002, 0.0011883541295306002, 0.0011883541295306002, 0.0011883541295306002, 0.5193107546048723, 0.0011883541295306002, 0.0017825311942959, 0.0011883541295306002, 0.0011883541295306002, 0.0011883541295306002, 0.0011883541295306002, 0.0017825311942959, 0.011883541295306001, 0.0338680926916221, 0.0855614973262032], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L40e.gap.json b/pfam_gap_rates/Ribosomal_L40e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15e88ea9a40425ffeaac3a732bc8660ebaa74264
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L40e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L40e", "n_seqs": 429, "length": 50, "gap_rates": [0.24708624708624707, 0.20046620046620048, 0.1888111888111888, 0.1864801864801865, 0.18181818181818182, 0.16783216783216784, 0.15151515151515152, 0.1445221445221445, 0.13053613053613053, 0.12121212121212122, 0.11421911421911422, 0.10955710955710955, 0.09324009324009325, 0.07692307692307693, 0.05128205128205128, 0.027972027972027972, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.05128205128205128, 0.04895104895104895, 0.05128205128205128, 0.053613053613053616, 0.055944055944055944, 0.055944055944055944, 0.05827505827505827, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.21445221445221446, 0.20512820512820512, 0.055944055944055944, 0.055944055944055944, 0.10955710955710955, 0.07692307692307693, 0.10256410256410256, 0.08158508158508158, 0.07925407925407925, 0.0675990675990676, 0.07692307692307693, 0.07925407925407925, 0.09324009324009325, 0.10955710955710955, 0.16083916083916083, 0.3752913752913753], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L50.gap.json b/pfam_gap_rates/Ribosomal_L50.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80af70b3c83903ba10b66e015f5ff2ecc6b641e2
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L50.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L50", "n_seqs": 151, "length": 128, "gap_rates": [0.7284768211920529, 0.6225165562913907, 0.5165562913907285, 0.4768211920529801, 0.46357615894039733, 0.4304635761589404, 0.41721854304635764, 0.4105960264900662, 0.4105960264900662, 0.40397350993377484, 0.3841059602649007, 0.3708609271523179, 0.3576158940397351, 0.33774834437086093, 0.33112582781456956, 0.3443708609271523, 0.3509933774834437, 0.3509933774834437, 0.3509933774834437, 0.3509933774834437, 0.36423841059602646, 0.3973509933774834, 0.44370860927152317, 0.7615894039735099, 0.5629139072847682, 0.6887417218543046, 0.7152317880794702, 0.7947019867549668, 0.8410596026490066, 0.8741721854304636, 0.8874172185430463, 0.9205298013245033, 0.9403973509933775, 0.9403973509933775, 0.9006622516556292, 0.8874172185430463, 0.8741721854304636, 0.8278145695364238, 0.7417218543046358, 0.7086092715231788, 0.6622516556291391, 0.2251655629139073, 0.1390728476821192, 0.11258278145695365, 0.11258278145695365, 0.06622516556291391, 0.026490066225165563, 0.026490066225165563, 0.019867549668874173, 0.019867549668874173, 0.09933774834437085, 0.8874172185430463, 0.019867549668874173, 0.039735099337748346, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9403973509933775, 0.6291390728476821, 0.6158940397350994, 0.32450331125827814, 0.33112582781456956, 0.3509933774834437, 0.36423841059602646, 0.3576158940397351, 0.33774834437086093, 0.07947019867549669, 0.25165562913907286, 0.2185430463576159, 0.152317880794702, 0.13245033112582782, 0.13245033112582782, 0.1456953642384106, 0.1390728476821192, 0.1456953642384106, 0.13245033112582782, 0.13245033112582782, 0.1390728476821192, 0.1456953642384106, 0.15894039735099338, 0.15894039735099338, 0.5629139072847682, 0.5562913907284768, 0.543046357615894, 0.6754966887417219, 0.9139072847682119, 0.17218543046357615, 0.16556291390728478, 0.16556291390728478, 0.16556291390728478, 0.18543046357615894, 0.2052980132450331, 0.2847682119205298, 0.44370860927152317, 0.8675496688741722], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S17e.gap.json b/pfam_gap_rates/Ribosomal_S17e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d178ae7ef1a562af8cca8162187816a690d2772
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S17e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S17e", "n_seqs": 500, "length": 125, "gap_rates": [0.26, 0.168, 0.164, 0.128, 0.128, 0.124, 0.12, 0.082, 0.078, 0.078, 0.076, 0.074, 0.074, 0.074, 0.076, 0.072, 0.072, 0.07, 0.07, 0.07, 0.066, 0.066, 0.06, 0.056, 0.056, 0.058, 0.058, 0.056, 0.054, 0.052, 0.052, 0.052, 0.05, 0.052, 0.052, 0.052, 0.056, 0.054, 0.054, 0.054, 0.054, 0.054, 0.056, 0.056, 0.054, 0.054, 0.05, 0.05, 0.052, 0.048, 0.05, 0.054, 0.054, 0.052, 0.05, 0.054, 0.07, 0.062, 0.076, 0.1, 0.138, 0.146, 0.16, 0.164, 0.17, 0.172, 0.18, 0.18, 0.18, 0.18, 0.18, 0.178, 0.178, 0.176, 0.174, 0.172, 0.174, 0.174, 0.174, 0.176, 0.176, 0.178, 0.178, 0.178, 0.178, 0.182, 0.182, 0.184, 0.182, 0.186, 0.186, 0.724, 0.834, 0.922, 0.872, 0.77, 0.702, 0.186, 0.184, 0.186, 0.186, 0.188, 0.19, 0.19, 0.194, 0.194, 0.194, 0.194, 0.194, 0.194, 0.194, 0.194, 0.196, 0.198, 0.208, 0.226, 0.246, 0.272, 0.39, 0.366, 0.38, 0.606, 0.716, 0.808, 0.89], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S19.gap.json b/pfam_gap_rates/Ribosomal_S19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44bd09d0a77b5496c6215a68906f738a123699ba
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S19.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S19", "n_seqs": 2983, "length": 88, "gap_rates": [0.10626885685551458, 0.09386523633925578, 0.08514917867918204, 0.07408649011062689, 0.06905799530673819, 0.0670465973851827, 0.8421052631578947, 0.06570566543747905, 0.06537043245055313, 0.06369426751592357, 0.05900100569896078, 0.062018102581294, 0.06235333556821991, 0.06034193764666443, 0.0519611129735166, 0.04760308414347972, 0.05531344284277573, 0.051625879986590684, 0.047267851156553804, 0.04693261816962789, 0.048273550117331546, 0.05263157894736842, 0.937981897418706, 0.9014415018437815, 0.12001340931947703, 0.19041233657391887, 0.062018102581294, 0.8746228628897084, 0.9182031511900771, 0.879651357693597, 0.8588669125041904, 0.03184713375796178, 0.028159570901776735, 0.024472008045591687, 0.02179014415018438, 0.01843781428092524, 0.015085484411666107, 0.014415018437814281, 0.013744552463962454, 0.013074086490110626, 0.012738853503184714, 0.012068387529332886, 0.011733154542406973, 0.010056989607777405, 0.009721756620851492, 0.009051290646999664, 0.009721756620851492, 0.009721756620851492, 0.008045591686221924, 0.008045591686221924, 0.0073751257123700975, 0.008045591686221924, 0.008045591686221924, 0.0077103586992960105, 0.008045591686221924, 0.0073751257123700975, 0.00670465973851827, 0.00670465973851827, 0.00670465973851827, 0.006369426751592357, 0.006369426751592357, 0.00670465973851827, 0.00670465973851827, 0.00670465973851827, 0.0073751257123700975, 0.0077103586992960105, 0.0077103586992960105, 0.008045591686221924, 0.008380824673147838, 0.01039222259470332, 0.009386523633925578, 0.009386523633925578, 0.009386523633925578, 0.009386523633925578, 0.010056989607777405, 0.011062688568555145, 0.011062688568555145, 0.011062688568555145, 0.011397921555481059, 0.0124036205162588, 0.012738853503184714, 0.016761649346295676, 0.016761649346295676, 0.017767348307073418, 0.02011397921555481, 0.02380154207173986, 0.04089842440496145, 0.07308079114984914], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S21e.gap.json b/pfam_gap_rates/Ribosomal_S21e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fed8d7d9db5c1a37a6c946c1c066d957146d3c37
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S21e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S21e", "n_seqs": 383, "length": 81, "gap_rates": [0.17493472584856398, 0.1618798955613577, 0.1227154046997389, 0.1174934725848564, 0.1122715404699739, 0.10443864229765012, 0.09660574412532637, 0.09399477806788512, 0.08616187989556136, 0.0835509138381201, 0.08093994778067885, 0.0783289817232376, 0.0783289817232376, 0.07571801566579635, 0.05221932114882506, 0.04960835509138381, 0.04699738903394256, 0.02349869451697128, 0.020887728459530026, 0.018276762402088774, 0.018276762402088774, 0.018276762402088774, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.015665796344647518, 0.013054830287206266, 0.013054830287206266, 0.013054830287206266, 0.013054830287206266, 0.010443864229765013, 0.013054830287206266, 0.013054830287206266, 0.005221932114882507, 0.005221932114882507, 0.005221932114882507, 0.005221932114882507, 0.010443864229765013, 0.007832898172323759, 0.010443864229765013, 0.7154046997389034, 0.010443864229765013, 0.010443864229765013, 0.010443864229765013, 0.007832898172323759, 0.010443864229765013, 0.7650130548302873, 0.010443864229765013, 0.007832898172323759, 0.007832898172323759, 0.013054830287206266, 0.013054830287206266, 0.013054830287206266, 0.013054830287206266, 0.018276762402088774, 0.018276762402088774, 0.018276762402088774, 0.018276762402088774, 0.018276762402088774, 0.018276762402088774, 0.020887728459530026, 0.020887728459530026, 0.020887728459530026, 0.04177545691906005, 0.04699738903394256, 0.05221932114882506, 0.05221932114882506, 0.057441253263707574, 0.06005221932114883, 0.06527415143603134, 0.06788511749347259, 0.0783289817232376, 0.08877284595300261, 0.09399477806788512, 0.09399477806788512, 0.10182767624020887, 0.1122715404699739, 0.13577023498694518, 0.2689295039164491, 0.3289817232375979, 0.7597911227154047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S28e.gap.json b/pfam_gap_rates/Ribosomal_S28e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73ae0850c9d92db316b8126a642b2ac35895c003
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S28e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S28e", "n_seqs": 424, "length": 65, "gap_rates": [0.8207547169811321, 0.21462264150943397, 0.12735849056603774, 0.0660377358490566, 0.04009433962264151, 0.04009433962264151, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.01650943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.007075471698113208, 0.007075471698113208, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.01179245283018868, 0.01179245283018868, 0.007075471698113208, 0.007075471698113208, 0.08254716981132075, 0.7240566037735849, 0.6792452830188679, 0.9198113207547169, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.009433962264150943, 0.009433962264150943, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.01179245283018868, 0.02830188679245283, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.04009433962264151, 0.04009433962264151, 0.04245283018867924, 0.04481132075471698, 0.04481132075471698, 0.049528301886792456, 0.05188679245283019, 0.05188679245283019, 0.05660377358490566, 0.0589622641509434, 0.06132075471698113, 0.06367924528301887, 0.10613207547169812, 0.15566037735849056], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S8.gap.json b/pfam_gap_rates/Ribosomal_S8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d60bc66503c9e11c927d8e45016ea25a0b28a12b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S8.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S8", "n_seqs": 3026, "length": 135, "gap_rates": [0.25644415069398546, 0.19993390614672835, 0.06609385327164574, 0.061467283542630535, 0.04527428949107733, 0.036351619299405155, 0.03205551883674818, 0.03139458030403172, 0.031064111037673495, 0.029742233972240583, 0.029081295439524125, 0.029081295439524125, 0.028750826173165895, 0.028750826173165895, 0.02775941837409121, 0.026437541308658295, 0.026107072042300065, 0.025776602775941838, 0.025776602775941838, 0.02511566424322538, 0.024454725710508923, 0.022141440846001323, 0.019167217448777262, 0.8198942498347653, 0.017184401850627893, 0.016853932584269662, 0.016853932584269662, 0.015862524785194978, 0.014540647719762063, 0.014540647719762063, 0.014871116986120292, 0.014871116986120292, 0.014540647719762063, 0.014210178453403834, 0.013879709187045605, 0.013218770654329148, 0.011566424322538004, 0.011566424322538004, 0.011566424322538004, 0.011896893588896233, 0.011566424322538004, 0.011896893588896233, 0.011896893588896233, 0.010905485789821546, 0.011235955056179775, 0.011235955056179775, 0.011896893588896233, 0.011896893588896233, 0.05452742894910773, 0.21447455386649042, 0.050892267019167214, 0.06741573033707865, 0.016853932584269662, 0.8955717118307998, 0.9368803701255783, 0.8598810310641111, 0.017184401850627893, 0.042630535360211504, 0.014540647719762063, 0.903172504957039, 0.8962326503635162, 0.013218770654329148, 0.013218770654329148, 0.013218770654329148, 0.013218770654329148, 0.013218770654329148, 0.013549239920687376, 0.014540647719762063, 0.01520158625247852, 0.016192994051553205, 0.8754130865829478, 0.4058162590879048, 0.0806345009914078, 0.026107072042300065, 0.020819563780568408, 0.016192994051553205, 0.013549239920687376, 0.014871116986120292, 0.021150033046926635, 0.031064111037673495, 0.025446133509583607, 0.016523463317911435, 0.016853932584269662, 0.018506278916060808, 0.019167217448777262, 0.020489094514210177, 0.021150033046926635, 0.023132848645076007, 0.02280237937871778, 0.0783212161269002, 0.06939854593522803, 0.07567746199603437, 0.0991407799074686, 0.09583608724388631, 0.05981493721083939, 0.027098479841374753, 0.025446133509583607, 0.030733641771315268, 0.11202908129543952, 0.14309319233311302, 0.05122273628552545, 0.026437541308658295, 0.023132848645076007, 0.026437541308658295, 0.027098479841374753, 0.025446133509583607, 0.025776602775941838, 0.026437541308658295, 0.027098479841374753, 0.02742894910773298, 0.028089887640449437, 0.028089887640449437, 0.028420356906807668, 0.028420356906807668, 0.028750826173165895, 0.028750826173165895, 0.029081295439524125, 0.029411764705882353, 0.029742233972240583, 0.03040317250495704, 0.030733641771315268, 0.03139458030403172, 0.03238598810310641, 0.03205551883674818, 0.03271645736946464, 0.033707865168539325, 0.034368803701255786, 0.036351619299405155, 0.03668208856576338, 0.03866490416391276, 0.03998678122934567, 0.04130865829477859, 0.046265697290152015, 0.061467283542630535, 0.2233972240581626], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rieske_2.gap.json b/pfam_gap_rates/Rieske_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..109c362b77e2ed4b202acc2f209e1ee2ce5ca4b3
--- /dev/null
+++ b/pfam_gap_rates/Rieske_2.gap.json
@@ -0,0 +1 @@
+{"family": "Rieske_2", "n_seqs": 623, "length": 129, "gap_rates": [0.5248796147672552, 0.2086677367576244, 0.18459069020866772, 0.13162118780096307, 0.09791332263242375, 0.08507223113964688, 0.07223113964686999, 0.06581059390048154, 0.052969502407704656, 0.051364365971107544, 0.04975922953451043, 0.0449438202247191, 0.04333868378812199, 0.04012841091492777, 0.038523274478330656, 0.033707865168539325, 0.9309791332263242, 0.9486356340288925, 0.9373996789727127, 0.9213483146067416, 0.028892455858747994, 0.027287319422150885, 0.027287319422150885, 0.024077046548956663, 0.01765650080256822, 0.8747993579454254, 0.016051364365971106, 0.016051364365971106, 0.012841091492776886, 0.012841091492776886, 0.012841091492776886, 0.009630818619582664, 0.009630818619582664, 0.009630818619582664, 0.009630818619582664, 0.008025682182985553, 0.9004815409309791, 0.9486356340288925, 0.7560192616372392, 0.22632423756019263, 0.016051364365971106, 0.006420545746388443, 0.006420545746388443, 0.006420545746388443, 0.006420545746388443, 0.008025682182985553, 0.008025682182985553, 0.008025682182985553, 0.008025682182985553, 0.009630818619582664, 0.009630818619582664, 0.009630818619582664, 0.009630818619582664, 0.33547351524879615, 0.08025682182985554, 0.0593900481540931, 0.009630818619582664, 0.008025682182985553, 0.008025682182985553, 0.009630818619582664, 0.006420545746388443, 0.006420545746388443, 0.006420545746388443, 0.006420545746388443, 0.004815409309791332, 0.004815409309791332, 0.006420545746388443, 0.8362760834670947, 0.3146067415730337, 0.3162118780096308, 0.3146067415730337, 0.29213483146067415, 0.008025682182985553, 0.008025682182985553, 0.008025682182985553, 0.009630818619582664, 0.008025682182985553, 0.006420545746388443, 0.006420545746388443, 0.006420545746388443, 0.006420545746388443, 0.004815409309791332, 0.004815409309791332, 0.004815409309791332, 0.004815409309791332, 0.004815409309791332, 0.004815409309791332, 0.004815409309791332, 0.009630818619582664, 0.009630818619582664, 0.011235955056179775, 0.011235955056179775, 0.8298555377207063, 0.8635634028892456, 0.8667736757624398, 0.8747993579454254, 0.8876404494382022, 0.8876404494382022, 0.9325842696629213, 0.9470304975922953, 0.9293739967897271, 0.8876404494382022, 0.8860353130016051, 0.8715890850722311, 0.8651685393258427, 0.8314606741573034, 0.8234349919743178, 0.02086677367576244, 0.019261637239165328, 0.011235955056179775, 0.012841091492776886, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.012841091492776886, 0.012841091492776886, 0.014446227929373997, 0.014446227929373997, 0.01765650080256822, 0.027287319422150885, 0.9149277688603531, 0.04975922953451043, 0.056179775280898875, 0.07704654895666131, 0.08186195826645265, 0.11396468699839486, 0.21669341894060995, 0.7528089887640449], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rnf-Nqr.gap.json b/pfam_gap_rates/Rnf-Nqr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62f7e54a339426d2662915272d83e304545ac9c7
--- /dev/null
+++ b/pfam_gap_rates/Rnf-Nqr.gap.json
@@ -0,0 +1 @@
+{"family": "Rnf-Nqr", "n_seqs": 2079, "length": 224, "gap_rates": [0.8807118807118807, 0.4603174603174603, 0.14381914381914382, 0.0582010582010582, 0.04377104377104377, 0.035594035594035595, 0.031746031746031744, 0.02886002886002886, 0.026455026455026454, 0.025493025493025494, 0.024531024531024532, 0.02405002405002405, 0.02356902356902357, 0.023088023088023088, 0.021164021164021163, 0.02068302068302068, 0.02068302068302068, 0.02068302068302068, 0.019721019721019722, 0.019721019721019722, 0.019721019721019722, 0.01875901875901876, 0.01924001924001924, 0.01875901875901876, 0.017797017797017797, 0.01443001443001443, 0.01443001443001443, 0.01443001443001443, 0.01443001443001443, 0.01443001443001443, 0.01443001443001443, 0.01443001443001443, 0.013468013468013467, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.013468013468013467, 0.011063011063011063, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010101010101010102, 0.00962000962000962, 0.00913900913900914, 0.00913900913900914, 0.00913900913900914, 0.00913900913900914, 0.00913900913900914, 0.008658008658008658, 0.008658008658008658, 0.008177008177008177, 0.008658008658008658, 0.008658008658008658, 0.00913900913900914, 0.00962000962000962, 0.00962000962000962, 0.010582010582010581, 0.010582010582010581, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.5031265031265031, 0.5122655122655123, 0.8374218374218374, 0.8398268398268398, 0.8407888407888408, 0.8792688792688793, 0.8821548821548821, 0.9413179413179413, 0.9437229437229437, 0.8831168831168831, 0.8811928811928812, 0.8489658489658489, 0.8403078403078403, 0.8393458393458394, 0.5483405483405484, 0.5031265031265031, 0.5026455026455027, 0.010101010101010102, 0.00962000962000962, 0.00962000962000962, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010582010582010581, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.011063011063011063, 0.010582010582010581, 0.010101010101010102, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010101010101010102, 0.010101010101010102, 0.010582010582010581, 0.010101010101010102, 0.010582010582010581, 0.011063011063011063, 0.011544011544011544, 0.011063011063011063, 0.011544011544011544, 0.011544011544011544, 0.011063011063011063, 0.011063011063011063, 0.011063011063011063, 0.010582010582010581, 0.011063011063011063, 0.012506012506012507, 0.012506012506012507, 0.012025012025012025, 0.011544011544011544, 0.012025012025012025, 0.012025012025012025, 0.011544011544011544, 0.012025012025012025, 0.012025012025012025, 0.011544011544011544, 0.011544011544011544, 0.011063011063011063, 0.011063011063011063, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.011544011544011544, 0.011544011544011544, 0.03511303511303511, 0.025493025493025494, 0.012987012987012988, 0.911976911976912, 0.5002405002405003, 0.012506012506012507, 0.013468013468013467, 0.012987012987012988, 0.012025012025012025, 0.012506012506012507, 0.012025012025012025, 0.012025012025012025, 0.012025012025012025, 0.012025012025012025, 0.011544011544011544, 0.012506012506012507, 0.011544011544011544, 0.011544011544011544, 0.011063011063011063, 0.011063011063011063, 0.012025012025012025, 0.012987012987012988, 0.012506012506012507, 0.012506012506012507, 0.012506012506012507, 0.012506012506012507, 0.012506012506012507, 0.012025012025012025, 0.012506012506012507, 0.012506012506012507, 0.012506012506012507, 0.012506012506012507, 0.012506012506012507, 0.012506012506012507, 0.012506012506012507, 0.012987012987012988, 0.5050505050505051, 0.5055315055315055, 0.506012506012506, 0.5064935064935064, 0.506012506012506, 0.5055315055315055, 0.5050505050505051, 0.5050505050505051, 0.013949013949013949, 0.014911014911014911, 0.014911014911014911, 0.014911014911014911, 0.014911014911014911, 0.01443001443001443, 0.5088985088985089, 0.5093795093795094, 0.5093795093795094, 0.5137085137085137, 0.5824915824915825, 0.7142857142857143, 0.7205387205387206, 0.8393458393458394, 0.8532948532948533, 0.8720538720538721, 0.8961038961038961, 0.9009139009139009, 0.8888888888888888, 0.8648388648388649, 0.8475228475228476, 0.7258297258297258, 0.7181337181337182, 0.7056277056277056, 0.5363155363155363, 0.5098605098605099, 0.5093795093795094, 0.5093795093795094, 0.5088985088985089, 0.01443001443001443, 0.015392015392015393, 0.015873015873015872, 0.015392015392015393, 0.015392015392015393, 0.015873015873015872, 0.016835016835016835, 0.016354016354016353, 0.016354016354016353, 0.016835016835016835, 0.016835016835016835, 0.017797017797017797, 0.017797017797017797, 0.01924001924001924, 0.022126022126022125, 0.029822029822029823, 0.059644059644059645, 0.656084656084656], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Root_cap.gap.json b/pfam_gap_rates/Root_cap.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51c47fe573ae20df9aa9d65118be7567e0557486
--- /dev/null
+++ b/pfam_gap_rates/Root_cap.gap.json
@@ -0,0 +1 @@
+{"family": "Root_cap", "n_seqs": 180, "length": 57, "gap_rates": [0.1111111111111111, 0.05, 0.05, 0.044444444444444446, 0.044444444444444446, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.027777777777777776, 0.027777777777777776, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.016666666666666666, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.005555555555555556, 0.005555555555555556, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005555555555555556, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.016666666666666666, 0.027777777777777776, 0.027777777777777776], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rotamase.gap.json b/pfam_gap_rates/Rotamase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a6528755f86bf18d8b33440d7aae7d78bf1b515
--- /dev/null
+++ b/pfam_gap_rates/Rotamase.gap.json
@@ -0,0 +1 @@
+{"family": "Rotamase", "n_seqs": 2061, "length": 119, "gap_rates": [0.5031538088306647, 0.44541484716157204, 0.4376516254245512, 0.43085880640465796, 0.4192139737991266, 0.413391557496361, 0.4041727316836487, 0.3964095099466278, 0.8219311014070839, 0.8301795245026686, 0.8355167394468704, 0.8437651625424551, 0.8471615720524017, 0.8447355652595827, 0.8393983503153809, 0.8335759340126152, 0.8258127122755944, 0.6555070354196991, 0.5701115963124697, 0.4386220281416788, 0.33624454148471616, 0.3071324599708879, 0.2823871906841339, 0.2663755458515284, 0.24648229015041243, 0.18340611353711792, 0.15283842794759825, 0.09558466763706938, 0.06647258612324114, 0.039786511402231925, 0.026686074721009218, 0.022804463852498787, 0.022319262493934983, 0.021348859776807377, 0.020378457059679767, 0.018437651625424552, 0.017952450266860747, 0.019408054342552158, 0.016982047549733138, 0.015041242115477924, 0.015041242115477924, 0.029597282872392043, 0.9291606016496846, 0.9437166424065987, 0.9194565744784086, 0.020863658418243572, 0.4022319262493935, 0.010189228529839884, 0.008733624454148471, 0.0077632217370208634, 0.006307617661329452, 0.005822416302765648, 0.005822416302765648, 0.006307617661329452, 0.006307617661329452, 0.005822416302765648, 0.6171761280931587, 0.022804463852498787, 0.019408054342552158, 0.019893255701115962, 0.034934497816593885, 0.014070839398350316, 0.012130033964095099, 0.011644832605531296, 0.010189228529839884, 0.00727802037845706, 0.00727802037845706, 0.006792819019893256, 0.006307617661329452, 0.022804463852498787, 0.009218825812712276, 0.009704027171276079, 0.012130033964095099, 0.006307617661329452, 0.9063561377971858, 0.9349830179524503, 0.9442018437651626, 0.9398350315380883, 0.9325570111596313, 0.8951965065502183, 0.009218825812712276, 0.006307617661329452, 0.006307617661329452, 0.005822416302765648, 0.006307617661329452, 0.005822416302765648, 0.00727802037845706, 0.00727802037845706, 0.005822416302765648, 0.006307617661329452, 0.00727802037845706, 0.005822416302765648, 0.005822416302765648, 0.006307617661329452, 0.00727802037845706, 0.9272197962154294, 0.0077632217370208634, 0.008248423095584668, 0.010189228529839884, 0.011644832605531296, 0.9136341581756429, 0.011159631246967491, 0.015526443474041727, 0.016496846191169336, 0.9475982532751092, 0.9446870451237264, 0.03299369238233867, 0.051431344007763224, 0.060164968461911696, 0.06550218340611354, 0.06695778748180495, 0.0732654051431344, 0.07666181465308103, 0.07860262008733625, 0.08151382823871907, 0.09073265405143134, 0.14313440077632217, 0.4027171276079573, 0.9189713731198448], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rpp20.gap.json b/pfam_gap_rates/Rpp20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b7a2c38a9d39a9c7b20b9fc47be202fc2e7281e
--- /dev/null
+++ b/pfam_gap_rates/Rpp20.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RuBisCO_small.gap.json b/pfam_gap_rates/RuBisCO_small.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..024b95dacab66aa751de1ce0ee495cdfe9608d57
--- /dev/null
+++ b/pfam_gap_rates/RuBisCO_small.gap.json
@@ -0,0 +1 @@
+{"family": "RuBisCO_small", "n_seqs": 578, "length": 111, "gap_rates": [0.43944636678200694, 0.39792387543252594, 0.3961937716262976, 0.3892733564013841, 0.3771626297577855, 0.370242214532872, 0.35986159169550175, 0.3460207612456747, 0.3166089965397924, 0.27854671280276816, 0.21107266435986158, 0.12629757785467127, 0.07093425605536333, 0.050173010380622836, 0.04325259515570934, 0.03806228373702422, 0.03633217993079585, 0.03633217993079585, 0.03806228373702422, 0.03806228373702422, 0.03806228373702422, 0.03633217993079585, 0.03633217993079585, 0.03806228373702422, 0.03460207612456748, 0.0328719723183391, 0.0328719723183391, 0.031141868512110725, 0.031141868512110725, 0.031141868512110725, 0.02768166089965398, 0.02249134948096886, 0.02422145328719723, 0.02422145328719723, 0.025951557093425604, 0.029411764705882353, 0.029411764705882353, 0.04844290657439446, 0.025951557093425604, 0.740484429065744, 0.740484429065744, 0.7422145328719724, 0.7422145328719724, 0.7422145328719724, 0.8442906574394463, 0.7422145328719724, 0.7422145328719724, 0.7422145328719724, 0.7422145328719724, 0.740484429065744, 0.7318339100346021, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.02768166089965398, 0.025951557093425604, 0.3685121107266436, 0.3685121107266436, 0.029411764705882353, 0.025951557093425604, 0.02249134948096886, 0.02249134948096886, 0.020761245674740483, 0.02422145328719723, 0.02422145328719723, 0.031141868512110725, 0.020761245674740483, 0.01903114186851211, 0.01903114186851211, 0.015570934256055362, 0.01730103806228374, 0.01730103806228374, 0.015570934256055362, 0.015570934256055362, 0.015570934256055362, 0.015570934256055362, 0.015570934256055362, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.02249134948096886, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02768166089965398, 0.856401384083045, 0.8546712802768166, 0.0328719723183391, 0.029411764705882353, 0.0328719723183391, 0.03460207612456748, 0.03460207612456748, 0.03633217993079585, 0.03806228373702422, 0.03806228373702422, 0.03806228373702422, 0.04498269896193772, 0.06747404844290658, 0.1643598615916955], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rubis-subs-bind.gap.json b/pfam_gap_rates/Rubis-subs-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b432a1eafe8d85aa8af0b22eb254af9cf79c8a7
--- /dev/null
+++ b/pfam_gap_rates/Rubis-subs-bind.gap.json
@@ -0,0 +1 @@
+{"family": "Rubis-subs-bind", "n_seqs": 689, "length": 175, "gap_rates": [0.8853410740203193, 0.6110304789550073, 0.5341074020319303, 0.5065312046444121, 0.4818577648766328, 0.45573294629898403, 0.4107402031930334, 0.3802612481857765, 0.36284470246734396, 0.3497822931785196, 0.3454281567489115, 0.33381712626995647, 0.32946298984034833, 0.3265602322206096, 0.35268505079825835, 0.33962264150943394, 0.3352685050798258, 0.3309143686502177, 0.8853410740203193, 0.9274310595065312, 0.9448476052249637, 0.9288824383164006, 0.895500725689405, 0.8171262699564587, 0.32801161103047893, 0.3570391872278665, 0.3468795355587808, 0.33381712626995647, 0.397677793904209, 0.33962264150943394, 0.3149492017416546, 0.3076923076923077, 0.32220609579100146, 0.3193033381712627, 0.397677793904209, 0.6952104499274311, 0.8345428156748912, 0.8824383164005806, 0.9274310595065312, 0.9448476052249637, 0.9317851959361393, 0.9143686502177069, 0.8766328011611031, 0.8055152394775036, 0.5892597968069666, 0.1799709724238026, 0.16690856313497823, 0.1567489114658926, 0.15529753265602322, 0.15384615384615385, 0.1509433962264151, 0.14804063860667635, 0.14513788098693758, 0.14368650217706821, 0.14223512336719885, 0.14223512336719885, 0.1378809869375907, 0.1378809869375907, 0.1378809869375907, 0.1378809869375907, 0.1378809869375907, 0.5341074020319303, 0.6415094339622641, 0.5878084179970973, 0.15529753265602322, 0.14078374455732948, 0.13497822931785197, 0.13497822931785197, 0.1320754716981132, 0.1320754716981132, 0.12917271407837447, 0.13062409288824384, 0.12772133526850507, 0.12772133526850507, 0.17851959361393324, 0.28737300435413643, 0.3991291727140784, 0.47750362844702465, 0.5268505079825835, 0.4949201741654572, 0.7213352685050798, 0.8011611030478955, 0.8548621190130624, 0.93033381712627, 0.9390420899854862, 0.8679245283018868, 0.8330914368650217, 0.7460087082728593, 0.6632801161103048, 0.42525399129172714, 0.1683599419448476, 0.13642960812772134, 0.11901306240928883, 0.11611030478955008, 0.11756168359941944, 0.09724238026124818, 0.08563134978229318, 0.06531204644412192, 0.9274310595065312, 0.12191582002902758, 0.047895500725689405, 0.036284470246734396, 0.030478955007256895, 0.026124818577648767, 0.020319303338171262, 0.013062409288824383, 0.010159651669085631, 0.010159651669085631, 0.010159651669085631, 0.010159651669085631, 0.010159651669085631, 0.011611030478955007, 0.011611030478955007, 0.011611030478955007, 0.011611030478955007, 0.011611030478955007, 0.02177068214804064, 0.026124818577648767, 0.03193033381712627, 0.040638606676342524, 0.04354136429608128, 0.04644412191582003, 0.06821480406386067, 0.07256894049346879, 0.13352685050798258, 0.09869375907111756, 0.09288824383164006, 0.0899854862119013, 0.0783744557329463, 0.08708272859216255, 0.0899854862119013, 0.10014513788098693, 0.10885341074020319, 0.11465892597968069, 0.13642960812772134, 0.2539912917271408, 0.5631349782293179, 0.5007256894049347, 0.7198838896952104, 0.7968069666182874, 0.841799709724238, 0.8693759071117562, 0.9071117561683599, 0.9216255442670537, 0.93033381712627, 0.9346879535558781, 0.9462989840348331, 0.9477503628447025, 0.9492017416545718, 0.9462989840348331, 0.9390420899854862, 0.9317851959361393, 0.9216255442670537, 0.918722786647315, 0.8896952104499274, 0.8606676342525399, 0.8200290275761973, 0.7779390420899854, 0.6763425253991292, 0.11611030478955008, 0.13352685050798258, 0.11756168359941944, 0.11756168359941944, 0.11756168359941944, 0.11756168359941944, 0.11756168359941944, 0.11901306240928883, 0.1204644412191582, 0.1204644412191582, 0.12336719883889695, 0.1262699564586357, 0.12772133526850507, 0.18142235123367198, 0.22931785195936139, 0.32365747460087085], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RuvA_C.gap.json b/pfam_gap_rates/RuvA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33688583ca4aaf11d545bcb2bd5b8f30fb90abb4
--- /dev/null
+++ b/pfam_gap_rates/RuvA_C.gap.json
@@ -0,0 +1 @@
+{"family": "RuvA_C", "n_seqs": 1923, "length": 53, "gap_rates": [0.9427977119084764, 0.5423816952678107, 0.2709308372334893, 0.12480499219968799, 0.053562142485699425, 0.0202808112324493, 0.0124804992199688, 0.0093603744149766, 0.007280291211648466, 0.0031201248049922, 0.0026001040041601664, 0.0005200208008320333, 0.0005200208008320333, 0.0005200208008320333, 0.0005200208008320333, 0.0005200208008320333, 0.0005200208008320333, 0.0005200208008320333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.20384815392615704, 0.43733749349974, 0.7763910556422257, 0.9308372334893396, 0.5881435257410297, 0.031721268850754034, 0.026001040041601663, 0.022880915236609463, 0.0218408736349454, 0.0046801872074883, 0.9375975039001561, 0.9495579823192928, 0.8928757150286012, 0.0062402496099844, 0.006760270410816433, 0.0062402496099844, 0.007280291211648466, 0.0078003120124804995, 0.008320332813312533, 0.010400416016640665, 0.010400416016640665, 0.0124804992199688, 0.022880915236609463, 0.09308372334893396, 0.1892875715028601, 0.748829953198128], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rxt3.gap.json b/pfam_gap_rates/Rxt3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85c37da843e08625b214915093abaf54f628a928
--- /dev/null
+++ b/pfam_gap_rates/Rxt3.gap.json
@@ -0,0 +1 @@
+{"family": "Rxt3", "n_seqs": 154, "length": 149, "gap_rates": [0.3051948051948052, 0.18181818181818182, 0.16883116883116883, 0.16883116883116883, 0.16233766233766234, 0.14935064935064934, 0.14935064935064934, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.14285714285714285, 0.24025974025974026, 0.2662337662337662, 0.8701298701298701, 0.9090909090909091, 0.9415584415584416, 0.8831168831168831, 0.8701298701298701, 0.2922077922077922, 0.23376623376623376, 0.045454545454545456, 0.01948051948051948, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.3246753246753247, 0.44805194805194803, 0.44155844155844154, 0.42207792207792205, 0.4155844155844156, 0.4025974025974026, 0.42207792207792205, 0.42857142857142855, 0.44805194805194803, 0.44805194805194803, 0.5064935064935064, 0.512987012987013, 0.5194805194805194, 0.512987012987013, 0.5, 0.8051948051948052, 0.8181818181818182, 0.8636363636363636, 0.8961038961038961, 0.9025974025974026, 0.922077922077922, 0.948051948051948, 0.9415584415584416, 0.9155844155844156, 0.9025974025974026, 0.8896103896103896, 0.8376623376623377, 0.8051948051948052, 0.8051948051948052, 0.5194805194805194, 0.5324675324675324, 0.5454545454545454, 0.538961038961039, 0.5194805194805194, 0.5, 0.5194805194805194, 0.5194805194805194, 0.5064935064935064, 0.6038961038961039, 0.577922077922078, 0.512987012987013, 0.4935064935064935, 0.4805194805194805, 0.4675324675324675, 0.44155844155844154, 0.4155844155844156, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.4025974025974026, 0.4090909090909091, 0.4090909090909091, 0.4090909090909091, 0.4025974025974026, 0.4025974025974026, 0.4025974025974026, 0.4025974025974026, 0.4025974025974026, 0.4025974025974026, 0.3961038961038961, 0.9285714285714286, 0.9415584415584416, 0.9285714285714286, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.3961038961038961, 0.4090909090909091, 0.42207792207792205], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S-methyl_trans.gap.json b/pfam_gap_rates/S-methyl_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3bda45019810c239076e1a0fb4764dc80aa6e0d
--- /dev/null
+++ b/pfam_gap_rates/S-methyl_trans.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/S10_plectin.gap.json b/pfam_gap_rates/S10_plectin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..914e6a1454d5d0e11c6a9689b69a2e25037b6178
--- /dev/null
+++ b/pfam_gap_rates/S10_plectin.gap.json
@@ -0,0 +1 @@
+{"family": "S10_plectin", "n_seqs": 429, "length": 96, "gap_rates": [0.11421911421911422, 0.08857808857808858, 0.07925407925407925, 0.06993006993006994, 0.06526806526806526, 0.06526806526806526, 0.06526806526806526, 0.06060606060606061, 0.055944055944055944, 0.053613053613053616, 0.053613053613053616, 0.055944055944055944, 0.05128205128205128, 0.04895104895104895, 0.04428904428904429, 0.04195804195804196, 0.03496503496503497, 0.03496503496503497, 0.03263403263403263, 0.03263403263403263, 0.03263403263403263, 0.03263403263403263, 0.04895104895104895, 0.037296037296037296, 0.030303030303030304, 0.030303030303030304, 0.9393939393939394, 0.09324009324009325, 0.037296037296037296, 0.02564102564102564, 0.02564102564102564, 0.027972027972027972, 0.030303030303030304, 0.023310023310023312, 0.655011655011655, 0.8834498834498834, 0.8787878787878788, 0.027972027972027972, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.023310023310023312, 0.023310023310023312, 0.02564102564102564, 0.027972027972027972, 0.030303030303030304, 0.030303030303030304, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.02097902097902098, 0.02097902097902098, 0.023310023310023312, 0.023310023310023312, 0.023310023310023312, 0.023310023310023312, 0.023310023310023312, 0.023310023310023312, 0.023310023310023312, 0.023310023310023312, 0.027972027972027972, 0.02564102564102564, 0.027972027972027972, 0.027972027972027972, 0.02564102564102564, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.027972027972027972, 0.030303030303030304, 0.037296037296037296, 0.037296037296037296, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.046620046620046623, 0.046620046620046623, 0.05128205128205128, 0.05128205128205128, 0.053613053613053616, 0.053613053613053616, 0.055944055944055944, 0.07226107226107226, 0.08624708624708624, 0.2261072261072261], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAND.gap.json b/pfam_gap_rates/SAND.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..733730665989c1defec4937cec301e2438989fc1
--- /dev/null
+++ b/pfam_gap_rates/SAND.gap.json
@@ -0,0 +1 @@
+{"family": "SAND", "n_seqs": 236, "length": 85, "gap_rates": [0.8983050847457628, 0.7245762711864406, 0.5338983050847458, 0.3050847457627119, 0.2288135593220339, 0.19915254237288135, 0.19491525423728814, 0.1906779661016949, 0.1906779661016949, 0.1864406779661017, 0.17372881355932204, 0.1694915254237288, 0.1694915254237288, 0.1694915254237288, 0.1694915254237288, 0.1652542372881356, 0.16101694915254236, 0.1483050847457627, 0.1483050847457627, 0.13983050847457626, 0.13983050847457626, 0.13983050847457626, 0.13559322033898305, 0.13135593220338984, 0.711864406779661, 0.17796610169491525, 0.1271186440677966, 0.046610169491525424, 0.046610169491525424, 0.046610169491525424, 0.046610169491525424, 0.046610169491525424, 0.03389830508474576, 0.029661016949152543, 0.025423728813559324, 0.025423728813559324, 0.6694915254237288, 0.940677966101695, 0.8940677966101694, 0.01694915254237288, 0.012711864406779662, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.012711864406779662, 0.012711864406779662, 0.0211864406779661, 0.0211864406779661, 0.029661016949152543, 0.029661016949152543, 0.025423728813559324, 0.029661016949152543, 0.03389830508474576, 0.046610169491525424, 0.046610169491525424, 0.046610169491525424, 0.046610169491525424, 0.046610169491525424, 0.05084745762711865, 0.05508474576271186, 0.05508474576271186, 0.9152542372881356, 0.9322033898305084, 0.9491525423728814, 0.940677966101695, 0.9279661016949152, 0.9152542372881356, 0.15254237288135594, 0.17796610169491525, 0.18220338983050846, 0.1864406779661017, 0.19915254237288135, 0.2076271186440678, 0.211864406779661, 0.2245762711864407, 0.2288135593220339, 0.2542372881355932, 0.288135593220339, 0.3220338983050847, 0.3686440677966102, 0.4915254237288136], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SASA.gap.json b/pfam_gap_rates/SASA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d50f5d15b624ffe317556d565899f175390ed6dc
--- /dev/null
+++ b/pfam_gap_rates/SASA.gap.json
@@ -0,0 +1 @@
+{"family": "SASA", "n_seqs": 1134, "length": 332, "gap_rates": [0.6596119929453262, 0.3985890652557319, 0.38271604938271603, 0.37037037037037035, 0.35978835978835977, 0.35361552028218696, 0.3527336860670194, 0.35185185185185186, 0.3509700176366843, 0.3509700176366843, 0.3509700176366843, 0.3395061728395062, 0.3403880070546737, 0.3395061728395062, 0.9347442680776014, 0.35890652557319225, 0.3544973544973545, 0.3509700176366843, 0.3544973544973545, 0.36243386243386244, 0.38095238095238093, 0.7142857142857143, 0.8500881834215167, 0.9021164021164021, 0.937389770723104, 0.9435626102292769, 0.9188712522045855, 0.8703703703703703, 0.7645502645502645, 0.671957671957672, 0.5317460317460317, 0.5211640211640212, 0.48500881834215165, 0.43915343915343913, 0.42416225749559083, 0.37918871252204583, 0.36507936507936506, 0.35802469135802467, 0.35890652557319225, 0.35537918871252205, 0.3562610229276896, 0.35537918871252205, 0.8721340388007055, 0.345679012345679, 0.3447971781305115, 0.3474426807760141, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SBP_bac_5.gap.json b/pfam_gap_rates/SBP_bac_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72d413ab9da8c40abc4e208efe5caf9227e94801
--- /dev/null
+++ b/pfam_gap_rates/SBP_bac_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SE.gap.json b/pfam_gap_rates/SE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf3c3b1355784c48329788726329ae7e8ac90281
--- /dev/null
+++ b/pfam_gap_rates/SE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SERTA.gap.json b/pfam_gap_rates/SERTA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b3fba56b9e2bb9446abe2d7668c6a4db1bf909f
--- /dev/null
+++ b/pfam_gap_rates/SERTA.gap.json
@@ -0,0 +1 @@
+{"family": "SERTA", "n_seqs": 137, "length": 36, "gap_rates": [0.06569343065693431, 0.029197080291970802, 0.029197080291970802, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.36496350364963503, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0364963503649635, 0.0364963503649635, 0.043795620437956206, 0.19708029197080293], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SGT1.gap.json b/pfam_gap_rates/SGT1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d17acba8f753de2d42a28696c70a3ab2d2aa6c90
--- /dev/null
+++ b/pfam_gap_rates/SGT1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SH3_2.gap.json b/pfam_gap_rates/SH3_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0792365f003c3182f67cb10b4b829abd543de58
--- /dev/null
+++ b/pfam_gap_rates/SH3_2.gap.json
@@ -0,0 +1 @@
+{"family": "SH3_2", "n_seqs": 2205, "length": 86, "gap_rates": [0.6099773242630385, 0.2503401360544218, 0.1836734693877551, 0.14331065759637188, 0.1306122448979592, 0.12154195011337869, 0.09523809523809523, 0.08979591836734693, 0.07029478458049887, 0.061224489795918366, 0.9315192743764172, 0.8884353741496599, 0.07029478458049887, 0.05215419501133787, 0.049886621315192746, 0.04036281179138322, 0.016780045351473923, 0.6639455782312925, 0.710204081632653, 0.7700680272108843, 0.9478458049886621, 0.7904761904761904, 0.7310657596371882, 0.6988662131519274, 0.6394557823129252, 0.013605442176870748, 0.013151927437641724, 0.012698412698412698, 0.011337868480725623, 0.009070294784580499, 0.0058956916099773245, 0.0058956916099773245, 0.022675736961451247, 0.007709750566893424, 0.006802721088435374, 0.005442176870748299, 0.020861678004535148, 0.9061224489795918, 0.9333333333333333, 0.9224489795918367, 0.8861678004535147, 0.7247165532879819, 0.15328798185941042, 0.04081632653061224, 0.01904761904761905, 0.018140589569160998, 0.0045351473922902496, 0.8517006802721089, 0.9319727891156463, 0.945124716553288, 0.8784580498866214, 0.78140589569161, 0.0018140589569160999, 0.0022675736961451248, 0.9170068027210885, 0.0022675736961451248, 0.0022675736961451248, 0.0027210884353741495, 0.0045351473922902496, 0.0072562358276643995, 0.818140589569161, 0.9142857142857143, 0.6081632653061224, 0.016780045351473923, 0.9297052154195011, 0.9473922902494331, 0.9297052154195011, 0.017687074829931974, 0.017687074829931974, 0.012244897959183673, 0.819047619047619, 0.8888888888888888, 0.9333333333333333, 0.8448979591836735, 0.8108843537414966, 0.013151927437641724, 0.013605442176870748, 0.015419501133786848, 0.01904761904761905, 0.023582766439909298, 0.04217687074829932, 0.08027210884353742, 0.12562358276643992, 0.20680272108843537, 0.39365079365079364, 0.7773242630385487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SH3_4.gap.json b/pfam_gap_rates/SH3_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37adb793de45c4cd56764beb95c65979fa65f73f
--- /dev/null
+++ b/pfam_gap_rates/SH3_4.gap.json
@@ -0,0 +1 @@
+{"family": "SH3_4", "n_seqs": 700, "length": 58, "gap_rates": [0.7842857142857143, 0.6014285714285714, 0.36, 0.23714285714285716, 0.17, 0.12571428571428572, 0.06, 0.05714285714285714, 0.041428571428571426, 0.03428571428571429, 0.032857142857142856, 0.025714285714285714, 0.022857142857142857, 0.02, 0.017142857142857144, 0.014285714285714285, 0.014285714285714285, 0.012857142857142857, 0.6957142857142857, 0.008571428571428572, 0.007142857142857143, 0.004285714285714286, 0.004285714285714286, 0.004285714285714286, 0.004285714285714286, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.0014285714285714286, 0.002857142857142857, 0.0, 0.9328571428571428, 0.0014285714285714286, 0.0014285714285714286, 0.0, 0.005714285714285714, 0.0014285714285714286, 0.0, 0.0, 0.0, 0.0014285714285714286, 0.0014285714285714286, 0.36142857142857143, 0.01, 0.011428571428571429, 0.012857142857142857, 0.007142857142857143, 0.004285714285714286, 0.005714285714285714, 0.004285714285714286, 0.01, 0.02, 0.032857142857142856, 0.054285714285714284, 0.09, 0.11714285714285715, 0.26142857142857145, 0.4471428571428571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SH3_6.gap.json b/pfam_gap_rates/SH3_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6277feaa07f2ff7cc9fb996732d524645122e099
--- /dev/null
+++ b/pfam_gap_rates/SH3_6.gap.json
@@ -0,0 +1 @@
+{"family": "SH3_6", "n_seqs": 112, "length": 53, "gap_rates": [0.5446428571428571, 0.4107142857142857, 0.33035714285714285, 0.3125, 0.3125, 0.29464285714285715, 0.49107142857142855, 0.45535714285714285, 0.4017857142857143, 0.375, 0.10714285714285714, 0.08035714285714286, 0.07142857142857142, 0.05357142857142857, 0.044642857142857144, 0.017857142857142856, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.05357142857142857, 0.17857142857142858], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SHNi-TPR.gap.json b/pfam_gap_rates/SHNi-TPR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aea299bf9c19082220571d387c3827268c2897ed
--- /dev/null
+++ b/pfam_gap_rates/SHNi-TPR.gap.json
@@ -0,0 +1 @@
+{"family": "SHNi-TPR", "n_seqs": 247, "length": 38, "gap_rates": [0.23481781376518218, 0.12550607287449392, 0.06477732793522267, 0.04048582995951417, 0.032388663967611336, 0.032388663967611336, 0.032388663967611336, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.012145748987854251, 0.008097165991902834, 0.008097165991902834, 0.004048582995951417, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004048582995951417, 0.004048582995951417, 0.004048582995951417, 0.016194331983805668, 0.024291497975708502, 0.05263157894736842, 0.0728744939271255, 0.09716599190283401, 0.10931174089068826, 0.12955465587044535, 0.1700404858299595, 0.20242914979757085, 0.38461538461538464, 0.6194331983805668], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SKIP_SNW.gap.json b/pfam_gap_rates/SKIP_SNW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96bb035dbd17138a43784bf79963ead437b77dfc
--- /dev/null
+++ b/pfam_gap_rates/SKIP_SNW.gap.json
@@ -0,0 +1 @@
+{"family": "SKIP_SNW", "n_seqs": 347, "length": 162, "gap_rates": [0.3256484149855908, 0.12680115273775217, 0.1239193083573487, 0.11815561959654179, 0.11527377521613832, 0.11239193083573487, 0.10951008645533142, 0.10951008645533142, 0.8731988472622478, 0.30835734870317005, 0.22478386167146974, 0.15561959654178675, 0.138328530259366, 0.5763688760806917, 0.11527377521613832, 0.09798270893371758, 0.09221902017291066, 0.08645533141210375, 0.08645533141210375, 0.08357348703170028, 0.08357348703170028, 0.08357348703170028, 0.08357348703170028, 0.08357348703170028, 0.08357348703170028, 0.07492795389048991, 0.07492795389048991, 0.07204610951008646, 0.07204610951008646, 0.06628242074927954, 0.06628242074927954, 0.06628242074927954, 0.06628242074927954, 0.06051873198847262, 0.06051873198847262, 0.06051873198847262, 0.06051873198847262, 0.06051873198847262, 0.06051873198847262, 0.05763688760806916, 0.7319884726224783, 0.05763688760806916, 0.05763688760806916, 0.05763688760806916, 0.06051873198847262, 0.05475504322766571, 0.05763688760806916, 0.06051873198847262, 0.06340057636887608, 0.06340057636887608, 0.06628242074927954, 0.05763688760806916, 0.05763688760806916, 0.05763688760806916, 0.05763688760806916, 0.05763688760806916, 0.05763688760806916, 0.05475504322766571, 0.05475504322766571, 0.05475504322766571, 0.05475504322766571, 0.05475504322766571, 0.04899135446685879, 0.04610951008645533, 0.043227665706051875, 0.043227665706051875, 0.04610951008645533, 0.043227665706051875, 0.0345821325648415, 0.0345821325648415, 0.0345821325648415, 0.0345821325648415, 0.03170028818443804, 0.03170028818443804, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.025936599423631124, 0.025936599423631124, 0.01729106628242075, 0.01729106628242075, 0.025936599423631124, 0.02881844380403458, 0.02881844380403458, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.0345821325648415, 0.03170028818443804, 0.025936599423631124, 0.02881844380403458, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.0345821325648415, 0.0345821325648415, 0.0345821325648415, 0.0345821325648415, 0.0345821325648415, 0.0345821325648415, 0.037463976945244955, 0.040345821325648415, 0.043227665706051875, 0.04899135446685879, 0.04899135446685879, 0.04899135446685879, 0.04899135446685879, 0.05187319884726225, 0.05187319884726225, 0.04899135446685879, 0.05187319884726225, 0.05187319884726225, 0.05475504322766571, 0.05475504322766571, 0.05475504322766571, 0.05475504322766571, 0.05187319884726225, 0.05187319884726225, 0.05187319884726225, 0.05187319884726225, 0.05187319884726225, 0.05763688760806916, 0.05475504322766571, 0.05475504322766571, 0.05475504322766571, 0.05475504322766571, 0.05187319884726225, 0.05475504322766571, 0.05475504322766571, 0.05763688760806916, 0.05763688760806916, 0.06051873198847262, 0.06051873198847262, 0.06628242074927954, 0.06628242074927954, 0.07204610951008646, 0.10086455331412104, 0.15273775216138327], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SM-ATX.gap.json b/pfam_gap_rates/SM-ATX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aaebbbb808c0a4d65bc549da2655faf75e197c0e
--- /dev/null
+++ b/pfam_gap_rates/SM-ATX.gap.json
@@ -0,0 +1 @@
+{"family": "SM-ATX", "n_seqs": 242, "length": 96, "gap_rates": [0.45041322314049587, 0.17768595041322313, 0.10743801652892562, 0.0743801652892562, 0.06198347107438017, 0.05371900826446281, 0.05371900826446281, 0.049586776859504134, 0.0371900826446281, 0.028925619834710745, 0.01652892561983471, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8305785123966942, 0.9173553719008265, 0.9421487603305785, 0.9338842975206612, 0.8801652892561983, 0.6818181818181818, 0.36363636363636365, 0.3181818181818182, 0.012396694214876033, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.6900826446280992, 0.8057851239669421, 0.9008264462809917, 0.8842975206611571, 0.7603305785123967, 0.6528925619834711, 0.4834710743801653, 0.35537190082644626, 0.17768595041322313, 0.9421487603305785, 0.9173553719008265, 0.1322314049586777, 0.08677685950413223, 0.05371900826446281, 0.049586776859504134, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.04132231404958678, 0.04132231404958678, 0.05371900826446281, 0.049586776859504134, 0.049586776859504134, 0.8842975206611571, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.0371900826446281, 0.05785123966942149, 0.14049586776859505, 0.5495867768595041], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SNase.gap.json b/pfam_gap_rates/SNase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b99572589e5281dd4975e49b698c2df75463a556
--- /dev/null
+++ b/pfam_gap_rates/SNase.gap.json
@@ -0,0 +1 @@
+{"family": "SNase", "n_seqs": 2878, "length": 136, "gap_rates": [0.5847810979847116, 0.2550382209867964, 0.20152883947185546, 0.17303683113273105, 0.16087560806115359, 0.155316191799861, 0.1532314107018763, 0.15010423905489922, 0.14558721334259903, 0.14107018763029883, 0.14072272411396802, 0.1393328700486449, 0.1369006254343294, 0.36448922863099376, 0.3610145934676859, 0.35267546907574704, 0.32175121612230717, 0.7293259207783183, 0.8022932592077832, 0.8662265462126477, 0.9305072967338429, 0.9478804725503822, 0.9360667129951356, 0.9176511466296039, 0.8432939541348159, 0.7668519805420431, 0.6525364836692147, 0.3273106323835997, 0.2918693537178596, 0.07991660875608061, 0.07123002084781098, 0.0660180681028492, 0.06045865184155664, 0.05211952744961779, 0.045170257123002086, 0.04343293954134816, 0.0423905489923558, 0.04100069492703266, 0.03891591382904795, 0.037873523280055596, 0.037873523280055596, 0.037526059763724806, 0.037526059763724806, 0.03613620569840167, 0.035788742182070885, 0.10945100764419737, 0.03995830437804031, 0.03509381514940931, 0.03613620569840167, 0.035788742182070885, 0.03613620569840167, 0.035788742182070885, 0.03370396108408617, 0.031966643502432245, 0.03161917998610146, 0.03266157053509382, 0.8095899930507297, 0.8790826963168867, 0.6966643502432245, 0.5747046560111189, 0.5045170257123002, 0.06914523974982627, 0.03022932592077832, 0.026059763724808897, 0.022585128561501043, 0.023280055594162612, 0.022585128561501043, 0.020847810979847115, 0.020152883947185545, 0.02050034746351633, 0.01980542043085476, 0.019457956914523976, 0.01911049339819319, 0.01250868658790827, 0.7001389854065323, 0.7609451007644198, 0.8783877692842251, 0.9266851980542044, 0.9412786657400973, 0.9499652536483669, 0.9315496872828353, 0.9037526059763725, 0.8419041000694927, 0.7446143154968728, 0.5312717164697707, 0.010076441973592773, 0.009728978457261988, 0.009034051424600417, 0.009034051424600417, 0.008686587908269632, 0.009034051424600417, 0.009034051424600417, 0.008339124391938846, 0.009381514940931202, 0.010423905489923557, 0.010771369006254344, 0.011466296038915913, 0.012161223071577484, 0.01320361362056984, 0.014940931202223767, 0.12300208478109799, 0.0684503127171647, 0.09381514940931203, 0.8366921473245309, 0.1556636553161918, 0.1063238359972203, 0.10597637248088951, 0.27206393328700484, 0.8120222376650452, 0.9027102154273802, 0.6831132731063239, 0.2387074357192495, 0.19735927727588604, 0.18207088255733148, 0.11640027797081307, 0.10840861709520501, 0.09068797776233495, 0.08582348853370396, 0.08617095205003475, 0.08686587908269632, 0.08790826963168867, 0.08895066018068103, 0.09034051424600417, 0.09103544127866574, 0.0920778318276581, 0.09312022237665045, 0.0941626129256428, 0.09728978457261987, 0.09833217512161223, 0.09867963863794302, 0.10041695621959694, 0.10180681028492009, 0.11501042390548992, 0.18693537178596248, 0.278318276580959, 0.7939541348158443], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SOR_SNZ.gap.json b/pfam_gap_rates/SOR_SNZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e183c5446641d6b67eef793daf790bcdde0d1309
--- /dev/null
+++ b/pfam_gap_rates/SOR_SNZ.gap.json
@@ -0,0 +1 @@
+{"family": "SOR_SNZ", "n_seqs": 995, "length": 208, "gap_rates": [0.47537688442211057, 0.13266331658291458, 0.09447236180904522, 0.08542713567839195, 0.08040201005025126, 0.07135678391959799, 0.06733668341708543, 0.06532663316582915, 0.06331658291457286, 0.04824120603015075, 0.04824120603015075, 0.04623115577889447, 0.04623115577889447, 0.04623115577889447, 0.04623115577889447, 0.04623115577889447, 0.04321608040201005, 0.04321608040201005, 0.04321608040201005, 0.04321608040201005, 0.04221105527638191, 0.04221105527638191, 0.04221105527638191, 0.04221105527638191, 0.04221105527638191, 0.04321608040201005, 0.04321608040201005, 0.04221105527638191, 0.04221105527638191, 0.04221105527638191, 0.04120603015075377, 0.04120603015075377, 0.04020100502512563, 0.04020100502512563, 0.04020100502512563, 0.04020100502512563, 0.0371859296482412, 0.03819095477386935, 0.04020100502512563, 0.04020100502512563, 0.04824120603015075, 0.04723618090452261, 0.044221105527638194, 0.04723618090452261, 0.04824120603015075, 0.04824120603015075, 0.04522613065326633, 0.044221105527638194, 0.04221105527638191, 0.04321608040201005, 0.04120603015075377, 0.04120603015075377, 0.03919597989949749, 0.03919597989949749, 0.035175879396984924, 0.036180904522613064, 0.036180904522613064, 0.036180904522613064, 0.0371859296482412, 0.036180904522613064, 0.036180904522613064, 0.036180904522613064, 0.036180904522613064, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.03919597989949749, 0.036180904522613064, 0.036180904522613064, 0.036180904522613064, 0.034170854271356785, 0.036180904522613064, 0.036180904522613064, 0.035175879396984924, 0.035175879396984924, 0.034170854271356785, 0.034170854271356785, 0.034170854271356785, 0.033165829145728645, 0.033165829145728645, 0.034170854271356785, 0.034170854271356785, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.034170854271356785, 0.036180904522613064, 0.033165829145728645, 0.034170854271356785, 0.034170854271356785, 0.036180904522613064, 0.036180904522613064, 0.0371859296482412, 0.04020100502512563, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.036180904522613064, 0.036180904522613064, 0.036180904522613064, 0.036180904522613064, 0.036180904522613064, 0.0371859296482412, 0.0371859296482412, 0.0371859296482412, 0.03819095477386935, 0.03819095477386935, 0.04020100502512563, 0.0371859296482412, 0.0371859296482412, 0.03819095477386935, 0.03819095477386935, 0.0371859296482412, 0.0371859296482412, 0.0371859296482412, 0.0371859296482412, 0.03819095477386935, 0.03919597989949749, 0.03919597989949749, 0.03919597989949749, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.03819095477386935, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.032160804020100506, 0.033165829145728645, 0.034170854271356785, 0.033165829145728645, 0.034170854271356785, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.032160804020100506, 0.032160804020100506, 0.032160804020100506, 0.031155778894472363, 0.031155778894472363, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.02914572864321608, 0.02814070351758794, 0.02814070351758794, 0.02814070351758794, 0.02814070351758794, 0.02914572864321608, 0.02914572864321608, 0.02914572864321608, 0.02914572864321608, 0.9457286432160804, 0.9376884422110553, 0.02914572864321608, 0.031155778894472363, 0.031155778894472363, 0.02914572864321608, 0.02914572864321608, 0.02914572864321608, 0.02914572864321608, 0.02914572864321608, 0.02914572864321608, 0.02914572864321608, 0.02914572864321608, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.03015075376884422, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.033165829145728645, 0.034170854271356785, 0.034170854271356785, 0.036180904522613064, 0.036180904522613064, 0.03819095477386935, 0.03919597989949749, 0.04020100502512563, 0.04020100502512563, 0.04321608040201005, 0.04623115577889447, 0.05025125628140704, 0.05025125628140704, 0.053266331658291456, 0.0592964824120603], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPA.gap.json b/pfam_gap_rates/SPA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0eabcaa2b9019ccb58cc8c9a207cc156ec688a74
--- /dev/null
+++ b/pfam_gap_rates/SPA.gap.json
@@ -0,0 +1 @@
+{"family": "SPA", "n_seqs": 378, "length": 132, "gap_rates": [0.6666666666666666, 0.5608465608465608, 0.3412698412698413, 0.2857142857142857, 0.24074074074074073, 0.20899470899470898, 0.17724867724867724, 0.15608465608465608, 0.13756613756613756, 0.10317460317460317, 0.08465608465608465, 0.06613756613756613, 0.05555555555555555, 0.047619047619047616, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.04497354497354497, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.031746031746031744, 0.031746031746031744, 0.0291005291005291, 0.0291005291005291, 0.0291005291005291, 0.0291005291005291, 0.026455026455026454, 0.026455026455026454, 0.026455026455026454, 0.0291005291005291, 0.0291005291005291, 0.0291005291005291, 0.0291005291005291, 0.0291005291005291, 0.031746031746031744, 0.5740740740740741, 0.5634920634920635, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.013227513227513227, 0.013227513227513227, 0.013227513227513227, 0.17989417989417988, 0.8703703703703703, 0.8518518518518519, 0.701058201058201, 0.30423280423280424, 0.29894179894179895, 0.2777777777777778, 0.16666666666666666, 0.15343915343915343, 0.1402116402116402, 0.2751322751322751, 0.36243386243386244, 0.2777777777777778, 0.25925925925925924, 0.17724867724867724, 0.9338624338624338, 0.9126984126984127, 0.015873015873015872, 0.013227513227513227, 0.013227513227513227, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.013227513227513227, 0.6137566137566137, 0.7407407407407407, 0.7751322751322751, 0.7671957671957672, 0.7222222222222222, 0.6137566137566137, 0.11375661375661375, 0.082010582010582, 0.031746031746031744, 0.026455026455026454, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.03439153439153439, 0.015873015873015872, 0.7857142857142857, 0.798941798941799, 0.8148148148148148, 0.9285714285714286, 0.9417989417989417, 0.8386243386243386, 0.8068783068783069, 0.791005291005291, 0.783068783068783, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.037037037037037035, 0.0291005291005291, 0.026455026455026454, 0.03439153439153439, 0.037037037037037035, 0.09259259259259259, 0.037037037037037035, 0.03968253968253968, 0.047619047619047616, 0.05291005291005291, 0.05291005291005291, 0.0582010582010582, 0.06613756613756613, 0.08994708994708994, 0.15343915343915343, 0.2751322751322751, 0.3439153439153439, 0.42063492063492064, 0.4523809523809524, 0.4708994708994709, 0.5185185185185185, 0.9206349206349206], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRP-alpha_N.gap.json b/pfam_gap_rates/SRP-alpha_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99247ab90a292e19caa79cad36212d40b2acda41
--- /dev/null
+++ b/pfam_gap_rates/SRP-alpha_N.gap.json
@@ -0,0 +1 @@
+{"family": "SRP-alpha_N", "n_seqs": 313, "length": 384, "gap_rates": [0.5527156549520766, 0.28753993610223644, 0.19808306709265175, 0.1853035143769968, 0.16932907348242812, 0.16932907348242812, 0.16613418530351437, 0.1597444089456869, 0.16293929712460065, 0.16293929712460065, 0.16293929712460065, 0.1597444089456869, 0.1501597444089457, 0.14696485623003194, 0.14696485623003194, 0.23961661341853036, 0.25878594249201275, 0.2715654952076677, 0.7891373801916933, 0.8146964856230032, 0.8626198083067093, 0.8785942492012779, 0.8753993610223643, 0.8370607028753994, 0.792332268370607, 0.7859424920127795, 0.670926517571885, 0.6549520766773163, 0.6485623003194888, 0.6293929712460063, 0.16293929712460065, 0.21725239616613418, 0.13738019169329074, 0.13738019169329074, 0.13738019169329074, 0.13738019169329074, 0.8945686900958466, 0.8977635782747604, 0.8977635782747604, 0.8913738019169329, 0.134185303514377, 0.13099041533546327, 0.13099041533546327, 0.12779552715654952, 0.13099041533546327, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SSXT.gap.json b/pfam_gap_rates/SSXT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28d0dde4ccfafb0384db992feb77dfd98f7c9d1d
--- /dev/null
+++ b/pfam_gap_rates/SSXT.gap.json
@@ -0,0 +1 @@
+{"family": "SSXT", "n_seqs": 235, "length": 61, "gap_rates": [0.9404255319148936, 0.7021276595744681, 0.39148936170212767, 0.251063829787234, 0.225531914893617, 0.17446808510638298, 0.16595744680851063, 0.16170212765957448, 0.16170212765957448, 0.15319148936170213, 0.08936170212765958, 0.0425531914893617, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.029787234042553193, 0.029787234042553193, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.01702127659574468, 0.00851063829787234, 0.00851063829787234, 0.00425531914893617, 0.00851063829787234, 0.01276595744680851, 0.01276595744680851, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.02127659574468085, 0.02127659574468085, 0.03829787234042553, 0.03829787234042553, 0.03829787234042553, 0.0425531914893617, 0.04680851063829787, 0.04680851063829787, 0.07234042553191489, 0.1148936170212766, 0.25957446808510637, 0.4297872340425532, 0.574468085106383, 0.6468085106382979], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/STAG.gap.json b/pfam_gap_rates/STAG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb073cebe261714a6b9bc7be6407d3d3b652f66f
--- /dev/null
+++ b/pfam_gap_rates/STAG.gap.json
@@ -0,0 +1 @@
+{"family": "STAG", "n_seqs": 345, "length": 122, "gap_rates": [0.8724637681159421, 0.2608695652173913, 0.17681159420289855, 0.15942028985507245, 0.11884057971014493, 0.11014492753623188, 0.0927536231884058, 0.06956521739130435, 0.05217391304347826, 0.057971014492753624, 0.06086956521739131, 0.04927536231884058, 0.03768115942028986, 0.03188405797101449, 0.03188405797101449, 0.03188405797101449, 0.028985507246376812, 0.028985507246376812, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.020289855072463767, 0.020289855072463767, 0.020289855072463767, 0.020289855072463767, 0.020289855072463767, 0.020289855072463767, 0.5797101449275363, 0.028985507246376812, 0.028985507246376812, 0.02608695652173913, 0.02608695652173913, 0.028985507246376812, 0.02608695652173913, 0.9159420289855073, 0.936231884057971, 0.7333333333333333, 0.02318840579710145, 0.06956521739130435, 0.034782608695652174, 0.9391304347826087, 0.9449275362318841, 0.9449275362318841, 0.9420289855072463, 0.9333333333333333, 0.034782608695652174, 0.020289855072463767, 0.020289855072463767, 0.017391304347826087, 0.020289855072463767, 0.017391304347826087, 0.017391304347826087, 0.020289855072463767, 0.020289855072463767, 0.017391304347826087, 0.020289855072463767, 0.017391304347826087, 0.014492753623188406, 0.011594202898550725, 0.008695652173913044, 0.008695652173913044, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.011594202898550725, 0.011594202898550725, 0.011594202898550725, 0.011594202898550725, 0.011594202898550725, 0.011594202898550725, 0.011594202898550725, 0.005797101449275362, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.011594202898550725, 0.008695652173913044, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.02318840579710145, 0.028985507246376812, 0.034782608695652174, 0.04057971014492753, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.057971014492753624, 0.06086956521739131, 0.07536231884057971, 0.10144927536231885, 0.0927536231884058, 0.26666666666666666, 0.16521739130434782, 0.17681159420289855, 0.744927536231884, 0.7420289855072464, 0.2608695652173913, 0.26666666666666666, 0.2956521739130435, 0.3333333333333333, 0.4608695652173913, 0.5159420289855072, 0.6289855072463768, 0.7304347826086957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/START.gap.json b/pfam_gap_rates/START.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d674c2b19a771a81726eeb49c913b255972cdb27
--- /dev/null
+++ b/pfam_gap_rates/START.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/STAS_2.gap.json b/pfam_gap_rates/STAS_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f92aa873da016122fc92e18c731afdfbbfa21c7
--- /dev/null
+++ b/pfam_gap_rates/STAS_2.gap.json
@@ -0,0 +1 @@
+{"family": "STAS_2", "n_seqs": 1604, "length": 85, "gap_rates": [0.48192019950124687, 0.3634663341645885, 0.2082294264339152, 0.14962593516209477, 0.10037406483790523, 0.06920199501246883, 0.05423940149625935, 0.051745635910224436, 0.0442643391521197, 0.0399002493765586, 0.03740648379052369, 0.033042394014962596, 0.029301745635910224, 0.029301745635910224, 0.03054862842892768, 0.028678304239401497, 0.024314214463840397, 0.019326683291770574, 0.01683291770573566, 0.014962593516209476, 0.018703241895261846, 0.021820448877805487, 0.06109725685785536, 0.850997506234414, 0.9382793017456359, 0.7462593516209476, 0.03865336658354115, 0.05236907730673317, 0.035536159600997506, 0.9270573566084788, 0.6128428927680798, 0.15773067331670823, 0.008104738154613466, 0.0024937655860349127, 0.0006234413965087282, 0.0006234413965087282, 0.0, 0.0, 0.0, 0.0006234413965087282, 0.0, 0.0006234413965087282, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012468827930174563, 0.0018703241895261845, 0.0018703241895261845, 0.0006234413965087282, 0.0006234413965087282, 0.0006234413965087282, 0.0012468827930174563, 0.0012468827930174563, 0.0012468827930174563, 0.0012468827930174563, 0.029301745635910224, 0.03865336658354115, 0.09351620947630923, 0.05548628428927681, 0.046134663341645885, 0.04488778054862843, 0.022443890274314215, 0.014339152119700748, 0.015586034912718205, 0.014962593516209476, 0.016209476309226933, 0.02493765586034913, 0.028678304239401497, 0.04987531172069826, 0.03366583541147132, 0.034912718204488775, 0.04177057356608479, 0.043640897755610975, 0.046758104738154616, 0.051745635910224436, 0.05423940149625935, 0.05860349127182045, 0.07793017456359103, 0.10162094763092269, 0.1371571072319202, 0.192643391521197, 0.2718204488778055, 0.7275561097256857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SURF1.gap.json b/pfam_gap_rates/SURF1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..507c7d86f7c8736567669ea3dd69ae038fbf74c3
--- /dev/null
+++ b/pfam_gap_rates/SURF1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SUV3_C.gap.json b/pfam_gap_rates/SUV3_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..543634914bf88b1a0994b89e1f32af9b3234095a
--- /dev/null
+++ b/pfam_gap_rates/SUV3_C.gap.json
@@ -0,0 +1 @@
+{"family": "SUV3_C", "n_seqs": 407, "length": 49, "gap_rates": [0.1547911547911548, 0.11793611793611794, 0.044226044226044224, 0.0171990171990172, 0.004914004914004914, 0.002457002457002457, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002457002457002457, 0.002457002457002457, 0.0, 0.0, 0.007371007371007371, 0.0, 0.0, 0.8968058968058968, 0.09828009828009827, 0.0, 0.0, 0.004914004914004914, 0.004914004914004914, 0.004914004914004914, 0.012285012285012284, 0.0171990171990172, 0.022113022113022112, 0.02457002457002457, 0.029484029484029485, 0.029484029484029485, 0.03194103194103194, 0.03194103194103194, 0.0343980343980344, 0.04176904176904177, 0.044226044226044224, 0.044226044226044224, 0.051597051597051594, 0.06633906633906633, 0.07616707616707617, 0.12039312039312039, 0.29975429975429974, 0.8574938574938575], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SWI-SNF_Ssr4.gap.json b/pfam_gap_rates/SWI-SNF_Ssr4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82e922eddf16ee3b55fc69763c307fd4452ac98f
--- /dev/null
+++ b/pfam_gap_rates/SWI-SNF_Ssr4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SbcCD_C.gap.json b/pfam_gap_rates/SbcCD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..606dbb29693cf5b26df87fbabb290559321900f8
--- /dev/null
+++ b/pfam_gap_rates/SbcCD_C.gap.json
@@ -0,0 +1 @@
+{"family": "SbcCD_C", "n_seqs": 1342, "length": 91, "gap_rates": [0.7302533532041728, 0.6773472429210134, 0.6631892697466468, 0.6475409836065574, 0.6326378539493294, 0.5923994038748137, 0.5804769001490313, 0.5715350223546944, 0.5611028315946349, 0.5447093889716841, 0.5059612518628912, 0.4903129657228018, 0.47690014903129657, 0.46572280178837555, 0.4582712369597616, 0.44709388971684055, 0.8152011922503726, 0.5611028315946349, 0.496274217585693, 0.3897168405365127, 0.334575260804769, 0.3114754098360656, 0.37034277198211624, 0.4314456035767511, 0.36736214605067063, 0.8941877794336811, 0.29135618479880776, 0.043964232488822655, 0.011922503725782414, 0.005961251862891207, 0.0037257824143070045, 0.0022354694485842027, 0.0022354694485842027, 0.0022354694485842027, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.7004470938897168, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0007451564828614009, 0.0014903129657228018, 0.0014903129657228018, 0.19225037257824143, 0.3867362146050671, 0.38002980625931443, 0.856929955290611, 0.6810730253353204, 0.044709388971684055, 0.044709388971684055, 0.0037257824143070045, 0.0022354694485842027, 0.0014903129657228018, 0.0014903129657228018, 0.0014903129657228018, 0.0014903129657228018, 0.0014903129657228018, 0.0014903129657228018, 0.0014903129657228018, 0.0014903129657228018, 0.03353204172876304, 0.0014903129657228018, 0.0029806259314456036, 0.0029806259314456036, 0.0029806259314456036, 0.0029806259314456036, 0.0029806259314456036, 0.0029806259314456036, 0.0037257824143070045, 0.005961251862891207, 0.00819672131147541, 0.00894187779433681, 0.011177347242921014, 0.01713859910581222, 0.02459016393442623, 0.041728763040238454, 0.2421758569299553], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Scramblase.gap.json b/pfam_gap_rates/Scramblase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..646a84dd0ea78cf613b5eb730b74f0f711ecc7ff
--- /dev/null
+++ b/pfam_gap_rates/Scramblase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec2p.gap.json b/pfam_gap_rates/Sec2p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d61f7e1aec6f1acae92321c43d7c49a579fd531f
--- /dev/null
+++ b/pfam_gap_rates/Sec2p.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec39.gap.json b/pfam_gap_rates/Sec39.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d29243e441bf2eaeba9d14739b29f3f2e13a36ff
--- /dev/null
+++ b/pfam_gap_rates/Sec39.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec63.gap.json b/pfam_gap_rates/Sec63.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c06b6efb2d315a87e92a39700c2e1c53c8c70aa
--- /dev/null
+++ b/pfam_gap_rates/Sec63.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec7_N.gap.json b/pfam_gap_rates/Sec7_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5adbd94bb0dce6581bff0617c52babeb4b263787
--- /dev/null
+++ b/pfam_gap_rates/Sec7_N.gap.json
@@ -0,0 +1 @@
+{"family": "Sec7_N", "n_seqs": 1118, "length": 258, "gap_rates": [0.8846153846153846, 0.5304114490161002, 0.3685152057245081, 0.3112701252236136, 0.28711985688729874, 0.21645796064400716, 0.16010733452593917, 0.1520572450805009, 0.14669051878354203, 0.1440071556350626, 0.1404293381037567, 0.13237924865831843, 0.13237924865831843, 0.13059033989266547, 0.12880143112701253, 0.4803220035778175, 0.4856887298747764, 0.3935599284436494, 0.15742397137745975, 0.1547406082289803, 0.16100178890876565, 0.5178890876565295, 0.5805008944543828, 0.6288014311270125, 0.8202146690518783, 0.9186046511627907, 0.6762075134168157, 0.6046511627906976, 0.5679785330948122, 0.2182468694096601, 0.24150268336314848, 0.5617173524150268, 0.5196779964221825, 0.8130590339892666, 0.17262969588550983, 0.15652951699463327, 0.08765652951699464, 0.08228980322003578, 0.07602862254025045, 0.07334525939177101, 0.07245080500894455, 0.06976744186046512, 0.06708407871198568, 0.06618962432915922, 0.06440071556350627, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SecA_PP_bind.gap.json b/pfam_gap_rates/SecA_PP_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c24f0877ae8a740e0d4da0de569ff6a46e07193
--- /dev/null
+++ b/pfam_gap_rates/SecA_PP_bind.gap.json
@@ -0,0 +1 @@
+{"family": "SecA_PP_bind", "n_seqs": 2327, "length": 160, "gap_rates": [0.4972067039106145, 0.21787709497206703, 0.14654061022776108, 0.11817791147400086, 0.09325311559948432, 0.08981521272024065, 0.08336914482165879, 0.07348517404383326, 0.06317146540610227, 0.05328749462827675, 0.04984959174903309, 0.04512247529007306, 0.04082509669101848, 0.03867640739149119, 0.9058874086807047, 0.03738719381177482, 0.0365277180919639, 0.034379028792436615, 0.04941985388912763, 0.12462397937258272, 0.7335625268586162, 0.7382896433175763, 0.7481736140954018, 0.7928663515255694, 0.7980232058444349, 0.8461538461538461, 0.8796733992264718, 0.9333906317146541, 0.9480017189514396, 0.8968629136226901, 0.8710786420283627, 0.8048990116029222, 0.7963042544048131, 0.7889987107864203, 0.740868070477009, 0.73700042973786, 0.731413837559089, 0.01847872797593468, 0.01847872797593468, 0.01847872797593468, 0.017619252256123763, 0.017619252256123763, 0.017619252256123763, 0.017189514396218308, 0.018048990116029222, 0.018048990116029222, 0.015900300816501935, 0.015900300816501935, 0.015900300816501935, 0.015900300816501935, 0.015900300816501935, 0.015900300816501935, 0.015470562956596476, 0.015470562956596476, 0.015470562956596476, 0.015470562956596476, 0.015040825096691019, 0.015040825096691019, 0.015040825096691019, 0.015040825096691019, 0.015470562956596476, 0.8839707778255265, 0.8912763214439192, 0.9127632144391921, 0.8839707778255265, 0.8831113021057155, 0.01633003867640739, 0.024924795874516546, 0.022776106574989255, 0.7159432746024925, 0.7193811774817361, 0.7589170605930382, 0.9101847872797594, 0.9110442629995703, 0.9114740008594757, 0.9114740008594757, 0.9119037387193811, 0.9123334765792867, 0.9123334765792867, 0.9131929522990976, 0.9170605930382467, 0.9144821658788139, 0.9123334765792867, 0.9123334765792867, 0.9123334765792867, 0.9119037387193811, 0.9114740008594757, 0.9110442629995703, 0.9110442629995703, 0.9045981951009884, 0.721100128921358, 0.7193811774817361, 0.7150837988826816, 0.6605070906746885, 0.020627417275461968, 0.017619252256123763, 0.017189514396218308, 0.017619252256123763, 0.9209282337773957, 0.9394069617533305, 0.9157713794585303, 0.01289213579716373, 0.013321873657069187, 0.01461108723678556, 0.018048990116029222, 0.17619252256123766, 0.012032660077352814, 0.008165019338203695, 0.006446067898581865, 0.005156854318865492, 0.005156854318865492, 0.004727116458960034, 0.004297378599054577, 0.0034379028792436614, 0.0034379028792436614, 0.0030081650193382035, 0.0030081650193382035, 0.002578427159432746, 0.002578427159432746, 0.002578427159432746, 0.004297378599054577, 0.004297378599054577, 0.0030081650193382035, 0.0034379028792436614, 0.0030081650193382035, 0.0034379028792436614, 0.0030081650193382035, 0.0030081650193382035, 0.0030081650193382035, 0.0030081650193382035, 0.0030081650193382035, 0.003867640739149119, 0.0034379028792436614, 0.0034379028792436614, 0.0034379028792436614, 0.0034379028792436614, 0.0034379028792436614, 0.003867640739149119, 0.0030081650193382035, 0.0030081650193382035, 0.00558659217877095, 0.00558659217877095, 0.006016330038676407, 0.006016330038676407, 0.006016330038676407, 0.006016330038676407, 0.006016330038676407, 0.006875805758487323, 0.00730554361839278, 0.008165019338203695, 0.008594757198109154, 0.008594757198109154, 0.008594757198109154, 0.008594757198109154, 0.009024495058014611, 0.009454232917920068, 0.009454232917920068, 0.010313708637730984, 0.010743446497636441, 0.036097980232058444], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ser_hydrolase.gap.json b/pfam_gap_rates/Ser_hydrolase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e72f99052a4fe7e88143a5526003d7fd5f2a326
--- /dev/null
+++ b/pfam_gap_rates/Ser_hydrolase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Serpin.gap.json b/pfam_gap_rates/Serpin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f82abb60ffe1e6018e920af640484e41394bf6f6
--- /dev/null
+++ b/pfam_gap_rates/Serpin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SfsA.gap.json b/pfam_gap_rates/SfsA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29fb49bbecfb8c1ac56b1d17f84099a822bdd705
--- /dev/null
+++ b/pfam_gap_rates/SfsA.gap.json
@@ -0,0 +1 @@
+{"family": "SfsA", "n_seqs": 668, "length": 232, "gap_rates": [0.19311377245508982, 0.09131736526946108, 0.0748502994011976, 0.0688622754491018, 0.06736526946107785, 0.06736526946107785, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06736526946107785, 0.5254491017964071, 0.06736526946107785, 0.2874251497005988, 0.9341317365269461, 0.33682634730538924, 0.2275449101796407, 0.059880239520958084, 0.7529940119760479, 0.8098802395209581, 0.7290419161676647, 0.05389221556886228, 0.05389221556886228, 0.05389221556886228, 0.05239520958083832, 0.05239520958083832, 0.05239520958083832, 0.05389221556886228, 0.05389221556886228, 0.05538922155688623, 0.05239520958083832, 0.05089820359281437, 0.05089820359281437, 0.04940119760479042, 0.05089820359281437, 0.04940119760479042, 0.04790419161676647, 0.04790419161676647, 0.04640718562874251, 0.04640718562874251, 0.04790419161676647, 0.04640718562874251, 0.04640718562874251, 0.04640718562874251, 0.1062874251497006, 0.09431137724550898, 0.05389221556886228, 0.9446107784431138, 0.04790419161676647, 0.04341317365269461, 0.04491017964071856, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.04640718562874251, 0.04491017964071856, 0.04491017964071856, 0.8547904191616766, 0.9266467065868264, 0.8802395209580839, 0.624251497005988, 0.04341317365269461, 0.04491017964071856, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.04341317365269461, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.8967065868263473, 0.09580838323353294, 0.11526946107784432, 0.15419161676646706, 0.17365269461077845, 0.1661676646706587, 0.12574850299401197, 0.10479041916167664, 0.9026946107784432, 0.10029940119760479, 0.08832335329341318, 0.0748502994011976, 0.04940119760479042, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.7664670658682635, 0.9176646706586826, 0.5374251497005988, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04491017964071856, 0.0748502994011976, 0.10329341317365269, 0.47904191616766467, 0.907185628742515, 0.9341317365269461, 0.9206586826347305, 0.8607784431137725, 0.12574850299401197, 0.09580838323353294, 0.04491017964071856, 0.04491017964071856, 0.04341317365269461, 0.04341317365269461, 0.04341317365269461, 0.04491017964071856, 0.04341317365269461, 0.04341317365269461, 0.041916167664670656, 0.040419161676646706, 0.040419161676646706, 0.040419161676646706, 0.040419161676646706, 0.9236526946107785, 0.9401197604790419, 0.7200598802395209, 0.04790419161676647, 0.059880239520958084, 0.04790419161676647, 0.04790419161676647, 0.04640718562874251, 0.04341317365269461, 0.04341317365269461, 0.04491017964071856, 0.03592814371257485, 0.03293413173652695, 0.03293413173652695, 0.03293413173652695, 0.0344311377245509, 0.0344311377245509, 0.0344311377245509, 0.0344311377245509, 0.0344311377245509, 0.0344311377245509, 0.0344311377245509, 0.03293413173652695, 0.03293413173652695, 0.03293413173652695, 0.03293413173652695, 0.03592814371257485, 0.040419161676646706, 0.040419161676646706, 0.038922155688622756, 0.11377245508982035, 0.0374251497005988, 0.0344311377245509, 0.03293413173652695, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.029940119760479042, 0.038922155688622756, 0.05089820359281437, 0.029940119760479042, 0.03293413173652695, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.0374251497005988, 0.0374251497005988, 0.03293413173652695, 0.03143712574850299, 0.03293413173652695, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.03143712574850299, 0.03293413173652695, 0.03293413173652695, 0.040419161676646706, 0.04491017964071856, 0.05089820359281437, 0.05538922155688623, 0.07035928143712575, 0.05239520958083832, 0.05239520958083832, 0.05389221556886228, 0.05538922155688623, 0.05538922155688623, 0.05688622754491018, 0.059880239520958084, 0.06287425149700598, 0.0688622754491018, 0.08083832335329341, 0.09730538922155689, 0.12425149700598802, 0.14221556886227546, 0.17964071856287425, 0.23203592814371257, 0.4221556886227545, 0.9146706586826348], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Shikimate_DH.gap.json b/pfam_gap_rates/Shikimate_DH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..340f54237d1a088dc7ec3e98dec648b4d278c37e
--- /dev/null
+++ b/pfam_gap_rates/Shikimate_DH.gap.json
@@ -0,0 +1 @@
+{"family": "Shikimate_DH", "n_seqs": 2606, "length": 143, "gap_rates": [0.8472755180353031, 0.6722947045280123, 0.6212586339217191, 0.5894090560245587, 0.5495011511895626, 0.5199539524174981, 0.47927858787413663, 0.45817344589409054, 0.9251726784343822, 0.28779739063699156, 0.204911742133538, 0.1557943207981581, 0.10706062931696086, 0.0748273215656178, 0.0498848810437452, 0.021872601688411358, 0.0072908672294704525, 0.0072908672294704525, 0.006907137375287797, 0.0061396776669224865, 0.0061396776669224865, 0.0061396776669224865, 0.0061396776669224865, 0.005372217958557176, 0.005372217958557176, 0.005372217958557176, 0.005372217958557176, 0.0061396776669224865, 0.005372217958557176, 0.005372217958557176, 0.0061396776669224865, 0.0061396776669224865, 0.0061396776669224865, 0.015732924021488872, 0.008825786646201074, 0.00844205679201842, 0.008058326937835763, 0.006523407521105142, 0.15003837298541828, 0.005755947812739831, 0.005372217958557176, 0.005372217958557176, 0.004604758250191865, 0.00422102839600921, 0.007674597083653108, 0.00920951650038373, 0.02072141212586339, 0.010744435917114352, 0.008058326937835763, 0.008058326937835763, 0.011511895625479662, 0.012279355333844973, 0.011511895625479662, 0.014965464313123561, 0.013046815042210284, 0.010360706062931695, 0.00920951650038373, 0.9412893323100537, 0.8783576362240982, 0.08096699923254029, 0.08902532617037605, 0.12509593246354567, 0.6143514965464313, 0.5069071373752878, 0.4508825786646201, 0.10744435917114352, 0.10207214121258634, 0.09247889485801995, 0.09401381427475057, 0.09785111281657713, 0.10130468150422103, 0.10744435917114352, 0.11128165771297006, 0.17536454336147353, 0.17114351496546432, 0.15387567152724482, 0.1289332310053722, 0.12164236377590176, 0.12125863392171911, 0.12125863392171911, 0.12240982348426707, 0.1239447429009977, 0.1281657712970069, 0.13315425940138143, 0.13852647735993862, 0.1454336147352264, 0.19723714504988488, 0.30583269378357636, 0.37298541826554105, 0.430928626247122, 0.4351496546431312, 0.43745203376822717, 0.4439754412893323, 0.44704528012279354, 0.44896392939370683, 0.4516500383729854, 0.4528012279355334, 0.453184957789716, 0.45548733691481197, 0.4689178818112049, 0.4727551803530315, 0.4927091327705295, 0.546815042210284, 0.5583269378357636, 0.6496546431312357, 0.615886415963162, 0.945510360706063, 0.6980046047582502, 0.5625479662317728, 0.5295471987720645, 0.4946277820414428, 0.46699923254029163, 0.46699923254029163, 0.46699923254029163, 0.4673829623944743, 0.4693016116653876, 0.4727551803530315, 0.4758250191864927, 0.4769762087490407, 0.47927858787413663, 0.47966231772831924, 0.4800460475825019, 0.48081350729086725, 0.48656945510360705, 0.48810437452033767, 0.488871834228703, 0.49002302379125096, 0.49002302379125096, 0.5103607060629317, 0.5092095165003837, 0.5080583269378358, 0.5126630851880276, 0.5138142747505756, 0.5161166538756715, 0.5176515732924022, 0.5226400613967767, 0.5237912509593247, 0.5280122793553338, 0.5337682271680737, 0.5452801227935533, 0.5717574827321565, 0.6350729086722947, 0.7029930928626247], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Siah-Interact_N.gap.json b/pfam_gap_rates/Siah-Interact_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a043e2a9ced9398b80d6fc5f1596bfce8bff5c1
--- /dev/null
+++ b/pfam_gap_rates/Siah-Interact_N.gap.json
@@ -0,0 +1 @@
+{"family": "Siah-Interact_N", "n_seqs": 102, "length": 83, "gap_rates": [0.8725490196078431, 0.6274509803921569, 0.49019607843137253, 0.20588235294117646, 0.11764705882352941, 0.049019607843137254, 0.049019607843137254, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.029411764705882353, 0.0196078431372549, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.06862745098039216, 0.06862745098039216, 0.5098039215686274, 0.5, 0.47058823529411764, 0.4117647058823529, 0.4117647058823529, 0.4215686274509804, 0.4117647058823529, 0.24509803921568626, 0.24509803921568626, 0.24509803921568626, 0.2549019607843137, 0.2549019607843137, 0.2549019607843137, 0.29411764705882354, 0.29411764705882354, 0.3333333333333333, 0.8529411764705882, 0.9117647058823529, 0.8823529411764706, 0.8235294117647058, 0.6568627450980392, 0.5784313725490197, 0.5294117647058824, 0.5098039215686274, 0.47058823529411764, 0.4215686274509804, 0.4117647058823529, 0.4411764705882353, 0.9215686274509803, 0.4411764705882353, 0.49019607843137253, 0.5980392156862745, 0.6078431372549019, 0.5588235294117647, 0.5980392156862745, 0.5980392156862745, 0.6078431372549019, 0.5784313725490197, 0.5784313725490197, 0.5784313725490197, 0.5784313725490197, 0.5882352941176471, 0.6176470588235294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma54_activat.gap.json b/pfam_gap_rates/Sigma54_activat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ce0120a9caf70baeab96cef6871743820bd755e
--- /dev/null
+++ b/pfam_gap_rates/Sigma54_activat.gap.json
@@ -0,0 +1 @@
+{"family": "Sigma54_activat", "n_seqs": 5000, "length": 169, "gap_rates": [0.3992, 0.1912, 0.1294, 0.0948, 0.0658, 0.0536, 0.0472, 0.0396, 0.0368, 0.0358, 0.0346, 0.034, 0.0334, 0.033, 0.0322, 0.0318, 0.0316, 0.0316, 0.0308, 0.0302, 0.028, 0.0268, 0.0254, 0.025, 0.0246, 0.0246, 0.0246, 0.0246, 0.0248, 0.0246, 0.0246, 0.0246, 0.0246, 0.0244, 0.0244, 0.0242, 0.0244, 0.0242, 0.0246, 0.024, 0.024, 0.0236, 0.0232, 0.023, 0.0228, 0.0232, 0.0238, 0.0354, 0.034, 0.0266, 0.0286, 0.0332, 0.0232, 0.0232, 0.0236, 0.0234, 0.0234, 0.0236, 0.0232, 0.0238, 0.024, 0.0242, 0.0262, 0.0254, 0.0282, 0.0286, 0.0248, 0.0246, 0.0248, 0.0248, 0.0252, 0.0254, 0.0266, 0.0332, 0.0422, 0.0556, 0.0686, 0.0736, 0.0644, 0.0594, 0.051, 0.0458, 0.0408, 0.0548, 0.021, 0.0162, 0.8328, 0.0154, 0.0152, 0.015, 0.015, 0.0156, 0.015, 0.0146, 0.0142, 0.0144, 0.0146, 0.0146, 0.0144, 0.0146, 0.0148, 0.015, 0.015, 0.015, 0.015, 0.0144, 0.0144, 0.0148, 0.0152, 0.0144, 0.0146, 0.0146, 0.0146, 0.0148, 0.0146, 0.0146, 0.0142, 0.0144, 0.0152, 0.0158, 0.0162, 0.022, 0.0238, 0.0252, 0.0262, 0.027, 0.0272, 0.0264, 0.0286, 0.028, 0.0226, 0.0216, 0.0208, 0.0206, 0.0204, 0.02, 0.0202, 0.0206, 0.0208, 0.0206, 0.0216, 0.0216, 0.022, 0.0242, 0.0338, 0.0332, 0.0334, 0.0352, 0.0378, 0.0382, 0.0382, 0.0374, 0.043, 0.0386, 0.0384, 0.0384, 0.0422, 0.0612, 0.0612, 0.0618, 0.0624, 0.0628, 0.0634, 0.064, 0.077, 0.094, 0.111, 0.1466, 0.8212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma70_r1_2.gap.json b/pfam_gap_rates/Sigma70_r1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a42bc08a1d3d28d544185aae59ecfa728f89a1b
--- /dev/null
+++ b/pfam_gap_rates/Sigma70_r1_2.gap.json
@@ -0,0 +1 @@
+{"family": "Sigma70_r1_2", "n_seqs": 3723, "length": 34, "gap_rates": [0.2527531560569433, 0.13188289014235832, 0.07601396723072791, 0.0443190975020145, 0.0158474348643567, 0.004834810636583401, 0.0037604082728982004, 0.0032232070910556, 0.0021488047273704003, 0.0024174053182917004, 0.0016116035455278, 0.0016116035455278, 0.0021488047273704003, 0.0005372011818426001, 0.00026860059092130003, 0.0, 0.0, 0.0, 0.00026860059092130003, 0.0, 0.0, 0.0010744023636852001, 0.0021488047273704003, 0.0029546065001343, 0.0051034112275047, 0.0059092130002686, 0.010744023636852002, 0.026054257319366104, 0.0470051034112275, 0.07520816545796401, 0.136986301369863, 0.22992210582863282, 0.40236368520010746, 0.7096427612140747], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sin3a_C.gap.json b/pfam_gap_rates/Sin3a_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42aa3a02b035bdfd87417a39641fda618c283a8b
--- /dev/null
+++ b/pfam_gap_rates/Sin3a_C.gap.json
@@ -0,0 +1 @@
+{"family": "Sin3a_C", "n_seqs": 439, "length": 341, "gap_rates": [0.2164009111617312, 0.1275626423690205, 0.09567198177676538, 0.09339407744874716, 0.08200455580865604, 0.07289293849658314, 0.07061503416856492, 0.07061503416856492, 0.0683371298405467, 0.0683371298405467, 0.06605922551252848, 0.06605922551252848, 0.06605922551252848, 0.06605922551252848, 0.06378132118451026, 0.06378132118451026, 0.06378132118451026, 0.05922551252847381, 0.05922551252847381, 0.05922551252847381, 0.05922551252847381, 0.05922551252847381, 0.05922551252847381, 0.05922551252847381, 0.8200455580865603, 0.13439635535307518, 0.14350797266514806, 0.14350797266514806, 0.15034168564920272, 0.14350797266514806, 0.08428246013667426, 0.07972665148063782, 0.8337129840546698, 0.09111617312072894, 0.07289293849658314, 0.0774487471526196, 0.07061503416856492, 0.06378132118451026, 0.05922551252847381, 0.06150341685649203, 0.09567198177676538, 0.11617312072892938, 0.2460136674259681, 0.23462414578587698, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Sina.gap.json b/pfam_gap_rates/Sina.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46baab5b5469fbb438ab184082c3fb841c4dccd3
--- /dev/null
+++ b/pfam_gap_rates/Sina.gap.json
@@ -0,0 +1 @@
+{"family": "Sina", "n_seqs": 601, "length": 208, "gap_rates": [0.47587354409317806, 0.22462562396006655, 0.20632279534109818, 0.1930116472545757, 0.16306156405990016, 0.1281198003327787, 0.11480865224625623, 0.11148086522462562, 0.10815307820299501, 0.1048252911813644, 0.10149750415973377, 0.09650582362728785, 0.09317803660565724, 0.08485856905158069, 0.07986688851913477, 0.07653910149750416, 0.07321131447587355, 0.06988352745424292, 0.06988352745424292, 0.07653910149750416, 0.11647254575707154, 0.10815307820299501, 0.06655574043261231, 0.059900166389351084, 0.059900166389351084, 0.064891846921797, 0.06156405990016639, 0.06156405990016639, 0.059900166389351084, 0.05823627287853577, 0.06156405990016639, 0.056572379367720464, 0.05823627287853577, 0.04991680532445923, 0.048252911813643926, 0.04658901830282862, 0.04658901830282862, 0.04658901830282862, 0.04492512479201331, 0.04159733777038269, 0.03993344425956739, 0.04159733777038269, 0.04159733777038269, 0.03993344425956739, 0.064891846921797, 0.0632279534109817, 0.03494176372712146, 0.03494176372712146, 0.04326123128119801, 0.21963394342762063, 0.3610648918469218, 0.9334442595673876, 0.891846921797005, 0.18469217970049917, 0.05490848585690516, 0.03826955074875208, 0.03826955074875208, 0.03826955074875208, 0.03993344425956739, 0.03993344425956739, 0.04159733777038269, 0.051580698835274545, 0.059900166389351084, 0.051580698835274545, 0.04159733777038269, 0.04159733777038269, 0.04326123128119801, 0.04326123128119801, 0.04492512479201331, 0.04991680532445923, 0.05490848585690516, 0.05490848585690516, 0.056572379367720464, 0.8452579034941764, 0.5241264559068219, 0.24459234608985025, 0.24126455906821964, 0.3144758735440932, 0.259567387687188, 0.24292845257903495, 0.21630615640599002, 0.21963394342762063, 0.2129783693843594, 0.2079866888519135, 0.20632279534109818, 0.19800332778702162, 0.20299500831946754, 0.5424292845257903, 0.5307820299500832, 0.9351081530782029, 0.30782029950083195, 0.2978369384359401, 0.2878535773710483, 0.2995008319467554, 0.2911813643926789, 0.2978369384359401, 0.5873544093178037, 0.30282861896838603, 0.28452579034941766, 0.2762063227953411, 0.26455906821963393, 0.2628951747088186, 0.259567387687188, 0.26622296173044924, 0.2628951747088186, 0.26455906821963393, 0.26455906821963393, 0.26788685524126454, 0.2795341098169717, 0.3227953410981697, 0.2961730449251248, 0.2795341098169717, 0.27121464226289516, 0.27454242928452577, 0.2778702163061564, 0.2795341098169717, 0.2795341098169717, 0.281198003327787, 0.2795341098169717, 0.281198003327787, 0.2911813643926789, 0.3011647254575707, 0.4292845257903494, 0.4891846921797005, 0.7986688851913477, 0.3910149750415973, 0.3560732113144759, 0.3161397670549085, 0.3161397670549085, 0.31114808652246256, 0.30948419301164726, 0.30282861896838603, 0.2995008319467554, 0.2961730449251248, 0.2945091514143095, 0.2978369384359401, 0.3211314475873544, 0.2995008319467554, 0.2995008319467554, 0.2961730449251248, 0.3011647254575707, 0.3011647254575707, 0.30449251247920134, 0.3011647254575707, 0.3011647254575707, 0.2995008319467554, 0.30449251247920134, 0.30282861896838603, 0.2995008319467554, 0.2995008319467554, 0.2995008319467554, 0.30282861896838603, 0.30449251247920134, 0.30782029950083195, 0.3161397670549085, 0.3227953410981697, 0.9234608985024958, 0.9101497504159733, 0.32945091514143093, 0.32945091514143093, 0.33277870216306155, 0.33444259567387685, 0.33444259567387685, 0.3410981697171381, 0.34608985024958405, 0.34608985024958405, 0.3544093178036606, 0.3610648918469218, 0.36938435940099834, 0.40099833610648916, 0.39767054908485855, 0.39767054908485855, 0.4043261231281198, 0.41430948419301167, 0.41430948419301167, 0.4193011647254576, 0.4193011647254576, 0.4292845257903494, 0.4226289517470882, 0.4276206322795341, 0.4292845257903494, 0.4276206322795341, 0.4276206322795341, 0.4276206322795341, 0.4292845257903494, 0.4276206322795341, 0.43094841930116473, 0.43760399334442596, 0.44093178036605657, 0.4442595673876872, 0.4442595673876872, 0.4475873544093178, 0.4509151414309484, 0.4525790349417637, 0.454242928452579, 0.4559068219633943, 0.46089850249584025, 0.46755407653910147, 0.6988352745424293, 0.7454242928452579, 0.47920133111480867, 0.480865224625624, 0.4841930116472546, 0.4891846921797005, 0.4925124792013311, 0.5041597337770383, 0.5224625623960066, 0.5906821963394343], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sipho_Gp157.gap.json b/pfam_gap_rates/Sipho_Gp157.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..109532576bb3f39c820ddb9645dab7648014fae0
--- /dev/null
+++ b/pfam_gap_rates/Sipho_Gp157.gap.json
@@ -0,0 +1 @@
+{"family": "Sipho_Gp157", "n_seqs": 111, "length": 183, "gap_rates": [0.4144144144144144, 0.3153153153153153, 0.2702702702702703, 0.24324324324324326, 0.23423423423423423, 0.23423423423423423, 0.22522522522522523, 0.21621621621621623, 0.1891891891891892, 0.1891891891891892, 0.17117117117117117, 0.15315315315315314, 0.16216216216216217, 0.15315315315315314, 0.15315315315315314, 0.21621621621621623, 0.9279279279279279, 0.25225225225225223, 0.15315315315315314, 0.16216216216216217, 0.14414414414414414, 0.1891891891891892, 0.22522522522522523, 0.36936936936936937, 0.5315315315315315, 0.46846846846846846, 0.21621621621621623, 0.9459459459459459, 0.9369369369369369, 0.13513513513513514, 0.0990990990990991, 0.08108108108108109, 0.09009009009009009, 0.918918918918919, 0.9009009009009009, 0.07207207207207207, 0.06306306306306306, 0.05405405405405406, 0.06306306306306306, 0.08108108108108109, 0.05405405405405406, 0.9369369369369369, 0.9279279279279279, 0.06306306306306306, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.018018018018018018, 0.009009009009009009, 0.018018018018018018, 0.9279279279279279, 0.9369369369369369, 0.918918918918919, 0.009009009009009009, 0.018018018018018018, 0.02702702702702703, 0.018018018018018018, 0.009009009009009009, 0.0, 0.009009009009009009, 0.0, 0.0, 0.0, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.8738738738738738, 0.8918918918918919, 0.8558558558558559, 0.21621621621621623, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.036036036036036036, 0.04504504504504504, 0.04504504504504504, 0.8828828828828829, 0.8018018018018018, 0.05405405405405406, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.036036036036036036, 0.06306306306306306, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.8918918918918919, 0.9459459459459459, 0.9459459459459459, 0.8918918918918919, 0.3333333333333333, 0.3153153153153153, 0.09009009009009009, 0.09009009009009009, 0.06306306306306306, 0.26126126126126126, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.06306306306306306, 0.05405405405405406, 0.05405405405405406, 0.06306306306306306, 0.07207207207207207, 0.11711711711711711, 0.13513513513513514, 0.12612612612612611, 0.12612612612612611, 0.13513513513513514, 0.15315315315315314, 0.15315315315315314, 0.15315315315315314, 0.15315315315315314, 0.15315315315315314, 0.8108108108108109, 0.15315315315315314, 0.16216216216216217, 0.1891891891891892, 0.1891891891891892, 0.2072072072072072, 0.23423423423423423, 0.2702702702702703, 0.4144144144144144], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Snapin_Pallidin.gap.json b/pfam_gap_rates/Snapin_Pallidin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7faa5fe2cb37f039ff911239c5bb367b1a01af47
--- /dev/null
+++ b/pfam_gap_rates/Snapin_Pallidin.gap.json
@@ -0,0 +1 @@
+{"family": "Snapin_Pallidin", "n_seqs": 210, "length": 91, "gap_rates": [0.7095238095238096, 0.38095238095238093, 0.28095238095238095, 0.2523809523809524, 0.23333333333333334, 0.22380952380952382, 0.19047619047619047, 0.16666666666666666, 0.1523809523809524, 0.1380952380952381, 0.13333333333333333, 0.11904761904761904, 0.10952380952380952, 0.10476190476190476, 0.09523809523809523, 0.08571428571428572, 0.08095238095238096, 0.07142857142857142, 0.06190476190476191, 0.06190476190476191, 0.06190476190476191, 0.05714285714285714, 0.05714285714285714, 0.05238095238095238, 0.04285714285714286, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.023809523809523808, 0.009523809523809525, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.047619047619047616, 0.014285714285714285, 0.014285714285714285, 0.009523809523809525, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.7095238095238096, 0.6761904761904762, 0.6333333333333333, 0.3333333333333333, 0.06190476190476191, 0.03333333333333333, 0.023809523809523808, 0.023809523809523808, 0.03333333333333333, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.04285714285714286, 0.04285714285714286, 0.047619047619047616, 0.05238095238095238, 0.05238095238095238, 0.05238095238095238, 0.06190476190476191, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.07142857142857142, 0.09523809523809523, 0.1, 0.1, 0.10476190476190476, 0.13333333333333333, 0.15714285714285714, 0.5904761904761905], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spec3.gap.json b/pfam_gap_rates/Spec3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95705732460e6b97e726ff13711f52b7bdd91558
--- /dev/null
+++ b/pfam_gap_rates/Spec3.gap.json
@@ -0,0 +1 @@
+{"family": "Spec3", "n_seqs": 119, "length": 90, "gap_rates": [0.5882352941176471, 0.24369747899159663, 0.20168067226890757, 0.18487394957983194, 0.18487394957983194, 0.16806722689075632, 0.15126050420168066, 0.14285714285714285, 0.14285714285714285, 0.13445378151260504, 0.13445378151260504, 0.12605042016806722, 0.12605042016806722, 0.12605042016806722, 0.12605042016806722, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.12605042016806722, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.08403361344537816, 0.07563025210084033, 0.058823529411764705, 0.058823529411764705, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.09243697478991597, 0.09243697478991597, 0.12605042016806722, 0.13445378151260504, 0.12605042016806722, 0.9243697478991597, 0.13445378151260504, 0.1092436974789916, 0.08403361344537816, 0.08403361344537816, 0.09243697478991597, 0.1092436974789916, 0.11764705882352941, 0.14285714285714285, 0.226890756302521, 0.19327731092436976, 0.5546218487394958, 0.8319327731092437, 0.8319327731092437, 0.5378151260504201, 0.15126050420168066, 0.15966386554621848, 0.15966386554621848, 0.14285714285714285, 0.11764705882352941, 0.1092436974789916, 0.06722689075630252, 0.06722689075630252, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.1092436974789916, 0.10084033613445378, 0.08403361344537816, 0.3277310924369748, 0.09243697478991597, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.09243697478991597, 0.12605042016806722, 0.5126050420168067], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spermine_synth.gap.json b/pfam_gap_rates/Spermine_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19a658bdb54f0efcc1f6c41d376a1de9f823bfb8
--- /dev/null
+++ b/pfam_gap_rates/Spermine_synth.gap.json
@@ -0,0 +1 @@
+{"family": "Spermine_synth", "n_seqs": 2453, "length": 269, "gap_rates": [0.8695474928658785, 0.6746840603342845, 0.6661231145536078, 0.6608234814512841, 0.6563391765185487, 0.6494088870770485, 0.6396249490419894, 0.6379942927028129, 0.9437423562984101, 0.8214431308601712, 0.7627395026498166, 0.5715450468813698, 0.5532001630656339, 0.5430085609457806, 0.5324092947411333, 0.5287403179779862, 0.52221769262128, 0.5161027313493681, 0.5128414186710151, 0.5079494496534855, 0.49041989400733793, 0.47085201793721976, 0.46147574398695473, 0.45454545454545453, 0.45128414186710153, 0.4419078679168365, 0.43416225030574807, 0.42845495311863024, 0.4247859763554831, 0.4235629841011007, 0.418263350998777, 0.4117407256420709, 0.4060334284549531, 0.40236445169180596, 0.4019567876070118, 0.4019567876070118, 0.40154912352221767, 0.3991031390134529, 0.3978801467590705, 0.3933958418263351, 0.39135752140236446, 0.38972686506318793, 0.386873216469629, 0.3819812474520995, 0.37871993477374644, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SpoIIIAH.gap.json b/pfam_gap_rates/SpoIIIAH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec0967ad71b11ebf8ee77bd3e253a71f8f73341e
--- /dev/null
+++ b/pfam_gap_rates/SpoIIIAH.gap.json
@@ -0,0 +1 @@
+{"family": "SpoIIIAH", "n_seqs": 393, "length": 272, "gap_rates": [0.4071246819338422, 0.3944020356234097, 0.39185750636132316, 0.37404580152671757, 0.35877862595419846, 0.35368956743002544, 0.35368956743002544, 0.3511450381679389, 0.3486005089058524, 0.3486005089058524, 0.3486005089058524, 0.3486005089058524, 0.3511450381679389, 0.3486005089058524, 0.3486005089058524, 0.3486005089058524, 0.3486005089058524, 0.3486005089058524, 0.3486005089058524, 0.3486005089058524, 0.3486005089058524, 0.3460559796437659, 0.3460559796437659, 0.37150127226463103, 0.4198473282442748, 0.6564885496183206, 0.6768447837150128, 0.8320610687022901, 0.910941475826972, 0.9338422391857506, 0.9414758269720102, 0.9185750636132316, 0.8702290076335878, 0.7913486005089059, 0.5267175572519084, 0.5267175572519084, 0.46564885496183206, 0.43765903307888043, 0.41475826972010177, 0.3994910941475827, 0.37659033078880405, 0.36895674300254455, 0.366412213740458, 0.37404580152671757, 0.36895674300254455, 0.366412213740458, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SpoIIID.gap.json b/pfam_gap_rates/SpoIIID.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fc98dfb583da28d8bb679dc78f9b50585948b43
--- /dev/null
+++ b/pfam_gap_rates/SpoIIID.gap.json
@@ -0,0 +1 @@
+{"family": "SpoIIID", "n_seqs": 376, "length": 81, "gap_rates": [0.3191489361702128, 0.18085106382978725, 0.13297872340425532, 0.10106382978723404, 0.047872340425531915, 0.03723404255319149, 0.02925531914893617, 0.026595744680851064, 0.015957446808510637, 0.015957446808510637, 0.013297872340425532, 0.007978723404255319, 0.007978723404255319, 0.005319148936170213, 0.005319148936170213, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.005319148936170213, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.0026595744680851063, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.007978723404255319, 0.007978723404255319, 0.007978723404255319, 0.007978723404255319, 0.007978723404255319, 0.010638297872340425, 0.02127659574468085, 0.023936170212765957, 0.03723404255319149, 0.0398936170212766, 0.03723404255319149, 0.0425531914893617, 0.04521276595744681, 0.04521276595744681, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.05319148936170213, 0.05053191489361702, 0.05053191489361702, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.047872340425531915, 0.05053191489361702, 0.05053191489361702, 0.05053191489361702, 0.05319148936170213, 0.05319148936170213, 0.05319148936170213, 0.05319148936170213, 0.05319148936170213, 0.05319148936170213, 0.05319148936170213, 0.05585106382978723, 0.05585106382978723, 0.05585106382978723, 0.05585106382978723, 0.05585106382978723, 0.05585106382978723, 0.05585106382978723, 0.05585106382978723, 0.05851063829787234, 0.061170212765957445, 0.15159574468085107, 0.5638297872340425], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoIIM.gap.json b/pfam_gap_rates/SpoIIM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1490a6e66cc30214ea7d0695dcef9dbc3a1789ab
--- /dev/null
+++ b/pfam_gap_rates/SpoIIM.gap.json
@@ -0,0 +1 @@
+{"family": "SpoIIM", "n_seqs": 797, "length": 214, "gap_rates": [0.8682559598494354, 0.36888331242158096, 0.21706398996235884, 0.15809284818067754, 0.1191969887076537, 0.0903387703889586, 0.08155583437892096, 0.07528230865746549, 0.06900878293601004, 0.06398996235884567, 0.056461731493099125, 0.05771643663739021, 0.06148055207026349, 0.06273525721455459, 0.06398996235884567, 0.06524466750313676, 0.03889585947302384, 0.10790464240903387, 0.12672521957340024, 0.15307402760351319, 0.21706398996235884, 0.27478042659974905, 0.4090338770388959, 0.493099121706399, 0.7653701380175659, 0.8469259723964868, 0.8971141781681304, 0.9322459222082811, 0.9498117942283564, 0.9222082810539524, 0.8845671267252195, 0.7879548306148055, 0.6888331242158093, 0.4353826850690088, 0.3588456712672522, 0.2371392722710163, 0.18193224592220827, 0.13676286072772897, 0.11417816813048934, 0.10664993726474278, 0.056461731493099125, 0.7314930991217063, 0.6951066499372648, 0.6361355081555834, 0.9234629861982434, 0.8444165621079046, 0.5294855708908407, 0.46925972396486826, 0.46925972396486826, 0.043914680050188205, 0.2534504391468005, 0.3450439146800502, 0.5708908406524467, 0.7779171894604768, 0.8971141781681304, 0.6888331242158093, 0.42910915934755334, 0.2986198243412798, 0.21957340025094102, 0.05269761606022585, 0.056461731493099125, 0.04015056461731493, 0.025094102885821833, 0.053952321204516936, 0.050188205771643665, 0.04015056461731493, 0.037641154328732745, 0.08657465495608532, 0.04015056461731493, 0.018820577164366373, 0.01631116687578419, 0.013801756587202008, 0.013801756587202008, 0.011292346298619825, 0.010037641154328732, 0.010037641154328732, 0.010037641154328732, 0.011292346298619825, 0.010037641154328732, 0.010037641154328732, 0.010037641154328732, 0.02258469259723965, 0.010037641154328732, 0.010037641154328732, 0.010037641154328732, 0.011292346298619825, 0.013801756587202008, 0.01631116687578419, 0.01631116687578419, 0.027603513174404015, 0.5558343789209536, 0.1191969887076537, 0.01756587202007528, 0.011292346298619825, 0.0075282308657465494, 0.0075282308657465494, 0.006273525721455458, 0.006273525721455458, 0.015056461731493099, 0.013801756587202008, 0.012547051442910916, 0.6599749058971142, 0.00878293601003764, 0.0075282308657465494, 0.0075282308657465494, 0.006273525721455458, 0.006273525721455458, 0.006273525721455458, 0.006273525721455458, 0.006273525721455458, 0.6775407779171895, 0.006273525721455458, 0.010037641154328732, 0.9109159347553325, 0.02383939774153074, 0.02383939774153074, 0.020075282308657464, 0.01631116687578419, 0.013801756587202008, 0.01631116687578419, 0.02383939774153074, 0.6047678795483061, 0.8895859473023839, 0.5646173149309912, 0.0451693851944793, 0.1053952321204517, 0.015056461731493099, 0.00878293601003764, 0.002509410288582183, 0.002509410288582183, 0.0012547051442910915, 0.0012547051442910915, 0.0012547051442910915, 0.002509410288582183, 0.002509410288582183, 0.002509410288582183, 0.006273525721455458, 0.0037641154328732747, 0.002509410288582183, 0.005018820577164366, 0.002509410288582183, 0.002509410288582183, 0.002509410288582183, 0.0037641154328732747, 0.0037641154328732747, 0.005018820577164366, 0.005018820577164366, 0.005018820577164366, 0.005018820577164366, 0.005018820577164366, 0.005018820577164366, 0.005018820577164366, 0.005018820577164366, 0.005018820577164366, 0.005018820577164366, 0.026348808030112924, 0.02258469259723965, 0.02383939774153074, 0.02383939774153074, 0.12547051442910917, 0.24215809284818068, 0.7879548306148055, 0.9096612296110415, 0.9422835633626098, 0.946047678795483, 0.9284818067754078, 0.8858218318695107, 0.2986198243412798, 0.1806775407779172, 0.08531994981179424, 0.03889585947302384, 0.17314930991217065, 0.15056461731493098, 0.12045169385194479, 0.08406524466750313, 0.07026348808030113, 0.07779171894604768, 0.06775407779171895, 0.03262233375156838, 0.9109159347553325, 0.9397741530740276, 0.9247176913425345, 0.8971141781681304, 0.018820577164366373, 0.01756587202007528, 0.018820577164366373, 0.01631116687578419, 0.01631116687578419, 0.015056461731493099, 0.01631116687578419, 0.018820577164366373, 0.01631116687578419, 0.01631116687578419, 0.018820577164366373, 0.020075282308657464, 0.02383939774153074, 0.028858218318695106, 0.8055207026348808, 0.8105395232120451, 0.7829360100376411, 0.02258469259723965, 0.025094102885821833, 0.027603513174404015, 0.027603513174404015, 0.027603513174404015, 0.03262233375156838, 0.03513174404015056, 0.04015056461731493, 0.050188205771643665, 0.06398996235884567, 0.09535759096612297, 0.12923462986198245, 0.16311166875784192, 0.4479297365119197], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_YtrH.gap.json b/pfam_gap_rates/Spore_YtrH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b6737f447c4181ab5285b6c4412b06ba793db0f
--- /dev/null
+++ b/pfam_gap_rates/Spore_YtrH.gap.json
@@ -0,0 +1 @@
+{"family": "Spore_YtrH", "n_seqs": 115, "length": 99, "gap_rates": [0.3565217391304348, 0.06956521739130435, 0.02608695652173913, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017391304347826087, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017391304347826087, 0.06956521739130435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_permease.gap.json b/pfam_gap_rates/Spore_permease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..baeb4de830462d0f626b539581fe80ebc638ee61
--- /dev/null
+++ b/pfam_gap_rates/Spore_permease.gap.json
@@ -0,0 +1 @@
+{"family": "Spore_permease", "n_seqs": 1110, "length": 329, "gap_rates": [0.5657657657657658, 0.2864864864864865, 0.25135135135135134, 0.22972972972972974, 0.2036036036036036, 0.1810810810810811, 0.16576576576576577, 0.15045045045045044, 0.13603603603603603, 0.12252252252252252, 0.11981981981981982, 0.11801801801801802, 0.11081081081081082, 0.109009009009009, 0.1063063063063063, 0.1063063063063063, 0.11351351351351352, 0.1009009009009009, 0.10270270270270271, 0.0972972972972973, 0.0918918918918919, 0.08288288288288288, 0.07927927927927927, 0.07387387387387387, 0.07657657657657657, 0.07207207207207207, 0.07117117117117117, 0.07477477477477477, 0.07387387387387387, 0.07027027027027027, 0.07297297297297298, 0.927027027027027, 0.25765765765765763, 0.23063063063063063, 0.21081081081081082, 0.062162162162162166, 0.05945945945945946, 0.05765765765765766, 0.05675675675675676, 0.05225225225225225, 0.051351351351351354, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SprT-like.gap.json b/pfam_gap_rates/SprT-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d42ef73b8a9838683d6e5bb0e95b77e6a6d8eed
--- /dev/null
+++ b/pfam_gap_rates/SprT-like.gap.json
@@ -0,0 +1 @@
+{"family": "SprT-like", "n_seqs": 980, "length": 227, "gap_rates": [0.923469387755102, 0.5673469387755102, 0.4173469387755102, 0.3489795918367347, 0.32142857142857145, 0.3051020408163265, 0.29897959183673467, 0.28877551020408165, 0.2857142857142857, 0.27346938775510204, 0.26632653061224487, 0.2540816326530612, 0.24285714285714285, 0.23979591836734693, 0.22142857142857142, 0.21428571428571427, 0.19489795918367347, 0.1826530612244898, 0.1673469387755102, 0.8816326530612245, 0.9173469387755102, 0.9326530612244898, 0.9336734693877551, 0.923469387755102, 0.9102040816326531, 0.7602040816326531, 0.4204081632653061, 0.11428571428571428, 0.09897959183673469, 0.08469387755102041, 0.07653061224489796, 0.07755102040816327, 0.9193877551020408, 0.9469387755102041, 0.95, 0.9244897959183673, 0.8918367346938776, 0.2673469387755102, 0.0673469387755102, 0.061224489795918366, 0.06020408163265306, 0.05918367346938776, 0.05714285714285714, 0.05510204081632653, 0.05510204081632653, 0.053061224489795916, 0.06224489795918367, 0.061224489795918366, 0.053061224489795916, 0.053061224489795916, 0.05102040816326531, 0.05408163265306123, 0.46224489795918366, 0.6816326530612244, 0.7234693877551021, 0.8010204081632653, 0.8551020408163266, 0.8979591836734694, 0.9071428571428571, 0.9224489795918367, 0.9295918367346939, 0.9489795918367347, 0.936734693877551, 0.926530612244898, 0.9193877551020408, 0.9020408163265307, 0.8857142857142857, 0.8387755102040816, 0.7683673469387755, 0.6918367346938775, 0.5816326530612245, 0.41122448979591836, 0.39591836734693875, 0.03775510204081633, 0.03163265306122449, 0.03163265306122449, 0.02959183673469388, 0.030612244897959183, 0.030612244897959183, 0.02959183673469388, 0.027551020408163266, 0.03163265306122449, 0.02857142857142857, 0.02857142857142857, 0.9438775510204082, 0.34183673469387754, 0.3040816326530612, 0.09183673469387756, 0.07551020408163266, 0.02346938775510204, 0.024489795918367346, 0.02346938775510204, 0.02142857142857143, 0.02857142857142857, 0.030612244897959183, 0.027551020408163266, 0.0326530612244898, 0.0326530612244898, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.03163265306122449, 0.03163265306122449, 0.10102040816326531, 0.1, 0.10204081632653061, 0.37857142857142856, 0.9020408163265307, 0.9163265306122449, 0.7173469387755103, 0.3224489795918367, 0.10816326530612246, 0.03877551020408163, 0.03877551020408163, 0.036734693877551024, 0.03571428571428571, 0.03571428571428571, 0.036734693877551024, 0.03571428571428571, 0.8183673469387756, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.03775510204081633, 0.03979591836734694, 0.04591836734693878, 0.05714285714285714, 0.0663265306122449, 0.07346938775510205, 0.0826530612244898, 0.10408163265306122, 0.35306122448979593, 0.3836734693877551, 0.6, 0.8540816326530613, 0.9030612244897959, 0.9122448979591836, 0.926530612244898, 0.9081632653061225, 0.8663265306122448, 0.8051020408163265, 0.5938775510204082, 0.4163265306122449, 0.2897959183673469, 0.2653061224489796, 0.24285714285714285, 0.2357142857142857, 0.23061224489795917, 0.23061224489795917, 0.23265306122448978, 0.23979591836734693, 0.24489795918367346, 0.2479591836734694, 0.2653061224489796, 0.2857142857142857, 0.6561224489795918, 0.6428571428571429, 0.6377551020408163, 0.5846938775510204, 0.8938775510204081, 0.9153061224489796, 0.923469387755102, 0.9244897959183673, 0.9244897959183673, 0.9204081632653062, 0.9061224489795918, 0.8857142857142857, 0.28061224489795916, 0.26224489795918365, 0.2510204081632653, 0.24489795918367346, 0.24387755102040817, 0.24489795918367346, 0.24591836734693878, 0.9408163265306122, 0.8153061224489796, 0.3448979591836735, 0.24897959183673468, 0.2530612244897959, 0.2540816326530612, 0.27346938775510204, 0.27653061224489794, 0.28469387755102044, 0.29081632653061223, 0.28469387755102044, 0.28061224489795916, 0.27653061224489794, 0.2816326530612245, 0.2938775510204082, 0.7683673469387755, 0.29489795918367345, 0.29591836734693877, 0.30714285714285716, 0.2979591836734694, 0.9020408163265307, 0.9153061224489796, 0.9448979591836735, 0.9346938775510204, 0.9112244897959184, 0.8989795918367347, 0.33877551020408164, 0.3438775510204082, 0.34285714285714286, 0.35, 0.8693877551020408, 0.8734693877551021, 0.8755102040816326, 0.8755102040816326, 0.8785714285714286, 0.8816326530612245, 0.8785714285714286, 0.8785714285714286, 0.8755102040816326, 0.8734693877551021, 0.8734693877551021, 0.8693877551020408, 0.37448979591836734, 0.3663265306122449, 0.3663265306122449, 0.376530612244898, 0.39081632653061227, 0.4010204081632653, 0.4663265306122449, 0.6938775510204082, 0.7806122448979592, 0.95], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Staufen_C.gap.json b/pfam_gap_rates/Staufen_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9269abc8d715525d0a209c4697a9dea244cae9a
--- /dev/null
+++ b/pfam_gap_rates/Staufen_C.gap.json
@@ -0,0 +1 @@
+{"family": "Staufen_C", "n_seqs": 110, "length": 124, "gap_rates": [0.7909090909090909, 0.6727272727272727, 0.6454545454545455, 0.6454545454545455, 0.6363636363636364, 0.6363636363636364, 0.6, 0.6, 0.6, 0.6, 0.6, 0.5909090909090909, 0.5909090909090909, 0.5818181818181818, 0.5818181818181818, 0.5818181818181818, 0.5818181818181818, 0.5727272727272728, 0.5636363636363636, 0.5454545454545454, 0.5363636363636364, 0.5363636363636364, 0.5363636363636364, 0.5363636363636364, 0.7090909090909091, 0.5636363636363636, 0.509090909090909, 0.4727272727272727, 0.4636363636363636, 0.43636363636363634, 0.42727272727272725, 0.4090909090909091, 0.38181818181818183, 0.34545454545454546, 0.35454545454545455, 0.3181818181818182, 0.2909090909090909, 0.3090909090909091, 0.7909090909090909, 0.23636363636363636, 0.19090909090909092, 0.2, 0.18181818181818182, 0.9090909090909091, 0.9272727272727272, 0.9363636363636364, 0.9454545454545454, 0.9363636363636364, 0.9272727272727272, 0.9272727272727272, 0.8909090909090909, 0.045454545454545456, 0.03636363636363636, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.01818181818181818, 0.03636363636363636, 0.03636363636363636, 0.06363636363636363, 0.12727272727272726, 0.12727272727272726, 0.8909090909090909, 0.06363636363636363, 0.9363636363636364, 0.08181818181818182, 0.07272727272727272, 0.9363636363636364, 0.7636363636363637, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.12727272727272726, 0.12727272727272726, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.9363636363636364, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.07272727272727272, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.09090909090909091, 0.41818181818181815, 0.4636363636363636, 0.5636363636363636, 0.6090909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Str_synth.gap.json b/pfam_gap_rates/Str_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..023f9e636ddde7acf83dfd6f48c2642db1d20734
--- /dev/null
+++ b/pfam_gap_rates/Str_synth.gap.json
@@ -0,0 +1 @@
+{"family": "Str_synth", "n_seqs": 601, "length": 89, "gap_rates": [0.2512479201331115, 0.2129783693843594, 0.19966722129783693, 0.18801996672212978, 0.14309484193011648, 0.11980033277870217, 0.11314475873544093, 0.09151414309484193, 0.5391014975041597, 0.07986688851913477, 0.07154742096505824, 0.07154742096505824, 0.07154742096505824, 0.07154742096505824, 0.07154742096505824, 0.07154742096505824, 0.06821963394342762, 0.06655574043261231, 0.07321131447587355, 0.06988352745424292, 0.059900166389351084, 0.059900166389351084, 0.05823627287853577, 0.05324459234608985, 0.04991680532445923, 0.04658901830282862, 0.04326123128119801, 0.04326123128119801, 0.03826955074875208, 0.03826955074875208, 0.03161397670549085, 0.03826955074875208, 0.04991680532445923, 0.026622296173044926, 0.024958402662229616, 0.02329450915141431, 0.02329450915141431, 0.02329450915141431, 0.016638935108153077, 0.016638935108153077, 0.016638935108153077, 0.016638935108153077, 0.016638935108153077, 0.016638935108153077, 0.018302828618968387, 0.019966722129783693, 0.024958402662229616, 0.018302828618968387, 0.021630615640599003, 0.03494176372712146, 0.016638935108153077, 0.018302828618968387, 0.018302828618968387, 0.016638935108153077, 0.016638935108153077, 0.016638935108153077, 0.016638935108153077, 0.018302828618968387, 0.018302828618968387, 0.018302828618968387, 0.019966722129783693, 0.019966722129783693, 0.021630615640599003, 0.02329450915141431, 0.02329450915141431, 0.028286189683860232, 0.029950083194675542, 0.03826955074875208, 0.04159733777038269, 0.04492512479201331, 0.04492512479201331, 0.04991680532445923, 0.051580698835274545, 0.04991680532445923, 0.04991680532445923, 0.05324459234608985, 0.05823627287853577, 0.0632279534109817, 0.064891846921797, 0.06655574043261231, 0.07820299500831947, 0.07986688851913477, 0.08652246256239601, 0.11813643926788686, 0.1447587354409318, 0.15973377703826955, 0.18469217970049917, 0.21963394342762063, 0.7520798668885191], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Striatin.gap.json b/pfam_gap_rates/Striatin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..175a931e0272ed7ba046de7482ec19f9440c0262
--- /dev/null
+++ b/pfam_gap_rates/Striatin.gap.json
@@ -0,0 +1 @@
+{"family": "Striatin", "n_seqs": 271, "length": 201, "gap_rates": [0.46863468634686345, 0.1881918819188192, 0.1881918819188192, 0.15129151291512916, 0.13653136531365315, 0.12915129151291513, 0.12915129151291513, 0.12915129151291513, 0.12177121771217712, 0.12177121771217712, 0.11808118081180811, 0.11439114391143912, 0.11439114391143912, 0.11439114391143912, 0.11439114391143912, 0.11070110701107011, 0.11070110701107011, 0.1070110701107011, 0.1070110701107011, 0.1070110701107011, 0.1033210332103321, 0.1033210332103321, 0.1033210332103321, 0.1070110701107011, 0.1033210332103321, 0.1033210332103321, 0.1033210332103321, 0.0996309963099631, 0.0996309963099631, 0.0959409594095941, 0.09225092250922509, 0.06273062730627306, 0.06273062730627306, 0.06642066420664207, 0.06642066420664207, 0.06273062730627306, 0.05904059040590406, 0.05904059040590406, 0.05904059040590406, 0.05904059040590406, 0.05904059040590406, 0.06273062730627306, 0.06642066420664207, 0.06642066420664207, 0.07011070110701106, 0.07380073800738007, 0.07380073800738007, 0.07380073800738007, 0.07011070110701106, 0.07011070110701106, 0.07749077490774908, 0.07380073800738007, 0.07749077490774908, 0.07749077490774908, 0.07749077490774908, 0.07749077490774908, 0.04059040590405904, 0.04059040590405904, 0.04059040590405904, 0.04059040590405904, 0.04059040590405904, 0.04428044280442804, 0.04428044280442804, 0.04797047970479705, 0.055350553505535055, 0.055350553505535055, 0.06273062730627306, 0.07380073800738007, 0.2029520295202952, 0.1881918819188192, 0.19557195571955718, 0.8966789667896679, 0.9114391143911439, 0.922509225092251, 0.9298892988929889, 0.940959409594096, 0.9261992619926199, 0.915129151291513, 0.9040590405904059, 0.8966789667896679, 0.19557195571955718, 0.30996309963099633, 0.948339483394834, 0.23616236162361623, 0.2177121771217712, 0.2066420664206642, 0.14391143911439114, 0.14391143911439114, 0.15129151291512916, 0.25461254612546125, 0.33579335793357934, 0.25092250922509224, 0.1918819188191882, 0.1881918819188192, 0.18081180811808117, 0.19557195571955718, 0.1992619926199262, 0.22140221402214022, 0.2140221402214022, 0.2177121771217712, 0.25830258302583026, 0.3062730627306273, 0.34686346863468637, 0.35424354243542433, 0.3726937269372694, 0.39114391143911437, 0.4317343173431734, 0.5608856088560885, 0.6309963099630996, 0.6199261992619927, 0.5793357933579336, 0.5645756457564576, 0.5461254612546126, 0.47601476014760147, 0.41697416974169743, 0.3837638376383764, 0.35793357933579334, 0.35424354243542433, 0.3726937269372694, 0.3763837638376384, 0.36900369003690037, 0.3948339483394834, 0.45018450184501846, 0.47232472324723246, 0.5350553505535055, 0.6051660516605166, 0.7527675276752768, 0.7047970479704797, 0.7896678966789668, 0.8007380073800738, 0.8228782287822878, 0.8450184501845018, 0.8523985239852399, 0.8560885608856088, 0.8597785977859779, 0.8671586715867159, 0.8782287822878229, 0.8782287822878229, 0.8819188191881919, 0.8856088560885609, 0.9040590405904059, 0.9114391143911439, 0.9114391143911439, 0.922509225092251, 0.933579335793358, 0.9446494464944649, 0.940959409594096, 0.9298892988929889, 0.9188191881918819, 0.9114391143911439, 0.9114391143911439, 0.8929889298892989, 0.8819188191881919, 0.8782287822878229, 0.8782287822878229, 0.8671586715867159, 0.8634686346863468, 0.8597785977859779, 0.8523985239852399, 0.8523985239852399, 0.8376383763837638, 0.8154981549815498, 0.7933579335793358, 0.7896678966789668, 0.5904059040590406, 0.4944649446494465, 0.3985239852398524, 0.3210332103321033, 0.28413284132841327, 0.2693726937269373, 0.23985239852398524, 0.22140221402214022, 0.2140221402214022, 0.2029520295202952, 0.1992619926199262, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.18450184501845018, 0.1881918819188192, 0.1881918819188192, 0.1881918819188192, 0.19557195571955718, 0.19557195571955718, 0.1992619926199262, 0.2140221402214022, 0.25830258302583026, 0.4575645756457565, 0.7601476014760148], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Strumpellin.gap.json b/pfam_gap_rates/Strumpellin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72058a0bb4abf1c9af197dd9cdae386ddf458ddd
--- /dev/null
+++ b/pfam_gap_rates/Strumpellin.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Suf.gap.json b/pfam_gap_rates/Suf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24436d73772dd40daf3b3102e7be5628b0ffbc9a
--- /dev/null
+++ b/pfam_gap_rates/Suf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sulfate_transp.gap.json b/pfam_gap_rates/Sulfate_transp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08884a924ad650499244b88b04def5e7b5540e89
--- /dev/null
+++ b/pfam_gap_rates/Sulfate_transp.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SymE_toxin.gap.json b/pfam_gap_rates/SymE_toxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..754e46d124cd846b94124dadf6580b24bddf2cb0
--- /dev/null
+++ b/pfam_gap_rates/SymE_toxin.gap.json
@@ -0,0 +1 @@
+{"family": "SymE_toxin", "n_seqs": 156, "length": 61, "gap_rates": [0.8461538461538461, 0.7115384615384616, 0.6794871794871795, 0.6666666666666666, 0.6538461538461539, 0.6282051282051282, 0.6089743589743589, 0.5192307692307693, 0.4935897435897436, 0.4230769230769231, 0.40384615384615385, 0.3974358974358974, 0.3974358974358974, 0.42948717948717946, 0.5256410256410257, 0.3717948717948718, 0.7115384615384616, 0.8012820512820513, 0.8269230769230769, 0.8653846153846154, 0.8269230769230769, 0.717948717948718, 0.6602564102564102, 0.5064102564102564, 0.46153846153846156, 0.26282051282051283, 0.10256410256410256, 0.038461538461538464, 0.02564102564102564, 0.01282051282051282, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.08333333333333333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.00641025641025641, 0.01282051282051282, 0.01282051282051282, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.03205128205128205, 0.038461538461538464, 0.07692307692307693, 0.08333333333333333, 0.17307692307692307, 0.6666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Syndecan.gap.json b/pfam_gap_rates/Syndecan.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6093f3d85abed83cc61de1dc06fd84cd654e37f
--- /dev/null
+++ b/pfam_gap_rates/Syndecan.gap.json
@@ -0,0 +1 @@
+{"family": "Syndecan", "n_seqs": 206, "length": 67, "gap_rates": [0.6262135922330098, 0.49029126213592233, 0.49029126213592233, 0.470873786407767, 0.4563106796116505, 0.42718446601941745, 0.42718446601941745, 0.4223300970873786, 0.4029126213592233, 0.07766990291262135, 0.038834951456310676, 0.03398058252427184, 0.02912621359223301, 0.024271844660194174, 0.024271844660194174, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.009708737864077669, 0.009708737864077669, 0.0048543689320388345, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.024271844660194174, 0.024271844660194174, 0.024271844660194174, 0.024271844660194174, 0.02912621359223301, 0.5825242718446602, 0.8592233009708737, 0.5728155339805825, 0.2815533980582524, 0.47572815533980584, 0.4854368932038835, 0.49514563106796117, 0.39805825242718446, 0.5776699029126213, 0.4077669902912621, 0.4174757281553398, 0.4174757281553398, 0.4174757281553398, 0.4223300970873786, 0.8398058252427184, 0.8058252427184466, 0.4223300970873786, 0.441747572815534], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Syntaxin-6_N.gap.json b/pfam_gap_rates/Syntaxin-6_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..847d79676c4ddb0ac42ef2cb409f73aca0fae383
--- /dev/null
+++ b/pfam_gap_rates/Syntaxin-6_N.gap.json
@@ -0,0 +1 @@
+{"family": "Syntaxin-6_N", "n_seqs": 378, "length": 108, "gap_rates": [0.1349206349206349, 0.12433862433862433, 0.11904761904761904, 0.11904761904761904, 0.11375661375661375, 0.10846560846560846, 0.10317460317460317, 0.07671957671957672, 0.06613756613756613, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.05555555555555555, 0.04497354497354497, 0.03968253968253968, 0.042328042328042326, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.03439153439153439, 0.03439153439153439, 0.037037037037037035, 0.9391534391534392, 0.03968253968253968, 0.042328042328042326, 0.11375661375661375, 0.11904761904761904, 0.11375661375661375, 0.1349206349206349, 0.25396825396825395, 0.3253968253968254, 0.3333333333333333, 0.9470899470899471, 0.8835978835978836, 0.2962962962962963, 0.9312169312169312, 0.9417989417989417, 0.9497354497354498, 0.9365079365079365, 0.9312169312169312, 0.2804232804232804, 0.04497354497354497, 0.037037037037037035, 0.021164021164021163, 0.018518518518518517, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.013227513227513227, 0.013227513227513227, 0.013227513227513227, 0.018518518518518517, 0.021164021164021163, 0.021164021164021163, 0.026455026455026454, 0.0291005291005291, 0.0291005291005291, 0.0291005291005291, 0.023809523809523808, 0.018518518518518517, 0.018518518518518517, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.026455026455026454, 0.1349206349206349, 0.12698412698412698, 0.13227513227513227, 0.08994708994708994, 0.06084656084656084, 0.1111111111111111, 0.08465608465608465, 0.06084656084656084, 0.05026455026455026, 0.8809523809523809, 0.047619047619047616, 0.04497354497354497, 0.04497354497354497, 0.04497354497354497, 0.047619047619047616, 0.05291005291005291, 0.05291005291005291, 0.05291005291005291, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.06084656084656084, 0.06084656084656084, 0.07407407407407407, 0.08465608465608465, 0.10846560846560846, 0.13227513227513227, 0.20105820105820105, 0.5079365079365079], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T2SSE.gap.json b/pfam_gap_rates/T2SSE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d30f57558eabcb2b25f3c25e4983161ecc5d5f50
--- /dev/null
+++ b/pfam_gap_rates/T2SSE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/T2SSN.gap.json b/pfam_gap_rates/T2SSN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c73adc55ffe73d3a402d2e1860f0c43c12f9d99f
--- /dev/null
+++ b/pfam_gap_rates/T2SSN.gap.json
@@ -0,0 +1 @@
+{"family": "T2SSN", "n_seqs": 171, "length": 245, "gap_rates": [0.8830409356725146, 0.4502923976608187, 0.14035087719298245, 0.06432748538011696, 0.03508771929824561, 0.029239766081871343, 0.029239766081871343, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.03508771929824561, 0.023391812865497075, 0.7192982456140351, 0.07017543859649122, 0.07602339181286549, 0.935672514619883, 0.9298245614035088, 0.06432748538011696, 0.029239766081871343, 0.029239766081871343, 0.03508771929824561, 0.7309941520467836, 0.04678362573099415, 0.03508771929824561, 0.029239766081871343, 0.6374269005847953, 0.7017543859649122, 0.8888888888888888, 0.7368421052631579, 0.6432748538011696, 0.631578947368421, 0.023391812865497075, 0.023391812865497075, 0.017543859649122806, 0.017543859649122806, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 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\ No newline at end of file
diff --git a/pfam_gap_rates/T6SS_VasE.gap.json b/pfam_gap_rates/T6SS_VasE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ea286e44b5129f7ba63e5ea5f25fa65b5b7b1ed
--- /dev/null
+++ b/pfam_gap_rates/T6SS_VasE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TAF6_C.gap.json b/pfam_gap_rates/TAF6_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f7d9b00963981991113a02e663bffc80283294f
--- /dev/null
+++ b/pfam_gap_rates/TAF6_C.gap.json
@@ -0,0 +1 @@
+{"family": "TAF6_C", "n_seqs": 356, "length": 115, "gap_rates": [0.3342696629213483, 0.14887640449438203, 0.13764044943820225, 0.13202247191011235, 0.12078651685393259, 0.11797752808988764, 0.11235955056179775, 0.10955056179775281, 0.10955056179775281, 0.10674157303370786, 0.1853932584269663, 0.17415730337078653, 0.3848314606741573, 0.7921348314606742, 0.8735955056179775, 0.8876404494382022, 0.9157303370786517, 0.9213483146067416, 0.9466292134831461, 0.949438202247191, 0.9382022471910112, 0.9157303370786517, 0.9044943820224719, 0.8792134831460674, 0.8258426966292135, 0.7808988764044944, 0.14606741573033707, 0.09269662921348315, 0.0898876404494382, 0.08146067415730338, 0.06741573033707865, 0.042134831460674156, 0.949438202247191, 0.025280898876404494, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.02247191011235955, 0.019662921348314606, 0.019662921348314606, 0.014044943820224719, 0.019662921348314606, 0.02247191011235955, 0.028089887640449437, 0.03651685393258427, 0.07584269662921349, 0.05898876404494382, 0.028089887640449437, 0.025280898876404494, 0.025280898876404494, 0.028089887640449437, 0.028089887640449437, 0.028089887640449437, 0.025280898876404494, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.025280898876404494, 0.028089887640449437, 0.9269662921348315, 0.9269662921348315, 0.9325842696629213, 0.9382022471910112, 0.9410112359550562, 0.9353932584269663, 0.9297752808988764, 0.9269662921348315, 0.9269662921348315, 0.042134831460674156, 0.03651685393258427, 0.03932584269662921, 0.9438202247191011, 0.03089887640449438, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.033707865168539325, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03932584269662921, 0.03932584269662921, 0.042134831460674156, 0.047752808988764044, 0.047752808988764044, 0.8202247191011236, 0.05898876404494382, 0.06460674157303371, 0.06741573033707865, 0.07303370786516854, 0.08426966292134831, 0.0898876404494382, 0.09269662921348315, 0.09269662921348315, 0.09550561797752809, 0.1404494382022472, 0.17134831460674158, 0.21629213483146068, 0.26685393258426965, 0.6938202247191011], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TAP_C.gap.json b/pfam_gap_rates/TAP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3559ae255f57575b9389766f64d60c96f09c5b61
--- /dev/null
+++ b/pfam_gap_rates/TAP_C.gap.json
@@ -0,0 +1 @@
+{"family": "TAP_C", "n_seqs": 282, "length": 49, "gap_rates": [0.5673758865248227, 0.1595744680851064, 0.12056737588652482, 0.04609929078014184, 0.031914893617021274, 0.010638297872340425, 0.0070921985815602835, 0.0070921985815602835, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035460992907801418, 0.0035460992907801418, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.010638297872340425, 0.01773049645390071, 0.02127659574468085, 0.024822695035460994, 0.44680851063829785, 0.44680851063829785, 0.06028368794326241, 0.0673758865248227, 0.06382978723404255, 0.06382978723404255, 0.0673758865248227, 0.07446808510638298, 0.09219858156028368, 0.09929078014184398], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TBCC.gap.json b/pfam_gap_rates/TBCC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3043b15c41d2ab56257822c79c333af75c0eb0f9
--- /dev/null
+++ b/pfam_gap_rates/TBCC.gap.json
@@ -0,0 +1 @@
+{"family": "TBCC", "n_seqs": 622, "length": 127, "gap_rates": [0.8086816720257235, 0.5192926045016077, 0.2765273311897106, 0.1945337620578778, 0.1639871382636656, 0.1527331189710611, 0.14469453376205788, 0.13344051446945338, 0.1270096463022508, 0.12057877813504823, 0.11736334405144695, 0.1157556270096463, 0.11414790996784566, 0.10128617363344052, 0.09967845659163987, 0.09485530546623794, 0.8360128617363344, 0.860128617363344, 0.8842443729903537, 0.8713826366559485, 0.8488745980707395, 0.819935691318328, 0.09163987138263666, 0.07395498392282958, 0.06913183279742766, 0.06109324758842444, 0.04983922829581994, 0.04180064308681672, 0.03697749196141479, 0.03697749196141479, 0.03697749196141479, 0.03376205787781351, 0.03215434083601286, 0.03215434083601286, 0.03215434083601286, 0.03215434083601286, 0.028938906752411574, 0.03054662379421222, 0.03054662379421222, 0.03215434083601286, 0.03376205787781351, 0.04180064308681672, 0.03858520900321544, 0.03697749196141479, 0.03376205787781351, 0.03215434083601286, 0.03376205787781351, 0.03054662379421222, 0.03536977491961415, 0.03215434083601286, 0.027331189710610933, 0.028938906752411574, 0.02572347266881029, 0.02572347266881029, 0.024115755627009645, 0.022508038585209004, 0.024115755627009645, 0.024115755627009645, 0.024115755627009645, 0.024115755627009645, 0.02572347266881029, 0.02572347266881029, 0.02572347266881029, 0.024115755627009645, 0.027331189710610933, 0.02572347266881029, 0.027331189710610933, 0.027331189710610933, 0.028938906752411574, 0.03376205787781351, 0.03376205787781351, 0.03376205787781351, 0.03376205787781351, 0.03376205787781351, 0.03376205787781351, 0.03376205787781351, 0.03215434083601286, 0.03376205787781351, 0.03215434083601286, 0.03215434083601286, 0.03215434083601286, 0.027331189710610933, 0.028938906752411574, 0.027331189710610933, 0.027331189710610933, 0.7572347266881029, 0.04019292604501608, 0.04180064308681672, 0.04340836012861737, 0.04501607717041801, 0.04340836012861737, 0.04501607717041801, 0.04662379421221865, 0.04823151125401929, 0.04823151125401929, 0.0594855305466238, 0.07717041800643087, 0.08360128617363344, 0.10128617363344052, 0.1157556270096463, 0.14790996784565916, 0.1720257234726688, 0.1720257234726688, 0.18006430868167203, 0.2202572347266881, 0.3167202572347267, 0.3295819935691318, 0.32636655948553056, 0.3327974276527331, 0.3247588424437299, 0.3183279742765273, 0.3054662379421222, 0.2717041800643087, 0.2604501607717042, 0.27009646302250806, 0.3633440514469453, 0.3070739549839228, 0.3022508038585209, 0.3135048231511254, 0.8279742765273312, 0.3247588424437299, 0.3311897106109325, 0.3536977491961415, 0.4903536977491961, 0.5016077170418006, 0.5048231511254019, 0.5144694533762058], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFCD_C.gap.json b/pfam_gap_rates/TFCD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37bd93cd68e66a35e40c1d7331f3c14963868d4d
--- /dev/null
+++ b/pfam_gap_rates/TFCD_C.gap.json
@@ -0,0 +1 @@
+{"family": "TFCD_C", "n_seqs": 314, "length": 207, "gap_rates": [0.8089171974522293, 0.4012738853503185, 0.27388535031847133, 0.24203821656050956, 0.21337579617834396, 0.19745222929936307, 0.18471337579617833, 0.18471337579617833, 0.18471337579617833, 0.18471337579617833, 0.18471337579617833, 0.18152866242038215, 0.18152866242038215, 0.18152866242038215, 0.18152866242038215, 0.18152866242038215, 0.18152866242038215, 0.16878980891719744, 0.1592356687898089, 0.13694267515923567, 0.13694267515923567, 0.13694267515923567, 0.13694267515923567, 0.13694267515923567, 0.13694267515923567, 0.13694267515923567, 0.13694267515923567, 0.13694267515923567, 0.1178343949044586, 0.1178343949044586, 0.11464968152866242, 0.11464968152866242, 0.12101910828025478, 0.19745222929936307, 0.20063694267515925, 0.8089171974522293, 0.856687898089172, 0.9171974522292994, 0.8853503184713376, 0.8280254777070064, 0.7993630573248408, 0.4171974522292994, 0.42356687898089174, 0.15286624203821655, 0.12420382165605096, 0.1178343949044586, 0.11464968152866242, 0.10509554140127389, 0.10509554140127389, 0.10509554140127389, 0.10191082802547771, 0.10191082802547771, 0.9394904458598726, 0.12101910828025478, 0.12101910828025478, 0.12420382165605096, 0.12738853503184713, 0.12420382165605096, 0.16560509554140126, 0.14968152866242038, 0.8726114649681529, 0.9044585987261147, 0.7038216560509554, 0.6050955414012739, 0.43312101910828027, 0.29936305732484075, 0.18471337579617833, 0.17834394904458598, 0.16878980891719744, 0.1592356687898089, 0.10509554140127389, 0.08598726114649681, 0.08280254777070063, 0.08917197452229299, 0.06687898089171974, 0.06687898089171974, 0.06687898089171974, 0.0732484076433121, 0.06687898089171974, 0.06687898089171974, 0.06369426751592357, 0.06687898089171974, 0.08598726114649681, 0.07643312101910828, 0.07643312101910828, 0.9394904458598726, 0.9299363057324841, 0.06687898089171974, 0.06050955414012739, 0.05732484076433121, 0.054140127388535034, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.054140127388535034, 0.054140127388535034, 0.050955414012738856, 0.050955414012738856, 0.06050955414012739, 0.050955414012738856, 0.054140127388535034, 0.05732484076433121, 0.05732484076433121, 0.06050955414012739, 0.10191082802547771, 0.10509554140127389, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.1305732484076433, 0.1305732484076433, 0.12738853503184713, 0.1337579617834395, 0.13694267515923567, 0.1305732484076433, 0.3535031847133758, 0.37579617834394907, 0.39171974522292996, 0.3980891719745223, 0.35987261146496813, 0.7898089171974523, 0.9426751592356688, 0.8248407643312102, 0.7452229299363057, 0.42038216560509556, 0.35987261146496813, 0.16560509554140126, 0.14968152866242038, 0.14012738853503184, 0.14331210191082802, 0.1464968152866242, 0.1464968152866242, 0.14331210191082802, 0.14331210191082802, 0.14331210191082802, 0.14331210191082802, 0.1464968152866242, 0.14968152866242038, 0.1464968152866242, 0.14331210191082802, 0.14331210191082802, 0.14331210191082802, 0.16560509554140126, 0.1624203821656051, 0.15605095541401273, 0.15605095541401273, 0.14968152866242038, 0.15286624203821655, 0.15605095541401273, 0.15605095541401273, 0.15605095541401273, 0.15605095541401273, 0.15605095541401273, 0.1592356687898089, 0.1592356687898089, 0.1592356687898089, 0.1592356687898089, 0.1592356687898089, 0.16878980891719744, 0.17197452229299362, 0.1751592356687898, 0.1751592356687898, 0.1751592356687898, 0.17834394904458598, 0.18152866242038215, 0.1910828025477707, 0.1910828025477707, 0.18789808917197454, 0.20382165605095542, 0.1910828025477707, 0.20382165605095542, 0.20382165605095542, 0.2070063694267516, 0.21337579617834396, 0.23885350318471338, 0.5254777070063694, 0.821656050955414, 0.9394904458598726, 0.678343949044586, 0.4840764331210191, 0.43312101910828027, 0.2643312101910828, 0.2611464968152866, 0.2611464968152866, 0.24522292993630573, 0.24522292993630573, 0.24522292993630573, 0.2484076433121019, 0.2515923566878981, 0.25796178343949044, 0.27070063694267515, 0.2770700636942675, 0.2802547770700637, 0.28662420382165604, 0.30254777070063693, 0.31528662420382164, 0.3343949044585987, 0.3821656050955414, 0.4299363057324841, 0.44904458598726116, 0.48089171974522293], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIF_alpha.gap.json b/pfam_gap_rates/TFIIF_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a7a30f4ba107136c652049e8a532ba612365bb3
--- /dev/null
+++ b/pfam_gap_rates/TFIIF_alpha.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIF_beta.gap.json b/pfam_gap_rates/TFIIF_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8651ae0c693e6d6240aa400c5131a36b9a6eec6
--- /dev/null
+++ b/pfam_gap_rates/TFIIF_beta.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TIM.gap.json b/pfam_gap_rates/TIM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68df961172d168ed17ab52ef3bfe86a3168962ba
--- /dev/null
+++ b/pfam_gap_rates/TIM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TIMELESS_C.gap.json b/pfam_gap_rates/TIMELESS_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8eeb50492d6bf6224ee3b4135cb946c7ce1973f2
--- /dev/null
+++ b/pfam_gap_rates/TIMELESS_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TIR_2.gap.json b/pfam_gap_rates/TIR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5469c7cf009bbf16a8c753a3854ebe85e0892570
--- /dev/null
+++ b/pfam_gap_rates/TIR_2.gap.json
@@ -0,0 +1 @@
+{"family": "TIR_2", "n_seqs": 1834, "length": 144, "gap_rates": [0.3222464558342421, 0.10905125408942203, 0.09596510359869138, 0.09051254089422028, 0.08778625954198473, 0.0866957470010905, 0.0812431842966194, 0.07633587786259542, 0.07360959651035986, 0.8260632497273719, 0.06815703380588876, 0.06270447110141766, 0.9176663031624863, 0.05779716466739367, 0.05561613958560523, 0.05179934569247546, 0.04471101417666303, 0.04198473282442748, 0.03980370774263904, 0.03653217011995638, 0.03489640130861505, 0.03380588876772083, 0.9214830970556162, 0.9231188658669575, 0.9182115594329335, 0.04089422028353326, 0.03707742639040349, 0.9149400218102508, 0.8980370774263904, 0.03162486368593239, 0.9416575790621592, 0.029443838604143947, 0.029443838604143947, 0.9498364231188658, 0.8729552889858233, 0.026717557251908396, 0.023991275899672846, 0.023991275899672846, 0.022355507088331516, 0.022900763358778626, 0.9051254089422028, 0.9427480916030534, 0.683206106870229, 0.021810250817884406, 0.559432933478735, 0.022900763358778626, 0.021264994547437296, 0.017993456924754635, 0.07633587786259542, 0.06652126499454744, 0.04689203925845147, 0.10359869138495092, 0.04634678298800436, 0.05616139585605234, 0.009814612868047983, 0.008724100327153763, 0.007088331515812432, 0.004362050163576881, 0.004907306434023991, 0.0059978189749182115, 0.003271537622682661, 0.0021810250817884407, 0.0027262813522355507, 0.004362050163576881, 0.004362050163576881, 0.0054525627044711015, 0.0054525627044711015, 0.0059978189749182115, 0.0054525627044711015, 0.0054525627044711015, 0.007088331515812432, 0.007088331515812432, 0.007088331515812432, 0.007088331515812432, 0.008724100327153763, 0.009814612868047983, 0.009814612868047983, 0.023446019629225736, 0.8805888767720829, 0.8931297709923665, 0.9111232279171211, 0.9231188658669575, 0.9138495092693566, 0.9040348964013086, 0.886041439476554, 0.8751363140676118, 0.012540894220283533, 0.9471101417666303, 0.010905125408942203, 0.010905125408942203, 0.010905125408942203, 0.012540894220283533, 0.9362050163576882, 0.014721919302071973, 0.015812431842966195, 0.017993456924754635, 0.020174482006543076, 0.020719738276990186, 0.7300981461286805, 0.8287895310796074, 0.8882224645583424, 0.7644492911668485, 0.7110141766630316, 0.024536532170119956, 0.04089422028353326, 0.8396946564885496, 0.8893129770992366, 0.9133042529989095, 0.861504907306434, 0.8146128680479825, 0.03707742639040349, 0.04743729552889858, 0.04743729552889858, 0.8282442748091603, 0.10905125408942203, 0.05179934569247546, 0.05561613958560523, 0.06052344601962922, 0.06543075245365322, 0.07306434023991276, 0.9280261723009815, 0.916030534351145, 0.12595419847328243, 0.14231188658669575, 0.17448200654307525, 0.21264994547437296, 0.8751363140676118, 0.9476553980370774, 0.9002181025081788, 0.8053435114503816, 0.2628135223555071, 0.29116684841875684, 0.9280261723009815, 0.33533260632497275, 0.3669574700109051, 0.435659760087241, 0.4792802617230098, 0.509814612868048, 0.5567066521264995, 0.5997818974918212, 0.6652126499454744, 0.7366412213740458, 0.7982551799345693, 0.8827699018538713], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TLE_N.gap.json b/pfam_gap_rates/TLE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df563a4e0e27aed35789935040d16a31549e69b8
--- /dev/null
+++ b/pfam_gap_rates/TLE_N.gap.json
@@ -0,0 +1 @@
+{"family": "TLE_N", "n_seqs": 217, "length": 142, "gap_rates": [0.6820276497695853, 0.6682027649769585, 0.6451612903225806, 0.6405529953917051, 0.6175115207373272, 0.7188940092165899, 0.7972350230414746, 0.6774193548387096, 0.5345622119815668, 0.48847926267281105, 0.4377880184331797, 0.41935483870967744, 0.511520737327189, 0.3640552995391705, 0.3456221198156682, 0.34101382488479265, 0.33640552995391704, 0.31336405529953915, 0.29493087557603687, 0.29493087557603687, 0.2903225806451613, 0.2764976958525346, 0.271889400921659, 0.271889400921659, 0.271889400921659, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.2672811059907834, 0.271889400921659, 0.2672811059907834, 0.2488479262672811, 0.22119815668202766, 0.2350230414746544, 0.2350230414746544, 0.22580645161290322, 0.22580645161290322, 0.22580645161290322, 0.22580645161290322, 0.22580645161290322, 0.22580645161290322, 0.22119815668202766, 0.22119815668202766, 0.22119815668202766, 0.22119815668202766, 0.22119815668202766, 0.22119815668202766, 0.21658986175115208, 0.21658986175115208, 0.22119815668202766, 0.2119815668202765, 0.2119815668202765, 0.20276497695852536, 0.2073732718894009, 0.21658986175115208, 0.2304147465437788, 0.22580645161290322, 0.1889400921658986, 0.19815668202764977, 0.19815668202764977, 0.19815668202764977, 0.19815668202764977, 0.19815668202764977, 0.19815668202764977, 0.19815668202764977, 0.1889400921658986, 0.17972350230414746, 0.16129032258064516, 0.14285714285714285, 0.12442396313364056, 0.14746543778801843, 0.15207373271889402, 0.15668202764976957, 0.15668202764976957, 0.15668202764976957, 0.15668202764976957, 0.15668202764976957, 0.16129032258064516, 0.16589861751152074, 0.16589861751152074, 0.16589861751152074, 0.17050691244239632, 0.17050691244239632, 0.17050691244239632, 0.17511520737327188, 0.17511520737327188, 0.17050691244239632, 0.16589861751152074, 0.16129032258064516, 0.1382488479262673, 0.1336405529953917, 0.14746543778801843, 0.14746543778801843, 0.15207373271889402, 0.15207373271889402, 0.15207373271889402, 0.15668202764976957, 0.16129032258064516, 0.16129032258064516, 0.16589861751152074, 0.16589861751152074, 0.16589861751152074, 0.16589861751152074, 0.17050691244239632, 0.17050691244239632, 0.17511520737327188, 0.17511520737327188, 0.17972350230414746, 0.17972350230414746, 0.17972350230414746, 0.18433179723502305, 0.1889400921658986, 0.1889400921658986, 0.20276497695852536, 0.2764976958525346, 0.9170506912442397, 0.9354838709677419, 0.9354838709677419, 0.9354838709677419, 0.9354838709677419, 0.9354838709677419, 0.9354838709677419, 0.9308755760368663, 0.9032258064516129, 0.4147465437788018, 0.28110599078341014, 0.29493087557603687, 0.2995391705069124, 0.33640552995391704, 0.4009216589861751, 0.48847926267281105, 0.5299539170506913, 0.6267281105990783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM144.gap.json b/pfam_gap_rates/TMEM144.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82d3dd520b8ef003359ff904f7aed0194138a74f
--- /dev/null
+++ b/pfam_gap_rates/TMEM144.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM151.gap.json b/pfam_gap_rates/TMEM151.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6fe372d00709cc74680b27b43f02db591fee71c6
--- /dev/null
+++ b/pfam_gap_rates/TMEM151.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM234.gap.json b/pfam_gap_rates/TMEM234.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2a90ff2abe58d8157be19d9ab9016c4e382df3d
--- /dev/null
+++ b/pfam_gap_rates/TMEM234.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM234", "n_seqs": 191, "length": 135, "gap_rates": [0.23036649214659685, 0.17801047120418848, 0.16753926701570682, 0.16230366492146597, 0.15706806282722513, 0.15706806282722513, 0.14659685863874344, 0.14659685863874344, 0.14659685863874344, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.13089005235602094, 0.1256544502617801, 0.1256544502617801, 0.1256544502617801, 0.1256544502617801, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.12041884816753927, 0.1256544502617801, 0.1256544502617801, 0.1256544502617801, 0.1256544502617801, 0.13089005235602094, 0.17277486910994763, 0.28272251308900526, 0.2513089005235602, 0.23036649214659685, 0.8481675392670157, 0.93717277486911, 0.8795811518324608, 0.774869109947644, 0.225130890052356, 0.18848167539267016, 0.7539267015706806, 0.1256544502617801, 0.1099476439790576, 0.1099476439790576, 0.12041884816753927, 0.11518324607329843, 0.1099476439790576, 0.07853403141361257, 0.5968586387434555, 0.612565445026178, 0.6387434554973822, 0.6649214659685864, 0.8429319371727748, 0.8638743455497382, 0.9424083769633508, 0.8848167539267016, 0.8534031413612565, 0.675392670157068, 0.6387434554973822, 0.6282722513089005, 0.5968586387434555, 0.5916230366492147, 0.07329842931937172, 0.06806282722513089, 0.06806282722513089, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.03664921465968586, 0.031413612565445025, 0.020942408376963352, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.03664921465968586, 0.03664921465968586, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.02617801047120419, 0.031413612565445025, 0.031413612565445025, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.031413612565445025, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05759162303664921, 0.06806282722513089, 0.07329842931937172, 0.05759162303664921, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05235602094240838, 0.05759162303664921, 0.05759162303664921, 0.06282722513089005, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.07853403141361257, 0.07853403141361257, 0.07853403141361257, 0.09424083769633508, 0.08900523560209424, 0.1099476439790576, 0.13612565445026178, 0.15706806282722513, 0.16230366492146597, 0.16753926701570682, 0.18324607329842932, 0.20418848167539266, 0.20418848167539266, 0.20418848167539266, 0.21465968586387435, 0.21465968586387435, 0.21465968586387435, 0.21465968586387435, 0.2198952879581152, 0.225130890052356, 0.2356020942408377, 0.2774869109947644, 0.4397905759162304], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMF_DNA_bd.gap.json b/pfam_gap_rates/TMF_DNA_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9528b1bd290196a84451ebfdd6dbf5551449d361
--- /dev/null
+++ b/pfam_gap_rates/TMF_DNA_bd.gap.json
@@ -0,0 +1 @@
+{"family": "TMF_DNA_bd", "n_seqs": 182, "length": 74, "gap_rates": [0.7252747252747253, 0.25274725274725274, 0.1813186813186813, 0.13186813186813187, 0.08791208791208792, 0.07142857142857142, 0.07142857142857142, 0.027472527472527472, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.016483516483516484, 0.01098901098901099, 0.01098901098901099, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005494505494505495, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.02197802197802198, 0.016483516483516484, 0.02197802197802198, 0.027472527472527472, 0.03296703296703297, 0.038461538461538464, 0.04395604395604396, 0.04945054945054945, 0.04945054945054945, 0.054945054945054944, 0.07142857142857142, 0.0989010989010989, 0.14285714285714285, 0.19230769230769232, 0.25824175824175827, 0.4725274725274725], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMF_TATA_bd.gap.json b/pfam_gap_rates/TMF_TATA_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..826e8df2a510a0f59fabe4835b7009cb4b2ed656
--- /dev/null
+++ b/pfam_gap_rates/TMF_TATA_bd.gap.json
@@ -0,0 +1 @@
+{"family": "TMF_TATA_bd", "n_seqs": 217, "length": 114, "gap_rates": [0.6912442396313364, 0.6221198156682027, 0.543778801843318, 0.4608294930875576, 0.3778801843317972, 0.3317972350230415, 0.2903225806451613, 0.2534562211981567, 0.23963133640552994, 0.2119815668202765, 0.19815668202764977, 0.17972350230414746, 0.14746543778801843, 0.1382488479262673, 0.12903225806451613, 0.11981566820276497, 0.1152073732718894, 0.11059907834101383, 0.10599078341013825, 0.10599078341013825, 0.10138248847926268, 0.10138248847926268, 0.10138248847926268, 0.10138248847926268, 0.10138248847926268, 0.10138248847926268, 0.09216589861751152, 0.07834101382488479, 0.06451612903225806, 0.055299539170506916, 0.05069124423963134, 0.04608294930875576, 0.041474654377880185, 0.041474654377880185, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.027649769585253458, 0.018433179723502304, 0.02304147465437788, 0.027649769585253458, 0.027649769585253458, 0.02304147465437788, 0.018433179723502304, 0.013824884792626729, 0.013824884792626729, 0.02304147465437788, 0.02304147465437788, 0.018433179723502304, 0.013824884792626729, 0.018433179723502304, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.03225806451612903, 0.03225806451612903, 0.03686635944700461, 0.027649769585253458, 0.009216589861751152, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.009216589861751152, 0.009216589861751152, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.018433179723502304, 0.018433179723502304, 0.027649769585253458, 0.027649769585253458, 0.055299539170506916, 0.1152073732718894, 0.17511520737327188, 0.4470046082949309], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TNFR_c6.gap.json b/pfam_gap_rates/TNFR_c6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44951ceb327840f41c6393142dd8ac6ac6faf507
--- /dev/null
+++ b/pfam_gap_rates/TNFR_c6.gap.json
@@ -0,0 +1 @@
+{"family": "TNFR_c6", "n_seqs": 1019, "length": 49, "gap_rates": [0.13738959764474976, 0.13150147203140333, 0.1197252208047105, 0.11579980372914622, 0.9244357212953876, 0.10206084396467124, 0.09813542688910697, 0.9479882237487733, 0.9214916584887144, 0.10598626104023552, 0.10206084396467124, 0.09911678115799803, 0.09813542688910697, 0.11285574092247301, 0.13738959764474976, 0.1324828263002944, 0.5436702649656526, 0.3366045142296369, 0.9421000981354269, 0.9106967615309126, 0.020608439646712464, 0.04808635917566242, 0.04416094210009813, 0.001962708537782139, 0.002944062806673209, 0.0009813542688910696, 0.8822374877330716, 0.0, 0.9391560353287537, 0.019627085377821395, 0.004906771344455349, 0.914622178606477, 0.8321884200196271, 0.001962708537782139, 0.001962708537782139, 0.002944062806673209, 0.003925417075564278, 0.02747791952894995, 0.0009813542688910696, 0.0009813542688910696, 0.0009813542688910696, 0.0009813542688910696, 0.007850834151128557, 0.010794896957801767, 0.012757605495583905, 0.012757605495583905, 0.014720314033366046, 0.015701668302257114, 0.015701668302257114], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TOC159_MAD.gap.json b/pfam_gap_rates/TOC159_MAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6923be6b5af42f922bbee2312491ab24babbf93c
--- /dev/null
+++ b/pfam_gap_rates/TOC159_MAD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TOM13.gap.json b/pfam_gap_rates/TOM13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d2b84bc61ba37758f195422a226913d230127ac
--- /dev/null
+++ b/pfam_gap_rates/TOM13.gap.json
@@ -0,0 +1 @@
+{"family": "TOM13", "n_seqs": 114, "length": 87, "gap_rates": [0.9473684210526315, 0.5614035087719298, 0.5087719298245614, 0.49122807017543857, 0.4824561403508772, 0.4824561403508772, 0.4824561403508772, 0.47368421052631576, 0.4649122807017544, 0.7894736842105263, 0.7894736842105263, 0.7807017543859649, 0.4473684210526316, 0.4298245614035088, 0.39473684210526316, 0.40350877192982454, 0.5701754385964912, 0.42105263157894735, 0.38596491228070173, 0.3684210526315789, 0.3684210526315789, 0.35964912280701755, 0.3508771929824561, 0.3508771929824561, 0.3508771929824561, 0.3684210526315789, 0.3684210526315789, 0.9210526315789473, 0.35964912280701755, 0.35964912280701755, 0.3333333333333333, 0.2807017543859649, 0.2631578947368421, 0.23684210526315788, 0.21052631578947367, 0.14912280701754385, 0.06140350877192982, 0.05263157894736842, 0.043859649122807015, 0.03508771929824561, 0.02631578947368421, 0.017543859649122806, 0.017543859649122806, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008771929824561403, 0.02631578947368421, 0.05263157894736842, 0.10526315789473684, 0.10526315789473684, 0.9298245614035088, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.9473684210526315, 0.17543859649122806, 0.21052631578947367, 0.22807017543859648, 0.2631578947368421, 0.35964912280701755, 0.40350877192982454, 0.41228070175438597, 0.4298245614035088, 0.45614035087719296, 0.47368421052631576], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TOM20_plant.gap.json b/pfam_gap_rates/TOM20_plant.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..864a56e23c2fc481139319516c1c1349c81b30ba
--- /dev/null
+++ b/pfam_gap_rates/TOM20_plant.gap.json
@@ -0,0 +1 @@
+{"family": "TOM20_plant", "n_seqs": 147, "length": 198, "gap_rates": [0.7755102040816326, 0.6258503401360545, 0.6122448979591837, 0.5986394557823129, 0.5782312925170068, 0.5102040816326531, 0.46938775510204084, 0.4421768707482993, 0.47619047619047616, 0.41496598639455784, 0.40816326530612246, 0.3741496598639456, 0.38095238095238093, 0.35374149659863946, 0.36054421768707484, 0.3197278911564626, 0.2789115646258503, 0.272108843537415, 0.2653061224489796, 0.25170068027210885, 0.23129251700680273, 0.22448979591836735, 0.21768707482993196, 0.2108843537414966, 0.20408163265306123, 0.1292517006802721, 0.11564625850340136, 0.09523809523809523, 0.08843537414965986, 0.08843537414965986, 0.08163265306122448, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.08163265306122448, 0.08843537414965986, 0.8979591836734694, 0.9251700680272109, 0.8979591836734694, 0.8979591836734694, 0.06802721088435375, 0.07482993197278912, 0.09523809523809523, 0.08843537414965986, 0.06802721088435375, 0.061224489795918366, 0.06802721088435375, 0.061224489795918366, 0.047619047619047616, 0.047619047619047616, 0.061224489795918366, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.06802721088435375, 0.06802721088435375, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.08163265306122448, 0.11564625850340136, 0.1292517006802721, 0.1360544217687075, 0.14965986394557823, 0.14965986394557823, 0.1564625850340136, 0.1836734693877551, 0.1564625850340136, 0.1564625850340136, 0.16326530612244897, 0.9455782312925171, 0.9455782312925171, 0.9455782312925171, 0.9387755102040817, 0.1564625850340136, 0.19047619047619047, 0.17687074829931973, 0.17687074829931973, 0.1836734693877551, 0.17687074829931973, 0.19047619047619047, 0.1836734693877551, 0.1836734693877551, 0.1836734693877551, 0.17687074829931973, 0.17687074829931973, 0.17687074829931973, 0.17687074829931973, 0.1836734693877551, 0.1836734693877551, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19727891156462585, 0.22448979591836735, 0.3401360544217687, 0.3469387755102041, 0.3469387755102041, 0.38095238095238093, 0.3877551020408163, 0.3945578231292517, 0.4013605442176871, 0.41496598639455784, 0.4217687074829932, 0.4217687074829932, 0.4217687074829932, 0.4489795918367347, 0.4897959183673469, 0.564625850340136, 0.564625850340136, 0.5782312925170068, 0.5850340136054422, 0.5986394557823129, 0.5986394557823129, 0.6054421768707483, 0.6054421768707483, 0.6122448979591837, 0.6258503401360545, 0.6258503401360545, 0.6258503401360545, 0.6326530612244898, 0.6394557823129252, 0.6462585034013606, 0.6462585034013606, 0.6530612244897959, 0.6462585034013606, 0.6462585034013606, 0.6666666666666666, 0.6598639455782312, 0.6462585034013606, 0.6462585034013606, 0.7074829931972789, 0.9319727891156463, 0.9387755102040817, 0.9047619047619048, 0.7891156462585034, 0.673469387755102, 0.6462585034013606, 0.6530612244897959, 0.6530612244897959, 0.6598639455782312, 0.6666666666666666, 0.6598639455782312, 0.6530612244897959, 0.6394557823129252, 0.6394557823129252, 0.6394557823129252, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6326530612244898, 0.6394557823129252, 0.6394557823129252, 0.6394557823129252, 0.6394557823129252, 0.6394557823129252, 0.6394557823129252, 0.6394557823129252, 0.6462585034013606, 0.6598639455782312, 0.6666666666666666, 0.673469387755102, 0.7006802721088435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TP6A_N.gap.json b/pfam_gap_rates/TP6A_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4ecfc4f19d6fc86de2da3999190d13f91cebf93
--- /dev/null
+++ b/pfam_gap_rates/TP6A_N.gap.json
@@ -0,0 +1 @@
+{"family": "TP6A_N", "n_seqs": 447, "length": 70, "gap_rates": [0.5548098434004475, 0.3288590604026846, 0.21252796420581654, 0.17002237136465326, 0.1319910514541387, 0.09619686800894854, 0.07829977628635347, 0.07606263982102908, 0.07606263982102908, 0.06711409395973154, 0.06487695749440715, 0.06263982102908278, 0.06040268456375839, 0.058165548098434, 0.05592841163310962, 0.05592841163310962, 0.05592841163310962, 0.05592841163310962, 0.05592841163310962, 0.040268456375838924, 0.03803131991051454, 0.03803131991051454, 0.035794183445190156, 0.035794183445190156, 0.03355704697986577, 0.02237136465324385, 0.015659955257270694, 0.015659955257270694, 0.015659955257270694, 0.013422818791946308, 0.013422818791946308, 0.7046979865771812, 0.7427293064876958, 0.8993288590604027, 0.930648769574944, 0.930648769574944, 0.8903803131991052, 0.7158836689038032, 0.7024608501118568, 0.015659955257270694, 0.024608501118568233, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.006711409395973154, 0.008948545861297539, 0.008948545861297539, 0.008948545861297539, 0.011185682326621925, 0.011185682326621925, 0.011185682326621925, 0.017897091722595078, 0.017897091722595078, 0.020134228187919462, 0.020134228187919462, 0.02237136465324385, 0.02237136465324385, 0.024608501118568233, 0.029082774049217, 0.03355704697986577, 0.03355704697986577, 0.03803131991051454, 0.04697986577181208, 0.058165548098434, 0.07158836689038031, 0.07829977628635347, 0.08501118568232663, 0.0894854586129754, 0.10514541387024609, 0.25279642058165547], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_10.gap.json b/pfam_gap_rates/TPR_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae92150f3da17f74b573315e736ab2e167514176
--- /dev/null
+++ b/pfam_gap_rates/TPR_10.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_10", "n_seqs": 5000, "length": 45, "gap_rates": [0.6204, 0.3884, 0.274, 0.1748, 0.1128, 0.0886, 0.054, 0.0364, 0.0242, 0.0218, 0.0178, 0.0156, 0.0136, 0.0088, 0.0066, 0.0048, 0.004, 0.0032, 0.0016, 0.001, 0.001, 0.0016, 0.0022, 0.0042, 0.105, 0.0076, 0.01, 0.0132, 0.0248, 0.0464, 0.0774, 0.1244, 0.1526, 0.1892, 0.2222, 0.3024, 0.3728, 0.86, 0.9096, 0.855, 0.4504, 0.4884, 0.5202, 0.5958, 0.756], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_11.gap.json b/pfam_gap_rates/TPR_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00ded59a87d16ef9935bc05368c6d3241a3523b9
--- /dev/null
+++ b/pfam_gap_rates/TPR_11.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_11", "n_seqs": 5000, "length": 42, "gap_rates": [0.4916, 0.4346, 0.3038, 0.236, 0.1974, 0.1394, 0.0836, 0.0574, 0.0316, 0.0202, 0.0116, 0.0044, 0.0024, 0.0006, 0.0006, 0.0004, 0.0002, 0.0002, 0.0, 0.0, 0.0, 0.0004, 0.0004, 0.0, 0.0004, 0.0004, 0.0012, 0.0024, 0.0028, 0.0032, 0.0052, 0.007, 0.0088, 0.0102, 0.0182, 0.0288, 0.0544, 0.0856, 0.167, 0.266, 0.4002, 0.59], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_12.gap.json b/pfam_gap_rates/TPR_12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eaeadda0a9c7928398a2053815a465cbd7543f7a
--- /dev/null
+++ b/pfam_gap_rates/TPR_12.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_12", "n_seqs": 5000, "length": 77, "gap_rates": [0.9112, 0.6826, 0.524, 0.4184, 0.2986, 0.2286, 0.224, 0.1372, 0.1074, 0.0954, 0.0934, 0.0846, 0.0746, 0.0672, 0.0586, 0.0438, 0.0366, 0.031, 0.0272, 0.0214, 0.016, 0.013, 0.0118, 0.0108, 0.0088, 0.007, 0.0054, 0.0038, 0.003, 0.0104, 0.0094, 0.01, 0.0066, 0.0896, 0.0898, 0.086, 0.3232, 0.3092, 0.0182, 0.0188, 0.0358, 0.1104, 0.0786, 0.0396, 0.0144, 0.0108, 0.0014, 0.0014, 0.0014, 0.0012, 0.0018, 0.0024, 0.004, 0.0044, 0.0072, 0.0104, 0.0104, 0.0112, 0.015, 0.0142, 0.0182, 0.0226, 0.0254, 0.0284, 0.0324, 0.038, 0.0444, 0.0546, 0.0638, 0.076, 0.0904, 0.116, 0.169, 0.2192, 0.3364, 0.5118, 0.8126], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_15.gap.json b/pfam_gap_rates/TPR_15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15c70bb7ecbeb42c6bab5398f48a5fa960e2cd5f
--- /dev/null
+++ b/pfam_gap_rates/TPR_15.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TPX2_importin.gap.json b/pfam_gap_rates/TPX2_importin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12fccc124de00958820d52f7ddf510fdb9eaa230
--- /dev/null
+++ b/pfam_gap_rates/TPX2_importin.gap.json
@@ -0,0 +1 @@
+{"family": "TPX2_importin", "n_seqs": 179, "length": 184, "gap_rates": [0.6536312849162011, 0.37988826815642457, 0.29608938547486036, 0.25139664804469275, 0.20670391061452514, 0.20670391061452514, 0.2011173184357542, 0.18994413407821228, 0.18994413407821228, 0.18994413407821228, 0.18994413407821228, 0.19553072625698323, 0.19553072625698323, 0.18994413407821228, 0.18994413407821228, 0.18994413407821228, 0.18994413407821228, 0.18994413407821228, 0.18994413407821228, 0.1787709497206704, 0.1787709497206704, 0.1787709497206704, 0.1787709497206704, 0.16759776536312848, 0.17318435754189945, 0.17318435754189945, 0.16759776536312848, 0.16759776536312848, 0.1564245810055866, 0.15083798882681565, 0.18435754189944134, 0.3128491620111732, 0.20670391061452514, 0.20670391061452514, 0.1787709497206704, 0.16201117318435754, 0.1564245810055866, 0.7486033519553073, 0.7486033519553073, 0.1452513966480447, 0.1452513966480447, 0.1452513966480447, 0.15083798882681565, 0.1452513966480447, 0.1452513966480447, 0.1452513966480447, 0.1564245810055866, 0.1564245810055866, 0.1564245810055866, 0.18994413407821228, 0.2011173184357542, 0.18994413407821228, 0.22346368715083798, 0.9441340782122905, 0.20670391061452514, 0.22905027932960895, 0.2011173184357542, 0.19553072625698323, 0.21787709497206703, 0.18994413407821228, 0.1787709497206704, 0.18994413407821228, 0.18994413407821228, 0.1787709497206704, 0.1787709497206704, 0.1787709497206704, 0.17318435754189945, 0.1787709497206704, 0.18435754189944134, 0.18435754189944134, 0.19553072625698323, 0.2011173184357542, 0.19553072625698323, 0.18435754189944134, 0.18435754189944134, 0.18994413407821228, 0.2122905027932961, 0.20670391061452514, 0.2122905027932961, 0.2122905027932961, 0.20670391061452514, 0.21787709497206703, 0.22346368715083798, 0.2346368715083799, 0.24022346368715083, 0.24581005586592178, 0.2569832402234637, 0.26256983240223464, 0.2737430167597765, 0.2849162011173184, 0.41899441340782123, 0.9441340782122905, 0.9497206703910615, 0.9497206703910615, 0.9441340782122905, 0.9441340782122905, 0.4860335195530726, 0.4860335195530726, 0.4860335195530726, 0.5418994413407822, 0.5363128491620112, 0.5363128491620112, 0.88268156424581, 0.6703910614525139, 0.5642458100558659, 0.5586592178770949, 0.5586592178770949, 0.5642458100558659, 0.5642458100558659, 0.5642458100558659, 0.5642458100558659, 0.5698324022346368, 0.5586592178770949, 0.547486033519553, 0.5642458100558659, 0.5586592178770949, 0.5586592178770949, 0.5586592178770949, 0.5586592178770949, 0.5586592178770949, 0.5586592178770949, 0.5586592178770949, 0.553072625698324, 0.553072625698324, 0.547486033519553, 0.6480446927374302, 0.9441340782122905, 0.9497206703910615, 0.7430167597765364, 0.6145251396648045, 0.547486033519553, 0.5754189944134078, 0.5642458100558659, 0.5698324022346368, 0.5754189944134078, 0.5586592178770949, 0.553072625698324, 0.44692737430167595, 0.7821229050279329, 0.7597765363128491, 0.5418994413407822, 0.4134078212290503, 0.40782122905027934, 0.4972067039106145, 0.48044692737430167, 0.4581005586592179, 0.4581005586592179, 0.39106145251396646, 0.39106145251396646, 0.39106145251396646, 0.39106145251396646, 0.39106145251396646, 0.39106145251396646, 0.39106145251396646, 0.39106145251396646, 0.39106145251396646, 0.4022346368715084, 0.4245810055865922, 0.44692737430167595, 0.44692737430167595, 0.441340782122905, 0.5977653631284916, 0.5977653631284916, 0.44692737430167595, 0.44692737430167595, 0.45251396648044695, 0.44692737430167595, 0.44692737430167595, 0.45251396648044695, 0.45251396648044695, 0.45251396648044695, 0.45251396648044695, 0.45251396648044695, 0.4581005586592179, 0.4581005586592179, 0.46368715083798884, 0.4692737430167598, 0.4692737430167598, 0.4692737430167598, 0.4692737430167598, 0.4692737430167598, 0.48044692737430167, 0.48044692737430167, 0.5754189944134078], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TSP_1.gap.json b/pfam_gap_rates/TSP_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00f18217ef639c59aab2d2655ac2e05b21f77c60
--- /dev/null
+++ b/pfam_gap_rates/TSP_1.gap.json
@@ -0,0 +1 @@
+{"family": "TSP_1", "n_seqs": 5000, "length": 61, "gap_rates": [0.6638, 0.4126, 0.2716, 0.0594, 0.0228, 0.0156, 0.0102, 0.0062, 0.0038, 0.0036, 0.0388, 0.0216, 0.0168, 0.0166, 0.9, 0.0128, 0.0148, 0.0068, 0.0032, 0.004, 0.004, 0.0052, 0.0074, 0.011, 0.0112, 0.019, 0.0396, 0.0502, 0.6082, 0.9396, 0.8664, 0.4504, 0.3156, 0.273, 0.2384, 0.1818, 0.1502, 0.1338, 0.134, 0.1436, 0.155, 0.1636, 0.171, 0.226, 0.197, 0.7912, 0.9314, 0.9452, 0.9426, 0.9106, 0.7634, 0.1938, 0.1862, 0.1866, 0.188, 0.9078, 0.2226, 0.267, 0.3034, 0.3298, 0.334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TamB.gap.json b/pfam_gap_rates/TamB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0f9bf719b44cdb61aa2e9b327be4f1d9fd1678a
--- /dev/null
+++ b/pfam_gap_rates/TamB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TcdB_toxin_midN.gap.json b/pfam_gap_rates/TcdB_toxin_midN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e460e0ce2739636442be8a4d0ea4abd06b2f1225
--- /dev/null
+++ b/pfam_gap_rates/TcdB_toxin_midN.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TehB.gap.json b/pfam_gap_rates/TehB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07ee08fac794186ea704aee2df28cee9c86c8dce
--- /dev/null
+++ b/pfam_gap_rates/TehB.gap.json
@@ -0,0 +1 @@
+{"family": "TehB", "n_seqs": 158, "length": 202, "gap_rates": [0.8481012658227848, 0.8417721518987342, 0.8164556962025317, 0.810126582278481, 0.7848101265822784, 0.7658227848101266, 0.740506329113924, 0.7151898734177216, 0.7151898734177216, 0.7025316455696202, 0.6645569620253164, 0.6582278481012658, 0.6518987341772152, 0.6455696202531646, 0.6329113924050633, 0.6075949367088608, 0.5949367088607594, 0.5949367088607594, 0.5822784810126582, 0.5886075949367089, 0.5569620253164557, 0.4936708860759494, 0.4430379746835443, 0.43037974683544306, 0.43037974683544306, 0.41139240506329117, 0.3860759493670886, 0.36075949367088606, 0.3037974683544304, 0.22784810126582278, 0.13924050632911392, 0.05063291139240506, 0.02531645569620253, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.03164556962025317, 0.02531645569620253, 0.03164556962025317, 0.02531645569620253, 0.02531645569620253, 0.03164556962025317, 0.0379746835443038, 0.04430379746835443, 0.056962025316455694, 0.0949367088607595, 0.10759493670886076, 0.10759493670886076, 0.08860759493670886, 0.10126582278481013, 0.10759493670886076, 0.10759493670886076, 0.7025316455696202, 0.1518987341772152, 0.13291139240506328, 0.11392405063291139, 0.10759493670886076, 0.10759493670886076, 0.0949367088607595, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.11392405063291139, 0.12025316455696203, 0.1518987341772152, 0.1518987341772152, 0.16455696202531644, 0.930379746835443, 0.16455696202531644, 0.930379746835443, 0.1518987341772152, 0.1518987341772152, 0.1518987341772152, 0.14556962025316456, 0.1518987341772152, 0.22151898734177214, 0.25949367088607594, 0.33544303797468356, 0.2848101265822785, 0.2088607594936709, 0.1962025316455696, 0.189873417721519, 0.17721518987341772, 0.17721518987341772, 0.17721518987341772, 0.17721518987341772, 0.18354430379746836, 0.20253164556962025, 0.21518987341772153, 0.21518987341772153, 0.2088607594936709, 0.2088607594936709, 0.21518987341772153, 0.21518987341772153, 0.21518987341772153, 0.21518987341772153, 0.22151898734177214, 0.25316455696202533, 0.2721518987341772, 0.2721518987341772, 0.2721518987341772, 0.25949367088607594, 0.2468354430379747, 0.24050632911392406, 0.9493670886075949, 0.9493670886075949, 0.9493670886075949, 0.25316455696202533, 0.3037974683544304, 0.31645569620253167, 0.2911392405063291, 0.2911392405063291, 0.2721518987341772, 0.3037974683544304, 0.310126582278481, 0.3037974683544304, 0.2974683544303797, 0.2974683544303797, 0.310126582278481, 0.3227848101265823, 0.31645569620253167, 0.3291139240506329, 0.9430379746835443, 0.9430379746835443, 0.9430379746835443, 0.930379746835443, 0.33544303797468356, 0.34810126582278483, 0.34810126582278483, 0.34177215189873417, 0.33544303797468356, 0.3291139240506329, 0.3291139240506329, 0.3291139240506329, 0.3291139240506329, 0.3291139240506329, 0.33544303797468356, 0.33544303797468356, 0.34177215189873417, 0.35443037974683544, 0.35443037974683544, 0.34810126582278483, 0.34810126582278483, 0.34810126582278483, 0.34810126582278483, 0.34810126582278483, 0.35443037974683544, 0.36075949367088606, 0.379746835443038, 0.3860759493670886, 0.41139240506329117, 0.43037974683544306, 0.5126582278481012, 0.5822784810126582, 0.6265822784810127, 0.6518987341772152, 0.6772151898734177, 0.689873417721519, 0.689873417721519, 0.6962025316455697, 0.7215189873417721, 0.740506329113924, 0.740506329113924, 0.7468354430379747, 0.7468354430379747, 0.7531645569620253, 0.740506329113924, 0.7341772151898734, 0.7341772151898734, 0.7531645569620253, 0.7531645569620253, 0.759493670886076, 0.759493670886076, 0.759493670886076, 0.759493670886076, 0.7658227848101266], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Telomere_Sde2.gap.json b/pfam_gap_rates/Telomere_Sde2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5d110b27fd31b334c6ee7c7808684008ddea6b3
--- /dev/null
+++ b/pfam_gap_rates/Telomere_Sde2.gap.json
@@ -0,0 +1 @@
+{"family": "Telomere_Sde2", "n_seqs": 303, "length": 185, "gap_rates": [0.7986798679867987, 0.6105610561056105, 0.5907590759075908, 0.5808580858085809, 0.5808580858085809, 0.5742574257425742, 0.5775577557755776, 0.5742574257425742, 0.5742574257425742, 0.5742574257425742, 0.570957095709571, 0.7557755775577558, 0.7326732673267327, 0.7029702970297029, 0.570957095709571, 0.5511551155115512, 0.5511551155115512, 0.5511551155115512, 0.5478547854785478, 0.5478547854785478, 0.5445544554455446, 0.5445544554455446, 0.5412541254125413, 0.5412541254125413, 0.5445544554455446, 0.5445544554455446, 0.5412541254125413, 0.5346534653465347, 0.5313531353135313, 0.5313531353135313, 0.5379537953795379, 0.5346534653465347, 0.5346534653465347, 0.5379537953795379, 0.5346534653465347, 0.5313531353135313, 0.528052805280528, 0.528052805280528, 0.528052805280528, 0.528052805280528, 0.528052805280528, 0.6798679867986799, 0.594059405940594, 0.6072607260726073, 0.6567656765676567, 0.9471947194719472, 0.8778877887788779, 0.6171617161716172, 0.594059405940594, 0.5247524752475248, 0.5148514851485149, 0.5115511551155115, 0.5115511551155115, 0.5082508250825083, 0.5115511551155115, 0.6270627062706271, 0.6039603960396039, 0.5643564356435643, 0.6204620462046204, 0.5841584158415841, 0.528052805280528, 0.5181518151815182, 0.5016501650165016, 0.49834983498349833, 0.504950495049505, 0.49504950495049505, 0.49504950495049505, 0.49174917491749176, 0.47194719471947194, 0.45874587458745875, 0.44554455445544555, 0.4521452145214521, 0.4389438943894389, 0.44554455445544555, 0.44884488448844884, 0.6435643564356436, 0.858085808580858, 0.9108910891089109, 0.9240924092409241, 0.8745874587458746, 0.8184818481848185, 0.39603960396039606, 0.3234323432343234, 0.26732673267326734, 0.23102310231023102, 0.1188118811881188, 0.0627062706270627, 0.04950495049504951, 0.04950495049504951, 0.0462046204620462, 0.039603960396039604, 0.039603960396039604, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.033003300330033, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.013201320132013201, 0.013201320132013201, 0.0165016501650165, 0.036303630363036306, 0.11551155115511551, 0.132013201320132, 0.066006600660066, 0.056105610561056105, 0.14521452145214522, 0.30363036303630364, 0.19471947194719472, 0.009900990099009901, 0.019801980198019802, 0.026402640264026403, 0.0462046204620462, 0.8481848184818482, 0.9438943894389439, 0.7722772277227723, 0.7062706270627063, 0.6534653465346535, 0.033003300330033, 0.009900990099009901, 0.006600660066006601, 0.006600660066006601, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.013201320132013201, 0.013201320132013201, 0.009900990099009901, 0.0165016501650165, 0.0231023102310231, 0.033003300330033, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.036303630363036306, 0.039603960396039604, 0.0429042904290429, 0.0429042904290429, 0.0462046204620462, 0.052805280528052806, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.8382838283828383, 0.8745874587458746, 0.8844884488448845, 0.8943894389438944, 0.9075907590759076, 0.8943894389438944, 0.8910891089108911, 0.8844884488448845, 0.8613861386138614, 0.8283828382838284, 0.08250825082508251, 0.16831683168316833, 0.13861386138613863, 0.132013201320132, 0.13861386138613863, 0.15181518151815182, 0.16831683168316833, 0.16831683168316833, 0.9207920792079208, 0.20462046204620463, 0.22112211221122113, 0.24752475247524752, 0.264026402640264, 0.3201320132013201, 0.3696369636963696, 0.44554455445544555, 0.48514851485148514, 0.5511551155115512, 0.6303630363036303, 0.7491749174917491, 0.8118811881188119], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Terminase_2.gap.json b/pfam_gap_rates/Terminase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..095a283527392f3bbdeb0965743594d6321ff645
--- /dev/null
+++ b/pfam_gap_rates/Terminase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Terminase_2", "n_seqs": 286, "length": 213, "gap_rates": [0.2727272727272727, 0.23076923076923078, 0.1853146853146853, 0.15384615384615385, 0.13636363636363635, 0.1258741258741259, 0.0944055944055944, 0.08741258741258741, 0.08741258741258741, 0.08041958041958042, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.8951048951048951, 0.07692307692307693, 0.07342657342657342, 0.06293706293706294, 0.055944055944055944, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.055944055944055944, 0.05944055944055944, 0.8146853146853147, 0.05944055944055944, 0.05944055944055944, 0.06293706293706294, 0.06293706293706294, 0.07342657342657342, 0.07692307692307693, 0.9055944055944056, 0.9125874125874126, 0.8951048951048951, 0.15734265734265734, 0.1258741258741259, 0.11188811188811189, 0.08391608391608392, 0.06293706293706294, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.05244755244755245, 0.05244755244755245, 0.055944055944055944, 0.055944055944055944, 0.05944055944055944, 0.055944055944055944, 0.06643356643356643, 0.06293706293706294, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.06643356643356643, 0.07342657342657342, 0.07692307692307693, 0.09090909090909091, 0.10839160839160839, 0.11188811188811189, 0.11538461538461539, 0.1048951048951049, 0.1048951048951049, 0.08391608391608392, 0.07692307692307693, 0.08041958041958042, 0.12237762237762238, 0.10839160839160839, 0.10139860139860139, 0.10839160839160839, 0.1048951048951049, 0.0979020979020979, 0.09090909090909091, 0.0979020979020979, 0.0979020979020979, 0.10139860139860139, 0.1048951048951049, 0.1048951048951049, 0.11188811188811189, 0.13286713286713286, 0.12937062937062938, 0.13286713286713286, 0.13636363636363635, 0.15384615384615385, 0.15034965034965034, 0.15734265734265734, 0.15384615384615385, 0.6258741258741258, 0.6608391608391608, 0.7377622377622378, 0.7797202797202797, 0.7972027972027972, 0.7972027972027972, 0.8006993006993007, 0.8076923076923077, 0.8216783216783217, 0.8286713286713286, 0.8356643356643356, 0.8496503496503497, 0.8531468531468531, 0.8531468531468531, 0.8916083916083916, 0.9055944055944056, 0.9265734265734266, 0.9405594405594405, 0.9405594405594405, 0.9440559440559441, 0.9475524475524476, 0.9475524475524476, 0.9475524475524476, 0.9440559440559441, 0.9405594405594405, 0.9405594405594405, 0.9405594405594405, 0.9090909090909091, 0.8986013986013986, 0.8671328671328671, 0.8531468531468531, 0.8531468531468531, 0.8461538461538461, 0.8321678321678322, 0.8216783216783217, 0.8111888111888111, 0.8041958041958042, 0.7972027972027972, 0.7972027972027972, 0.7902097902097902, 0.7692307692307693, 0.7167832167832168, 0.6468531468531469, 0.5559440559440559, 0.46853146853146854, 0.46853146853146854, 0.43006993006993005, 0.4125874125874126, 0.3741258741258741, 0.3741258741258741, 0.36713286713286714, 0.36013986013986016, 0.32517482517482516, 0.2972027972027972, 0.2972027972027972, 0.2937062937062937, 0.27972027972027974, 0.26573426573426573, 0.2517482517482518, 0.23426573426573427, 0.21678321678321677, 0.21678321678321677, 0.21328671328671328, 0.2202797202797203, 0.24125874125874125, 0.2517482517482518, 0.23426573426573427, 0.5874125874125874, 0.6958041958041958, 0.7762237762237763, 0.8146853146853147, 0.8356643356643356, 0.8986013986013986, 0.9405594405594405, 0.9405594405594405, 0.9230769230769231, 0.8461538461538461, 0.8286713286713286, 0.7867132867132867, 0.7587412587412588, 0.6153846153846154, 0.493006993006993, 0.2062937062937063, 0.20279720279720279, 0.1993006993006993, 0.1993006993006993, 0.1993006993006993, 0.1993006993006993, 0.20279720279720279, 0.2062937062937063, 0.2062937062937063, 0.2062937062937063, 0.2062937062937063, 0.2097902097902098, 0.21328671328671328, 0.21328671328671328, 0.21328671328671328, 0.21678321678321677, 0.2202797202797203, 0.2202797202797203, 0.23426573426573427, 0.2517482517482518, 0.8706293706293706, 0.8811188811188811, 0.8916083916083916, 0.916083916083916, 0.9230769230769231, 0.9055944055944056, 0.8916083916083916, 0.8706293706293706, 0.8636363636363636, 0.3006993006993007, 0.3881118881118881, 0.8951048951048951, 0.8531468531468531, 0.45104895104895104, 0.479020979020979, 0.48951048951048953, 0.48951048951048953, 0.513986013986014, 0.5524475524475524, 0.6188811188811189, 0.6993006993006993, 0.9265734265734266], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Terminase_5.gap.json b/pfam_gap_rates/Terminase_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..97837bbd588f2966d2e210291386a5ca83666c1d
--- /dev/null
+++ b/pfam_gap_rates/Terminase_5.gap.json
@@ -0,0 +1 @@
+{"family": "Terminase_5", "n_seqs": 114, "length": 59, "gap_rates": [0.631578947368421, 0.4824561403508772, 0.39473684210526316, 0.3508771929824561, 0.2807017543859649, 0.21929824561403508, 0.17543859649122806, 0.14912280701754385, 0.14035087719298245, 0.07894736842105263, 0.07017543859649122, 0.07017543859649122, 0.06140350877192982, 0.05263157894736842, 0.03508771929824561, 0.02631578947368421, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.008771929824561403, 0.0, 0.0, 0.0, 0.9035087719298246, 0.0, 0.0, 0.0, 0.0, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.017543859649122806, 0.05263157894736842, 0.05263157894736842, 0.06140350877192982, 0.14035087719298245, 0.16666666666666666, 0.20175438596491227, 0.22807017543859648, 0.24561403508771928, 0.2982456140350877, 0.3333333333333333, 0.37719298245614036, 0.38596491228070173, 0.39473684210526316, 0.42105263157894735, 0.4298245614035088, 0.45614035087719296, 0.45614035087719296, 0.45614035087719296, 0.47368421052631576, 0.47368421052631576, 0.47368421052631576, 0.5526315789473685, 0.7105263157894737], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Terpene_synth_C.gap.json b/pfam_gap_rates/Terpene_synth_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e90e6bde1606fdafbf026164f4f894d5e01daf6
--- /dev/null
+++ b/pfam_gap_rates/Terpene_synth_C.gap.json
@@ -0,0 +1 @@
+{"family": "Terpene_synth_C", "n_seqs": 1241, "length": 270, "gap_rates": [0.42868654311039484, 0.33843674456083805, 0.31990330378726833, 0.3182917002417405, 0.3174858984689766, 0.3158742949234488, 0.3150684931506849, 0.3150684931506849, 0.3134568896051571, 0.31184528605962936, 0.31103948428686545, 0.31103948428686545, 0.31103948428686545, 0.30942788074133765, 0.30862207896857374, 0.30781627719580984, 0.30781627719580984, 0.30781627719580984, 0.30701047542304594, 0.30539887187751813, 0.29814665592264306, 0.29250604351329573, 0.2860596293311845, 0.28283642224012895, 0.28203062046736505, 0.28203062046736505, 0.28122481869460114, 0.28122481869460114, 0.28122481869460114, 0.27961321514907334, 0.27880741337630943, 0.48267526188557613, 0.28041901692183724, 0.2763900080580177, 0.273972602739726, 0.27074939564867045, 0.273972602739726, 0.27074939564867045, 0.26913779210314265, 0.2731668009669621, 0.2731668009669621, 0.27074939564867045, 0.26510878323932313, 0.2634971796937953, 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\ No newline at end of file
diff --git a/pfam_gap_rates/TetR_C_2.gap.json b/pfam_gap_rates/TetR_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98b7725586566c185aaebe318896113bd7388963
--- /dev/null
+++ b/pfam_gap_rates/TetR_C_2.gap.json
@@ -0,0 +1 @@
+{"family": "TetR_C_2", "n_seqs": 157, "length": 121, "gap_rates": [0.5222929936305732, 0.3630573248407643, 0.25477707006369427, 0.21656050955414013, 0.1910828025477707, 0.17834394904458598, 0.17834394904458598, 0.16560509554140126, 0.15286624203821655, 0.1464968152866242, 0.1464968152866242, 0.14012738853503184, 0.12738853503184713, 0.11464968152866242, 0.11464968152866242, 0.10191082802547771, 0.11464968152866242, 0.09554140127388536, 0.07643312101910828, 0.07643312101910828, 0.07006369426751592, 0.07006369426751592, 0.06369426751592357, 0.06369426751592357, 0.06369426751592357, 0.05732484076433121, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.05732484076433121, 0.044585987261146494, 0.06369426751592357, 0.06369426751592357, 0.06369426751592357, 0.050955414012738856, 0.044585987261146494, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.03821656050955414, 0.044585987261146494, 0.09554140127388536, 0.044585987261146494, 0.03821656050955414, 0.044585987261146494, 0.03184713375796178, 0.03184713375796178, 0.03821656050955414, 0.025477707006369428, 0.025477707006369428, 0.01910828025477707, 0.03821656050955414, 0.050955414012738856, 0.025477707006369428, 0.01910828025477707, 0.012738853503184714, 0.006369426751592357, 0.01910828025477707, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.006369426751592357, 0.01910828025477707, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.012738853503184714, 0.012738853503184714, 0.01910828025477707, 0.012738853503184714, 0.01910828025477707, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.01910828025477707, 0.03184713375796178, 0.03821656050955414, 0.03821656050955414, 0.050955414012738856, 0.044585987261146494, 0.044585987261146494, 0.050955414012738856, 0.07643312101910828, 0.08917197452229299, 0.08917197452229299, 0.09554140127388536, 0.09554140127388536, 0.09554140127388536, 0.10191082802547771, 0.11464968152866242, 0.12101910828025478, 0.12101910828025478, 0.1337579617834395, 0.1464968152866242, 0.15286624203821655, 0.1910828025477707, 0.21019108280254778, 0.2229299363057325, 0.2929936305732484, 0.4394904458598726, 0.5095541401273885, 0.6878980891719745, 0.9426751592356688], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredox_DsbH.gap.json b/pfam_gap_rates/Thioredox_DsbH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6778b37f141b7792b70ba3ea040c2275b08974d6
--- /dev/null
+++ b/pfam_gap_rates/Thioredox_DsbH.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredox_DsbH", "n_seqs": 1041, "length": 168, "gap_rates": [0.7281460134486071, 0.17675312199807877, 0.16234390009606148, 0.1585014409221902, 0.1585014409221902, 0.1575408261287224, 0.15081652257444764, 0.14793467819404418, 0.14697406340057637, 0.14505283381364073, 0.1431316042267051, 0.14217098943323728, 0.13928914505283382, 0.13640730067243034, 0.13064361191162344, 0.10951008645533142, 0.09510086455331412, 0.07684918347742556, 0.06724303554274735, 0.06340057636887608, 0.06051873198847262, 0.059558117195004805, 0.059558117195004805, 0.06051873198847262, 0.06147934678194044, 0.07300672430355427, 0.07780979827089338, 0.06243996157540826, 0.056676272814601344, 0.05571565802113353, 0.05571565802113353, 0.05571565802113353, 0.05571565802113353, 0.05571565802113353, 0.05571565802113353, 0.05571565802113353, 0.056676272814601344, 0.056676272814601344, 0.056676272814601344, 0.05763688760806916, 0.05763688760806916, 0.05763688760806916, 0.05571565802113353, 0.05859750240153699, 0.059558117195004805, 0.05859750240153699, 0.05763688760806916, 0.07108549471661864, 0.07108549471661864, 0.07108549471661864, 0.07396733909702209, 0.07012487992315082, 0.07012487992315082, 0.06820365033621517, 0.03650336215177714, 0.03842459173871278, 0.04226705091258405, 0.043227665706051875, 0.04226705091258405, 0.04226705091258405, 0.04226705091258405, 0.04226705091258405, 0.04226705091258405, 0.04130643611911623, 0.04226705091258405, 0.04226705091258405, 0.04226705091258405, 0.04226705091258405, 0.040345821325648415, 0.04130643611911623, 0.0393852065321806, 0.040345821325648415, 0.0393852065321806, 0.0393852065321806, 0.0393852065321806, 0.0393852065321806, 0.0393852065321806, 0.040345821325648415, 0.040345821325648415, 0.04130643611911623, 0.04130643611911623, 0.04514889529298751, 0.04610951008645533, 0.04899135446685879, 0.05187319884726225, 0.052833813640730067, 0.059558117195004805, 0.06628242074927954, 0.06820365033621517, 0.07012487992315082, 0.07396733909702209, 0.09606147934678194, 0.0989433237271854, 0.10182516810758886, 0.10086455331412104, 0.1037463976945245, 0.10278578290105668, 0.10566762728146013, 0.9356388088376562, 0.10086455331412104, 0.08741594620557157, 0.08741594620557157, 0.0845341018251681, 0.0845341018251681, 0.0845341018251681, 0.08357348703170028, 0.08357348703170028, 0.08261287223823247, 0.08261287223823247, 0.08165225744476465, 0.08165225744476465, 0.08165225744476465, 0.9414024975984631, 0.08165225744476465, 0.08261287223823247, 0.08357348703170028, 0.08549471661863593, 0.08645533141210375, 0.0893371757925072, 0.09510086455331412, 0.09702209414024976, 0.09606147934678194, 0.09702209414024976, 0.09510086455331412, 0.09510086455331412, 0.09702209414024976, 0.1642651296829971, 0.2420749279538905, 0.24591738712776176, 0.24591738712776176, 0.24591738712776176, 0.2430355427473583, 0.9481268011527377, 0.9481268011527377, 0.94716618635927, 0.18251681075888568, 0.10758885686839577, 0.10758885686839577, 0.10662824207492795, 0.10662824207492795, 0.10758885686839577, 0.10758885686839577, 0.10758885686839577, 0.10854947166186359, 0.10854947166186359, 0.10951008645533142, 0.10951008645533142, 0.1143131604226705, 0.11527377521613832, 0.11527377521613832, 0.11527377521613832, 0.11623439000960614, 0.11815561959654179, 0.12295869356388088, 0.12487992315081652, 0.12776176753121998, 0.12968299711815562, 0.13256484149855907, 0.1344860710854947, 0.138328530259366, 0.14024975984630164, 0.14217098943323728, 0.14985590778097982, 0.1585014409221902, 0.1777137367915466, 0.2478386167146974, 0.3314121037463977, 0.9116234390009607], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredoxin_8.gap.json b/pfam_gap_rates/Thioredoxin_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c22f1f2362023f04a00e7f20570ad58a5cd8084e
--- /dev/null
+++ b/pfam_gap_rates/Thioredoxin_8.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredoxin_8", "n_seqs": 1427, "length": 109, "gap_rates": [0.39383321653819203, 0.17449194113524877, 0.09600560616678346, 0.05886475122634898, 0.0322354590049054, 0.030833917309039945, 0.030833917309039945, 0.030133146461107218, 0.02803083391730904, 0.026629292221443588, 0.028731604765241767, 0.02452697967764541, 0.02452697967764541, 0.023826208829712685, 0.023125437981779958, 0.02242466713384723, 0.023826208829712685, 0.021723896285914507, 0.019621583742116328, 0.0189208128941836, 0.018220042046250877, 0.016818500350385426, 0.015416958654519973, 0.011913104414856343, 0.011212333566923615, 0.009110021023125438, 0.011212333566923615, 0.012613875262789068, 0.01051156271899089, 0.011212333566923615, 0.0161177295024527, 0.9481429572529783, 0.9460406447091801, 0.3987386124737211, 0.8745620182200421, 0.9425367904695164, 0.562718990889979, 0.18220042046250876, 0.039943938332165384, 0.008409250175192713, 0.006306937631394534, 0.005606166783461808, 0.005606166783461808, 0.005606166783461808, 0.005606166783461808, 0.005606166783461808, 0.005606166783461808, 0.005606166783461808, 0.00700770847932726, 0.9460406447091801, 0.9313244569025928, 0.008409250175192713, 0.9453398738612474, 0.016818500350385426, 0.026629292221443588, 0.011212333566923615, 0.008409250175192713, 0.009110021023125438, 0.008409250175192713, 0.009110021023125438, 0.009810791871058164, 0.009810791871058164, 0.009810791871058164, 0.008409250175192713, 0.009810791871058164, 0.9481429572529783, 0.9201121233356693, 0.5066573230553609, 0.47231955150665733, 0.032936229852838124, 0.01751927119831815, 0.016818500350385426, 0.01401541695865452, 0.05746320953048353, 0.027330063069376315, 0.02452697967764541, 0.025227750525578137, 0.050455501051156273, 0.04204625087596356, 0.06867554309740714, 0.9397337070777856, 0.7337070777855641, 0.04905395935529082, 0.03433777154870357, 0.03714085494043448, 0.0350385423966363, 0.0350385423966363, 0.03714085494043448, 0.039243167484232656, 0.0378416257883672, 0.036440084092501754, 0.03854239663629993, 0.039943938332165384, 0.039943938332165384, 0.9495444989488437, 0.04134548002803083, 0.04134548002803083, 0.042747021723896286, 0.04204625087596356, 0.04204625087596356, 0.04765241765942537, 0.04835318850735809, 0.05886475122634898, 0.9376313945339874, 0.0756832515767344, 0.10371408549404344, 0.13875262789067974, 0.21513665031534687, 0.5143658023826209], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tho2.gap.json b/pfam_gap_rates/Tho2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7f49c3f0dd23b1532de5cad7426246684a9ead0
--- /dev/null
+++ b/pfam_gap_rates/Tho2.gap.json
@@ -0,0 +1 @@
+{"family": "Tho2", "n_seqs": 375, "length": 345, "gap_rates": [0.488, 0.38666666666666666, 0.2693333333333333, 0.20266666666666666, 0.18666666666666668, 0.16, 0.15466666666666667, 0.15466666666666667, 0.15466666666666667, 0.15466666666666667, 0.152, 0.152, 0.14933333333333335, 0.14666666666666667, 0.144, 0.144, 0.144, 0.144, 0.144, 0.144, 0.144, 0.144, 0.144, 0.144, 0.14133333333333334, 0.14133333333333334, 0.13866666666666666, 0.13866666666666666, 0.13866666666666666, 0.13866666666666666, 0.13866666666666666, 0.13866666666666666, 0.13866666666666666, 0.13866666666666666, 0.13866666666666666, 0.13866666666666666, 0.152, 0.152, 0.14933333333333335, 0.152, 0.16, 0.84, 0.872, 0.8906666666666667, 0.9413333333333334, 0.9013333333333333, 0.8853333333333333, 0.856, 0.8373333333333334, 0.3893333333333333, 0.3973333333333333, 0.36, 0.3466666666666667, 0.27466666666666667, 0.3333333333333333, 0.37866666666666665, 0.632, 0.2613333333333333, 0.24, 0.224, 0.2, 0.192, 0.16533333333333333, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Thr_dehydrat_C.gap.json b/pfam_gap_rates/Thr_dehydrat_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d249d2adc39b668478094dc3b6f0a451d2b0397
--- /dev/null
+++ b/pfam_gap_rates/Thr_dehydrat_C.gap.json
@@ -0,0 +1 @@
+{"family": "Thr_dehydrat_C", "n_seqs": 1454, "length": 94, "gap_rates": [0.4360385144429161, 0.36519944979367264, 0.29160935350756534, 0.2592847317744154, 0.218707015130674, 0.17056396148555708, 0.11966987620357634, 0.039202200825309494, 0.017881705639614855, 0.013067400275103164, 0.012379642365887207, 0.01031636863823934, 0.01031636863823934, 0.009628610729023384, 0.008253094910591471, 0.007565337001375516, 0.007565337001375516, 0.007565337001375516, 0.007565337001375516, 0.005502063273727648, 0.005502063273727648, 0.005502063273727648, 0.004814305364511692, 0.005502063273727648, 0.005502063273727648, 0.005502063273727648, 0.005502063273727648, 0.005502063273727648, 0.006189821182943604, 0.005502063273727648, 0.005502063273727648, 0.005502063273727648, 0.004814305364511692, 0.005502063273727648, 0.0041265474552957355, 0.3528198074277854, 0.8094910591471802, 0.002751031636863824, 0.0034387895460797797, 0.0034387895460797797, 0.002751031636863824, 0.002751031636863824, 0.002751031636863824, 0.0034387895460797797, 0.0034387895460797797, 0.0041265474552957355, 0.005502063273727648, 0.007565337001375516, 0.7262723521320495, 0.008253094910591471, 0.0068775790921595595, 0.006189821182943604, 0.006189821182943604, 0.006189821182943604, 0.006189821182943604, 0.007565337001375516, 0.008253094910591471, 0.009628610729023384, 0.009628610729023384, 0.011691884456671253, 0.012379642365887207, 0.0687757909215956, 0.024759284731774415, 0.024759284731774415, 0.026822558459422285, 0.8872077028885832, 0.328748280605227, 0.02544704264099037, 0.018569463548830812, 0.0171939477303989, 0.0171939477303989, 0.0171939477303989, 0.02063273727647868, 0.02063273727647868, 0.02269601100412655, 0.024071526822558458, 0.02888583218707015, 0.030261348005502064, 0.030949105914718018, 0.03370013755158184, 0.03370013755158184, 0.035075653370013754, 0.03645116918844567, 0.03782668500687758, 0.03851444291609354, 0.039202200825309494, 0.041953232462173314, 0.04332874828060523, 0.04470426409903714, 0.048143053645116916, 0.0577716643741403, 0.07634112792297111, 0.10729023383768914, 0.2310866574965612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thymosin.gap.json b/pfam_gap_rates/Thymosin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85950a268163949435c17d10f7e25f5188135309
--- /dev/null
+++ b/pfam_gap_rates/Thymosin.gap.json
@@ -0,0 +1 @@
+{"family": "Thymosin", "n_seqs": 255, "length": 44, "gap_rates": [0.7098039215686275, 0.6274509803921569, 0.6078431372549019, 0.5607843137254902, 0.43137254901960786, 0.9098039215686274, 0.9137254901960784, 0.9137254901960784, 0.9098039215686274, 0.8901960784313725, 0.16470588235294117, 0.09411764705882353, 0.047058823529411764, 0.0392156862745098, 0.03529411764705882, 0.09803921568627451, 0.09019607843137255, 0.023529411764705882, 0.011764705882352941, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00392156862745098, 0.0, 0.00784313725490196, 0.011764705882352941, 0.011764705882352941, 0.01568627450980392, 0.011764705882352941, 0.0196078431372549, 0.03137254901960784, 0.08235294117647059, 0.10196078431372549, 0.10980392156862745, 0.11764705882352941, 0.12156862745098039, 0.15294117647058825, 0.35294117647058826, 0.6862745098039216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TilS_C.gap.json b/pfam_gap_rates/TilS_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3150226a998a4780849d6f0cc05047d78d6fceda
--- /dev/null
+++ b/pfam_gap_rates/TilS_C.gap.json
@@ -0,0 +1 @@
+{"family": "TilS_C", "n_seqs": 1005, "length": 75, "gap_rates": [0.5741293532338309, 0.32935323383084575, 0.1044776119402985, 0.07164179104477612, 0.05771144278606965, 0.0527363184079602, 0.05970149253731343, 0.028855721393034824, 0.027860696517412936, 0.024875621890547265, 0.020895522388059702, 0.020895522388059702, 0.01990049751243781, 0.042786069651741296, 0.03681592039800995, 0.028855721393034824, 0.023880597014925373, 0.024875621890547265, 0.1044776119402985, 0.1383084577114428, 0.004975124378109453, 0.001990049751243781, 0.001990049751243781, 0.001990049751243781, 0.001990049751243781, 0.001990049751243781, 0.001990049751243781, 0.001990049751243781, 0.001990049751243781, 0.003980099502487562, 0.0029850746268656717, 0.003980099502487562, 0.0029850746268656717, 0.003980099502487562, 0.003980099502487562, 0.0009950248756218905, 0.0009950248756218905, 0.0009950248756218905, 0.012935323383084577, 0.01691542288557214, 0.003980099502487562, 0.003980099502487562, 0.003980099502487562, 0.003980099502487562, 0.009950248756218905, 0.7532338308457711, 0.011940298507462687, 0.010945273631840797, 0.011940298507462687, 0.011940298507462687, 0.013930348258706468, 0.01691542288557214, 0.021890547263681594, 0.03283582089552239, 0.041791044776119404, 0.04975124378109453, 0.05870646766169154, 0.09253731343283582, 0.10746268656716418, 0.13034825870646766, 0.1562189054726368, 0.23980099502487562, 0.25472636815920396, 0.28258706467661693, 0.31044776119402984, 0.37512437810945276, 0.40696517412935324, 0.4368159203980099, 0.48756218905472637, 0.6029850746268657, 0.7213930348258707, 0.8437810945273632, 0.8597014925373134, 0.872636815920398, 0.8835820895522388], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tim17.gap.json b/pfam_gap_rates/Tim17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61967c5aa6173680e4a3a5a0de74d34ad5c8cc51
--- /dev/null
+++ b/pfam_gap_rates/Tim17.gap.json
@@ -0,0 +1 @@
+{"family": "Tim17", "n_seqs": 1699, "length": 154, "gap_rates": [0.7298410829899941, 0.46733372572101234, 0.38081224249558565, 0.3266627427898764, 0.2701589170100059, 0.23837551500882873, 0.22542672160094174, 0.2042377869334903, 0.18010594467333726, 0.14125956444967627, 0.09476162448499117, 0.08416715715126545, 0.07828134196586227, 0.07298410829899941, 0.07121836374337846, 0.06827545615067687, 0.06709829311359623, 0.06650971159505592, 0.06415538552089464, 0.06415538552089464, 0.06356680400235433, 0.06238964096527369, 0.06180105944673337, 0.06180105944673337, 0.06180105944673337, 0.151854031783402, 0.9205414949970571, 0.1877575044143614, 0.25721012360211887, 0.4114184814596822, 0.47969393761035906, 0.6486168334314303, 0.7457327839905827, 0.7863449087698646, 0.8469688051795173, 0.8640376692171866, 0.8893466745144203, 0.9246615656268393, 0.948204826368452, 0.9376103590347263, 0.9064155385520895, 0.8711006474396704, 0.8528546203649205, 0.8393172454384933, 0.773984696880518, 0.6968805179517363, 0.5438493231312537, 0.42789876397881105, 0.2630959387875221, 0.24720423778693348, 0.14479105356091818, 0.13890523837551502, 0.07474985285462037, 0.9011183048852266, 0.9117127722189523, 0.9164214243672749, 0.9258387286639199, 0.9287816362566216, 0.9299587992937022, 0.9323131253678635, 0.9323131253678635, 0.9305473808122425, 0.9287816362566216, 0.9270158917010006, 0.924072984108299, 0.914655679811654, 0.9028840494408475, 0.8964096527369041, 0.049440847557386695, 0.04590935844614479, 0.03649205414949971, 0.04061212477928193, 0.04002354326074161, 0.03590347263095939, 0.034137728075338436, 0.03001765744555621, 0.01942319011183049, 0.017068864037669218, 0.0164802825191289, 0.014125956444967627, 0.014125956444967627, 0.01353737492642731, 0.012948793407886992, 0.024720423778693348, 0.05473808122424956, 0.04178928781636257, 0.04061212477928193, 0.031783402001177165, 0.004120070629782225, 0.010005885815185403, 0.005885815185403178, 0.004708652148322542, 0.004708652148322542, 0.004708652148322542, 0.002942907592701589, 0.002354326074161271, 0.0011771630370806356, 0.0011771630370806356, 0.0011771630370806356, 0.0011771630370806356, 0.0005885815185403178, 0.0005885815185403178, 0.0011771630370806356, 0.002942907592701589, 0.015303119482048263, 0.01059446733372572, 0.9305473808122425, 0.007062978222483814, 0.007062978222483814, 0.005885815185403178, 0.01883460859329017, 0.007062978222483814, 0.007062978222483814, 0.006474396703943496, 0.006474396703943496, 0.006474396703943496, 0.006474396703943496, 0.007062978222483814, 0.00824014125956445, 0.008828722778104767, 0.008828722778104767, 0.008828722778104767, 0.008828722778104767, 0.011771630370806356, 0.9340788699234844, 0.024720423778693348, 0.5479693937610359, 0.5126545026486168, 0.10947616244849911, 0.5950559152442614, 0.9181871689228959, 0.9417304296645085, 0.8822836962919365, 0.5409064155385521, 0.07298410829899941, 0.06356680400235433, 0.9323131253678635, 0.9423190111830488, 0.9164214243672749, 0.06827545615067687, 0.07004120070629782, 0.07357268981753973, 0.07474985285462037, 0.07651559741024132, 0.08298999411418481, 0.0859329017068864, 0.09299587992937022, 0.09711595055915244, 0.10594467333725721, 0.11653914067098294, 0.13596233078281342, 0.19305473808122425, 0.3042966450853443, 0.6562683931724543], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tiny_TM_bacill.gap.json b/pfam_gap_rates/Tiny_TM_bacill.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abe024c7eb66d61924dd24b4097506338cb9ffeb
--- /dev/null
+++ b/pfam_gap_rates/Tiny_TM_bacill.gap.json
@@ -0,0 +1 @@
+{"family": "Tiny_TM_bacill", "n_seqs": 282, "length": 24, "gap_rates": [0.42907801418439717, 0.2801418439716312, 0.13829787234042554, 0.06382978723404255, 0.0425531914893617, 0.010638297872340425, 0.0070921985815602835, 0.0070921985815602835, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07446808510638298, 0.07801418439716312, 0.09929078014184398, 0.20921985815602837, 0.549645390070922], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TipE.gap.json b/pfam_gap_rates/TipE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3f99bdcfbc60d00d349ce5d128e38174b0ee413
--- /dev/null
+++ b/pfam_gap_rates/TipE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tocopherol_cycl.gap.json b/pfam_gap_rates/Tocopherol_cycl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..870d404b3ed086d37a50c0396e34fc4ed6f2bc62
--- /dev/null
+++ b/pfam_gap_rates/Tocopherol_cycl.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Topo_Zn_Ribbon.gap.json b/pfam_gap_rates/Topo_Zn_Ribbon.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e70ab111f00defe1ad09799eeec8323675b95ba
--- /dev/null
+++ b/pfam_gap_rates/Topo_Zn_Ribbon.gap.json
@@ -0,0 +1 @@
+{"family": "Topo_Zn_Ribbon", "n_seqs": 236, "length": 41, "gap_rates": [0.4279661016949153, 0.01694915254237288, 0.00847457627118644, 0.0, 0.0, 0.0, 0.4915254237288136, 0.4915254237288136, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4915254237288136, 0.4915254237288136, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00423728813559322, 0.00423728813559322, 0.00423728813559322, 0.00423728813559322, 0.00847457627118644, 0.17372881355932204, 0.4745762711864407], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Toprim_C_rpt.gap.json b/pfam_gap_rates/Toprim_C_rpt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9664884c1f201eeb1cf17f692c831fe1426aa492
--- /dev/null
+++ b/pfam_gap_rates/Toprim_C_rpt.gap.json
@@ -0,0 +1 @@
+{"family": "Toprim_C_rpt", "n_seqs": 2510, "length": 77, "gap_rates": [0.39203187250996013, 0.36573705179282867, 0.31752988047808767, 0.20159362549800797, 0.08326693227091633, 0.05896414342629482, 0.036254980079681275, 0.017928286852589643, 0.006374501992031873, 0.002390438247011952, 0.00199203187250996, 0.001195219123505976, 0.001195219123505976, 0.0007968127490039841, 0.0007968127490039841, 0.00039840637450199205, 0.00039840637450199205, 0.00039840637450199205, 0.00039840637450199205, 0.00039840637450199205, 0.02908366533864542, 0.8629482071713147, 0.8752988047808765, 0.9139442231075697, 0.9390438247011952, 0.8936254980079681, 0.8701195219123506, 0.8561752988047808, 0.03904382470119522, 0.00796812749003984, 0.646613545816733, 0.6565737051792828, 0.7187250996015936, 0.8211155378486056, 0.904780876494024, 0.9298804780876494, 0.9466135458167331, 0.949003984063745, 0.9374501992031873, 0.9231075697211155, 0.8844621513944223, 0.7398406374501992, 0.698406374501992, 0.649402390438247, 0.6446215139442231, 0.008366533864541833, 0.008764940239043825, 0.007569721115537849, 0.0035856573705179283, 0.00398406374501992, 0.0051792828685258965, 0.011553784860557768, 0.011553784860557768, 0.009163346613545816, 0.02151394422310757, 0.00796812749003984, 0.007171314741035857, 0.007171314741035857, 0.007171314741035857, 0.007569721115537849, 0.00796812749003984, 0.007569721115537849, 0.00796812749003984, 0.008764940239043825, 0.008764940239043825, 0.008764940239043825, 0.008764940239043825, 0.010756972111553785, 0.015537848605577689, 0.021912350597609563, 0.02948207171314741, 0.053784860557768925, 0.20119521912350596, 0.32270916334661354, 0.46254980079681274, 0.7410358565737052, 0.9131474103585657], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TraK.gap.json b/pfam_gap_rates/TraK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd7e1100eef751f14800af4d2b1a96d16e5552e7
--- /dev/null
+++ b/pfam_gap_rates/TraK.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Transket_pyr.gap.json b/pfam_gap_rates/Transket_pyr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..410ca54e8c3d0ec2add6f04d3239fb884b864754
--- /dev/null
+++ b/pfam_gap_rates/Transket_pyr.gap.json
@@ -0,0 +1 @@
+{"family": "Transket_pyr", "n_seqs": 5000, "length": 211, "gap_rates": [0.5924, 0.318, 0.1728, 0.1208, 0.0878, 0.0626, 0.0554, 0.0474, 0.0446, 0.0426, 0.0394, 0.0364, 0.0356, 0.0342, 0.0332, 0.0316, 0.0308, 0.0282, 0.0282, 0.0276, 0.0256, 0.0248, 0.0242, 0.0238, 0.0232, 0.023, 0.0232, 0.023, 0.023, 0.0234, 0.7452, 0.716, 0.0314, 0.0278, 0.0258, 0.0248, 0.024, 0.0234, 0.0238, 0.0242, 0.023, 0.0232, 0.0222, 0.0222, 0.0222, 0.0246, 0.3686, 0.6538, 0.7782, 0.7892, 0.7954, 0.8092, 0.8118, 0.8388, 0.8474, 0.9446, 0.8428, 0.8294, 0.8114, 0.8086, 0.793, 0.7844, 0.6726, 0.651, 0.3456, 0.342, 0.021, 0.018, 0.0178, 0.0176, 0.0172, 0.0172, 0.0172, 0.0172, 0.017, 0.0168, 0.0158, 0.0154, 0.0144, 0.0146, 0.0148, 0.015, 0.0152, 0.0154, 0.0146, 0.0146, 0.0144, 0.0142, 0.0136, 0.6642, 0.827, 0.486, 0.014, 0.0128, 0.013, 0.013, 0.013, 0.0134, 0.0136, 0.0142, 0.014, 0.014, 0.0136, 0.0136, 0.0136, 0.5544, 0.5522, 0.7286, 0.7156, 0.549, 0.4204, 0.0138, 0.0138, 0.0134, 0.0134, 0.0132, 0.013, 0.0134, 0.2504, 0.018, 0.0184, 0.0176, 0.0136, 0.0132, 0.0134, 0.0148, 0.0148, 0.0148, 0.0146, 0.4378, 0.0152, 0.0158, 0.0158, 0.016, 0.016, 0.0164, 0.0166, 0.2058, 0.025, 0.0184, 0.0182, 0.0184, 0.0184, 0.0184, 0.019, 0.0186, 0.02, 0.0182, 0.0184, 0.0188, 0.0188, 0.0182, 0.018, 0.0182, 0.018, 0.018, 0.018, 0.0176, 0.0186, 0.0178, 0.8344, 0.939, 0.939, 0.9396, 0.9466, 0.947, 0.9398, 0.9394, 0.939, 0.938, 0.8342, 0.0174, 0.0172, 0.0174, 0.018, 0.0182, 0.0184, 0.0186, 0.0186, 0.019, 0.0194, 0.0198, 0.0198, 0.0196, 0.0198, 0.0198, 0.02, 0.0204, 0.0206, 0.0214, 0.022, 0.023, 0.542, 0.5206, 0.2736, 0.08, 0.0318, 0.0298, 0.0302, 0.0302, 0.0316, 0.0328, 0.036, 0.0434, 0.0612, 0.0784, 0.1658, 0.272, 0.4234, 0.8402, 0.9064], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transposase_24.gap.json b/pfam_gap_rates/Transposase_24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc9751bc1ce68769049e66f3b2b05327fabe48ce
--- /dev/null
+++ b/pfam_gap_rates/Transposase_24.gap.json
@@ -0,0 +1 @@
+{"family": "Transposase_24", "n_seqs": 320, "length": 150, "gap_rates": [0.9375, 0.478125, 0.371875, 0.2875, 0.2375, 0.2375, 0.234375, 0.23125, 0.23125, 0.228125, 0.221875, 0.209375, 0.203125, 0.2, 0.184375, 0.171875, 0.159375, 0.146875, 0.14375, 0.128125, 0.11875, 0.115625, 0.11875, 0.1125, 0.1125, 0.109375, 0.10625, 0.10625, 0.925, 0.85, 0.134375, 0.125, 0.1125, 0.115625, 0.10625, 0.090625, 0.090625, 0.090625, 0.090625, 0.090625, 0.090625, 0.090625, 0.090625, 0.090625, 0.096875, 0.096875, 0.09375, 0.09375, 0.09375, 0.0875, 0.1, 0.14375, 0.1375, 0.165625, 0.225, 0.715625, 0.94375, 0.465625, 0.184375, 0.18125, 0.159375, 0.1625, 0.165625, 0.146875, 0.146875, 0.15, 0.15, 0.15, 0.153125, 0.153125, 0.15625, 0.1625, 0.1625, 0.865625, 0.18125, 0.19375, 0.203125, 0.209375, 0.215625, 0.890625, 0.853125, 0.4375, 0.3875, 0.321875, 0.328125, 0.290625, 0.24375, 0.25, 0.25, 0.24375, 0.24375, 0.25625, 0.271875, 0.29375, 0.3125, 0.325, 0.3375, 0.340625, 0.35, 0.34375, 0.353125, 0.365625, 0.36875, 0.375, 0.421875, 0.43125, 0.471875, 0.490625, 0.534375, 0.571875, 0.625, 0.728125, 0.775, 0.915625, 0.91875, 0.915625, 0.91875, 0.925, 0.9375, 0.95, 0.9125, 0.878125, 0.64375, 0.6125, 0.5875, 0.578125, 0.584375, 0.584375, 0.590625, 0.590625, 0.590625, 0.590625, 0.6, 0.596875, 0.603125, 0.6125, 0.621875, 0.928125, 0.6125, 0.609375, 0.615625, 0.615625, 0.63125, 0.640625, 0.640625, 0.675, 0.73125, 0.7875, 0.809375, 0.903125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trehalase.gap.json b/pfam_gap_rates/Trehalase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7e73941e9e13954c4509df286f19f7fb9390d82
--- /dev/null
+++ b/pfam_gap_rates/Trehalase.gap.json
@@ -0,0 +1 @@
+{"family": "Trehalase", "n_seqs": 1118, "length": 607, "gap_rates": [0.889087656529517, 0.6627906976744186, 0.5724508050089445, 0.5456171735241503, 0.5348837209302325, 0.5330948121645797, 0.5322003577817531, 0.5304114490161002, 0.5277280858676208, 0.5268336314847942, 0.5241502683363148, 0.5232558139534884, 0.5223613595706619, 0.518783542039356, 0.5152057245080501, 0.5161001788908766, 0.5196779964221825, 0.8452593917710197, 0.8434704830053668, 0.5125223613595706, 0.5125223613595706, 0.5107334525939177, 0.5080500894454383, 0.5053667262969589, 0.5062611806797853, 0.5035778175313059, 0.5044722719141324, 0.5008944543828264, 0.49821109123434704, 0.4964221824686941, 0.4964221824686941, 0.49463327370304117, 0.4937388193202147, 0.646690518783542, 0.7155635062611807, 0.6681574239713775, 0.6708407871198568, 0.610912343470483, 0.5724508050089445, 0.4740608228980322, 0.47227191413237923, 0.47137745974955275, 0.47137745974955275, 0.47048300536672627, 0.47048300536672627, 0.47048300536672627, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Tricorn_C1.gap.json b/pfam_gap_rates/Tricorn_C1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..395fc14f144745917e78ff59f56049a6f0c106a5
--- /dev/null
+++ b/pfam_gap_rates/Tricorn_C1.gap.json
@@ -0,0 +1 @@
+{"family": "Tricorn_C1", "n_seqs": 500, "length": 72, "gap_rates": [0.876, 0.404, 0.328, 0.28, 0.214, 0.134, 0.034, 0.018, 0.014, 0.014, 0.006, 0.006, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.88, 0.88, 0.002, 0.002, 0.002, 0.002, 0.046, 0.04, 0.0, 0.004, 0.004, 0.002, 0.002, 0.002, 0.002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002, 0.004, 0.014, 0.016, 0.012, 0.006, 0.008, 0.002, 0.006, 0.002, 0.002, 0.002, 0.006, 0.006, 0.006, 0.008, 0.008, 0.01, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.012, 0.022, 0.03, 0.03, 0.034, 0.056, 0.218, 0.492, 0.862], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tropomodulin.gap.json b/pfam_gap_rates/Tropomodulin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ae66e09ec6c47be0a7d71e9c26c7e2d2b49d826
--- /dev/null
+++ b/pfam_gap_rates/Tropomodulin.gap.json
@@ -0,0 +1 @@
+{"family": "Tropomodulin", "n_seqs": 204, "length": 153, "gap_rates": [0.4117647058823529, 0.35784313725490197, 0.3137254901960784, 0.3088235294117647, 0.28921568627450983, 0.2696078431372549, 0.2647058823529412, 0.17647058823529413, 0.13725490196078433, 0.12254901960784313, 0.12254901960784313, 0.11764705882352941, 0.11274509803921569, 0.11274509803921569, 0.11274509803921569, 0.11274509803921569, 0.11274509803921569, 0.11274509803921569, 0.11274509803921569, 0.11274509803921569, 0.11274509803921569, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.37254901960784315, 0.37254901960784315, 0.3627450980392157, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09313725490196079, 0.10784313725490197, 0.11764705882352941, 0.1323529411764706, 0.2696078431372549, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.09313725490196079, 0.09313725490196079, 0.09313725490196079, 0.09313725490196079, 0.09313725490196079, 0.09803921568627451, 0.09803921568627451, 0.10294117647058823, 0.10294117647058823, 0.10294117647058823, 0.10294117647058823, 0.10294117647058823, 0.10294117647058823, 0.10294117647058823, 0.10294117647058823, 0.10294117647058823, 0.10294117647058823, 0.9313725490196079, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.10784313725490197, 0.11274509803921569, 0.12745098039215685, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.12254901960784313, 0.14705882352941177, 0.1715686274509804, 0.18627450980392157, 0.19607843137254902, 0.22549019607843138, 0.7647058823529411, 0.24019607843137256, 0.2549019607843137, 0.25, 0.2549019607843137, 0.25980392156862747, 0.25980392156862747, 0.2549019607843137, 0.25980392156862747, 0.2647058823529412, 0.2696078431372549, 0.2696078431372549, 0.31862745098039214, 0.31862745098039214, 0.4166666666666667, 0.47549019607843135, 0.4068627450980392, 0.35294117647058826, 0.30392156862745096, 0.28921568627450983, 0.27450980392156865, 0.27941176470588236, 0.29411764705882354, 0.29901960784313725, 0.30392156862745096, 0.7941176470588235, 0.9019607843137255, 0.9117647058823529, 0.946078431372549, 0.9019607843137255, 0.8725490196078431, 0.7745098039215687, 0.3088235294117647, 0.29411764705882354, 0.29901960784313725, 0.946078431372549, 0.29411764705882354, 0.28921568627450983, 0.28921568627450983, 0.28921568627450983, 0.29411764705882354, 0.29901960784313725, 0.3235294117647059, 0.3333333333333333, 0.3333333333333333, 0.3382352941176471, 0.3382352941176471, 0.3382352941176471, 0.3382352941176471, 0.3480392156862745, 0.35294117647058826, 0.35784313725490197, 0.35784313725490197, 0.35784313725490197, 0.3627450980392157, 0.3627450980392157, 0.36764705882352944, 0.38235294117647056, 0.39215686274509803, 0.39705882352941174, 0.39705882352941174, 0.4019607843137255, 0.4068627450980392, 0.4117647058823529, 0.4117647058823529, 0.4166666666666667, 0.46078431372549017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Troponin.gap.json b/pfam_gap_rates/Troponin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bdd37234ee9868d5159994de36b88320840b2cc0
--- /dev/null
+++ b/pfam_gap_rates/Troponin.gap.json
@@ -0,0 +1 @@
+{"family": "Troponin", "n_seqs": 353, "length": 144, "gap_rates": [0.41076487252124644, 0.38243626062322944, 0.37677053824362605, 0.3654390934844193, 0.34844192634560905, 0.34277620396600567, 0.3314447592067989, 0.31728045325779036, 0.2776203966005666, 0.24079320113314448, 0.18413597733711048, 0.1671388101983003, 0.16147308781869688, 0.1558073654390935, 0.1501416430594901, 0.1501416430594901, 0.14730878186968838, 0.12181303116147309, 0.12181303116147309, 0.11614730878186968, 0.11898016997167139, 0.11898016997167139, 0.11614730878186968, 0.11614730878186968, 0.11614730878186968, 0.11614730878186968, 0.10764872521246459, 0.10764872521246459, 0.10764872521246459, 0.10764872521246459, 0.10764872521246459, 0.10764872521246459, 0.11048158640226628, 0.10764872521246459, 0.1048158640226629, 0.1048158640226629, 0.1048158640226629, 0.1048158640226629, 0.1048158640226629, 0.5325779036827195, 0.1048158640226629, 0.09631728045325778, 0.09631728045325778, 0.37110481586402266, 0.2776203966005666, 0.254957507082153, 0.8951841359773371, 0.06232294617563739, 0.056657223796033995, 0.05099150141643059, 0.042492917847025496, 0.039660056657223795, 0.042492917847025496, 0.05099150141643059, 0.053824362606232294, 0.05099150141643059, 0.04815864022662889, 0.04815864022662889, 0.04815864022662889, 0.04815864022662889, 0.04815864022662889, 0.056657223796033995, 0.056657223796033995, 0.056657223796033995, 0.053824362606232294, 0.053824362606232294, 0.053824362606232294, 0.053824362606232294, 0.053824362606232294, 0.05099150141643059, 0.05099150141643059, 0.05099150141643059, 0.05099150141643059, 0.04815864022662889, 0.05099150141643059, 0.04815864022662889, 0.04815864022662889, 0.0453257790368272, 0.04815864022662889, 0.042492917847025496, 0.042492917847025496, 0.056657223796033995, 0.0679886685552408, 0.0679886685552408, 0.07365439093484419, 0.0821529745042493, 0.08781869688385269, 0.18980169971671387, 0.23229461756373937, 0.24079320113314448, 0.254957507082153, 0.2521246458923513, 0.26062322946175637, 0.3314447592067989, 0.26912181303116145, 0.8611898016997167, 0.2804532577903683, 0.2804532577903683, 0.2804532577903683, 0.2804532577903683, 0.2804532577903683, 0.28611898016997167, 0.28611898016997167, 0.8158640226628895, 0.8243626062322946, 0.9405099150141643, 0.8271954674220963, 0.8186968838526912, 0.8130311614730878, 0.32294617563739375, 0.3286118980169972, 0.3371104815864023, 0.3371104815864023, 0.33994334277620397, 0.34277620396600567, 0.34844192634560905, 0.34844192634560905, 0.8781869688385269, 0.8611898016997167, 0.3654390934844193, 0.35694050991501414, 0.5439093484419264, 0.5042492917847026, 0.49008498583569404, 0.49008498583569404, 0.48158640226628896, 0.42209631728045327, 0.3654390934844193, 0.37960339943342775, 0.37677053824362605, 0.6288951841359773, 0.39660056657223797, 0.38243626062322944, 0.38243626062322944, 0.38243626062322944, 0.38243626062322944, 0.38243626062322944, 0.38243626062322944, 0.38526912181303113, 0.39660056657223797, 0.39943342776203966, 0.40509915014164305, 0.4730878186968839, 0.6147308781869688], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trp_dioxygenase.gap.json b/pfam_gap_rates/Trp_dioxygenase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8d3bf470ed72559e875bf6ed10557853d667ca9
--- /dev/null
+++ b/pfam_gap_rates/Trp_dioxygenase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/U-box.gap.json b/pfam_gap_rates/U-box.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..386a24c6d634782a818b1a913d0844731f8ca596
--- /dev/null
+++ b/pfam_gap_rates/U-box.gap.json
@@ -0,0 +1 @@
+{"family": "U-box", "n_seqs": 3221, "length": 79, "gap_rates": [0.4793542378143434, 0.23439925488978577, 0.18099968953741075, 0.1487115802545793, 0.08568767463520646, 0.06519714374417883, 0.05402049053089103, 0.05153678981682707, 0.05091586463831108, 0.048742626513505125, 0.04656938838869916, 0.04284383731760323, 0.04036013660353927, 0.015212666873641726, 0.012108040981061783, 0.010866190624029805, 0.010866190624029805, 0.01055572803477181, 0.010866190624029805, 0.01055572803477181, 0.010866190624029805, 0.009003415088481837, 0.009003415088481837, 0.8531511952809686, 0.006830176963675877, 0.006519714374417882, 0.006519714374417882, 0.006830176963675877, 0.006209251785159888, 0.005588326606643899, 0.006519714374417882, 0.008382489909965849, 0.008072027320707855, 0.008382489909965849, 0.009934802856255821, 0.010245265445513815, 0.013970816516609749, 0.01334989133809376, 0.9211425023284694, 0.9344923936665632, 0.941943495808755, 0.9292145296491773, 0.8680533995653523, 0.40422229121390874, 0.0443961502638932, 0.028562558211735485, 0.027941633033219497, 0.022042843837317604, 0.022042843837317604, 0.02328469419434958, 0.02390561937286557, 0.025147469729897547, 0.02545793231915554, 0.02607885749767153, 0.027010245265445515, 0.027941633033219497, 0.044706612853151195, 0.04160198696057125, 0.035703197764669355, 0.03508227258615337, 0.03508227258615337, 0.04843216392424713, 0.07792610990375659, 0.08413536168891649, 0.08941322570630239, 0.09344923936665632, 0.09779571561626824, 0.10152126668736418, 0.10928283141881404, 0.11238745731139398, 0.11828624650729587, 0.13443030114871157, 0.15988823346786712, 0.1834833902514747, 0.2331574045327538, 0.31853461657870225, 0.42440235951567834, 0.7000931387767774, 0.9285936044706613], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UBN_AB.gap.json b/pfam_gap_rates/UBN_AB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acc6aa76f029266bd81889f40fb8300128184cac
--- /dev/null
+++ b/pfam_gap_rates/UBN_AB.gap.json
@@ -0,0 +1 @@
+{"family": "UBN_AB", "n_seqs": 134, "length": 270, "gap_rates": [0.6044776119402985, 0.582089552238806, 0.5522388059701493, 0.5298507462686567, 0.40298507462686567, 0.26119402985074625, 0.17164179104477612, 0.16417910447761194, 0.16417910447761194, 0.16417910447761194, 0.16417910447761194, 0.16417910447761194, 0.16417910447761194, 0.16417910447761194, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.14925373134328357, 0.14925373134328357, 0.664179104477612, 0.26119402985074625, 0.1865671641791045, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.48507462686567165, 0.48507462686567165, 0.13432835820895522, 0.13432835820895522, 0.12686567164179105, 0.12686567164179105, 0.11940298507462686, 0.1417910447761194, 0.13432835820895522, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 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\ No newline at end of file
diff --git a/pfam_gap_rates/UFD1.gap.json b/pfam_gap_rates/UFD1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..afb6cc4f25ea396be86510f2f6650cb442e85229
--- /dev/null
+++ b/pfam_gap_rates/UFD1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPA.gap.json b/pfam_gap_rates/UPA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d75b96ad6c486089c8a8121a685201f980e94438
--- /dev/null
+++ b/pfam_gap_rates/UPA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0014.gap.json b/pfam_gap_rates/UPF0014.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57ff918bf1aea0047de27da4928105145e0aba02
--- /dev/null
+++ b/pfam_gap_rates/UPF0014.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0052.gap.json b/pfam_gap_rates/UPF0052.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..989bbf540791a2740076591fc3ed3229abcbd49c
--- /dev/null
+++ b/pfam_gap_rates/UPF0052.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0183.gap.json b/pfam_gap_rates/UPF0183.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68ed92b72f5cf831dfb8c6da93f7f85e52e54f1d
--- /dev/null
+++ b/pfam_gap_rates/UPF0183.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0564.gap.json b/pfam_gap_rates/UPF0564.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a7766522c1a159b351a850a89b47efb3f7ad33c
--- /dev/null
+++ b/pfam_gap_rates/UPF0564.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0565.gap.json b/pfam_gap_rates/UPF0565.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8230c121818be01a7b9347aaf33b7001f009944
--- /dev/null
+++ b/pfam_gap_rates/UPF0565.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UTP25.gap.json b/pfam_gap_rates/UTP25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aadff504fbd4d6ddf6862eaee4828c34071d7753
--- /dev/null
+++ b/pfam_gap_rates/UTP25.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Unstab_antitox.gap.json b/pfam_gap_rates/Unstab_antitox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbc1c8cfbc3c427773f9d614a0a163b028425a38
--- /dev/null
+++ b/pfam_gap_rates/Unstab_antitox.gap.json
@@ -0,0 +1 @@
+{"family": "Unstab_antitox", "n_seqs": 309, "length": 56, "gap_rates": [0.46601941747572817, 0.11003236245954692, 0.0970873786407767, 0.08737864077669903, 0.08414239482200647, 0.08414239482200647, 0.08090614886731391, 0.0744336569579288, 0.07119741100323625, 0.06796116504854369, 0.06796116504854369, 0.06472491909385113, 0.061488673139158574, 0.05825242718446602, 0.05825242718446602, 0.05501618122977346, 0.042071197411003236, 0.03559870550161812, 0.032362459546925564, 0.025889967637540454, 0.7572815533980582, 0.540453074433657, 0.22330097087378642, 0.032362459546925564, 0.009708737864077669, 0.016181229773462782, 0.27184466019417475, 0.006472491909385114, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003236245954692557, 0.003236245954692557, 0.006472491909385114, 0.006472491909385114, 0.012944983818770227, 0.019417475728155338, 0.022653721682847898, 0.025889967637540454, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.03559870550161812, 0.04854368932038835, 0.045307443365695796, 0.042071197411003236, 0.042071197411003236, 0.045307443365695796, 0.05501618122977346, 0.08737864077669903, 0.14563106796116504, 0.3851132686084142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UreE_N.gap.json b/pfam_gap_rates/UreE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5240aeec0ef0aae128344921d895060a558f97e
--- /dev/null
+++ b/pfam_gap_rates/UreE_N.gap.json
@@ -0,0 +1 @@
+{"family": "UreE_N", "n_seqs": 420, "length": 63, "gap_rates": [0.9476190476190476, 0.8714285714285714, 0.780952380952381, 0.7142857142857143, 0.611904761904762, 0.530952380952381, 0.4119047619047619, 0.28809523809523807, 0.22380952380952382, 0.1595238095238095, 0.11428571428571428, 0.0880952380952381, 0.06190476190476191, 0.023809523809523808, 0.02142857142857143, 0.011904761904761904, 0.011904761904761904, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.007142857142857143, 0.004761904761904762, 0.004761904761904762, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.011904761904761904, 0.007142857142857143, 0.004761904761904762, 0.002380952380952381, 0.002380952380952381, 0.0, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.95, 0.8714285714285714, 0.02857142857142857, 0.016666666666666666, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.002380952380952381, 0.004761904761904762, 0.004761904761904762, 0.009523809523809525, 0.011904761904761904, 0.014285714285714285, 0.02142857142857143, 0.047619047619047616, 0.0880952380952381, 0.17857142857142858, 0.2833333333333333, 0.3404761904761905], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Urease_alpha.gap.json b/pfam_gap_rates/Urease_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11d4e1a1103a7ca49537c70638b52c7321313366
--- /dev/null
+++ b/pfam_gap_rates/Urease_alpha.gap.json
@@ -0,0 +1 @@
+{"family": "Urease_alpha", "n_seqs": 758, "length": 126, "gap_rates": [0.19788918205804748, 0.08179419525065963, 0.079155672823219, 0.079155672823219, 0.07783641160949868, 0.07783641160949868, 0.07783641160949868, 0.07783641160949868, 0.07783641160949868, 0.0633245382585752, 0.0633245382585752, 0.0633245382585752, 0.0633245382585752, 0.0633245382585752, 0.0633245382585752, 0.0633245382585752, 0.06200527704485488, 0.06200527704485488, 0.06200527704485488, 0.06200527704485488, 0.06068601583113457, 0.059366754617414245, 0.06068601583113457, 0.06068601583113457, 0.06068601583113457, 0.06068601583113457, 0.06200527704485488, 0.06200527704485488, 0.06200527704485488, 0.06200527704485488, 0.06200527704485488, 0.06200527704485488, 0.06200527704485488, 0.06068601583113457, 0.06200527704485488, 0.8548812664907651, 0.8786279683377308, 0.862796833773087, 0.8456464379947229, 0.06068601583113457, 0.059366754617414245, 0.05804749340369393, 0.05804749340369393, 0.05804749340369393, 0.05804749340369393, 0.05804749340369393, 0.05804749340369393, 0.05804749340369393, 0.059366754617414245, 0.059366754617414245, 0.06068601583113457, 0.059366754617414245, 0.05804749340369393, 0.06068601583113457, 0.06068601583113457, 0.06068601583113457, 0.06068601583113457, 0.06068601583113457, 0.06200527704485488, 0.06200527704485488, 0.059366754617414245, 0.05804749340369393, 0.05672823218997362, 0.05672823218997362, 0.05804749340369393, 0.06068601583113457, 0.21635883905013192, 0.7981530343007915, 0.047493403693931395, 0.01978891820580475, 0.01978891820580475, 0.01978891820580475, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.017150395778364115, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.8839050131926122, 0.017150395778364115, 0.018469656992084433, 0.018469656992084433, 0.017150395778364115, 0.017150395778364115, 0.0158311345646438, 0.017150395778364115, 0.017150395778364115, 0.017150395778364115, 0.017150395778364115, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.022427440633245383, 0.03430079155672823, 0.03562005277044855, 0.040897097625329816, 0.044854881266490766, 0.048812664907651716, 0.051451187335092345, 0.052770448548812667, 0.05804749340369393, 0.05804749340369393, 0.06200527704485488, 0.5197889182058048, 0.5237467018469657, 0.06860158311345646, 0.06728232189973615, 0.06728232189973615, 0.06728232189973615, 0.06728232189973615, 0.06728232189973615, 0.06728232189973615, 0.06728232189973615, 0.06728232189973615, 0.18601583113456466], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ureide_permease.gap.json b/pfam_gap_rates/Ureide_permease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..981dcb9d5c7ef17f69b0a2ded9fdc6e559f2258a
--- /dev/null
+++ b/pfam_gap_rates/Ureide_permease.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Urocanase.gap.json b/pfam_gap_rates/Urocanase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7300b3cf26c5c94186761045e5ad752a1bf66013
--- /dev/null
+++ b/pfam_gap_rates/Urocanase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Use1.gap.json b/pfam_gap_rates/Use1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff4ac2edc6a9e75187936ba15b4b3250497828bd
--- /dev/null
+++ b/pfam_gap_rates/Use1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/V-ATPase_C.gap.json b/pfam_gap_rates/V-ATPase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..248c50cb2b970e795a15d6b64b2e17de850090f5
--- /dev/null
+++ b/pfam_gap_rates/V-ATPase_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VBS.gap.json b/pfam_gap_rates/VBS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b293a22391a444e49a93c253df3821bd2010aaa
--- /dev/null
+++ b/pfam_gap_rates/VBS.gap.json
@@ -0,0 +1 @@
+{"family": "VBS", "n_seqs": 113, "length": 125, "gap_rates": [0.24778761061946902, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.061946902654867256, 0.17699115044247787, 0.19469026548672566, 0.21238938053097345, 0.1504424778761062, 0.1415929203539823, 0.12389380530973451, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.12389380530973451, 0.12389380530973451, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.12389380530973451, 0.11504424778761062, 0.11504424778761062, 0.09734513274336283, 0.09734513274336283, 0.061946902654867256, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.08849557522123894, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.1504424778761062, 0.13274336283185842, 0.10619469026548672, 0.08849557522123894, 0.09734513274336283, 0.11504424778761062, 0.10619469026548672, 0.09734513274336283, 0.12389380530973451, 0.10619469026548672, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.12389380530973451, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.18584070796460178, 0.23008849557522124, 0.23893805309734514, 0.23893805309734514, 0.24778761061946902, 0.24778761061946902, 0.2831858407079646, 0.30973451327433627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VHS.gap.json b/pfam_gap_rates/VHS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01e9d7e84506cbc2f898a999438a0d42c75ca007
--- /dev/null
+++ b/pfam_gap_rates/VHS.gap.json
@@ -0,0 +1 @@
+{"family": "VHS", "n_seqs": 1308, "length": 151, "gap_rates": [0.9197247706422018, 0.7561162079510704, 0.6009174311926605, 0.43654434250764523, 0.3486238532110092, 0.31574923547400613, 0.2759938837920489, 0.2415902140672783, 0.19495412844036697, 0.1735474006116208, 0.13226299694189603, 0.12155963302752294, 0.11697247706422019, 0.11467889908256881, 0.1154434250764526, 0.1162079510703364, 0.11391437308868502, 0.0963302752293578, 0.13226299694189603, 0.13379204892966362, 0.08868501529051988, 0.9464831804281345, 0.9281345565749235, 0.08409785932721713, 0.08103975535168195, 0.07874617737003058, 0.07492354740061162, 0.07415902140672782, 0.06498470948012232, 0.06345565749235474, 0.06116207951070336, 0.06039755351681957, 0.06116207951070336, 0.05963302752293578, 0.05657492354740061, 0.0581039755351682, 0.058868501529051986, 0.05581039755351682, 0.8027522935779816, 0.05504587155963303, 0.04969418960244648, 0.04357798165137615, 0.03746177370030581, 0.03287461773700306, 0.03211009174311927, 0.03134556574923547, 0.03058103975535168, 0.03058103975535168, 0.0290519877675841, 0.0290519877675841, 0.028287461773700305, 0.028287461773700305, 0.028287461773700305, 0.027522935779816515, 0.028287461773700305, 0.0290519877675841, 0.9388379204892966, 0.867737003058104, 0.02522935779816514, 0.02599388379204893, 0.02599388379204893, 0.02522935779816514, 0.02599388379204893, 0.024464831804281346, 0.02217125382262997, 0.021406727828746176, 0.019877675840978593, 0.019877675840978593, 0.016055045871559634, 0.013761467889908258, 0.016819571865443424, 0.0191131498470948, 0.020642201834862386, 0.020642201834862386, 0.016055045871559634, 0.01529051987767584, 0.013761467889908258, 0.01452599388379205, 0.04281345565749235, 0.017584097859327217, 0.016055045871559634, 0.016819571865443424, 0.046636085626911315, 0.0191131498470948, 0.016055045871559634, 0.016819571865443424, 0.01834862385321101, 0.016819571865443424, 0.01834862385321101, 0.01834862385321101, 0.016819571865443424, 0.017584097859327217, 0.016819571865443424, 0.016819571865443424, 0.016819571865443424, 0.01834862385321101, 0.02217125382262997, 0.09403669724770643, 0.04204892966360856, 0.03363914373088685, 0.034403669724770644, 0.03211009174311927, 0.034403669724770644, 0.035932721712538224, 0.04281345565749235, 0.05045871559633028, 0.36162079510703365, 0.6269113149847095, 0.5672782874617737, 0.8990825688073395, 0.849388379204893, 0.04969418960244648, 0.045871559633027525, 0.046636085626911315, 0.04510703363914373, 0.04434250764525994, 0.04434250764525994, 0.04510703363914373, 0.04510703363914373, 0.04510703363914373, 0.04892966360856269, 0.053516819571865444, 0.06422018348623854, 0.06651376146788991, 0.07339449541284404, 0.09021406727828746, 0.0963302752293578, 0.8845565749235474, 0.8929663608562691, 0.8914373088685015, 0.8012232415902141, 0.22324159021406728, 0.21788990825688073, 0.22247706422018348, 0.16819571865443425, 0.1720183486238532, 0.17889908256880735, 0.18654434250764526, 0.1918960244648318, 0.19724770642201836, 0.20107033639143732, 0.20336391437308868, 0.20795107033639143, 0.2117737003058104, 0.21865443425076453, 0.22935779816513763, 0.2484709480122324, 0.27293577981651373, 0.308868501529052, 0.38837920489296635, 0.4938837920489297], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WD40.gap.json b/pfam_gap_rates/WD40.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ea71740844745061f27f78c52a92d887ee4601c
--- /dev/null
+++ b/pfam_gap_rates/WD40.gap.json
@@ -0,0 +1 @@
+{"family": "WD40", "n_seqs": 5000, "length": 46, "gap_rates": [0.8804, 0.681, 0.5396, 0.4224, 0.3374, 0.2646, 0.2072, 0.166, 0.1206, 0.0916, 0.2676, 0.0992, 0.0556, 0.8052, 0.0324, 0.031, 0.0148, 0.0134, 0.079, 0.9404, 0.911, 0.0746, 0.0482, 0.0478, 0.0396, 0.038, 0.0132, 0.0066, 0.9294, 0.9458, 0.9418, 0.898, 0.0136, 0.0224, 0.0152, 0.0028, 0.0014, 0.055, 0.0044, 0.006, 0.0102, 0.0132, 0.02, 0.026, 0.052, 0.282], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WEMBL.gap.json b/pfam_gap_rates/WEMBL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b79957861a966ce74d288c98672535a232ba95e7
--- /dev/null
+++ b/pfam_gap_rates/WEMBL.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/WES_acyltransf.gap.json b/pfam_gap_rates/WES_acyltransf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07985522e93f5ae5fc92356e5ce5cc5f758f000e
--- /dev/null
+++ b/pfam_gap_rates/WES_acyltransf.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/WH1.gap.json b/pfam_gap_rates/WH1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7bed45fad8d7d5910034bf0a4b9efab9837d23f
--- /dev/null
+++ b/pfam_gap_rates/WH1.gap.json
@@ -0,0 +1 @@
+{"family": "WH1", "n_seqs": 637, "length": 120, "gap_rates": [0.9387755102040817, 0.8916797488226059, 0.8430141287284144, 0.7959183673469388, 0.7456828885400314, 0.7268445839874411, 0.695447409733124, 0.6342229199372057, 0.8618524332810047, 0.37205651491365777, 0.31868131868131866, 0.27001569858712715, 0.2370486656200942, 0.21664050235478807, 0.1836734693877551, 0.17582417582417584, 0.15855572998430142, 0.15855572998430142, 0.15698587127158556, 0.13186813186813187, 0.130298273155416, 0.12401883830455258, 0.21350078492935637, 0.2087912087912088, 0.14913657770800628, 0.12087912087912088, 0.11773940345368916, 0.11459968602825746, 0.6357927786499215, 0.1130298273155416, 0.10989010989010989, 0.11145996860282574, 0.31240188383045525, 0.7095761381475667, 0.8744113029827315, 0.9434850863422292, 0.7708006279434851, 0.543171114599686, 0.10989010989010989, 0.10204081632653061, 0.10204081632653061, 0.1130298273155416, 0.10204081632653061, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.08948194662480377, 0.08791208791208792, 0.08006279434850863, 0.06907378335949764, 0.058084772370486655, 0.0565149136577708, 0.05337519623233909, 0.05180533751962323, 0.04709576138147567, 0.04709576138147567, 0.05023547880690738, 0.05023547880690738, 0.04552590266875981, 0.21350078492935637, 0.18681318681318682, 0.8979591836734694, 0.7425431711145997, 0.03924646781789639, 0.04081632653061224, 0.03767660910518053, 0.03296703296703297, 0.03139717425431711, 0.03139717425431711, 0.026687598116169546, 0.026687598116169546, 0.0282574568288854, 0.03139717425431711, 0.03139717425431711, 0.03139717425431711, 0.029827315541601257, 0.02511773940345369, 0.02511773940345369, 0.023547880690737835, 0.023547880690737835, 0.0282574568288854, 0.02511773940345369, 0.023547880690737835, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.023547880690737835, 0.023547880690737835, 0.0282574568288854, 0.029827315541601257, 0.8178963893249608, 0.750392464678179, 0.029827315541601257, 0.029827315541601257, 0.029827315541601257, 0.029827315541601257, 0.029827315541601257, 0.029827315541601257, 0.029827315541601257, 0.029827315541601257, 0.03139717425431711, 0.03139717425431711, 0.03296703296703297, 0.03296703296703297, 0.03453689167974882, 0.03610675039246468, 0.054945054945054944, 0.06279434850863422, 0.06750392464678179, 0.08320251177394035, 0.10361067503924647, 0.1664050235478807, 0.28100470957613816, 0.5007849293563579], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WIF.gap.json b/pfam_gap_rates/WIF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..686d675b3a8c97f0533f3c53627cf1e57289184a
--- /dev/null
+++ b/pfam_gap_rates/WIF.gap.json
@@ -0,0 +1 @@
+{"family": "WIF", "n_seqs": 148, "length": 146, "gap_rates": [0.5675675675675675, 0.5337837837837838, 0.5135135135135135, 0.5135135135135135, 0.5135135135135135, 0.5135135135135135, 0.5135135135135135, 0.49324324324324326, 0.4797297297297297, 0.44594594594594594, 0.41216216216216217, 0.3581081081081081, 0.33783783783783783, 0.2635135135135135, 0.23648648648648649, 0.19594594594594594, 0.19594594594594594, 0.17567567567567569, 0.17567567567567569, 0.17567567567567569, 0.17567567567567569, 0.17567567567567569, 0.1554054054054054, 0.1554054054054054, 0.1554054054054054, 0.1554054054054054, 0.16216216216216217, 0.1554054054054054, 0.1554054054054054, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.7702702702702703, 0.7837837837837838, 0.7905405405405406, 0.7702702702702703, 0.7702702702702703, 0.14189189189189189, 0.8918918918918919, 0.8918918918918919, 0.8986486486486487, 0.8918918918918919, 0.8918918918918919, 0.8851351351351351, 0.14189189189189189, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.12837837837837837, 0.12162162162162163, 0.12162162162162163, 0.12162162162162163, 0.12162162162162163, 0.12162162162162163, 0.12837837837837837, 0.12837837837837837, 0.12162162162162163, 0.25, 0.16891891891891891, 0.3716216216216216, 0.27702702702702703, 0.9256756756756757, 0.13513513513513514, 0.12837837837837837, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.7027027027027027, 0.13513513513513514, 0.12837837837837837, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.14864864864864866, 0.12162162162162163, 0.11486486486486487, 0.0945945945945946, 0.08108108108108109, 0.18243243243243243, 0.14189189189189189, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.08108108108108109, 0.07432432432432433, 0.07432432432432433, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.07432432432432433, 0.08108108108108109, 0.08108108108108109, 0.08783783783783784, 0.08783783783783784, 0.0945945945945946, 0.0945945945945946, 0.0945945945945946, 0.10135135135135136, 0.14189189189189189, 0.10135135135135136, 0.12837837837837837, 0.12162162162162163, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.20270270270270271, 0.7567567567567568, 0.6351351351351351, 0.3783783783783784, 0.18243243243243243, 0.13513513513513514, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.14189189189189189, 0.14864864864864866, 0.16216216216216217, 0.2905405405405405], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WRKY.gap.json b/pfam_gap_rates/WRKY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d28961742d6c0daa8090df577432b7794ac5cdac
--- /dev/null
+++ b/pfam_gap_rates/WRKY.gap.json
@@ -0,0 +1 @@
+{"family": "WRKY", "n_seqs": 2438, "length": 62, "gap_rates": [0.3584905660377358, 0.034454470877768664, 0.030352748154224774, 0.02912223133716161, 0.02789171452009844, 0.027481542247744052, 0.027071369975389663, 0.026251025430680888, 0.025840853158326498, 0.02543068088597211, 0.02502050861361772, 0.02461033634126333, 0.02461033634126333, 0.021739130434782608, 0.02132895816242822, 0.02091878589007383, 0.02461033634126333, 0.020098441345365054, 0.015996718621821164, 0.011894995898277276, 0.011484823625922888, 0.021739130434782608, 0.03240360951599672, 0.036505332239540604, 0.03691550451189499, 0.036505332239540604, 0.03773584905660377, 0.03732567678424938, 0.1956521739130435, 0.3748974569319114, 0.8621821164889254, 0.844954881050041, 0.036505332239540604, 0.036505332239540604, 0.03691550451189499, 0.036505332239540604, 0.036505332239540604, 0.03691550451189499, 0.0475799835931091, 0.04224774405250205, 0.043478260869565216, 0.044298605414273995, 0.04716981132075472, 0.11771944216570959, 0.19606234618539786, 0.8826907301066448, 0.06685808039376538, 0.06808859721082855, 0.054142739950779326, 0.054142739950779326, 0.054552912223133715, 0.054963084495488104, 0.05619360131255127, 0.05660377358490566, 0.05742411812961444, 0.05824446267432322, 0.0586546349466776, 0.06029532403609516, 0.06070549630844955, 0.07219031993437244, 0.07588187038556193, 0.4109926168990976], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WSD.gap.json b/pfam_gap_rates/WSD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a191740d2906955b0fc8f4ba2fecc45217825b56
--- /dev/null
+++ b/pfam_gap_rates/WSD.gap.json
@@ -0,0 +1 @@
+{"family": "WSD", "n_seqs": 576, "length": 198, "gap_rates": [0.7795138888888888, 0.2065972222222222, 0.14930555555555555, 0.07118055555555555, 0.059027777777777776, 0.059027777777777776, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.052083333333333336, 0.4305555555555556, 0.5902777777777778, 0.6024305555555556, 0.6059027777777778, 0.7829861111111112, 0.7847222222222222, 0.7881944444444444, 0.7916666666666666, 0.8385416666666666, 0.8506944444444444, 0.84375, 0.7934027777777778, 0.7899305555555556, 0.7864583333333334, 0.7829861111111112, 0.6197916666666666, 0.6059027777777778, 0.6024305555555556, 0.5572916666666666, 0.1232638888888889, 0.1267361111111111, 0.06076388888888889, 0.05381944444444445, 0.05381944444444445, 0.05555555555555555, 0.05381944444444445, 0.05381944444444445, 0.05381944444444445, 0.057291666666666664, 0.059027777777777776, 0.08854166666666667, 0.15625, 0.4548611111111111, 0.4392361111111111, 0.4236111111111111, 0.4184027777777778, 0.3993055555555556, 0.4045138888888889, 0.4184027777777778, 0.421875, 0.4375, 0.4600694444444444, 0.3940972222222222, 0.5104166666666666, 0.5208333333333334, 0.5260416666666666, 0.53125, 0.5503472222222222, 0.6475694444444444, 0.6614583333333334, 0.671875, 0.6892361111111112, 0.7048611111111112, 0.7222222222222222, 0.7413194444444444, 0.7569444444444444, 0.7760416666666666, 0.8020833333333334, 0.8246527777777778, 0.8402777777777778, 0.8506944444444444, 0.8611111111111112, 0.8680555555555556, 0.8767361111111112, 0.8819444444444444, 0.8819444444444444, 0.8836805555555556, 0.8888888888888888, 0.8958333333333334, 0.8975694444444444, 0.8975694444444444, 0.90625, 0.9114583333333334, 0.9114583333333334, 0.9149305555555556, 0.9236111111111112, 0.9236111111111112, 0.9253472222222222, 0.9270833333333334, 0.9340277777777778, 0.9427083333333334, 0.9461805555555556, 0.9479166666666666, 0.9479166666666666, 0.9444444444444444, 0.9357638888888888, 0.9288194444444444, 0.9253472222222222, 0.9236111111111112, 0.9236111111111112, 0.9184027777777778, 0.9131944444444444, 0.9114583333333334, 0.9097222222222222, 0.9045138888888888, 0.8975694444444444, 0.8975694444444444, 0.8940972222222222, 0.8854166666666666, 0.8819444444444444, 0.8819444444444444, 0.8784722222222222, 0.8767361111111112, 0.8628472222222222, 0.8559027777777778, 0.8489583333333334, 0.8315972222222222, 0.8125, 0.7916666666666666, 0.7621527777777778, 0.7517361111111112, 0.7395833333333334, 0.7118055555555556, 0.6996527777777778, 0.6770833333333334, 0.6684027777777778, 0.6545138888888888, 0.6423611111111112, 0.5381944444444444, 0.5295138888888888, 0.5225694444444444, 0.515625, 0.5086805555555556, 0.40625, 0.5225694444444444, 0.4947916666666667, 0.4722222222222222, 0.4583333333333333, 0.4722222222222222, 0.4548611111111111, 0.4305555555555556, 0.4097222222222222, 0.4097222222222222, 0.4027777777777778, 0.40625, 0.4045138888888889, 0.4236111111111111, 0.4201388888888889, 0.4079861111111111, 0.4010416666666667, 0.3697916666666667, 0.3506944444444444, 0.3020833333333333, 0.08854166666666667, 0.08159722222222222, 0.0798611111111111, 0.0798611111111111, 0.0798611111111111, 0.0798611111111111, 0.08159722222222222, 0.08506944444444445, 0.08506944444444445, 0.09722222222222222, 0.08506944444444445, 0.08333333333333333, 0.08506944444444445, 0.08854166666666667, 0.08854166666666667, 0.08854166666666667, 0.08854166666666667, 0.08854166666666667, 0.08854166666666667, 0.08854166666666667, 0.0920138888888889, 0.09027777777777778, 0.09027777777777778, 0.0920138888888889, 0.1423611111111111, 0.09027777777777778, 0.0920138888888889, 0.0920138888888889, 0.09375, 0.0954861111111111, 0.09722222222222222, 0.10069444444444445, 0.10590277777777778, 0.1440972222222222, 0.3020833333333333, 0.5, 0.8576388888888888], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WXG100.gap.json b/pfam_gap_rates/WXG100.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60dda27d356abfd4e14922366487f90a9057e68d
--- /dev/null
+++ b/pfam_gap_rates/WXG100.gap.json
@@ -0,0 +1 @@
+{"family": "WXG100", "n_seqs": 965, "length": 89, "gap_rates": [0.8538860103626943, 0.3917098445595855, 0.28186528497409324, 0.18549222797927462, 0.13367875647668392, 0.11709844559585492, 0.09533678756476684, 0.08186528497409326, 0.05699481865284974, 0.05181347150259067, 0.04248704663212435, 0.04145077720207254, 0.03419689119170984, 0.03316062176165803, 0.02694300518134715, 0.024870466321243522, 0.022797927461139896, 0.019689119170984457, 0.017616580310880828, 0.017616580310880828, 0.014507772020725389, 0.013471502590673576, 0.011398963730569948, 0.00932642487046632, 0.007253886010362694, 0.004145077720207254, 0.004145077720207254, 0.0031088082901554403, 0.0031088082901554403, 0.002072538860103627, 0.002072538860103627, 0.002072538860103627, 0.002072538860103627, 0.002072538860103627, 0.0010362694300518134, 0.0062176165803108805, 0.007253886010362694, 0.8186528497409327, 0.016580310880829015, 0.013471502590673576, 0.0, 0.0, 0.0, 0.944041450777202, 0.0, 0.0, 0.0, 0.0, 0.0010362694300518134, 0.0010362694300518134, 0.0010362694300518134, 0.002072538860103627, 0.002072538860103627, 0.002072538860103627, 0.002072538860103627, 0.0031088082901554403, 0.944041450777202, 0.0031088082901554403, 0.0031088082901554403, 0.004145077720207254, 0.0051813471502590676, 0.0051813471502590676, 0.0062176165803108805, 0.0062176165803108805, 0.0062176165803108805, 0.008290155440414507, 0.00932642487046632, 0.00932642487046632, 0.00932642487046632, 0.00932642487046632, 0.011398963730569948, 0.013471502590673576, 0.017616580310880828, 0.01865284974093264, 0.019689119170984457, 0.021761658031088083, 0.022797927461139896, 0.024870466321243522, 0.027979274611398965, 0.03626943005181347, 0.046632124352331605, 0.061139896373056994, 0.08186528497409326, 0.11398963730569948, 0.12642487046632125, 0.15854922279792746, 0.21968911917098446, 0.30466321243523314, 0.6082901554404145], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Wyosine_form.gap.json b/pfam_gap_rates/Wyosine_form.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec15edc39fd6108ae529488175dea35fbe65d4ff
--- /dev/null
+++ b/pfam_gap_rates/Wyosine_form.gap.json
@@ -0,0 +1 @@
+{"family": "Wyosine_form", "n_seqs": 370, "length": 76, "gap_rates": [0.518918918918919, 0.0918918918918919, 0.051351351351351354, 0.032432432432432434, 0.01891891891891892, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.20540540540540542, 0.20540540540540542, 0.013513513513513514, 0.010810810810810811, 0.013513513513513514, 0.20810810810810812, 0.754054054054054, 0.7783783783783784, 0.4297297297297297, 0.20540540540540542, 0.20540540540540542, 0.20540540540540542, 0.20270270270270271, 0.2, 0.2, 0.2, 0.2, 0.1972972972972973, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002702702702702703, 0.002702702702702703, 0.8, 0.8, 0.8, 0.7945945945945946, 0.005405405405405406, 0.008108108108108109, 0.013513513513513514, 0.016216216216216217, 0.01891891891891892, 0.021621621621621623, 0.02972972972972973, 0.8432432432432433, 0.8891891891891892, 0.8648648648648649, 0.7189189189189189, 0.1918918918918919, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.03513513513513514, 0.8945945945945946, 0.8945945945945946, 0.06486486486486487, 0.1, 0.10540540540540541, 0.11621621621621622, 0.15945945945945947, 0.23783783783783785, 0.5378378378378378], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/X8.gap.json b/pfam_gap_rates/X8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7f4b6aa1a4b30522802622ae7b6d2d73e4e7bb4
--- /dev/null
+++ b/pfam_gap_rates/X8.gap.json
@@ -0,0 +1 @@
+{"family": "X8", "n_seqs": 1521, "length": 82, "gap_rates": [0.4812623274161736, 0.049967126890203814, 0.03353057199211045, 0.032215647600262985, 0.03155818540433925, 0.032215647600262985, 0.03550295857988166, 0.028928336620644313, 0.02695595003287311, 0.9125575279421433, 0.8468113083497699, 0.02564102564102564, 0.030243261012491782, 0.02695595003287311, 0.027613412228796843, 0.026298487836949377, 0.021696252465483234, 0.01972386587771203, 0.018408941485864562, 0.015121630506245891, 0.015121630506245891, 0.013149243918474688, 0.013149243918474688, 0.013149243918474688, 0.012491781722550954, 0.011834319526627219, 0.6134122287968442, 0.3780407626561473, 0.008547008547008548, 0.007232084155161078, 0.9230769230769231, 0.9026955950032873, 0.006574621959237344, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.0046022353714661405, 0.0046022353714661405, 0.005259697567389875, 0.8685075608152532, 0.8665351742274819, 0.8658777120315582, 0.8645627876397107, 0.8573307034845496, 0.011834319526627219, 0.014464168310322156, 0.011176857330703484, 0.011176857330703484, 0.01051939513477975, 0.18803418803418803, 0.005917159763313609, 0.005917159763313609, 0.0039447731755424065, 0.003287310979618672, 0.0039447731755424065, 0.0039447731755424065, 0.0039447731755424065, 0.0039447731755424065, 0.005917159763313609, 0.006574621959237344, 0.007889546351084813, 0.009861932938856016, 0.008547008547008548, 0.008547008547008548, 0.009204470742932281, 0.01051939513477975, 0.08744247205785667, 0.02827087442472058, 0.03944773175542406, 0.03418803418803419, 0.03418803418803419, 0.03287310979618672, 0.030900723208415515, 0.03155818540433925, 0.03747534516765286, 0.0381328073635766, 0.045364891518737675, 0.05456936226166995, 0.0782380013149244, 0.556870479947403], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XAP5.gap.json b/pfam_gap_rates/XAP5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..699076fd3fce5bab7a4e047345936495275821e8
--- /dev/null
+++ b/pfam_gap_rates/XAP5.gap.json
@@ -0,0 +1 @@
+{"family": "XAP5", "n_seqs": 300, "length": 339, "gap_rates": [0.58, 0.4266666666666667, 0.37666666666666665, 0.3566666666666667, 0.29, 0.2733333333333333, 0.27666666666666667, 0.27666666666666667, 0.28, 0.2733333333333333, 0.28, 0.28, 0.3333333333333333, 0.29, 0.30666666666666664, 0.27, 0.24333333333333335, 0.23333333333333334, 0.23, 0.23333333333333334, 0.2833333333333333, 0.26666666666666666, 0.9, 0.95, 0.93, 0.85, 0.53, 0.5533333333333333, 0.4666666666666667, 0.43666666666666665, 0.4166666666666667, 0.38666666666666666, 0.37333333333333335, 0.3466666666666667, 0.31333333333333335, 0.3, 0.2966666666666667, 0.30333333333333334, 0.3433333333333333, 0.39, 0.30333333333333334, 0.6866666666666666, 0.7233333333333334, 0.74, 0.7733333333333333, 0.8066666666666666, 0.87, 0.9, 0.9266666666666666, 0.9466666666666667, 0.94, 0.9133333333333333, 0.89, 0.8566666666666667, 0.7833333333333333, 0.75, 0.73, 0.6933333333333334, 0.6633333333333333, 0.41333333333333333, 0.5433333333333333, 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\ No newline at end of file
diff --git a/pfam_gap_rates/XLF.gap.json b/pfam_gap_rates/XLF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6aa6a300352e479f8c428327727b264c7487483
--- /dev/null
+++ b/pfam_gap_rates/XLF.gap.json
@@ -0,0 +1 @@
+{"family": "XLF", "n_seqs": 143, "length": 210, "gap_rates": [0.5034965034965035, 0.27972027972027974, 0.3076923076923077, 0.2727272727272727, 0.26573426573426573, 0.2517482517482518, 0.2517482517482518, 0.25874125874125875, 0.24475524475524477, 0.2727272727272727, 0.4755244755244755, 0.7202797202797203, 0.916083916083916, 0.8881118881118881, 0.5384615384615384, 0.4195804195804196, 0.16783216783216784, 0.15384615384615385, 0.14685314685314685, 0.13986013986013987, 0.13986013986013987, 0.13986013986013987, 0.13286713286713286, 0.13286713286713286, 0.13286713286713286, 0.8461538461538461, 0.8111888111888111, 0.11888111888111888, 0.11888111888111888, 0.11188811188811189, 0.11188811188811189, 0.1048951048951049, 0.1048951048951049, 0.1048951048951049, 0.0979020979020979, 0.09090909090909091, 0.09090909090909091, 0.07692307692307693, 0.07692307692307693, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.06293706293706294, 0.06293706293706294, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.9300699300699301, 0.9370629370629371, 0.8951048951048951, 0.055944055944055944, 0.04895104895104895, 0.04895104895104895, 0.08391608391608392, 0.055944055944055944, 0.06293706293706294, 0.4195804195804196, 0.3916083916083916, 0.4195804195804196, 0.4125874125874126, 0.3706293706293706, 0.9300699300699301, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06293706293706294, 0.055944055944055944, 0.04895104895104895, 0.055944055944055944, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.9020979020979021, 0.9090909090909091, 0.9440559440559441, 0.9090909090909091, 0.8811188811188811, 0.16783216783216784, 0.13286713286713286, 0.11888111888111888, 0.09090909090909091, 0.08391608391608392, 0.0979020979020979, 0.5034965034965035, 0.46853146853146854, 0.4405594405594406, 0.35664335664335667, 0.8531468531468531, 0.13986013986013987, 0.1048951048951049, 0.1048951048951049, 0.16083916083916083, 0.1888111888111888, 0.1958041958041958, 0.8041958041958042, 0.8881118881118881, 0.8601398601398601, 0.6643356643356644, 0.4195804195804196, 0.36363636363636365, 0.21678321678321677, 0.20279720279720279, 0.1258741258741259, 0.916083916083916, 0.9230769230769231, 0.8951048951048951, 0.055944055944055944, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.20279720279720279, 0.1888111888111888, 0.14685314685314685, 0.14685314685314685, 0.09090909090909091, 0.08391608391608392, 0.13986013986013987, 0.46153846153846156, 0.3916083916083916, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.8741258741258742, 0.916083916083916, 0.9020979020979021, 0.8601398601398601, 0.03496503496503497, 0.055944055944055944, 0.055944055944055944, 0.04895104895104895, 0.055944055944055944, 0.04195804195804196, 0.8461538461538461, 0.9230769230769231, 0.8671328671328671, 0.8321678321678322, 0.04895104895104895, 0.04895104895104895, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06293706293706294, 0.06993006993006994, 0.08391608391608392, 0.08391608391608392, 0.11888111888111888, 0.13286713286713286, 0.13986013986013987, 0.13986013986013987, 0.13986013986013987, 0.15384615384615385, 0.15384615384615385, 0.16083916083916083, 0.16783216783216784, 0.16783216783216784, 0.16783216783216784, 0.17482517482517482, 0.17482517482517482, 0.18181818181818182, 0.1888111888111888, 0.1888111888111888, 0.1958041958041958, 0.1958041958041958, 0.1958041958041958, 0.1888111888111888, 0.43356643356643354, 0.46153846153846156, 0.46853146853146854, 0.46853146853146854, 0.23076923076923078, 0.22377622377622378, 0.23076923076923078, 0.2517482517482518, 0.25874125874125875, 0.26573426573426573, 0.27972027972027974, 0.3006993006993007, 0.32167832167832167, 0.3776223776223776, 0.4195804195804196, 0.6013986013986014, 0.6223776223776224, 0.6363636363636364], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XPA_C.gap.json b/pfam_gap_rates/XPA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04866ce37097076ccf213e6329cbc9982e0bf6da
--- /dev/null
+++ b/pfam_gap_rates/XPA_C.gap.json
@@ -0,0 +1 @@
+{"family": "XPA_C", "n_seqs": 263, "length": 52, "gap_rates": [0.34220532319391633, 0.09505703422053231, 0.08365019011406843, 0.07604562737642585, 0.049429657794676805, 0.049429657794676805, 0.04182509505703422, 0.03802281368821293, 0.03802281368821293, 0.03802281368821293, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.022813688212927757, 0.011406844106463879, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.1520912547528517, 0.1482889733840304, 0.6463878326996197, 0.1520912547528517, 0.015209125475285171, 0.015209125475285171, 0.019011406844106463, 0.015209125475285171, 0.015209125475285171, 0.015209125475285171, 0.015209125475285171, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.049429657794676805, 0.053231939163498096, 0.022813688212927757, 0.049429657794676805, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.049429657794676805, 0.060836501901140684, 0.1444866920152091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YTV.gap.json b/pfam_gap_rates/YTV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f677560e21cc28c79d9d44a9230cf7169c42537
--- /dev/null
+++ b/pfam_gap_rates/YTV.gap.json
@@ -0,0 +1 @@
+{"family": "YTV", "n_seqs": 122, "length": 43, "gap_rates": [0.28688524590163933, 0.1721311475409836, 0.13934426229508196, 0.09016393442622951, 0.04918032786885246, 0.040983606557377046, 0.01639344262295082, 0.00819672131147541, 0.00819672131147541, 0.03278688524590164, 0.03278688524590164, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.1721311475409836, 0.1721311475409836, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00819672131147541, 0.00819672131147541, 0.0, 0.0, 0.22950819672131148, 0.22950819672131148, 0.00819672131147541, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.05737704918032787, 0.13114754098360656, 0.13114754098360656, 0.14754098360655737, 0.1557377049180328, 0.20491803278688525, 0.45901639344262296], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Y_phosphatase2.gap.json b/pfam_gap_rates/Y_phosphatase2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2140865bf693ab39997feaabf2aed7a338e5533
--- /dev/null
+++ b/pfam_gap_rates/Y_phosphatase2.gap.json
@@ -0,0 +1 @@
+{"family": "Y_phosphatase2", "n_seqs": 553, "length": 188, "gap_rates": [0.6003616636528029, 0.4050632911392405, 0.24773960216998192, 0.20614828209764918, 0.18264014466546113, 0.16455696202531644, 0.16455696202531644, 0.15009041591320071, 0.12658227848101267, 0.11392405063291139, 0.10849909584086799, 0.10307414104882459, 0.9403254972875226, 0.09945750452079566, 0.09584086799276673, 0.09584086799276673, 0.09403254972875226, 0.09403254972875226, 0.09403254972875226, 0.09584086799276673, 0.09403254972875226, 0.09584086799276673, 0.09764918625678119, 0.09403254972875226, 0.09403254972875226, 0.0922242314647378, 0.0922242314647378, 0.09041591320072333, 0.09041591320072333, 0.09041591320072333, 0.0922242314647378, 0.0922242314647378, 0.09041591320072333, 0.09041591320072333, 0.09041591320072333, 0.08860759493670886, 0.0867992766726944, 0.0867992766726944, 0.0867992766726944, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.14285714285714285, 0.11573236889692586, 0.10126582278481013, 0.09764918625678119, 0.0922242314647378, 0.09945750452079566, 0.10669077757685352, 0.10488245931283906, 0.8698010849909584, 0.09945750452079566, 0.11211573236889692, 0.10307414104882459, 0.09584086799276673, 0.0922242314647378, 0.0922242314647378, 0.0922242314647378, 0.09584086799276673, 0.09584086799276673, 0.09403254972875226, 0.09403254972875226, 0.09584086799276673, 0.09584086799276673, 0.09764918625678119, 0.09945750452079566, 0.10126582278481013, 0.10488245931283906, 0.10488245931283906, 0.10849909584086799, 0.3128390596745027, 0.7938517179023508, 0.8553345388788427, 0.8969258589511754, 0.9041591320072333, 0.9168173598553345, 0.9276672694394213, 0.9367088607594937, 0.9403254972875226, 0.9421338155515371, 0.9493670886075949, 0.9493670886075949, 0.9493670886075949, 0.9439421338155516, 0.9403254972875226, 0.9403254972875226, 0.9330922242314648, 0.9222423146473779, 0.9113924050632911, 0.9005424954792043, 0.8824593128390597, 0.8264014466546112, 0.7613019891500904, 0.23869801084990958, 0.1717902350813743, 0.14647377938517178, 0.11934900542495479, 0.10488245931283906, 0.10126582278481013, 0.09764918625678119, 0.09764918625678119, 0.09403254972875226, 0.09403254972875226, 0.09403254972875226, 0.0922242314647378, 0.09403254972875226, 0.09041591320072333, 0.09403254972875226, 0.09403254972875226, 0.09041591320072333, 0.0922242314647378, 0.09041591320072333, 0.09041591320072333, 0.09041591320072333, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08499095840867993, 0.12477396021699819, 0.12477396021699819, 0.12296564195298372, 0.11392405063291139, 0.11211573236889692, 0.081374321880651, 0.08318264014466546, 0.08318264014466546, 0.0867992766726944, 0.09584086799276673, 0.09945750452079566, 0.10126582278481013, 0.10126582278481013, 0.10307414104882459, 0.10488245931283906, 0.9276672694394213, 0.10669077757685352, 0.10669077757685352, 0.11030741410488246, 0.10849909584086799, 0.10849909584086799, 0.10849909584086799, 0.11030741410488246, 0.11030741410488246, 0.11030741410488246, 0.11211573236889692, 0.11573236889692586, 0.11573236889692586, 0.11754068716094032, 0.12477396021699819, 0.13924050632911392, 0.14828209764918626, 0.15732368896925858, 0.1609403254972875, 0.162748643761302, 0.16455696202531644, 0.891500904159132, 0.2730560578661845, 0.19891500904159132, 0.18806509945750452, 0.19168173598553345, 0.189873417721519, 0.19168173598553345, 0.19168173598553345, 0.19349005424954793, 0.19529837251356238, 0.19529837251356238, 0.19529837251356238, 0.19891500904159132, 0.2007233273056058, 0.21518987341772153, 0.24050632911392406, 0.2730560578661845, 0.3092224231464738, 0.3670886075949367, 0.4321880650994575, 0.5244122965641953, 0.6528028933092225, 0.6980108499095841, 0.7450271247739603, 0.8625678119349005, 0.8155515370705244, 0.840867992766727, 0.8589511754068716, 0.8734177215189873, 0.9204339963833634], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Yae1_N.gap.json b/pfam_gap_rates/Yae1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bb6b3fbe93444b1fcf879f0881d999b520c2f2a
--- /dev/null
+++ b/pfam_gap_rates/Yae1_N.gap.json
@@ -0,0 +1 @@
+{"family": "Yae1_N", "n_seqs": 411, "length": 39, "gap_rates": [0.09002433090024331, 0.0535279805352798, 0.0340632603406326, 0.0267639902676399, 0.012165450121654502, 0.009732360097323601, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.004866180048661801, 0.004866180048661801, 0.0024330900243309003, 0.0024330900243309003, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004866180048661801, 0.004866180048661801, 0.009732360097323601, 0.012165450121654502, 0.029197080291970802, 0.0364963503649635, 0.051094890510948905, 0.06326034063260341, 0.1435523114355231, 0.46715328467153283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YajC.gap.json b/pfam_gap_rates/YajC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d540b9491ce3b6d2e83addf14c4b07a5254d9a3
--- /dev/null
+++ b/pfam_gap_rates/YajC.gap.json
@@ -0,0 +1 @@
+{"family": "YajC", "n_seqs": 1710, "length": 83, "gap_rates": [0.9157894736842105, 0.4497076023391813, 0.12573099415204678, 0.05964912280701754, 0.02982456140350877, 0.017543859649122806, 0.01695906432748538, 0.014035087719298246, 0.012280701754385965, 0.013450292397660818, 0.011111111111111112, 0.010526315789473684, 0.011111111111111112, 0.025146198830409357, 0.010526315789473684, 0.012280701754385965, 0.008187134502923977, 0.009941520467836258, 0.010526315789473684, 0.00760233918128655, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.006432748538011696, 0.005847953216374269, 0.005847953216374269, 0.007017543859649123, 0.00760233918128655, 0.007017543859649123, 0.005847953216374269, 0.0023391812865497076, 0.0011695906432748538, 0.0005847953216374269, 0.0005847953216374269, 0.0005847953216374269, 0.0011695906432748538, 0.0005847953216374269, 0.0005847953216374269, 0.0005847953216374269, 0.0005847953216374269, 0.0005847953216374269, 0.0005847953216374269, 0.004093567251461989, 0.0005847953216374269, 0.0035087719298245615, 0.0005847953216374269, 0.0005847953216374269, 0.0005847953216374269, 0.0005847953216374269, 0.0005847953216374269, 0.0011695906432748538, 0.0017543859649122807, 0.0023391812865497076, 0.0023391812865497076, 0.0023391812865497076, 0.8865497076023392, 0.0023391812865497076, 0.006432748538011696, 0.00935672514619883, 0.9245614035087719, 0.9017543859649123, 0.008187134502923977, 0.004093567251461989, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.13333333333333333, 0.48771929824561405, 0.6333333333333333, 0.35906432748538014, 0.0871345029239766, 0.006432748538011696, 0.004678362573099415, 0.004678362573099415, 0.005263157894736842, 0.005263157894736842, 0.005847953216374269, 0.007017543859649123, 0.008771929824561403, 0.014035087719298246, 0.02865497076023392, 0.14327485380116958, 0.8637426900584795], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YceG.gap.json b/pfam_gap_rates/YceG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1226ddc6193088e21cde64c249b8509cdf130a6f
--- /dev/null
+++ b/pfam_gap_rates/YceG.gap.json
@@ -0,0 +1 @@
+{"family": "YceG", "n_seqs": 2189, "length": 363, "gap_rates": [0.4298766560073093, 0.187756966651439, 0.10415714938328004, 0.09913202375513934, 0.09319323892188214, 0.0877112836911832, 0.08999543170397442, 0.09273640931932389, 0.07857469164001828, 0.07720420283234354, 0.0767473732297853, 0.0758337140246688, 0.0758337140246688, 0.0758337140246688, 0.07537688442211055, 0.07400639561443581, 0.07400639561443581, 0.07948835084513477, 0.08542713567839195, 0.08131566925536775, 0.07446322521699406, 0.0708085883965281, 0.0749200548195523, 0.08222932846048424, 0.07400639561443581, 0.07263590680676107, 0.07035175879396985, 0.06852444038373687, 0.07994518044769301, 0.07400639561443581, 0.06898126998629511, 0.0657834627683874, 0.06532663316582915, 0.06669712197350389, 0.06806761078117862, 0.11329374143444496, 0.2494289629968022, 0.08542713567839195, 0.07857469164001828, 0.06624029237094564, 0.06258565555047967, 0.06212882594792143, 0.06167199634536318, 0.06121516674280494, 0.06121516674280494, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ycf66_N.gap.json b/pfam_gap_rates/Ycf66_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bbda7a1105ed8ac66c58bbff1ba8c4f2827d9577
--- /dev/null
+++ b/pfam_gap_rates/Ycf66_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ycf66_N", "n_seqs": 122, "length": 76, "gap_rates": [0.6885245901639344, 0.09016393442622951, 0.06557377049180328, 0.05737704918032787, 0.05737704918032787, 0.040983606557377046, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.01639344262295082, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00819672131147541, 0.00819672131147541, 0.07377049180327869, 0.02459016393442623, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.040983606557377046, 0.04918032786885246, 0.05737704918032787, 0.06557377049180328, 0.06557377049180328, 0.07377049180327869], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YdjO.gap.json b/pfam_gap_rates/YdjO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96e308d65c2d52a090fb86edbae17299a53459b5
--- /dev/null
+++ b/pfam_gap_rates/YdjO.gap.json
@@ -0,0 +1 @@
+{"family": "YdjO", "n_seqs": 106, "length": 60, "gap_rates": [0.42452830188679247, 0.36792452830188677, 0.2169811320754717, 0.18867924528301888, 0.16037735849056603, 0.1509433962264151, 0.1320754716981132, 0.11320754716981132, 0.08490566037735849, 0.07547169811320754, 0.0660377358490566, 0.04716981132075472, 0.04716981132075472, 0.02830188679245283, 0.9433962264150944, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.018867924528301886, 0.02830188679245283, 0.009433962264150943, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009433962264150943, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.1320754716981132, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009433962264150943, 0.0660377358490566, 0.10377358490566038, 0.24528301886792453], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YgbA_NO.gap.json b/pfam_gap_rates/YgbA_NO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e87a3b205ba542f1140b37d1f0596e4badeb357
--- /dev/null
+++ b/pfam_gap_rates/YgbA_NO.gap.json
@@ -0,0 +1 @@
+{"family": "YgbA_NO", "n_seqs": 201, "length": 123, "gap_rates": [0.7960199004975125, 0.25870646766169153, 0.14427860696517414, 0.06467661691542288, 0.05472636815920398, 0.04975124378109453, 0.04975124378109453, 0.04975124378109453, 0.04975124378109453, 0.04975124378109453, 0.04975124378109453, 0.04975124378109453, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.7711442786069652, 0.8258706467661692, 0.8706467661691543, 0.8805970149253731, 0.9203980099502488, 0.9253731343283582, 0.9353233830845771, 0.9353233830845771, 0.945273631840796, 0.9353233830845771, 0.9303482587064676, 0.9203980099502488, 0.900497512437811, 0.8706467661691543, 0.8308457711442786, 0.8009950248756219, 0.746268656716418, 0.5970149253731343, 0.35323383084577115, 0.08955223880597014, 0.06965174129353234, 0.04477611940298507, 0.029850746268656716, 0.024875621890547265, 0.01990049751243781, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.024875621890547265, 0.0845771144278607, 0.01990049751243781, 0.009950248756218905, 0.014925373134328358, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.0, 0.0, 0.0, 0.0, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.014925373134328358, 0.024875621890547265, 0.024875621890547265, 0.05472636815920398, 0.06467661691542288, 0.07462686567164178, 0.07960199004975124, 0.07960199004975124, 0.07960199004975124, 0.07960199004975124, 0.07960199004975124, 0.07960199004975124, 0.07960199004975124, 0.07960199004975124, 0.10945273631840796, 0.12437810945273632, 0.19900497512437812, 0.3034825870646766, 0.3681592039800995, 0.417910447761194, 0.48258706467661694, 0.5124378109452736, 0.5472636815920398, 0.6318407960199005, 0.736318407960199, 0.9104477611940298], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YibE_F.gap.json b/pfam_gap_rates/YibE_F.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa6548c1e859fb7271bdf89f0a4073d817b5b605
--- /dev/null
+++ b/pfam_gap_rates/YibE_F.gap.json
@@ -0,0 +1 @@
+{"family": "YibE_F", "n_seqs": 664, "length": 244, "gap_rates": [0.6189759036144579, 0.19578313253012047, 0.061746987951807226, 0.03614457831325301, 0.03463855421686747, 0.03463855421686747, 0.03313253012048193, 0.03313253012048193, 0.03313253012048193, 0.03313253012048193, 0.03313253012048193, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.0286144578313253, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.02710843373493976, 0.025602409638554216, 0.025602409638554216, 0.025602409638554216, 0.025602409638554216, 0.025602409638554216, 0.8629518072289156, 0.0572289156626506, 0.0286144578313253, 0.025602409638554216, 0.025602409638554216, 0.19728915662650603, 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\ No newline at end of file
diff --git a/pfam_gap_rates/YicC_N.gap.json b/pfam_gap_rates/YicC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2891b0179b29e867aebf4e6b713c8d53764a6c1a
--- /dev/null
+++ b/pfam_gap_rates/YicC_N.gap.json
@@ -0,0 +1 @@
+{"family": "YicC_N", "n_seqs": 1218, "length": 168, "gap_rates": [0.2947454844006568, 0.15270935960591134, 0.10755336617405582, 0.015599343185550082, 0.015599343185550082, 0.015599343185550082, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.016420361247947456, 0.15270935960591134, 0.020525451559934318, 0.018883415435139574, 0.9466338259441708, 0.8284072249589491, 0.016420361247947456, 0.012315270935960592, 0.011494252873563218, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.0090311986863711, 0.008210180623973728, 0.008210180623973728, 0.006568144499178982, 0.006568144499178982, 0.006568144499178982, 0.008210180623973728, 0.005747126436781609, 0.006568144499178982, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.006568144499178982, 0.005747126436781609, 0.005747126436781609, 0.008210180623973728, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.006568144499178982, 0.0049261083743842365, 0.0049261083743842365, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.004105090311986864, 0.004105090311986864, 0.3735632183908046, 0.05090311986863711, 0.013957307060755337, 0.005747126436781609, 0.004105090311986864, 0.004105090311986864, 0.004105090311986864, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.0049261083743842365, 0.003284072249589491, 0.004105090311986864, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.003284072249589491, 0.0049261083743842365, 0.004105090311986864, 0.010673234811165846, 0.009852216748768473, 0.011494252873563218, 0.008210180623973728, 0.8152709359605911, 0.014778325123152709, 0.9310344827586207, 0.32676518883415434, 0.03776683087027915, 0.9482758620689655, 0.018883415435139574, 0.014778325123152709, 0.007389162561576354, 0.004105090311986864, 0.004105090311986864, 0.004105090311986864, 0.004105090311986864, 0.004105090311986864, 0.004105090311986864, 0.004105090311986864, 0.006568144499178982, 0.005747126436781609, 0.006568144499178982, 0.004105090311986864, 0.0049261083743842365, 0.8653530377668309, 0.9384236453201971, 0.7717569786535303, 0.025451559934318555, 0.5730706075533661, 0.2044334975369458, 0.8916256157635468, 0.05582922824302135, 0.030377668308702793, 0.008210180623973728, 0.7036124794745484, 0.9154351395730707, 0.38095238095238093, 0.04351395730706076, 0.11904761904761904, 0.024630541871921183, 0.6995073891625616, 0.9154351395730707, 0.37110016420361247, 0.0090311986863711, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.005747126436781609, 0.006568144499178982, 0.006568144499178982, 0.006568144499178982, 0.006568144499178982, 0.006568144499178982, 0.006568144499178982, 0.006568144499178982, 0.006568144499178982, 0.008210180623973728, 0.017241379310344827, 0.17898193760262726], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YkuD.gap.json b/pfam_gap_rates/YkuD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5a1c47e7a5175cd6ffd0a671423013fee591882
--- /dev/null
+++ b/pfam_gap_rates/YkuD.gap.json
@@ -0,0 +1 @@
+{"family": "YkuD", "n_seqs": 4685, "length": 201, "gap_rates": [0.6275346851654215, 0.33895410885805766, 0.19423692636072573, 0.15731056563500534, 0.13553895410885805, 0.1240128068303095, 0.11547491995731056, 0.10907150480256136, 0.10181430096051228, 0.5109925293489861, 0.13404482390608324, 0.09903948772678763, 0.4034151547491996, 0.08537886872998933, 0.08388473852721451, 0.1255069370330843, 0.07982924226254003, 0.07449306296691569, 0.0736392742796158, 0.0712913553895411, 0.9319103521878335, 0.9474919957310566, 0.9165421558164354, 0.07321237993596585, 0.06510138740661686, 0.06937033084311633, 0.045464247598719316, 0.03799359658484525, 0.0384204909284952, 0.9372465314834578, 0.02838847385272145, 0.02689434364994664, 0.025186766275346852, 0.017716115261472785, 0.7506937033084312, 0.7694770544290288, 0.8593383137673426, 0.9457844183564568, 0.8215581643543223, 0.7635005336179296, 0.7372465314834579, 0.7205976520811099, 0.5491995731056564, 0.4983991462113127, 0.2488794023479189, 0.22540021344717182, 0.07043756670224119, 0.02582710779082177, 0.014514407684098186, 0.014087513340448238, 0.013874066168623266, 0.013660618996798293, 0.013660618996798293, 0.013233724653148345, 0.013233724653148345, 0.013233724653148345, 0.013233724653148345, 0.013233724653148345, 0.15304162219850587, 0.15048025613660618, 0.09541088580576307, 0.08836712913553896, 0.08495197438633938, 0.0832443970117396, 0.0823906083244397, 0.3048025613660619, 0.3383137673425827, 0.25635005336179295, 0.2256136606189968, 0.20939167556029883, 0.20384204909284953, 0.23393810032017076, 0.27342582710779084, 0.23799359658484526, 0.24098185699039487, 0.23564567769477054, 0.24759871931696906, 0.24951974386339382, 0.25400213447171827, 0.2529348986125934, 0.23009605122732124, 0.24759871931696906, 0.3257203842049093, 0.3272145144076841, 0.31312700106723584, 0.3274279615795091, 0.33938100320170755, 0.40789754535752404, 0.4384204909284952, 0.5993596584845251, 0.6407684098185699, 0.663820704375667, 0.6781216648879402, 0.7050160085378868, 0.624332977588047, 0.6781216648879402, 0.7186766275346852, 0.7374599786552828, 0.7645677694770544, 0.7869797225186766, 0.7987193169690502, 0.8153681963713981, 0.8226254002134472, 0.8313767342582711, 0.8418356456776948, 0.8450373532550693, 0.8512273212379936, 0.855496264674493, 0.8601921024546425, 0.8896478121664888, 0.9052294557097118, 0.9282817502668089, 0.9457844183564568, 0.9112059765208111, 0.8939167556029882, 0.8849519743863394, 0.8572038420490928, 0.8527214514407684, 0.8490928495197438, 0.8433297758804695, 0.8405549626467449, 0.8258271077908218, 0.8196371398078975, 0.8068303094983992, 0.7906083244397012, 0.7782283884738527, 0.7457844183564568, 0.7240128068303096, 0.7030949839914621, 0.6729989327641409, 0.5583778014941302, 0.512059765208111, 0.4369263607257204, 0.351974386339381, 0.28132337246531486, 0.2175026680896478, 0.11227321237993597, 0.08452508004268944, 0.05549626467449306, 0.03927427961579509, 0.032017075773746, 0.023479188900747065, 0.017502668089647812, 0.008537886872998933, 0.006189967982924227, 0.006189967982924227, 0.00576307363927428, 0.005336179295624333, 0.26232657417289224, 0.25400213447171827, 0.04183564567769477, 0.0384204909284952, 0.0343649946638207, 0.09903948772678763, 0.13233724653148346, 0.21344717182497333, 0.35325506937033085, 0.4209178228388474, 0.7513340448239061, 0.6695837780149413, 0.8091782283884739, 0.8834578441835645, 0.9148345784418357, 0.9421558164354322, 0.9346851654215582, 0.9052294557097118, 0.8552828175026681, 0.6896478121664888, 0.4548559231590181, 0.22326574172892208, 0.022198505869797224, 0.010458911419423693, 0.9212379935965849, 0.8734258271077908, 0.006830309498399146, 0.0066168623265741725, 0.0066168623265741725, 0.0066168623265741725, 0.006830309498399146, 0.007043756670224119, 0.007043756670224119, 0.11547491995731056, 0.12059765208110992, 0.011312700106723587, 0.013874066168623266, 0.013874066168623266, 0.015154749199573105, 0.018783351120597654, 0.01985058697972252, 0.022625400213447174, 0.027534685165421558, 0.029882604055496264, 0.03970117395944504, 0.05272145144076841, 0.09391675560298826, 0.14215581643543224, 0.17950907150480255, 0.22049092849519744, 0.24332977588046958, 0.3016008537886873, 0.3784418356456777], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YoaP.gap.json b/pfam_gap_rates/YoaP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6f7d026f78b547e0a1ad29029c96115321092c9
--- /dev/null
+++ b/pfam_gap_rates/YoaP.gap.json
@@ -0,0 +1 @@
+{"family": "YoaP", "n_seqs": 161, "length": 46, "gap_rates": [0.4161490683229814, 0.11801242236024845, 0.055900621118012424, 0.031055900621118012, 0.024844720496894408, 0.024844720496894408, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.012422360248447204, 0.006211180124223602, 0.006211180124223602, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.012422360248447204, 0.006211180124223602, 0.9130434782608695, 0.906832298136646, 0.012422360248447204, 0.031055900621118012, 0.031055900621118012, 0.037267080745341616, 0.08695652173913043, 0.32298136645962733], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YtxH.gap.json b/pfam_gap_rates/YtxH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a90a9a2a0ee45ad4c52ef84b272589e72a2880dc
--- /dev/null
+++ b/pfam_gap_rates/YtxH.gap.json
@@ -0,0 +1 @@
+{"family": "YtxH", "n_seqs": 844, "length": 104, "gap_rates": [0.6338862559241706, 0.16350710900473933, 0.061611374407582936, 0.022511848341232227, 0.02014218009478673, 0.017772511848341232, 0.014218009478672985, 0.011848341232227487, 0.0071090047393364926, 0.0035545023696682463, 0.002369668246445498, 0.002369668246445498, 0.002369668246445498, 0.001184834123222749, 0.001184834123222749, 0.001184834123222749, 0.001184834123222749, 0.002369668246445498, 0.001184834123222749, 0.001184834123222749, 0.001184834123222749, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001184834123222749, 0.001184834123222749, 0.9395734597156398, 0.943127962085308, 0.943127962085308, 0.9395734597156398, 0.0035545023696682463, 0.0071090047393364926, 0.008293838862559242, 0.01066350710900474, 0.018957345971563982, 0.018957345971563982, 0.018957345971563982, 0.02132701421800948, 0.034360189573459717, 0.034360189573459717, 0.03672985781990521, 0.10900473933649289, 0.12914691943127962, 0.11611374407582939, 0.11966824644549763, 0.20971563981042654, 0.2109004739336493, 0.2132701421800948, 0.2014218009478673, 0.504739336492891, 0.5675355450236966, 0.5924170616113744, 0.754739336492891, 0.7665876777251185, 0.8270142180094787, 0.830568720379147, 0.8661137440758294, 0.8755924170616114, 0.9111374407582938, 0.9253554502369669, 0.9383886255924171, 0.943127962085308, 0.9383886255924171, 0.9135071090047393, 0.9052132701421801, 0.8696682464454977, 0.8625592417061612, 0.8293838862559242, 0.7855450236966824, 0.7606635071090048, 0.6018957345971564, 0.5841232227488151, 0.5118483412322274, 0.4976303317535545, 0.11848341232227488, 0.19312796208530805, 0.16943127962085308, 0.1646919431279621, 0.15639810426540285, 0.1528436018957346, 0.16113744075829384, 0.16350710900473933, 0.16943127962085308, 0.18601895734597157, 0.21208530805687204, 0.22037914691943128, 0.24881516587677724, 0.28791469194312796, 0.3187203791469194, 0.3400473933649289, 0.38388625592417064, 0.43838862559241704, 0.48578199052132703, 0.556872037914692, 0.6670616113744076, 0.7606635071090048, 0.9478672985781991], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YuiB.gap.json b/pfam_gap_rates/YuiB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5effd5cd9f90701972b6bda1b4b3af16eed55e4b
--- /dev/null
+++ b/pfam_gap_rates/YuiB.gap.json
@@ -0,0 +1 @@
+{"family": "YuiB", "n_seqs": 102, "length": 106, "gap_rates": [0.5098039215686274, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.7843137254901961, 0.7843137254901961, 0.7843137254901961, 0.7843137254901961, 0.7352941176470589, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.10784313725490197, 0.11764705882352941, 0.11764705882352941, 0.13725490196078433, 0.1568627450980392, 0.2647058823529412, 0.3431372549019608, 0.35294117647058826, 0.35294117647058826, 0.35294117647058826, 0.35294117647058826, 0.35294117647058826, 0.35294117647058826, 0.3431372549019608, 0.35294117647058826, 0.35294117647058826, 0.35294117647058826, 0.3333333333333333, 0.1568627450980392, 0.14705882352941177, 0.14705882352941177, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.09803921568627451, 0.08823529411764706, 0.08823529411764706, 0.0784313725490196, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Z1.gap.json b/pfam_gap_rates/Z1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbc5af4ac39ea2735a9ae50ffc679c3f9ec94bd3
--- /dev/null
+++ b/pfam_gap_rates/Z1.gap.json
@@ -0,0 +1 @@
+{"family": "Z1", "n_seqs": 161, "length": 298, "gap_rates": [0.43478260869565216, 0.13664596273291926, 0.07453416149068323, 0.062111801242236024, 0.062111801242236024, 0.055900621118012424, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.8198757763975155, 0.21739130434782608, 0.8012422360248447, 0.8571428571428571, 0.9254658385093167, 0.8198757763975155, 0.7888198757763976, 0.09316770186335403, 0.062111801242236024, 0.055900621118012424, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Zincin_1.gap.json b/pfam_gap_rates/Zincin_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e3aff5fdb371380990c40b0d21f5af7a8d09027
--- /dev/null
+++ b/pfam_gap_rates/Zincin_1.gap.json
@@ -0,0 +1 @@
+{"family": "Zincin_1", "n_seqs": 646, "length": 104, "gap_rates": [0.5247678018575851, 0.29721362229102166, 0.1873065015479876, 0.16408668730650156, 0.15479876160990713, 0.15015479876160992, 0.15015479876160992, 0.15170278637770898, 0.15015479876160992, 0.15015479876160992, 0.14860681114551083, 0.14705882352941177, 0.2724458204334365, 0.43343653250773995, 0.4535603715170279, 0.4907120743034056, 0.5061919504643962, 0.5185758513931888, 0.5371517027863777, 0.5386996904024768, 0.5851393188854489, 0.5030959752321982, 0.17337461300309598, 0.1563467492260062, 0.1346749226006192, 0.13622291021671826, 0.1393188854489164, 0.17647058823529413, 0.17182662538699692, 0.15479876160990713, 0.21362229102167182, 0.18885448916408668, 0.15170278637770898, 0.08204334365325078, 0.07894736842105263, 0.07894736842105263, 0.07430340557275542, 0.07585139318885449, 0.07275541795665634, 0.07739938080495357, 0.07430340557275542, 0.07894736842105263, 0.07430340557275542, 0.934984520123839, 0.9164086687306502, 0.28328173374613, 0.8746130030959752, 0.06191950464396285, 0.03560371517027864, 0.015479876160990712, 0.006191950464396285, 0.006191950464396285, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0015479876160990713, 0.0015479876160990713, 0.0015479876160990713, 0.7507739938080495, 0.0015479876160990713, 0.0030959752321981426, 0.0046439628482972135, 0.9396284829721362, 0.9226006191950464, 0.0015479876160990713, 0.0046439628482972135, 0.0030959752321981426, 0.0015479876160990713, 0.8885448916408669, 0.0015479876160990713, 0.0015479876160990713, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0046439628482972135, 0.0046439628482972135, 0.006191950464396285, 0.01238390092879257, 0.02321981424148607, 0.03560371517027864, 0.03869969040247678, 0.05108359133126935, 0.06811145510835913, 0.07739938080495357, 0.11609907120743033, 0.22136222910216719, 0.34210526315789475, 0.5681114551083591, 0.7321981424148607], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/adh_short_C2.gap.json b/pfam_gap_rates/adh_short_C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8efcd28e6ac43ea2f572550a2e44db24d512c046
--- /dev/null
+++ b/pfam_gap_rates/adh_short_C2.gap.json
@@ -0,0 +1 @@
+{"family": "adh_short_C2", "n_seqs": 5000, "length": 268, "gap_rates": [0.4826, 0.4528, 0.3096, 0.936, 0.144, 0.132, 0.118, 0.1124, 0.1116, 0.1104, 0.108, 0.108, 0.1072, 0.107, 0.1056, 0.1052, 0.1048, 0.1048, 0.1052, 0.1034, 0.1034, 0.1024, 0.1022, 0.102, 0.102, 0.1018, 0.1016, 0.1012, 0.1012, 0.1008, 0.1012, 0.8864, 0.484, 0.325, 0.2944, 0.2582, 0.1426, 0.1284, 0.124, 0.119, 0.1166, 0.1188, 0.144, 0.1302, 0.1028, 0.9446, 0.911, 0.0996, 0.1036, 0.8758, 0.5768, 0.0886, 0.7132, 0.4448, 0.084, 0.0818, 0.0798, 0.0794, 0.0794, 0.0782, 0.0778, 0.077, 0.0772, 0.0748, 0.0744, 0.073, 0.0712, 0.0714, 0.0712, 0.0714, 0.074, 0.0962, 0.1178, 0.118, 0.1178, 0.1098, 0.9192, 0.09, 0.0772, 0.0692, 0.067, 0.0672, 0.0648, 0.064, 0.064, 0.064, 0.0648, 0.064, 0.0642, 0.0636, 0.0632, 0.0636, 0.9044, 0.8764, 0.821, 0.6484, 0.0722, 0.0664, 0.0672, 0.0644, 0.0618, 0.0608, 0.0596, 0.058, 0.0562, 0.0556, 0.0554, 0.0552, 0.0542, 0.0538, 0.0526, 0.053, 0.0534, 0.0528, 0.0536, 0.0522, 0.0518, 0.0518, 0.0516, 0.0512, 0.0508, 0.0506, 0.0498, 0.0494, 0.0488, 0.049, 0.049, 0.9488, 0.6524, 0.0478, 0.0504, 0.0474, 0.0502, 0.0438, 0.5156, 0.8956, 0.9268, 0.9426, 0.9106, 0.8344, 0.2904, 0.0412, 0.041, 0.041, 0.0406, 0.0406, 0.0402, 0.04, 0.0398, 0.0398, 0.0574, 0.0412, 0.0578, 0.043, 0.0408, 0.9284, 0.0386, 0.0346, 0.0338, 0.0372, 0.0294, 0.9424, 0.8614, 0.0266, 0.0264, 0.026, 0.026, 0.0258, 0.0252, 0.0244, 0.024, 0.024, 0.024, 0.024, 0.0222, 0.0218, 0.021, 0.0208, 0.0204, 0.0204, 0.0202, 0.0196, 0.0188, 0.0194, 0.0188, 0.099, 0.0328, 0.0184, 0.0184, 0.0192, 0.0192, 0.0192, 0.0194, 0.0194, 0.0194, 0.0196, 0.0206, 0.0222, 0.0198, 0.032, 0.0328, 0.0342, 0.8792, 0.0432, 0.0474, 0.0532, 0.0484, 0.0658, 0.3524, 0.7922, 0.8514, 0.897, 0.9212, 0.932, 0.9142, 0.8764, 0.8266, 0.7434, 0.2776, 0.087, 0.068, 0.0678, 0.0494, 0.0382, 0.0346, 0.0356, 0.0366, 0.0328, 0.0316, 0.03, 0.0298, 0.0298, 0.0302, 0.03, 0.038, 0.029, 0.0286, 0.0284, 0.0286, 0.029, 0.0288, 0.0292, 0.0294, 0.0296, 0.0302, 0.0306, 0.0306, 0.031, 0.032, 0.0336, 0.06, 0.0682, 0.0754, 0.0584, 0.0366, 0.0368, 0.0374, 0.0384, 0.0394, 0.0412, 0.0424, 0.046, 0.0498, 0.0598, 0.0674, 0.1034, 0.3074, 0.653], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/cNMP_binding.gap.json b/pfam_gap_rates/cNMP_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b0515cddb61d023d1f10ab63900afc362784901
--- /dev/null
+++ b/pfam_gap_rates/cNMP_binding.gap.json
@@ -0,0 +1 @@
+{"family": "cNMP_binding", "n_seqs": 5000, "length": 96, "gap_rates": [0.502, 0.2358, 0.1288, 0.0832, 0.0546, 0.0416, 0.0368, 0.032, 0.0278, 0.026, 0.024, 0.0228, 0.0214, 0.0198, 0.0182, 0.0204, 0.022, 0.0148, 0.0132, 0.0128, 0.0126, 0.0122, 0.0124, 0.0122, 0.0112, 0.0112, 0.0112, 0.0114, 0.0112, 0.1984, 0.878, 0.9348, 0.4124, 0.1068, 0.0824, 0.0416, 0.025, 0.0182, 0.151, 0.1486, 0.9478, 0.1908, 0.0498, 0.0298, 0.0236, 0.0118, 0.005, 0.0008, 0.0006, 0.0006, 0.002, 0.0012, 0.001, 0.0028, 0.0042, 0.0196, 0.0104, 0.0088, 0.01, 0.9048, 0.9364, 0.8056, 0.0108, 0.093, 0.0228, 0.0142, 0.9488, 0.0106, 0.0112, 0.0112, 0.0104, 0.0108, 0.0114, 0.0118, 0.0122, 0.0148, 0.0142, 0.949, 0.0152, 0.0162, 0.0174, 0.0196, 0.0202, 0.0216, 0.0238, 0.0294, 0.0368, 0.0488, 0.0588, 0.0768, 0.1162, 0.155, 0.2154, 0.358, 0.5598, 0.8084], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/dCMP_cyt_deam_2.gap.json b/pfam_gap_rates/dCMP_cyt_deam_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f29a3b424c3b27098f44d027c5920c330da95f4
--- /dev/null
+++ b/pfam_gap_rates/dCMP_cyt_deam_2.gap.json
@@ -0,0 +1 @@
+{"family": "dCMP_cyt_deam_2", "n_seqs": 167, "length": 155, "gap_rates": [0.47305389221556887, 0.4491017964071856, 0.38323353293413176, 0.3712574850299401, 0.3712574850299401, 0.3712574850299401, 0.3712574850299401, 0.3652694610778443, 0.3652694610778443, 0.3652694610778443, 0.3772455089820359, 0.3772455089820359, 0.3652694610778443, 0.3652694610778443, 0.3652694610778443, 0.3652694610778443, 0.3772455089820359, 0.592814371257485, 0.7065868263473054, 0.6766467065868264, 0.6407185628742516, 0.3712574850299401, 0.3712574850299401, 0.3712574850299401, 0.3652694610778443, 0.3652694610778443, 0.3592814371257485, 0.3592814371257485, 0.3712574850299401, 0.3473053892215569, 0.3473053892215569, 0.3473053892215569, 0.3592814371257485, 0.3532934131736527, 0.3592814371257485, 0.6407185628742516, 0.6347305389221557, 0.6227544910179641, 0.592814371257485, 0.5568862275449101, 0.46107784431137727, 0.6766467065868264, 0.718562874251497, 0.8023952095808383, 0.8802395209580839, 0.9281437125748503, 0.9461077844311377, 0.9401197604790419, 0.9281437125748503, 0.8203592814371258, 0.7844311377245509, 0.6766467065868264, 0.6467065868263473, 0.24550898203592814, 0.17964071856287425, 0.08982035928143713, 0.9281437125748503, 0.9281437125748503, 0.9401197604790419, 0.9401197604790419, 0.9461077844311377, 0.9461077844311377, 0.9401197604790419, 0.9341317365269461, 0.9281437125748503, 0.9281437125748503, 0.059880239520958084, 0.041916167664670656, 0.041916167664670656, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.029940119760479042, 0.023952095808383235, 0.023952095808383235, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.041916167664670656, 0.017964071856287425, 0.017964071856287425, 0.041916167664670656, 0.017964071856287425, 0.017964071856287425, 0.03592814371257485, 0.03592814371257485, 0.041916167664670656, 0.059880239520958084, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.0718562874251497, 0.0718562874251497, 0.08982035928143713, 0.09580838323353294, 0.08982035928143713, 0.08982035928143713, 0.09580838323353294, 0.11976047904191617, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.11976047904191617, 0.1317365269461078, 0.1377245508982036, 0.1377245508982036, 0.8682634730538922, 0.6287425149700598, 0.18562874251497005, 0.18562874251497005, 0.19161676646706588, 0.19760479041916168, 0.2155688622754491, 0.23353293413173654, 0.2275449101796407, 0.2215568862275449, 0.2634730538922156, 0.2994011976047904, 0.2994011976047904, 0.31736526946107785, 0.3413173652694611, 0.3532934131736527, 0.3712574850299401, 0.3712574850299401, 0.38323353293413176, 0.4311377245508982, 0.41916167664670656, 0.4431137724550898, 0.4491017964071856, 0.4550898203592814, 0.4550898203592814, 0.46107784431137727, 0.47305389221556887, 0.48502994011976047, 0.5149700598802395, 0.6946107784431138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/eIF-5a.gap.json b/pfam_gap_rates/eIF-5a.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8978dc4bd67a93596e3663cc5aedeb8e8da67efd
--- /dev/null
+++ b/pfam_gap_rates/eIF-5a.gap.json
@@ -0,0 +1 @@
+{"family": "eIF-5a", "n_seqs": 567, "length": 78, "gap_rates": [0.20105820105820105, 0.14109347442680775, 0.13227513227513227, 0.12874779541446207, 0.042328042328042326, 0.037037037037037035, 0.03350970017636684, 0.031746031746031744, 0.02821869488536155, 0.015873015873015872, 0.015873015873015872, 0.01763668430335097, 0.20458553791887124, 0.15167548500881833, 0.014109347442680775, 0.10934744268077601, 0.014109347442680775, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.010582010582010581, 0.014109347442680775, 0.8430335097001763, 0.014109347442680775, 0.015873015873015872, 0.015873015873015872, 0.014109347442680775, 0.014109347442680775, 0.02292768959435626, 0.02292768959435626, 0.1111111111111111, 0.029982363315696647, 0.026455026455026454, 0.021164021164021163, 0.021164021164021163, 0.9029982363315696, 0.9400352733686067, 0.6825396825396826, 0.10582010582010581, 0.09523809523809523, 0.9065255731922398, 0.9329805996472663, 0.8112874779541446, 0.07054673721340388, 0.04938271604938271, 0.047619047619047616, 0.02292768959435626, 0.021164021164021163, 0.026455026455026454, 0.026455026455026454, 0.026455026455026454, 0.02821869488536155, 0.02821869488536155, 0.8236331569664903, 0.02821869488536155, 0.02821869488536155, 0.031746031746031744, 0.9047619047619048, 0.031746031746031744, 0.029982363315696647, 0.12522045855379188, 0.13051146384479717, 0.04938271604938271, 0.05291005291005291, 0.06701940035273368, 0.06701940035273368, 0.06701940035273368, 0.07407407407407407, 0.07760141093474426, 0.08289241622574955, 0.08289241622574955, 0.09171075837742504, 0.09700176366843033, 0.10582010582010581, 0.1164021164021164, 0.12522045855379188, 0.14109347442680775, 0.15343915343915343], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/eIF3_subunit.gap.json b/pfam_gap_rates/eIF3_subunit.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76715cd202da39d0b279b614c1560f6c1932c2b8
--- /dev/null
+++ b/pfam_gap_rates/eIF3_subunit.gap.json
@@ -0,0 +1 @@
+{"family": "eIF3_subunit", "n_seqs": 346, "length": 334, "gap_rates": [0.6416184971098265, 0.48554913294797686, 0.8872832369942196, 0.42485549132947975, 0.36416184971098264, 0.33236994219653176, 0.32947976878612717, 0.32947976878612717, 0.3208092485549133, 0.33236994219653176, 0.8930635838150289, 0.9248554913294798, 0.8728323699421965, 0.3786127167630058, 0.37283236994219654, 0.35260115606936415, 0.34104046242774566, 0.34971098265895956, 0.3930635838150289, 0.45664739884393063, 0.407514450867052, 0.3815028901734104, 0.3786127167630058, 0.34971098265895956, 0.3554913294797688, 0.2745664739884393, 0.6734104046242775, 0.7658959537572254, 0.9161849710982659, 0.8583815028901735, 0.7254335260115607, 0.5751445086705202, 0.24566473988439305, 0.2398843930635838, 0.22832369942196531, 0.22832369942196531, 0.23410404624277456, 0.23121387283236994, 0.9479768786127167, 0.7803468208092486, 0.2832369942196532, 0.2774566473988439, 0.2514450867052023, 0.8757225433526011, 0.28034682080924855, 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\ No newline at end of file
diff --git a/pfam_gap_rates/eIF3g.gap.json b/pfam_gap_rates/eIF3g.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d12b375fab1791126bcf34e5d3ab1790b9ebc57e
--- /dev/null
+++ b/pfam_gap_rates/eIF3g.gap.json
@@ -0,0 +1 @@
+{"family": "eIF3g", "n_seqs": 345, "length": 138, "gap_rates": [0.663768115942029, 0.5043478260869565, 0.42028985507246375, 0.26956521739130435, 0.25507246376811593, 0.24057971014492754, 0.1826086956521739, 0.1072463768115942, 0.1072463768115942, 0.10144927536231885, 0.0927536231884058, 0.0927536231884058, 0.0927536231884058, 0.0927536231884058, 0.0927536231884058, 0.0927536231884058, 0.0927536231884058, 0.12173913043478261, 0.15072463768115943, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09565217391304348, 0.08985507246376812, 0.08115942028985507, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.32753623188405795, 0.32753623188405795, 0.07536231884057971, 0.07536231884057971, 0.07246376811594203, 0.06956521739130435, 0.927536231884058, 0.06666666666666667, 0.06376811594202898, 0.06376811594202898, 0.06376811594202898, 0.06376811594202898, 0.06376811594202898, 0.06376811594202898, 0.06086956521739131, 0.06086956521739131, 0.06086956521739131, 0.057971014492753624, 0.057971014492753624, 0.057971014492753624, 0.06086956521739131, 0.06376811594202898, 0.06376811594202898, 0.06376811594202898, 0.06376811594202898, 0.06666666666666667, 0.06666666666666667, 0.06956521739130435, 0.0782608695652174, 0.07536231884057971, 0.07246376811594203, 0.08695652173913043, 0.0927536231884058, 0.3072463768115942, 0.2492753623188406, 0.08405797101449275, 0.0782608695652174, 0.06956521739130435, 0.06666666666666667, 0.06376811594202898, 0.7710144927536232, 0.06666666666666667, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06666666666666667, 0.7623188405797101, 0.8144927536231884, 0.936231884057971, 0.8724637681159421, 0.7681159420289855, 0.7594202898550725, 0.06666666666666667, 0.18840579710144928, 0.17681159420289855, 0.17971014492753623, 0.23768115942028986, 0.1826086956521739, 0.7246376811594203, 0.8202898550724638, 0.527536231884058, 0.1681159420289855, 0.1565217391304348, 0.13623188405797101, 0.1246376811594203, 0.10434782608695652, 0.11014492753623188, 0.1072463768115942, 0.11594202898550725, 0.12173913043478261, 0.13043478260869565, 0.12753623188405797, 0.12753623188405797, 0.14492753623188406, 0.4579710144927536, 0.4405797101449275, 0.7130434782608696, 0.3101449275362319, 0.1855072463768116, 0.14492753623188406, 0.1681159420289855, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.8434782608695652, 0.1391304347826087, 0.7478260869565218, 0.1391304347826087, 0.14202898550724638, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.1536231884057971, 0.19420289855072465, 0.6173913043478261], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/eIF_4EBP.gap.json b/pfam_gap_rates/eIF_4EBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d741b4d46ba7c71d3e40a9982e9f17382ff9dbe
--- /dev/null
+++ b/pfam_gap_rates/eIF_4EBP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/eRF1_2.gap.json b/pfam_gap_rates/eRF1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f07bdf1bfe15cb7dbb6a9521429bcde8b702150
--- /dev/null
+++ b/pfam_gap_rates/eRF1_2.gap.json
@@ -0,0 +1 @@
+{"family": "eRF1_2", "n_seqs": 873, "length": 146, "gap_rates": [0.5040091638029782, 0.13287514318442153, 0.09049255441008018, 0.056128293241695305, 0.052691867124856816, 0.050400916380297825, 0.03665521191294387, 0.03436426116838488, 0.033218785796105384, 0.032073310423825885, 0.032073310423825885, 0.032073310423825885, 0.032073310423825885, 0.032073310423825885, 0.032073310423825885, 0.032073310423825885, 0.029782359679266894, 0.0286368843069874, 0.027491408934707903, 0.027491408934707903, 0.027491408934707903, 0.025200458190148912, 0.025200458190148912, 0.025200458190148912, 0.025200458190148912, 0.025200458190148912, 0.022909507445589918, 0.022909507445589918, 0.022909507445589918, 0.022909507445589918, 0.030927835051546393, 0.033218785796105384, 0.033218785796105384, 0.030927835051546393, 0.03436426116838488, 0.033218785796105384, 0.043528064146620846, 0.2290950744558992, 0.18327605956471935, 0.13974799541809851, 0.09621993127147767, 0.045819014891179836, 0.049255441008018326, 0.052691867124856816, 0.33906071019473083, 0.3436426116838488, 0.3917525773195876, 0.4020618556701031, 0.3940435280641466, 0.3447880870561283, 0.12943871706758306, 0.10194730813287514, 0.0859106529209622, 0.07445589919816724, 0.022909507445589918, 0.021764032073310423, 0.021764032073310423, 0.020618556701030927, 0.019473081328751432, 0.018327605956471937, 0.018327605956471937, 0.019473081328751432, 0.019473081328751432, 0.019473081328751432, 0.018327605956471937, 0.019473081328751432, 0.020618556701030927, 0.022909507445589918, 0.3447880870561283, 0.3161512027491409, 0.8934707903780069, 0.7892325315005727, 0.3711340206185567, 0.08705612829324169, 0.054982817869415807, 0.037800687285223365, 0.025200458190148912, 0.018327605956471937, 0.016036655211912942, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.01718213058419244, 0.018327605956471937, 0.018327605956471937, 0.018327605956471937, 0.021764032073310423, 0.021764032073310423, 0.022909507445589918, 0.022909507445589918, 0.022909507445589918, 0.024054982817869417, 0.024054982817869417, 0.030927835051546393, 0.035509736540664374, 0.035509736540664374, 0.041237113402061855, 0.037800687285223365, 0.033218785796105384, 0.033218785796105384, 0.032073310423825885, 0.032073310423825885, 0.03436426116838488, 0.042382588774341354, 0.041237113402061855, 0.6345933562428407, 0.6357388316151202, 0.6368843069873997, 0.6575028636884307, 0.9347079037800687, 0.6426116838487973, 0.6368843069873997, 0.6357388316151202, 0.6323024054982818, 0.04009163802978236, 0.042382588774341354, 0.041237113402061855, 0.043528064146620846, 0.043528064146620846, 0.044673539518900345, 0.046964490263459335, 0.044673539518900345, 0.044673539518900345, 0.045819014891179836, 0.048109965635738834, 0.049255441008018326, 0.049255441008018326, 0.049255441008018326, 0.049255441008018326, 0.050400916380297825, 0.050400916380297825, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.054982817869415807, 0.6609392898052692, 0.6426116838487973, 0.0882016036655212, 0.143184421534937, 0.16036655211912945, 0.18900343642611683, 0.21305841924398625, 0.3356242840778923, 0.6620847651775487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/efThoc1.gap.json b/pfam_gap_rates/efThoc1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7587e241c43b6c4c354c7c7476382ad4ed0b3ee0
--- /dev/null
+++ b/pfam_gap_rates/efThoc1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/hDGE_amylase.gap.json b/pfam_gap_rates/hDGE_amylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02028ea040aeda0c397b4a537b87fcf606ef5791
--- /dev/null
+++ b/pfam_gap_rates/hDGE_amylase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/polyprenyl_synt.gap.json b/pfam_gap_rates/polyprenyl_synt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbc9d303f9b6a82623002d66c7e167014a13aacc
--- /dev/null
+++ b/pfam_gap_rates/polyprenyl_synt.gap.json
@@ -0,0 +1 @@
+{"family": "polyprenyl_synt", "n_seqs": 5000, "length": 286, "gap_rates": [0.7992, 0.4888, 0.288, 0.2456, 0.2066, 0.177, 0.1612, 0.1466, 0.1388, 0.1296, 0.1244, 0.2484, 0.0998, 0.0918, 0.09, 0.0882, 0.0822, 0.0794, 0.0766, 0.072, 0.07, 0.0688, 0.0676, 0.0666, 0.0658, 0.065, 0.0648, 0.065, 0.065, 0.0646, 0.0654, 0.2764, 0.846, 0.9102, 0.8692, 0.829, 0.119, 0.2464, 0.9446, 0.9452, 0.9464, 0.9496, 0.9472, 0.9456, 0.9448, 0.9446, 0.6586, 0.5896, 0.4828, 0.0638, 0.0602, 0.0574, 0.0556, 0.054, 0.0532, 0.0532, 0.0524, 0.052, 0.052, 0.052, 0.0498, 0.0482, 0.0486, 0.0476, 0.0478, 0.0476, 0.0476, 0.047, 0.0462, 0.0462, 0.0464, 0.0462, 0.725, 0.7242, 0.0444, 0.0442, 0.044, 0.045, 0.0472, 0.0504, 0.054, 0.0542, 0.0506, 0.0472, 0.0446, 0.044, 0.0444, 0.044, 0.0436, 0.0434, 0.8984, 0.893, 0.0432, 0.0442, 0.0444, 0.0446, 0.1086, 0.0456, 0.0444, 0.0436, 0.0434, 0.0436, 0.0444, 0.0444, 0.0448, 0.0448, 0.0448, 0.0442, 0.0448, 0.0452, 0.045, 0.045, 0.0446, 0.0454, 0.0456, 0.0466, 0.4962, 0.4826, 0.6028, 0.8868, 0.7896, 0.5436, 0.4614, 0.9458, 0.9034, 0.1154, 0.0672, 0.0512, 0.0486, 0.0474, 0.047, 0.0476, 0.0462, 0.0468, 0.0464, 0.0458, 0.0464, 0.0478, 0.0464, 0.7664, 0.759, 0.0466, 0.0462, 0.0458, 0.046, 0.0456, 0.0452, 0.0454, 0.046, 0.0462, 0.0468, 0.904, 0.9426, 0.8924, 0.0688, 0.0952, 0.0892, 0.4098, 0.2478, 0.093, 0.0718, 0.081, 0.1134, 0.7504, 0.6728, 0.6012, 0.0624, 0.0574, 0.0574, 0.055, 0.0558, 0.0504, 0.0494, 0.048, 0.0458, 0.0454, 0.0454, 0.0456, 0.0446, 0.8458, 0.0448, 0.0442, 0.0448, 0.0444, 0.0444, 0.0454, 0.0452, 0.0444, 0.0434, 0.0436, 0.0436, 0.0442, 0.0442, 0.044, 0.0432, 0.0514, 0.1186, 0.0936, 0.916, 0.0898, 0.1092, 0.0972, 0.0508, 0.0436, 0.0436, 0.043, 0.043, 0.0424, 0.0424, 0.0426, 0.0428, 0.0422, 0.0424, 0.043, 0.0442, 0.0454, 0.047, 0.0468, 0.0474, 0.0488, 0.0494, 0.0504, 0.0512, 0.0526, 0.0548, 0.0576, 0.0958, 0.0864, 0.101, 0.0894, 0.0824, 0.091, 0.0846, 0.0818, 0.0832, 0.184, 0.0952, 0.089, 0.0858, 0.0866, 0.0888, 0.0876, 0.0858, 0.0854, 0.0864, 0.0878, 0.0886, 0.09, 0.0918, 0.0942, 0.0968, 0.0988, 0.1002, 0.1024, 0.3712, 0.1672, 0.1598, 0.2236, 0.2292, 0.3838, 0.3626, 0.404, 0.312, 0.2498, 0.2662, 0.2852, 0.3078, 0.3288, 0.35, 0.8462, 0.4038, 0.4276, 0.4484, 0.5024, 0.5022, 0.5068, 0.5178, 0.5314, 0.5432, 0.5618, 0.5776, 0.595, 0.6326, 0.687, 0.7842, 0.9464], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ribosomal_L24.gap.json b/pfam_gap_rates/ribosomal_L24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da26b2ad770124d99cdcaf12c8d655bad89924fd
--- /dev/null
+++ b/pfam_gap_rates/ribosomal_L24.gap.json
@@ -0,0 +1 @@
+{"family": "ribosomal_L24", "n_seqs": 2455, "length": 73, "gap_rates": [0.14826883910386965, 0.05539714867617108, 0.04073319755600815, 0.032586558044806514, 0.028920570264765785, 0.026069246435845215, 0.026069246435845215, 0.02525458248472505, 0.024032586558044806, 0.021995926680244398, 0.07617107942973524, 0.07739307535641547, 0.9360488798370672, 0.0989816700610998, 0.033808553971486764, 0.019551934826883912, 0.015071283095723014, 0.7397148676171079, 0.011405295315682282, 0.008961303462321792, 0.006109979633401222, 0.0036659877800407333, 0.002036659877800407, 0.0012219959266802445, 0.0004073319755600815, 0.0004073319755600815, 0.0004073319755600815, 0.0004073319755600815, 0.0004073319755600815, 0.0004073319755600815, 0.0004073319755600815, 0.000814663951120163, 0.0012219959266802445, 0.001629327902240326, 0.012219959266802444, 0.014256619144602852, 0.025661914460285134, 0.09490835030549898, 0.10957230142566192, 0.08920570264765784, 0.04114052953156823, 0.034623217922606926, 0.034623217922606926, 0.03543788187372709, 0.03625254582484725, 0.03747454175152749, 0.038696537678207736, 0.039103869653767824, 0.10957230142566192, 0.10835030549898167, 0.21262729124236251, 0.9209775967413442, 0.9470468431771895, 0.8659877800407332, 0.2040733197556008, 0.04725050916496945, 0.04643584521384929, 0.9356415478615071, 0.048879837067209775, 0.9360488798370672, 0.925050916496945, 0.05539714867617108, 0.05254582484725051, 0.05295315682281059, 0.054175152749490835, 0.054582484725050916, 0.05621181262729124, 0.07169042769857434, 0.07820773930753565, 0.08431771894093687, 0.10183299389002037, 0.16578411405295315, 0.47780040733197554], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_1b.gap.json b/pfam_gap_rates/tRNA-synt_1b.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca4477faec82c287a8b719d12b6ab1631445a906
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_1b.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA-synt_1b", "n_seqs": 5000, "length": 335, "gap_rates": [0.726, 0.5292, 0.423, 0.327, 0.1486, 0.1078, 0.0962, 0.0952, 0.095, 0.0888, 0.0882, 0.0878, 0.0876, 0.087, 0.0868, 0.545, 0.0846, 0.0844, 0.0848, 0.0842, 0.5836, 0.0842, 0.083, 0.0824, 0.082, 0.0816, 0.081, 0.0808, 0.0808, 0.0808, 0.0808, 0.0804, 0.0802, 0.332, 0.9442, 0.847, 0.0866, 0.0804, 0.0802, 0.0794, 0.0802, 0.0794, 0.0788, 0.0778, 0.0774, 0.0864, 0.09, 0.09, 0.09, 0.0818, 0.0778, 0.0774, 0.0772, 0.0774, 0.0776, 0.0784, 0.6498, 0.5676, 0.501, 0.374, 0.0892, 0.0832, 0.0776, 0.077, 0.076, 0.0752, 0.0764, 0.076, 0.0762, 0.076, 0.0768, 0.078, 0.0802, 0.0826, 0.6202, 0.607, 0.546, 0.5322, 0.528, 0.0756, 0.074, 0.072, 0.0716, 0.0716, 0.0724, 0.0724, 0.0744, 0.0932, 0.0838, 0.7668, 0.8724, 0.9306, 0.8124, 0.7618, 0.0758, 0.0706, 0.0702, 0.0702, 0.0704, 0.0704, 0.0708, 0.071, 0.0714, 0.0736, 0.0746, 0.0754, 0.0786, 0.0822, 0.0846, 0.0834, 0.0822, 0.082, 0.0864, 0.0834, 0.088, 0.0814, 0.0808, 0.08, 0.2282, 0.0916, 0.0902, 0.083, 0.0814, 0.0794, 0.0776, 0.0778, 0.0772, 0.0778, 0.0772, 0.0774, 0.915, 0.3584, 0.296, 0.135, 0.1052, 0.1004, 0.1006, 0.11, 0.8604, 0.3708, 0.9164, 0.9408, 0.9346, 0.9022, 0.247, 0.1492, 0.135, 0.0816, 0.0804, 0.08, 0.0802, 0.0776, 0.0766, 0.078, 0.0754, 0.0758, 0.0756, 0.0748, 0.0754, 0.077, 0.076, 0.0754, 0.0754, 0.082, 0.0808, 0.0788, 0.076, 0.0732, 0.7002, 0.7102, 0.7062, 0.6984, 0.0728, 0.0728, 0.0724, 0.0722, 0.0714, 0.0628, 0.0624, 0.0618, 0.062, 0.0616, 0.0618, 0.0618, 0.0612, 0.0606, 0.0596, 0.0594, 0.06, 0.0602, 0.0598, 0.0596, 0.0586, 0.0602, 0.064, 0.0664, 0.0678, 0.5812, 0.91, 0.942, 0.9216, 0.817, 0.5782, 0.5612, 0.5548, 0.5196, 0.4794, 0.0698, 0.069, 0.0686, 0.0686, 0.0688, 0.0688, 0.07, 0.0676, 0.5972, 0.778, 0.684, 0.589, 0.0672, 0.0668, 0.068, 0.068, 0.0672, 0.0672, 0.068, 0.069, 0.509, 0.9338, 0.0672, 0.0656, 0.066, 0.0662, 0.0664, 0.0662, 0.066, 0.0664, 0.8094, 0.7916, 0.6264, 0.1536, 0.1534, 0.1546, 0.0694, 0.0718, 0.074, 0.0798, 0.0872, 0.0912, 0.0936, 0.0872, 0.0842, 0.076, 0.0728, 0.0712, 0.0726, 0.0722, 0.072, 0.072, 0.0732, 0.0736, 0.0738, 0.0738, 0.0744, 0.8264, 0.781, 0.217, 0.1028, 0.1014, 0.0876, 0.0884, 0.0882, 0.088, 0.0898, 0.0898, 0.0926, 0.0928, 0.0924, 0.0894, 0.0882, 0.9182, 0.9266, 0.9484, 0.9214, 0.9152, 0.5366, 0.126, 0.1138, 0.1054, 0.1022, 0.0956, 0.095, 0.091, 0.0986, 0.097, 0.0942, 0.0982, 0.1028, 0.1182, 0.9178, 0.6922, 0.6106, 0.4956, 0.392, 0.303, 0.103, 0.101, 0.102, 0.1058, 0.105, 0.1068, 0.1086, 0.1108, 0.1144, 0.1162, 0.3222, 0.3046, 0.1228, 0.1216, 0.121, 0.1214, 0.1224, 0.1236, 0.1266, 0.1324, 0.1356, 0.1442, 0.151, 0.1616, 0.1776, 0.2144, 0.255, 0.327, 0.4064, 0.8998], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_bind_2.gap.json b/pfam_gap_rates/tRNA_bind_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb49e87703cf8b7ff5420dbf4c6eba793412f42a
--- /dev/null
+++ b/pfam_gap_rates/tRNA_bind_2.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_bind_2", "n_seqs": 364, "length": 250, "gap_rates": [0.21153846153846154, 0.2087912087912088, 0.18681318681318682, 0.17032967032967034, 0.16758241758241757, 0.1510989010989011, 0.13186813186813187, 0.12912087912087913, 0.12362637362637363, 0.12362637362637363, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.11813186813186813, 0.11813186813186813, 0.11813186813186813, 0.11813186813186813, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.11813186813186813, 0.11813186813186813, 0.11813186813186813, 0.11813186813186813, 0.11813186813186813, 0.12087912087912088, 0.12087912087912088, 0.12087912087912088, 0.14285714285714285, 0.18956043956043955, 0.25274725274725274, 0.9340659340659341, 0.945054945054945, 0.9368131868131868, 0.9258241758241759, 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\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C2HC5.gap.json b/pfam_gap_rates/zf-C2HC5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e2cce663f6b5bf1ed083b7e11c945d13edee6a2
--- /dev/null
+++ b/pfam_gap_rates/zf-C2HC5.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C2HC5", "n_seqs": 286, "length": 54, "gap_rates": [0.8286713286713286, 0.26223776223776224, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.5664335664335665, 0.5594405594405595, 0.5594405594405595, 0.02097902097902098, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.0034965034965034965, 0.0034965034965034965, 0.0034965034965034965, 0.0034965034965034965, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0034965034965034965, 0.0034965034965034965, 0.01048951048951049, 0.8426573426573427, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.04895104895104895, 0.07692307692307693, 0.0944055944055944, 0.11538461538461539, 0.13636363636363635, 0.22727272727272727, 0.26223776223776224, 0.28321678321678323, 0.32167832167832167, 0.3706293706293706, 0.5454545454545454, 0.5699300699300699, 0.7167832167832168], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C2HE.gap.json b/pfam_gap_rates/zf-C2HE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1d254d306b29f4f072eb801f8fd82a60d264038
--- /dev/null
+++ b/pfam_gap_rates/zf-C2HE.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C2HE", "n_seqs": 196, "length": 75, "gap_rates": [0.3163265306122449, 0.0663265306122449, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.3622448979591837, 0.3520408163265306, 0.01020408163265306, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.01020408163265306, 0.00510204081632653, 0.8469387755102041, 0.8775510204081632, 0.9336734693877551, 0.9387755102040817, 0.9489795918367347, 0.9489795918367347, 0.9438775510204082, 0.9336734693877551, 0.9132653061224489, 0.8469387755102041, 0.8367346938775511, 0.05612244897959184, 0.6173469387755102, 0.47959183673469385, 0.4030612244897959, 0.25, 0.17857142857142858, 0.15306122448979592, 0.09693877551020408, 0.061224489795918366, 0.04591836734693878, 0.0, 0.5714285714285714, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5969387755102041, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00510204081632653, 0.015306122448979591, 0.05612244897959184, 0.17857142857142858, 0.30612244897959184, 0.4387755102040816, 0.7091836734693877], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C3HC4_2.gap.json b/pfam_gap_rates/zf-C3HC4_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..759039729985db607094f8e6546e7d07d423b8b5
--- /dev/null
+++ b/pfam_gap_rates/zf-C3HC4_2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C3HC4_2", "n_seqs": 2573, "length": 42, "gap_rates": [0.5176836377769141, 0.02681694520015546, 0.026039642440730666, 0.025262339681305868, 0.024485036921881073, 0.023707734162456275, 0.022153128643606686, 0.019821220365332296, 0.016323357947920714, 0.010882238631947143, 0.012825495530509134, 0.036921881072677805, 0.46871356393315194, 0.003497862417411582, 0.003109211037699184, 0.002331908278274388, 0.000777302759424796, 0.000388651379712398, 0.000388651379712398, 0.0, 0.0, 0.000388651379712398, 0.000388651379712398, 0.000388651379712398, 0.000388651379712398, 0.000388651379712398, 0.000777302759424796, 0.001165954139137194, 0.001165954139137194, 0.008550330353672756, 0.04003109211037699, 0.029926156237854645, 0.03731053245239021, 0.046638165565487756, 0.04508356004663817, 0.9164399533618345, 0.687524290711232, 0.047804119704624955, 0.04819277108433735, 0.04858142246404975, 0.07228915662650602, 0.1713952584531675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CCCH_2.gap.json b/pfam_gap_rates/zf-CCCH_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21841cd860e56624f1590a30e790bafe54626ab8
--- /dev/null
+++ b/pfam_gap_rates/zf-CCCH_2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CCCH_2", "n_seqs": 1360, "length": 23, "gap_rates": [0.6110294117647059, 0.09779411764705882, 0.06911764705882353, 0.06323529411764706, 0.060294117647058824, 0.05514705882352941, 0.033823529411764704, 0.7485294117647059, 0.9360294117647059, 0.7448529411764706, 0.0007352941176470588, 0.6404411764705882, 0.0007352941176470588, 0.0022058823529411764, 0.003676470588235294, 0.9485294117647058, 0.008088235294117648, 0.008088235294117648, 0.008088235294117648, 0.015441176470588236, 0.016911764705882352, 0.016911764705882352, 0.36911764705882355], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-MYND.gap.json b/pfam_gap_rates/zf-MYND.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95e043ba0b0a7b3b292846b33ba6e5abad0e4728
--- /dev/null
+++ b/pfam_gap_rates/zf-MYND.gap.json
@@ -0,0 +1 @@
+{"family": "zf-MYND", "n_seqs": 4259, "length": 49, "gap_rates": [0.27706034280347497, 0.26344212256398214, 0.19746419347264615, 0.12890349847382016, 0.12725992016905377, 0.11317210612819911, 0.5928621742193003, 0.7330359239258042, 0.9288565390936839, 0.9467011035454332, 0.8861235031697582, 0.6602488847147218, 0.506456914768725, 0.36229161775064567, 0.12702512326837287, 0.1364169992956093, 0.12491195116224466, 0.02747123737966659, 0.7973702747123738, 0.9288565390936839, 0.7403146278469124, 0.012209438835407373, 0.008922282225874618, 0.021366517961962903, 0.020896924160601082, 0.005635125616341864, 0.020192533458558346, 0.0037567504108945763, 0.001643578304766377, 0.001408781404085466, 0.00023479690068091102, 0.0, 0.000704390702042733, 0.00023479690068091102, 0.00023479690068091102, 0.00023479690068091102, 0.000704390702042733, 0.0009391876027236441, 0.0039915473115754874, 0.0061047194177036865, 0.007278703921108241, 0.7119042028645222, 0.009626672927917352, 0.01150504813336464, 0.011974641934726462, 0.013148626438131016, 0.017374970650387414, 0.03005400328715661, 0.03521953510213665], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RING_5.gap.json b/pfam_gap_rates/zf-RING_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d3838c813e6650b6cd317a9ce0766d3380a18e9
--- /dev/null
+++ b/pfam_gap_rates/zf-RING_5.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RING_5", "n_seqs": 482, "length": 65, "gap_rates": [0.4087136929460581, 0.03112033195020747, 0.029045643153526972, 0.8900414937759336, 0.8900414937759336, 0.026970954356846474, 0.026970954356846474, 0.026970954356846474, 0.026970954356846474, 0.026970954356846474, 0.026970954356846474, 0.6970954356846473, 0.8879668049792531, 0.9336099585062241, 0.9439834024896265, 0.9128630705394191, 0.8195020746887967, 0.529045643153527, 0.31742738589211617, 0.25103734439834025, 0.06846473029045644, 0.03941908713692946, 0.006224066390041493, 0.9481327800829875, 0.002074688796680498, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004149377593360996, 0.558091286307054, 0.7157676348547718, 0.8174273858921162, 0.8941908713692946, 0.9253112033195021, 0.9439834024896265, 0.9066390041493776, 0.8713692946058091, 0.7655601659751037, 0.6535269709543569, 0.4336099585062241, 0.27385892116182575, 0.23029045643153526, 0.07883817427385892, 0.04149377593360996, 0.012448132780082987, 0.01037344398340249, 0.01037344398340249, 0.01037344398340249, 0.022821576763485476, 0.06016597510373444, 0.549792531120332], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RRN7.gap.json b/pfam_gap_rates/zf-RRN7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e794cd1025d53c1d527ef9dfb6cc527a609c611
--- /dev/null
+++ b/pfam_gap_rates/zf-RRN7.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RRN7", "n_seqs": 112, "length": 36, "gap_rates": [0.8303571428571429, 0.5267857142857143, 0.30357142857142855, 0.20535714285714285, 0.08928571428571429, 0.026785714285714284, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.75, 0.6785714285714286, 0.0, 0.9464285714285714, 0.0, 0.0, 0.0, 0.0, 0.6696428571428571, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008928571428571428, 0.05357142857142857, 0.19642857142857142, 0.35714285714285715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-TAZ.gap.json b/pfam_gap_rates/zf-TAZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a15ac518333cbe1a41d38a16c9a51f690889e2e
--- /dev/null
+++ b/pfam_gap_rates/zf-TAZ.gap.json
@@ -0,0 +1 @@
+{"family": "zf-TAZ", "n_seqs": 647, "length": 94, "gap_rates": [0.6476043276661515, 0.3261205564142195, 0.14992272024729522, 0.08346213292117466, 0.06027820710973725, 0.04482225656877898, 0.03400309119010819, 0.03400309119010819, 0.03400309119010819, 0.030911901081916538, 0.02936630602782071, 0.02936630602782071, 0.02936630602782071, 0.8639876352395672, 0.8624420401854714, 0.027820710973724884, 0.03400309119010819, 0.03709428129829984, 0.02936630602782071, 0.027820710973724884, 0.5795981452859351, 0.5734157650695518, 0.44049459041731065, 0.6630602782071098, 0.7047913446676971, 0.8207109737248841, 0.8686244204018547, 0.8547140649149922, 0.7836166924265843, 0.6862442040185471, 0.6259659969088099, 0.4034003091190108, 0.02627511591962906, 0.7897990726429676, 0.09428129829984544, 0.02627511591962906, 0.01854714064914992, 0.017001545595054096, 0.015455950540958269, 0.013910355486862442, 0.012364760432766615, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.0061823802163833074, 0.7635239567233385, 0.9010819165378671, 0.7434312210200927, 0.1777434312210201, 0.06646058732612056, 0.7635239567233385, 0.7171561051004637, 0.03400309119010819, 0.02009273570324575, 0.017001545595054096, 0.013910355486862442, 0.5656877897990726, 0.5502318392581144, 0.021638330757341576, 0.02009273570324575, 0.021638330757341576, 0.023183925811437404, 0.023183925811437404, 0.02472952086553323, 0.02472952086553323, 0.02472952086553323, 0.02627511591962906, 0.027820710973724884, 0.46986089644513135, 0.02936630602782071, 0.030911901081916538, 0.030911901081916538, 0.030911901081916538, 0.030911901081916538, 0.03400309119010819, 0.03400309119010819, 0.10819165378670788, 0.06646058732612056, 0.9319938176197836, 0.7032457496136012, 0.04173106646058733, 0.04327666151468315, 0.04945904173106646, 0.49768160741885625, 0.49768160741885625, 0.06646058732612056], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-U1.gap.json b/pfam_gap_rates/zf-U1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70b98fb7fe33b72bd5949c45f7d465d144ddc0ce
--- /dev/null
+++ b/pfam_gap_rates/zf-U1.gap.json
@@ -0,0 +1 @@
+{"family": "zf-U1", "n_seqs": 619, "length": 38, "gap_rates": [0.5525040387722132, 0.2940226171243942, 0.13893376413570274, 0.06623586429725363, 0.05815831987075929, 0.045234248788368334, 0.03715670436187399, 0.03715670436187399, 0.03715670436187399, 0.035541195476575124, 0.033925686591276254, 0.033925686591276254, 0.033925686591276254, 0.2730210016155089, 0.03877221324717286, 0.035541195476575124, 0.029079159935379646, 0.05331179321486268, 0.051696284329563816, 0.004846526655896607, 0.17609046849757673, 0.008077544426494346, 0.006462035541195477, 0.006462035541195477, 0.006462035541195477, 0.006462035541195477, 0.006462035541195477, 0.006462035541195477, 0.009693053311793215, 0.006462035541195477, 0.006462035541195477, 0.006462035541195477, 0.011308562197092083, 0.0210016155088853, 0.03231017770597738, 0.07269789983844911, 0.23909531502423265, 0.4394184168012924], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-trcl.gap.json b/pfam_gap_rates/zf-trcl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abb65d532fac4449c1975d12a3759f42b5599122
--- /dev/null
+++ b/pfam_gap_rates/zf-trcl.gap.json
@@ -0,0 +1 @@
+{"family": "zf-trcl", "n_seqs": 418, "length": 50, "gap_rates": [0.48325358851674644, 0.11722488038277512, 0.10287081339712918, 0.06220095693779904, 0.04066985645933014, 0.004784688995215311, 0.0023923444976076554, 0.0023923444976076554, 0.007177033492822967, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.937799043062201, 0.9401913875598086, 0.9354066985645934, 0.007177033492822967, 0.1339712918660287, 0.02631578947368421, 0.011961722488038277, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.011961722488038277, 0.014354066985645933, 0.014354066985645933, 0.019138755980861243, 0.023923444976076555, 0.023923444976076555, 0.05263157894736842, 0.1291866028708134, 0.18181818181818182, 0.4258373205741627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zinc_ribbon_2.gap.json b/pfam_gap_rates/zinc_ribbon_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f71b0e663be9f0a0d6f96e7f55731b2ea65b936
--- /dev/null
+++ b/pfam_gap_rates/zinc_ribbon_2.gap.json
@@ -0,0 +1 @@
+{"family": "zinc_ribbon_2", "n_seqs": 1277, "length": 23, "gap_rates": [0.2999216914643696, 0.0015661707126076742, 0.0007830853563038371, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01096319498825372, 0.07204385277995301, 0.21848081440877057, 0.5583398590446359], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zinc_ribbon_9.gap.json b/pfam_gap_rates/zinc_ribbon_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f980e130466f4667983027a3430a834fce5624f1
--- /dev/null
+++ b/pfam_gap_rates/zinc_ribbon_9.gap.json
@@ -0,0 +1 @@
+{"family": "zinc_ribbon_9", "n_seqs": 326, "length": 39, "gap_rates": [0.6349693251533742, 0.1165644171779141, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03067484662576687, 0.03067484662576687, 0.0, 0.0, 0.012269938650306749, 0.2331288343558282, 0.3312883435582822, 0.2116564417177914, 0.9325153374233128, 0.1411042944785276, 0.049079754601226995, 0.009202453987730062, 0.0, 0.9294478527607362, 0.9079754601226994, 0.009202453987730062, 0.9447852760736196, 0.49693251533742333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003067484662576687, 0.003067484662576687, 0.003067484662576687, 0.009202453987730062, 0.03680981595092025, 0.254601226993865], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file